Citrus Sinensis ID: 028686

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-----
Protein Sequence
MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACCGGT
Secondary Structure (PSIPRED)
cccEEEEEEccccccHHHHHHHcccccccccccEEccEEcEEEEEEEccEEEEEEEEEccccccHHHHHHHHcccccEEEEEEEcccHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccccccHHHHHHHHHHHcccEEEccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEccccccHHHHHHHHHHccccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHHHHHHcccccccEEEEEEEcccHHHHHcHHHHHHHHHHHcccccEEEEEEEccccHHHcccccHHHHHHHHHHHcccEEEccccccccHHHHHHHHHHHHHcHHcccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MLFLLRIYFerggvgksclllrfsdgsfttsfITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYdvtdessfNNIRNWIRNIEQHASDNVNKVLVgnkadmdeskravptskgqaLADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRladtdsrsepstikinqpdqaggvgqaaqksaccggt
Flexible Loop (DISEMBL)
MLFLLRIYFERGGVGKSCLLLRFSDGSfttsfittigidfkirtieldgkriklqiwdtagqerFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNkadmdeskravptskgqalADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLadtdsrsepstikinqpdqaggvgQAAQKSACCGGT
Low Complexity Region (SEG)
MLFLLRIYFERGGVGKSCLLLRfsdgsfttsfittigidfKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACCGGT
Disordered region (IsUnstruct)
*LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV********************LADEYGIKFFETSAKTNLNVEQVFFSIARDIK***************************************
Disordered Region (DISOPRED)
MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARD**********************************SACCG**
Disordered Region (DISEMBL)
MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD**************ALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR**********STIKINQP*******************
Disordered Region (DISPRO)
MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA***********************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACCGGT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	205	2.2.26 [Sep-21-2011]
P28186	216	Ras-related protein RABE1	yes	no	0.931	0.884	0.937	1e-103
O24466	216	Ras-related protein RABE1	yes	no	0.931	0.884	0.921	1e-101
Q39433	215	Ras-related protein RAB1B	N/A	no	0.921	0.879	0.901	5e-96
Q9LZD4	216	Ras-related protein RABE1	no	no	0.921	0.875	0.852	1e-86
Q9SF91	218	Ras-related protein RABE1	no	no	0.926	0.871	0.832	1e-84
P20791	203	Ras-related protein Rab-8	yes	no	0.921	0.931	0.676	3e-73
P20790	208	Ras-related protein Rab-8	no	no	0.897	0.884	0.715	3e-73
P36861	217	GTP-binding protein yptV2	N/A	no	0.926	0.875	0.608	4e-67
P17609	200	GTP-binding protein ypt2	yes	no	0.785	0.805	0.728	2e-65
Q4R5P1	207	Ras-related protein Rab-8	N/A	no	0.848	0.840	0.65	5e-63

>sp|P28186|RAE1C_ARATH Ras-related protein RABE1c OS=Arabidopsis thaliana GN=RABE1C PE=1 SV=1

 Score =  374 bits (960), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/191 (93%), Positives = 186/191 (97%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY
Sbjct: 25  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 84

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK+LVGNKADMDESKRAVPT+KG
Sbjct: 85  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKG 144

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGV 192
           QALADEYGIKFFETSAKTNLNVE+VFFSI RDIKQRL+DTDSR+EP+TIKI+Q DQA G 
Sbjct: 145 QALADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQRLSDTDSRAEPATIKISQTDQAAGA 204

Query: 193 GQAAQKSACCG 203
           GQA QKSACCG
Sbjct: 205 GQATQKSACCG 215

Involved in membrane trafficking from the Golgi to the plasma membrane.
Arabidopsis thaliana (taxid: 3702)

>sp|O24466|RAE1A_ARATH Ras-related protein RABE1a OS=Arabidopsis thaliana GN=RABE1A PE=1 SV=1

 Score =  369 bits (946), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/191 (92%), Positives = 183/191 (95%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY
Sbjct: 25  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 84

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD+VNK+LVGNKADMDESKRAVP SKG
Sbjct: 85  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDSVNKILVGNKADMDESKRAVPKSKG 144

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGV 192
           QALADEYG+KFFETSAKTNLNVE+VFFSIA+DIKQRLADTD+R+EP TIKINQ DQ  G 
Sbjct: 145 QALADEYGMKFFETSAKTNLNVEEVFFSIAKDIKQRLADTDARAEPQTIKINQSDQGAGT 204

Query: 193 GQAAQKSACCG 203
            QA QKSACCG
Sbjct: 205 SQATQKSACCG 215

Involved in membrane trafficking from the Golgi to the plasma membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39433|RB1BV_BETVU Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1

 Score =  350 bits (897), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 173/192 (90%), Positives = 180/192 (93%), Gaps = 3/192 (1%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY
Sbjct: 25  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 84

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK+LVGNKADMDESKRAVPT+KG
Sbjct: 85  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKG 144

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEP-STIKINQPDQAGG 191
           QALADEYGIKFFETSAKTNLNVE+VFFSIARDIKQRLAD+D+R E   +I I   DQ+G 
Sbjct: 145 QALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADSDTRQEAQPSITIKPADQSG- 203

Query: 192 VGQAAQKSACCG 203
             QAA KSACCG
Sbjct: 204 -NQAAAKSACCG 214

Beta vulgaris (taxid: 161934)

>sp|Q9LZD4|RAE1D_ARATH Ras-related protein RABE1d OS=Arabidopsis thaliana GN=RABE1D PE=1 SV=1

 Score =  319 bits (817), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 162/190 (85%), Positives = 175/190 (92%), Gaps = 1/190 (0%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLLLRFSD +FTTSFITTIGIDFKIRT+ELDGKRIKLQIWDTAGQERFRTITTAY
Sbjct: 25  GVGKSCLLLRFSDDTFTTSFITTIGIDFKIRTVELDGKRIKLQIWDTAGQERFRTITTAY 84

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGAMGILLVYDVTDESSFNNIRNW++NIEQHASDNVNK+LVGNKADMDESKRAVPT+KG
Sbjct: 85  YRGAMGILLVYDVTDESSFNNIRNWMKNIEQHASDNVNKILVGNKADMDESKRAVPTAKG 144

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGV 192
           QALADEYGIKFFETSAKTNLNVE VF SIA+DIKQRL +TD+++EP  IKI + D A   
Sbjct: 145 QALADEYGIKFFETSAKTNLNVENVFMSIAKDIKQRLTETDTKAEPQGIKITKQDTAAS- 203

Query: 193 GQAAQKSACC 202
              A+KSACC
Sbjct: 204 SSTAEKSACC 213

Involved in membrane trafficking from the Golgi to the plasma membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SF91|RAE1E_ARATH Ras-related protein RABE1e OS=Arabidopsis thaliana GN=RABE1E PE=1 SV=1

 Score =  311 bits (798), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 159/191 (83%), Positives = 173/191 (90%), Gaps = 1/191 (0%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLLLRFSD +FTTSFITTIGIDFKIRT+ELDGKRIKLQIWDTAGQERFRTITTAY
Sbjct: 25  GVGKSCLLLRFSDDTFTTSFITTIGIDFKIRTVELDGKRIKLQIWDTAGQERFRTITTAY 84

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGAMGILLVYDVTDESSFNNIRNW++NIEQHASD+VNK+LVGNKADMDESKRAVPTSKG
Sbjct: 85  YRGAMGILLVYDVTDESSFNNIRNWMKNIEQHASDSVNKILVGNKADMDESKRAVPTSKG 144

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPD-QAGG 191
           QALADEYGIKFFETSAKTN NVEQVF SIA+DIKQRL ++D+++EP  IKI + D     
Sbjct: 145 QALADEYGIKFFETSAKTNQNVEQVFLSIAKDIKQRLTESDTKAEPQGIKITKQDANKAS 204

Query: 192 VGQAAQKSACC 202
                +KSACC
Sbjct: 205 SSSTNEKSACC 215

Involved in membrane trafficking from the Golgi to the plasma membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|P20791|RAB8B_DICDI Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1

 Score =  274 bits (701), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 136/201 (67%), Positives = 159/201 (79%), Gaps = 12/201 (5%)

Query: 3   FLLRIYF-ERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 61
           FL+++      GVGKSCLLLRFSDGSFT SFI TIGIDFKIRTIEL+GKRIKLQIWDTAG
Sbjct: 14  FLVKLLLIGDSGVGKSCLLLRFSDGSFTPSFIATIGIDFKIRTIELEGKRIKLQIWDTAG 73

Query: 62  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 121
           QERFRTITTAYYRGAMGILLVYDVTDE SF +IRNWIRNIEQHASD+VNK+L+GNK DM 
Sbjct: 74  QERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNWIRNIEQHASDSVNKMLIGNKCDMT 133

Query: 122 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTI 181
           E K+ V +S+G++LADEYGIKF ETSAK ++NVE+ F  +A+DIK+R+ DT         
Sbjct: 134 E-KKVVDSSRGKSLADEYGIKFLETSAKNSVNVEEAFIGLAKDIKKRMIDTP-------- 184

Query: 182 KINQPDQAGGVGQAAQKSACC 202
             N PD    +    +K+ CC
Sbjct: 185 --NDPDHTICITPNNKKNTCC 203

Protein transport. Probably involved in vesicular traffic.

Dictyostelium discoideum (taxid: 44689)

>sp|P20790|RAB8A_DICDI Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1

 Score =  274 bits (701), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 136/190 (71%), Positives = 158/190 (83%), Gaps = 6/190 (3%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLLLRFS+ SFT SFITTIGIDFKIRTIEL+GKRIKLQIWDTAGQERFRTITTAY
Sbjct: 25  GVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAY 84

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGAMGILLVYDVTDE SF NIRNWIRNIEQHA+D+VNK+L+GNK DM E K+ V +S+G
Sbjct: 85  YRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAE-KKVVDSSRG 143

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGV 192
           ++LADEYGIKF ETSAK ++NVE+ F S+A+DIK+R+ DT +  +P  +   QP    G 
Sbjct: 144 KSLADEYGIKFLETSAKNSINVEEAFISLAKDIKKRMIDTPNE-QPQVV---QPGTNLGA 199

Query: 193 GQAAQKSACC 202
               +K ACC
Sbjct: 200 NN-NKKKACC 208

Protein transport. Probably involved in vesicular traffic.

Dictyostelium discoideum (taxid: 44689)

>sp|P36861|YPTV2_VOLCA GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1

 Score =  254 bits (648), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 118/194 (60%), Positives = 150/194 (77%), Gaps = 4/194 (2%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLLLRF+D  FT+SFITTIGIDFKI+ +++DGK +KLQIWDTAGQERFRTIT+AY
Sbjct: 23  GVGKSCLLLRFTDDMFTSSFITTIGIDFKIKKVDVDGKLVKLQIWDTAGQERFRTITSAY 82

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA GI+LVYD+TDE+SFNN+RNW+RNIEQHASDNVNK+LVGNK D+ E KR V  ++G
Sbjct: 83  YRGAQGIILVYDITDEASFNNVRNWMRNIEQHASDNVNKILVGNKLDLAEDKRVVSIARG 142

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQA--- 189
           QALADE+G +F+ETSAK N++VE+ F ++A+D+  R+    +  +    +     Q    
Sbjct: 143 QALADEFGFRFYETSAKDNVHVEEAFIAVAKDVLARMEGEHANQQLLQQQQLSAAQPVRL 202

Query: 190 -GGVGQAAQKSACC 202
             G    AQ  +CC
Sbjct: 203 TSGSPSPAQGKSCC 216

Protein transport. Probably involved in vesicular traffic.

Volvox carteri (taxid: 3067)

>sp|P17609|YPT2_SCHPO GTP-binding protein ypt2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ypt2 PE=3 SV=1

 Score =  248 bits (633), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 118/162 (72%), Positives = 140/162 (86%), Gaps = 1/162 (0%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLLLRFS+ SFT SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY
Sbjct: 19  GVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 78

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGAMGILL+YDVTD+ SF+N+R W  N+EQHAS+NV K+L+GNK D  E +R V   +G
Sbjct: 79  YRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDC-EDQRQVSFEQG 137

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDS 174
           QALADE G+KF E SAKTN+NV++ FF++AR+IK++  D ++
Sbjct: 138 QALADELGVKFLEASAKTNVNVDEAFFTLAREIKKQKIDAEN 179

Protein transport. Probably involved in vesicular traffic.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q4R5P1|RAB8A_MACFA Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2 SV=1

 Score =  240 bits (612), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 117/180 (65%), Positives = 146/180 (81%), Gaps = 6/180 (3%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGK+C+L RFS+ +F ++FI+TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY
Sbjct: 18  GVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 77

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK D+++ KR V   +G
Sbjct: 78  YRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERG 136

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEP----STIKINQPDQ 188
           + LA +YGIKF ETSAK N+NVE  FF++ARDIK ++      + P      +KI  PDQ
Sbjct: 137 EKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKIT-PDQ 195

May be involved in vesicular trafficking and neurotransmitter release. Together with RAB11A, RAB3IP, the exocyst complex, PARD3, PRKCI, ANXA2, CDC42 and DNMBP promotes transcytosis of PODXL to the apical membrane initiation sites (AMIS), apical surface formation and lumenogenesis. Together with MYO5B and RAB11A participates in epithelial cell polarization.

Macaca fascicularis (taxid: 9541)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
225435058	216	PREDICTED: ras-related protein RABE1c [V	0.931	0.884	0.958	1e-104
147783308	216	hypothetical protein VITISV_022421 [Viti	0.931	0.884	0.958	1e-104
302595187	216	Rab1 [Hevea brasiliensis]	0.931	0.884	0.958	1e-104
255587494	216	protein with unknown function [Ricinus c	0.931	0.884	0.958	1e-103
385888878	216	RabE1 [Nicotiana benthamiana]	0.931	0.884	0.952	1e-103
363807324	214	uncharacterized protein LOC100775804 [Gl	0.926	0.887	0.958	1e-102
327505559	216	Rab3 [Hevea brasiliensis]	0.931	0.884	0.947	1e-102
449460967	216	PREDICTED: ras-related protein RABE1c-li	0.931	0.884	0.952	1e-102
225449603	216	PREDICTED: ras-related protein RABE1c [V	0.931	0.884	0.947	1e-102
15238542	216	Ras-related protein Rab-8A [Arabidopsis	0.931	0.884	0.942	1e-102

>gi|225435058|ref|XP_002284365.1| PREDICTED: ras-related protein RABE1c [Vitis vinifera] gi|297746128|emb|CBI16184.3| unnamed protein product [Vitis vinifera]

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 183/191 (95%), Positives = 188/191 (98%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY
Sbjct: 25  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 84

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK+LVGNKADMDESKRAVPTSKG
Sbjct: 85  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKG 144

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGV 192
           QALADEYGIKFFETSAKTNLNVE+VFFSIARDIKQRLADTDSR+EP+ I+INQPDQA GV
Sbjct: 145 QALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPTAIRINQPDQASGV 204

Query: 193 GQAAQKSACCG 203
           GQ AQKSACCG
Sbjct: 205 GQTAQKSACCG 215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147783308|emb|CAN64127.1| hypothetical protein VITISV_022421 [Vitis vinifera]

 Score =  382 bits (980), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 183/191 (95%), Positives = 188/191 (98%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY
Sbjct: 25  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 84

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK+LVGNKADMDESKRAVPTSKG
Sbjct: 85  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKG 144

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGV 192
           QALADEYGIKFFETSAKTNLNVE+VFFSIARDIKQRLADTDSR+EP+ I+INQPDQA GV
Sbjct: 145 QALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPTAIRINQPDQAXGV 204

Query: 193 GQAAQKSACCG 203
           GQ AQKSACCG
Sbjct: 205 GQTAQKSACCG 215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302595187|gb|ADL59582.1| Rab1 [Hevea brasiliensis]

 Score =  382 bits (980), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 183/191 (95%), Positives = 188/191 (98%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY
Sbjct: 25  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 84

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK+LVGNKADMDESKRAVPTSKG
Sbjct: 85  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKG 144

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGV 192
           QALAD+YGIKFFETSAKTNLNVE+VFFSIARDIKQRLADTDS++EP TIKINQPDQAGG 
Sbjct: 145 QALADKYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEPQTIKINQPDQAGGA 204

Query: 193 GQAAQKSACCG 203
            QAAQKSACCG
Sbjct: 205 NQAAQKSACCG 215

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587494|ref|XP_002534292.1| protein with unknown function [Ricinus communis] gi|223525564|gb|EEF28091.1| protein with unknown function [Ricinus communis]

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 183/191 (95%), Positives = 186/191 (97%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY
Sbjct: 25  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 84

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK+LVGNKADMDESKRAVPTSKG
Sbjct: 85  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKG 144

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGV 192
           QALADEYGIKFFETSAKTNLNVE+VFFSIARDIKQRLADTDSR+EP TIKINQPDQAG  
Sbjct: 145 QALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIKINQPDQAGSA 204

Query: 193 GQAAQKSACCG 203
            QAA KSACCG
Sbjct: 205 SQAAPKSACCG 215

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|385888878|gb|AFI98561.1| RabE1 [Nicotiana benthamiana]

 Score =  378 bits (971), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 182/191 (95%), Positives = 186/191 (97%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY
Sbjct: 25  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 84

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK+LVGNKADMDESKRAVPTSKG
Sbjct: 85  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKG 144

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGV 192
           QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDS++EPST+KINQPD   G 
Sbjct: 145 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSKAEPSTLKINQPDAGAGG 204

Query: 193 GQAAQKSACCG 203
            QAAQKSACCG
Sbjct: 205 SQAAQKSACCG 215

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807324|ref|NP_001242369.1| uncharacterized protein LOC100775804 [Glycine max] gi|255647140|gb|ACU24038.1| unknown [Glycine max]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 183/191 (95%), Positives = 189/191 (98%), Gaps = 1/191 (0%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY
Sbjct: 25  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 84

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGAMGILLVYDVTDE+SFNNIRNWIRNIEQHASDNVNK+LVGNKADMDESKRAVPTSKG
Sbjct: 85  YRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKG 144

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGV 192
           QALADEYGIKFFETSAKTNLNVE+VFFSIARDIKQRLADTDS++EPSTIKINQ DQ+GG 
Sbjct: 145 QALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEPSTIKINQ-DQSGGA 203

Query: 193 GQAAQKSACCG 203
           GQAAQKSACCG
Sbjct: 204 GQAAQKSACCG 214

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|327505559|gb|AEA92307.1| Rab3 [Hevea brasiliensis]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/191 (94%), Positives = 187/191 (97%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY
Sbjct: 25  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 84

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK+LVGNKADMDESKRAVPTSKG
Sbjct: 85  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKG 144

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGV 192
           QALADEYGIKFFETSAKTNLNVE+VFFSIARDIK+RLA+TDS++EP TIKINQPDQA   
Sbjct: 145 QALADEYGIKFFETSAKTNLNVEEVFFSIARDIKKRLAETDSKAEPQTIKINQPDQAASG 204

Query: 193 GQAAQKSACCG 203
           GQAAQKSACCG
Sbjct: 205 GQAAQKSACCG 215

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460967|ref|XP_004148215.1| PREDICTED: ras-related protein RABE1c-like [Cucumis sativus] gi|449528087|ref|XP_004171038.1| PREDICTED: ras-related protein RABE1c-like [Cucumis sativus]

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 182/191 (95%), Positives = 185/191 (96%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY
Sbjct: 25  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 84

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG
Sbjct: 85  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 144

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGV 192
           QALADEYGIKFFETSAKTNLNVE+VFFSI RDIKQRLADTDS++EPSTIKINQ DQ    
Sbjct: 145 QALADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQRLADTDSKAEPSTIKINQQDQGANA 204

Query: 193 GQAAQKSACCG 203
           GQAAQKSACCG
Sbjct: 205 GQAAQKSACCG 215

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449603|ref|XP_002284071.1| PREDICTED: ras-related protein RABE1c [Vitis vinifera] gi|296086273|emb|CBI31714.3| unnamed protein product [Vitis vinifera]

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/191 (94%), Positives = 186/191 (97%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY
Sbjct: 25  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 84

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG
Sbjct: 85  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 144

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGV 192
           QALADEYGIKFFETSAKTNLNVE+VFFSIA+DIKQRLA+TDS++EP TIKINQPDQA   
Sbjct: 145 QALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAETDSKAEPQTIKINQPDQAANG 204

Query: 193 GQAAQKSACCG 203
           GQA QKSACCG
Sbjct: 205 GQAPQKSACCG 215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238542|ref|NP_200792.1| Ras-related protein Rab-8A [Arabidopsis thaliana] gi|9757904|dbj|BAB08351.1| Rab-type small GTP-binding protein-like [Arabidopsis thaliana] gi|28393504|gb|AAO42173.1| putative GTP-binding protein ara-3 [Arabidopsis thaliana] gi|28973447|gb|AAO64048.1| putative GTP-binding protein ara-3 [Arabidopsis thaliana] gi|332009857|gb|AED97240.1| Ras-related protein Rab-8A [Arabidopsis thaliana]

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/191 (94%), Positives = 186/191 (97%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY
Sbjct: 25  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 84

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK+LVGNKADMDESKRAVP SKG
Sbjct: 85  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPKSKG 144

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGV 192
           QALADEYGIKFFETSAKTNLNVE+VFFSIA+DIKQRLADTDSR+EP+TIKI+Q DQA G 
Sbjct: 145 QALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLADTDSRAEPATIKISQTDQAAGA 204

Query: 193 GQAAQKSACCG 203
           GQA QKSACCG
Sbjct: 205 GQATQKSACCG 215

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
TAIR|locus:2168103	216	AT5G59840 [Arabidopsis thalian	0.931	0.884	0.848	1.3e-82
TAIR|locus:2075251	216	RABE1c [Arabidopsis thaliana (	0.931	0.884	0.842	1.7e-82
TAIR|locus:2084056	216	RAB8 "RAB GTPase homolog 8" [A	0.931	0.884	0.827	8.5e-81
TAIR|locus:2142684	216	RAB8C "RAB GTPase homolog 8C"	0.921	0.875	0.768	4e-74
TAIR|locus:2085089	218	RABE1e "RAB GTPase homolog E1E	0.926	0.871	0.748	4.1e-72
DICTYBASE|DDB_G0280043	208	rab8A "Rab GTPase" [Dictyostel	0.897	0.884	0.636	2.5e-58
DICTYBASE|DDB_G0276399	203	rab8B "Rab GTPase" [Dictyostel	0.921	0.931	0.601	1.2e-56
ASPGD|ASPL0000069804	206	srgA [Emericella nidulans (tax	0.956	0.951	0.559	3.8e-53
POMBASE|SPAC9E9.07c	200	ypt2 "GTPase Ypt2" [Schizosacc	0.785	0.805	0.635	9.2e-52
UNIPROTKB|P61007	207	RAB8A "Ras-related protein Rab	0.897	0.888	0.570	6.5e-51

TAIR|locus:2168103 AT5G59840 [Arabidopsis thaliana (taxid:3702)]

 Score = 828 (296.5 bits), Expect = 1.3e-82, P = 1.3e-82
 Identities = 162/191 (84%), Positives = 168/191 (87%)

Query:    13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
             GVGKSCLLLR                  KIRTIELDGKRIKLQIWDTAGQERFRTITTAY
Sbjct:    25 GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 84

Query:    73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
             YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK+LVGNKADMDESKRAVP SKG
Sbjct:    85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPKSKG 144

Query:   133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGV 192
             QALADEYGIKFFETSAKTNLNVE+VFFSIA+DIKQRLADTDSR+EP+TIKI+Q DQA G 
Sbjct:   145 QALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLADTDSRAEPATIKISQTDQAAGA 204

Query:   193 GQAAQKSACCG 203
             GQA QKSACCG
Sbjct:   205 GQATQKSACCG 215

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2075251 RABE1c [Arabidopsis thaliana (taxid:3702)]

 Score = 827 (296.2 bits), Expect = 1.7e-82, P = 1.7e-82
 Identities = 161/191 (84%), Positives = 168/191 (87%)

Query:    13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
             GVGKSCLLLR                  KIRTIELDGKRIKLQIWDTAGQERFRTITTAY
Sbjct:    25 GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 84

Query:    73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
             YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK+LVGNKADMDESKRAVPT+KG
Sbjct:    85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKG 144

Query:   133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGV 192
             QALADEYGIKFFETSAKTNLNVE+VFFSI RDIKQRL+DTDSR+EP+TIKI+Q DQA G 
Sbjct:   145 QALADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQRLSDTDSRAEPATIKISQTDQAAGA 204

Query:   193 GQAAQKSACCG 203
             GQA QKSACCG
Sbjct:   205 GQATQKSACCG 215

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0009873 "ethylene mediated signaling pathway" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0042732 "D-xylose metabolic process" evidence=RCA

TAIR|locus:2084056 RAB8 "RAB GTPase homolog 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 811 (290.5 bits), Expect = 8.5e-81, P = 8.5e-81
 Identities = 158/191 (82%), Positives = 165/191 (86%)

Query:    13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
             GVGKSCLLLR                  KIRTIELDGKRIKLQIWDTAGQERFRTITTAY
Sbjct:    25 GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 84

Query:    73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
             YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD+VNK+LVGNKADMDESKRAVP SKG
Sbjct:    85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDSVNKILVGNKADMDESKRAVPKSKG 144

Query:   133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGV 192
             QALADEYG+KFFETSAKTNLNVE+VFFSIA+DIKQRLADTD+R+EP TIKINQ DQ  G 
Sbjct:   145 QALADEYGMKFFETSAKTNLNVEEVFFSIAKDIKQRLADTDARAEPQTIKINQSDQGAGT 204

Query:   193 GQAAQKSACCG 203
              QA QKSACCG
Sbjct:   205 SQATQKSACCG 215

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2142684 RAB8C "RAB GTPase homolog 8C" [Arabidopsis thaliana (taxid:3702)]

 Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
 Identities = 146/190 (76%), Positives = 158/190 (83%)

Query:    13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
             GVGKSCLLLR                  KIRT+ELDGKRIKLQIWDTAGQERFRTITTAY
Sbjct:    25 GVGKSCLLLRFSDDTFTTSFITTIGIDFKIRTVELDGKRIKLQIWDTAGQERFRTITTAY 84

Query:    73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
             YRGAMGILLVYDVTDESSFNNIRNW++NIEQHASDNVNK+LVGNKADMDESKRAVPT+KG
Sbjct:    85 YRGAMGILLVYDVTDESSFNNIRNWMKNIEQHASDNVNKILVGNKADMDESKRAVPTAKG 144

Query:   133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGV 192
             QALADEYGIKFFETSAKTNLNVE VF SIA+DIKQRL +TD+++EP  IKI + D A   
Sbjct:   145 QALADEYGIKFFETSAKTNLNVENVFMSIAKDIKQRLTETDTKAEPQGIKITKQDTAAS- 203

Query:   193 GQAAQKSACC 202
                A+KSACC
Sbjct:   204 SSTAEKSACC 213

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2085089 RABE1e "RAB GTPase homolog E1E" [Arabidopsis thaliana (taxid:3702)]

 Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
 Identities = 143/191 (74%), Positives = 156/191 (81%)

Query:    13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
             GVGKSCLLLR                  KIRT+ELDGKRIKLQIWDTAGQERFRTITTAY
Sbjct:    25 GVGKSCLLLRFSDDTFTTSFITTIGIDFKIRTVELDGKRIKLQIWDTAGQERFRTITTAY 84

Query:    73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
             YRGAMGILLVYDVTDESSFNNIRNW++NIEQHASD+VNK+LVGNKADMDESKRAVPTSKG
Sbjct:    85 YRGAMGILLVYDVTDESSFNNIRNWMKNIEQHASDSVNKILVGNKADMDESKRAVPTSKG 144

Query:   133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPD-QAGG 191
             QALADEYGIKFFETSAKTN NVEQVF SIA+DIKQRL ++D+++EP  IKI + D     
Sbjct:   145 QALADEYGIKFFETSAKTNQNVEQVFLSIAKDIKQRLTESDTKAEPQGIKITKQDANKAS 204

Query:   192 VGQAAQKSACC 202
                  +KSACC
Sbjct:   205 SSSTNEKSACC 215

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

DICTYBASE|DDB_G0280043 rab8A "Rab GTPase" [Dictyostelium discoideum (taxid:44689)]

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 121/190 (63%), Positives = 142/190 (74%)

Query:    13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
             GVGKSCLLLR                  KIRTIEL+GKRIKLQIWDTAGQERFRTITTAY
Sbjct:    25 GVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAY 84

Query:    73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
             YRGAMGILLVYDVTDE SF NIRNWIRNIEQHA+D+VNK+L+GNK DM E K+ V +S+G
Sbjct:    85 YRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAE-KKVVDSSRG 143

Query:   133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGV 192
             ++LADEYGIKF ETSAK ++NVE+ F S+A+DIK+R+ DT +  +P  +   QP    G 
Sbjct:   144 KSLADEYGIKFLETSAKNSINVEEAFISLAKDIKKRMIDTPNE-QPQVV---QPGTNLGA 199

Query:   193 GQAAQKSACC 202
                 +K ACC
Sbjct:   200 NNN-KKKACC 208

GO:0033298 "contractile vacuole organization" evidence=IGI

GO:0032794 "GTPase activating protein binding" evidence=IPI

GO:0000331 "contractile vacuole" evidence=IDA

GO:0050708 "regulation of protein secretion" evidence=IMP

GO:0031157 "regulation of aggregate size involved in sorocarp development" evidence=IMP

GO:0030036 "actin cytoskeleton organization" evidence=IMP

GO:0016339 "calcium-dependent cell-cell adhesion" evidence=IMP

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0276399 rab8B "Rab GTPase" [Dictyostelium discoideum (taxid:44689)]

 Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
 Identities = 121/201 (60%), Positives = 144/201 (71%)

Query:     3 FLLRIYF-ERGGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 61
             FL+++      GVGKSCLLLR                  KIRTIEL+GKRIKLQIWDTAG
Sbjct:    14 FLVKLLLIGDSGVGKSCLLLRFSDGSFTPSFIATIGIDFKIRTIELEGKRIKLQIWDTAG 73

Query:    62 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 121
             QERFRTITTAYYRGAMGILLVYDVTDE SF +IRNWIRNIEQHASD+VNK+L+GNK DM 
Sbjct:    74 QERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNWIRNIEQHASDSVNKMLIGNKCDMT 133

Query:   122 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTI 181
             E K+ V +S+G++LADEYGIKF ETSAK ++NVE+ F  +A+DIK+R+ DT     P   
Sbjct:   134 E-KKVVDSSRGKSLADEYGIKFLETSAKNSVNVEEAFIGLAKDIKKRMIDT-----P--- 184

Query:   182 KINQPDQAGGVGQAAQKSACC 202
               N PD    +    +K+ CC
Sbjct:   185 --NDPDHTICITPNNKKNTCC 203

GO:0031157 "regulation of aggregate size involved in sorocarp development" evidence=IMP

GO:0016339 "calcium-dependent cell-cell adhesion" evidence=IMP

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ASPGD|ASPL0000069804 srgA [Emericella nidulans (taxid:162425)]

 Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
 Identities = 113/202 (55%), Positives = 139/202 (68%)

Query:     3 FLLRIYF-ERGGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 61
             FL+++      GVGKSC LLR                  KIRTIELDGKR+KLQIWDTAG
Sbjct:     9 FLIKLLLIGDSGVGKSCCLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRVKLQIWDTAG 68

Query:    62 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 121
             QERFRTITTAYYRGAMGILLVYDVTDE SF NIR W  N+EQHAS+ V+K+L+GNK D +
Sbjct:    69 QERFRTITTAYYRGAMGILLVYDVTDERSFQNIRTWFSNVEQHASEGVHKILIGNKCDWE 128

Query:   122 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTI 181
             E KRAV T +GQ LADE GI F E SAK N+N+E+ F+++A DIK+ + D+    +  + 
Sbjct:   129 E-KRAVTTEQGQQLADELGIPFLEVSAKNNINIEKAFYNLASDIKKGM-DSSKPEQTGSQ 186

Query:   182 KINQPDQAGGV-GQAAQKSACC 202
              ++  +QA G+ G A  K  CC
Sbjct:   187 GVSIDNQASGLSGNAGGK--CC 206

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006906 "vesicle fusion" evidence=IEA

GO:0006887 "exocytosis" evidence=IEA

GO:0006893 "Golgi to plasma membrane transport" evidence=IEA

POMBASE|SPAC9E9.07c ypt2 "GTPase Ypt2" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
 Identities = 103/162 (63%), Positives = 124/162 (76%)

Query:    13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
             GVGKSCLLLR                  KIRTIELDGKRIKLQIWDTAGQERFRTITTAY
Sbjct:    19 GVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 78

Query:    73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
             YRGAMGILL+YDVTD+ SF+N+R W  N+EQHAS+NV K+L+GNK D  E +R V   +G
Sbjct:    79 YRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDC-EDQRQVSFEQG 137

Query:   133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDS 174
             QALADE G+KF E SAKTN+NV++ FF++AR+IK++  D ++
Sbjct:   138 QALADELGVKFLEASAKTNVNVDEAFFTLAREIKKQKIDAEN 179

GO:0003924 "GTPase activity" evidence=TAS

GO:0005525 "GTP binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IC

GO:0006887 "exocytosis" evidence=IMP

GO:0006893 "Golgi to plasma membrane transport" evidence=ISO

GO:0006906 "vesicle fusion" evidence=ISO

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|P61007 RAB8A "Ras-related protein Rab-8A" [Canis lupus familiaris (taxid:9615)]

 Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
 Identities = 109/191 (57%), Positives = 135/191 (70%)

Query:     2 LFLLRIYFERGGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 61
             LF L +  +  GVGK+C+L R                  KIRTIELDGKRIKLQIWDTAG
Sbjct:     8 LFKLLLIGD-SGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAG 66

Query:    62 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 121
             QERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK D++
Sbjct:    67 QERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN 126

Query:   122 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIK----QRLADTDSRSE 177
             + KR V   +G+ LA +YGIKF ETSAK N+NVE  FF++ARDIK    ++L     +  
Sbjct:   127 D-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGS 185

Query:   178 PSTIKINQPDQ 188
                +KI  PDQ
Sbjct:   186 NQGVKIT-PDQ 195

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0045335 "phagocytic vesicle" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0017137 "Rab GTPase binding" evidence=ISS

GO:0007409 "axonogenesis" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0030670 "phagocytic vesicle membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P61007	RAB8A_CANFA	No assigned EC number	0.65	0.8487	0.8405	yes	no
P61006	RAB8A_HUMAN	No assigned EC number	0.65	0.8487	0.8405	yes	no
Q05974	RAB1A_LYMST	No assigned EC number	0.5781	0.8926	0.8926	N/A	no
P70550	RAB8B_RAT	No assigned EC number	0.6348	0.8439	0.8357	yes	no
P61028	RAB8B_MOUSE	No assigned EC number	0.6348	0.8439	0.8357	yes	no
P41924	RYL1_YARLI	No assigned EC number	0.6105	0.8926	0.9014	yes	no
Q05737	YPTM2_MAIZE	No assigned EC number	0.5751	0.8829	0.8916	N/A	no
Q5R4A3	RAB8A_PONAB	No assigned EC number	0.65	0.8487	0.8405	yes	no
P20790	RAB8A_DICDI	No assigned EC number	0.7157	0.8975	0.8846	no	no
P20791	RAB8B_DICDI	No assigned EC number	0.6766	0.9219	0.9310	yes	no
Q2HJI8	RAB8B_BOVIN	No assigned EC number	0.6327	0.8390	0.8309	yes	no
Q01890	YPT1_PHYIN	No assigned EC number	0.5578	0.8975	0.9154	N/A	no
Q9SF91	RAE1E_ARATH	No assigned EC number	0.8324	0.9268	0.8715	no	no
P28186	RAE1C_ARATH	No assigned EC number	0.9371	0.9317	0.8842	yes	no
P17609	YPT2_SCHPO	No assigned EC number	0.7283	0.7853	0.805	yes	no
P36861	YPTV2_VOLCA	No assigned EC number	0.6082	0.9268	0.8755	N/A	no
O24466	RAE1A_ARATH	No assigned EC number	0.9214	0.9317	0.8842	yes	no
Q4R5P1	RAB8A_MACFA	No assigned EC number	0.65	0.8487	0.8405	N/A	no
P22125	RAB1_DIPOM	No assigned EC number	0.5699	0.8878	0.9009	N/A	no
P22127	RAB10_DIPOM	No assigned EC number	0.5631	0.8829	0.905	N/A	no
Q39571	YPTC1_CHLRE	No assigned EC number	0.5833	0.8975	0.9064	N/A	no
Q9LZD4	RAE1D_ARATH	No assigned EC number	0.8526	0.9219	0.875	no	no
Q5KTJ6	RAB13_MESAU	No assigned EC number	0.5730	0.8536	0.8620	N/A	no
P31584	YPTV1_VOLCA	No assigned EC number	0.5578	0.9073	0.9162	N/A	no
Q39433	RB1BV_BETVU	No assigned EC number	0.9010	0.9219	0.8790	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	205
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	1e-110
pfam00071	162	pfam00071, Ras, Ras family	8e-94
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	1e-92
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	3e-90
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	1e-84
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	1e-66
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	1e-66
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	3e-65
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	3e-64
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	3e-63
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	7e-61
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	2e-60
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	1e-59
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	6e-58
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	4e-57
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	2e-56
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	4e-55
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	5e-55
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	7e-54
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	1e-53
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	2e-53
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	4e-53
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	1e-51
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	3e-51
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	7e-51
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	9e-51
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	9e-51
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	1e-48
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	2e-44
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	3e-44
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	2e-43
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	3e-41
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	6e-41
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	3e-40
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	5e-37
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	1e-36
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	3e-36
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	4e-36
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	3e-35
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	4e-35
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	4e-35
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	5e-34
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	8e-34
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	1e-33
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	2e-33
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	6e-33
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	9e-33
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	4e-32
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	1e-31
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	5e-31
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-30
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	2e-30
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	5e-30
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	1e-29
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	2e-29
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	6e-29
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	9e-27
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	1e-26
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	1e-26
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	3e-26
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	4e-26
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	8e-26
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	3e-25
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	7e-23
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	8e-23
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	3e-22
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	2e-21
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	2e-21
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	3e-21
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	8e-21
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	3e-20
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	9e-20
pfam08477	116	pfam08477, Miro, Miro-like protein	5e-18
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	2e-16
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	2e-16
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	8e-16
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	5e-15
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	6e-15
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	7e-14
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	1e-13
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	1e-13
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	3e-13
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	2e-11
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	1e-10
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	1e-10
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	2e-10
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	8e-10
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	2e-09
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	4e-09
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	6e-09
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	2e-07
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	3e-07
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	3e-07
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	3e-07
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	5e-07
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	9e-07
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	2e-06
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	2e-06
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	4e-06
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	5e-06
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	8e-06
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	2e-05
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	2e-05
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	2e-05
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	2e-05
cd01892	180	cd01892, Miro2, Mitochondrial Rho family 2 (Miro2)	4e-05
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	5e-05
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	4e-04
cd01897	167	cd01897, NOG, Nucleolar GTP-binding protein (NOG)	5e-04
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	0.001
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	0.003

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  311 bits (798), Expect = e-110
 Identities = 114/156 (73%), Positives = 138/156 (88%), Gaps = 1/156 (0%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLLLRFS+ SF  SFI+TIGIDFKIRTIELDGK+IKLQIWDTAGQERFRTITT+Y
Sbjct: 13  GVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTSY 72

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGAMGI+LVYD+TDE SF NI+NW+RNI++HAS++V ++LVGNK DM+E KR V   +G
Sbjct: 73  YRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVGNKCDMEE-KRVVSKEEG 131

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
           +ALA EYGIKF ETSAK N+NVE+ F ++A+DI ++
Sbjct: 132 EALAREYGIKFLETSAKANINVEEAFLTLAKDILKK 167

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  270 bits (693), Expect = 8e-94
 Identities = 90/156 (57%), Positives = 113/156 (72%), Gaps = 1/156 (0%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS LL+RF+   F   +I TIG+DF  +TIE+DGK +KLQIWDTAGQERFR +   
Sbjct: 8   GGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQERFRALRPL 67

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YYRGA G LLVYD+T   SF N++ W+  I +HA +NV  VLVGNK D+ E +R V T +
Sbjct: 68  YYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCDL-EDQRVVSTEE 126

Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
           G+ALA E G+ F ETSAKTN NVE+ F  +AR+I +
Sbjct: 127 GEALAKELGLPFMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  267 bits (686), Expect = 1e-92
 Identities = 92/156 (58%), Positives = 125/156 (80%), Gaps = 1/156 (0%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKS LL RF+DG F+  + +TIG+DFK +TIE+DGKR+KLQIWDTAGQERFR+IT++Y
Sbjct: 10  GVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSY 69

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA+G LLVYD+T+  SF N+ NW++ + ++AS NV  +LVGNK+D+ E +R V   + 
Sbjct: 70  YRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVGNKSDL-EEQRQVSREEA 128

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
           +A A+E+G+ FFETSAKTN NVE+ F  +AR+I +R
Sbjct: 129 EAFAEEHGLPFFETSAKTNTNVEEAFEELAREILKR 164

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  261 bits (669), Expect = 3e-90
 Identities = 100/156 (64%), Positives = 131/156 (83%), Gaps = 1/156 (0%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLLLRF+D ++T S+I+TIG+DFKIRTIELDGK +KLQIWDTAGQERFRTIT++Y
Sbjct: 12  GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERFRTITSSY 71

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+   K+ V  ++ 
Sbjct: 72  YRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT-DKKVVDYTEA 130

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
           +  ADE GI F ETSAK   NVE+ F ++AR+IK+R
Sbjct: 131 KEFADELGIPFLETSAKNATNVEEAFMTMAREIKKR 166

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  246 bits (631), Expect = 1e-84
 Identities = 85/151 (56%), Positives = 116/151 (76%), Gaps = 1/151 (0%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGK+ LLLRF D  F+ ++ +TIG+DFK +TIE+DGK++KLQIWDTAGQERFR+IT++Y
Sbjct: 10  GVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQERFRSITSSY 69

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA G +LVYDVT+  SF N+  W+  ++++A  N+  +LVGNK+D+ E +R V T + 
Sbjct: 70  YRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSDL-EDERQVSTEEA 128

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIAR 163
           Q  A E G+ FFETSAKT  NV++ F S+AR
Sbjct: 129 QQFAKENGLLFFETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  201 bits (514), Expect = 1e-66
 Identities = 79/153 (51%), Positives = 107/153 (69%), Gaps = 1/153 (0%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKS LL RF+   F     +TIG++F  RTI++DGK IK QIWDTAGQER+R IT+AY
Sbjct: 13  GVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTAGQERYRAITSAY 72

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA+G LLVYD+T +S+F N+  W++ +  HA  N+  +LVGNK+D+    RAVPT + 
Sbjct: 73  YRGAVGALLVYDITKKSTFENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTEEA 131

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
           +A A++ G+ F ETSA    NVE+ F  +  +I
Sbjct: 132 KAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI 164

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  203 bits (517), Expect = 1e-66
 Identities = 90/182 (49%), Positives = 123/182 (67%), Gaps = 5/182 (2%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKS LLLRF+D +F+ S+ITTIG+DFKIRT+E++G+R+KLQIWDTAGQERFRTIT+ Y
Sbjct: 16  GVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTY 75

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRG  G+++VYDVT+  SF N++ W++ IEQ+  D+V KVLVGNK D D  ++ V T   
Sbjct: 76  YRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKND-DPERKVVETEDA 133

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIAR---DIKQRLADTDSRSEPSTIKINQPDQA 189
              A + GI  FETSAK N+NVE++F  I       K+       + + + +     +  
Sbjct: 134 YKFAGQMGISLFETSAKENINVEEMFNCITELVLRAKKDNLAKQQQQQQNDVVKLPKNSK 193

Query: 190 GG 191
             
Sbjct: 194 RK 195

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  198 bits (505), Expect = 3e-65
 Identities = 75/154 (48%), Positives = 110/154 (71%), Gaps = 3/154 (1%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKS LLLRF+D +F     +TIG+DFK++T+ +DGK++KL IWDTAGQERFRT+T++Y
Sbjct: 10  GVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQERFRTLTSSY 69

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSK 131
           YRGA G++LVYDVT   +F+N+  W+  ++ ++ + +  K+LVGNK  +D+  R V   +
Sbjct: 70  YRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNK--IDKENREVTREE 127

Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
           GQ  A ++ + F ETSAKT + V+Q F  +   I
Sbjct: 128 GQKFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  195 bits (497), Expect = 3e-64
 Identities = 84/145 (57%), Positives = 115/145 (79%), Gaps = 1/145 (0%)

Query: 14  VGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 73
           VGK+  L R++D SFT++F++T+GIDFK++T+  + KRIKLQIWDTAGQER+RTITTAYY
Sbjct: 12  VGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQERYRTITTAYY 71

Query: 74  RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ 133
           RGAMG +L+YD+T+E SFN +++W   I+ ++ DN   +LVGNK DM E +R V   +G+
Sbjct: 72  RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDM-EDERVVSAERGR 130

Query: 134 ALADEYGIKFFETSAKTNLNVEQVF 158
            LAD+ G +FFE SAK N+NV+QVF
Sbjct: 131 QLADQLGFEFFEASAKENINVKQVF 155

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  193 bits (492), Expect = 3e-63
 Identities = 82/153 (53%), Positives = 112/153 (73%), Gaps = 1/153 (0%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLLL+F+D  F      TIG++F  R I +DGK+IKLQIWDTAGQE FR+IT +Y
Sbjct: 14  GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSY 73

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA G LLVYD+T   +FN++ +W+ +  QH++ N+  +L+GNK D+ ES+R V   +G
Sbjct: 74  YRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDL-ESRREVSYEEG 132

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
           +A A E+G+ F ETSAKT  NVE+ F + A++I
Sbjct: 133 EAFAREHGLIFMETSAKTASNVEEAFINTAKEI 165

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  188 bits (478), Expect = 7e-61
 Identities = 95/191 (49%), Positives = 128/191 (67%), Gaps = 10/191 (5%)

Query: 13  GVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GVGK+CLL+RF DG+F   SFI T+GI F  + + +DG ++KLQIWDTAGQERFR++T A
Sbjct: 10  GVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQERFRSVTHA 69

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YYR A  +LL+YDVT++SSF+NIR W+  I ++A  +V  +L+GNKADM   +R V    
Sbjct: 70  YYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKADM-SGERVVKRED 128

Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGG 191
           G+ LA EYG+ F ETSAKT LNVE  F ++A+++K R     S  +P   K    D    
Sbjct: 129 GERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHR-----SVEQPDEPKFKIQDY--- 180

Query: 192 VGQAAQKSACC 202
           V +  + S CC
Sbjct: 181 VEKQKKSSGCC 191

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  187 bits (476), Expect = 2e-60
 Identities = 90/196 (45%), Positives = 122/196 (62%), Gaps = 7/196 (3%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLLL+F+D  F      TIG++F  R I +D K IKLQIWDTAGQE FR+IT +Y
Sbjct: 16  GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSY 75

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA G LLVYD+T   +FN++ +W+ +  QHA+ N+  +L+GNK D+   +RAV T +G
Sbjct: 76  YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH-RRAVSTEEG 134

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADT--DSRSEPSTIKIN----QP 186
           +  A E+G+ F E SAKT  NVE+ F   A  I +++ D   D  +E   IK+       
Sbjct: 135 EQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKKIQDGVFDVSNESYGIKVGYGAIPG 194

Query: 187 DQAGGVGQAAQKSACC 202
              G  G ++Q   CC
Sbjct: 195 ASGGRDGTSSQGGGCC 210

Length = 210

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  184 bits (467), Expect = 1e-59
 Identities = 80/150 (53%), Positives = 114/150 (76%), Gaps = 1/150 (0%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGK+CLL RF+D  F +S I+TIG+DFK++TIE+DG ++++QIWDTAGQER++TIT  Y
Sbjct: 10  GVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQY 69

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YR A GI LVYD++ E S+ +I  W+ +++++A + V K+L+GNKAD +E KR V   +G
Sbjct: 70  YRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKAD-EEQKRQVGDEQG 128

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIA 162
             LA EYG+ FFETSA TN N+++ F  + 
Sbjct: 129 NKLAKEYGMDFFETSACTNKNIKESFTRLT 158

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  179 bits (456), Expect = 6e-58
 Identities = 71/153 (46%), Positives = 100/153 (65%), Gaps = 1/153 (0%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
            VGKS ++LRF    F+ +  +TIG  F  +T+ LD   +K +IWDTAGQER+R++   Y
Sbjct: 11  SVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMY 70

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA   ++VYD+T E SF   ++W++ +++H   N+   L GNKAD+ ESKR V T + 
Sbjct: 71  YRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGNKADL-ESKRQVSTEEA 129

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
           Q  ADE G+ F ETSAKT  NV ++F  IAR +
Sbjct: 130 QEYADENGLLFMETSAKTGENVNELFTEIARKL 162

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  177 bits (451), Expect = 4e-57
 Identities = 74/154 (48%), Positives = 108/154 (70%), Gaps = 2/154 (1%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
            VGK+C++ RF  G+F+     TIG+DF ++T+E+ GKR+KLQIWDTAGQERFRTIT +Y
Sbjct: 13  NVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSY 72

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YR A G ++ YD+T  SSF ++ +WI  +E++ + NV  +L+GNK D++E +R V   + 
Sbjct: 73  YRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEE-QREVLFEEA 131

Query: 133 QALADEYGIKF-FETSAKTNLNVEQVFFSIARDI 165
             LA+ YGI    ETSAK + NVE+ F  +A ++
Sbjct: 132 CTLAEHYGILAVLETSAKESSNVEEAFLLMATEL 165

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  175 bits (447), Expect = 2e-56
 Identities = 66/154 (42%), Positives = 97/154 (62%), Gaps = 1/154 (0%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+ L+LR+ +  F     +T    F  +T+ + GKRI L IWDTAGQER+  +   
Sbjct: 9   GRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPI 68

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YYR A G +LVYD+TD  SF  ++ WI+ ++Q   +N++ V+VGNK D+ E +R V  S+
Sbjct: 69  YYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDL-ERQRVVSKSE 127

Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
            +  A   G K FETSAKT   +E++F S+A+ +
Sbjct: 128 AEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  172 bits (437), Expect = 4e-55
 Identities = 74/150 (49%), Positives = 105/150 (70%), Gaps = 1/150 (0%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGK+CL+ RF+ G F      TIG+DF I+T+E+ G++IKLQIWDTAGQERFR+IT +Y
Sbjct: 17  GVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSY 76

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YR A  ++L YD+T E SF  +  W+R IEQ+A++ V  +LVGNK D+ E +R V   + 
Sbjct: 77  YRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAE-RREVSQQRA 135

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIA 162
           +  +D   + + ETSAK + NVE++F  +A
Sbjct: 136 EEFSDAQDMYYLETSAKESDNVEKLFLDLA 165

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  172 bits (438), Expect = 5e-55
 Identities = 74/155 (47%), Positives = 105/155 (67%), Gaps = 12/155 (7%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD----------GKRIKLQIWDTAGQ 62
           GVGK+  L R++D  F   FITT+GIDF+ + +  +            R+ LQ+WDTAGQ
Sbjct: 14  GVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVHLQLWDTAGQ 73

Query: 63  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMD 121
           ERFR++TTA++R AMG LL++D+T E SF N+RNW+  ++ HA  +N + VL+GNKAD+ 
Sbjct: 74  ERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPDIVLIGNKADL- 132

Query: 122 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ 156
             +R V   + + LAD+YGI +FETSA T  NVE+
Sbjct: 133 PDQREVSERQARELADKYGIPYFETSAATGQNVEK 167

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  169 bits (429), Expect = 7e-54
 Identities = 74/155 (47%), Positives = 102/155 (65%), Gaps = 1/155 (0%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLL +F++  F      TIG++F  R IE++G++IKLQIWDTAGQERFR +T +Y
Sbjct: 12  GVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSY 71

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA G L+VYD+T  S++N++ +W+ +     + N    L+GNKAD++   R V   + 
Sbjct: 72  YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQ-RDVTYEEA 130

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
           +  ADE G+ F E SAKT  NVE  F   A+ I Q
Sbjct: 131 KQFADENGLLFLECSAKTGENVEDAFLETAKKIYQ 165

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  170 bits (432), Expect = 1e-53
 Identities = 79/194 (40%), Positives = 118/194 (60%), Gaps = 5/194 (2%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKS +L RF+   F     +TIG++F  RT++++GK +K QIWDTAGQER+R IT+AY
Sbjct: 22  GVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAY 81

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA+G LLVYD+T   +F+N++ W+R +  HA  N+  ++ GNK+D++   R+V    G
Sbjct: 82  YRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHL-RSVAEEDG 140

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGV 192
           QALA++ G+ F ETSA    NVE+ F +I  +I   ++     ++ +      P Q   +
Sbjct: 141 QALAEKEGLSFLETSALEATNVEKAFQTILLEIYHIISKKALAAQEAAANSGLPGQGTTI 200

Query: 193 G----QAAQKSACC 202
                    K  CC
Sbjct: 201 NVADTSGNNKRGCC 214

Length = 216

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  169 bits (431), Expect = 2e-53
 Identities = 72/163 (44%), Positives = 109/163 (66%), Gaps = 9/163 (5%)

Query: 14  VGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAY 72
           VGKS LL RF++G F      T+G+DF  R IE+  G RIKLQ+WDTAGQERFR+IT +Y
Sbjct: 13  VGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSY 72

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIR----NIEQHASDNVNKVLVGNKADMDESKRAVP 128
           YR ++G+LLV+D+T+  SF ++ +W+     +I+ H       +LVG+K D++ S+R V 
Sbjct: 73  YRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHR---PVFILVGHKCDLE-SQRQVT 128

Query: 129 TSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLAD 171
             + + LA + G+K+ ETSA+T  NVE+ F  + ++I +R+  
Sbjct: 129 REEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIKR 171

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  167 bits (424), Expect = 4e-53
 Identities = 74/153 (48%), Positives = 97/153 (63%), Gaps = 1/153 (0%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           G GKSCLL +F +  F      TIG++F  R + + GK +KLQIWDTAGQERFR++T +Y
Sbjct: 10  GTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQERFRSVTRSY 69

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA G LLVYD+T   SFN + NW+ +    AS ++  +LVGNK D+++  R V   + 
Sbjct: 70  YRGAAGALLVYDITSRESFNALTNWLTDARTLASPDIVIILVGNKKDLED-DREVTFLEA 128

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
              A E G+ F ETSA T  NVE+ F   AR I
Sbjct: 129 SRFAQENGLLFLETSALTGENVEEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  164 bits (417), Expect = 1e-51
 Identities = 77/168 (45%), Positives = 121/168 (72%), Gaps = 2/168 (1%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGK+ L+ RF+D +F  +  +T+G+DFKI+T+EL GK+I+LQIWDTAGQERF +IT+AY
Sbjct: 10  GVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAY 69

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YR A GI+LVYD+T + +F+++  W++ I+++AS++   +LVGNK D  E+ R +   +G
Sbjct: 70  YRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC-ETDREITRQQG 128

Query: 133 QALADEY-GIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPS 179
           +  A +  G++F E SAK N NV+++F  +  DI +++     R+E S
Sbjct: 129 EKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDILRNELS 176

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  162 bits (412), Expect = 3e-51
 Identities = 65/150 (43%), Positives = 95/150 (63%), Gaps = 1/150 (0%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
            VGK+ ++ RF   +F   +  TIGIDF  +T+ +D K ++LQ+WDTAGQERFR++  +Y
Sbjct: 10  SVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQERFRSLIPSY 69

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
            R +   ++VYD+T+  SF+N   WI ++     ++V  VLVGNK D+ + KR V T +G
Sbjct: 70  IRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSD-KRQVSTEEG 128

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIA 162
           +  A E    F ETSAK   NV+Q+F  IA
Sbjct: 129 EKKAKENNAMFIETSAKAGHNVKQLFKKIA 158

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  161 bits (409), Expect = 7e-51
 Identities = 67/155 (43%), Positives = 92/155 (59%), Gaps = 3/155 (1%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L +RF  G F   +  TI  D   + I +DG+   L I DTAGQE F  +   
Sbjct: 8   GGVGKSALTIRFVSGEFVEEYDPTIE-DSYRKQIVVDGETYTLDILDTAGQEEFSAMRDQ 66

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKVLVGNKADMDESKRAVPTS 130
           Y R   G +LVY +T   SF  I+N    I      ++V  VLVGNK D++   R V T 
Sbjct: 67  YIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIVLVGNKCDLENE-RQVSTE 125

Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
           +G+ALA+E+G  F ETSAKTN+N++++F ++ R+I
Sbjct: 126 EGEALAEEWGCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  161 bits (410), Expect = 9e-51
 Identities = 68/161 (42%), Positives = 100/161 (62%), Gaps = 6/161 (3%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGK+ L+ ++ +  F+  +  TIG DF  + + +D + + LQIWDTAGQERF+++  A+
Sbjct: 10  GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQERFQSLGVAF 69

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAVP 128
           YRGA   +LVYDVT+  SF ++ +W       AS    +N   V++GNK D++E KR V 
Sbjct: 70  YRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEE-KRQVS 128

Query: 129 TSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIARDIKQR 168
           T K Q      G I +FETSAK  +NV+Q F +IAR   ++
Sbjct: 129 TKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIARLALEQ 169

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  161 bits (409), Expect = 9e-51
 Identities = 74/160 (46%), Positives = 105/160 (65%), Gaps = 6/160 (3%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-TITTA 71
            VGK+CL  RF  G F      TIG+DF+ RT+E+DG+RIK+Q+WDTAGQERFR ++   
Sbjct: 12  NVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQH 71

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTS 130
           YYR    ++ VYDVT+ +SF+++ +WI   EQH+  + V ++LVGNK D+ E  + VPT 
Sbjct: 72  YYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQ-VPTD 130

Query: 131 KGQALADEYGIKFFETSAK---TNLNVEQVFFSIARDIKQ 167
             Q  AD + +  FETSAK    N +VE +F ++A  +K 
Sbjct: 131 LAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKLKS 170

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  157 bits (398), Expect = 1e-48
 Identities = 87/194 (44%), Positives = 117/194 (60%), Gaps = 11/194 (5%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKS LL+ F   S       TIG+DFKI+ + + GKR+KL IWDTAGQERFRT+T++Y
Sbjct: 24  GVGKSSLLVSFISSS-VEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSY 82

Query: 73  YRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASD-NVNKVLVGNKADMDESKRAVPTS 130
           YR A GI+LVYDVT   +F N+ + W + +E ++++ +  K+LVGNK D  ES+R V   
Sbjct: 83  YRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDR-ESERDVSRE 141

Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ--RLADTDSRSEPSTIKINQPDQ 188
           +G ALA E+G  F E SAKT  NVEQ F  +A  I +   L +  S +    I   +P+ 
Sbjct: 142 EGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEVPSLLEEGSTAVKRNILKQKPEH 201

Query: 189 AGGVGQAAQKSACC 202
                Q      CC
Sbjct: 202 -----QPPPNGGCC 210

Length = 211

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  145 bits (367), Expect = 2e-44
 Identities = 68/158 (43%), Positives = 95/158 (60%), Gaps = 3/158 (1%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L ++F  G F   +  TI  D   + IE+DG+   L I DTAGQE F  +   
Sbjct: 9   GGVGKSALTIQFIQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQ 67

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTS 130
           Y R   G LLVY +TD  SF  I+ +   I +    D+V  VLVGNK D+ ES+R V T 
Sbjct: 68  YMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDL-ESERVVSTE 126

Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
           +G+ LA ++G  F ETSAK  +NV++ F+ + R+I+++
Sbjct: 127 EGKELARQWGCPFLETSAKERVNVDEAFYDLVREIRKK 164

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  145 bits (367), Expect = 3e-44
 Identities = 67/158 (42%), Positives = 92/158 (58%), Gaps = 3/158 (1%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L ++F  G F   +  TI  D   + IE+DG+   L I DTAGQE F  +   
Sbjct: 11  GGVGKSALTIQFVQGHFVDEYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQ 69

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKVLVGNKADMDESKRAVPTS 130
           Y R   G LLVY +TD  SF  I  +   I      D+V  VLVGNK D+ E++R V T 
Sbjct: 70  YMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDDVPIVLVGNKCDL-ENERVVSTE 128

Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
           +G+ LA ++G  F ETSAK  +NV++ F+ + R+I++ 
Sbjct: 129 EGKELARQWGCPFLETSAKERINVDEAFYDLVREIRKS 166

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score =  143 bits (362), Expect = 2e-43
 Identities = 72/155 (46%), Positives = 99/155 (63%), Gaps = 2/155 (1%)

Query: 14  VGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 73
           VGK  +L    DGS  + +   +GID+K  TI LDG+R+KLQ+WDT+GQ RF TI  +Y 
Sbjct: 17  VGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYS 76

Query: 74  RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ 133
           RGA GI+LVYD+T+  SF+ I  WI+ I++HA   V K+LVGN+  +   KR V T + Q
Sbjct: 77  RGAQGIILVYDITNRWSFDGIDRWIKEIDEHAP-GVPKILVGNRLHL-AFKRQVATEQAQ 134

Query: 134 ALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
           A A+  G+ FFE S   N N+ + F  +AR +  R
Sbjct: 135 AYAERNGMTFFEVSPLCNFNITESFTELARIVLMR 169

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  137 bits (346), Expect = 3e-41
 Identities = 52/158 (32%), Positives = 91/158 (57%), Gaps = 6/158 (3%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSC++ R+ +G F + ++ TIGID+ ++ + +  K +++  +D +G   +  +   +
Sbjct: 10  GVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEF 69

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQH-----ASDNVNKVLVGNKADMDESKRAV 127
           Y+   G+LLVYDVTD  SF  + +W++ ++Q        +N+  V+  NK D     RAV
Sbjct: 70  YKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKID-LTKHRAV 128

Query: 128 PTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
              +G+  A+  G K+FETSA T   V ++F ++   I
Sbjct: 129 SEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSI 166

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  137 bits (347), Expect = 6e-41
 Identities = 59/199 (29%), Positives = 104/199 (52%), Gaps = 16/199 (8%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRI-KLQIWDTAGQERFRTITTA 71
           GVGK+ ++ R+  G F+  +  TIG+DF ++ IE D   + +LQ+WD AGQERF  +T  
Sbjct: 10  GVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRV 69

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK----VLVGNKADMDESKRAV 127
           YY+GA+G ++V+DVT  S+F  +  W  +++   +    +    +L+ NK D+ + + A 
Sbjct: 70  YYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLANKCDLKKERLAK 129

Query: 128 PTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIARDI---KQRLADTDSRSEPSTIKI 183
              +      E G I +FETSAK N+N+E+    + ++I    + L   +   +      
Sbjct: 130 DPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNILKNDKGLQSPEPDEDNVIDLK 189

Query: 184 NQPDQAGGVGQAAQKSACC 202
            +          ++  +CC
Sbjct: 190 QET-------TTSKSKSCC 201

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  136 bits (343), Expect = 3e-40
 Identities = 71/208 (34%), Positives = 97/208 (46%), Gaps = 21/208 (10%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGK+ LL R     F   +  TIG     +TIE   + IKLQ+WDTAGQE +R++   
Sbjct: 14  GGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPE 73

Query: 72  YYRGAMGILLVYDVTD-ESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD----------- 119
           YYRGA GIL+VYD T  ESS      W+  + + A D+V  +LVGNK D           
Sbjct: 74  YYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEI 133

Query: 120 MDESKRAVPTSKGQALADE---YGIKFFETSAK--TNLNVEQVFFSIARDIKQRLADTDS 174
           +++  R V        A           ETSAK  T  NV ++F  + R + + +     
Sbjct: 134 LNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLLEEIEKLVL 193

Query: 175 RSEPSTIKINQPDQAGGVGQAAQKSACC 202
           ++E   +            QAA  S  C
Sbjct: 194 KNELRQLDRLNNPIE----QAALASFNC 217

Length = 219

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  126 bits (317), Expect = 5e-37
 Identities = 64/157 (40%), Positives = 93/157 (59%), Gaps = 3/157 (1%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L L+F    F   +  T   D   + + LDG+ ++L I DTAGQE +  I   
Sbjct: 9   GGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQLNILDTAGQEDYAAIRDN 67

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTS 130
           Y+R   G LLV+ +TD  SF  +  +   I +    DNV  +LVGNK D+++ KR V   
Sbjct: 68  YFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLED-KRQVSVE 126

Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
           +   LA+++G+ + ETSAKT  NV++VFF + R+I+Q
Sbjct: 127 EAANLAEQWGVNYVETSAKTRANVDKVFFDLVREIRQ 163

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  125 bits (315), Expect = 1e-36
 Identities = 60/150 (40%), Positives = 84/150 (56%), Gaps = 6/150 (4%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD--GKRIKLQIWDTAGQERFRTIT 69
           G VGKS ++ RF  G FT  +  TIG+DF  + I L    + ++L +WDTAGQE F  IT
Sbjct: 9   GNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAIT 68

Query: 70  TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM-DESKRAVP 128
            AYYRGA   +LV+  TD  SF  I +W   +E    D +  VLV  K D+ D++   + 
Sbjct: 69  KAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGD-IPMVLVQTKIDLLDQA--VIT 125

Query: 129 TSKGQALADEYGIKFFETSAKTNLNVEQVF 158
             + +ALA    +  F TS K + NV ++F
Sbjct: 126 NEEAEALAKRLQLPLFRTSVKDDFNVTELF 155

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  124 bits (312), Expect = 3e-36
 Identities = 65/159 (40%), Positives = 89/159 (55%), Gaps = 7/159 (4%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L+ R+    F T    TIG++F  + +E+DG  + LQIWDTAGQERFR++ T 
Sbjct: 14  GGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTP 73

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNK---VLVGNKADMDESKRAV 127
           +YRG+   LL + V D  SF N+ NW +    +A          V++GNK D+   +R V
Sbjct: 74  FYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI--PERQV 131

Query: 128 PTSKGQALADEYGIK-FFETSAKTNLNVEQVFFSIARDI 165
            T + QA   + G   +FETSAK   NV   F    R +
Sbjct: 132 STEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 170

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  124 bits (313), Expect = 4e-36
 Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 14/159 (8%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+ ++   F T ++ T+  D     + +DGK++ L +WDTAGQE +  +   
Sbjct: 9   GAVGKTCLLISYTTNKFPTEYVPTV-FDNYSANVTVDGKQVNLGLWDTAGQEEYDRLRPL 67

Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM--DESKRA-- 126
            Y      LL + V   SSF N++  W   I+ +   NV  +LVG K D+  D +     
Sbjct: 68  SYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYCP-NVPIILVGTKIDLRDDGNTLKKL 126

Query: 127 ------VPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
                 +   +G+ LA E G +K+ E SA T   +++VF
Sbjct: 127 EKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVF 165

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =  121 bits (307), Expect = 3e-35
 Identities = 50/160 (31%), Positives = 81/160 (50%), Gaps = 15/160 (9%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+ ++  +F   ++ T+  +     +E+DGK ++L +WDTAGQE +  +   
Sbjct: 7   GAVGKTCLLIVYTTNAFPEDYVPTV-FENYSADVEVDGKPVELGLWDTAGQEDYDRLRPL 65

Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
            Y      L+ + V   +SF N++  W   ++     NV  +LVG K D+          
Sbjct: 66  SYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP-NVPIILVGTKLDLRNDKSTLEEL 124

Query: 121 -DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
             + +  V   +GQALA   G +K+ E SA T   V +VF
Sbjct: 125 SKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVF 164

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score =  121 bits (305), Expect = 4e-35
 Identities = 61/156 (39%), Positives = 87/156 (55%), Gaps = 4/156 (2%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L ++     F   +  TI  D   + + +DG+   L I DTAGQE +  +   
Sbjct: 10  GGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQ 68

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTS 130
           Y R   G L V+ +    SF +I  +   I++   SD+V  VLVGNK D+  + R V T 
Sbjct: 69  YMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDL--AARTVSTR 126

Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIK 166
           +GQ LA  YGI + ETSAKT   VE+ F+++ R+I+
Sbjct: 127 QGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREIR 162

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score =  121 bits (305), Expect = 4e-35
 Identities = 61/158 (38%), Positives = 94/158 (59%), Gaps = 8/158 (5%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L ++F  G F   +  TI  D   + IE+D ++  L+I DTAG E+F  +   
Sbjct: 10  GGVGKSALTVQFVQGIFVDKYDPTIE-DSYRKQIEVDCQQCMLEILDTAGTEQFTAMRDL 68

Query: 72  YYRGAMGILLVYDVTDESSFNNI---RNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP 128
           Y +   G  LVY +T + SFN++   R  I  ++   +++V  +LVGNK D+ E +R V 
Sbjct: 69  YIKNGQGFALVYSITAQQSFNDLQDLREQILRVKD--TEDVPMILVGNKCDL-EDERVVS 125

Query: 129 TSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIARDI 165
             +GQ LA ++G   F ETSAK+ +NV+++F+ + R I
Sbjct: 126 KEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQI 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score =  118 bits (298), Expect = 5e-34
 Identities = 65/158 (41%), Positives = 94/158 (59%), Gaps = 8/158 (5%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L ++F    F  S+  TI   ++ + +E+DG++  L+I DTAG E+F  +   
Sbjct: 10  GGVGKSALTVQFVQNVFIESYDPTIEDSYR-KQVEIDGRQCDLEILDTAGTEQFTAMREL 68

Query: 72  YYRGAMGILLVYDVTDESSFNN---IRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP 128
           Y +   G LLVY VT E+S N    +R  +  I+   SDNV  VLVGNKAD+ E  R V 
Sbjct: 69  YIKSGQGFLLVYSVTSEASLNELGELREQVLRIKD--SDNVPMVLVGNKADL-EDDRQVS 125

Query: 129 TSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIARDI 165
              G +L+ ++G + F+ETSA+   NV++VF  + R I
Sbjct: 126 REDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQI 163

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score =  118 bits (296), Expect = 8e-34
 Identities = 60/157 (38%), Positives = 96/157 (61%), Gaps = 7/157 (4%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L ++F  G F   +  TI   ++ + +E+DG++  L+I DTAG E+F  +   
Sbjct: 10  GGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQFTAMRDL 68

Query: 72  YYRGAMGILLVYDVTDESSFNN---IRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP 128
           Y +   G +LVY +T +S+FN+   +R  I  ++   +++V  +LVGNK D+ E +R V 
Sbjct: 69  YMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKD--TEDVPMILVGNKCDL-EDERVVG 125

Query: 129 TSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
             +GQ LA ++G  F ETSAK  +NV ++F+ + R I
Sbjct: 126 KEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score =  117 bits (295), Expect = 1e-33
 Identities = 59/155 (38%), Positives = 93/155 (60%), Gaps = 3/155 (1%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L ++F  G+F   +  TI  DF  + IE+D     L+I DTAG E+F ++   
Sbjct: 10  GGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDL 68

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTS 130
           Y +   G ++VY + ++ +F +I+     I +    + V  +LVGNK D+ ES+R V ++
Sbjct: 69  YIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDL-ESEREVSSA 127

Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
           +G+ALA+E+G  F ETSAK+   V ++F  I R +
Sbjct: 128 EGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  116 bits (293), Expect = 2e-33
 Identities = 63/156 (40%), Positives = 86/156 (55%), Gaps = 3/156 (1%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L ++F    F T +  TI  D   +  E+DG+  +L I DTAGQE F  +   
Sbjct: 11  GGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCEIDGQWARLDILDTAGQEEFSAMREQ 69

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTS 130
           Y R   G LLV+ VTD  SF  +  +   I +    D    +LVGNKAD+ E +R V   
Sbjct: 70  YMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADL-EHQRQVSRE 128

Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIK 166
           +GQ LA +  I + ETSAK  +NV++ F  + R I+
Sbjct: 129 EGQELARQLKIPYIETSAKDRVNVDKAFHDLVRVIR 164

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score =  116 bits (293), Expect = 6e-33
 Identities = 63/198 (31%), Positives = 95/198 (47%), Gaps = 24/198 (12%)

Query: 14  VGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           VGK+ L+ R+    F    +  TIG  F  + + +  + + L IWDTAG ER+  ++  Y
Sbjct: 11  VGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIY 70

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWI---RNIEQHASDNVNKVLVGNKADM---DESKRA 126
           YRGA   ++ YD+TD SSF   + W+   +N+E+H        L G K+D+   D S R 
Sbjct: 71  YRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEH----CKIYLCGTKSDLIEQDRSLRQ 126

Query: 127 VPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQP 186
           V     Q  ADE   + FETS+KT  NV+++F  +A D   R                  
Sbjct: 127 VDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFVSR-----------ANNQMNT 175

Query: 187 DQAGGVGQAAQKS--ACC 202
           ++   +GQ       +CC
Sbjct: 176 EKGVDLGQKKNSYFYSCC 193

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score =  116 bits (291), Expect = 9e-33
 Identities = 65/167 (38%), Positives = 94/167 (56%), Gaps = 4/167 (2%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L ++F    F   +  TI   ++ +   +D +   L I DTAGQE +  +   
Sbjct: 14  GGVGKSALTIQFIQNHFIDEYDPTIEDSYR-KQCVIDEETCLLDILDTAGQEEYSAMRDQ 72

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTS 130
           Y R   G L VY +T  SSF  I ++   I +    D V  +LVGNK D+D S+R V T 
Sbjct: 73  YMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLD-SERQVSTG 131

Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSE 177
           +GQ LA  +GI F ETSAK  +NV++ F+ + R+I++ L + D  S+
Sbjct: 132 EGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRKYLKE-DMPSQ 177

Length = 189

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score =  113 bits (285), Expect = 4e-32
 Identities = 57/151 (37%), Positives = 88/151 (58%), Gaps = 2/151 (1%)

Query: 14  VGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 73
           VGK+CL+ RF    F  ++  TIG+DF++   E+ G    LQ+WDTAGQERF+ I + YY
Sbjct: 11  VGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQERFKCIASTYY 70

Query: 74  RGAMGILLVYDVTDESSFNNIRNWIRN-IEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           RGA  I++V+D+TD +S  + R W+ + ++++   +V   LVG K D+    +     + 
Sbjct: 71  RGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQD 130

Query: 133 QA-LADEYGIKFFETSAKTNLNVEQVFFSIA 162
              LA E   +++  SA T  NV   FF +A
Sbjct: 131 AIKLAREMKAEYWAVSALTGENVRDFFFRVA 161

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  113 bits (283), Expect = 1e-31
 Identities = 56/180 (31%), Positives = 97/180 (53%), Gaps = 5/180 (2%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGK+ L ++     F  ++  TI   ++ + + +DG+   L++ DTAGQE +  +   
Sbjct: 8   GGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVV-VDGQPCMLEVLDTAGQEEYTALRDQ 66

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNW---IRNIEQHASDNVNKVLVGNKADMDESKRAVP 128
           + R   G +LVY +T  S+F  +  +   I+ ++  ++ +V  ++VGNK D     R V 
Sbjct: 67  WIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYE-REVS 125

Query: 129 TSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQ 188
           T +G ALA   G +F E SAKTN+NVE+ F+++ R ++Q+           T K  +  +
Sbjct: 126 TEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQRQGGQGPKGGPTKKKEKKKR 185

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score =  111 bits (279), Expect = 5e-31
 Identities = 57/154 (37%), Positives = 86/154 (55%), Gaps = 5/154 (3%)

Query: 14  VGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 73
           VGKS L ++F +G F  S+  TI   F  + I   G+   L+I DTAGQ+ +  +   Y 
Sbjct: 12  VGKSSLTVQFVEGHFVESYYPTIENTF-SKIITYKGQEYHLEIVDTAGQDEYSILPQKYS 70

Query: 74  RGAMGILLVYDVTDESSFNNIRNWIRN--IEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
            G  G +LVY VT   SF  ++  I +  ++    ++V  VLVGNK+D+   +R V   +
Sbjct: 71  IGIHGYILVYSVTSRKSFEVVKV-IYDKILDMLGKESVPIVLVGNKSDLH-MERQVSAEE 128

Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
           G+ LA+ +G  F E+SAK N NVE+ F  +  +I
Sbjct: 129 GKKLAESWGAAFLESSAKENENVEEAFELLIEEI 162

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score =  109 bits (274), Expect = 2e-30
 Identities = 52/161 (32%), Positives = 73/161 (45%), Gaps = 12/161 (7%)

Query: 11  RGGVGKSCLLLRFSDGSFT---TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-- 65
           RGGVGKS LL     G          TT   D      ELD  ++KL + DT G + F  
Sbjct: 5   RGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVY--VKELDKGKVKLVLVDTPGLDEFGG 62

Query: 66  ---RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 122
                +     RGA  ILLV D TD  S  + +  I  + +   + +  +LVGNK D+ E
Sbjct: 63  LGREELARLLLRGADLILLVVDSTDRESEEDAKLLI--LRRLRKEGIPIILVGNKIDLLE 120

Query: 123 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR 163
            +      + + LA   G+  FE SAKT   V+++F  +  
Sbjct: 121 EREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score =  109 bits (274), Expect = 2e-30
 Identities = 60/169 (35%), Positives = 88/169 (52%), Gaps = 15/169 (8%)

Query: 8   YFERGGVGKSCLLLRFSDGSFTTSFI----TTIGIDFKIRTIELDGKRIKLQIWDTAGQE 63
                GVGKS L +RF     T  FI      +   +  R + +DG+++ L+I DT GQ+
Sbjct: 4   VLGASGVGKSALTVRF----LTKRFIGEYEPNLESLYS-RQVTIDGEQVSLEIQDTPGQQ 58

Query: 64  RFRT--ITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD--NVNKVLVGNKAD 119
           +           R A G +LVY +TD SSF+ +   ++ I +       +  +LVGNKAD
Sbjct: 59  QNEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGNKAD 118

Query: 120 MDESKRAVPTSKGQALADEYGIKFFETSAKTN-LNVEQVFFSIARDIKQ 167
           +  S R V T +GQ LA E G  FFE SA  N L V+ VF  + R++++
Sbjct: 119 LLHS-RQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVFHELCREVRR 166

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score =  108 bits (271), Expect = 5e-30
 Identities = 57/136 (41%), Positives = 83/136 (61%), Gaps = 1/136 (0%)

Query: 27  SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT 86
           +F  ++ +TIGIDF  +T+ LD   ++LQ+WDTAGQERFR++  +Y R +   ++VYD+T
Sbjct: 4   TFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDIT 63

Query: 87  DESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 146
           +  SF N   WI++I      +V   LVGNK D+ +  R V   +G   A EY   F ET
Sbjct: 64  NRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGD-LRKVTYEEGMQKAQEYNTMFHET 122

Query: 147 SAKTNLNVEQVFFSIA 162
           SAK   N++ +F  IA
Sbjct: 123 SAKAGHNIKVLFKKIA 138

Length = 176

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score =  108 bits (271), Expect = 1e-29
 Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 16/161 (9%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITT 70
           GG GK+CLL+ ++ GSF   ++ T+  +  + T+++ +GK I+L +WDTAGQE +  +  
Sbjct: 12  GGCGKTCLLMVYAQGSFPEEYVPTV-FENYVTTLQVPNGKIIELALWDTAGQEDYDRLRP 70

Query: 71  AYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDESKRA--- 126
             Y     IL+ Y V + +S +N+ + W   +  H       VLVG K D+ + K +   
Sbjct: 71  LSYPDVDVILICYSVDNPTSLDNVEDKWYPEV-NHFCPGTPIVLVGLKTDLRKDKNSVSK 129

Query: 127 --------VPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
                   V   +G+++A   G + + E SAK   NV++VF
Sbjct: 130 LRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVF 170

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score =  107 bits (268), Expect = 2e-29
 Identities = 60/155 (38%), Positives = 88/155 (56%), Gaps = 6/155 (3%)

Query: 14  VGKSCLLLRF-SDGS-FTTSFITTIGIDFKIRTIEL--DGKRIKLQIWDTAGQERFRTIT 69
           VGKS L+  F SDG+ F  ++  T G D  ++T+ +      ++L I+D+AGQE F  + 
Sbjct: 11  VGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSAGQELFSDMV 70

Query: 70  TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD-NVNKVLVGNKADMDESKRAVP 128
              +     + +VYDVT+E SFNN   WI  +  H+   +   VLVGNK D+   +R V 
Sbjct: 71  ENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTPGVLVGNKCDL-TDRREVD 129

Query: 129 TSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR 163
            ++ QALA    +KF+ETSAK  +  E  F S+AR
Sbjct: 130 AAQAQALAQANTLKFYETSAKEGVGYEAPFLSLAR 164

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score =  106 bits (267), Expect = 6e-29
 Identities = 59/198 (29%), Positives = 91/198 (45%), Gaps = 11/198 (5%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK-RIKLQIWDTAGQERFRTITT 70
           G  GK+ L+ RF+   F  S+  TIG+DF  R I L G   + LQ+WD  GQ+    +  
Sbjct: 9   GASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQQIGGKMLD 68

Query: 71  AYYRGAMGILLVYDVTDESSFNNIRNW---IRNIEQHASDNVNKVLVGNKADMDESKRAV 127
            Y  GA  + LVYD+T+  SF N+ +W   ++ + + +      VLVGNK D+ E  R V
Sbjct: 69  KYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNKTDL-EHNRQV 127

Query: 128 PTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI------KQRLADTDSRSEPSTI 181
              K    A E  ++    SAKT   V   F  IA ++      +  L  +    +    
Sbjct: 128 TAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAELLGVKLSQAELEQSQRVVKADVS 187

Query: 182 KINQPDQAGGVGQAAQKS 199
           + ++      V ++  K 
Sbjct: 188 RYSERTLREPVSRSVNKR 205

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score =  100 bits (250), Expect = 9e-27
 Identities = 55/158 (34%), Positives = 83/158 (52%), Gaps = 3/158 (1%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS + ++F   SF      TI   +K +   +D +   L I DTAGQ  F  +   
Sbjct: 11  GGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQ-ARIDNEPALLDILDTAGQAEFTAMRDQ 69

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTS 130
           Y R   G ++ Y VTD  SF     +   I +   ++++  VLVGNK D+ E +R V T 
Sbjct: 70  YMRCGEGFIICYSVTDRHSFQEASEFKELITRVRLTEDIPLVLVGNKVDL-EQQRQVTTE 128

Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
           +G+ LA E+   FFETSA     ++  F  + R+I+++
Sbjct: 129 EGRNLAREFNCPFFETSAALRFYIDDAFHGLVREIRRK 166

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 99.7 bits (249), Expect = 1e-26
 Identities = 46/152 (30%), Positives = 80/152 (52%), Gaps = 4/152 (2%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GG GK+  + R   G F   ++ T+G++        +  +I+  +WDTAGQE+F  +   
Sbjct: 9   GGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDG 68

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YY      ++++DVT   ++ N+ NW R++     +N+  VL GNK D+    R V   +
Sbjct: 69  YYIQGQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDI--KDRKVKPKQ 125

Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIAR 163
                 +  ++++E SAK+N N E+ F  +AR
Sbjct: 126 ITFHR-KKNLQYYEISAKSNYNFEKPFLWLAR 156

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score =  100 bits (250), Expect = 1e-26
 Identities = 54/160 (33%), Positives = 84/160 (52%), Gaps = 15/160 (9%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G  GK+CLL+ FS   F   ++ T+  ++ +  IE+DGK+++L +WDTAGQE +  +   
Sbjct: 10  GACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPL 68

Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM--DES----- 123
            Y     IL+ + +    S  NI   W   ++ H   NV  +LVGNK D+  DE      
Sbjct: 69  SYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRNDEHTIREL 127

Query: 124 ----KRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
               +  V   +G+A+A++ G   + E SAKT   V +VF
Sbjct: 128 AKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVF 167

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score =  100 bits (250), Expect = 3e-26
 Identities = 49/152 (32%), Positives = 82/152 (53%), Gaps = 4/152 (2%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGK+  + R   G F   +I T+G++        +   I   +WDTAGQE+F  +   
Sbjct: 18  GGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDG 77

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YY      ++++DVT   ++ N+ NW R+I +   +N+  VLVGNK D+ +  R V   +
Sbjct: 78  YYIKGQCAIIMFDVTSRITYKNVPNWHRDIVR-VCENIPIVLVGNKVDVKD--RQVKARQ 134

Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIAR 163
                 +  +++++ SAK+N N E+ F  +AR
Sbjct: 135 IT-FHRKKNLQYYDISAKSNYNFEKPFLWLAR 165

Length = 215

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 98.2 bits (245), Expect = 4e-26
 Identities = 45/151 (29%), Positives = 60/151 (39%), Gaps = 5/151 (3%)

Query: 11  RGGVGKSCLLLRFSDGS-FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT 69
              VGKS LL R        T +      ++    IE DGK  K  + DTAGQE +  I 
Sbjct: 9   DPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYDAIR 68

Query: 70  TAYYRGAMGILLVYDVT--DESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAV 127
             YYR     L V+D+          +    + I  HA   V  +LVGNK  +D     +
Sbjct: 69  RLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNK--IDLRDAKL 126

Query: 128 PTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
            T      A   G      SA+T  N++  F
Sbjct: 127 KTHVAFLFAKLNGEPIIPLSAETGKNIDSAF 157

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 97.6 bits (243), Expect = 8e-26
 Identities = 57/153 (37%), Positives = 81/153 (52%), Gaps = 5/153 (3%)

Query: 9   FERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI 68
           F  GGVGKS L+LRF  G+F  S+I TI   ++ + I        LQI DT G  +F  +
Sbjct: 7   FGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCSKSICTLQITDTTGSHQFPAM 65

Query: 69  TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK---VLVGNKADMDESKR 125
                      +LVY +T + S   ++     I +   +N+ K   +LVGNK D +   R
Sbjct: 66  QRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCD-ESPSR 124

Query: 126 AVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
            V +S+G ALA  +   F ETSAKTN NV+++F
Sbjct: 125 EVSSSEGAALARTWNCAFMETSAKTNHNVQELF 157

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 95.9 bits (239), Expect = 3e-25
 Identities = 50/160 (31%), Positives = 85/160 (53%), Gaps = 15/160 (9%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+ L++ ++   + T ++ T   +F +  + +DGK ++LQ+ DTAGQ+ F  +   
Sbjct: 9   GAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVV-VLVDGKPVRLQLCDTAGQDEFDKLRPL 67

Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDES------- 123
            Y      LL + V + SSF NI   WI  I +H +     +LVG +AD+          
Sbjct: 68  CYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKH-NPKAPIILVGTQADLRTDVNVLIQL 126

Query: 124 ----KRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
               ++ V  S+ +ALA++ G  ++ E SA T  N+++VF
Sbjct: 127 ARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 89.5 bits (222), Expect = 7e-23
 Identities = 45/145 (31%), Positives = 76/145 (52%), Gaps = 5/145 (3%)

Query: 14  VGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 73
           VGKS L+ RF    +    ++T  +       + +GK I +  WDTAGQERF+T+  +YY
Sbjct: 11  VGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYY 70

Query: 74  RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ 133
             A   +LV+DVT + ++ N+  W   + ++    +  ++V NK D+D S     T K  
Sbjct: 71  HKAHACILVFDVTRKITYKNLSKWYEELREY-RPEIPCIVVANKIDLDPSV----TQKKF 125

Query: 134 ALADEYGIKFFETSAKTNLNVEQVF 158
             A+++ +  +  SA    NV ++F
Sbjct: 126 NFAEKHNLPLYYVSAADGTNVVKLF 150

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 90.8 bits (225), Expect = 8e-23
 Identities = 45/154 (29%), Positives = 82/154 (53%), Gaps = 4/154 (2%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GG GK+  + R   G F   ++ T+G++        +   I+  +WDTAGQE+F  +   
Sbjct: 4   GGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDG 63

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YY      ++++DVT   ++ N+ NW R++ +   +N+  VL GNK D+ + K     +K
Sbjct: 64  YYIQGQCAIIMFDVTARVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKDRK---VKAK 119

Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
                 +  +++++ SAK+N N E+ F  +AR +
Sbjct: 120 SITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 153

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 89.8 bits (223), Expect = 3e-22
 Identities = 47/154 (30%), Positives = 80/154 (51%), Gaps = 4/154 (2%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GG GK+  + R   G F   +  TIG++        +  +I+   WDTAGQE+F  +   
Sbjct: 22  GGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDG 81

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YY      ++++DVT   ++ N+  W R++ +   +N+  VL GNK D+    R V  +K
Sbjct: 82  YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN--RQV-KAK 137

Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
                 +  ++++E SAK+N N E+ F  +AR +
Sbjct: 138 QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171

Length = 219

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 86.4 bits (214), Expect = 2e-21
 Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 15/160 (9%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+ ++  +F   +I T+  D     + +DGK + L +WDTAGQE +  +   
Sbjct: 10  GAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPL 68

Query: 72  YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE-------- 122
            Y      L+ + +   +SF N+R  W   +  H   N   +LVG K D+ +        
Sbjct: 69  SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 127

Query: 123 -SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 158
             K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 128 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 167

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 86.4 bits (214), Expect = 2e-21
 Identities = 54/159 (33%), Positives = 90/159 (56%), Gaps = 13/159 (8%)

Query: 11  RGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITT 70
            G VGK+C+L+ ++  +F T ++ T+  +F    + +DG  + L +WDTAGQE +  +  
Sbjct: 9   DGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQEDYNRLRP 67

Query: 71  AYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDESKR---- 125
             YRGA   LL + +  ++S+ N+ + WI  + +H +  V  VLVG K D+ + K+    
Sbjct: 68  LSYRGADVFLLAFSLISKASYENVLKKWIPEL-RHYAPGVPIVLVGTKLDLRDDKQFFAD 126

Query: 126 ---AVP--TSKGQALADEYGIK-FFETSAKTNLNVEQVF 158
              AVP  T++G+ L  + G   + E S+KT  NV+ VF
Sbjct: 127 HPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 165

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 86.7 bits (215), Expect = 3e-21
 Identities = 54/159 (33%), Positives = 83/159 (52%), Gaps = 6/159 (3%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKS L   F+ G +  S     G D   RT+ +DG+   L ++D   QE    +  + 
Sbjct: 10  GVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQEDGMWLEDSC 69

Query: 73  YRGAMGILLVYDVTDESSF---NNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPT 129
            +     ++VY VTD SSF   + +R  +R   Q   +++  +LVGNK+D+  S R V  
Sbjct: 70  MQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQA--EDIPIILVGNKSDLVRS-REVSV 126

Query: 130 SKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
            +G+A A  +  KF ETSA    NV+++F  I R ++ R
Sbjct: 127 QEGRACAVVFDCKFIETSAALQHNVDELFEGIVRQVRLR 165

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 84.8 bits (210), Expect = 8e-21
 Identities = 43/156 (27%), Positives = 80/156 (51%), Gaps = 6/156 (3%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
            +GK+ L++++ +G F   +I T+G++F  +TI + G  I   IWD  GQ  F  +    
Sbjct: 10  QIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLV 69

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNK----ADMDESKRAVP 128
            + A+ IL ++D+T +S+ N+I+ W R      +     +LVG K    AD+   ++   
Sbjct: 70  CKDAVAILFMFDLTRKSTLNSIKEWYRQARGF-NKTAIPILVGTKYDLFADLPPEEQEEI 128

Query: 129 TSKGQALADEYGIKFFETSAKTNLNVEQVF-FSIAR 163
           T + +  A          S   ++NV+++F F +A+
Sbjct: 129 TKQARKYAKAMKAPLIFCSTSHSINVQKIFKFVLAK 164

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 83.7 bits (207), Expect = 3e-20
 Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 13/158 (8%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G  GK+ LL  F+ G F   +  T+  +  +    +DGK ++L +WDTAGQE +  +   
Sbjct: 10  GACGKTSLLYVFTLGEFPEEYHPTV-FENYVTDCRVDGKPVQLALWDTAGQEEYERLRPL 68

Query: 72  YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE-------- 122
            Y  A  IL+ + +    S  N+R  WI  + ++   NV  +LVG K D+ +        
Sbjct: 69  SYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLRQEAVAKGNY 127

Query: 123 -SKRAVPTSKGQALADEYGIK-FFETSAKTNLNVEQVF 158
            +   VP  + + +A   G K + E SA T   V+ VF
Sbjct: 128 ATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVF 165

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 82.4 bits (203), Expect = 9e-20
 Identities = 51/178 (28%), Positives = 88/178 (49%), Gaps = 15/178 (8%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+ ++  +F   +I T+  ++  +T  +DG+ + L +WDTAGQE +  + T 
Sbjct: 12  GAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTA-VDGRTVSLNLWDTAGQEEYDRLRTL 70

Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDESKRAV--- 127
            Y      ++ + +   SS+ N+R+ W   +  H   NV  +LVG K D+      +   
Sbjct: 71  SYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCP-NVPILLVGTKKDLRNDADTLKKL 129

Query: 128 ------PTS--KGQALADEYG-IKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRS 176
                 P +  +G ALA +   +K+ E SA     V++VF    R +       D++S
Sbjct: 130 KEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLNPTPIKDTKS 187

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 75.9 bits (187), Expect = 5e-18
 Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 4/108 (3%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           G GKS LL +   G F    +   G    + T+E+DG    L IWD  G+E  +     +
Sbjct: 9   GSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREELKFEHIIF 68

Query: 73  YRGAMGILLVYDVTDESSFN---NIRNWIRNIEQHASDNVNKVLVGNK 117
            + A  ILLVYD+TD  S N    +  W+ N+ +     +  +LVGNK
Sbjct: 69  MKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGG-KIPVILVGNK 115

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 74.6 bits (183), Expect = 2e-16
 Identities = 47/177 (26%), Positives = 77/177 (43%), Gaps = 37/177 (20%)

Query: 14  VGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 73
           VGK+ LL R+ +  F  + ++T+G  F ++          + IWDTAG+E+F  + + Y 
Sbjct: 11  VGKTSLLHRYMERRFKDT-VSTVGGAFYLK----QWGPYNISIWDTAGREQFHGLGSMYC 65

Query: 74  RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK--------- 124
           RGA  ++L YDV++  S   + +    +   A+++    +VGNK D+ E           
Sbjct: 66  RGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDA 125

Query: 125 ---------RAVPTSKGQALADEYGIK--------------FFETSAKTNLNVEQVF 158
                    R V     +A                       FETSAKT  NV+++F
Sbjct: 126 GDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELF 182

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 73.4 bits (180), Expect = 2e-16
 Identities = 50/161 (31%), Positives = 75/161 (46%), Gaps = 11/161 (6%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G  GK+ LL  F+ G F   +  T+  ++ I  I +DG  ++L +WDTAGQE F  + + 
Sbjct: 9   GACGKTSLLNVFTRGYFPQVYEPTVFENY-IHDIFVDGLAVELSLWDTAGQEEFDRLRSL 67

Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM-------DES 123
            Y     I+L + V +  S  N+ + W+  I  H    V  VLV  K D+       D  
Sbjct: 68  SYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHC-PGVKLVLVALKCDLREPRNERDRG 126

Query: 124 KRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIAR 163
              +   +G A+A      ++ E SAK N  V + F   AR
Sbjct: 127 THTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEAAR 167

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 71.6 bits (175), Expect = 8e-16
 Identities = 45/160 (28%), Positives = 84/160 (52%), Gaps = 15/160 (9%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+ +++ +F   ++ T+  D    ++ + GK+  L ++DTAGQE +  +   
Sbjct: 9   GAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPL 67

Query: 72  YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADM---------- 120
            Y      L+ + V + +SF N++  W+  ++++A  NV  +L+G + D+          
Sbjct: 68  SYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPYLLIGTQIDLRDDPKTLARL 126

Query: 121 -DESKRAVPTSKGQALADEYGIK-FFETSAKTNLNVEQVF 158
            D  ++ +   +GQ LA E G   + E SA T   ++ VF
Sbjct: 127 NDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVF 166

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 69.5 bits (170), Expect = 5e-15
 Identities = 42/160 (26%), Positives = 77/160 (48%), Gaps = 15/160 (9%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+ ++   F + ++ T+  ++ + T+ + G+   L ++DTAGQE +  +   
Sbjct: 10  GAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPL 68

Query: 72  YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK------ 124
            Y      L+ + V   SSF N++  W+  I  H       +LVG + D+ +        
Sbjct: 69  SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 127

Query: 125 -----RAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
                + +    G+ LA +   +K+ E SA T   ++ VF
Sbjct: 128 AKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVF 167

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 69.5 bits (170), Expect = 6e-15
 Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 6/155 (3%)

Query: 7   IYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 66
           ++    GVGK+ L+ RF   +F      T+  +   +  E+ G ++ + I DT+G   F 
Sbjct: 3   VFMGAAGVGKTALIQRFLYDTFEPKHRRTVE-ELHSKEYEVAGVKVTIDILDTSGSYSFP 61

Query: 67  TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRN--IEQHASDNVNKVLVGNKADMDESK 124
            +     +      LVY V D  SF  ++  +R   +E      V  V+VGNK D   ++
Sbjct: 62  AMRKLSIQNGDAFALVYSVDDPESFEEVKR-LREEILEVKEDKFVPIVVVGNKIDS-LAE 119

Query: 125 RAVPTSKGQALAD-EYGIKFFETSAKTNLNVEQVF 158
           R V  +   +  + ++   F E SAK N NV +VF
Sbjct: 120 RQVEAADALSTVELDWNNGFVEASAKDNENVTEVF 154

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 67.5 bits (165), Expect = 7e-14
 Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 22/164 (13%)

Query: 14  VGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-----TI 68
           VGK+ ++ RF  G F   +  TI  DF  +   + G+  +L I DT+G   F      +I
Sbjct: 11  VGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSI 69

Query: 69  TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK---------VLVGNKAD 119
            T    G +  +LV+ + +  SF  +      I +  S   NK         V+ GNKAD
Sbjct: 70  LT----GDV-FILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKAD 124

Query: 120 MDESKRAVPTSK-GQALADEYGIKFFETSAKTNLNVEQVFFSIA 162
            D   R V   +  Q +  +    +FE SAK N N++++F ++ 
Sbjct: 125 RDFP-REVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALF 167

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 65.3 bits (160), Expect = 1e-13
 Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 8/149 (5%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           G GK+ +L +   G   T+ I TIG  F + T+E   K +K  +WD  GQ++ R +   Y
Sbjct: 9   GAGKTTILYKLKLGEVVTT-IPTIG--FNVETVEY--KNVKFTVWDVGGQDKIRPLWKHY 63

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV-GNKADMDESKRAVPTSK 131
           Y    G++ V D +D       +N +  +          +L+  NK D+  +       +
Sbjct: 64  YENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILANKQDLPGALTESELIE 123

Query: 132 GQALADEYGIKF--FETSAKTNLNVEQVF 158
              L    G ++     SA T   +++  
Sbjct: 124 LLGLESIKGRRWHIQPCSAVTGDGLDEGL 152

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 65.0 bits (159), Expect = 1e-13
 Identities = 35/157 (22%), Positives = 62/157 (39%), Gaps = 11/157 (7%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDF-KIRTIELDGKRIKLQIWDTAGQERFRTITT 70
           GGVGK+ L  +     F     +T GI+    +    + K+I+L +WD  GQE +     
Sbjct: 10  GGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQEIYHATHQ 69

Query: 71  AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS 130
            +       LLV+D+      + +  W+R I+     +   +LVG   D    +      
Sbjct: 70  FFLTSRSLYLLVFDLRTGDEVSRVPYWLRQIKAFGGVSP-VILVGTHIDESCDED--ILK 126

Query: 131 KGQALADEYG---IKFF-ETSAKTNLNVEQVFFSIAR 163
           K     ++     I      S K    + ++  +IA+
Sbjct: 127 K---ALNKKFPAIINDIHFVSCKNGKGIAELKKAIAK 160

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 64.8 bits (158), Expect = 3e-13
 Identities = 43/158 (27%), Positives = 83/158 (52%), Gaps = 16/158 (10%)

Query: 15  GKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 74
           GK+ LL  F+  SF  +++ T+  ++   + E+D +RI+L +WDT+G   +  +    Y 
Sbjct: 13  GKTALLQVFAKDSFPENYVPTVFENYTA-SFEVDKQRIELSLWDTSGSPYYDNVRPLSYP 71

Query: 75  GAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDE---------SK 124
            +  +L+ +D++   + +++ + W   + +    N   +LVG K+D+           +K
Sbjct: 72  DSDAVLICFDISRPETLDSVLKKWKGEVREFCP-NTPVLLVGCKSDLRTDLSTLTELSNK 130

Query: 125 RAVPTS--KGQALADEYG-IKFFETSAKTN-LNVEQVF 158
           R +P S  +G+ LA + G   + E SAKT+  +V  VF
Sbjct: 131 RQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVF 168

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 59.3 bits (144), Expect = 2e-11
 Identities = 50/156 (32%), Positives = 71/156 (45%), Gaps = 17/156 (10%)

Query: 13  GVGKSCLLLRFSDGSFTTSF-----ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT 67
           GVGKS L++      F  +        TI  D    T E    R+   I DT+ + + R 
Sbjct: 12  GVGKSSLIMSLVSEEFPENVPRVLPEITIPADV---TPE----RVPTTIVDTSSRPQDRA 64

Query: 68  ITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM-DESKR 125
              A  R A  I LVY V   S+   IR  W+  I +     V  +LVGNK+D+ D S +
Sbjct: 65  NLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQ 123

Query: 126 AVPTSKGQALADEYG--IKFFETSAKTNLNVEQVFF 159
           A    +   + +E+       E SAKT +NV +VF+
Sbjct: 124 AGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 159

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 57.8 bits (139), Expect = 1e-10
 Identities = 39/161 (24%), Positives = 79/161 (49%), Gaps = 15/161 (9%)

Query: 15  GKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 74
           GK+ LL  F+   F  +++ T+  ++   + E+D +RI+L +WDT+G   +  +    Y 
Sbjct: 17  GKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWDTSGSPYYDNVRPLSYP 75

Query: 75  GAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMD---------ESK 124
            +  +L+ +D++   + +++ + W   I++    N   +LVG K+D+           + 
Sbjct: 76  DSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVSTLVELSNH 134

Query: 125 RAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVFFSIA 162
           R  P S  +G  +A + G   + E SA  + N  +  F +A
Sbjct: 135 RQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 175

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 58.1 bits (140), Expect = 1e-10
 Identities = 42/135 (31%), Positives = 61/135 (45%), Gaps = 30/135 (22%)

Query: 47  LDGKRIKLQIWDTAG----QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNI 101
           +DG  + L++WDT G      RF     AY R  + +LL + +   +S  N++  W   I
Sbjct: 61  VDGVSVSLRLWDTFGDHDKDRRF-----AYGRSDV-VLLCFSIASPNSLRNVKTMWYPEI 114

Query: 102 EQHASDNVNKVLVGNKADM-----DESKRA-------------VPTSKGQALADEYGIKF 143
                  V  +LVG K D+     DE  RA             +P   G+A+A E GI +
Sbjct: 115 RHFCPR-VPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPY 173

Query: 144 FETSAKTNLNVEQVF 158
           +ETS  T   V+ VF
Sbjct: 174 YETSVVTQFGVKDVF 188

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 57.7 bits (139), Expect = 2e-10
 Identities = 42/178 (23%), Positives = 82/178 (46%), Gaps = 18/178 (10%)

Query: 15  GKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 74
           GK+ LL  F+  ++  S++ T+  ++   + E+D  RI+L +WDT+G   +  +    Y 
Sbjct: 13  GKTALLHVFAKDNYPESYVPTVFENYTA-SFEIDKHRIELNMWDTSGSSYYDNVRPLAYP 71

Query: 75  GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD---------ESKR 125
            +  +L+ +D++   + +++    +   Q    N   VLVG K DM            +R
Sbjct: 72  DSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKLVLVGCKLDMRTDLSTLRELSKQR 131

Query: 126 AVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVFFSIA-----RDIKQRLADTDSR 175
            +P +  +G  LA + G + + E S++ + N  +  F +      R     L  + SR
Sbjct: 132 LIPVTHEQGSLLARQLGAVAYVECSSRMSENSVRDVFHVTTLASVRREHPSLKRSTSR 189

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 55.3 bits (133), Expect = 8e-10
 Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 6/115 (5%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
             GK+ +L +   G   T+ I TIG  F + T+    K I   +WD  GQ++ R +   Y
Sbjct: 23  AAGKTTILYKLKLGESVTT-IPTIG--FNVETVTY--KNISFTVWDVGGQDKIRPLWRHY 77

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDNVNKVLVGNKADMDESKRA 126
           Y    G++ V D  D    +  R  + R + +    +   ++  NK D+ ++ +A
Sbjct: 78  YTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKA 132

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 54.0 bits (130), Expect = 2e-09
 Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 5/107 (4%)

Query: 15  GKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 74
           GKS LL +       T+ I T+G  F +  ++L+   + L +WD  GQE+ RT+   Y  
Sbjct: 11  GKSTLLYKLKHAELVTT-IPTVG--FNVEMLQLEKH-LSLTVWDVGGQEKMRTVWKCYLE 66

Query: 75  GAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADM 120
              G++ V D +DE+  +  +  +++I ++     V  VL+ NK D+
Sbjct: 67  NTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDL 113

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 53.1 bits (128), Expect = 4e-09
 Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 5/107 (4%)

Query: 15  GKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 74
           GK+ L+   + G F+   I T+G  F +R +      IK  +WD  GQ RFR++   Y R
Sbjct: 11  GKTTLVNVIASGQFSEDTIPTVG--FNMRKVTKGNVTIK--VWDLGGQPRFRSMWERYCR 66

Query: 75  GAMGILLVYDVTDESSFNNIRNWIRN-IEQHASDNVNKVLVGNKADM 120
           G   I+ V D  D       +N + + +E+ + + +  +++GNK D+
Sbjct: 67  GVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGNKNDL 113

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 52.7 bits (127), Expect = 6e-09
 Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 8/125 (6%)

Query: 15  GKSCLLLRFSDGS-FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 73
           GK+ +L +F  G    TS   TIG + +    E+  K I+  +WD  GQE  R+    YY
Sbjct: 27  GKTTILYQFLLGEVVHTS--PTIGSNVE----EIVYKNIRFLMWDIGGQESLRSSWNTYY 80

Query: 74  RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV-GNKADMDESKRAVPTSKG 132
                ++LV D TD       +  +  +  H       +LV  NK D+  +      S+ 
Sbjct: 81  TNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISES 140

Query: 133 QALAD 137
             L  
Sbjct: 141 LGLTS 145

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 48.4 bits (116), Expect = 2e-07
 Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 6/113 (5%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
             GK+ +L +   G   T+ I TIG  F + T+    K +K  +WD  GQE  R +   Y
Sbjct: 24  NAGKTTILYKLKLGEIVTT-IPTIG--FNVETVTY--KNVKFTVWDVGGQESLRPLWRNY 78

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESK 124
           +     ++ V D  D       +  +  +       +   +++ NK D+  + 
Sbjct: 79  FPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLPGAM 131

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 48.9 bits (116), Expect = 3e-07
 Identities = 41/200 (20%), Positives = 91/200 (45%), Gaps = 34/200 (17%)

Query: 15  GKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 74
           GK+ +L   +   +  +++ T+  ++    +E + +R++L +WDT+G   +  +    Y 
Sbjct: 25  GKTAMLQVLAKDCYPETYVPTVFENYTA-CLETEEQRVELSLWDTSGSPYYDNVRPLCYS 83

Query: 75  GAMGILLVYDVTDESSFNN-IRNWIRNIEQHASDNVNKVLVGNKADM-----------DE 122
            +  +LL +D++    F++ ++ W   I  +   +   +L+G K D+           ++
Sbjct: 84  DSDAVLLCFDISRPEIFDSALKKWRAEILDYCP-STRILLIGCKTDLRTDLSTLMELSNQ 142

Query: 123 SKRAVPTSKGQALADEYGIK-FFETSAKTN-LNVEQVFFSIA----------------RD 164
            +  +   +G A+A + G + + E SA T+  ++  +F + +                R 
Sbjct: 143 KQAPISYEQGCAMAKQLGAEAYLECSAFTSEKSIHSIFRTASLLCINKLSPLAKKSPVRS 202

Query: 165 IKQRLADTDSRSE--PSTIK 182
           + +RL    SRSE   ST K
Sbjct: 203 LSKRLLHLPSRSELISSTFK 222

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 5/88 (5%)

Query: 34  TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNN 93
            T+G++  I TIE+     +L  WD  GQE  R++   YY  + G++ V D TD   FN 
Sbjct: 37  PTVGLN--IGTIEVGK--ARLMFWDLGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNE 92

Query: 94  IRNWIRNIEQHAS-DNVNKVLVGNKADM 120
            ++    +  + + + V  +++ NK D+
Sbjct: 93  SKSAFEKVINNEALEGVPLLVLANKQDL 120

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 48.3 bits (115), Expect = 3e-07
 Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 6/107 (5%)

Query: 15  GKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 74
           GK+ +L +   G   T+ I TIG  F + T+E   K +K  +WD  GQ++ R +   YY+
Sbjct: 29  GKTTILYKLKLGEVVTT-IPTIG--FNVETVEY--KNLKFTMWDVGGQDKLRPLWRHYYQ 83

Query: 75  GAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDNVNKVLVGNKADM 120
              G++ V D  D     + R  + R + +    +   ++  NK D+
Sbjct: 84  NTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDL 130

Length = 182

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 47.0 bits (112), Expect = 5e-07
 Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 8/108 (7%)

Query: 15  GKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 74
           GK+ +L +   G   T+ I TIG  F + T+E   K I   +WD  GQ++ R +   Y++
Sbjct: 12  GKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQ 66

Query: 75  GAMGILLVYDVTDESSFNNIRNWIRNI--EQHASDNVNKVLVGNKADM 120
              G++ V D  D       R  ++ +  E    D V  V   NK D+
Sbjct: 67  NTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVF-ANKQDL 113

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 46.7 bits (111), Expect = 9e-07
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 3/111 (2%)

Query: 15  GKSCLLLRFSDGSFTTSFITTIGIDF-KIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 73
           GK+ +L R     F  + + T G +  KI+    + K +    WD  GQE+ R +  +Y 
Sbjct: 15  GKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNAKGVTFHFWDVGGQEKLRPLWKSYT 73

Query: 74  RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV-GNKADMDES 123
           R   GI+ V D  D       +  +  I + + +    VLV  NK D+  +
Sbjct: 74  RCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLVLANKQDLPNA 124

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 8/108 (7%)

Query: 15  GKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 74
           GK+ +L +   G   T+ I T+G  F + T+    K +K  +WD  GQ++ R +   YY 
Sbjct: 21  GKTTILYKLKLGQSVTT-IPTVG--FNVETVTY--KNVKFNVWDVGGQDKIRPLWRHYYT 75

Query: 75  GAMGILLVYDVTDESSFNNIRNWIRNI--EQHASDNVNKVLVGNKADM 120
           G  G++ V D  D    +  R  +  I  ++   D +  V   NK D+
Sbjct: 76  GTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVF-ANKQDL 122

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 45/163 (27%), Positives = 67/163 (41%), Gaps = 23/163 (14%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD---------TAGQE 63
           GVGK+ ++ +F    F   +I T         + L G+   L I D         TAGQE
Sbjct: 10  GVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQE 69

Query: 64  ----RFRTITTAYYRGAMGILLVYDVTDESSFNN---IRNWIRNIEQHASDNVNKVLVGN 116
               RFR +     R +   +LVYD+    SF+    +R  I       +     V+VGN
Sbjct: 70  WMDPRFRGL-----RNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGN 124

Query: 117 KADMDESKRAVPTSKGQALADE-YGIKFFETSAKTNLNVEQVF 158
           K D  +  R  P      L  + +   + E SAK N ++  +F
Sbjct: 125 KRDQ-QRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLF 166

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 44.8 bits (106), Expect = 4e-06
 Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 14/156 (8%)

Query: 15  GKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE--RFRTITTAY 72
           GKS L+ R+  GS+     +  G  FK + + +DG+   L I D  G    +F     A 
Sbjct: 12  GKSALVHRYLTGSYV-QLESPEGGRFK-KEVLVDGQSHLLLIRDEGGAPDAQFAGWVDA- 68

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESK-RAVPTS 130
                 ++ V+ + DE+SF  +      +  +     +  +LVG +  +  S  R +  +
Sbjct: 69  ------VIFVFSLEDEASFQTVYRLYHQLSSYRNISEIPLILVGTQDAISASNPRVIDDA 122

Query: 131 KGQAL-ADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
           + + L AD     ++ET A   LNVE+VF   A+ I
Sbjct: 123 RARQLCADMKRCSYYETCATYGLNVERVFQEAAQKI 158

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 45.0 bits (106), Expect = 5e-06
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 5/82 (6%)

Query: 15  GKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 74
           GK+ +L +   G   T+ I TIG  F + T+E   K I   +WD  GQ++ R +   Y++
Sbjct: 29  GKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQ 83

Query: 75  GAMGILLVYDVTDESSFNNIRN 96
              G++ V D  D       R+
Sbjct: 84  NTQGLIFVVDSNDRDRVVEARD 105

Length = 181

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 43.9 bits (104), Expect = 8e-06
 Identities = 42/152 (27%), Positives = 64/152 (42%), Gaps = 18/152 (11%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           G GK+ +L R   G   T+ I TIG  F + T+    K +K Q+WD  GQ   R     Y
Sbjct: 9   GAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTY--KNLKFQVWDLGGQTSIRPYWRCY 63

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA---SDNVNKVLV---GNKADMDESKRA 126
           Y     I+ V D TD       R  I   E HA    + +   ++    NK DM  +   
Sbjct: 64  YSNTDAIIYVVDSTDRD-----RLGISKSELHAMLEEEELKDAVLLVFANKQDMPGALSE 118

Query: 127 VPTSKGQALADEYGIKF--FETSAKTNLNVEQ 156
              ++   L++     +  F+TSA     +++
Sbjct: 119 AEVAEKLGLSELKDRTWQIFKTSATKGEGLDE 150

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 34/156 (21%), Positives = 62/156 (39%), Gaps = 29/156 (18%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-----DGKRIKLQIWDTAGQ----E 63
           GVGKS L+          +   T+G    +R         + K   +++WD  G     E
Sbjct: 10  GVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTPEEKTFYVELWDVGGSVGSAE 69

Query: 64  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-------------------EQH 104
             ++    +Y    GI+ V+D+T++ S  N+  W                       EQ 
Sbjct: 70  SVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLEALNRDTFPAGLLVTNGDYDSEQF 129

Query: 105 ASDNVNKVLVGNKADM-DESKRAVPTSKGQALADEY 139
           A + V  +++G K D   E+KR    ++   L++++
Sbjct: 130 AGNPVPLLVIGTKLDQIPEAKRNWVLTRTAFLSEDF 165

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 42.7 bits (100), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 5/72 (6%)

Query: 13 GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
          G GK+ +L +     F    I TIG  F + T+E   K +K  IWD  G+ + R +   Y
Sbjct: 9  GAGKTTILFKLKQDEFMQP-IPTIG--FNVETVEY--KNLKFTIWDVGGKHKLRPLWKHY 63

Query: 73 YRGAMGILLVYD 84
          Y     ++ V D
Sbjct: 64 YLNTQAVVFVID 75

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 11/136 (8%)

Query: 24  SDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 83
           S  S      TT+ +DF   +IELD     + ++ T GQERF+ +     RGA+G +++ 
Sbjct: 43  SSVSGKGKRPTTVAMDFG--SIELDEDT-GVHLFGTPGQERFKFMWEILSRGAVGAIVLV 99

Query: 84  DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK-GQALADEY-GI 141
           D +   +F+     I +      + +  V+  NK D+ +   A+P  K  +AL  E   +
Sbjct: 100 DSSRPITFHAEE--IIDFLTS-RNPIPVVVAINKQDLFD---ALPPEKIREALKLELLSV 153

Query: 142 KFFETSAKTNLNVEQV 157
              E  A         
Sbjct: 154 PVIEIDATEGEGARDQ 169

Length = 187

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 12/133 (9%)

Query: 15  GKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 74
           GK+ LL    D       + T+       + EL    +K   +D  G E+ R +   Y+ 
Sbjct: 31  GKTTLLHMLKDDR-LAQHVPTLHPT----SEELTIGNVKFTTFDLGGHEQARRVWKDYFP 85

Query: 75  GAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKVLVGNKADMDESKRAVPTSKGQ 133
              GI+ + D  D   F   +  + ++       NV  +++GNK D      AV   +  
Sbjct: 86  EVDGIVFLVDAADPERFQESKEELDSLLNDEELANVPILILGNKIDK---PGAVSEEE-- 140

Query: 134 ALADEYGIKFFET 146
            L +  G+    T
Sbjct: 141 -LREALGLYGTTT 152

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|206679 cd01892, Miro2, Mitochondrial Rho family 2 (Miro2), C-terminal

 Score = 42.2 bits (100), Expect = 4e-05
 Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 5/114 (4%)

Query: 13  GVGKSCLLLRFSDGSFTTSFIT-TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G GKS LL  F   SF+ +  + TI   + + T+E+ G+  K  I    G++    +   
Sbjct: 14  GSGKSALLQAFLGRSFSQNAYSPTIKPRYAVNTVEVPGQE-KYLILREVGEDEEAILLND 72

Query: 72  YYRGAMGIL-LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK 124
               A  +  LVYD +D +SF+     +        + +  + V  KAD+DE +
Sbjct: 73  AELAACDVACLVYDSSDPNSFSYCAE-VYKKYFMLGE-IPCLFVAAKADLDEQQ 124

Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 180

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 42.5 bits (100), Expect = 5e-05
 Identities = 30/133 (22%), Positives = 60/133 (45%), Gaps = 25/133 (18%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIR------------TIELDGKR-IKLQIWDT 59
           GVGKS L+     GS       TIG    ++            +I+ D +R   +++WD 
Sbjct: 31  GVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDV 90

Query: 60  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN----------- 108
           +G ER++   + +Y    G++ V+D++   +  +++ W   +    + +           
Sbjct: 91  SGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGL 150

Query: 109 -VNKVLVGNKADM 120
            V  +++GNKAD+
Sbjct: 151 PVPYIVIGNKADI 163

Length = 334

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 5/87 (5%)

Query: 15  GKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 74
           GK+ +L +F +G   ++   T+G  F I+T+E +G   KL IWD  GQ+  R+    Y+ 
Sbjct: 26  GKTTILKKF-NGEDISTISPTLG--FNIKTLEYNG--YKLNIWDVGGQKSLRSYWRNYFE 80

Query: 75  GAMGILLVYDVTDESSFNNIRNWIRNI 101
               ++ V D +D +   + +  ++ +
Sbjct: 81  STDALIWVVDSSDRARLEDCKRELQKL 107

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|206684 cd01897, NOG, Nucleolar GTP-binding protein (NOG)

 Score = 39.1 bits (92), Expect = 5e-04
 Identities = 35/171 (20%), Positives = 61/171 (35%), Gaps = 50/171 (29%)

Query: 14  VGKSCLLLRFSDGS-------FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----- 61
           VGKS L+ + +          FTT  +  +G        +    R   Q+ DT G     
Sbjct: 11  VGKSSLVNKLTRAKPEVAPYPFTTKSLF-VGH------FDYKYLRW--QVIDTPGILDRP 61

Query: 62  -QER----FRTITT-AYYRGAMGILLVYDVTDESS---------FNNIRNWIRNIEQHAS 106
            +ER     + IT  A+ R A  +L   D ++            F  I+           
Sbjct: 62  LEERNTIEMQAITALAHLRAA--VLFFIDPSETCGYSIEEQLSLFKEIKPLF-------- 111

Query: 107 DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV 157
            N   ++V NK D+         S+ +   ++ G +  + S  T   V+++
Sbjct: 112 -NKPVIVVLNKIDL---LTEEDLSEIEKELEKEGEEVIKISTLTEEGVDEL 158

NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. Length = 167

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 15  GKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 74
           GK+ +L + +    +    T     F I+ ++ DG   KL +WD  GQ + R     Y+ 
Sbjct: 27  GKTTILKQLASEDISHITPTQ---GFNIKNVQADG--FKLNVWDIGGQRKIRPYWRNYFE 81

Query: 75  GAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKVLVGNKADMDESKRAVPTSKGQ 133
               ++ V D  D   F      +  + E+     V  ++  NK D+  +  A   ++  
Sbjct: 82  NTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVLVFANKQDLLTAAPAEEVAEAL 141

Query: 134 ALAD 137
            L D
Sbjct: 142 NLHD 145

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 24/118 (20%), Positives = 53/118 (44%), Gaps = 10/118 (8%)

Query: 15  GKSCLLLRFSDGSFTTSFIT-TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 73
           GK+ ++ +    +  +  I  T+G  F + + +     +    +D +GQ ++R +   YY
Sbjct: 11  GKTTIINQLKPSNAQSQNIVPTVG--FNVESFKKGN--LSFTAFDMSGQGKYRGLWEHYY 66

Query: 74  RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK----VLVGNKADMDESKRAV 127
           +   GI+ V D +D       ++ +  +  H  D  ++    +   NK D+ ++  AV
Sbjct: 67  KNIQGIIFVIDSSDRLRMVVAKDELELLLNHP-DIKHRRIPILFYANKMDLPDALTAV 123

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	205
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
PLN03108	210	Rab family protein; Provisional	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
PLN03118	211	Rab family protein; Provisional	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	100.0
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	100.0
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	100.0
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	100.0
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	100.0
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	100.0
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	100.0
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	100.0
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	100.0
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	100.0
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	100.0
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	100.0
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	100.0
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	100.0
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	100.0
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	100.0
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	100.0
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	100.0
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.98
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.98
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.98
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.98
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.98
PLN00223	181	ADP-ribosylation factor; Provisional	99.98
KOG0395	196	consensus Ras-related GTPase [General function pre	99.97
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.97
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.97
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.97
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.97
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.97
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.97
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.97
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.97
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.97
PTZ00133	182	ADP-ribosylation factor; Provisional	99.97
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.97
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.97
PTZ00099	176	rab6; Provisional	99.97
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.97
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.96
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.96
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.96
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.96
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.96
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.96
PLN00023	334	GTP-binding protein; Provisional	99.96
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.96
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.96
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.95
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.95
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.95
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.95
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.94
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.94
COG1100	219	GTPase SAR1 and related small G proteins [General	99.94
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.94
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.94
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.94
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.94
PRK12299	335	obgE GTPase CgtA; Reviewed	99.93
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.93
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.93
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.93
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.93
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.92
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.92
PRK04213	201	GTP-binding protein; Provisional	99.92
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.92
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.92
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.91
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.91
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.91
PRK03003	472	GTP-binding protein Der; Reviewed	99.91
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.91
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.9
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.9
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.9
KOG1673	205	consensus Ras GTPases [General function prediction	99.9
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.9
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.9
PRK03003	472	GTP-binding protein Der; Reviewed	99.9
cd00881	189	GTP_translation_factor GTP translation factor fami	99.9
PRK12297	424	obgE GTPase CgtA; Reviewed	99.9
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.89
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.89
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.89
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.89
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.89
PRK12296	500	obgE GTPase CgtA; Reviewed	99.89
PRK11058	426	GTPase HflX; Provisional	99.89
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.89
PRK15494	339	era GTPase Era; Provisional	99.89
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.88
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.88
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.88
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.88
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.88
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.88
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.87
PRK05306	787	infB translation initiation factor IF-2; Validated	99.87
CHL00189	742	infB translation initiation factor 2; Provisional	99.87
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.87
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.87
PRK00093	435	GTP-binding protein Der; Reviewed	99.87
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.87
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.86
PRK12298	390	obgE GTPase CgtA; Reviewed	99.86
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.86
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.86
COG2229	187	Predicted GTPase [General function prediction only	99.85
PRK05433	600	GTP-binding protein LepA; Provisional	99.85
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.84
PRK00089	292	era GTPase Era; Reviewed	99.84
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.84
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.84
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.84
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.84
COG1160	444	Predicted GTPases [General function prediction onl	99.84
PRK00093	435	GTP-binding protein Der; Reviewed	99.84
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.84
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.84
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.84
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.84
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.83
PRK10218	607	GTP-binding protein; Provisional	99.82
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.82
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.82
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.81
PRK12317	425	elongation factor 1-alpha; Reviewed	99.81
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.81
COG0486	454	ThdF Predicted GTPase [General function prediction	99.8
COG1159	298	Era GTPase [General function prediction only]	99.8
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.79
PRK04004	586	translation initiation factor IF-2; Validated	99.79
COG1160	444	Predicted GTPases [General function prediction onl	99.79
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.79
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.79
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.79
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.78
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.78
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.77
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.76
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.76
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.74
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.73
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.72
PRK12735	396	elongation factor Tu; Reviewed	99.72
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.72
PRK12736	394	elongation factor Tu; Reviewed	99.72
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.72
COG2262	411	HflX GTPases [General function prediction only]	99.72
COG0218	200	Predicted GTPase [General function prediction only	99.72
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.71
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.71
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.71
COG1084	346	Predicted GTPase [General function prediction only	99.7
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.7
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.7
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.7
PLN00043	447	elongation factor 1-alpha; Provisional	99.68
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.68
CHL00071	409	tufA elongation factor Tu	99.68
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.67
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.67
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.67
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.67
PRK13351	687	elongation factor G; Reviewed	99.67
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.66
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.66
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.66
COG0536	369	Obg Predicted GTPase [General function prediction	99.66
PLN03126	478	Elongation factor Tu; Provisional	99.65
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.65
KOG1145	683	consensus Mitochondrial translation initiation fac	99.64
PTZ00141	446	elongation factor 1- alpha; Provisional	99.64
PRK00049	396	elongation factor Tu; Reviewed	99.63
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.63
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.62
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.61
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.61
PLN03127	447	Elongation factor Tu; Provisional	99.6
COG1163	365	DRG Predicted GTPase [General function prediction	99.6
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.59
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.59
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.59
PRK12739	691	elongation factor G; Reviewed	99.57
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.56
PRK09602	396	translation-associated GTPase; Reviewed	99.55
PRK12740	668	elongation factor G; Reviewed	99.53
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.53
KOG0090	238	consensus Signal recognition particle receptor, be	99.53
PRK00007	693	elongation factor G; Reviewed	99.52
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.52
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.51
PRK14845	1049	translation initiation factor IF-2; Provisional	99.51
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.49
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.49
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.49
COG3596	296	Predicted GTPase [General function prediction only	99.49
PRK09866	741	hypothetical protein; Provisional	99.48
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.45
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.45
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.44
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.43
PRK13768	253	GTPase; Provisional	99.43
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.42
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.4
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.4
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.39
PTZ00258	390	GTP-binding protein; Provisional	99.37
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.37
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.36
PRK07560	731	elongation factor EF-2; Reviewed	99.35
PRK09601	364	GTP-binding protein YchF; Reviewed	99.35
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.35
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.34
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.33
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.32
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.3
PTZ00416	836	elongation factor 2; Provisional	99.3
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.29
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.28
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.28
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.27
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.27
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.22
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.21
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.2
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.18
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.18
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.17
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.17
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.15
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.14
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.14
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.12
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.11
KOG0410	410	consensus Predicted GTP binding protein [General f	99.1
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.1
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.09
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.08
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.04
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.04
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.02
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.0
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.96
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	98.96
PRK12288	347	GTPase RsgA; Reviewed	98.95
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.95
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	98.94
PRK12289	352	GTPase RsgA; Reviewed	98.93
KOG3887	347	consensus Predicted small GTPase involved in nucle	98.93
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.9
PRK00098	298	GTPase RsgA; Reviewed	98.88
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	98.87
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.87
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	98.86
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.86
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	98.84
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.79
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	98.77
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.67
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.64
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.61
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.6
KOG2486	320	consensus Predicted GTPase [General function predi	98.59
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.59
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.58
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.58
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.57
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.57
KOG1143	591	consensus Predicted translation elongation factor	98.54
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.53
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.51
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.49
COG1161	322	Predicted GTPases [General function prediction onl	98.48
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.48
KOG0460	449	consensus Mitochondrial translation elongation fac	98.48
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.47
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.46
PRK13796	365	GTPase YqeH; Provisional	98.45
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.43
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.42
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.39
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.39
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	98.39
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.36
KOG4273	418	consensus Uncharacterized conserved protein [Funct	98.36
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.35
cd03112	158	CobW_like The function of this protein family is u	98.33
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.33
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.33
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.32
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.31
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.28
PRK01889	356	GTPase RsgA; Reviewed	98.28
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.28
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.26
PRK10416	318	signal recognition particle-docking protein FtsY;	98.24
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.23
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.21
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.18
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.18
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	98.16
COG1162	301	Predicted GTPases [General function prediction onl	98.13
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.1
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.09
PRK13796	365	GTPase YqeH; Provisional	98.08
PRK12288	347	GTPase RsgA; Reviewed	98.06
PRK14974	336	cell division protein FtsY; Provisional	98.03
PRK13695	174	putative NTPase; Provisional	98.02
PRK11537	318	putative GTP-binding protein YjiA; Provisional	98.01
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.0
PRK12289	352	GTPase RsgA; Reviewed	98.0
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	97.99
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.99
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	97.88
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.85
COG0523	323	Putative GTPases (G3E family) [General function pr	97.85
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	97.84
COG1162	301	Predicted GTPases [General function prediction onl	97.84
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	97.84
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	97.82
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.82
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	97.8
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.77
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	97.75
PRK00098	298	GTPase RsgA; Reviewed	97.73
KOG1534	273	consensus Putative transcription factor FET5 [Tran	97.73
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.71
cd03114	148	ArgK-like The function of this protein family is u	97.71
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.67
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.64
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.63
COG3523	1188	IcmF Type VI protein secretion system component Va	97.63
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	97.61
cd03111	106	CpaE_like This protein family consists of proteins	97.57
KOG2484	435	consensus GTPase [General function prediction only	97.55
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.52
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.51
TIGR00959	428	ffh signal recognition particle protein. This mode	97.48
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.46
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.44
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.42
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.42
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.42
PRK08118	167	topology modulation protein; Reviewed	97.41
PRK14530	215	adenylate kinase; Provisional	97.41
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.4
PRK10867	433	signal recognition particle protein; Provisional	97.39
PRK07261	171	topology modulation protein; Provisional	97.38
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	97.32
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.3
PRK08233	182	hypothetical protein; Provisional	97.28
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.25
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.23
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.23
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.23
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.21
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.19
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.18
COG1161	322	Predicted GTPases [General function prediction onl	97.17
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.15
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.15
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.14
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.14
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.13
PRK03839	180	putative kinase; Provisional	97.13
PTZ00088	229	adenylate kinase 1; Provisional	97.12
KOG1533	290	consensus Predicted GTPase [General function predi	97.12
PRK06217	183	hypothetical protein; Validated	97.1
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.09
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.08
PF00004	132	AAA: ATPase family associated with various cellula	97.08
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.07
PRK14531	183	adenylate kinase; Provisional	97.05
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	97.05
cd03110	179	Fer4_NifH_child This protein family's function is	97.03
smart00382	148	AAA ATPases associated with a variety of cellular	97.02
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	96.98
PF00005	137	ABC_tran: ABC transporter This structure is on hol	96.98
cd02036	179	MinD Bacterial cell division requires the formatio	96.97
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	96.97
KOG2423	572	consensus Nucleolar GTPase [General function predi	96.95
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	96.93
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.92
PRK14532	188	adenylate kinase; Provisional	96.92
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	96.91
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	96.9
PHA00729	226	NTP-binding motif containing protein	96.9
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	96.89
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	96.89
PRK05480	209	uridine/cytidine kinase; Provisional	96.88
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	96.88
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	96.88
PRK13949	169	shikimate kinase; Provisional	96.87
PTZ00301	210	uridine kinase; Provisional	96.87
PRK00625	173	shikimate kinase; Provisional	96.86
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.85
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	96.85
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	96.84
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	96.84
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	96.83
KOG3929	363	consensus Uncharacterized conserved protein [Funct	96.81
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.8
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	96.8
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	96.79
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	96.79
PRK02496	184	adk adenylate kinase; Provisional	96.79
PRK13833	323	conjugal transfer protein TrbB; Provisional	96.78
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	96.77
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	96.76
TIGR00235	207	udk uridine kinase. Model contains a number of lon	96.76
PRK10646	153	ADP-binding protein; Provisional	96.74
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	96.74
COG3845	501	ABC-type uncharacterized transport systems, ATPase	96.74
PRK06547	172	hypothetical protein; Provisional	96.73
PRK05057	172	aroK shikimate kinase I; Reviewed	96.73
PRK04040	188	adenylate kinase; Provisional	96.73
PRK13851	344	type IV secretion system protein VirB11; Provision	96.73
COG4525	259	TauB ABC-type taurine transport system, ATPase com	96.73
PRK04195	482	replication factor C large subunit; Provisional	96.73
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	96.71
COG0802	149	Predicted ATPase or kinase [General function predi	96.71
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	96.7

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.5e-44  Score=257.63  Aligned_cols=174  Identities=59%  Similarity=0.975  Sum_probs=165.9

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+|+|++|+|||+|+.||..+.|.+.+..|+|.|+..+.+.++++.+++++|||+|+++|+++..+++++|+++|+
T Consensus         8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~   87 (205)
T KOG0084|consen    8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIF   87 (205)
T ss_pred             eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEE
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCc-EEEEcCCCCCCHHHHHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIK-FFETSAKTNLNVEQVFFS  160 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~~~~~  160 (205)
                      |||+++.+||..+.+|+.++.++..+++|.++||||+|+.+ .+.+..+++++|+.+++++ ++|+||+++.+++++|..
T Consensus        88 vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~-~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~  166 (205)
T KOG0084|consen   88 VYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTE-KRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLT  166 (205)
T ss_pred             EEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHh-heecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHH
Confidence            99999999999999999999999999999999999999976 6889999999999999998 999999999999999999


Q ss_pred             HHHHHHHHhcccCCCC
Q 028686          161 IARDIKQRLADTDSRS  176 (205)
Q Consensus       161 i~~~~~~~~~~~~~~~  176 (205)
                      +...+..+.......+
T Consensus       167 la~~lk~~~~~~~~~~  182 (205)
T KOG0084|consen  167 LAKELKQRKGLHVKWS  182 (205)
T ss_pred             HHHHHHHhcccCCCCC
Confidence            9999988877655554

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.9e-43  Score=249.67  Aligned_cols=198  Identities=34%  Similarity=0.585  Sum_probs=170.5

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ...||+++|+.++||||||++|+...++..|.+|+|.||..+.+.+.++.+.+++|||+|+++|+++.+.|+++++++|+
T Consensus        21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi  100 (221)
T KOG0094|consen   21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI  100 (221)
T ss_pred             eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcCC-CCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHASD-NVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  160 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~-~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  160 (205)
                      |||+++..||+++..|++.+...+.. ++-|++||||.||.+ .+++..++....++++++.|+++||+.|+||..+|..
T Consensus       101 VyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~d-krqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrr  179 (221)
T KOG0094|consen  101 VYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSD-KRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRR  179 (221)
T ss_pred             EEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccc-hhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHH
Confidence            99999999999999999999998875 477889999999987 6889999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccc--CCCCCCccccccCCCCCCCCCCCCCCCCCcC
Q 028686          161 IARDIKQRLADT--DSRSEPSTIKINQPDQAGGVGQAAQKSACCG  203 (205)
Q Consensus       161 i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~  203 (205)
                      |..++.+....+  ..++....+++......+   +..+-.+|||
T Consensus       180 Iaa~l~~~~~~~~~~~~~~~~~i~~k~~~~~~---~~s~~~~~~C  221 (221)
T KOG0094|consen  180 IAAALPGMEVLEILSKQESMVDINLKGSPNEQ---QASKPGLCSC  221 (221)
T ss_pred             HHHhccCccccccccccccceeEEccCCCCcc---cccCCCCCCC
Confidence            888877665433  222334445554221111   1112566888

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4e-43  Score=249.46  Aligned_cols=195  Identities=39%  Similarity=0.690  Sum_probs=173.8

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+++|+.++|||||+.|+..+.|++...||+|.-|..+.+.++...+++.||||+|+++|.++.+.|+++|+++|+
T Consensus         4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAiv   83 (200)
T KOG0092|consen    4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIV   83 (200)
T ss_pred             ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEE
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  161 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i  161 (205)
                      |||+++.+||..+..|+.++.+...+++-|.+||||+||.+ .+++..++++.++...+..++|+||+++.|++++|..|
T Consensus        84 vYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~-~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I  162 (200)
T KOG0092|consen   84 VYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLE-RREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI  162 (200)
T ss_pred             EEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhh-cccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence            99999999999999999999998888889999999999976 68899999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccCCC--CCCccccccCCCCCCCCCCCCCCCCCcC
Q 028686          162 ARDIKQRLADTDSR--SEPSTIKINQPDQAGGVGQAAQKSACCG  203 (205)
Q Consensus       162 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~c~~  203 (205)
                      .+.+..........  .++.++.+.+.+      ......+|||
T Consensus       163 a~~lp~~~~~~~~~~~~~~~g~~l~~~~------~~~~~~~~C~  200 (200)
T KOG0092|consen  163 AEKLPCSDPQERQGLPNRRQGVDLNSNQ------EPARPSGCCA  200 (200)
T ss_pred             HHhccCccccccccccccccceecccCC------CCcCcCCcCC
Confidence            99998877665542  222444444432      3344566775

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.2e-41  Score=243.86  Aligned_cols=173  Identities=71%  Similarity=1.147  Sum_probs=164.8

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+++|+++||||+++.+|..+.+...+..|+|+++..+.+.++++.+.+++|||+|+++++.+...|++.|+++++
T Consensus        11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~L   90 (207)
T KOG0078|consen   11 YLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILL   90 (207)
T ss_pred             eEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEE
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  161 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i  161 (205)
                      |||+++..||+++..|+..|..+..+++|+++||||+|+.. .+.+..+..+++|.++|+.++|+||++|.||+++|..|
T Consensus        91 vyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~-~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~L  169 (207)
T KOG0078|consen   91 VYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEE-KRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSL  169 (207)
T ss_pred             EEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccc-cccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHH
Confidence            99999999999999999999999988999999999999966 78899999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccCCC
Q 028686          162 ARDIKQRLADTDSR  175 (205)
Q Consensus       162 ~~~~~~~~~~~~~~  175 (205)
                      .+.+.++.+..+..
T Consensus       170 a~~i~~k~~~~~~~  183 (207)
T KOG0078|consen  170 ARDILQKLEDAELE  183 (207)
T ss_pred             HHHHHhhcchhhhc
Confidence            99999866654433

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=4.5e-39  Score=240.19  Aligned_cols=198  Identities=39%  Similarity=0.774  Sum_probs=169.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      +.|+++|+.|||||||+++|..+.+...+.+|.+.++..+.+.+++..+.+.+||++|+++|+.++..+++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            36899999999999999999999999999999999999888999999999999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHh-CCcEEEEcCCCCCCHHHHHHHHH
Q 028686           84 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        84 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      |+++++||+++..|++.+......++|+++|+||+||.+ ..++..+++++++++. ++.++++||++|.||+++|++++
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~-~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~  159 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET-DREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLV  159 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc-ccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHH
Confidence            999999999999999998877667899999999999965 5678888889998875 78999999999999999999999


Q ss_pred             HHHHHHhcc--cCCCCCCcccccc-CCCCCCCCCCCCCCCCCc
Q 028686          163 RDIKQRLAD--TDSRSEPSTIKIN-QPDQAGGVGQAAQKSACC  202 (205)
Q Consensus       163 ~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~c~  202 (205)
                      +.+.+....  ...+...+-++++ .|..+....+..+--.||
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (202)
T cd04120         160 DDILKKMPLDILRNELSNSILSLQPEPEIPPELPPPRPHVRCC  202 (202)
T ss_pred             HHHHHhCccccccccccchhhccCCCCCCCcCCCCCCCCcccC
Confidence            988765332  2333444444444 444566666666766676

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=7.8e-40  Score=230.68  Aligned_cols=169  Identities=40%  Similarity=0.676  Sum_probs=158.8

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+++|++|+|||||++++.+.+|...+..|+|.++..+.+.++++.+.++||||+|+++|.++...+++.+|.+++|
T Consensus         9 lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlv   88 (210)
T KOG0394|consen    9 LLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLV   88 (210)
T ss_pred             ceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEE
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCC-CCccCHHHHHHHHHHhC-CcEEEEcCCCCCCHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDES-KRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQ  156 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~----~~~piiiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~  156 (205)
                      ||+++++||+.+..|.+++.....    ...|+||+|||.|+.+. ++.++...++.|+...| +||||+||++..||++
T Consensus        89 ydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~  168 (210)
T KOG0394|consen   89 YDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVDE  168 (210)
T ss_pred             eecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccHHH
Confidence            999999999999999999987765    34799999999999763 47899999999999887 8999999999999999


Q ss_pred             HHHHHHHHHHHHhcc
Q 028686          157 VFFSIARDIKQRLAD  171 (205)
Q Consensus       157 ~~~~i~~~~~~~~~~  171 (205)
                      +|+.+.+.++.....
T Consensus       169 AFe~ia~~aL~~E~~  183 (210)
T KOG0394|consen  169 AFEEIARRALANEDR  183 (210)
T ss_pred             HHHHHHHHHHhccch
Confidence            999999999987764

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.1e-39  Score=227.46  Aligned_cols=171  Identities=48%  Similarity=0.841  Sum_probs=163.1

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+|++++|+.|+|||+|+.+|+...|.+.+..|+|.++....+.++++.+++++|||+|++.++++...|++.+.++|+|
T Consensus         6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLV   85 (216)
T KOG0098|consen    6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLV   85 (216)
T ss_pred             eEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEE
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||+++++||..+..|+..++++..++..|++++||+||.. .+.+..+|.+.|++++|..+.++||+++.||+++|....
T Consensus        86 ydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~-rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nta  164 (216)
T KOG0098|consen   86 YDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEA-RREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINTA  164 (216)
T ss_pred             EEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhc-cccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHHH
Confidence            9999999999999999999999888999999999999965 678999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccCC
Q 028686          163 RDIKQRLADTDS  174 (205)
Q Consensus       163 ~~~~~~~~~~~~  174 (205)
                      ..+....+....
T Consensus       165 ~~Iy~~~q~g~~  176 (216)
T KOG0098|consen  165 KEIYRKIQDGVF  176 (216)
T ss_pred             HHHHHHHHhccc
Confidence            999887765443

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=3.1e-38  Score=236.39  Aligned_cols=176  Identities=33%  Similarity=0.640  Sum_probs=156.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEEC-CEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      +||+++|++|||||||+++|+++.+...+.+|.+.++....+.++ +..+.+.+||++|++.+..++..++++++++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999999988899999999888888887 7889999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhc----CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC-CcEEEEcCCCCCCHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHA----SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQV  157 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~----~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~  157 (205)
                      ||++++++|+.+..|+..+....    ..++|++||+||+|+.+ ...+..+++..+++..+ ..++++||++|.|++++
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~  159 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKK-RLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEA  159 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccc-ccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHH
Confidence            99999999999999999886542    25689999999999964 45677889999999988 69999999999999999


Q ss_pred             HHHHHHHHHHHhcccCCCCCCcc
Q 028686          158 FFSIARDIKQRLADTDSRSEPST  180 (205)
Q Consensus       158 ~~~i~~~~~~~~~~~~~~~~~~~  180 (205)
                      |+++++.+....+......++++
T Consensus       160 f~~l~~~l~~~~~~~~~~~~~~~  182 (201)
T cd04107         160 MRFLVKNILANDKNLQQAETPED  182 (201)
T ss_pred             HHHHHHHHHHhchhhHhhcCCCc
Confidence            99999999887666555555543

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.9e-39  Score=220.91  Aligned_cols=178  Identities=51%  Similarity=0.873  Sum_probs=162.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      ++.+++|++|+|||+|+.+|....|+..|..|+|.++..++++++|..++++|||++|+++|+.+...+++..+++++||
T Consensus         9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY   88 (198)
T KOG0079|consen    9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY   88 (198)
T ss_pred             HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHH
Q 028686           84 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR  163 (205)
Q Consensus        84 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~  163 (205)
                      |+++.|||.+...|++++...+ +.+|-++|+||.|+++ .+.+..++++.|+..-|+.+||+|+++.++++..|+-|.+
T Consensus        89 DVTn~ESF~Nv~rWLeei~~nc-dsv~~vLVGNK~d~~~-RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~  166 (198)
T KOG0079|consen   89 DVTNGESFNNVKRWLEEIRNNC-DSVPKVLVGNKNDDPE-RRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITK  166 (198)
T ss_pred             ECcchhhhHhHHHHHHHHHhcC-ccccceecccCCCCcc-ceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHH
Confidence            9999999999999999999887 4799999999999965 6778899999999999999999999999999999999999


Q ss_pred             HHHHHh-cccCCCCCCccccc
Q 028686          164 DIKQRL-ADTDSRSEPSTIKI  183 (205)
Q Consensus       164 ~~~~~~-~~~~~~~~~~~~~~  183 (205)
                      .+++.. +++..+.....+++
T Consensus       167 qvl~~k~r~~~~~~r~~~~~l  187 (198)
T KOG0079|consen  167 QVLQAKLRESVEQQRADAVSL  187 (198)
T ss_pred             HHHHHHHhhcHHHHhhcceEe
Confidence            998876 44444333333333

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=8.4e-39  Score=220.65  Aligned_cols=182  Identities=41%  Similarity=0.685  Sum_probs=165.4

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+++|.+|+|||||+-+|..+.+++..+.|+|.++..+.+.+++.++++-||||+|+++|+.+.+.|++.|.++|+|
T Consensus        11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlV   90 (209)
T KOG0080|consen   11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILV   90 (209)
T ss_pred             eEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEE
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  161 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i  161 (205)
                      ||++.+++|..+..|++++..+.. +++-.++|+||+|-.+ ++.++.++..+|++.+++-++|+||++.+|+...|+.+
T Consensus        91 YDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes-~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Feel  169 (209)
T KOG0080|consen   91 YDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES-ERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEEL  169 (209)
T ss_pred             EEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh-cccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHH
Confidence            999999999999999999988874 7788899999999743 68899999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccCCCCCCccccccC
Q 028686          162 ARDIKQRLADTDSRSEPSTIKINQ  185 (205)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~  185 (205)
                      ++.+.+-..--+..+..-+..+.+
T Consensus       170 veKIi~tp~l~~~~n~~~~~~i~~  193 (209)
T KOG0080|consen  170 VEKIIETPSLWEEGNSSAGLDIAS  193 (209)
T ss_pred             HHHHhcCcchhhccCCcccccccc
Confidence            999987655544444444444443

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=6.1e-38  Score=231.99  Aligned_cols=165  Identities=44%  Similarity=0.739  Sum_probs=152.8

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+++|+.|||||||+.+|..+.+...+.++.+.++....+.+++..+.+.+||++|+++|..++..+++++|++|+
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill   84 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL   84 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence            35899999999999999999999999888888899988888888999999999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  161 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i  161 (205)
                      |||+++++||+++..|++.+.... +++|++|||||.||.+ ...+..++++.+++..+++++++||++|.||+++|+++
T Consensus        85 VfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~-~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l  162 (189)
T cd04121          85 VYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAF-KRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTEL  162 (189)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchh-ccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence            999999999999999999997765 6799999999999965 45688899999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 028686          162 ARDIKQR  168 (205)
Q Consensus       162 ~~~~~~~  168 (205)
                      .+.+...
T Consensus       163 ~~~i~~~  169 (189)
T cd04121         163 ARIVLMR  169 (189)
T ss_pred             HHHHHHh
Confidence            9888653

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=5.1e-38  Score=233.29  Aligned_cols=185  Identities=31%  Similarity=0.550  Sum_probs=158.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEe
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   84 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   84 (205)
                      ||+++|++|||||||+++|+.+.+...+.+|.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|+|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            689999999999999999999998888888887444 4556778888999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686           85 VTDESSFNNIRNWIRNIEQHAS---DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  161 (205)
Q Consensus        85 ~~~~~s~~~~~~~~~~i~~~~~---~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i  161 (205)
                      +++++||+.+..|+..+.....   .+.|+++|+||+|+.+ ...+..+++..++..++++++++||++|.|++++|+++
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l  158 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY-EREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTL  158 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc-cCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHH
Confidence            9999999999999999876542   5789999999999965 45677778888898889999999999999999999999


Q ss_pred             HHHHHHHhcccCCCCCCccccccCCCCCCCCCCCCCCCCCcC
Q 028686          162 ARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACCG  203 (205)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~  203 (205)
                      ++.+.++.+..            .+..+.+-.++.||++|||
T Consensus       159 ~~~l~~~~~~~------------~~~~~~~~~~~~~~~~~~~  188 (190)
T cd04144         159 VRALRQQRQGG------------QGPKGGPTKKKEKKKRKCV  188 (190)
T ss_pred             HHHHHHhhccc------------CCCcCCCCCcccccccCce
Confidence            99887666553            1334555667788888887

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.8e-38  Score=227.07  Aligned_cols=169  Identities=45%  Similarity=0.793  Sum_probs=161.2

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .|||+++|++++|||-|+.||..++|.....+|+|.++....+.++++.++.+||||+|+++|+.+..+|++.+.++++|
T Consensus        14 lFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllV   93 (222)
T KOG0087|consen   14 LFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLV   93 (222)
T ss_pred             EEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEEE
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||++.+.+|+++..|+.+++.+..+++++++||||+||.. .+.+..++++.+++..+..++++||.+..+++++|..++
T Consensus        94 YDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~-lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l  172 (222)
T KOG0087|consen   94 YDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNH-LRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVL  172 (222)
T ss_pred             EechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhh-ccccchhhhHhHHHhcCceEEEecccccccHHHHHHHHH
Confidence            9999999999999999999999999999999999999976 678899999999999999999999999999999999999


Q ss_pred             HHHHHHhccc
Q 028686          163 RDIKQRLADT  172 (205)
Q Consensus       163 ~~~~~~~~~~  172 (205)
                      ..+.......
T Consensus       173 ~~I~~~vs~k  182 (222)
T KOG0087|consen  173 TEIYKIVSKK  182 (222)
T ss_pred             HHHHHHHHHH
Confidence            8887765543

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=3.4e-37  Score=233.01  Aligned_cols=167  Identities=44%  Similarity=0.801  Sum_probs=153.7

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+++|++|||||||+++|.++.+...+.+|.+.++....+.+++..+.+.+||++|++++..++..+++.++++++|
T Consensus        12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv   91 (216)
T PLN03110         12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLV   91 (216)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEE
Confidence            58999999999999999999999998888889999999888999999999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||++++++|+.+..|+..+......++|+++|+||+|+.+ ...+..++++.++...+++++++||++|.|++++|++++
T Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~-~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~  170 (216)
T PLN03110         92 YDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNH-LRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTIL  170 (216)
T ss_pred             EECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhccc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999999999999887666899999999999965 456777888899988899999999999999999999999


Q ss_pred             HHHHHHhc
Q 028686          163 RDIKQRLA  170 (205)
Q Consensus       163 ~~~~~~~~  170 (205)
                      ..+.+...
T Consensus       171 ~~i~~~~~  178 (216)
T PLN03110        171 LEIYHIIS  178 (216)
T ss_pred             HHHHHHhh
Confidence            99877543

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=1.3e-37  Score=234.86  Aligned_cols=188  Identities=28%  Similarity=0.480  Sum_probs=155.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      +||+++|.+|||||||+++|+.+.+.. +.+|.+.++.....    ..+.+.+||++|++.+..++..+++++|++|+||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            589999999999999999999999865 57888877665443    4578999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC------------------CCCccCHHHHHHHHHHhC-----
Q 028686           84 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE------------------SKRAVPTSKGQALADEYG-----  140 (205)
Q Consensus        84 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~------------------~~~~~~~~~~~~~~~~~~-----  140 (205)
                      |++++++|+++..|+..+.+...+++|++||+||+||.+                  ....+..+++..++++.+     
T Consensus        76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~  155 (220)
T cd04126          76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML  155 (220)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence            999999999999988888776556799999999999965                  146788899999998876     


Q ss_pred             ---------CcEEEEcCCCCCCHHHHHHHHHHHHHHHhcccCCCCCCccccccCCCCCCCCCCCCCCCCCc
Q 028686          141 ---------IKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACC  202 (205)
Q Consensus       141 ---------~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  202 (205)
                               ++|+|+||++|.||+++|..+++.+.+...+.....+...      ......+++.+|++||
T Consensus       156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~  220 (220)
T cd04126         156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQ------GTVNLPNPKRSKSKCC  220 (220)
T ss_pred             cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhh------ccccCCCcccCCCCCC
Confidence                     6899999999999999999999999876655544222211      1222334778888888

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=7.3e-37  Score=228.61  Aligned_cols=168  Identities=54%  Similarity=0.906  Sum_probs=152.4

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+|+|++|||||||+++|.++.+...+.+|.+.++....+.+++..+.+.+||+||++.+..++..++++++++++|
T Consensus         6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv   85 (199)
T cd04110           6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVV   85 (199)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEE
Confidence            58999999999999999999999998888899999888888888888889999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||++++++|+.+..|++.+.... +..|++||+||+|+.+ ...+..+++..++...+++++++||++|.||+++|++|.
T Consensus        86 ~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~  163 (199)
T cd04110          86 YDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPE-RKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCIT  163 (199)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHH
Confidence            99999999999999999987765 5689999999999965 445677888889988899999999999999999999999


Q ss_pred             HHHHHHhccc
Q 028686          163 RDIKQRLADT  172 (205)
Q Consensus       163 ~~~~~~~~~~  172 (205)
                      +.+.....+.
T Consensus       164 ~~~~~~~~~~  173 (199)
T cd04110         164 ELVLRAKKDN  173 (199)
T ss_pred             HHHHHhhhcc
Confidence            9998764443

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=4.4e-37  Score=228.36  Aligned_cols=165  Identities=29%  Similarity=0.572  Sum_probs=146.6

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   80 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   80 (205)
                      |..+||+++|++|||||||+.+|..+.+...+.||.+..+ ...+.+++..+.+.+|||+|+++|+.++..+++++|++|
T Consensus         1 ~~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~i   79 (191)
T cd01875           1 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFI   79 (191)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEE
Confidence            7779999999999999999999999999889999998655 455678889999999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCC-----------CccCHHHHHHHHHHhC-CcEEEEc
Q 028686           81 LVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYG-IKFFETS  147 (205)
Q Consensus        81 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~~S  147 (205)
                      +|||+++++||+++. .|...+.... +++|++||+||.||.+..           ..+..++++.+++..+ ++|+++|
T Consensus        80 lvydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~S  158 (191)
T cd01875          80 ICFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECS  158 (191)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeC
Confidence            999999999999997 5888887654 579999999999996532           2366788899999988 6999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHH
Q 028686          148 AKTNLNVEQVFFSIARDIKQ  167 (205)
Q Consensus       148 a~~~~gi~~~~~~i~~~~~~  167 (205)
                      |++|.||+++|+++++.+..
T Consensus       159 Ak~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         159 ALNQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             CCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999988754

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=8.2e-37  Score=231.74  Aligned_cols=169  Identities=20%  Similarity=0.417  Sum_probs=150.7

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+++|++|||||+|+++|..+.+...+.||.+.++. ..+.+++..+.+.+|||+|++.|..+...+++++|++|+
T Consensus        12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl   90 (232)
T cd04174          12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL   90 (232)
T ss_pred             eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence            3589999999999999999999999999999999987664 567889999999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC-----------CCccCHHHHHHHHHHhCC-cEEEEcC
Q 028686           82 VYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETSA  148 (205)
Q Consensus        82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa  148 (205)
                      |||+++++||+.+ ..|++.+.... ++.|+++|+||+||.+.           ...+..++++.+++++++ .|+|+||
T Consensus        91 VyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSA  169 (232)
T cd04174          91 CFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSA  169 (232)
T ss_pred             EEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccC
Confidence            9999999999985 78999998765 57899999999999642           256889999999999998 6999999


Q ss_pred             CCCC-CHHHHHHHHHHHHHHHhccc
Q 028686          149 KTNL-NVEQVFFSIARDIKQRLADT  172 (205)
Q Consensus       149 ~~~~-gi~~~~~~i~~~~~~~~~~~  172 (205)
                      ++|. ||+++|..++..+.+.....
T Consensus       170 ktg~~~V~e~F~~~~~~~~~~~~~~  194 (232)
T cd04174         170 FTSEKSIHSIFRSASLLCLNKLSPP  194 (232)
T ss_pred             CcCCcCHHHHHHHHHHHHHHhcccc
Confidence            9997 89999999999987764443

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=1e-36  Score=226.43  Aligned_cols=190  Identities=47%  Similarity=0.861  Sum_probs=161.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      +||+++|++|||||||+++|.++.+. ..+.+|.+.++....+.+++..+.+.+||+||++++..++..+++.+|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            58999999999999999999999875 46778888888877888899999999999999999999899999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||++++++|+++..|+..+......++|+++|+||+|+.. ...+..+++..++..++++|+++||++|.|++++|++|.
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~-~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~  159 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSG-ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVA  159 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchh-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999999999999887666799999999999964 355667888889988999999999999999999999999


Q ss_pred             HHHHHHhcccCCCCCCccccccCCCCCCCCCCCCCCCCCc
Q 028686          163 RDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACC  202 (205)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  202 (205)
                      +.+.+...++....+- ..       ..-+.+.+++++||
T Consensus       160 ~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~  191 (191)
T cd04112         160 KELKHRKYEQPDEGKF-KI-------SDYVTKQKKISRCC  191 (191)
T ss_pred             HHHHHhccccCCCCcE-Ee-------ccccCcccccCCCC
Confidence            9998775443333221 11       12234567788887

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=3.2e-36  Score=223.24  Aligned_cols=167  Identities=48%  Similarity=0.806  Sum_probs=151.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      +||+++|++|||||||+++|.++.+...+.+|.+.++....+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999999998878899998888888888888899999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHH
Q 028686           84 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR  163 (205)
Q Consensus        84 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~  163 (205)
                      |++++++|+.+..|+..+......+.|+++++||.|+.+ ...+..+++..++...+++++++||+++.|++++|.++++
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~  159 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVN-NKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVK  159 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcc-cccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            999999999999999999887666789999999999864 4556778888888888899999999999999999999999


Q ss_pred             HHHHHhcc
Q 028686          164 DIKQRLAD  171 (205)
Q Consensus       164 ~~~~~~~~  171 (205)
                      .+..+...
T Consensus       160 ~~~~~~~~  167 (188)
T cd04125         160 LIIKRLEE  167 (188)
T ss_pred             HHHHHhhc
Confidence            99765443

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=2.2e-36  Score=219.79  Aligned_cols=164  Identities=46%  Similarity=0.800  Sum_probs=151.0

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+++|++|||||||+++|.++.+...+.+|.+.++....+.+++..+.+.+||+||++.+..++..+++++|++|+|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            48999999999999999999999999888889999888888888899999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||++++++|+.+..|++.+.....++.|+++|+||+|+.+ ...+..+++.++++..+++++++||++|.|++++|.++.
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~  160 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEA-QRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETA  160 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999999999877667799999999999965 456778889999999999999999999999999999999


Q ss_pred             HHHHH
Q 028686          163 RDIKQ  167 (205)
Q Consensus       163 ~~~~~  167 (205)
                      +.+.+
T Consensus       161 ~~~~~  165 (166)
T cd04122         161 KKIYQ  165 (166)
T ss_pred             HHHhh
Confidence            87754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=1.4e-36  Score=223.71  Aligned_cols=162  Identities=23%  Similarity=0.486  Sum_probs=147.0

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+++|++|+|||||+++|..+.+...+.||.+..+ ...+.+++..+.+.+|||+|+++|..+++.+++++|++|+|
T Consensus         5 ~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilv   83 (182)
T cd04172           5 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   83 (182)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEE
Confidence            58999999999999999999999999999999998655 46778899999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC-----------CCccCHHHHHHHHHHhCC-cEEEEcCC
Q 028686           83 YDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETSAK  149 (205)
Q Consensus        83 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~  149 (205)
                      ||+++++||+++ ..|++.+.... ++.|++||+||.||.+.           ...+..+++++++++.++ +|+|+||+
T Consensus        84 yDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk  162 (182)
T cd04172          84 FDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL  162 (182)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcC
Confidence            999999999997 78999998766 57999999999999642           245889999999999995 89999999


Q ss_pred             CCCC-HHHHHHHHHHHHH
Q 028686          150 TNLN-VEQVFFSIARDIK  166 (205)
Q Consensus       150 ~~~g-i~~~~~~i~~~~~  166 (205)
                      +|.| |+++|+.+++.+.
T Consensus       163 ~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         163 QSENSVRDIFHVATLACV  180 (182)
T ss_pred             CCCCCHHHHHHHHHHHHh
Confidence            9998 9999999998654

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=1.3e-36  Score=222.50  Aligned_cols=162  Identities=32%  Similarity=0.643  Sum_probs=146.0

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+++|++|+|||+|+.++..+.+...+.||.+..+ ...+.+++..+.+.+|||+|+++++.+...++++++++|+|
T Consensus         1 ~~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv   79 (176)
T cd04133           1 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   79 (176)
T ss_pred             CeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEE
Confidence            47999999999999999999999999989999998665 45677889999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCCC---------CccCHHHHHHHHHHhCC-cEEEEcCCCC
Q 028686           83 YDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDESK---------RAVPTSKGQALADEYGI-KFFETSAKTN  151 (205)
Q Consensus        83 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~---------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  151 (205)
                      ||+++++||+++ ..|+..+.... +++|++|||||+||.+..         ..+..+++..+++..++ +|+|+||++|
T Consensus        80 yd~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~  158 (176)
T cd04133          80 FSLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQ  158 (176)
T ss_pred             EEcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcc
Confidence            999999999998 68999998765 579999999999996432         24788999999999997 6999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 028686          152 LNVEQVFFSIARDIK  166 (205)
Q Consensus       152 ~gi~~~~~~i~~~~~  166 (205)
                      .||+++|+.+++.+.
T Consensus       159 ~nV~~~F~~~~~~~~  173 (176)
T cd04133         159 QNVKAVFDAAIKVVL  173 (176)
T ss_pred             cCHHHHHHHHHHHHh
Confidence            999999999998763

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=8.1e-36  Score=224.69  Aligned_cols=170  Identities=42%  Similarity=0.744  Sum_probs=152.5

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEE-CCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      .+||+|+|++|||||||+++|.++.+...+.+|.+.++....+.+ ++..+.+.+||++|++.+..++..+++++|++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            589999999999999999999999988888899998888888877 4677899999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  160 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  160 (205)
                      |||+++++||+++..|+..+..... ...|++||+||.|+.+ ...+..++...+++.++++++++||++|.|++++|++
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~  160 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLES-QRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL  160 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccc-ccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence            9999999999999999999987653 4578899999999965 4567888899999999999999999999999999999


Q ss_pred             HHHHHHHHhcccC
Q 028686          161 IARDIKQRLADTD  173 (205)
Q Consensus       161 i~~~~~~~~~~~~  173 (205)
                      |.+.+.++....+
T Consensus       161 l~~~~~~~~~~~~  173 (211)
T cd04111         161 LTQEIYERIKRGE  173 (211)
T ss_pred             HHHHHHHHhhcCC
Confidence            9999887755443

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.8e-37  Score=209.41  Aligned_cols=174  Identities=43%  Similarity=0.732  Sum_probs=164.5

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+|++++|+.|+|||+|+++|+..++......|+|.++.+..+.+.++.++++||||+|+++|++....|++.|.++++|
T Consensus         9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLV   88 (214)
T KOG0086|consen    9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLV   88 (214)
T ss_pred             hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEE
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||+++++||+.+..|+..++....+++.+++++||.||.+ ++++...++..|++++.+.++|+||++|+++++.|-...
T Consensus        89 YD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~-~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~  167 (214)
T KOG0086|consen   89 YDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDP-EREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCA  167 (214)
T ss_pred             EeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcCh-hhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHH
Confidence            9999999999999999999999889999999999999965 788999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccCCCCC
Q 028686          163 RDIKQRLADTDSRSE  177 (205)
Q Consensus       163 ~~~~~~~~~~~~~~~  177 (205)
                      +.+..+.+..+-.++
T Consensus       168 ~tIl~kIE~GElDPe  182 (214)
T KOG0086|consen  168 RTILNKIESGELDPE  182 (214)
T ss_pred             HHHHHHHhhcCCCHH
Confidence            999988776554443

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=4.9e-36  Score=226.38  Aligned_cols=170  Identities=23%  Similarity=0.434  Sum_probs=147.1

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+|+|++|||||||+++|..+.+...+.||.+.++. ..+.+++..+.+.+|||+|++.|..+++.+++++|++|+|
T Consensus         1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv   79 (222)
T cd04173           1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC   79 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence            379999999999999999999999999999999986654 5678899999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCC-----------CccCHHHHHHHHHHhCC-cEEEEcCC
Q 028686           83 YDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETSAK  149 (205)
Q Consensus        83 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~  149 (205)
                      ||++++++|+.+. .|...+.... +++|++||+||+||.+..           ..+..+++..++++.++ +|+|+||+
T Consensus        80 fdis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk  158 (222)
T cd04173          80 FDISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR  158 (222)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence            9999999999995 5777665544 679999999999996421           23678899999999995 89999999


Q ss_pred             CCC-CHHHHHHHHHHHHHHHhcccCC
Q 028686          150 TNL-NVEQVFFSIARDIKQRLADTDS  174 (205)
Q Consensus       150 ~~~-gi~~~~~~i~~~~~~~~~~~~~  174 (205)
                      ++. ||+++|+.++.+..........
T Consensus       159 ~~~~~V~~~F~~~~~~~~~~~~~~~~  184 (222)
T cd04173         159 SSERSVRDVFHVATVASLGRGHRQLR  184 (222)
T ss_pred             cCCcCHHHHHHHHHHHHHhccCCccc
Confidence            988 5999999999988775544333

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=6.2e-36  Score=226.11  Aligned_cols=164  Identities=33%  Similarity=0.539  Sum_probs=148.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECC-EEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG-KRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      +||+++|++|||||||+++|.++.+...+.+|.+.+++...+.+++ ..+.+.+||++|++.+..++..+++++|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999999999999999999888888864 578999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHAS---DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF  159 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~---~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  159 (205)
                      ||++++++|+++..|+..+.....   .+.|+++|+||.|+.+ ...+..++...+++.++++++++||++|+|++++|+
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~-~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~  159 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEH-NRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQ  159 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence            999999999999999999987643   3578999999999964 456778888999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 028686          160 SIARDIKQR  168 (205)
Q Consensus       160 ~i~~~~~~~  168 (205)
                      ++.+.+...
T Consensus       160 ~l~~~l~~~  168 (215)
T cd04109         160 QLAAELLGV  168 (215)
T ss_pred             HHHHHHHhc
Confidence            999998764

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=2.6e-36  Score=221.64  Aligned_cols=162  Identities=23%  Similarity=0.474  Sum_probs=145.9

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      ++||+++|++|||||||+++|.++.+...+.||.+..+. ..+.+++..+.+.+|||+|++.+..+.+.+++++|++|+|
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv   79 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC   79 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence            479999999999999999999999999899999986654 6778899999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC-----------CCccCHHHHHHHHHHhCC-cEEEEcCC
Q 028686           83 YDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETSAK  149 (205)
Q Consensus        83 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~  149 (205)
                      ||+++++||+++ ..|++.+.... +++|+++|+||.||.+.           ...+..++++++++++++ +|+|+||+
T Consensus        80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~  158 (178)
T cd04131          80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF  158 (178)
T ss_pred             EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence            999999999996 78999998776 57999999999999641           235888999999999996 89999999


Q ss_pred             CCCC-HHHHHHHHHHHHH
Q 028686          150 TNLN-VEQVFFSIARDIK  166 (205)
Q Consensus       150 ~~~g-i~~~~~~i~~~~~  166 (205)
                      +|++ |+++|..+++.++
T Consensus       159 ~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         159 TSEKSVRDIFHVATMACL  176 (178)
T ss_pred             cCCcCHHHHHHHHHHHHh
Confidence            9995 9999999999654

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=3.8e-36  Score=223.08  Aligned_cols=168  Identities=37%  Similarity=0.605  Sum_probs=148.6

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   80 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   80 (205)
                      |..+||+++|++|||||||+++++++.+...+.||.+..+ ...+.+++..+.+.+|||+|++++..++..+++.+|+++
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii   81 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL   81 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence            4569999999999999999999999998888888887555 566778888899999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHH
Q 028686           81 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF  159 (205)
Q Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  159 (205)
                      +|||++++++|+.+..|+..+.+.. ..++|+++|+||.|+.+ ...+..+++..++..++++++++||++|.|++++|.
T Consensus        82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~-~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~  160 (189)
T PTZ00369         82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS-ERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFY  160 (189)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHH
Confidence            9999999999999999999987664 35789999999999864 455677788888888889999999999999999999


Q ss_pred             HHHHHHHHHhc
Q 028686          160 SIARDIKQRLA  170 (205)
Q Consensus       160 ~i~~~~~~~~~  170 (205)
                      ++++.+.+..+
T Consensus       161 ~l~~~l~~~~~  171 (189)
T PTZ00369        161 ELVREIRKYLK  171 (189)
T ss_pred             HHHHHHHHHhh
Confidence            99998876433

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=1.3e-35  Score=220.77  Aligned_cols=168  Identities=33%  Similarity=0.598  Sum_probs=148.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCC-CcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      +||+|+|++|+|||||+++|+++.+.. .+.+|.+.++....+.+++..+.+.+||++|++++..++..+++++|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999998874 6888998888888889999999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC---CCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES---KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF  159 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  159 (205)
                      ||++++++|+++..|++.+.... ++.|+++|+||+|+.+.   ...+..+++..++..++++++++||+++.|++++|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  159 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ  159 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999987654 47999999999998542   234556778888888889999999999999999999


Q ss_pred             HHHHHHHHHhccc
Q 028686          160 SIARDIKQRLADT  172 (205)
Q Consensus       160 ~i~~~~~~~~~~~  172 (205)
                      ++.+.+.+.....
T Consensus       160 ~i~~~~~~~~~~~  172 (193)
T cd04118         160 KVAEDFVSRANNQ  172 (193)
T ss_pred             HHHHHHHHhcccc
Confidence            9999998765443

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=7.6e-37  Score=211.56  Aligned_cols=200  Identities=38%  Similarity=0.613  Sum_probs=174.4

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEE-CCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      .+|++++|++-+|||+|++.|..+++.+-..||.|.|++...+.+ +|..+++++|||+|+++|+++...|++++-++++
T Consensus         8 qfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvll   87 (213)
T KOG0091|consen    8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLL   87 (213)
T ss_pred             EEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEE
Confidence            589999999999999999999999999999999999998777655 6789999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcC-CCC-cEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHAS-DNV-NKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF  159 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~-piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  159 (205)
                      |||++|++||+++..|+.+...+.. |.. ...+|++|+||.. .++++.+++++++...|+.++|+||++|.||++.|+
T Consensus        88 vyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~S-qRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~  166 (213)
T KOG0091|consen   88 VYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQS-QRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFD  166 (213)
T ss_pred             EEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhh-hccccHHHHHHHHHhcCceEEEecccCCCcHHHHHH
Confidence            9999999999999999999887765 444 4468899999974 789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccCCC--CCCcccc-ccCCCCCCCCCCCCCCCCCcC
Q 028686          160 SIARDIKQRLADTDSR--SEPSTIK-INQPDQAGGVGQAAQKSACCG  203 (205)
Q Consensus       160 ~i~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~c~~  203 (205)
                      .+.+.+....+..+..  ..=..++ ..+.+.+.+..-+.+.+.|||
T Consensus       167 mlaqeIf~~i~qGeik~edgw~gvKSsrpn~i~~s~~~~~P~k~c~C  213 (213)
T KOG0091|consen  167 MLAQEIFQAIQQGEIKLEDGWGGVKSSRPNQIPRSPSRKQPSKPCQC  213 (213)
T ss_pred             HHHHHHHHHHhcCceeeeeccccccccCCCcCCCcccccCCCCCCCC
Confidence            9999998877663332  2212222 556777777788888899998

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=1.1e-35  Score=216.39  Aligned_cols=165  Identities=73%  Similarity=1.188  Sum_probs=151.9

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+++|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++++
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            36899999999999999999999999999999999988888888889888999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  161 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i  161 (205)
                      |||++++++|.++..|+..+.+....++|+++|+||+|+.+ ...+..+++..++...+.+++++||+++.|++++|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  160 (167)
T cd01867          82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEE-KRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL  160 (167)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999887666799999999999975 45567788888999889999999999999999999999


Q ss_pred             HHHHHH
Q 028686          162 ARDIKQ  167 (205)
Q Consensus       162 ~~~~~~  167 (205)
                      .+++..
T Consensus       161 ~~~~~~  166 (167)
T cd01867         161 AKDIKK  166 (167)
T ss_pred             HHHHHh
Confidence            998865

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=1.3e-35  Score=217.01  Aligned_cols=163  Identities=33%  Similarity=0.552  Sum_probs=147.2

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+++|++|||||||+++|..+.+...+.||.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++++|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            57999999999999999999999999888888887545 45677888899999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  161 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i  161 (205)
                      ||+++++||+.+..|+..+.+.. .+++|+++|+||+|+.+ ...+..++...+++..+++|+++||++|.||+++|+++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~-~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l  159 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLES-QRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGL  159 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhh-cCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHH
Confidence            99999999999999988887754 35799999999999965 45678889999999999999999999999999999999


Q ss_pred             HHHHHH
Q 028686          162 ARDIKQ  167 (205)
Q Consensus       162 ~~~~~~  167 (205)
                      ++.+.+
T Consensus       160 ~~~~~~  165 (172)
T cd04141         160 VREIRR  165 (172)
T ss_pred             HHHHHH
Confidence            988876

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=1.7e-35  Score=214.18  Aligned_cols=160  Identities=49%  Similarity=0.910  Sum_probs=147.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      ++|+++|++|+|||||++++.++.+...+.+|.+.++....+.+++..+.+.+||++|++++..++..+++.+|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            58999999999999999999999998888999998888888889988899999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHH
Q 028686           84 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR  163 (205)
Q Consensus        84 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~  163 (205)
                      |+++++||+.+..|++.+......+.|+++|+||.|+.. ...+..+++..+++..+.+|+++||++|.|++++|.+|.+
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~  159 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQ-KRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTE  159 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHh
Confidence            999999999999999999877655799999999999965 4567788999999988999999999999999999999986


Q ss_pred             H
Q 028686          164 D  164 (205)
Q Consensus       164 ~  164 (205)
                      .
T Consensus       160 ~  160 (161)
T cd04117         160 L  160 (161)
T ss_pred             h
Confidence            4

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=1.8e-35  Score=213.95  Aligned_cols=161  Identities=39%  Similarity=0.767  Sum_probs=153.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEe
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   84 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   84 (205)
                      ||+++|+++||||||+++|.++.+...+.+|.+.+.....+.+++..+.+.+||++|++++..+...+++++|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHHH
Q 028686           85 VTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARD  164 (205)
Q Consensus        85 ~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~  164 (205)
                      +++++||+.+..|++.+......+.|++|++||.|+.+ ...+..++++.++++++.+|+++||+++.||.++|..+++.
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~  159 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSD-EREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRK  159 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGG-GSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccceeeeccccccc-cccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999999999999988866799999999999965 57788999999999999999999999999999999999998


Q ss_pred             HH
Q 028686          165 IK  166 (205)
Q Consensus       165 ~~  166 (205)
                      +.
T Consensus       160 i~  161 (162)
T PF00071_consen  160 IL  161 (162)
T ss_dssp             HH
T ss_pred             Hh
Confidence            75

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=3.1e-35  Score=213.60  Aligned_cols=163  Identities=51%  Similarity=0.904  Sum_probs=148.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      +||+++|++|||||||+++|.++++...+.+|.+.++....+..++..+.+.+||++|++++..++..+++++|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999998888899988888777778888899999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHH
Q 028686           84 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR  163 (205)
Q Consensus        84 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~  163 (205)
                      |++++++|+.+..|+..+......+.|+++|+||+|+.+ ...+..++..+++...+++++++||+++.|++++|+++.+
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMED-ERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVD  160 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCc-ccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            999999999999999999877656799999999999965 3445677888888888999999999999999999999998


Q ss_pred             HHHH
Q 028686          164 DIKQ  167 (205)
Q Consensus       164 ~~~~  167 (205)
                      .+..
T Consensus       161 ~~~~  164 (165)
T cd01865         161 IICD  164 (165)
T ss_pred             HHHh
Confidence            7653

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=2.8e-35  Score=217.99  Aligned_cols=166  Identities=30%  Similarity=0.560  Sum_probs=144.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEEC-CEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      +||+++|++|||||||+++|.++.+...+.++.+.++... +... +..+.+.+|||+|++++..++..+++.+|++++|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            5899999999999999999999999888888888776543 4454 7788999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCC---CccCHHHHHHHHHHhCC-cEEEEcCCCCCCHHHH
Q 028686           83 YDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK---RAVPTSKGQALADEYGI-KFFETSAKTNLNVEQV  157 (205)
Q Consensus        83 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~  157 (205)
                      ||+++++||+++. .|+..+.... +++|+++|+||.|+....   ..+..+++++++..+++ +++++||++|.|++++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  158 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV  158 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence            9999999999996 4888876554 579999999999986422   34667888999999987 9999999999999999


Q ss_pred             HHHHHHHHHHHhcc
Q 028686          158 FFSIARDIKQRLAD  171 (205)
Q Consensus       158 ~~~i~~~~~~~~~~  171 (205)
                      |+.+++.+......
T Consensus       159 f~~l~~~~~~~~~~  172 (187)
T cd04132         159 FDTAIEEALKKEGK  172 (187)
T ss_pred             HHHHHHHHHhhhhh
Confidence            99999999875554

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=2.6e-35  Score=217.18  Aligned_cols=163  Identities=25%  Similarity=0.504  Sum_probs=145.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      +||+++|++|||||||+++|+++.+...+.||.+.++..+.+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999998889999999998888999999999999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC----CCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHH
Q 028686           84 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES----KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF  159 (205)
Q Consensus        84 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  159 (205)
                      |++++++|+++..|++.+........| ++|+||+|+...    ......++++.+++..+++++++||++|.|++++|+
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~  159 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK  159 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999999876545566 678999999531    112234667788888889999999999999999999


Q ss_pred             HHHHHHHH
Q 028686          160 SIARDIKQ  167 (205)
Q Consensus       160 ~i~~~~~~  167 (205)
                      ++.+.+.+
T Consensus       160 ~l~~~l~~  167 (182)
T cd04128         160 IVLAKAFD  167 (182)
T ss_pred             HHHHHHHh
Confidence            99988865

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=4.4e-35  Score=212.85  Aligned_cols=163  Identities=64%  Similarity=1.058  Sum_probs=149.9

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++++..++..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            47999999999999999999999998888889998888888888888889999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||++++++|.++..|+..+.....++.|+++|+||.|+.. ...+..+++..+++..+++++++||++|.|++++|.++.
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  160 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTD-KRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMA  160 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhccc-ccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHH
Confidence            9999999999999999999877656799999999999865 455777888999999999999999999999999999999


Q ss_pred             HHHH
Q 028686          163 RDIK  166 (205)
Q Consensus       163 ~~~~  166 (205)
                      +.+.
T Consensus       161 ~~~~  164 (166)
T cd01869         161 REIK  164 (166)
T ss_pred             HHHH
Confidence            8875

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=1.7e-34  Score=217.47  Aligned_cols=169  Identities=49%  Similarity=0.829  Sum_probs=153.5

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus         6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv   85 (210)
T PLN03108          6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEE
Confidence            47999999999999999999999998888888999888888888998889999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||++++++|+.+..|+..+.....+..|+++|+||.|+.+ ...+..++++.+++.++++++++||+++.|++++|.+++
T Consensus        86 ~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~  164 (210)
T PLN03108         86 YDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH-RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA  164 (210)
T ss_pred             EECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999999999988776656799999999999965 456778899999999999999999999999999999999


Q ss_pred             HHHHHHhccc
Q 028686          163 RDIKQRLADT  172 (205)
Q Consensus       163 ~~~~~~~~~~  172 (205)
                      +.+.+...+.
T Consensus       165 ~~~~~~~~~~  174 (210)
T PLN03108        165 AKIYKKIQDG  174 (210)
T ss_pred             HHHHHHhhhc
Confidence            9998765433

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.1e-36  Score=204.30  Aligned_cols=172  Identities=44%  Similarity=0.800  Sum_probs=159.7

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+++|..|+|||+|+++|..+-|++....|+|.++..+++.+++..++++||||+|+++|+++...|++.|+++|+
T Consensus         6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalil   85 (213)
T KOG0095|consen    6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (213)
T ss_pred             eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEE
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  161 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i  161 (205)
                      |||++...||+-+..|+.+|..+.+.++--|+|+||.|+.+ ++++..+..++|.....+.++|+||++-.+++.+|..+
T Consensus        86 vydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~d-rrevp~qigeefs~~qdmyfletsakea~nve~lf~~~  164 (213)
T KOG0095|consen   86 VYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLAD-RREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDL  164 (213)
T ss_pred             EEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhh-hhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHH
Confidence            99999999999999999999999988888899999999965 66788888899999888899999999999999999998


Q ss_pred             HHHHHHHhcccCC
Q 028686          162 ARDIKQRLADTDS  174 (205)
Q Consensus       162 ~~~~~~~~~~~~~  174 (205)
                      .-.+....+..+.
T Consensus       165 a~rli~~ar~~d~  177 (213)
T KOG0095|consen  165 ACRLISEARQNDL  177 (213)
T ss_pred             HHHHHHHHHhccc
Confidence            8887766655444

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=5.1e-35  Score=215.20  Aligned_cols=166  Identities=46%  Similarity=0.854  Sum_probs=148.4

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEEC----------CEEEEEEEEeCCChhhhhhhhhh
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD----------GKRIKLQIWDTAGQERFRTITTA   71 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~----------~~~~~~~i~D~~g~~~~~~~~~~   71 (205)
                      ..+||+++|++|||||||+++|.++.+...+.+|.+.++....+.+.          +..+.+.+||++|++++..++..
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   82 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA   82 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence            35899999999999999999999999999999999988877666554          45689999999999999999999


Q ss_pred             hccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCC
Q 028686           72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT  150 (205)
Q Consensus        72 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  150 (205)
                      +++++|++++|||+++++||.++..|+..+.... .++.|+++|+||+|+.+ ...+..+++..+++..+++++++||++
T Consensus        83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sak~  161 (180)
T cd04127          83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLED-QRQVSEEQAKALADKYGIPYFETSAAT  161 (180)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchh-cCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence            9999999999999999999999999999997764 35789999999999965 455777889999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 028686          151 NLNVEQVFFSIARDIKQR  168 (205)
Q Consensus       151 ~~gi~~~~~~i~~~~~~~  168 (205)
                      |.|++++|+++.+.+.++
T Consensus       162 ~~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         162 GTNVEKAVERLLDLVMKR  179 (180)
T ss_pred             CCCHHHHHHHHHHHHHhh
Confidence            999999999999887653

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=5.5e-35  Score=212.18  Aligned_cols=162  Identities=33%  Similarity=0.710  Sum_probs=148.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      +||+++|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999998899999999998888889999999999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHhhcC-----CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHH
Q 028686           84 DVTDESSFNNIRNWIRNIEQHAS-----DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF  158 (205)
Q Consensus        84 d~~~~~s~~~~~~~~~~i~~~~~-----~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  158 (205)
                      |++++++|+.+..|+..+.....     .+.|+++|+||+|+.+ ...+..++...++...+++++++||+++.|++++|
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  159 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTK-HRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMF  159 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccc-ccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence            99999999999999999987653     4689999999999964 35567888888888888999999999999999999


Q ss_pred             HHHHHHHH
Q 028686          159 FSIARDIK  166 (205)
Q Consensus       159 ~~i~~~~~  166 (205)
                      ++|++.+.
T Consensus       160 ~~l~~~l~  167 (168)
T cd04119         160 QTLFSSIV  167 (168)
T ss_pred             HHHHHHHh
Confidence            99998764

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.7e-35  Score=201.45  Aligned_cols=168  Identities=51%  Similarity=0.912  Sum_probs=159.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      +|++++|++.+|||||+.++++..+...+.+|.|.++..+++.-..+.+++++|||+|+++|+.+..+++++++++|++|
T Consensus        22 fKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmy  101 (193)
T KOG0093|consen   22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMY  101 (193)
T ss_pred             eeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEE
Confidence            59999999999999999999999999999999999999998877778899999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHH
Q 028686           84 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR  163 (205)
Q Consensus        84 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~  163 (205)
                      |+++.+||..+..|...|..+.-.++|+|+|+||+|+.+ ++.+..+..+.++.++|..+||+||+.+.|++++|+.++.
T Consensus       102 DitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~-eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~  180 (193)
T KOG0093|consen  102 DITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDS-ERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLVD  180 (193)
T ss_pred             ecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCcc-ceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHHH
Confidence            999999999999999999988888999999999999965 6778899999999999999999999999999999999999


Q ss_pred             HHHHHhccc
Q 028686          164 DIKQRLADT  172 (205)
Q Consensus       164 ~~~~~~~~~  172 (205)
                      .+.+...+.
T Consensus       181 ~Ic~kmses  189 (193)
T KOG0093|consen  181 IICDKMSES  189 (193)
T ss_pred             HHHHHhhhh
Confidence            998876654

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=6.6e-35  Score=213.81  Aligned_cols=161  Identities=26%  Similarity=0.526  Sum_probs=142.5

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+++|++|+|||||+++|.++.+...+.||.+..+. ..+.+++..+.+.+||++|++++..++..+++++|++|+|
T Consensus         1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv   79 (175)
T cd01874           1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   79 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence            479999999999999999999999998889999986664 4567888889999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC-----------CCccCHHHHHHHHHHhC-CcEEEEcCC
Q 028686           83 YDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYG-IKFFETSAK  149 (205)
Q Consensus        83 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~Sa~  149 (205)
                      ||++++++|+.+. .|+..+.... +++|++||+||.|+.+.           ...+..++++.++++.+ +.|+++||+
T Consensus        80 ~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~  158 (175)
T cd01874          80 FSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL  158 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence            9999999999997 5988887654 57999999999998643           14577888899998887 799999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 028686          150 TNLNVEQVFFSIARDI  165 (205)
Q Consensus       150 ~~~gi~~~~~~i~~~~  165 (205)
                      +|.|++++|+.+++.+
T Consensus       159 tg~~v~~~f~~~~~~~  174 (175)
T cd01874         159 TQKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998864

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=1.1e-34  Score=219.76  Aligned_cols=164  Identities=28%  Similarity=0.540  Sum_probs=147.1

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   80 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   80 (205)
                      |..+||+++|++|||||||+++++.+.+...+.+|.+.++....+..++..+.+.+||++|++++..++..++++++++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            45689999999999999999999999998899999998888888888888899999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686           81 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  160 (205)
Q Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  160 (205)
                      +|||++++++|..+..|+..+.... +++|+++|+||+|+.+  ..+..+++ .++...+++|+++||++|.|++++|++
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~--~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~  166 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN--RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLY  166 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh--ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHH
Confidence            9999999999999999999998765 5799999999999953  33444555 677778899999999999999999999


Q ss_pred             HHHHHHHH
Q 028686          161 IARDIKQR  168 (205)
Q Consensus       161 i~~~~~~~  168 (205)
                      |.+.+.+.
T Consensus       167 l~~~~~~~  174 (219)
T PLN03071        167 LARKLAGD  174 (219)
T ss_pred             HHHHHHcC
Confidence            99988654

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=2.6e-34  Score=209.75  Aligned_cols=163  Identities=36%  Similarity=0.638  Sum_probs=145.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEe
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   84 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   84 (205)
                      ||+++|++|||||||+++|+++.+...+.||.+.++....+.+++..+.+.+||++|++++..++..+++++|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            79999999999999999999999999999999999888888888889999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCC-ccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           85 VTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKR-AVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        85 ~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ++++++|+.+..|++.+.+... ...|+++|+||+|+.+... ....+++..++.+++.+++++||++|.|++++|+.+.
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~  161 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA  161 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999999866543 4578999999999854322 3356677788888889999999999999999999999


Q ss_pred             HHHHH
Q 028686          163 RDIKQ  167 (205)
Q Consensus       163 ~~~~~  167 (205)
                      +.+.+
T Consensus       162 ~~~~~  166 (170)
T cd04108         162 ALTFE  166 (170)
T ss_pred             HHHHH
Confidence            88854

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=3.1e-34  Score=208.93  Aligned_cols=164  Identities=49%  Similarity=0.866  Sum_probs=150.4

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+++|.+|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++++..+...+++.+|++++|
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v   83 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV   83 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence            58999999999999999999999998888888888888888888898889999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||++++++|..+..|+..+.....+++|+++|+||.|+.+ ...+..+++..++...+++++++||+++.|++++|.++.
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~  162 (168)
T cd01866          84 YDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLES-RREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTA  162 (168)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999999999999887667899999999999964 455778888888888899999999999999999999999


Q ss_pred             HHHHH
Q 028686          163 RDIKQ  167 (205)
Q Consensus       163 ~~~~~  167 (205)
                      +.+.+
T Consensus       163 ~~~~~  167 (168)
T cd01866         163 KEIYE  167 (168)
T ss_pred             HHHHh
Confidence            88754

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=3.7e-34  Score=207.73  Aligned_cols=162  Identities=48%  Similarity=0.841  Sum_probs=148.4

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+++|++|||||||+++|.+..+...+.|+.+.++....+.+++..+.+.+||+||++.+..++..+++.++++++|
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   82 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   82 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence            57999999999999999999999998888889999888888899998889999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||++++++|..+..|+..+......++|+++|+||.|+.+ ...+..++...++...+++++++||++|.|++++|++++
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  161 (165)
T cd01868          83 YDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRH-LRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL  161 (165)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-cccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999999999887756799999999999965 355677888888888889999999999999999999998


Q ss_pred             HHH
Q 028686          163 RDI  165 (205)
Q Consensus       163 ~~~  165 (205)
                      ..+
T Consensus       162 ~~i  164 (165)
T cd01868         162 TEI  164 (165)
T ss_pred             HHh
Confidence            765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=1.7e-34  Score=208.97  Aligned_cols=160  Identities=41%  Similarity=0.696  Sum_probs=142.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      +||+++|++|||||||++++..+.+...+.+|.+ +.+...+.+++..+.+.+||+||++++..++..+++++|++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            6999999999999999999999998888888876 455677788888899999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           84 DVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        84 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      |++++++|+.+..|+..+..... .+.|+++|+||+|+.+ ...+..++...+++.++.+++++||+++.|++++|+++.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04136          81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLED-ERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV  159 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999999977643 5799999999999965 345667778888888889999999999999999999998


Q ss_pred             HHH
Q 028686          163 RDI  165 (205)
Q Consensus       163 ~~~  165 (205)
                      +.+
T Consensus       160 ~~~  162 (163)
T cd04136         160 RQI  162 (163)
T ss_pred             Hhc
Confidence            754

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=2.8e-34  Score=207.60  Aligned_cols=160  Identities=47%  Similarity=0.798  Sum_probs=148.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      +||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++++..++..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999999998888899998888888888888899999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHH
Q 028686           84 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR  163 (205)
Q Consensus        84 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~  163 (205)
                      |++++++|..+..|+..+.....+++|+++++||.|+.. ...+..+++..++...++.++++||+++.|++++|+++.+
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~  159 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLAD-QREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCAR  159 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcch-hccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            999999999999999999877767899999999999965 4567788889999999999999999999999999999987


Q ss_pred             H
Q 028686          164 D  164 (205)
Q Consensus       164 ~  164 (205)
                      .
T Consensus       160 ~  160 (161)
T cd04113         160 S  160 (161)
T ss_pred             h
Confidence            5

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.4e-34  Score=195.00  Aligned_cols=200  Identities=40%  Similarity=0.696  Sum_probs=175.8

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+|-+++|+-|+|||+|+++|...++-...+.|+|.++....+.+.++.+++++||++|+++|+.....+++.+.+.++|
T Consensus        11 ifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmv   90 (215)
T KOG0097|consen   11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   90 (215)
T ss_pred             eEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEE
Confidence            57889999999999999999999999889999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||++.++++.++..|+...+...+++..|++++||.||.. ++++..++++.|+.++|+.++++||++|.++++.|-...
T Consensus        91 yditrrstynhlsswl~dar~ltnpnt~i~lignkadle~-qrdv~yeeak~faeengl~fle~saktg~nvedafle~a  169 (215)
T KOG0097|consen   91 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLES-QRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETA  169 (215)
T ss_pred             EEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhh-cccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHH
Confidence            9999999999999999999999889999999999999954 788999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccCCCCCC-ccccccCCCCCC----CCCCCCCCCCCcC
Q 028686          163 RDIKQRLADTDSRSEP-STIKINQPDQAG----GVGQAAQKSACCG  203 (205)
Q Consensus       163 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~c~~  203 (205)
                      +.+.+..++..-..+. ++=-.++++.|+    .+....+|.+|.|
T Consensus       170 kkiyqniqdgsldlnaaesgvq~k~~~p~~~~l~se~~~~kd~c~c  215 (215)
T KOG0097|consen  170 KKIYQNIQDGSLDLNAAESGVQHKPSQPSRTSLSSEATGAKDQCSC  215 (215)
T ss_pred             HHHHHhhhcCcccccchhccCcCCCCCCCccccccCCCCccccCCC
Confidence            9998877665443222 221223444444    4455667778887

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=5.6e-34  Score=206.91  Aligned_cols=162  Identities=45%  Similarity=0.819  Sum_probs=146.5

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+++|++|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            35899999999999999999999999888888888888888888888888899999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC-cEEEEcCCCCCCHHHHHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVEQVFFS  160 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~  160 (205)
                      |||++++++|+.+..|+..+......++|+++|+||+|+.+ ...+..+++..+++..+. .++++||++|.|++++|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~  160 (165)
T cd01864          82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEE-QREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLL  160 (165)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc-ccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHH
Confidence            99999999999999999999876667899999999999965 445677888888888875 7899999999999999999


Q ss_pred             HHHH
Q 028686          161 IARD  164 (205)
Q Consensus       161 i~~~  164 (205)
                      +.+.
T Consensus       161 l~~~  164 (165)
T cd01864         161 MATE  164 (165)
T ss_pred             HHHh
Confidence            9865

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=6.9e-34  Score=206.76  Aligned_cols=160  Identities=30%  Similarity=0.630  Sum_probs=142.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      +||+++|++|||||||+++++.+.+...+.+|.+.++....+..++..+.+.+||++|++++..++..++..+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999999888888999998888887778888899999999999999998999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHH
Q 028686           84 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR  163 (205)
Q Consensus        84 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~  163 (205)
                      |++++++|..+..|+..+..... ++|+++|+||+|+.+  ..+. .+...++...+++++++||++|.|++++|++|.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~--~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~  156 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD--RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLAR  156 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc--ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHH
Confidence            99999999999999999988764 799999999999963  2233 3445666777789999999999999999999998


Q ss_pred             HHHH
Q 028686          164 DIKQ  167 (205)
Q Consensus       164 ~~~~  167 (205)
                      .+.+
T Consensus       157 ~~~~  160 (166)
T cd00877         157 KLLG  160 (166)
T ss_pred             HHHh
Confidence            8865

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=7.5e-34  Score=205.41  Aligned_cols=159  Identities=38%  Similarity=0.672  Sum_probs=144.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEEC--CEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD--GKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      +||+++|++|+|||||+++|.++.+...+.+|.+.++....+.+.  +..+.+.+||+||++++..++..+++++|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            589999999999999999999999888888999988877777776  778899999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  161 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i  161 (205)
                      |||++++++|+.+..|+..+.... .++|+++|+||.|+.. +..+..+++..+++..+++++++||+++.|++++|++|
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  158 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLD-QAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYL  158 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhccc-ccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            999999999999999999987655 5799999999999965 44567788889999999999999999999999999998


Q ss_pred             HHH
Q 028686          162 ARD  164 (205)
Q Consensus       162 ~~~  164 (205)
                      ...
T Consensus       159 ~~~  161 (162)
T cd04106         159 AEK  161 (162)
T ss_pred             HHh
Confidence            753

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=4.9e-34  Score=206.98  Aligned_cols=161  Identities=36%  Similarity=0.686  Sum_probs=142.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      +||+++|.+|||||||+++++.+.+...+.+|++..+ ...+.+++..+.+.+||+||++++..++..+++++|++++||
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY   80 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence            6899999999999999999999988877888887554 466778888899999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           84 DVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        84 d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      |++++++|+.+..|+..+.... ..+.|+++|+||+|+.+ ...+..+++..+++..+++++++||++|.|++++|.++.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~  159 (164)
T cd04175          81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED-ERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchh-ccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence            9999999999999999987654 36799999999999965 344666777888888889999999999999999999998


Q ss_pred             HHHH
Q 028686          163 RDIK  166 (205)
Q Consensus       163 ~~~~  166 (205)
                      +.+.
T Consensus       160 ~~l~  163 (164)
T cd04175         160 RQIN  163 (164)
T ss_pred             HHhh
Confidence            7653

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=1e-33  Score=206.43  Aligned_cols=161  Identities=42%  Similarity=0.700  Sum_probs=145.9

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++++..++..+++.+|++++
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   83 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL   83 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence            46899999999999999999999999988888999988888888889999999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC-CcEEEEcCCCCCCHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQ  156 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~  156 (205)
                      |||++++++|+.+..|...+.....    .++|+++|+||.|+.  ...+..+++++++..++ .+++++||++|.|+++
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  161 (170)
T cd04116          84 TFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP--ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAA  161 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc--ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHH
Confidence            9999999999999999998876542    468999999999985  45577888999998888 5899999999999999


Q ss_pred             HHHHHHHH
Q 028686          157 VFFSIARD  164 (205)
Q Consensus       157 ~~~~i~~~  164 (205)
                      +|+++++.
T Consensus       162 ~~~~~~~~  169 (170)
T cd04116         162 AFEEAVRR  169 (170)
T ss_pred             HHHHHHhh
Confidence            99999875

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=1.4e-33  Score=204.27  Aligned_cols=163  Identities=55%  Similarity=0.955  Sum_probs=149.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      +||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++++||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            68999999999999999999999988888899998888888888888889999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHH
Q 028686           84 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR  163 (205)
Q Consensus        84 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~  163 (205)
                      |++++++++.+.+|+..+..+..+++|+++++||.|+.. ...+..+++..+++..+++++++|++++.|++++|+++.+
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~  159 (164)
T smart00175       81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLED-QRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhccc-ccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            999999999999999999887767899999999999864 3456778888888888999999999999999999999998


Q ss_pred             HHHH
Q 028686          164 DIKQ  167 (205)
Q Consensus       164 ~~~~  167 (205)
                      .+.+
T Consensus       160 ~~~~  163 (164)
T smart00175      160 EILK  163 (164)
T ss_pred             HHhh
Confidence            8754

Rab GTPases are implicated in vesicle trafficking.

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=6.4e-34  Score=208.40  Aligned_cols=160  Identities=31%  Similarity=0.594  Sum_probs=140.9

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+++|++|||||||+.+++.+.+...+.||.+ +.+...+.+++..+.+.+|||+|++.+..++..+++++|++|+|
T Consensus         1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (174)
T cd01871           1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC   79 (174)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEE
Confidence            37999999999999999999999999888888886 44455667888899999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCC-----------CccCHHHHHHHHHHhC-CcEEEEcCC
Q 028686           83 YDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYG-IKFFETSAK  149 (205)
Q Consensus        83 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~~Sa~  149 (205)
                      ||+++++||.++. .|+..+.... +++|+++|+||.|+.+..           ..+..+++.++++.++ ++++++||+
T Consensus        80 ~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  158 (174)
T cd01871          80 FSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  158 (174)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence            9999999999996 5888887654 579999999999996421           2477889999999998 499999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 028686          150 TNLNVEQVFFSIARD  164 (205)
Q Consensus       150 ~~~gi~~~~~~i~~~  164 (205)
                      +|.|++++|+.+++.
T Consensus       159 ~~~~i~~~f~~l~~~  173 (174)
T cd01871         159 TQKGLKTVFDEAIRA  173 (174)
T ss_pred             ccCCHHHHHHHHHHh
Confidence            999999999999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=6.6e-34  Score=211.02  Aligned_cols=162  Identities=31%  Similarity=0.531  Sum_probs=141.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      .||+++|++|||||||+++|.++.+...+.||.+..+. ..+.+++..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~   79 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF   79 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence            37999999999999999999999998888888876654 45667888899999999999999999999999999999999


Q ss_pred             eCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCCC-----------ccCHHHHHHHHHHhC-CcEEEEcCCC
Q 028686           84 DVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKR-----------AVPTSKGQALADEYG-IKFFETSAKT  150 (205)
Q Consensus        84 d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~-----------~~~~~~~~~~~~~~~-~~~~~~Sa~~  150 (205)
                      |+++++||+.+. .|+..+.... ++.|+++|+||+|+.+...           .+..++...++...+ ++|+++||++
T Consensus        80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  158 (189)
T cd04134          80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL  158 (189)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence            999999999986 5999888654 5799999999999965321           345677788888777 7899999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 028686          151 NLNVEQVFFSIARDIKQ  167 (205)
Q Consensus       151 ~~gi~~~~~~i~~~~~~  167 (205)
                      |.|++++|.++++.+..
T Consensus       159 ~~~v~e~f~~l~~~~~~  175 (189)
T cd04134         159 NRGVNEAFTEAARVALN  175 (189)
T ss_pred             CCCHHHHHHHHHHHHhc
Confidence            99999999999998874

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=1.9e-33  Score=203.47  Aligned_cols=160  Identities=29%  Similarity=0.495  Sum_probs=141.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      +||+++|++|||||||+++|.++.+.+.+.++.+.+++.....+++..+.+.+|||+|++++..++..+++++|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999998888888887777777888888999999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHH
Q 028686           84 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR  163 (205)
Q Consensus        84 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~  163 (205)
                      |++++.++.++..|+..+.... ++.|+++|+||.|+...    ..++...++...+++++++||++|.|++++|+.+++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  155 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS----VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIK  155 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh----HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            9999999999999999997654 56999999999998431    234455667777899999999999999999999998


Q ss_pred             HHHHH
Q 028686          164 DIKQR  168 (205)
Q Consensus       164 ~~~~~  168 (205)
                      .+.++
T Consensus       156 ~~~~~  160 (161)
T cd04124         156 LAVSY  160 (161)
T ss_pred             HHHhc
Confidence            88764

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=5.8e-33  Score=209.37  Aligned_cols=165  Identities=47%  Similarity=0.757  Sum_probs=144.1

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+|+|++|||||||+++|.++.+ ..+.++.+.++....+.+++..+.+.+|||||++++..++..+++.+|++++|
T Consensus        14 ~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv   92 (211)
T PLN03118         14 SFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILV   92 (211)
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            58999999999999999999999877 45678888888878888888889999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHH-HHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686           83 YDVTDESSFNNIRN-WIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  160 (205)
Q Consensus        83 ~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  160 (205)
                      ||++++++|+++.. |...+.... ..+.|+++|+||+|+.. ...+..++...++...+++++++||+++.|++++|++
T Consensus        93 ~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~-~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~  171 (211)
T PLN03118         93 YDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES-ERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEE  171 (211)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999976 666665443 24689999999999965 3456678888888888999999999999999999999


Q ss_pred             HHHHHHHHh
Q 028686          161 IARDIKQRL  169 (205)
Q Consensus       161 i~~~~~~~~  169 (205)
                      |.+.+....
T Consensus       172 l~~~~~~~~  180 (211)
T PLN03118        172 LALKIMEVP  180 (211)
T ss_pred             HHHHHHhhh
Confidence            999997653

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=2.5e-33  Score=202.36  Aligned_cols=160  Identities=36%  Similarity=0.625  Sum_probs=141.6

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+++|++|||||||+++|+++.+...+.||.+..+ ...+.+++..+.+.+||++|++++..++..++++++++++|
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v   79 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   79 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence            36999999999999999999999998888888877444 56677888888899999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  161 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i  161 (205)
                      ||++++++|+++..|+..+.+... .+.|+++|+||+|+.+  ..+..+++..+++..+++++++||++|.|++++|+++
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  157 (162)
T cd04138          80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTL  157 (162)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc--ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHH
Confidence            999999999999999999887653 5799999999999864  4566778888888889999999999999999999999


Q ss_pred             HHHH
Q 028686          162 ARDI  165 (205)
Q Consensus       162 ~~~~  165 (205)
                      ++.+
T Consensus       158 ~~~~  161 (162)
T cd04138         158 VREI  161 (162)
T ss_pred             HHHh
Confidence            8754

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=1.6e-33  Score=203.96  Aligned_cols=161  Identities=35%  Similarity=0.628  Sum_probs=142.1

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+++|.+|+|||||+++++.+.+...+.+|.+ +++...+.+++..+.+.+||++|++++..++..+++++|++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   79 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence            37999999999999999999999998888878775 56667778888888999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  161 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i  161 (205)
                      ||++++++|.++..|+..+..... .++|+++|+||+|+.+ ...+..++...++...+++++++||+++.|++++|.++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  158 (163)
T cd04176          80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLES-EREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEI  158 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh-cCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHH
Confidence            999999999999999999877543 5799999999999864 44566677788888888999999999999999999999


Q ss_pred             HHHH
Q 028686          162 ARDI  165 (205)
Q Consensus       162 ~~~~  165 (205)
                      .+.+
T Consensus       159 ~~~l  162 (163)
T cd04176         159 VRQM  162 (163)
T ss_pred             HHhc
Confidence            8654

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.1e-34  Score=199.94  Aligned_cols=169  Identities=34%  Similarity=0.685  Sum_probs=159.2

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..|||+++|..=+|||||+-+++.++|.....+|....|..+.+.+.+....+.||||+|+++|..+-+.|++.++++++
T Consensus        12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalL   91 (218)
T KOG0088|consen   12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALL   91 (218)
T ss_pred             eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEE
Confidence            46899999999999999999999999999888998888888999999999999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  161 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i  161 (205)
                      |||+++++||..+..|..+++...+..+-++||+||+||.+ ++.+..+++..++...|+.|+++||+++.||.++|+.+
T Consensus        92 VyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEe-eR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~L  170 (218)
T KOG0088|consen   92 VYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEE-ERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESL  170 (218)
T ss_pred             EEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHH-hhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHH
Confidence            99999999999999999999999988899999999999965 78899999999999999999999999999999999999


Q ss_pred             HHHHHHHhcc
Q 028686          162 ARDIKQRLAD  171 (205)
Q Consensus       162 ~~~~~~~~~~  171 (205)
                      .....++...
T Consensus       171 t~~MiE~~s~  180 (218)
T KOG0088|consen  171 TAKMIEHSSQ  180 (218)
T ss_pred             HHHHHHHhhh
Confidence            8888777643

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=1.9e-33  Score=203.76  Aligned_cols=161  Identities=41%  Similarity=0.700  Sum_probs=141.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      +||+++|++|||||||+++|++..+...+.++.+ +.+...+.+++..+.+.+||+||++++..++..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            4899999999999999999999998877777776 444566778888899999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           84 DVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        84 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      |++++++|+.+..|+..+.+... .+.|+++|+||+|+.+ ...+..+++..+++..+++++++||+++.|++++|++++
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  158 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES-ERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLV  158 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHH
Confidence            99999999999999988876543 5789999999999965 345667788888888889999999999999999999999


Q ss_pred             HHHH
Q 028686          163 RDIK  166 (205)
Q Consensus       163 ~~~~  166 (205)
                      +.+.
T Consensus       159 ~~~~  162 (164)
T smart00173      159 REIR  162 (164)
T ss_pred             HHHh
Confidence            8765

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=2.7e-33  Score=203.42  Aligned_cols=159  Identities=35%  Similarity=0.523  Sum_probs=139.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      +||+++|++|||||||+++++++.+...+.|+.+..+ ...+..++..+.+.+||++|++++..++..+++.++++++||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            6899999999999999999999998888888876444 455666778889999999999999998899999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686           84 DVTDESSFNNIRNWIRNIEQHAS---DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  160 (205)
Q Consensus        84 d~~~~~s~~~~~~~~~~i~~~~~---~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  160 (205)
                      |++++++|+.+..|+..+.....   +++|+++|+||+|+.+ ...+..+++..++...+++++++||++|.|++++|++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~  159 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH-KREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQE  159 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc-cCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Confidence            99999999999999988876532   5799999999999965 3456777888888888899999999999999999999


Q ss_pred             HHHH
Q 028686          161 IARD  164 (205)
Q Consensus       161 i~~~  164 (205)
                      |+..
T Consensus       160 l~~~  163 (165)
T cd04140         160 LLNL  163 (165)
T ss_pred             HHhc
Confidence            9753

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=3.8e-33  Score=201.50  Aligned_cols=160  Identities=40%  Similarity=0.703  Sum_probs=146.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      .||+++|++|||||||+++|.+.++...+.++.+.++....+.+++..+.+.+||+||+..+..++..+++.+|++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999999998888999999999999999888889999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHH
Q 028686           84 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR  163 (205)
Q Consensus        84 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~  163 (205)
                      |++++++|+.+..|+..+......+.|+++++||+|+.+ ......++...+++..+++++++||+++.|++++|+++.+
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~  159 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSD-KRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIAS  159 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccc-cCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            999999999999999998776555799999999999954 4556778888888888899999999999999999999976


Q ss_pred             H
Q 028686          164 D  164 (205)
Q Consensus       164 ~  164 (205)
                      .
T Consensus       160 ~  160 (161)
T cd01861         160 A  160 (161)
T ss_pred             h
Confidence            4

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=3.3e-33  Score=208.31  Aligned_cols=156  Identities=29%  Similarity=0.614  Sum_probs=141.1

Q ss_pred             ECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCCh
Q 028686            9 FERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE   88 (205)
Q Consensus         9 ~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   88 (205)
                      +|++|||||||+++|+.+.+...+.+|.+.++....+.++++.+.+.+||++|++++..++..+++++|++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999998888899999999888888999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 028686           89 SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR  168 (205)
Q Consensus        89 ~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~  168 (205)
                      +||..+..|++.+.+.. +++|+++|+||+|+..  ..+..+. ..+++..++.|+++||++|.||+++|.++++.+.+.
T Consensus        81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~--~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~  156 (200)
T smart00176       81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD--RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD  156 (200)
T ss_pred             HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc--ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            99999999999998765 5799999999999853  3344444 467788889999999999999999999999998664

Ran is involved in the active transport of proteins through nuclear pores.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=6.4e-33  Score=202.40  Aligned_cols=162  Identities=46%  Similarity=0.822  Sum_probs=146.3

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh-hhhhhhccCCcEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-TITTAYYRGAMGILL   81 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~d~~i~   81 (205)
                      .+||+++|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+||++|+++++ .++..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            5899999999999999999999999888888999988888888999999999999999999886 578889999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCC---CCCHHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT---NLNVEQV  157 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~gi~~~  157 (205)
                      |||++++++|..+..|++.+.... ..++|+++|+||+|+.. ...+..+++..++...+++|+++||++   +.+++++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~  160 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLRE-QIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAI  160 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchh-hcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHH
Confidence            999999999999999999998764 35799999999999865 455677888889988889999999999   8899999


Q ss_pred             HHHHHHHH
Q 028686          158 FFSIARDI  165 (205)
Q Consensus       158 ~~~i~~~~  165 (205)
                      |..+.+.+
T Consensus       161 f~~l~~~~  168 (170)
T cd04115         161 FMTLAHKL  168 (170)
T ss_pred             HHHHHHHh
Confidence            99998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=9.2e-33  Score=199.90  Aligned_cols=162  Identities=44%  Similarity=0.777  Sum_probs=147.8

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+++|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+||+||++++...+..+++++|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            37999999999999999999999998887888888888888889999999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||++++++|+.+..|++.+.....+++|+++++||+|+.. ......++...++...+++++++||++|.|++++|++++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLES-KRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIA  159 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-cCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999999999887667799999999999864 355677788888888889999999999999999999999


Q ss_pred             HHH
Q 028686          163 RDI  165 (205)
Q Consensus       163 ~~~  165 (205)
                      +.+
T Consensus       160 ~~l  162 (163)
T cd01860         160 KKL  162 (163)
T ss_pred             HHh
Confidence            875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=8.1e-33  Score=200.45  Aligned_cols=160  Identities=32%  Similarity=0.590  Sum_probs=141.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC--CCCCCcccceeeEEEEEEEEEC-CEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG--SFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   80 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~--~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   80 (205)
                      +||+++|++|||||||+++|..+  .+...+.+|.+.++....+.++ +..+.+.+||++|++.+..++..+++++|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999865  5778889999988887777665 57799999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686           81 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  160 (205)
Q Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  160 (205)
                      +|||++++++|+.+..|++.+.... .+.|+++|+||+|+.+ ...+..++.+.+...++++++++||+++.|++++|++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  158 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLAD-KAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFES  158 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHH
Confidence            9999999999999999999988765 5699999999999965 3456666777777888899999999999999999999


Q ss_pred             HHHHH
Q 028686          161 IARDI  165 (205)
Q Consensus       161 i~~~~  165 (205)
                      +.+.+
T Consensus       159 l~~~~  163 (164)
T cd04101         159 LARAF  163 (164)
T ss_pred             HHHHh
Confidence            98875

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=7.8e-33  Score=200.38  Aligned_cols=161  Identities=39%  Similarity=0.609  Sum_probs=141.5

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+++|++|+|||||++++++..+...+.++.+..+ .....+++..+.+.+||+||++++..++..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            58999999999999999999999988777778776443 45567888889999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  161 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i  161 (205)
                      ||++++++|+.+..|+..+.+.. ..++|+++++||+|+.. ...+..+++..+++..+++++++||++|.|++++|+++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  159 (164)
T cd04145          81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEH-QRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL  159 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccc-cceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence            99999999999999999987753 35799999999999965 34466777888888888999999999999999999999


Q ss_pred             HHHH
Q 028686          162 ARDI  165 (205)
Q Consensus       162 ~~~~  165 (205)
                      ++.+
T Consensus       160 ~~~~  163 (164)
T cd04145         160 VRVI  163 (164)
T ss_pred             HHhh
Confidence            8764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd01873 RhoBTB RhoBTB subfamily

Probab=100.00  E-value=4.2e-33  Score=207.21  Aligned_cols=159  Identities=26%  Similarity=0.440  Sum_probs=132.5

Q ss_pred             ceEEEEECCCCCcHHHHHH-HHHhCC-----CCCCcccceee-EEEEEE--------EEECCEEEEEEEEeCCChhhhhh
Q 028686            3 FLLRIYFERGGVGKSCLLL-RFSDGS-----FTTSFITTIGI-DFKIRT--------IELDGKRIKLQIWDTAGQERFRT   67 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~-~l~~~~-----~~~~~~~t~~~-~~~~~~--------~~~~~~~~~~~i~D~~g~~~~~~   67 (205)
                      .+||+++|++|||||||+. ++.+..     +...+.||++. +.+...        +.+++..+.+.+|||+|+++  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            5899999999999999995 565443     45667888863 333222        25788899999999999975  3


Q ss_pred             hhhhhccCCcEEEEEEeCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------------CCccC
Q 028686           68 ITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDES------------------KRAVP  128 (205)
Q Consensus        68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~------------------~~~~~  128 (205)
                      +...+++++|++|+|||+++++||+++. .|++.+.... +++|+++|+||+||.+.                  ...+.
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~  158 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP  158 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence            4566889999999999999999999997 5999887765 57999999999999642                  36788


Q ss_pred             HHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHHH
Q 028686          129 TSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARD  164 (205)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~  164 (205)
                      .++++.++++++++|+|+||++|.||+++|+.++++
T Consensus       159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            999999999999999999999999999999999864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=6.7e-33  Score=206.76  Aligned_cols=167  Identities=23%  Similarity=0.325  Sum_probs=139.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh--------hhhhhhccC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR--------TITTAYYRG   75 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~~~   75 (205)
                      +||+|+|++|||||||+++|.++.+...+.||.+.+++...+.++++.+.+.+|||||...+.        ......++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            589999999999999999999999988888988877777777888988999999999965432        113345789


Q ss_pred             CcEEEEEEeCCChhHHHHHHHHHHHHHhhc---CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-HhCCcEEEEcCCCC
Q 028686           76 AMGILLVYDVTDESSFNNIRNWIRNIEQHA---SDNVNKVLVGNKADMDESKRAVPTSKGQALAD-EYGIKFFETSAKTN  151 (205)
Q Consensus        76 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~  151 (205)
                      +|++|+|||+++++||+.+..|++.+....   ..++|+++|+||+|+.+ ...+..++++.++. ..+++|+++||++|
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~e~Sak~g  159 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR-HRFAPRHVLSVLVRKSWKCGYLECSAKYN  159 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc-cccccHHHHHHHHHHhcCCcEEEecCCCC
Confidence            999999999999999999999999987764   36799999999999965 34456667777754 56799999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhcc
Q 028686          152 LNVEQVFFSIARDIKQRLAD  171 (205)
Q Consensus       152 ~gi~~~~~~i~~~~~~~~~~  171 (205)
                      .|++++|+.+++.+..+-+.
T Consensus       160 ~~v~~lf~~i~~~~~~~~~~  179 (198)
T cd04142         160 WHILLLFKELLISATTRGRS  179 (198)
T ss_pred             CCHHHHHHHHHHHhhccCCC
Confidence            99999999999888765443

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd01862 Rab7 Rab7 subfamily

Probab=100.00  E-value=3.5e-32  Score=198.43  Aligned_cols=165  Identities=44%  Similarity=0.714  Sum_probs=147.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      +||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++++|++|+||
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988888888888888888889998899999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC-CcEEEEcCCCCCCHHHHH
Q 028686           84 DVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF  158 (205)
Q Consensus        84 d~~~~~s~~~~~~~~~~i~~~~~----~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~  158 (205)
                      |++++++++++..|.+.+.....    .++|+++|+||.|+.+ ......++...++...+ .+++++|+++|.|++++|
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  159 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE-KRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAF  159 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc-ccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHH
Confidence            99999999999999888765542    3699999999999964 34456788888888887 799999999999999999


Q ss_pred             HHHHHHHHHHh
Q 028686          159 FSIARDIKQRL  169 (205)
Q Consensus       159 ~~i~~~~~~~~  169 (205)
                      +++.+.+.+..
T Consensus       160 ~~i~~~~~~~~  170 (172)
T cd01862         160 ETIARKALEQE  170 (172)
T ss_pred             HHHHHHHHhcc
Confidence            99999887763

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.1e-34  Score=198.68  Aligned_cols=169  Identities=46%  Similarity=0.841  Sum_probs=154.6

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEEC---------CEEEEEEEEeCCChhhhhhhhhhhc
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD---------GKRIKLQIWDTAGQERFRTITTAYY   73 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~---------~~~~~~~i~D~~g~~~~~~~~~~~~   73 (205)
                      .|+.+.+|++|+|||+++.++..++|.....+|.|+++..+.+-++         +..+.+++|||+|+++|+++..+++
T Consensus         9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFf   88 (219)
T KOG0081|consen    9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFF   88 (219)
T ss_pred             HHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHH
Confidence            4678899999999999999999999999999999999998877652         3578999999999999999999999


Q ss_pred             cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCC
Q 028686           74 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL  152 (205)
Q Consensus        74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  152 (205)
                      ++|-+++++||+++.+||.+++.|+..+.-+.. .+.-|++++||+||.+ .+.+..+++..++.++++||||+||-+|.
T Consensus        89 RDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~-~R~Vs~~qa~~La~kyglPYfETSA~tg~  167 (219)
T KOG0081|consen   89 RDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLED-QRVVSEDQAAALADKYGLPYFETSACTGT  167 (219)
T ss_pred             HhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhh-hhhhhHHHHHHHHHHhCCCeeeeccccCc
Confidence            999999999999999999999999999987764 6678899999999976 78899999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhccc
Q 028686          153 NVEQVFFSIARDIKQRLADT  172 (205)
Q Consensus       153 gi~~~~~~i~~~~~~~~~~~  172 (205)
                      +|++..+.++..+.++.+.-
T Consensus       168 Nv~kave~LldlvM~Rie~~  187 (219)
T KOG0081|consen  168 NVEKAVELLLDLVMKRIEQC  187 (219)
T ss_pred             CHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988776543

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=100.00  E-value=1.9e-32  Score=200.39  Aligned_cols=159  Identities=32%  Similarity=0.564  Sum_probs=139.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      +|++++|++|+|||||++++.++.+...+.+|. .+.+...+.+++..+.+.+||+||++++..++..+++++|++++||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            689999999999999999999999888888876 4555667788888899999999999999999999999999999999


Q ss_pred             eCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC-----------CCccCHHHHHHHHHHhCC-cEEEEcCCC
Q 028686           84 DVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETSAKT  150 (205)
Q Consensus        84 d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  150 (205)
                      |++++++|+++. .|+..+.... ++.|+++++||.|+...           ...+..+++..++...+. +++++||++
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~  158 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT  158 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence            999999999985 6888887543 56999999999998642           356778889999999887 899999999


Q ss_pred             CCCHHHHHHHHHHH
Q 028686          151 NLNVEQVFFSIARD  164 (205)
Q Consensus       151 ~~gi~~~~~~i~~~  164 (205)
                      |.|++++|+.++.+
T Consensus       159 ~~~v~~lf~~~~~~  172 (173)
T cd04130         159 QKNLKEVFDTAILA  172 (173)
T ss_pred             CCCHHHHHHHHHhh
Confidence            99999999998753

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04103 Centaurin_gamma Centaurin gamma

Probab=100.00  E-value=1.3e-32  Score=198.38  Aligned_cols=154  Identities=24%  Similarity=0.394  Sum_probs=131.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      +||+++|++|||||||+.+++.+.+...+.|+ +..+ ...+.+++..+.+.+||++|++.     ..+++.+|++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            58999999999999999999999887766555 3344 46788899899999999999975     34667899999999


Q ss_pred             eCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCC-CCCccCHHHHHHHHHHh-CCcEEEEcCCCCCCHHHHHHH
Q 028686           84 DVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDE-SKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEQVFFS  160 (205)
Q Consensus        84 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~-~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~~~~~  160 (205)
                      |+++++||+++..|++.+..... +++|+++|+||.|+.. ....+..++++.++++. ++.|+++||++|.||+++|..
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~  153 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE  153 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence            99999999999999999987754 6799999999999853 24667888888898876 489999999999999999999


Q ss_pred             HHHH
Q 028686          161 IARD  164 (205)
Q Consensus       161 i~~~  164 (205)
                      +.+.
T Consensus       154 ~~~~  157 (158)
T cd04103         154 AAQK  157 (158)
T ss_pred             HHhh
Confidence            9864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04143 Rhes_like Rhes_like subfamily

Probab=100.00  E-value=2.5e-32  Score=209.68  Aligned_cols=177  Identities=25%  Similarity=0.366  Sum_probs=148.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      +||+++|++|||||||+++|+++.+...+.+|++ ++..+.+.+++..+.+.||||+|++.+..++..++..+|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999999888888886 666777888999999999999999999888888899999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHhh---------cCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHH-hCCcEEEEcCCCCCC
Q 028686           84 DVTDESSFNNIRNWIRNIEQH---------ASDNVNKVLVGNKADMDESKRAVPTSKGQALADE-YGIKFFETSAKTNLN  153 (205)
Q Consensus        84 d~~~~~s~~~~~~~~~~i~~~---------~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~g  153 (205)
                      |+++++||+++..|++.+...         ...++|+++|+||+|+.. ...+..+++..++.. .++.++++||+++.|
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~-~~~v~~~ei~~~~~~~~~~~~~evSAktg~g  158 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF-PREVQRDEVEQLVGGDENCAYFEVSAKKNSN  158 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh-ccccCHHHHHHHHHhcCCCEEEEEeCCCCCC
Confidence            999999999999999998654         225799999999999964 345677777777653 357899999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCCCcccccc
Q 028686          154 VEQVFFSIARDIKQRLADTDSRSEPSTIKIN  184 (205)
Q Consensus       154 i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  184 (205)
                      ++++|++|.+.+.-..  ....+..++++++
T Consensus       159 I~elf~~L~~~~~~p~--e~~~~~~~~~~~~  187 (247)
T cd04143         159 LDEMFRALFSLAKLPN--EMSPSLHRKISVQ  187 (247)
T ss_pred             HHHHHHHHHHHhcccc--ccCccccceeeee
Confidence            9999999998653222  2334555566554

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04123 Rab21 Rab21 subfamily

Probab=100.00  E-value=4.7e-32  Score=195.65  Aligned_cols=161  Identities=40%  Similarity=0.757  Sum_probs=144.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      +||+++|++|+|||||+++|+++.+...+.++.+.++....+.+.+..+.+.+||++|++.+..++..+++++|++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999999999887777777777777777778888889999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHH
Q 028686           84 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR  163 (205)
Q Consensus        84 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~  163 (205)
                      |++++++++.+..|++.+......++|+++++||+|+.. ...+..+++.+++...+.+++++|++++.|++++|+++.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~  159 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLER-QRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAK  159 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            999999999999999999887766799999999999864 4556677888888888999999999999999999999987


Q ss_pred             HH
Q 028686          164 DI  165 (205)
Q Consensus       164 ~~  165 (205)
                      .+
T Consensus       160 ~~  161 (162)
T cd04123         160 RM  161 (162)
T ss_pred             Hh
Confidence            65

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=100.00  E-value=1.8e-32  Score=200.49  Aligned_cols=159  Identities=31%  Similarity=0.607  Sum_probs=139.6

Q ss_pred             EEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDV   85 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   85 (205)
                      |+|+|++|||||||+++|.++.+...+.++....+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++|+|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            58999999999999999999999888888876444 45667888889999999999999999999999999999999999


Q ss_pred             CChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC-----------CCccCHHHHHHHHHHhCC-cEEEEcCCCCC
Q 028686           86 TDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETSAKTNL  152 (205)
Q Consensus        86 ~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  152 (205)
                      ++++||+.+. .|+..+.... ++.|+++|+||+|+...           ...+..+++..+++..+. +++++||+++.
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  158 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE  158 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            9999999996 5999887765 57999999999998642           123677888899999986 99999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 028686          153 NVEQVFFSIARDIK  166 (205)
Q Consensus       153 gi~~~~~~i~~~~~  166 (205)
                      |++++|+.+++.+.
T Consensus       159 ~v~~lf~~l~~~~~  172 (174)
T smart00174      159 GVREVFEEAIRAAL  172 (174)
T ss_pred             CHHHHHHHHHHHhc
Confidence            99999999998874

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd01863 Rab18 Rab18 subfamily

Probab=100.00  E-value=5.7e-32  Score=195.43  Aligned_cols=159  Identities=47%  Similarity=0.846  Sum_probs=144.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      +||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999887778888888888777888888899999999999999998999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           84 DVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        84 d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      |++++++|+.+..|++.+..+. ..+.|+++|+||+|+..  .....++...++...+++++++||++|.|++++++.++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~  158 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN--REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELV  158 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc--cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence            9999999999999999998775 36799999999999963  45667888888888899999999999999999999998


Q ss_pred             HH
Q 028686          163 RD  164 (205)
Q Consensus       163 ~~  164 (205)
                      +.
T Consensus       159 ~~  160 (161)
T cd01863         159 EK  160 (161)
T ss_pred             Hh
Confidence            75

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04135 Tc10 TC10 subfamily

Probab=100.00  E-value=4.7e-32  Score=198.32  Aligned_cols=160  Identities=29%  Similarity=0.547  Sum_probs=139.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      +||+++|++|+|||||+++|.++.+...+.++.+ +.+...+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            5899999999999999999999998877778775 344456778888899999999999999999999999999999999


Q ss_pred             eCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCC-----------CccCHHHHHHHHHHhCC-cEEEEcCCC
Q 028686           84 DVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETSAKT  150 (205)
Q Consensus        84 d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  150 (205)
                      |++++++|+.+. .|.+.+... .++.|+++|+||+|+.+..           ..+..+++..+++..+. +++++||++
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  158 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT  158 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence            999999999986 588888765 4679999999999986432           25677888899988885 799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028686          151 NLNVEQVFFSIARDI  165 (205)
Q Consensus       151 ~~gi~~~~~~i~~~~  165 (205)
                      |.|++++|+.+++++
T Consensus       159 ~~gi~~~f~~~~~~~  173 (174)
T cd04135         159 QKGLKTVFDEAILAI  173 (174)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999999875

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04177 RSR1 RSR1 subgroup

Probab=100.00  E-value=1.1e-31  Score=195.49  Aligned_cols=161  Identities=39%  Similarity=0.655  Sum_probs=141.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      +||+++|++|||||||+++|.++.+...+.++.+.. +...+.+++..+.+.+||+||++++..++..+++.++++++||
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            689999999999999999999999888888887744 4567778888899999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC-CcEEEEcCCCCCCHHHHHHHH
Q 028686           84 DVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSI  161 (205)
Q Consensus        84 d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~~~i  161 (205)
                      |++++++++.+..|...+.+.. ..+.|+++++||.|+.+ ...+..++...+++..+ ++++++||+++.|++++|+++
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i  159 (168)
T cd04177          81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLED-DRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL  159 (168)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccc-cCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence            9999999999999999887644 35799999999999965 34566777778888877 899999999999999999999


Q ss_pred             HHHHH
Q 028686          162 ARDIK  166 (205)
Q Consensus       162 ~~~~~  166 (205)
                      ...+.
T Consensus       160 ~~~~~  164 (168)
T cd04177         160 VRQII  164 (168)
T ss_pred             HHHHh
Confidence            87654

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04148 RGK RGK subfamily

Probab=100.00  E-value=1.2e-31  Score=203.25  Aligned_cols=165  Identities=29%  Similarity=0.416  Sum_probs=141.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhcc-CCcEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR-GAMGILL   81 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-~~d~~i~   81 (205)
                      +||+++|++|+|||||+++|..+.+. ..+.++.+.+++...+.+++..+.+.+||++|++.  .....++. ++|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence            58999999999999999999988876 66777776678888888888889999999999983  23344566 8999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  160 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  160 (205)
                      |||++++++|+.+..|+..+..... .++|+++|+||+|+.+ ...+..++...++..++++++++||+++.|++++|++
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~-~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~  157 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLAR-SREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEG  157 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccc-cceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence            9999999999999999999877642 5799999999999965 4567778888888888999999999999999999999


Q ss_pred             HHHHHHHHhcc
Q 028686          161 IARDIKQRLAD  171 (205)
Q Consensus       161 i~~~~~~~~~~  171 (205)
                      +++.+......
T Consensus       158 l~~~~~~~~~~  168 (221)
T cd04148         158 IVRQIRLRRDS  168 (221)
T ss_pred             HHHHHHhhhcc
Confidence            99998754443

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd00154 Rab Rab family

Probab=100.00  E-value=2e-31  Score=191.20  Aligned_cols=159  Identities=53%  Similarity=0.931  Sum_probs=145.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      +||+++|++|||||||+++|.+..+...+.+|.+.++....+..++..+.+.+||+||+..+..++..+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999998888899999999888888888899999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHH
Q 028686           84 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR  163 (205)
Q Consensus        84 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~  163 (205)
                      |++++++++.+..|+..+......+.|+++++||+|+.. ......+++..++...+++++++||+++.|++++|++|.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~  159 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLED-QRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLAE  159 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccc-cccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHhC
Confidence            999999999999999999887756799999999999963 3556778888898888899999999999999999999863

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd01892 Miro2 Miro2 subfamily

Probab=100.00  E-value=6.3e-32  Score=197.01  Aligned_cols=161  Identities=22%  Similarity=0.295  Sum_probs=140.0

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      .+||+++|++|||||||+++|+++.+. ..+.||.+.++....+.+++..+.+.+||++|++.+..++..+++++|++++
T Consensus         4 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ll   83 (169)
T cd01892           4 VFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVACL   83 (169)
T ss_pred             EEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEEE
Confidence            489999999999999999999999998 8889999888877778888888899999999999998889999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC-cEEEEcCCCCCCHHHHHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVEQVFFS  160 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~  160 (205)
                      |||++++++|+.+..|+..+...  .++|+++|+||.|+.+. ..+...+..++++.++. .++++||+++.|++++|+.
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~  160 (169)
T cd01892          84 VYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQ-QQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTK  160 (169)
T ss_pred             EEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEccccccc-ccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHH
Confidence            99999999999998888876432  36999999999999642 33334556777788876 4799999999999999999


Q ss_pred             HHHHHH
Q 028686          161 IARDIK  166 (205)
Q Consensus       161 i~~~~~  166 (205)
                      +.+.+.
T Consensus       161 l~~~~~  166 (169)
T cd01892         161 LATAAQ  166 (169)
T ss_pred             HHHHhh
Confidence            998875

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=100.00  E-value=8.7e-32  Score=195.39  Aligned_cols=160  Identities=35%  Similarity=0.536  Sum_probs=136.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh-hhhhhhhhccCCcEEEEEE
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~d~~i~v~   83 (205)
                      ||+++|++|||||||+++++.+.+...+.++.+..+ ...+.+++..+.+.+||+||++. .......+++.+|++++||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            689999999999999999999888777777765343 45667888889999999999985 3445677889999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCC-CCHHHHHHH
Q 028686           84 DVTDESSFNNIRNWIRNIEQHA--SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN-LNVEQVFFS  160 (205)
Q Consensus        84 d~~~~~s~~~~~~~~~~i~~~~--~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~gi~~~~~~  160 (205)
                      |+++++||+.+..|+..+....  ..++|+++|+||+|+.+ ...+..+++..+++..+.+|+++||+++ .|++++|+.
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~  158 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLH-YRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHE  158 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHH-hCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHH
Confidence            9999999999999999887754  35799999999999864 3556778888999988999999999999 499999999


Q ss_pred             HHHHHH
Q 028686          161 IARDIK  166 (205)
Q Consensus       161 i~~~~~  166 (205)
                      +.+.+.
T Consensus       159 l~~~~~  164 (165)
T cd04146         159 LCREVR  164 (165)
T ss_pred             HHHHHh
Confidence            988664

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04114 Rab30 Rab30 subfamily

Probab=100.00  E-value=5.9e-31  Score=191.55  Aligned_cols=162  Identities=46%  Similarity=0.818  Sum_probs=144.4

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .++|+++|++|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+||++|+..+...+..++..+|++++|
T Consensus         7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   86 (169)
T cd04114           7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILT   86 (169)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            48999999999999999999998888777888888888888888988889999999999999999889999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||++++++++.+..|+..+......++|+++|+||.|+.+ ..++..+..+.+......+++++||++|.|++++|+++.
T Consensus        87 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~-~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~  165 (169)
T cd04114          87 YDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAE-RREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLA  165 (169)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHH
Confidence            9999999999999999999877656799999999999865 345666667777777778999999999999999999998


Q ss_pred             HHH
Q 028686          163 RDI  165 (205)
Q Consensus       163 ~~~  165 (205)
                      +.+
T Consensus       166 ~~~  168 (169)
T cd04114         166 CRL  168 (169)
T ss_pred             HHh
Confidence            764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04147 Ras_dva Ras-dva subfamily

Probab=100.00  E-value=4.2e-31  Score=197.37  Aligned_cols=162  Identities=30%  Similarity=0.464  Sum_probs=137.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEe
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   84 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   84 (205)
                      ||+++|++|||||||+++|+++.+...+.++.. +.....+.+.+..+.+.+||++|+..+..++..++..+|++++|||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            689999999999999999999998877777765 4555667788888899999999999999888999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-HhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           85 VTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALAD-EYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        85 ~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ++++++|+.+..|+..+..... .++|+++|+||+|+.+....+..++...... ..+.+++++||++|.|++++|++++
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  159 (198)
T cd04147          80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL  159 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999998887654 5799999999999865334455555544443 4567899999999999999999999


Q ss_pred             HHHHH
Q 028686          163 RDIKQ  167 (205)
Q Consensus       163 ~~~~~  167 (205)
                      +.+..
T Consensus       160 ~~~~~  164 (198)
T cd04147         160 RQANL  164 (198)
T ss_pred             HHhhc
Confidence            97753

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04129 Rho2 Rho2 subfamily

Probab=100.00  E-value=6.2e-31  Score=194.76  Aligned_cols=164  Identities=32%  Similarity=0.536  Sum_probs=138.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      .||+|+|++|+|||||+++|..+.+...+.++....+. ..+.+++..+.+.+||++|++.+......++..++++++||
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            58999999999999999999988887777777664443 45677888889999999999988877777889999999999


Q ss_pred             eCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC---------CCccCHHHHHHHHHHhCC-cEEEEcCCCCC
Q 028686           84 DVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDES---------KRAVPTSKGQALADEYGI-KFFETSAKTNL  152 (205)
Q Consensus        84 d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  152 (205)
                      |++++++|+.+. .|++.+.... +++|+++|+||.|+.+.         ...+..++...+++..+. +|+++||++|.
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  159 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE  159 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence            999999999997 5999987655 46999999999998542         234556778888999984 89999999999


Q ss_pred             CHHHHHHHHHHHHHHHh
Q 028686          153 NVEQVFFSIARDIKQRL  169 (205)
Q Consensus       153 gi~~~~~~i~~~~~~~~  169 (205)
                      |++++|+++.+.+...+
T Consensus       160 ~v~~~f~~l~~~~~~~~  176 (187)
T cd04129         160 GVDDVFEAATRAALLVR  176 (187)
T ss_pred             CHHHHHHHHHHHHhccc
Confidence            99999999998886543

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=100.00  E-value=1.3e-30  Score=188.51  Aligned_cols=162  Identities=39%  Similarity=0.627  Sum_probs=141.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      +||+++|++|||||||+++|....+...+.++.+.. +.....+++..+.+.+||+||+..+..++..+++.++++++||
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            589999999999999999999998877777777643 4456678888899999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           84 DVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        84 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      |++++++|..+..|+..+..... .++|+++|+||+|+.+ ......++...++..++++++++||+++.|++++|+++.
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  158 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED-KRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLV  158 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc-ccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999999887643 5799999999999965 234566777778888889999999999999999999999


Q ss_pred             HHHHH
Q 028686          163 RDIKQ  167 (205)
Q Consensus       163 ~~~~~  167 (205)
                      +.+.+
T Consensus       159 ~~~~~  163 (164)
T cd04139         159 REIRQ  163 (164)
T ss_pred             HHHHh
Confidence            87753

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.98  E-value=5.6e-32  Score=196.61  Aligned_cols=168  Identities=33%  Similarity=0.573  Sum_probs=152.7

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEEC-CEEEEEEEEeCCChhhhhhhhhhhccCCcEE
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGI   79 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   79 (205)
                      +..+|++++|+.++|||+|+..+..+.|+..|.||.. +-+...+.++ ++.+.+.+|||+|+++|+.+++..+.++|++
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf   80 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF   80 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence            3579999999999999999999999999999999998 6666778885 9999999999999999999998999999999


Q ss_pred             EEEEeCCChhHHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCCCC-----------CCccCHHHHHHHHHHhC-CcEEEE
Q 028686           80 LLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYG-IKFFET  146 (205)
Q Consensus        80 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piiiv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~  146 (205)
                      ++||++.+++||+++.. |+.++..++ +++|+++||+|.||+++           ...+..++..+++++.| +.|+||
T Consensus        81 l~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec  159 (198)
T KOG0393|consen   81 LLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC  159 (198)
T ss_pred             EEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence            99999999999999765 999999888 78999999999999743           23578899999999999 689999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHhc
Q 028686          147 SAKTNLNVEQVFFSIARDIKQRLA  170 (205)
Q Consensus       147 Sa~~~~gi~~~~~~i~~~~~~~~~  170 (205)
                      ||+++.|+.++|+..++.+....+
T Consensus       160 Sa~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  160 SALTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             hhhhhCCcHHHHHHHHHHHhcccc
Confidence            999999999999999999987543

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.98  E-value=1.3e-30  Score=190.81  Aligned_cols=161  Identities=32%  Similarity=0.586  Sum_probs=136.8

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      +.||+++|++|||||||+++|.++.+...+.||.+..+. ..+.+++..+.+.+|||+|++.+..++..++.++|++++|
T Consensus         1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   79 (175)
T cd01870           1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   79 (175)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEE
Confidence            358999999999999999999999988888888875554 4567888889999999999999998888899999999999


Q ss_pred             EeCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCC-----------CccCHHHHHHHHHHhCC-cEEEEcCC
Q 028686           83 YDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETSAK  149 (205)
Q Consensus        83 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~  149 (205)
                      ||++++++|+++. .|...+.... .++|+++|+||.|+.+..           ..+..++.++++...+. +++++||+
T Consensus        80 ~~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  158 (175)
T cd01870          80 FSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK  158 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence            9999999999986 4888877654 579999999999986421           23445677888887774 89999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 028686          150 TNLNVEQVFFSIARDI  165 (205)
Q Consensus       150 ~~~gi~~~~~~i~~~~  165 (205)
                      +|.|++++|+++.+.+
T Consensus       159 ~~~~v~~lf~~l~~~~  174 (175)
T cd01870         159 TKEGVREVFEMATRAA  174 (175)
T ss_pred             cCcCHHHHHHHHHHHh
Confidence            9999999999998764

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04149 Arf6 Arf6 subfamily

Probab=99.98  E-value=3.7e-31  Score=192.73  Aligned_cols=154  Identities=19%  Similarity=0.344  Sum_probs=125.5

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+++|++|||||||+++|..+.+. .+.||.+.++.  .+..  ..+.+.+||++|+++++.++..+++++|++++
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~   82 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   82 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            4689999999999999999999887764 45677776554  2333  45889999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHH-----hCCcEEEEcCCCCCCHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADE-----YGIKFFETSAKTNLNVE  155 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~  155 (205)
                      |||++++.+|+++..|+..+.... .+++|++||+||+|+.+   .+..+++..+...     ..++++++||++|.|++
T Consensus        83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~  159 (168)
T cd04149          83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD---AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY  159 (168)
T ss_pred             EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc---CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence            999999999999988777665432 35799999999999853   2456666665431     23578999999999999


Q ss_pred             HHHHHHHH
Q 028686          156 QVFFSIAR  163 (205)
Q Consensus       156 ~~~~~i~~  163 (205)
                      ++|+||.+
T Consensus       160 ~~~~~l~~  167 (168)
T cd04149         160 EGLTWLSS  167 (168)
T ss_pred             HHHHHHhc
Confidence            99999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.98  E-value=1.3e-30  Score=192.37  Aligned_cols=169  Identities=21%  Similarity=0.328  Sum_probs=135.8

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEE-CCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   80 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   80 (205)
                      ..+||+++|++|||||||++++....+... .||.+.++....+.+ ++..+.+.+||++|++++..++..+++++|+++
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii   80 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV   80 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence            578999999999999999999998887544 677776665555544 446688999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH--Hh----CCcEEEEcCCCCCC
Q 028686           81 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD--EY----GIKFFETSAKTNLN  153 (205)
Q Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~--~~----~~~~~~~Sa~~~~g  153 (205)
                      +|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+   ....+++..+..  ..    +++++++||+++.|
T Consensus        81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~g  157 (183)
T cd04152          81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN---ALSVSEVEKLLALHELSASTPWHVQPACAIIGEG  157 (183)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc---cCCHHHHHHHhCccccCCCCceEEEEeecccCCC
Confidence            9999999999999988888876543 25799999999999853   233444544432  11    24688999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccCC
Q 028686          154 VEQVFFSIARDIKQRLADTDS  174 (205)
Q Consensus       154 i~~~~~~i~~~~~~~~~~~~~  174 (205)
                      ++++|++|.+.+.+.+....+
T Consensus       158 i~~l~~~l~~~l~~~~~~~~~  178 (183)
T cd04152         158 LQEGLEKLYEMILKRRKMLRQ  178 (183)
T ss_pred             HHHHHHHHHHHHHHHHhhhhh
Confidence            999999999999776655433

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd00876 Ras Ras family

Probab=99.98  E-value=1.9e-30  Score=186.87  Aligned_cols=158  Identities=40%  Similarity=0.684  Sum_probs=141.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEe
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   84 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   84 (205)
                      ||+++|++|||||||+++|++..+...+.++.+ +.......+++..+.+.+||+||+..+..++..+++.+|++++|||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999999888777777776 5566677778778899999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHH
Q 028686           85 VTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR  163 (205)
Q Consensus        85 ~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~  163 (205)
                      +++++++.++..|+..+..... .+.|+++++||+|+.. ...+..+++..++...+.+++++|++++.|++++|++|.+
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~  158 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLEN-ERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVR  158 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccc-cceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHh
Confidence            9999999999999999987764 5799999999999965 4566778888888888899999999999999999999987


Q ss_pred             H
Q 028686          164 D  164 (205)
Q Consensus       164 ~  164 (205)
                      .
T Consensus       159 ~  159 (160)
T cd00876         159 E  159 (160)
T ss_pred             h
Confidence            5

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.98  E-value=9.5e-31  Score=192.72  Aligned_cols=159  Identities=18%  Similarity=0.325  Sum_probs=125.8

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+++|+++||||||+++|..+.+. .+.||.+.++.  .+..  ..+.+++||+||+++++.++..+++++|++|+
T Consensus        16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~   90 (181)
T PLN00223         16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            4689999999999999999999987775 46788876543  3444  34789999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHh-----CCcEEEEcCCCCCCHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-----GIKFFETSAKTNLNVE  155 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~  155 (205)
                      |||+++++++..+..|+..+... ..+++|++|++||+|+++.   ...+++.+...-.     .+.++++||++|+|++
T Consensus        91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~---~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~  167 (181)
T PLN00223         91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA---MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
T ss_pred             EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC---CCHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence            99999999999988877776532 2257999999999999642   3334433332211     1246689999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028686          156 QVFFSIARDIKQR  168 (205)
Q Consensus       156 ~~~~~i~~~~~~~  168 (205)
                      ++|+||.+.+..+
T Consensus       168 e~~~~l~~~~~~~  180 (181)
T PLN00223        168 EGLDWLSNNIANK  180 (181)
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999887653

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.97  E-value=1.9e-30  Score=192.20  Aligned_cols=167  Identities=39%  Similarity=0.625  Sum_probs=154.4

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ...||+++|.+|+|||+|+.+|....|...|.||+. +.+.+.+.+++..+.+.|+||+|++++..+...++.+++++++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            467999999999999999999999999999999998 8888999999999999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  160 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  160 (205)
                      ||+++++.||+.+..+++.|.+... ..+|+++||||+|+.. .+.+..++++.++..++++|+|+||+.+.+++++|..
T Consensus        81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~-~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~  159 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLER-ERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYE  159 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchh-ccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHH
Confidence            9999999999999999999955443 5689999999999975 4889999999999999999999999999999999999


Q ss_pred             HHHHHHHHhc
Q 028686          161 IARDIKQRLA  170 (205)
Q Consensus       161 i~~~~~~~~~  170 (205)
                      +.+.+.....
T Consensus       160 L~r~~~~~~~  169 (196)
T KOG0395|consen  160 LVREIRLPRE  169 (196)
T ss_pred             HHHHHHhhhc
Confidence            9998877433

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.97  E-value=7e-30  Score=187.87  Aligned_cols=164  Identities=35%  Similarity=0.549  Sum_probs=141.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      .||+++|.+|+|||||+++|.+..+...+.|+.+..+ ...+.+++..+.+.+||+||++++..++..++..++++++||
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            5899999999999999999999988777777776444 355667777888999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           84 DVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        84 d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      |+++.++++.+..|+..+.+.. ..+.|+++++||+|+.. ...+..++...++..++.+++++||+++.|++++|+++.
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  159 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHT-QRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLI  159 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhh-cCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999999988887654 35789999999999964 344566677788888889999999999999999999999


Q ss_pred             HHHHHHh
Q 028686          163 RDIKQRL  169 (205)
Q Consensus       163 ~~~~~~~  169 (205)
                      +.+....
T Consensus       160 ~~~~~~~  166 (180)
T cd04137         160 EEIEKVE  166 (180)
T ss_pred             HHHHHhc
Confidence            9887654

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=1.5e-32  Score=184.41  Aligned_cols=160  Identities=49%  Similarity=0.909  Sum_probs=149.4

Q ss_pred             EECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCC
Q 028686            8 YFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT   86 (205)
Q Consensus         8 v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   86 (205)
                      ++|++++|||+|+-++..+-+- ....+|.|+++..+.++.+++.+++++|||+|+++|++....|++++|+++++||+.
T Consensus         2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia   81 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA   81 (192)
T ss_pred             ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence            6899999999999998887753 567899999999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHHHHH
Q 028686           87 DESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIK  166 (205)
Q Consensus        87 ~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~  166 (205)
                      +..||++.+.|+.+|..+....+.+.+++||+|+.. ++.+..++.+++++.+++|+.|+||++|.+++-.|-.|.+.+.
T Consensus        82 nkasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~-er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~  160 (192)
T KOG0083|consen   82 NKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAH-ERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK  160 (192)
T ss_pred             cchhHHHHHHHHHHHHHHHHhhHhHhhhccccccch-hhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence            999999999999999999888899999999999965 5778889999999999999999999999999999999998887


Q ss_pred             HH
Q 028686          167 QR  168 (205)
Q Consensus       167 ~~  168 (205)
                      +.
T Consensus       161 k~  162 (192)
T KOG0083|consen  161 KL  162 (192)
T ss_pred             Hh
Confidence            64

>cd04158 ARD1 ARD1 subfamily

Probab=99.97  E-value=2.2e-30  Score=188.83  Aligned_cols=156  Identities=19%  Similarity=0.346  Sum_probs=128.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEe
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   84 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   84 (205)
                      ||+++|.++||||||+++|.+..+.. +.||.+.++.  .+..  ..+.+.+||+||+..+..++..+++.+|++++|||
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            68999999999999999999987654 6777775554  3334  34789999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC------CcEEEEcCCCCCCHHHH
Q 028686           85 VTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG------IKFFETSAKTNLNVEQV  157 (205)
Q Consensus        85 ~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~~  157 (205)
                      ++++++|+++..|+..+.+.. ..+.|++||+||+|+.+   .+..++++.++...+      +.++++||++|.|++++
T Consensus        76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~  152 (169)
T cd04158          76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG---ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEG  152 (169)
T ss_pred             CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc---CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHH
Confidence            999999999999988887543 24589999999999953   356677777664322      36789999999999999


Q ss_pred             HHHHHHHHHHH
Q 028686          158 FFSIARDIKQR  168 (205)
Q Consensus       158 ~~~i~~~~~~~  168 (205)
                      |+||.+.+.+.
T Consensus       153 f~~l~~~~~~~  163 (169)
T cd04158         153 LDWLSRQLVAA  163 (169)
T ss_pred             HHHHHHHHhhc
Confidence            99998876654

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.97  E-value=3.4e-30  Score=188.91  Aligned_cols=156  Identities=17%  Similarity=0.332  Sum_probs=124.4

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+++|.+|||||||+++|..+.+. .+.||.+.++..  +..  ..+.+.+||+||++.+..++..+++++|++|+
T Consensus        12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~   86 (175)
T smart00177       12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF   86 (175)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence            4689999999999999999999887764 467888766543  333  34789999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-----HhCCcEEEEcCCCCCCHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVE  155 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~  155 (205)
                      |||++++++++.+..|+..+.... .+++|++||+||.|+.+.   ...+++.....     ...+.++++||++|.|++
T Consensus        87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  163 (175)
T smart00177       87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA---MKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY  163 (175)
T ss_pred             EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC---CCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence            999999999999988888775432 356899999999999542   23333333221     123457789999999999


Q ss_pred             HHHHHHHHHH
Q 028686          156 QVFFSIARDI  165 (205)
Q Consensus       156 ~~~~~i~~~~  165 (205)
                      ++|+||.+.+
T Consensus       164 e~~~~l~~~~  173 (175)
T smart00177      164 EGLTWLSNNL  173 (175)
T ss_pred             HHHHHHHHHh
Confidence            9999997764

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.97  E-value=2.2e-30  Score=187.05  Aligned_cols=152  Identities=19%  Similarity=0.371  Sum_probs=120.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      +||+++|.+|||||||++++..+.+. .+.||.+.++.  .+..  ..+.+.+||++|++++..++..+++++|++++||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999888776 46788876553  2333  3588999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCCCccCHHHHH-HHH----HHhCCcEEEEcCCCCCCHHHH
Q 028686           84 DVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQ-ALA----DEYGIKFFETSAKTNLNVEQV  157 (205)
Q Consensus        84 d~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~-~~~----~~~~~~~~~~Sa~~~~gi~~~  157 (205)
                      |++++++|+++..|+..+... ...+.|++|++||.|+.+.   ...+++. .+.    ...++.++++||++|.|++++
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~  152 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA---MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEG  152 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC---CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHH
Confidence            999999999998877776543 2246899999999999542   2233332 221    122356789999999999999


Q ss_pred             HHHHHH
Q 028686          158 FFSIAR  163 (205)
Q Consensus       158 ~~~i~~  163 (205)
                      |++|.+
T Consensus       153 ~~~l~~  158 (159)
T cd04150         153 LDWLSN  158 (159)
T ss_pred             HHHHhc
Confidence            999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd00157 Rho Rho (Ras homology) family

Probab=99.97  E-value=1.4e-29  Score=184.49  Aligned_cols=158  Identities=34%  Similarity=0.636  Sum_probs=134.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      +||+++|++|||||||+++|.++.+...+.++.. +........++..+.+.+||+||++.+......+++.+|++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            6899999999999999999999998777777765 344455677788899999999999988888888889999999999


Q ss_pred             eCCChhHHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCCCCCC----------ccCHHHHHHHHHHhCC-cEEEEcCCCC
Q 028686           84 DVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDESKR----------AVPTSKGQALADEYGI-KFFETSAKTN  151 (205)
Q Consensus        84 d~~~~~s~~~~~~-~~~~i~~~~~~~~piiiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~  151 (205)
                      |++++++|..... |+..+.... .+.|+++|+||+|+.+...          .+..++...+....+. +++++||++|
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  158 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ  158 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence            9999999988754 777776654 4799999999999875432          3456778888888887 9999999999


Q ss_pred             CCHHHHHHHHHH
Q 028686          152 LNVEQVFFSIAR  163 (205)
Q Consensus       152 ~gi~~~~~~i~~  163 (205)
                      .|++++|+++++
T Consensus       159 ~gi~~l~~~i~~  170 (171)
T cd00157         159 EGVKEVFEEAIR  170 (171)
T ss_pred             CCHHHHHHHHhh
Confidence            999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.97  E-value=2.4e-29  Score=187.53  Aligned_cols=149  Identities=18%  Similarity=0.319  Sum_probs=127.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEEC-----CEEEEEEEEeCCChhhhhhhhhhhccCCcE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-----GKRIKLQIWDTAGQERFRTITTAYYRGAMG   78 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   78 (205)
                      +||+++|++|+|||||+++|.++.+...+.+|++.++..+.+.++     +..+.+.+||++|++++..++..+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999999988899999988877777663     567899999999999999999999999999


Q ss_pred             EEEEEeCCChhHHHHHHHHHHHHHhhc-------------------CCCCcEEEEEeCCCCCCCCCccCHH----HHHHH
Q 028686           79 ILLVYDVTDESSFNNIRNWIRNIEQHA-------------------SDNVNKVLVGNKADMDESKRAVPTS----KGQAL  135 (205)
Q Consensus        79 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-------------------~~~~piiiv~nK~Dl~~~~~~~~~~----~~~~~  135 (205)
                      +|+|||+++++||+++..|+..+....                   ..++|++||+||.|+.+. ..+..+    ....+
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~-r~~~~~~~~~~~~~i  159 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE-KESSGNLVLTARGFV  159 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh-cccchHHHhhHhhhH
Confidence            999999999999999999999997642                   246999999999999652 333333    24567


Q ss_pred             HHHhCCcEEEEcCCCCCC
Q 028686          136 ADEYGIKFFETSAKTNLN  153 (205)
Q Consensus       136 ~~~~~~~~~~~Sa~~~~g  153 (205)
                      +++.+++.++.++.+...
T Consensus       160 a~~~~~~~i~~~c~~~~~  177 (202)
T cd04102         160 AEQGNAEEINLNCTNGRL  177 (202)
T ss_pred             HHhcCCceEEEecCCccc
Confidence            889999999999887544

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.97  E-value=9.8e-31  Score=189.81  Aligned_cols=152  Identities=20%  Similarity=0.313  Sum_probs=125.8

Q ss_pred             EEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDV   85 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   85 (205)
                      |+++|++|||||||+++|.++.+...+.||.+.+.    ..+++..+.+.+||++|+++++.++..+++++|++++|||.
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   77 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS   77 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence            78999999999999999999888788888888543    23344568899999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCH----HHHHHHHHHhCCcEEEEcCCC------CCCHH
Q 028686           86 TDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPT----SKGQALADEYGIKFFETSAKT------NLNVE  155 (205)
Q Consensus        86 ~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~gi~  155 (205)
                      +++++|..+..|+..+.... +++|+++|+||.|+... ..+..    .++..++++.++.++++||++      ++||+
T Consensus        78 t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~  155 (164)
T cd04162          78 ADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAA-RSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK  155 (164)
T ss_pred             CCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCC-CCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence            99999999999988886544 67999999999998653 22111    123455666678899999988      99999


Q ss_pred             HHHHHHHH
Q 028686          156 QVFFSIAR  163 (205)
Q Consensus       156 ~~~~~i~~  163 (205)
                      ++|+.++.
T Consensus       156 ~~~~~~~~  163 (164)
T cd04162         156 DLLSQLIN  163 (164)
T ss_pred             HHHHHHhc
Confidence            99998863

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.97  E-value=4e-29  Score=188.97  Aligned_cols=164  Identities=30%  Similarity=0.586  Sum_probs=144.3

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   80 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   80 (205)
                      +..+||+++|++|||||||+++++.+.+...+.+|.+.++....+..++..+.+.+||++|++++..++..++..+++++
T Consensus         7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i   86 (215)
T PTZ00132          7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAI   86 (215)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEE
Confidence            35689999999999999999999999888889999998888888888888999999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686           81 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  160 (205)
Q Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  160 (205)
                      +|||++++++|..+..|+..+.... .++|+++++||.|+.+  ..+.. +...++...++.++++||++|.|++++|.+
T Consensus        87 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~--~~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~  162 (215)
T PTZ00132         87 IMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKD--RQVKA-RQITFHRKKNLQYYDISAKSNYNFEKPFLW  162 (215)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCcc--ccCCH-HHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            9999999999999999999998665 5699999999999853  22333 334567777899999999999999999999


Q ss_pred             HHHHHHHH
Q 028686          161 IARDIKQR  168 (205)
Q Consensus       161 i~~~~~~~  168 (205)
                      |.+.+...
T Consensus       163 ia~~l~~~  170 (215)
T PTZ00132        163 LARRLTND  170 (215)
T ss_pred             HHHHHhhc
Confidence            99988754

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=1.4e-29  Score=186.70  Aligned_cols=158  Identities=21%  Similarity=0.364  Sum_probs=124.6

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+++|++|||||||++++..+.+.. +.||.+.++.  .+..  ..+.+.+||++|++.++.++..+++++|++|+|
T Consensus        17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v   91 (182)
T PTZ00133         17 EVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV   91 (182)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence            4899999999999999999998887754 5678776554  3344  347899999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-----HhCCcEEEEcCCCCCCHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVEQ  156 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~  156 (205)
                      ||++++++|+++..++..+... ...+.|++||+||.|+.+.   ...+++.....     ...+.++++||++|.|+++
T Consensus        92 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e  168 (182)
T PTZ00133         92 VDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA---MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYE  168 (182)
T ss_pred             EeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC---CCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHH
Confidence            9999999999988877766433 2246899999999998542   23333322211     1224567999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028686          157 VFFSIARDIKQR  168 (205)
Q Consensus       157 ~~~~i~~~~~~~  168 (205)
                      +|++|.+.+.+.
T Consensus       169 ~~~~l~~~i~~~  180 (182)
T PTZ00133        169 GLDWLSANIKKS  180 (182)
T ss_pred             HHHHHHHHHHHh
Confidence            999999887664

>cd01893 Miro1 Miro1 subfamily

Probab=99.97  E-value=2.7e-29  Score=182.51  Aligned_cols=161  Identities=26%  Similarity=0.391  Sum_probs=126.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      +||+++|++|||||||+++|.++.+...+.++.. ++ .....+++..+.+.+||++|++.+...+..++..+|++++||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP-EI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc-ce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            5899999999999999999999988665444322 22 344456677789999999999988877788889999999999


Q ss_pred             eCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCCCcc-CHHHHHHHHHHhC--CcEEEEcCCCCCCHHHHHH
Q 028686           84 DVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAV-PTSKGQALADEYG--IKFFETSAKTNLNVEQVFF  159 (205)
Q Consensus        84 d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~~~~  159 (205)
                      |++++++|+.+. .|++.+.... .+.|+++|+||+|+.+..... ..+++..++..+.  .+++++||+++.|++++|+
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  157 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence            999999999985 5888887654 479999999999996532211 2334444444443  3799999999999999999


Q ss_pred             HHHHHHHH
Q 028686          160 SIARDIKQ  167 (205)
Q Consensus       160 ~i~~~~~~  167 (205)
                      .+.+.+..
T Consensus       158 ~~~~~~~~  165 (166)
T cd01893         158 YAQKAVLH  165 (166)
T ss_pred             HHHHHhcC
Confidence            99887753

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04154 Arl2 Arl2 subfamily

Probab=99.97  E-value=2.3e-29  Score=184.13  Aligned_cols=154  Identities=19%  Similarity=0.318  Sum_probs=124.9

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..++|+++|++|||||||+++|.+..+ ..+.+|.+.  ....+.+++  +.+.+||+||++.++.++..+++.+|++++
T Consensus        13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~--~~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   87 (173)
T cd04154          13 REMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGF--QIKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDALIW   87 (173)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCC-CCcCCcccc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            468999999999999999999998754 345677663  334445553  779999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-----HhCCcEEEEcCCCCCCHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVE  155 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~  155 (205)
                      |||++++++|.++..|+..+... ...+.|+++|+||+|+.+.   ...+++..+..     ..+++++++||++|.|++
T Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  164 (173)
T cd04154          88 VVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA---LSEEEIREALELDKISSHHWRIQPCSAVTGEGLL  164 (173)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC---CCHHHHHHHhCccccCCCceEEEeccCCCCcCHH
Confidence            99999999999998888877543 2367999999999999642   24555555543     235789999999999999


Q ss_pred             HHHHHHHH
Q 028686          156 QVFFSIAR  163 (205)
Q Consensus       156 ~~~~~i~~  163 (205)
                      ++|+++..
T Consensus       165 ~l~~~l~~  172 (173)
T cd04154         165 QGIDWLVD  172 (173)
T ss_pred             HHHHHHhc
Confidence            99999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PTZ00099 rab6; Provisional

Probab=99.97  E-value=7.7e-29  Score=181.47  Aligned_cols=143  Identities=40%  Similarity=0.683  Sum_probs=129.2

Q ss_pred             CCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhc
Q 028686           26 GSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA  105 (205)
Q Consensus        26 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~  105 (205)
                      +.|.+.+.||++.++..+.+.+++..+.+.||||+|++++..++..+++++|++|+|||++++++|+.+..|+..+....
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            45677889999999998989999999999999999999999999999999999999999999999999999999998766


Q ss_pred             CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHHHHHHHh
Q 028686          106 SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL  169 (205)
Q Consensus       106 ~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  169 (205)
                      .+++|++||+||+||.+ ...+..+++..++..+++.++++||++|.||+++|++|++.+.+..
T Consensus        83 ~~~~piilVgNK~DL~~-~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~  145 (176)
T PTZ00099         83 GKDVIIALVGNKTDLGD-LRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD  145 (176)
T ss_pred             CCCCeEEEEEECccccc-ccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence            56799999999999964 3557788888899888999999999999999999999999886644

>cd04157 Arl6 Arl6 subfamily

Probab=99.97  E-value=9.1e-30  Score=183.91  Aligned_cols=152  Identities=17%  Similarity=0.312  Sum_probs=119.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC-CCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS-FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      +|+++|++|||||||+++|.+.. +...+.||.+....  .+..  ..+.+.+||+||++++..++..+++.+|++|+|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFEK--GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEEE--CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            58999999999999999999876 35567788774433  2233  3578999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHhhc---CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-----HhCCcEEEEcCCCCCCHH
Q 028686           84 DVTDESSFNNIRNWIRNIEQHA---SDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVE  155 (205)
Q Consensus        84 d~~~~~s~~~~~~~~~~i~~~~---~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~  155 (205)
                      |++++.++..+..|+..+....   ..++|+++|+||+|+.+..   ..++......     ...+.++++||++|.|++
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~---~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~  153 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL---TAVKITQLLGLENIKDKPWHIFASNALTGEGLD  153 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC---CHHHHHHHhCCccccCceEEEEEeeCCCCCchH
Confidence            9999999999888888876542   2579999999999986422   2233322211     123468999999999999


Q ss_pred             HHHHHHHH
Q 028686          156 QVFFSIAR  163 (205)
Q Consensus       156 ~~~~~i~~  163 (205)
                      ++|++|.+
T Consensus       154 ~~~~~l~~  161 (162)
T cd04157         154 EGVQWLQA  161 (162)
T ss_pred             HHHHHHhc
Confidence            99999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.96  E-value=1.4e-28  Score=180.16  Aligned_cols=154  Identities=22%  Similarity=0.294  Sum_probs=122.4

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..++|+++|++|+|||||+++|..+.+.. +.||.+.++.  .+.++  .+.+.+||+||++.+...+..+++.+|++++
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   88 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL   88 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence            35899999999999999999999888764 5677775543  33343  4789999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHH-HH----HHhCCcEEEEcCCCCCCHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQA-LA----DEYGIKFFETSAKTNLNVE  155 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~  155 (205)
                      |+|+++++++.....|+..+.... ..++|+++++||+|+.+   ....+++.. +.    ...+++++++||++|.|++
T Consensus        89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~---~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~  165 (174)
T cd04153          89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG---AMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLP  165 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC---CCCHHHHHHHhCcccccCCceEEEecccCCCCCHH
Confidence            999999999998888777765443 25699999999999854   223344322 21    2334679999999999999


Q ss_pred             HHHHHHHH
Q 028686          156 QVFFSIAR  163 (205)
Q Consensus       156 ~~~~~i~~  163 (205)
                      ++|++|.+
T Consensus       166 e~~~~l~~  173 (174)
T cd04153         166 EGLDWIAS  173 (174)
T ss_pred             HHHHHHhc
Confidence            99999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.96  E-value=1.1e-28  Score=179.52  Aligned_cols=151  Identities=20%  Similarity=0.313  Sum_probs=121.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEe
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   84 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   84 (205)
                      +|+++|++|||||||+++|.+. +...+.||.+..  ...+...  .+.+.+||+||+..++.++..+++++|++++|||
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            4799999999999999999977 666778888754  3344554  4789999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHH------HHHHHHhC--CcEEEEcCCCC----
Q 028686           85 VTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKG------QALADEYG--IKFFETSAKTN----  151 (205)
Q Consensus        85 ~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~------~~~~~~~~--~~~~~~Sa~~~----  151 (205)
                      ++++++++.+..|+..+.+... .++|+++|+||.|+.+..   ...++      ..++.+.+  +.++++||++|    
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~---~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~  152 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL---LGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKK  152 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC---CHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCc
Confidence            9999999999999998876532 579999999999996532   12222      22232223  56778999998    


Q ss_pred             --CCHHHHHHHHHH
Q 028686          152 --LNVEQVFFSIAR  163 (205)
Q Consensus       152 --~gi~~~~~~i~~  163 (205)
                        .|+++.|+||.+
T Consensus       153 ~~~g~~~~~~wl~~  166 (167)
T cd04161         153 IDPSIVEGLRWLLA  166 (167)
T ss_pred             cccCHHHHHHHHhc
Confidence              899999999975

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.96  E-value=1.8e-28  Score=176.96  Aligned_cols=152  Identities=24%  Similarity=0.423  Sum_probs=120.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEe
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   84 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   84 (205)
                      +|+++|++|||||||+++|.+..+.. +.||.+.++.  .+... ..+.+.+||+||++.+...+..++..+|++++|+|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~--~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVE--MLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceE--EEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            58999999999999999999988754 4567664433  33333 35789999999999999989999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHH------HHHhCCcEEEEcCCCCCCHHHH
Q 028686           85 VTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQAL------ADEYGIKFFETSAKTNLNVEQV  157 (205)
Q Consensus        85 ~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~gi~~~  157 (205)
                      ++++.++..+..|+..+.+.. ..+.|+++|+||+|+...   ...+++...      +...+++++++||++|+|++++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~  153 (160)
T cd04156          77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA---LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEA  153 (160)
T ss_pred             CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC---cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHH
Confidence            999999999988888876543 257999999999998532   223333322      2223457999999999999999


Q ss_pred             HHHHHH
Q 028686          158 FFSIAR  163 (205)
Q Consensus       158 ~~~i~~  163 (205)
                      |++|.+
T Consensus       154 ~~~i~~  159 (160)
T cd04156         154 FRKLAS  159 (160)
T ss_pred             HHHHhc
Confidence            999864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04151 Arl1 Arl1 subfamily

Probab=99.96  E-value=1.5e-28  Score=177.15  Aligned_cols=151  Identities=22%  Similarity=0.345  Sum_probs=116.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEe
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   84 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   84 (205)
                      ||+++|++++|||||+++|..+.+. .+.||.+.++.  .+..  ..+.+.+||+||++.+..++..++..+|++++|+|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            6899999999999999999887765 34566665443  3333  34789999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-----HhCCcEEEEcCCCCCCHHHHH
Q 028686           85 VTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVEQVF  158 (205)
Q Consensus        85 ~~~~~s~~~~~~~~~~i~~-~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~~~  158 (205)
                      ++++.++.....++..+.+ ....+.|+++|+||+|+.+..   ...++.....     ..+.+++++||++|.|++++|
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  152 (158)
T cd04151          76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL---SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGM  152 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC---CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHH
Confidence            9999888877666655433 223569999999999985421   2233322111     123579999999999999999


Q ss_pred             HHHHH
Q 028686          159 FSIAR  163 (205)
Q Consensus       159 ~~i~~  163 (205)
                      ++|.+
T Consensus       153 ~~l~~  157 (158)
T cd04151         153 DWLVN  157 (158)
T ss_pred             HHHhc
Confidence            99875

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.96  E-value=5e-28  Score=175.76  Aligned_cols=152  Identities=20%  Similarity=0.353  Sum_probs=120.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCC------CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcE
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSF------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   78 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   78 (205)
                      +|+++|++|+|||||+++|.+...      ...+.+|.+.++.  .+.++  ...+.+||+||++.+..++..+++.+|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            589999999999999999986432      2344566665543  34444  4789999999999999999999999999


Q ss_pred             EEEEEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHH-------hCCcEEEEcCCC
Q 028686           79 ILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADE-------YGIKFFETSAKT  150 (205)
Q Consensus        79 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~  150 (205)
                      +++|+|+++++++.....|+..+.+.. ..++|+++++||+|+.+   ....+++..+...       .+++++++||++
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  153 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD---ALSVEEIKEVFQDKAEEIGRRDCLVLPVSALE  153 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc---CCCHHHHHHHhccccccccCCceEEEEeeCCC
Confidence            999999999999999888888876543 25799999999999854   2344555554432       246899999999


Q ss_pred             CCCHHHHHHHHHH
Q 028686          151 NLNVEQVFFSIAR  163 (205)
Q Consensus       151 ~~gi~~~~~~i~~  163 (205)
                      |.|++++++||.+
T Consensus       154 g~gv~e~~~~l~~  166 (167)
T cd04160         154 GTGVREGIEWLVE  166 (167)
T ss_pred             CcCHHHHHHHHhc
Confidence            9999999999865

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd00879 Sar1 Sar1 subfamily

Probab=99.96  E-value=1e-27  Score=177.83  Aligned_cols=155  Identities=19%  Similarity=0.297  Sum_probs=125.9

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ...+|+++|++|||||||+++|.+..+. .+.||.+...  ..+.+++  +.+.+||+||+..+..++..+++.++++++
T Consensus        18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil   92 (190)
T cd00879          18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF   92 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            4589999999999999999999988764 4566666433  3445554  678999999999998999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHH----------------hCCcEE
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADE----------------YGIKFF  144 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~  144 (205)
                      |+|+++++++.....|+..+.... ..+.|+++++||+|+..   .+..++++.+...                ..+.++
T Consensus        93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (190)
T cd00879          93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG---AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF  169 (190)
T ss_pred             EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC---CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence            999999999998888888876543 25699999999999853   3556666666542                225689


Q ss_pred             EEcCCCCCCHHHHHHHHHHH
Q 028686          145 ETSAKTNLNVEQVFFSIARD  164 (205)
Q Consensus       145 ~~Sa~~~~gi~~~~~~i~~~  164 (205)
                      ++||++|+|++++|+||.+.
T Consensus       170 ~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         170 MCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             EeEecCCCChHHHHHHHHhh
Confidence            99999999999999999764

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PLN00023 GTP-binding protein; Provisional

Probab=99.96  E-value=5.7e-27  Score=183.12  Aligned_cols=139  Identities=22%  Similarity=0.431  Sum_probs=121.5

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEEC-------------CEEEEEEEEeCCChhhhhhh
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-------------GKRIKLQIWDTAGQERFRTI   68 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~i~D~~g~~~~~~~   68 (205)
                      ..+||+|+|+.|||||||+++|.++.+...+.+|++.++..+.+.++             ++.+.+.|||++|+++|+.+
T Consensus        20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL   99 (334)
T PLN00023         20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDC   99 (334)
T ss_pred             cceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhh
Confidence            46899999999999999999999999988899999988877777664             25688999999999999999


Q ss_pred             hhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcC------------CCCcEEEEEeCCCCCCCC--Cc---cCHHH
Q 028686           69 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS------------DNVNKVLVGNKADMDESK--RA---VPTSK  131 (205)
Q Consensus        69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~piiiv~nK~Dl~~~~--~~---~~~~~  131 (205)
                      +..++++++++|+|||++++++|+++..|++.+.....            .++|++||+||+||....  ..   +..++
T Consensus       100 ~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e~  179 (334)
T PLN00023        100 RSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDA  179 (334)
T ss_pred             hHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHHH
Confidence            99999999999999999999999999999999987631            258999999999996532  12   36889


Q ss_pred             HHHHHHHhC
Q 028686          132 GQALADEYG  140 (205)
Q Consensus       132 ~~~~~~~~~  140 (205)
                      ++.|+++++
T Consensus       180 a~~~A~~~g  188 (334)
T PLN00023        180 ARQWVEKQG  188 (334)
T ss_pred             HHHHHHHcC
Confidence            999999887

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.96  E-value=2.2e-27  Score=173.87  Aligned_cols=156  Identities=26%  Similarity=0.457  Sum_probs=127.0

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+++|.+||||||++++|..+... ...||.|..  ...+.+++  +.+.+||++|+..++.+|+.++.++|++||
T Consensus        13 ~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~--~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iIf   87 (175)
T PF00025_consen   13 KEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFN--IEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGIIF   87 (175)
T ss_dssp             SEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEE--EEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEEE
T ss_pred             cEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccc--cceeeeCc--EEEEEEeccccccccccceeeccccceeEE
Confidence            3589999999999999999999887643 366777744  44556665  678999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH------HhCCcEEEEcCCCCCCH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD------EYGIKFFETSAKTNLNV  154 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi  154 (205)
                      |+|.++++.+.+....+..+.... ..++|++|++||.|+.+   ....+++.....      ...+.++.+||.+|+|+
T Consensus        88 VvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~---~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv  164 (175)
T PF00025_consen   88 VVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD---AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGV  164 (175)
T ss_dssp             EEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT---SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTH
T ss_pred             EEecccceeecccccchhhhcchhhcccceEEEEeccccccC---cchhhHHHhhhhhhhcccCCceEEEeeeccCCcCH
Confidence            999999999998888777765542 36799999999999854   345566665433      22366899999999999


Q ss_pred             HHHHHHHHHHH
Q 028686          155 EQVFFSIARDI  165 (205)
Q Consensus       155 ~~~~~~i~~~~  165 (205)
                      .+.|+||.+++
T Consensus       165 ~e~l~WL~~~~  175 (175)
T PF00025_consen  165 DEGLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcC
Confidence            99999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.96  E-value=1.2e-27  Score=172.29  Aligned_cols=151  Identities=21%  Similarity=0.357  Sum_probs=121.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEe
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   84 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   84 (205)
                      ||+++|.+|||||||++++++..+ ..+.++.+....  .+.+.  .+.+.+||+||+..+...+..+++.+|++++|||
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVE--TVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            689999999999999999999873 445666664443  34444  4779999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-----HhCCcEEEEcCCCCCCHHHHH
Q 028686           85 VTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVEQVF  158 (205)
Q Consensus        85 ~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~~~  158 (205)
                      +++++++..+..|+..+.... ..+.|+++++||+|+....   ..++......     ...++++++||++|.|++++|
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  152 (158)
T cd00878          76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL---SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGL  152 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc---CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHH
Confidence            999999999988888876643 3679999999999986422   2333333322     234689999999999999999


Q ss_pred             HHHHH
Q 028686          159 FSIAR  163 (205)
Q Consensus       159 ~~i~~  163 (205)
                      ++|..
T Consensus       153 ~~l~~  157 (158)
T cd00878         153 DWLLQ  157 (158)
T ss_pred             HHHhh
Confidence            99875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.95  E-value=5.1e-27  Score=173.35  Aligned_cols=154  Identities=16%  Similarity=0.237  Sum_probs=121.9

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .++|+++|.+|||||||+++|.++.+. .+.||.+...  ..+.+++  +.+.+||+||+..++.++..++.++|++++|
T Consensus        17 ~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~v   91 (184)
T smart00178       17 HAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTS--EELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIVYL   91 (184)
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence            489999999999999999999988754 3345555433  2334443  7799999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHH------------hCCcEEEEcCC
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADE------------YGIKFFETSAK  149 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa~  149 (205)
                      +|+++++++.....++..+.... ..+.|+++|+||.|++.   .+..+++.+....            ....++++||+
T Consensus        92 vD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~---~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~  168 (184)
T smart00178       92 VDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY---AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVV  168 (184)
T ss_pred             EECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC---CCCHHHHHHHcCCCcccccccccCCceeEEEEeecc
Confidence            99999999999888877775432 25789999999999853   3455555544321            12469999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 028686          150 TNLNVEQVFFSIARD  164 (205)
Q Consensus       150 ~~~gi~~~~~~i~~~  164 (205)
                      ++.|++++++||...
T Consensus       169 ~~~g~~~~~~wl~~~  183 (184)
T smart00178      169 RRMGYGEGFKWLSQY  183 (184)
T ss_pred             cCCChHHHHHHHHhh
Confidence            999999999999764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.95  E-value=7.3e-29  Score=174.55  Aligned_cols=167  Identities=34%  Similarity=0.591  Sum_probs=156.0

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .||++++|..++||||+++++|.+-|...+..|++.++....+.+++.++...+||++|+++++.+..+|+++|++.++|
T Consensus        20 aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLV   99 (246)
T KOG4252|consen   20 AIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLV   99 (246)
T ss_pred             hEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEEE
Confidence            58999999999999999999999999999999999999988888888888999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      |+-+|+.||+.+..|++.+.... ..+|.++|-||+||.+ +..+...+++.+++.....++.+|++...|+.++|.+|+
T Consensus       100 FSTTDr~SFea~~~w~~kv~~e~-~~IPtV~vqNKIDlve-ds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLa  177 (246)
T KOG4252|consen  100 FSTTDRYSFEATLEWYNKVQKET-ERIPTVFVQNKIDLVE-DSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLA  177 (246)
T ss_pred             EecccHHHHHHHHHHHHHHHHHh-ccCCeEEeeccchhhH-hhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHH
Confidence            99999999999999999998877 4699999999999987 566889999999999999999999999999999999999


Q ss_pred             HHHHHHhcc
Q 028686          163 RDIKQRLAD  171 (205)
Q Consensus       163 ~~~~~~~~~  171 (205)
                      +.+.++...
T Consensus       178 eK~~q~~kq  186 (246)
T KOG4252|consen  178 EKLTQQKKQ  186 (246)
T ss_pred             HHHHHHHHH
Confidence            998776544

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.95  E-value=4.3e-27  Score=168.73  Aligned_cols=151  Identities=21%  Similarity=0.418  Sum_probs=121.6

Q ss_pred             EEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDV   85 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   85 (205)
                      |+++|++|||||||+++|.+.++...+.|+.+.++..  +...+  +.+.+||+||++.+..++..++..+|++++|+|+
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~   77 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA   77 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence            7999999999999999999999888888888866553  33433  7899999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHH-----HHhCCcEEEEcCCCCCCHHHHHH
Q 028686           86 TDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETSAKTNLNVEQVFF  159 (205)
Q Consensus        86 ~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~~~~  159 (205)
                      ++++++.....|+..+.... ..++|+++|+||+|+.+..   ..++.....     ....++++++|++++.|++++++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  154 (159)
T cd04159          78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL---SVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD  154 (159)
T ss_pred             CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc---CHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence            99999988888777765432 2578999999999985421   122222211     12236889999999999999999


Q ss_pred             HHHH
Q 028686          160 SIAR  163 (205)
Q Consensus       160 ~i~~  163 (205)
                      +|.+
T Consensus       155 ~l~~  158 (159)
T cd04159         155 WLIK  158 (159)
T ss_pred             HHhh
Confidence            9875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.95  E-value=5e-26  Score=157.94  Aligned_cols=158  Identities=20%  Similarity=0.351  Sum_probs=130.5

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .++|+++|..||||||++++|.+.. .....||.+  |..+++.+++  +.+.+||.+|+...++.|..|+..+|++|+|
T Consensus        16 E~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~g--f~Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdglIwv   90 (185)
T KOG0073|consen   16 EVRILILGLDNSGKTTIVKKLLGED-TDTISPTLG--FQIKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGLIWV   90 (185)
T ss_pred             eeEEEEEecCCCCchhHHHHhcCCC-ccccCCccc--eeeEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeEEEE
Confidence            5899999999999999999998877 455678887  5555555544  8899999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCCCccCHHHH------HHHHHHhCCcEEEEcCCCCCCHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKG------QALADEYGIKFFETSAKTNLNVE  155 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~------~~~~~~~~~~~~~~Sa~~~~gi~  155 (205)
                      +|.+++..+++..+.+..+... .-.+.|++|++||.|++.+   +..+++      .++++...++++.||+.+|+++.
T Consensus        91 vDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~---l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~  167 (185)
T KOG0073|consen   91 VDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGA---LSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLL  167 (185)
T ss_pred             EECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccc---cCHHHHHHhhCHHHhccccCceEEEEeccccccHH
Confidence            9999999998887766666443 2367899999999999632   333333      44556667999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028686          156 QVFFSIARDIKQR  168 (205)
Q Consensus       156 ~~~~~i~~~~~~~  168 (205)
                      +.++|+...+..+
T Consensus       168 ~gidWL~~~l~~r  180 (185)
T KOG0073|consen  168 EGIDWLCDDLMSR  180 (185)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988774

>cd01890 LepA LepA subfamily

Probab=99.94  E-value=7.7e-26  Score=166.10  Aligned_cols=154  Identities=27%  Similarity=0.349  Sum_probs=114.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC-------CCCCcccc------eeeEEEEEEEE--E---CCEEEEEEEEeCCChhhhh
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS-------FTTSFITT------IGIDFKIRTIE--L---DGKRIKLQIWDTAGQERFR   66 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~-------~~~~~~~t------~~~~~~~~~~~--~---~~~~~~~~i~D~~g~~~~~   66 (205)
                      +|+++|.+++|||||+++|++..       +...+.++      .+.++......  +   ++..+.+.+|||||++++.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            68999999999999999998742       11122221      23333333222  2   5667889999999999999


Q ss_pred             hhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC---cE
Q 028686           67 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI---KF  143 (205)
Q Consensus        67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~  143 (205)
                      .++..+++.+|++|+|||+++..++.....|.....    .++|+++|+||+|+.+..   ..+...++++.+++   .+
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~----~~~~iiiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~  154 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE----NNLEIIPVINKIDLPSAD---PERVKQQIEDVLGLDPSEA  154 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH----cCCCEEEEEECCCCCcCC---HHHHHHHHHHHhCCCcccE
Confidence            999999999999999999998776666655543321    468999999999985421   12334455666665   48


Q ss_pred             EEEcCCCCCCHHHHHHHHHHHH
Q 028686          144 FETSAKTNLNVEQVFFSIARDI  165 (205)
Q Consensus       144 ~~~Sa~~~~gi~~~~~~i~~~~  165 (205)
                      +++||++|.|++++|+++.+.+
T Consensus       155 ~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         155 ILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             EEeeccCCCCHHHHHHHHHhhC
Confidence            9999999999999999998764

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.94  E-value=2.3e-25  Score=159.31  Aligned_cols=158  Identities=32%  Similarity=0.429  Sum_probs=130.1

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+++|.+|+|||||+++|....+...+.++.+.++....+..++..+.+.+||+||+..+..++..+.+.++.++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            47999999999999999999999987778888888888877777877778899999999999998898889999999999


Q ss_pred             EeCCCh-hHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686           83 YDVTDE-SSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  160 (205)
Q Consensus        83 ~d~~~~-~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  160 (205)
                      +|+... .++.+.. .|...+......+.|+++++||.|+....  ...+....+......+++++||.++.|++++|++
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~  158 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK--LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKI  158 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch--hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHH
Confidence            999887 7777766 67777766554479999999999986422  3333334444444578999999999999999998


Q ss_pred             HH
Q 028686          161 IA  162 (205)
Q Consensus       161 i~  162 (205)
                      |-
T Consensus       159 l~  160 (161)
T TIGR00231       159 VE  160 (161)
T ss_pred             hh
Confidence            63

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.94  E-value=6e-25  Score=166.42  Aligned_cols=170  Identities=38%  Similarity=0.536  Sum_probs=139.4

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   80 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   80 (205)
                      |..+||+++|++|||||||+++|.+..+...+.+|.+..+........+..+.+.+||++|+++++.++..++..+++++
T Consensus         3 ~~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l   82 (219)
T COG1100           3 MKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGIL   82 (219)
T ss_pred             cceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEE
Confidence            44589999999999999999999999999999999888888777776666889999999999999999999999999999


Q ss_pred             EEEeCCC-hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC-----------ccCHHHHHHHHHHh---CCcEEE
Q 028686           81 LVYDVTD-ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-----------AVPTSKGQALADEY---GIKFFE  145 (205)
Q Consensus        81 ~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~-----------~~~~~~~~~~~~~~---~~~~~~  145 (205)
                      +|||..+ ..+++....|...+......+.|+++++||+|+.....           ..............   ...+++
T Consensus        83 ~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (219)
T COG1100          83 IVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLE  162 (219)
T ss_pred             EEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeE
Confidence            9999999 55566667799999887755799999999999976431           22222222222222   334899


Q ss_pred             EcCC--CCCCHHHHHHHHHHHHHHHhc
Q 028686          146 TSAK--TNLNVEQVFFSIARDIKQRLA  170 (205)
Q Consensus       146 ~Sa~--~~~gi~~~~~~i~~~~~~~~~  170 (205)
                      +|++  ++.++.++|..+.+.+.....
T Consensus       163 ~s~~~~~~~~v~~~~~~~~~~~~~~~~  189 (219)
T COG1100         163 TSAKSLTGPNVNELFKELLRKLLEEIE  189 (219)
T ss_pred             eecccCCCcCHHHHHHHHHHHHHHhhh
Confidence            9999  999999999999999975543

>cd04155 Arl3 Arl3 subfamily

Probab=99.94  E-value=2.6e-25  Score=162.38  Aligned_cols=151  Identities=19%  Similarity=0.330  Sum_probs=117.3

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..++|+++|++|||||||+++|.+..+. .+.++.+.++  ..+..++  ..+.+||++|+..+...+..+++.+|++++
T Consensus        13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~   87 (173)
T cd04155          13 EEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIY   87 (173)
T ss_pred             CccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence            4589999999999999999999987653 3456666333  3444554  678999999999888888899999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC--------CcEEEEcCCCCC
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG--------IKFFETSAKTNL  152 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~  152 (205)
                      |+|+++..++.....|+..+.... ..++|+++++||.|+.+.   ...+++   ....+        .+++++||++|.
T Consensus        88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~---~~~~~i---~~~l~~~~~~~~~~~~~~~Sa~~~~  161 (173)
T cd04155          88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATA---APAEEI---AEALNLHDLRDRTWHIQACSAKTGE  161 (173)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccC---CCHHHH---HHHcCCcccCCCeEEEEEeECCCCC
Confidence            999999999988887776665432 356999999999998542   112222   22232        247899999999


Q ss_pred             CHHHHHHHHHH
Q 028686          153 NVEQVFFSIAR  163 (205)
Q Consensus       153 gi~~~~~~i~~  163 (205)
                      |++++|+||.+
T Consensus       162 gi~~~~~~l~~  172 (173)
T cd04155         162 GLQEGMNWVCK  172 (173)
T ss_pred             CHHHHHHHHhc
Confidence            99999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.94  E-value=1.4e-25  Score=163.10  Aligned_cols=155  Identities=17%  Similarity=0.156  Sum_probs=108.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh---------hhhhhhccC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR---------TITTAYYRG   75 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~~~   75 (205)
                      +|+++|.+|+|||||+++|.+..+.....+....+.....+..  ..+.+.+|||||.....         .........
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   79 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL   79 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence            7899999999999999999998764322221112222222222  34789999999974211         001111223


Q ss_pred             CcEEEEEEeCCChhHH--HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCC
Q 028686           76 AMGILLVYDVTDESSF--NNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN  153 (205)
Q Consensus        76 ~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  153 (205)
                      +|++++|+|+++++++  +....|++.+.... .+.|+++|+||+|+.+. ..+  .+...+....+++++++||++|.|
T Consensus        80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~-~~~--~~~~~~~~~~~~~~~~~Sa~~~~g  155 (168)
T cd01897          80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTF-EDL--SEIEEEEELEGEEVLKISTLTEEG  155 (168)
T ss_pred             cCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCch-hhH--HHHHHhhhhccCceEEEEecccCC
Confidence            6899999999987653  66667888886554 47999999999998642 222  224455555568999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028686          154 VEQVFFSIARDI  165 (205)
Q Consensus       154 i~~~~~~i~~~~  165 (205)
                      ++++|+++.+.+
T Consensus       156 i~~l~~~l~~~~  167 (168)
T cd01897         156 VDEVKNKACELL  167 (168)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998875

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=9.7e-26  Score=160.24  Aligned_cols=159  Identities=19%  Similarity=0.365  Sum_probs=131.3

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      +..+|+++|..++||||++++|..+++... .||+|...  ..+.+.  ++.+.+||.+|+++++.+|..|+++.+++||
T Consensus        16 ~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnV--E~v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIf   90 (181)
T KOG0070|consen   16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNV--ETVEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGLIF   90 (181)
T ss_pred             ceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccce--eEEEEc--ceEEEEEecCCCcccccchhhhccCCcEEEE
Confidence            458999999999999999999999987655 89998444  444454  5889999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-----HhCCcEEEEcCCCCCCHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVE  155 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~  155 (205)
                      |+|.+|++-+.++...+..+..+.. .+.|+++.+||.|++++   .+..++.....     ...+.+..++|.+|+|+.
T Consensus        91 VvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a---ls~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~  167 (181)
T KOG0070|consen   91 VVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA---LSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLY  167 (181)
T ss_pred             EEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc---CCHHHHHhHhhhhccCCCCcEEeeccccccccHH
Confidence            9999999999999887777766654 67999999999999653   34444443322     233678889999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028686          156 QVFFSIARDIKQR  168 (205)
Q Consensus       156 ~~~~~i~~~~~~~  168 (205)
                      +.++|+...+..+
T Consensus       168 egl~wl~~~~~~~  180 (181)
T KOG0070|consen  168 EGLDWLSNNLKKR  180 (181)
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999988653

>cd01898 Obg Obg subfamily

Probab=99.94  E-value=3e-25  Score=161.53  Aligned_cols=157  Identities=16%  Similarity=0.138  Sum_probs=110.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChh----hhhhhhhhh---ccCCc
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----RFRTITTAY---YRGAM   77 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~---~~~~d   77 (205)
                      +|+++|.+|||||||+++|.+........+....+.....+.+++. ..+.+|||||..    ..+.+...+   +..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            6899999999999999999976542111111111111112233332 478999999963    222233333   34699


Q ss_pred             EEEEEEeCCCh-hHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHH-hCCcEEEEcCCCCCC
Q 028686           78 GILLVYDVTDE-SSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADE-YGIKFFETSAKTNLN  153 (205)
Q Consensus        78 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~g  153 (205)
                      ++++|+|++++ ++++.+..|.+.+.....  .+.|+++|+||+|+.+. . ...+....+... .+.+++++||+++.|
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~-~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  158 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE-E-ELFELLKELLKELWGKPVFPISALTGEG  158 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc-h-hhHHHHHHHHhhCCCCCEEEEecCCCCC
Confidence            99999999999 799999999998876542  36899999999998642 2 233445555555 367899999999999


Q ss_pred             HHHHHHHHHHH
Q 028686          154 VEQVFFSIARD  164 (205)
Q Consensus       154 i~~~~~~i~~~  164 (205)
                      ++++|+++.+.
T Consensus       159 i~~l~~~i~~~  169 (170)
T cd01898         159 LDELLRKLAEL  169 (170)
T ss_pred             HHHHHHHHHhh
Confidence            99999998864

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.93  E-value=8.4e-25  Score=174.29  Aligned_cols=163  Identities=13%  Similarity=0.096  Sum_probs=119.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh----hhhhh---hhhccCC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTIT---TAYYRGA   76 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~---~~~~~~~   76 (205)
                      -.|+|+|.||||||||+++|.+.+......|.++.....-.+.+. ....+.+||+||..+    ...+.   ...++.+
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a  237 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT  237 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence            468999999999999999999876443322322223333334442 124589999999642    11232   3345679


Q ss_pred             cEEEEEEeCCChhHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCH
Q 028686           77 MGILLVYDVTDESSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV  154 (205)
Q Consensus        77 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  154 (205)
                      +++++|+|+++.++++++..|.+++..+..  .+.|+++|+||+|+.+. .....+..+.+....+.+++++||+++.|+
T Consensus       238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~-~~~~~~~~~~~~~~~~~~i~~iSAktg~GI  316 (335)
T PRK12299        238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE-EEEREKRAALELAALGGPVFLISAVTGEGL  316 (335)
T ss_pred             CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCc-hhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence            999999999998889999999999987643  46899999999999642 223334455555666789999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 028686          155 EQVFFSIARDIKQR  168 (205)
Q Consensus       155 ~~~~~~i~~~~~~~  168 (205)
                      ++++++|.+.+.++
T Consensus       317 ~eL~~~L~~~l~~~  330 (335)
T PRK12299        317 DELLRALWELLEEA  330 (335)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999887654

>cd04171 SelB SelB subfamily

Probab=99.93  E-value=6.4e-25  Score=158.66  Aligned_cols=153  Identities=18%  Similarity=0.160  Sum_probs=106.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCC---CCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGS---FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   80 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   80 (205)
                      +.|+++|.+|||||||+++|.+..   +...+.++.+.+.....+.+.. ...+.+|||||++++......++..+|+++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii   79 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL   79 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence            368999999999999999998643   3333334444444444455542 357999999999988777777888999999


Q ss_pred             EEEeCCC---hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC-CccCHHHHHHHHHH---hCCcEEEEcCCCCCC
Q 028686           81 LVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK-RAVPTSKGQALADE---YGIKFFETSAKTNLN  153 (205)
Q Consensus        81 ~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~g  153 (205)
                      +|+|+++   +++++.+.    .+...  ...|+++++||+|+.+.. .....++..++...   .+.+++++||+++.|
T Consensus        80 ~V~d~~~~~~~~~~~~~~----~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  153 (164)
T cd04171          80 LVVAADEGIMPQTREHLE----ILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG  153 (164)
T ss_pred             EEEECCCCccHhHHHHHH----HHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence            9999987   44444332    22211  124999999999996421 11122344444443   357999999999999


Q ss_pred             HHHHHHHHHH
Q 028686          154 VEQVFFSIAR  163 (205)
Q Consensus       154 i~~~~~~i~~  163 (205)
                      ++++|+++.+
T Consensus       154 v~~l~~~l~~  163 (164)
T cd04171         154 IEELKEYLDE  163 (164)
T ss_pred             HHHHHHHHhh
Confidence            9999998754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.93  E-value=2.4e-25  Score=157.65  Aligned_cols=134  Identities=19%  Similarity=0.207  Sum_probs=101.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChh-----hhhhhhhhhccCCcEE
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE-----RFRTITTAYYRGAMGI   79 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~~~~~~~~d~~   79 (205)
                      ||+++|++|||||||+++|.+..+  .+.+|.+.++.            -.+||+||..     .+..+.. .++++|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~~~------------~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQAVEYN------------DGAIDTPGEYVENRRLYSALIV-TAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCcc--ccccceeEEEc------------CeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence            799999999999999999998765  23444433222            1689999973     2444433 47899999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC-cEEEEcCCCCCCHHHHH
Q 028686           80 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVEQVF  158 (205)
Q Consensus        80 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~  158 (205)
                      ++|||+++++++.. ..|.+.+      ..|+++|+||+|+.+  .....++..++++..+. +++++||+++.|++++|
T Consensus        67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  137 (142)
T TIGR02528        67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE--ADVDIERAKELLETAGAEPIFEISSVDEQGLEALV  137 (142)
T ss_pred             EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC--cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHH
Confidence            99999999998765 2343322      249999999999864  33456677788877775 89999999999999999


Q ss_pred             HHHH
Q 028686          159 FSIA  162 (205)
Q Consensus       159 ~~i~  162 (205)
                      +++.
T Consensus       138 ~~l~  141 (142)
T TIGR02528       138 DYLN  141 (142)
T ss_pred             HHHh
Confidence            9874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd01878 HflX HflX subfamily

Probab=99.93  E-value=7.2e-25  Score=164.40  Aligned_cols=154  Identities=19%  Similarity=0.148  Sum_probs=111.7

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh---------hhhhhhhhc
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---------FRTITTAYY   73 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~   73 (205)
                      .++|+++|++|||||||+++|.+..+.....+..+.+.....+.+.+. ..+.+|||||..+         +.... ..+
T Consensus        41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~  118 (204)
T cd01878          41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-EEV  118 (204)
T ss_pred             CCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-HHH
Confidence            379999999999999999999998743322222222333334444432 2689999999732         22221 235


Q ss_pred             cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCC
Q 028686           74 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN  153 (205)
Q Consensus        74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  153 (205)
                      ..+|++++|+|+++++++.....|.+.+......+.|+++|+||+|+.+...      ........+.+++++||+++.|
T Consensus       119 ~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~------~~~~~~~~~~~~~~~Sa~~~~g  192 (204)
T cd01878         119 AEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEE------LEERLEAGRPDAVFISAKTGEG  192 (204)
T ss_pred             hcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHH------HHHHhhcCCCceEEEEcCCCCC
Confidence            6899999999999999888887788877665545689999999999854211      1133444567899999999999


Q ss_pred             HHHHHHHHHHH
Q 028686          154 VEQVFFSIARD  164 (205)
Q Consensus       154 i~~~~~~i~~~  164 (205)
                      +++++++|.+.
T Consensus       193 i~~l~~~L~~~  203 (204)
T cd01878         193 LDELLEAIEEL  203 (204)
T ss_pred             HHHHHHHHHhh
Confidence            99999999765

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.93  E-value=2.3e-24  Score=156.47  Aligned_cols=155  Identities=17%  Similarity=0.126  Sum_probs=110.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEEC-CEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      .|+++|.+|+|||||+++|....+.....++...+.....+..+ +....+.+|||||+..+..++...+..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            48999999999999999999988766544444444444444443 13467899999999998888888899999999999


Q ss_pred             eCCCh---hHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH------HhCCcEEEEcCCCCCCH
Q 028686           84 DVTDE---SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD------EYGIKFFETSAKTNLNV  154 (205)
Q Consensus        84 d~~~~---~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi  154 (205)
                      |+++.   ++++.+    ..+..   .+.|+++|+||+|+.........+....+..      ...++++++|++++.|+
T Consensus        82 d~~~~~~~~~~~~~----~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  154 (168)
T cd01887          82 AADDGVMPQTIEAI----KLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGI  154 (168)
T ss_pred             ECCCCccHHHHHHH----HHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCH
Confidence            99884   333322    22222   4689999999999864221111112222211      11368999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028686          155 EQVFFSIARDIK  166 (205)
Q Consensus       155 ~~~~~~i~~~~~  166 (205)
                      +++++++.+...
T Consensus       155 ~~l~~~l~~~~~  166 (168)
T cd01887         155 DDLLEAILLLAE  166 (168)
T ss_pred             HHHHHHHHHhhh
Confidence            999999988754

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.92  E-value=9e-24  Score=149.60  Aligned_cols=153  Identities=50%  Similarity=0.849  Sum_probs=122.2

Q ss_pred             EECCCCCcHHHHHHHHHhCCC-CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCC
Q 028686            8 YFERGGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT   86 (205)
Q Consensus         8 v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   86 (205)
                      ++|++|+|||||+++|.+... .....++. .++.............+.+||+||...+...+...++.+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999999886 45555555 6777777777777889999999999988887888899999999999999


Q ss_pred             ChhHHHHHHHHHHH-HHhhcCCCCcEEEEEeCCCCCCCCCccCHHH-HHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           87 DESSFNNIRNWIRN-IEQHASDNVNKVLVGNKADMDESKRAVPTSK-GQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        87 ~~~s~~~~~~~~~~-i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ++.++..+..|... .......+.|+++++||.|+...... .... .........++++++|+.++.|+++++++|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVV-SEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccch-HHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            99999998887322 33334467999999999998653222 1111 3444555668999999999999999999985

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.92  E-value=1.6e-24  Score=161.35  Aligned_cols=150  Identities=19%  Similarity=0.184  Sum_probs=106.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHHh--CCCCCCc------------ccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSD--GSFTTSF------------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT   69 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~--~~~~~~~------------~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~   69 (205)
                      -+|+++|.+++|||||+++|++  +.+...+            .++.+.++......+....+.+.+|||||++++...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            4799999999999999999997  4443332            1233444444444454456789999999999999999


Q ss_pred             hhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHH-------hCCc
Q 028686           70 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADE-------YGIK  142 (205)
Q Consensus        70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~-------~~~~  142 (205)
                      ..+++.+|++++|||+++.. +.....|+..+..   .++|+++|+||+|+.+.......+++.++...       .+++
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP  158 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence            99999999999999998742 2333334444332   46899999999999643222234445555422       3678


Q ss_pred             EEEEcCCCCCCHHHH
Q 028686          143 FFETSAKTNLNVEQV  157 (205)
Q Consensus       143 ~~~~Sa~~~~gi~~~  157 (205)
                      ++++||++|.|+.++
T Consensus       159 iv~~Sa~~g~~~~~~  173 (194)
T cd01891         159 VLYASAKNGWASLNL  173 (194)
T ss_pred             EEEeehhcccccccc
Confidence            999999999887544

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PRK04213 GTP-binding protein; Provisional

Probab=99.92  E-value=8.5e-25  Score=163.62  Aligned_cols=154  Identities=16%  Similarity=0.174  Sum_probs=106.1

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCC-----------hhhhhhhhhh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG-----------QERFRTITTA   71 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~   71 (205)
                      .++|+++|.+|+|||||+++|.+..+...+.++.+  +....+.+.    .+.+|||||           ++.++.++..
T Consensus         9 ~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t--~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   82 (201)
T PRK04213          9 KPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT--RKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIVR   82 (201)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee--eCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence            47999999999999999999999876655555443  333333333    489999999           5667766666


Q ss_pred             hcc----CCcEEEEEEeCCChhHHH----------HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH
Q 028686           72 YYR----GAMGILLVYDVTDESSFN----------NIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD  137 (205)
Q Consensus        72 ~~~----~~d~~i~v~d~~~~~s~~----------~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~  137 (205)
                      ++.    .++++++|+|.+....+.          .-..+...+.   ..++|+++|+||+|+.+..    .+...+++.
T Consensus        83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~----~~~~~~~~~  155 (201)
T PRK04213         83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR----DEVLDEIAE  155 (201)
T ss_pred             HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH----HHHHHHHHH
Confidence            654    356778888876432210          0011122222   2469999999999985422    345566666


Q ss_pred             HhCC---------cEEEEcCCCCCCHHHHHHHHHHHHHHHhc
Q 028686          138 EYGI---------KFFETSAKTNLNVEQVFFSIARDIKQRLA  170 (205)
Q Consensus       138 ~~~~---------~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~  170 (205)
                      .+++         +++++||++| |++++|++|.+.+.+..+
T Consensus       156 ~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~~  196 (201)
T PRK04213        156 RLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAKR  196 (201)
T ss_pred             HhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCccc
Confidence            6664         4799999999 999999999988755443

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.92  E-value=5.4e-25  Score=150.18  Aligned_cols=159  Identities=19%  Similarity=0.356  Sum_probs=128.3

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+++.++|..+||||||+|.+..+.+.+.-.||.|...+    .+....+.+.+||.||+..++++|+.|++.+++++|
T Consensus        19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY   94 (186)
T KOG0075|consen   19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY   94 (186)
T ss_pred             heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence            3578999999999999999999999998888999985544    334456889999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHH-----HHhCCcEEEEcCCCCCCHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETSAKTNLNVE  155 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~-~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~  155 (205)
                      |+|+.+++.++..+..+..+.. ..-.++|+++.+||.|++++   ....++.+-.     ....+.+|.+|+++..+|+
T Consensus        95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A---L~~~~li~rmgL~sitdREvcC~siScke~~Nid  171 (186)
T KOG0075|consen   95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA---LSKIALIERMGLSSITDREVCCFSISCKEKVNID  171 (186)
T ss_pred             EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc---ccHHHHHHHhCccccccceEEEEEEEEcCCccHH
Confidence            9999999988887775555543 33378999999999998653   3333332211     1223779999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028686          156 QVFFSIARDIKQ  167 (205)
Q Consensus       156 ~~~~~i~~~~~~  167 (205)
                      -+..|+++.-..
T Consensus       172 ~~~~Wli~hsk~  183 (186)
T KOG0075|consen  172 ITLDWLIEHSKS  183 (186)
T ss_pred             HHHHHHHHHhhh
Confidence            999999987654

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.92  E-value=1.8e-23  Score=150.18  Aligned_cols=148  Identities=18%  Similarity=0.175  Sum_probs=111.1

Q ss_pred             EECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhh------hhhhhcc--CCcEE
Q 028686            8 YFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------ITTAYYR--GAMGI   79 (205)
Q Consensus         8 v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~~--~~d~~   79 (205)
                      |+|.+|+|||||+++|.+........++.+.+.....+.+++  ..+.+|||||+..+..      +...++.  .+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999999875444455555556556666766  4689999999876553      3455564  89999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHH
Q 028686           80 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF  159 (205)
Q Consensus        80 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  159 (205)
                      ++|+|.++++...   .|...+..   .++|+++|+||+|+.+. ..+ ......+...++++++++||.++.|++++++
T Consensus        79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~  150 (158)
T cd01879          79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEK-RGI-KIDLDKLSELLGVPVVPTSARKGEGIDELKD  150 (158)
T ss_pred             EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhccc-ccc-hhhHHHHHHhhCCCeEEEEccCCCCHHHHHH
Confidence            9999999865432   34444433   36899999999999653 222 2334567777789999999999999999999


Q ss_pred             HHHHHH
Q 028686          160 SIARDI  165 (205)
Q Consensus       160 ~i~~~~  165 (205)
                      ++.+.+
T Consensus       151 ~l~~~~  156 (158)
T cd01879         151 AIAELA  156 (158)
T ss_pred             HHHHHh
Confidence            998763

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.91  E-value=3e-23  Score=165.24  Aligned_cols=159  Identities=14%  Similarity=0.111  Sum_probs=114.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh----hhhhhhh---hccCC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTA---YYRGA   76 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~---~~~~~   76 (205)
                      -.|+|+|.|+||||||+++|.+........|.++.......+.+++ ...+.+||+||...    ...+...   .+..+
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera  236 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT  236 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence            5789999999999999999998764322222112222222334432 25689999999742    1223333   34579


Q ss_pred             cEEEEEEeCCCh---hHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCC
Q 028686           77 MGILLVYDVTDE---SSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN  151 (205)
Q Consensus        77 d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  151 (205)
                      +++++|+|+++.   ++++.+..|.+++..+..  .+.|++||+||+|+.+.  ....+..+.+.+..+.+++++||+++
T Consensus       237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~--~~~~~~~~~l~~~~~~~vi~iSAktg  314 (329)
T TIGR02729       237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE--EELAELLKELKKALGKPVFPISALTG  314 (329)
T ss_pred             CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh--HHHHHHHHHHHHHcCCcEEEEEccCC
Confidence            999999999986   688888888888876542  46899999999999653  22334455566667789999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028686          152 LNVEQVFFSIARDI  165 (205)
Q Consensus       152 ~gi~~~~~~i~~~~  165 (205)
                      +|++++++++.+.+
T Consensus       315 ~GI~eL~~~I~~~l  328 (329)
T TIGR02729       315 EGLDELLYALAELL  328 (329)
T ss_pred             cCHHHHHHHHHHHh
Confidence            99999999998754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.91  E-value=3.8e-23  Score=166.00  Aligned_cols=152  Identities=22%  Similarity=0.182  Sum_probs=110.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChh---------hhhhhhhhhcc
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE---------RFRTITTAYYR   74 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~~~   74 (205)
                      ++|+++|.+|+|||||+|+|.+........+..+.++....+.+.+. ..+.+|||+|..         .+...+. .+.
T Consensus       190 ~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tle-~~~  267 (351)
T TIGR03156       190 PTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATLE-EVR  267 (351)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHHH-HHH
Confidence            78999999999999999999998743333333334455556666322 478999999972         2333222 477


Q ss_pred             CCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCH
Q 028686           75 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV  154 (205)
Q Consensus        75 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  154 (205)
                      ++|++++|+|++++.+++++..|...+......+.|+++|+||+|+.+.      .+..... ....+++++||++|.|+
T Consensus       268 ~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~------~~v~~~~-~~~~~~i~iSAktg~GI  340 (351)
T TIGR03156       268 EADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE------PRIERLE-EGYPEAVFVSAKTGEGL  340 (351)
T ss_pred             hCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh------HhHHHHH-hCCCCEEEEEccCCCCH
Confidence            8999999999999988888877777776654456899999999998541      1122221 12246899999999999


Q ss_pred             HHHHHHHHHH
Q 028686          155 EQVFFSIARD  164 (205)
Q Consensus       155 ~~~~~~i~~~  164 (205)
                      ++++++|.+.
T Consensus       341 ~eL~~~I~~~  350 (351)
T TIGR03156       341 DLLLEAIAER  350 (351)
T ss_pred             HHHHHHHHhh
Confidence            9999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.91  E-value=1.8e-23  Score=143.58  Aligned_cols=114  Identities=33%  Similarity=0.589  Sum_probs=88.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCC--CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFT--TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      ||+|+|++|||||||+++|++..+.  ..+.++.+..+......+......+.+||++|++.+...+..++..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999998875  22233333344445556666777799999999998888878889999999999


Q ss_pred             EeCCChhHHHHHHHH---HHHHHhhcCCCCcEEEEEeCCC
Q 028686           83 YDVTDESSFNNIRNW---IRNIEQHASDNVNKVLVGNKAD  119 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~---~~~i~~~~~~~~piiiv~nK~D  119 (205)
                      ||+++++||+++..+   +..+.... .++|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence            999999999998654   55555443 5699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.91  E-value=4.6e-23  Score=172.16  Aligned_cols=178  Identities=17%  Similarity=0.170  Sum_probs=121.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh--------hhhhhhhhcc
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTAYYR   74 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~   74 (205)
                      .+|+|+|.+|||||||+|+|++.... ....++.+.+.....+.+++  ..+.+|||||.+.        +......+++
T Consensus        39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~  116 (472)
T PRK03003         39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVAMR  116 (472)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence            58999999999999999999987642 33444445555555566666  4588999999752        3444566788


Q ss_pred             CCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCH
Q 028686           75 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV  154 (205)
Q Consensus        75 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  154 (205)
                      .+|++++|+|+++..++.. ..|...+..   .+.|+++|+||+|+....    .+....+...++ ..+++||++|.|+
T Consensus       117 ~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~----~~~~~~~~~g~~-~~~~iSA~~g~gi  187 (472)
T PRK03003        117 TADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE----ADAAALWSLGLG-EPHPVSALHGRGV  187 (472)
T ss_pred             hCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc----hhhHHHHhcCCC-CeEEEEcCCCCCc
Confidence            9999999999998766543 234444443   469999999999985321    122222222333 3579999999999


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCCccccccCCCCCCCC
Q 028686          155 EQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGV  192 (205)
Q Consensus       155 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (205)
                      +++|+++.+.+.+.....+....+.++.+...+..+++
T Consensus       188 ~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKS  225 (472)
T PRK03003        188 GDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKS  225 (472)
T ss_pred             HHHHHHHHhhcccccccccccccceEEEEECCCCCCHH
Confidence            99999999888653222211234456666666666554

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1.7e-23  Score=141.83  Aligned_cols=156  Identities=21%  Similarity=0.405  Sum_probs=128.8

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .++|+++|..++||||++..|+.+.. ....||.|  |....+.+  +++.+.+||.+|+++.+.+|.+|+....++|||
T Consensus        17 E~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvG--FnvetVty--kN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV   91 (180)
T KOG0071|consen   17 EMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   91 (180)
T ss_pred             cceEEEEecccCCceehhhHHhcCCC-cccccccc--eeEEEEEe--eeeEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence            47899999999999999999998764 45678888  55555555  558999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-----HhCCcEEEEcCCCCCCHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVEQ  156 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~  156 (205)
                      +|..+.+.++++++.+..+.... ..+.|++|.+||.|++++   ..++++..+..     ...+.+..+++.+|.|+.+
T Consensus        92 ~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A---~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~e  168 (180)
T KOG0071|consen   92 VDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDA---MKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKE  168 (180)
T ss_pred             EeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccc---cCHHHHHHHhccccccCCccEeeccccccchhHHH
Confidence            99999999999988766665544 367999999999999654   45677766543     2236788999999999999


Q ss_pred             HHHHHHHHHH
Q 028686          157 VFFSIARDIK  166 (205)
Q Consensus       157 ~~~~i~~~~~  166 (205)
                      -|.|++..+.
T Consensus       169 glswlsnn~~  178 (180)
T KOG0071|consen  169 GLSWLSNNLK  178 (180)
T ss_pred             HHHHHHhhcc
Confidence            9999987653

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.90  E-value=1.6e-22  Score=166.83  Aligned_cols=152  Identities=20%  Similarity=0.185  Sum_probs=117.2

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCC-CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhh--------hhhhc
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTAYY   73 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~   73 (205)
                      .++|+++|.+|+|||||+|+|++... .....++++.++....+.+++  ..+.+|||||...+...        ...++
T Consensus       203 g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~  280 (442)
T TIGR00450       203 GFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKAI  280 (442)
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHHH
Confidence            47999999999999999999998753 223345555677777778877  45789999998544322        23577


Q ss_pred             cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCC
Q 028686           74 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN  153 (205)
Q Consensus        74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  153 (205)
                      +.+|++++|||++++.+++..  |+..+..   .+.|+++|+||+|+.+.       +...+++.++.+++++||++ .|
T Consensus       281 ~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~-------~~~~~~~~~~~~~~~vSak~-~g  347 (442)
T TIGR00450       281 KQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN-------SLEFFVSSKVLNSSNLSAKQ-LK  347 (442)
T ss_pred             hhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc-------chhhhhhhcCCceEEEEEec-CC
Confidence            899999999999998887765  6665542   46899999999998542       12345566778899999998 59


Q ss_pred             HHHHHHHHHHHHHHHh
Q 028686          154 VEQVFFSIARDIKQRL  169 (205)
Q Consensus       154 i~~~~~~i~~~~~~~~  169 (205)
                      |+++|+.+.+.+.+..
T Consensus       348 I~~~~~~L~~~i~~~~  363 (442)
T TIGR00450       348 IKALVDLLTQKINAFY  363 (442)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999887654

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.90  E-value=3.3e-22  Score=137.49  Aligned_cols=165  Identities=26%  Similarity=0.365  Sum_probs=137.9

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCC--CCCCcccceeeEEEEEEEEE-CCEEEEEEEEeCCChhhh-hhhhhhhccCCcE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGS--FTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERF-RTITTAYYRGAMG   78 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~-~~~~~~~~~~~d~   78 (205)
                      -.||+++|..++|||+++++|+.+.  ...++.||+. |.|...+.. .+-.-.+.++||.|-... ..+..+|+.-+|+
T Consensus         9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa   87 (198)
T KOG3883|consen    9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA   87 (198)
T ss_pred             ceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence            4799999999999999999998776  3356677776 455455544 345567999999997665 6778899999999


Q ss_pred             EEEEEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHH
Q 028686           79 ILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV  157 (205)
Q Consensus        79 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  157 (205)
                      +++||+..+++||..+..+-..|.++.. ..+||++++||.|+.+ +.++..+-++.|++.-.+.++++++.+...+-+.
T Consensus        88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~-p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep  166 (198)
T KOG3883|consen   88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAE-PREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP  166 (198)
T ss_pred             EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhccc-chhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence            9999999999999999887777876653 6799999999999965 6778899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 028686          158 FFSIARDIKQRL  169 (205)
Q Consensus       158 ~~~i~~~~~~~~  169 (205)
                      |..+...+.+.+
T Consensus       167 f~~l~~rl~~pq  178 (198)
T KOG3883|consen  167 FTYLASRLHQPQ  178 (198)
T ss_pred             HHHHHHhccCCc
Confidence            999888765533

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.90  E-value=2.2e-22  Score=144.17  Aligned_cols=146  Identities=21%  Similarity=0.181  Sum_probs=106.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhh--------hhhhhcc
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------ITTAYYR   74 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~   74 (205)
                      ++|+++|++|+|||||++++.+.... ....++...++....+...+  ..+.+|||||..++..        .....+.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            58999999999999999999987642 22233333444444555554  5689999999754322        1234567


Q ss_pred             CCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCH
Q 028686           75 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV  154 (205)
Q Consensus        75 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  154 (205)
                      .+|++++|+|++++.+......|..      ..+.|+++|+||+|+.+....        .....+.+++++||+++.|+
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~--------~~~~~~~~~~~~Sa~~~~~v  145 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL--------LSLLAGKPIIAISAKTGEGL  145 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc--------ccccCCCceEEEECCCCCCH
Confidence            8999999999999887776654433      246899999999998653221        23444578999999999999


Q ss_pred             HHHHHHHHHHH
Q 028686          155 EQVFFSIARDI  165 (205)
Q Consensus       155 ~~~~~~i~~~~  165 (205)
                      ++++++|.+.+
T Consensus       146 ~~l~~~l~~~~  156 (157)
T cd04164         146 DELKEALLELA  156 (157)
T ss_pred             HHHHHHHHHhh
Confidence            99999988754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.90  E-value=4.2e-23  Score=142.26  Aligned_cols=164  Identities=22%  Similarity=0.469  Sum_probs=143.4

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .++|.++|++..|||||+-.+.++.+++++..+.|..+..+.+.+.+.++.+.+||.+|++++..+.+....++-+++|+
T Consensus        20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFm   99 (205)
T KOG1673|consen   20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFM   99 (205)
T ss_pred             EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEE
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC----CCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD----ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF  158 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  158 (205)
                      ||++.++++..+..|+...+..+...+| |+||+|.|+.    .+..+-...+++.+++-.++++|++|+....|+..+|
T Consensus       100 FDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIF  178 (205)
T KOG1673|consen  100 FDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIF  178 (205)
T ss_pred             EecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHH
Confidence            9999999999999999999887765555 5689999952    2111222344677788888999999999999999999


Q ss_pred             HHHHHHHHH
Q 028686          159 FSIARDIKQ  167 (205)
Q Consensus       159 ~~i~~~~~~  167 (205)
                      ..++..+..
T Consensus       179 K~vlAklFn  187 (205)
T KOG1673|consen  179 KIVLAKLFN  187 (205)
T ss_pred             HHHHHHHhC
Confidence            998887754

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.90  E-value=6.7e-23  Score=145.55  Aligned_cols=148  Identities=18%  Similarity=0.188  Sum_probs=106.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhh------hhhhhhhc--cC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF------RTITTAYY--RG   75 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------~~~~~~~~--~~   75 (205)
                      |+|+++|.||||||||+|+|.+.+......|..+.+.....+.+.+  ..+.++|+||....      ......++  ..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            6899999999999999999999986555566666677777777777  56899999995432      22233343  58


Q ss_pred             CcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHH
Q 028686           76 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE  155 (205)
Q Consensus        76 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  155 (205)
                      .|++++|+|+++.+.-   ..+...+..   .++|+++++||+|.....  -..-+...+.+.++++++.+||++++|++
T Consensus        79 ~D~ii~VvDa~~l~r~---l~l~~ql~e---~g~P~vvvlN~~D~a~~~--g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~  150 (156)
T PF02421_consen   79 PDLIIVVVDATNLERN---LYLTLQLLE---LGIPVVVVLNKMDEAERK--GIEIDAEKLSERLGVPVIPVSARTGEGID  150 (156)
T ss_dssp             SSEEEEEEEGGGHHHH---HHHHHHHHH---TTSSEEEEEETHHHHHHT--TEEE-HHHHHHHHTS-EEEEBTTTTBTHH
T ss_pred             CCEEEEECCCCCHHHH---HHHHHHHHH---cCCCEEEEEeCHHHHHHc--CCEECHHHHHHHhCCCEEEEEeCCCcCHH
Confidence            9999999999885422   223344433   469999999999985422  22335677888899999999999999999


Q ss_pred             HHHHHH
Q 028686          156 QVFFSI  161 (205)
Q Consensus       156 ~~~~~i  161 (205)
                      ++++.|
T Consensus       151 ~L~~~I  156 (156)
T PF02421_consen  151 ELKDAI  156 (156)
T ss_dssp             HHHHHH
T ss_pred             HHHhhC
Confidence            999875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.90  E-value=7.3e-23  Score=149.60  Aligned_cols=155  Identities=21%  Similarity=0.208  Sum_probs=106.3

Q ss_pred             EECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh----hhhh---hhhhccCCcEEE
Q 028686            8 YFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTI---TTAYYRGAMGIL   80 (205)
Q Consensus         8 v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~---~~~~~~~~d~~i   80 (205)
                      ++|++|||||||+++|.+........+....+.....+.++. ...+.+||+||...    .+.+   ....++.+|+++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii   79 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL   79 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence            589999999999999999864211112122223333344441 35689999999742    1222   233467899999


Q ss_pred             EEEeCCCh------hHHHHHHHHHHHHHhhcC-------CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEc
Q 028686           81 LVYDVTDE------SSFNNIRNWIRNIEQHAS-------DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETS  147 (205)
Q Consensus        81 ~v~d~~~~------~s~~~~~~~~~~i~~~~~-------~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S  147 (205)
                      +|+|++++      .+++++..|...+.....       .+.|+++|+||+|+... ...............+..++++|
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~S  158 (176)
T cd01881          80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA-EELEEELVRELALEEGAEVVPIS  158 (176)
T ss_pred             EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch-hHHHHHHHHHHhcCCCCCEEEEe
Confidence            99999988      578888878777765432       36899999999998642 22222212233444567899999


Q ss_pred             CCCCCCHHHHHHHHHHH
Q 028686          148 AKTNLNVEQVFFSIARD  164 (205)
Q Consensus       148 a~~~~gi~~~~~~i~~~  164 (205)
                      |+++.|++++++++.+.
T Consensus       159 a~~~~gl~~l~~~l~~~  175 (176)
T cd01881         159 AKTEEGLDELIRAIYEL  175 (176)
T ss_pred             hhhhcCHHHHHHHHHhh
Confidence            99999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.90  E-value=1.1e-22  Score=169.82  Aligned_cols=162  Identities=22%  Similarity=0.168  Sum_probs=115.8

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCCh----------hhhhhhh-h
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ----------ERFRTIT-T   70 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~-~   70 (205)
                      .++|+++|.+|+|||||+++|++.... ....++++.+.....+.+++..  +.+|||||.          +.+..+. .
T Consensus       211 ~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~~  288 (472)
T PRK03003        211 PRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRTH  288 (472)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHHH
Confidence            479999999999999999999998742 3444555556666667777754  679999995          3333332 3


Q ss_pred             hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC-ccCHHHHHH-HHHHhCCcEEEEcC
Q 028686           71 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-AVPTSKGQA-LADEYGIKFFETSA  148 (205)
Q Consensus        71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~-~~~~~~~~~-~~~~~~~~~~~~Sa  148 (205)
                      .+++.+|++++|+|++++.++.++. ++..+..   .+.|+++|+||+|+.+... ....+++.. +.....++++++||
T Consensus       289 ~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SA  364 (472)
T PRK03003        289 AAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISA  364 (472)
T ss_pred             HHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEEC
Confidence            4578999999999999988877763 3444433   4689999999999964211 111122222 22222378999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhc
Q 028686          149 KTNLNVEQVFFSIARDIKQRLA  170 (205)
Q Consensus       149 ~~~~gi~~~~~~i~~~~~~~~~  170 (205)
                      ++|.|++++|+.+.+.+.....
T Consensus       365 k~g~gv~~lf~~i~~~~~~~~~  386 (472)
T PRK03003        365 KTGRAVDKLVPALETALESWDT  386 (472)
T ss_pred             CCCCCHHHHHHHHHHHHHHhcc
Confidence            9999999999999988765544

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.90  E-value=1.7e-22  Score=149.18  Aligned_cols=155  Identities=19%  Similarity=0.120  Sum_probs=110.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCccc----------------ceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhh
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTSFIT----------------TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI   68 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~----------------t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   68 (205)
                      +|+++|.+|+|||||+++|++........+                ....+.....+...  ...+.+||+||..++...
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~   78 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE   78 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence            589999999999999999998875443311                11222222233333  467999999999988888


Q ss_pred             hhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC-CCccCHHHHHHHHHH---------
Q 028686           69 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES-KRAVPTSKGQALADE---------  138 (205)
Q Consensus        69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~-~~~~~~~~~~~~~~~---------  138 (205)
                      +..+++.+|++++|+|+.++.+... ..++..+..   .+.|+++++||+|+... ......+++.+....         
T Consensus        79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (189)
T cd00881          79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE  154 (189)
T ss_pred             HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence            8888999999999999987654432 233333333   46999999999998642 112223334443332         


Q ss_pred             -----hCCcEEEEcCCCCCCHHHHHHHHHHHH
Q 028686          139 -----YGIKFFETSAKTNLNVEQVFFSIARDI  165 (205)
Q Consensus       139 -----~~~~~~~~Sa~~~~gi~~~~~~i~~~~  165 (205)
                           ...+++++||++|.|++++++++.+.+
T Consensus       155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence                 347899999999999999999998875

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.90  E-value=7.1e-22  Score=161.33  Aligned_cols=161  Identities=16%  Similarity=0.175  Sum_probs=116.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh----hhhhhhhh---ccCC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTAY---YRGA   76 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~~~   76 (205)
                      -.|+|+|.||||||||+++|++.+......|.++.....-.+.++. ...+.+||+||...    ...+...+   +.++
T Consensus       159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~  237 (424)
T PRK12297        159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT  237 (424)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence            4789999999999999999998774322222222222222333331 25689999999632    22333333   4569


Q ss_pred             cEEEEEEeCCCh---hHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCC
Q 028686           77 MGILLVYDVTDE---SSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN  151 (205)
Q Consensus        77 d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  151 (205)
                      +++++|+|+++.   +++++...|.+.+..+..  .+.|++||+||+|+..     ..+.+..+.+.++.+++++||+++
T Consensus       238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~-----~~e~l~~l~~~l~~~i~~iSA~tg  312 (424)
T PRK12297        238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE-----AEENLEEFKEKLGPKVFPISALTG  312 (424)
T ss_pred             CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC-----CHHHHHHHHHHhCCcEEEEeCCCC
Confidence            999999999864   678888888888876543  4689999999999843     134556667777788999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhc
Q 028686          152 LNVEQVFFSIARDIKQRLA  170 (205)
Q Consensus       152 ~gi~~~~~~i~~~~~~~~~  170 (205)
                      .|++++++++.+.+.+...
T Consensus       313 eGI~eL~~~L~~~l~~~~~  331 (424)
T PRK12297        313 QGLDELLYAVAELLEETPE  331 (424)
T ss_pred             CCHHHHHHHHHHHHHhCcc
Confidence            9999999999988866543

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.89  E-value=1.7e-22  Score=145.57  Aligned_cols=141  Identities=20%  Similarity=0.191  Sum_probs=100.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChh-----hhhhhhhhhccCCcEE
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE-----RFRTITTAYYRGAMGI   79 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~~~~~~~~d~~   79 (205)
                      +|+++|.+|+|||||+++|.+...  ...++.+       +.+...    .+||+||..     .+..+. ..+..+|++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~--~~~~~~~-------v~~~~~----~~iDtpG~~~~~~~~~~~~~-~~~~~ad~i   68 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYT--LARKTQA-------VEFNDK----GDIDTPGEYFSHPRWYHALI-TTLQDVDML   68 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCc--cCccceE-------EEECCC----CcccCCccccCCHHHHHHHH-HHHhcCCEE
Confidence            799999999999999999876531  1122222       122221    269999973     222222 336789999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC--cEEEEcCCCCCCHHHH
Q 028686           80 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI--KFFETSAKTNLNVEQV  157 (205)
Q Consensus        80 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~~  157 (205)
                      ++|+|+++.+++..  .|+..+    ..+.|+++++||.|+.+    ...+...+++.+.+.  +++++||+++.|++++
T Consensus        69 l~v~d~~~~~s~~~--~~~~~~----~~~~~ii~v~nK~Dl~~----~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l  138 (158)
T PRK15467         69 IYVHGANDPESRLP--AGLLDI----GVSKRQIAVISKTDMPD----ADVAATRKLLLETGFEEPIFELNSHDPQSVQQL  138 (158)
T ss_pred             EEEEeCCCcccccC--HHHHhc----cCCCCeEEEEEccccCc----ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHH
Confidence            99999998876632  343333    13579999999999854    235666777777774  8999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 028686          158 FFSIARDIKQRL  169 (205)
Q Consensus       158 ~~~i~~~~~~~~  169 (205)
                      |+++.+.+.+.+
T Consensus       139 ~~~l~~~~~~~~  150 (158)
T PRK15467        139 VDYLASLTKQEE  150 (158)
T ss_pred             HHHHHHhchhhh
Confidence            999988776544

>cd01889 SelB_euk SelB subfamily

Probab=99.89  E-value=2.1e-22  Score=149.71  Aligned_cols=159  Identities=16%  Similarity=0.080  Sum_probs=103.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC----CCCCC---cc--cceeeEEEEEEEE----------ECCEEEEEEEEeCCChhh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG----SFTTS---FI--TTIGIDFKIRTIE----------LDGKRIKLQIWDTAGQER   64 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~----~~~~~---~~--~t~~~~~~~~~~~----------~~~~~~~~~i~D~~g~~~   64 (205)
                      ++|+++|++++|||||+++|+..    .+...   ..  .|.+..+....+.          ..+....+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999873    12111   11  2333333333332          123357899999999976


Q ss_pred             hhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC-CccCHHHHHHHH-H-----
Q 028686           65 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK-RAVPTSKGQALA-D-----  137 (205)
Q Consensus        65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-~~~~~~~~~~~~-~-----  137 (205)
                      +..........+|++++|+|+++.........+.  +...  .+.|+++++||+|+.... .....+++.+.. .     
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~  156 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT  156 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            5444444456789999999998744333222222  1122  257999999999986321 111223332221 1     


Q ss_pred             -HhCCcEEEEcCCCCCCHHHHHHHHHHHHH
Q 028686          138 -EYGIKFFETSAKTNLNVEQVFFSIARDIK  166 (205)
Q Consensus       138 -~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~  166 (205)
                       ..+++++++||++|.|++++++++..++.
T Consensus       157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             CcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence             13578999999999999999999988764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.89  E-value=2.5e-22  Score=166.39  Aligned_cols=148  Identities=25%  Similarity=0.201  Sum_probs=112.4

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhh--------hhhhc
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTAYY   73 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~   73 (205)
                      .++|+++|.+|+|||||+|+|++.... ....+..+.++....+.+++  ..+.+|||||..++...        ...++
T Consensus       215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~  292 (449)
T PRK05291        215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREAI  292 (449)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence            479999999999999999999987642 33344445566667777776  56899999998654322        22357


Q ss_pred             cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCC
Q 028686           74 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN  153 (205)
Q Consensus        74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  153 (205)
                      ..+|++++|+|++++.++++...|..      ..+.|+++|+||+|+.+.. ..  .      ...+.+++++||++|.|
T Consensus       293 ~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~-~~--~------~~~~~~~i~iSAktg~G  357 (449)
T PRK05291        293 EEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEI-DL--E------EENGKPVIRISAKTGEG  357 (449)
T ss_pred             HhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccc-hh--h------hccCCceEEEEeeCCCC
Confidence            88999999999999888776544433      2468999999999996421 11  1      33456899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 028686          154 VEQVFFSIARDIKQ  167 (205)
Q Consensus       154 i~~~~~~i~~~~~~  167 (205)
                      ++++++++.+.+..
T Consensus       358 I~~L~~~L~~~l~~  371 (449)
T PRK05291        358 IDELREAIKELAFG  371 (449)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998864

>TIGR00436 era GTP-binding protein Era

Probab=99.89  E-value=5.8e-22  Score=154.66  Aligned_cols=153  Identities=18%  Similarity=0.062  Sum_probs=104.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCC--CcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh--------hhhhhhcc
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTT--SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR--------TITTAYYR   74 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~~   74 (205)
                      +|+++|.||||||||+|+|++.++..  ....|+. +........++  ..+.+|||||.....        ......+.
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr-~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~   78 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTR-NRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIG   78 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCccc-CcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHh
Confidence            68999999999999999999987532  2222332 22222222222  468999999965321        12345678


Q ss_pred             CCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC-cEEEEcCCCCCC
Q 028686           75 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLN  153 (205)
Q Consensus        75 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g  153 (205)
                      .+|++++|+|+++..+..  ..++..+..   .+.|+++|+||+|+.+  .....+....+....+. +++++||++|.|
T Consensus        79 ~aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~--~~~~~~~~~~~~~~~~~~~v~~iSA~~g~g  151 (270)
T TIGR00436        79 GVDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKF--KDKLLPLIDKYAILEDFKDIVPISALTGDN  151 (270)
T ss_pred             hCCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCC--HHHHHHHHHHHHhhcCCCceEEEecCCCCC
Confidence            999999999999876654  334444443   3589999999999853  22222334444444443 799999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 028686          154 VEQVFFSIARDIKQ  167 (205)
Q Consensus       154 i~~~~~~i~~~~~~  167 (205)
                      ++++++++.+.+.+
T Consensus       152 i~~L~~~l~~~l~~  165 (270)
T TIGR00436       152 TSFLAAFIEVHLPE  165 (270)
T ss_pred             HHHHHHHHHHhCCC
Confidence            99999999887644

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.89  E-value=6.4e-22  Score=168.47  Aligned_cols=157  Identities=21%  Similarity=0.310  Sum_probs=116.1

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCC-------CCCCcccc------eeeEEEEEEE--EE---CCEEEEEEEEeCCChhh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGS-------FTTSFITT------IGIDFKIRTI--EL---DGKRIKLQIWDTAGQER   64 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~-------~~~~~~~t------~~~~~~~~~~--~~---~~~~~~~~i~D~~g~~~   64 (205)
                      .-+|+++|..++|||||+++|+...       +...+..+      .|.++....+  .+   ++..+.+.+|||||+.+
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            3589999999999999999998752       11222211      2444443333  22   46678999999999999


Q ss_pred             hhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC---
Q 028686           65 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI---  141 (205)
Q Consensus        65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---  141 (205)
                      |...+..+++.+|++|+|+|+++..++.....|...+.    .++|+++|+||+|+.+..   ..+...++...++.   
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~---~~~~~~el~~~lg~~~~  155 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD---PERVKKEIEEVIGLDAS  155 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC---HHHHHHHHHHHhCCCcc
Confidence            99999999999999999999998766666555554432    368999999999985421   12233455555665   


Q ss_pred             cEEEEcCCCCCCHHHHHHHHHHHHH
Q 028686          142 KFFETSAKTNLNVEQVFFSIARDIK  166 (205)
Q Consensus       142 ~~~~~Sa~~~~gi~~~~~~i~~~~~  166 (205)
                      .++++||++|.|++++|++|.+.+.
T Consensus       156 ~vi~vSAktG~GI~~Lle~I~~~lp  180 (595)
T TIGR01393       156 EAILASAKTGIGIEEILEAIVKRVP  180 (595)
T ss_pred             eEEEeeccCCCCHHHHHHHHHHhCC
Confidence            4899999999999999999988763

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.89  E-value=1.1e-21  Score=162.14  Aligned_cols=165  Identities=15%  Similarity=0.124  Sum_probs=114.3

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh----hhhh---hhhhccC
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTI---TTAYYRG   75 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~---~~~~~~~   75 (205)
                      ...|+|+|.||||||||+++|.+.+......|.++.+...-.+.+.+  ..+.+||+||...    ...+   ....+.+
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier  236 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER  236 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence            35799999999999999999998765432223233333334445544  5799999999531    1112   2234577


Q ss_pred             CcEEEEEEeCCC----hhHHHHHHHHHHHHHhhc-----------CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC
Q 028686           76 AMGILLVYDVTD----ESSFNNIRNWIRNIEQHA-----------SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG  140 (205)
Q Consensus        76 ~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~-----------~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~  140 (205)
                      ++++++|+|+++    ++.++++..|..++..+.           ..+.|++||+||+|+++. .. ..+.........+
T Consensus       237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da-~e-l~e~l~~~l~~~g  314 (500)
T PRK12296        237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA-RE-LAEFVRPELEARG  314 (500)
T ss_pred             cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh-HH-HHHHHHHHHHHcC
Confidence            999999999985    345666666666665443           136899999999999642 11 2223333344557


Q ss_pred             CcEEEEcCCCCCCHHHHHHHHHHHHHHHhcc
Q 028686          141 IKFFETSAKTNLNVEQVFFSIARDIKQRLAD  171 (205)
Q Consensus       141 ~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~~  171 (205)
                      ++++++||+++.|+++++++|.+.+...+..
T Consensus       315 ~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~~  345 (500)
T PRK12296        315 WPVFEVSAASREGLRELSFALAELVEEARAA  345 (500)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhhhcc
Confidence            8999999999999999999999998776543

>PRK11058 GTPase HflX; Provisional

Probab=99.89  E-value=1e-21  Score=161.13  Aligned_cols=158  Identities=22%  Similarity=0.173  Sum_probs=112.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh--hhhhhhh------hccC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--FRTITTA------YYRG   75 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~~------~~~~   75 (205)
                      .+|+++|.+|||||||+|+|.+........+..+.+.....+.+.+. ..+.+|||+|..+  ...++..      .+..
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~  276 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ  276 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence            57999999999999999999987754333333344444445555442 2578999999743  1222333      3578


Q ss_pred             CcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCc-EEEEcCCCCCCH
Q 028686           76 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIK-FFETSAKTNLNV  154 (205)
Q Consensus        76 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi  154 (205)
                      +|++++|+|++++.+++.+..|...+......+.|+++|+||+|+.+. ..   ....  ....+.+ ++++||++|.|+
T Consensus       277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~-~~---~~~~--~~~~~~~~~v~ISAktG~GI  350 (426)
T PRK11058        277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDD-FE---PRID--RDEENKPIRVWLSAQTGAGI  350 (426)
T ss_pred             CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCc-hh---HHHH--HHhcCCCceEEEeCCCCCCH
Confidence            999999999999988888766666665544457999999999998532 11   1111  1123444 588999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 028686          155 EQVFFSIARDIKQR  168 (205)
Q Consensus       155 ~~~~~~i~~~~~~~  168 (205)
                      +++++++.+.+...
T Consensus       351 deL~e~I~~~l~~~  364 (426)
T PRK11058        351 PLLFQALTERLSGE  364 (426)
T ss_pred             HHHHHHHHHHhhhc
Confidence            99999999988543

>cd01894 EngA1 EngA1 subfamily

Probab=99.89  E-value=5.2e-22  Score=142.33  Aligned_cols=145  Identities=20%  Similarity=0.133  Sum_probs=100.4

Q ss_pred             EEECCCCCcHHHHHHHHHhCCC--CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhh--------hhhhhccCC
Q 028686            7 IYFERGGVGKSCLLLRFSDGSF--TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------ITTAYYRGA   76 (205)
Q Consensus         7 ~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~   76 (205)
                      +++|.+|+|||||+++|++...  .....+ .+.+........++  ..+.+|||||...+..        .....++.+
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~-~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~   77 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPG-VTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEA   77 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCC-ceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC
Confidence            4799999999999999998752  223322 23334444455555  5689999999876443        334567889


Q ss_pred             cEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC-cEEEEcCCCCCCHH
Q 028686           77 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVE  155 (205)
Q Consensus        77 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~  155 (205)
                      |++++|+|..+..+.... .+...+..   .+.|+++|+||+|+.+...     . .......+. +++++|++++.|++
T Consensus        78 d~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~-----~-~~~~~~~~~~~~~~~Sa~~~~gv~  147 (157)
T cd01894          78 DVILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEED-----E-AAEFYSLGFGEPIPISAEHGRGIG  147 (157)
T ss_pred             CEEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHH-----H-HHHHHhcCCCCeEEEecccCCCHH
Confidence            999999999875444332 12233322   3589999999999865211     1 222334455 78999999999999


Q ss_pred             HHHHHHHHH
Q 028686          156 QVFFSIARD  164 (205)
Q Consensus       156 ~~~~~i~~~  164 (205)
                      ++|+++.+.
T Consensus       148 ~l~~~l~~~  156 (157)
T cd01894         148 DLLDAILEL  156 (157)
T ss_pred             HHHHHHHhh
Confidence            999999875

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK15494 era GTPase Era; Provisional

Probab=99.89  E-value=1.5e-21  Score=156.54  Aligned_cols=156  Identities=21%  Similarity=0.214  Sum_probs=107.8

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCC-cccceeeEEEEEEEEECCEEEEEEEEeCCChhh-hhhhh-------hhhc
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTS-FITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRTIT-------TAYY   73 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~-------~~~~   73 (205)
                      .++|+++|.+|||||||+|+|++..+... ..+.++.+.....+..++  ..+.+|||||... +..+.       ...+
T Consensus        52 ~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l  129 (339)
T PRK15494         52 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWSSL  129 (339)
T ss_pred             eeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence            36899999999999999999998876421 112222334444555555  4689999999842 22221       2346


Q ss_pred             cCCcEEEEEEeCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC--CcEEEEcCCC
Q 028686           74 RGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG--IKFFETSAKT  150 (205)
Q Consensus        74 ~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~  150 (205)
                      ..+|++++|+|..+  ++.... .|++.+...   +.|.++|+||+|+.+.    ...++.+++....  ..++++||++
T Consensus       130 ~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~----~~~~~~~~l~~~~~~~~i~~iSAkt  200 (339)
T PRK15494        130 HSADLVLLIIDSLK--SFDDITHNILDKLRSL---NIVPIFLLNKIDIESK----YLNDIKAFLTENHPDSLLFPISALS  200 (339)
T ss_pred             hhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc----cHHHHHHHHHhcCCCcEEEEEeccC
Confidence            78999999999765  444443 355555432   4677899999998531    2345555555443  5799999999


Q ss_pred             CCCHHHHHHHHHHHHHHHh
Q 028686          151 NLNVEQVFFSIARDIKQRL  169 (205)
Q Consensus       151 ~~gi~~~~~~i~~~~~~~~  169 (205)
                      |.|++++|++|.+.+.+..
T Consensus       201 g~gv~eL~~~L~~~l~~~~  219 (339)
T PRK15494        201 GKNIDGLLEYITSKAKISP  219 (339)
T ss_pred             ccCHHHHHHHHHHhCCCCC
Confidence            9999999999988765543

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.88  E-value=1.3e-21  Score=165.88  Aligned_cols=149  Identities=19%  Similarity=0.192  Sum_probs=112.8

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      ..+|+++|++++|||||+++|.+..+.....++++.+.....+.+++. ..+.+|||||+++|..++...+..+|++|+|
T Consensus        87 ~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaILV  165 (587)
T TIGR00487        87 PPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVLV  165 (587)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEEE
Confidence            468999999999999999999998877666565655665556666432 2689999999999999999899999999999


Q ss_pred             EeCCC---hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHh-------C--CcEEEEcCCC
Q 028686           83 YDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-------G--IKFFETSAKT  150 (205)
Q Consensus        83 ~d~~~---~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~  150 (205)
                      +|+++   +++.+.+       ......++|+++++||+|+.+.    ..+++.......       +  .+++++||++
T Consensus       166 Vda~dgv~~qT~e~i-------~~~~~~~vPiIVviNKiDl~~~----~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAkt  234 (587)
T TIGR00487       166 VAADDGVMPQTIEAI-------SHAKAANVPIIVAINKIDKPEA----NPDRVKQELSEYGLVPEDWGGDTIFVPVSALT  234 (587)
T ss_pred             EECCCCCCHhHHHHH-------HHHHHcCCCEEEEEECcccccC----CHHHHHHHHHHhhhhHHhcCCCceEEEEECCC
Confidence            99986   3444332       2222246999999999998642    223333333222       2  4799999999


Q ss_pred             CCCHHHHHHHHHH
Q 028686          151 NLNVEQVFFSIAR  163 (205)
Q Consensus       151 ~~gi~~~~~~i~~  163 (205)
                      |.|++++|+++..
T Consensus       235 GeGI~eLl~~I~~  247 (587)
T TIGR00487       235 GDGIDELLDMILL  247 (587)
T ss_pred             CCChHHHHHhhhh
Confidence            9999999999874

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd01895 EngA2 EngA2 subfamily

Probab=99.88  E-value=3e-21  Score=140.37  Aligned_cols=155  Identities=25%  Similarity=0.191  Sum_probs=103.7

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhh----------hhh-hh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF----------RTI-TT   70 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----------~~~-~~   70 (205)
                      .++|+++|.+|+|||||+++|.+.... ....+..........+..++  ..+.+||+||....          ... ..
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence            579999999999999999999987632 22223333333334455555  34789999996432          111 12


Q ss_pred             hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHH-HHHHHHHh----CCcEEE
Q 028686           71 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK-GQALADEY----GIKFFE  145 (205)
Q Consensus        71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~-~~~~~~~~----~~~~~~  145 (205)
                      ..+..+|++++|+|++++.+..... +...+..   .+.|+++++||+|+.+.... ..++ ...+.+.+    ..++++
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  154 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDLR-IAGLILE---EGKALVIVVNKWDLVEKDSK-TMKEFKKEIRRKLPFLDYAPIVF  154 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh---cCCCEEEEEeccccCCccHH-HHHHHHHHHHhhcccccCCceEE
Confidence            3467899999999999887655432 2333222   35899999999998653211 1222 22233333    368999


Q ss_pred             EcCCCCCCHHHHHHHHHHH
Q 028686          146 TSAKTNLNVEQVFFSIARD  164 (205)
Q Consensus       146 ~Sa~~~~gi~~~~~~i~~~  164 (205)
                      +||+++.|++++++++.+.
T Consensus       155 ~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         155 ISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             EeccCCCCHHHHHHHHHHh
Confidence            9999999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=2.1e-22  Score=143.22  Aligned_cols=164  Identities=27%  Similarity=0.542  Sum_probs=142.7

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .++++++|+.|.||||++++.+.+++...+.+|+|..........+...+++..|||.|++.+..+...++-.+..+||+
T Consensus        10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiim   89 (216)
T KOG0096|consen   10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIM   89 (216)
T ss_pred             eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEE
Confidence            57899999999999999999999999999999999999888877766679999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||++.+-++.++..|...+.+.+ .++||+++|||.|.....   .......+-...++.|+++|++++.|++..|.|+.
T Consensus        90 FdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~r~---~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~La  165 (216)
T KOG0096|consen   90 FDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKARK---VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLA  165 (216)
T ss_pred             eeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceeccccc---cccccceeeecccceeEEeecccccccccchHHHh
Confidence            99999999999999999998887 469999999999974321   22233334455678999999999999999999999


Q ss_pred             HHHHHHhc
Q 028686          163 RDIKQRLA  170 (205)
Q Consensus       163 ~~~~~~~~  170 (205)
                      +.+.....
T Consensus       166 rKl~G~p~  173 (216)
T KOG0096|consen  166 RKLTGDPS  173 (216)
T ss_pred             hhhcCCCC
Confidence            98866433

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.88  E-value=3.9e-21  Score=159.34  Aligned_cols=159  Identities=24%  Similarity=0.141  Sum_probs=110.0

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhh-----------hh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-----------TT   70 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~~   70 (205)
                      .++|+++|.+|+|||||+++|++.... ....+.+..+.....+..++.  .+.+|||||..+....           ..
T Consensus       172 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~~~  249 (429)
T TIGR03594       172 PIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLRTL  249 (429)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHHHH
Confidence            479999999999999999999987632 222333334444455555554  6899999996443221           13


Q ss_pred             hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHH-HHHHH----hCCcEEE
Q 028686           71 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ-ALADE----YGIKFFE  145 (205)
Q Consensus        71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~-~~~~~----~~~~~~~  145 (205)
                      ..++.+|++++|+|++++.+..+.. ++..+..   .+.|+++|+||+|+.+ +. ...++.. .+...    ..+++++
T Consensus       250 ~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~-~~-~~~~~~~~~~~~~~~~~~~~~vi~  323 (429)
T TIGR03594       250 KAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVK-DE-KTREEFKKELRRKLPFLDFAPIVF  323 (429)
T ss_pred             HHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCC-CH-HHHHHHHHHHHHhcccCCCCceEE
Confidence            4678999999999999877665542 3333332   4689999999999962 11 1122222 22222    2378999


Q ss_pred             EcCCCCCCHHHHHHHHHHHHHHHh
Q 028686          146 TSAKTNLNVEQVFFSIARDIKQRL  169 (205)
Q Consensus       146 ~Sa~~~~gi~~~~~~i~~~~~~~~  169 (205)
                      +||++|.|++++|+++.+.+....
T Consensus       324 ~SA~~g~~v~~l~~~i~~~~~~~~  347 (429)
T TIGR03594       324 ISALTGQGVDKLLDAIDEVYENAN  347 (429)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHhc
Confidence            999999999999999998876554

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=3.7e-22  Score=140.05  Aligned_cols=159  Identities=19%  Similarity=0.306  Sum_probs=125.7

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCC-------CCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccC
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGS-------FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG   75 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   75 (205)
                      .+.|+++|..++|||||+.++....       .+....+|.|.......+.    ...+.+||.+|++..+++|..|+..
T Consensus        17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~----~~~l~fwdlgGQe~lrSlw~~yY~~   92 (197)
T KOG0076|consen   17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVC----NAPLSFWDLGGQESLRSLWKKYYWL   92 (197)
T ss_pred             hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeec----cceeEEEEcCChHHHHHHHHHHHHH
Confidence            3678999999999999999875321       2244567777666655553    3679999999999999999999999


Q ss_pred             CcEEEEEEeCCChhHHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH------HhCCcEEEEcC
Q 028686           76 AMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALAD------EYGIKFFETSA  148 (205)
Q Consensus        76 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa  148 (205)
                      ++++|+++|+++++-|+.-...++.+.. ....++|+++.+||.|+.+.   ...+++.....      ....++..+||
T Consensus        93 ~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~---~~~~El~~~~~~~e~~~~rd~~~~pvSa  169 (197)
T KOG0076|consen   93 AHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA---MEAAELDGVFGLAELIPRRDNPFQPVSA  169 (197)
T ss_pred             hceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh---hhHHHHHHHhhhhhhcCCccCccccchh
Confidence            9999999999999999988776666543 33478999999999998542   34444443332      22378999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHH
Q 028686          149 KTNLNVEQVFFSIARDIKQR  168 (205)
Q Consensus       149 ~~~~gi~~~~~~i~~~~~~~  168 (205)
                      .+|+||++..+|+...+..+
T Consensus       170 l~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  170 LTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hhcccHHHHHHHHHHHHhhc
Confidence            99999999999999998876

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.88  E-value=4.5e-21  Score=163.15  Aligned_cols=156  Identities=19%  Similarity=0.213  Sum_probs=118.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCC---CCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGS---FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   80 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   80 (205)
                      +.|+++|.+++|||||+++|.+..   +..++.++++.++....+.+++  ..+.+||+||+++|.......+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            478999999999999999999743   4445556666677666677766  67999999999999888888899999999


Q ss_pred             EEEeCCC---hhHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCC-ccCHHHHHHHHHHh----CCcEEEEcCCCC
Q 028686           81 LVYDVTD---ESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR-AVPTSKGQALADEY----GIKFFETSAKTN  151 (205)
Q Consensus        81 ~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~Dl~~~~~-~~~~~~~~~~~~~~----~~~~~~~Sa~~~  151 (205)
                      +|+|+++   +++++.+.    .+..   .++| +++|+||+|+.+.+. ....+++..+....    +++++++||++|
T Consensus        79 LVVDa~~G~~~qT~ehl~----il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG  151 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHLA----VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG  151 (581)
T ss_pred             EEEECCCCCcHHHHHHHH----HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence            9999998   56665542    2221   3577 999999999965221 11234455555544    478999999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q 028686          152 LNVEQVFFSIARDIKQR  168 (205)
Q Consensus       152 ~gi~~~~~~i~~~~~~~  168 (205)
                      .|++++++++...+...
T Consensus       152 ~GI~eL~~~L~~l~~~~  168 (581)
T TIGR00475       152 QGIGELKKELKNLLESL  168 (581)
T ss_pred             CCchhHHHHHHHHHHhC
Confidence            99999999987776543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.87  E-value=7.3e-21  Score=142.45  Aligned_cols=117  Identities=15%  Similarity=0.337  Sum_probs=89.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCC-cEEEEEE
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA-MGILLVY   83 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~-d~~i~v~   83 (205)
                      +|+++|++|||||+|+++|....+...+.++ ...+........+....+.+||+||+.+++..+..+++.+ +++|||+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence            5899999999999999999998876665443 2233322222223456799999999999998888899998 9999999


Q ss_pred             eCCCh-hHHHHHHHHHHHHHhh---cCCCCcEEEEEeCCCCCC
Q 028686           84 DVTDE-SSFNNIRNWIRNIEQH---ASDNVNKVLVGNKADMDE  122 (205)
Q Consensus        84 d~~~~-~s~~~~~~~~~~i~~~---~~~~~piiiv~nK~Dl~~  122 (205)
                      |..+. +++..+..|+..+...   ..+++|++|++||+|+..
T Consensus        81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence            99997 6777776665544322   225799999999999864

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.87  E-value=3.3e-21  Score=167.18  Aligned_cols=153  Identities=19%  Similarity=0.211  Sum_probs=112.8

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      ...|+++|..++|||||+++|.+..+.....+.+..+.....+.+++  ..+.||||||++.|..++...+..+|++|+|
T Consensus       290 ~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaILV  367 (787)
T PRK05306        290 PPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVVLV  367 (787)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEEEE
Confidence            46799999999999999999998877655555555455555566655  5689999999999999999889999999999


Q ss_pred             EeCCC---hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHH---HHHHhC--CcEEEEcCCCCCCH
Q 028686           83 YDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQA---LADEYG--IKFFETSAKTNLNV  154 (205)
Q Consensus        83 ~d~~~---~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~---~~~~~~--~~~~~~Sa~~~~gi  154 (205)
                      ||+++   +++++.+       ......++|++|++||+|+.+.+......++..   +...++  ++++++||++|.|+
T Consensus       368 VdAddGv~~qT~e~i-------~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI  440 (787)
T PRK05306        368 VAADDGVMPQTIEAI-------NHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGI  440 (787)
T ss_pred             EECCCCCCHhHHHHH-------HHHHhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence            99987   4444332       222235699999999999964221111111111   122333  78999999999999


Q ss_pred             HHHHHHHHHH
Q 028686          155 EQVFFSIARD  164 (205)
Q Consensus       155 ~~~~~~i~~~  164 (205)
                      +++|++|...
T Consensus       441 ~eLle~I~~~  450 (787)
T PRK05306        441 DELLEAILLQ  450 (787)
T ss_pred             hHHHHhhhhh
Confidence            9999998764

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.87  E-value=2.6e-21  Score=166.53  Aligned_cols=156  Identities=17%  Similarity=0.168  Sum_probs=111.6

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeE--EEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGID--FKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   80 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   80 (205)
                      ...|+++|..++|||||+++|....+.....++.+.+  .+...+..++....+.+|||||++.|..++...+..+|++|
T Consensus       244 ~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaI  323 (742)
T CHL00189        244 PPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAI  323 (742)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEE
Confidence            4689999999999999999999887654444333322  33333334445578999999999999999999999999999


Q ss_pred             EEEeCCC---hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHH---HHHhC--CcEEEEcCCCCC
Q 028686           81 LVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQAL---ADEYG--IKFFETSAKTNL  152 (205)
Q Consensus        81 ~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~---~~~~~--~~~~~~Sa~~~~  152 (205)
                      +|+|+++   +++++.+.    .+   ...++|+++++||+|+.+.......+++..+   ...++  ++++++||++|.
T Consensus       324 LVVDA~dGv~~QT~E~I~----~~---k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~  396 (742)
T CHL00189        324 LIIAADDGVKPQTIEAIN----YI---QAANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGT  396 (742)
T ss_pred             EEEECcCCCChhhHHHHH----HH---HhcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCC
Confidence            9999987   34444432    22   2246999999999998652211111111111   12233  689999999999


Q ss_pred             CHHHHHHHHHHHH
Q 028686          153 NVEQVFFSIARDI  165 (205)
Q Consensus       153 gi~~~~~~i~~~~  165 (205)
                      |++++|+++....
T Consensus       397 GIdeLle~I~~l~  409 (742)
T CHL00189        397 NIDKLLETILLLA  409 (742)
T ss_pred             CHHHHHHhhhhhh
Confidence            9999999988764

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.87  E-value=3.1e-21  Score=144.55  Aligned_cols=156  Identities=16%  Similarity=0.134  Sum_probs=100.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCC---CCccc--ceeeEEEEEEEE-----------------------EC--C----
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFT---TSFIT--TIGIDFKIRTIE-----------------------LD--G----   49 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~---~~~~~--t~~~~~~~~~~~-----------------------~~--~----   49 (205)
                      ++|+++|..|+|||||+..|.+...+   .+...  +....+......                       ..  +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            58999999999999999999765211   11111  111111111100                       00  1    


Q ss_pred             EEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCCh----hHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC
Q 028686           50 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR  125 (205)
Q Consensus        50 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~  125 (205)
                      ....+.+|||||++++...+...+..+|++++|+|++++    ++++.+    ..+...  ...|+++++||+|+.+...
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l----~~~~~~--~~~~iiivvNK~Dl~~~~~  154 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHL----AALEIM--GLKHIIIVQNKIDLVKEEQ  154 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHH----HHHHHc--CCCcEEEEEEchhccCHHH
Confidence            115789999999998888777788899999999999873    333333    222221  2247899999999864211


Q ss_pred             -ccCHHHHHHHHHHh---CCcEEEEcCCCCCCHHHHHHHHHHHH
Q 028686          126 -AVPTSKGQALADEY---GIKFFETSAKTNLNVEQVFFSIARDI  165 (205)
Q Consensus       126 -~~~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~~~~~i~~~~  165 (205)
                       ....++++++....   +++++++||++|.|++++|+++.+.+
T Consensus       155 ~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l  198 (203)
T cd01888         155 ALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI  198 (203)
T ss_pred             HHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence             11123344444432   57899999999999999999998654

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.87  E-value=6.4e-21  Score=141.92  Aligned_cols=158  Identities=18%  Similarity=0.167  Sum_probs=104.1

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCCh----------hhhhhhhhhh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ----------ERFRTITTAY   72 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~~~~   72 (205)
                      .++|+++|.+|+|||||+++|++..+...+.++.+.+.......+   ...+.+|||||.          +.+..+...+
T Consensus        24 ~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~  100 (196)
T PRK00454         24 GPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEY  100 (196)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHH
Confidence            478999999999999999999987654444455443332222222   257899999994          3444445555


Q ss_pred             ccCC---cEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC-ccCHHHHHHHHHHhCCcEEEEcC
Q 028686           73 YRGA---MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-AVPTSKGQALADEYGIKFFETSA  148 (205)
Q Consensus        73 ~~~~---d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa  148 (205)
                      ++.+   +++++|+|.+++.+.... .+...+. .  .+.|+++++||.|+.+... +...+++.........+++++||
T Consensus       101 ~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~-~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa  176 (196)
T PRK00454        101 LRTRENLKGVVLLIDSRHPLKELDL-QMIEWLK-E--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSS  176 (196)
T ss_pred             HHhCccceEEEEEEecCCCCCHHHH-HHHHHHH-H--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence            5544   678888888775433321 1122222 2  3589999999999854211 11123344444444678999999


Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q 028686          149 KTNLNVEQVFFSIARDIKQ  167 (205)
Q Consensus       149 ~~~~gi~~~~~~i~~~~~~  167 (205)
                      +++.|+++++++|.+.+.+
T Consensus       177 ~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        177 LKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             CCCCCHHHHHHHHHHHhcC
Confidence            9999999999999877653

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.87  E-value=8.3e-21  Score=157.60  Aligned_cols=174  Identities=22%  Similarity=0.230  Sum_probs=116.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh--------hhhhhhhhcc
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTAYYR   74 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~   74 (205)
                      .+|+++|.+|||||||+|+|.+.... ....+..+.+.....+.+++  ..+.+|||||.+.        +......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            57999999999999999999987642 22234444455556666766  6799999999876        3333456678


Q ss_pred             CCcEEEEEEeCCChhHHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC-cEEEEcCCCC
Q 028686           75 GAMGILLVYDVTDESSFN--NIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTN  151 (205)
Q Consensus        75 ~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  151 (205)
                      .+|++++|+|..++.+..  .+..|+.   .   .+.|+++|+||+|+.+.     .+...++ ..++. .++++||++|
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~~~~~l~---~---~~~piilv~NK~D~~~~-----~~~~~~~-~~lg~~~~~~iSa~~g  147 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEEIAKILR---K---SNKPVILVVNKVDGPDE-----EADAYEF-YSLGLGEPYPISAEHG  147 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHH---H---cCCcEEEEEECccCccc-----hhhHHHH-HhcCCCCCEEEEeeCC
Confidence            999999999998753332  2333333   2   25899999999997431     1223333 34455 4899999999


Q ss_pred             CCHHHHHHHHHHHHHHHhcccCCCCCCccccccCCCCCCCC
Q 028686          152 LNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGV  192 (205)
Q Consensus       152 ~gi~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (205)
                      .|++++|+++.+..... ........+.++.+...+..+++
T Consensus       148 ~gv~~l~~~I~~~~~~~-~~~~~~~~~~~v~ivG~~n~GKS  187 (435)
T PRK00093        148 RGIGDLLDAILEELPEE-EEEDEEDEPIKIAIIGRPNVGKS  187 (435)
T ss_pred             CCHHHHHHHHHhhCCcc-ccccccccceEEEEECCCCCCHH
Confidence            99999999998733221 11111223445555565555544

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.87  E-value=6.4e-21  Score=158.03  Aligned_cols=175  Identities=19%  Similarity=0.189  Sum_probs=116.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCCh--------hhhhhhhhhhccC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ--------ERFRTITTAYYRG   75 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~--------~~~~~~~~~~~~~   75 (205)
                      +|+++|.+|||||||+|+|.+.... ....+..+.+.....+.+++  ..+.+|||||.        ..+......+++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            5899999999999999999987632 22234444455555566666  45899999995        3345556677889


Q ss_pred             CcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC-cEEEEcCCCCCCH
Q 028686           76 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNV  154 (205)
Q Consensus        76 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi  154 (205)
                      +|++++|+|..+..+..+. .+...+.+   .+.|+++|+||+|+.+...     ...+ ....+. +++++||.+|.|+
T Consensus        79 ad~vl~vvD~~~~~~~~d~-~i~~~l~~---~~~piilVvNK~D~~~~~~-----~~~~-~~~lg~~~~~~vSa~~g~gv  148 (429)
T TIGR03594        79 ADVILFVVDGREGLTPEDE-EIAKWLRK---SGKPVILVANKIDGKKEDA-----VAAE-FYSLGFGEPIPISAEHGRGI  148 (429)
T ss_pred             CCEEEEEEeCCCCCCHHHH-HHHHHHHH---hCCCEEEEEECccCCcccc-----cHHH-HHhcCCCCeEEEeCCcCCCh
Confidence            9999999999875433321 22333333   3589999999999864221     1122 234565 7999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCCccccccCCCCCCC
Q 028686          155 EQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGG  191 (205)
Q Consensus       155 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (205)
                      +++++++.+.+............+.++.+...+..++
T Consensus       149 ~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GK  185 (429)
T TIGR03594       149 GDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGK  185 (429)
T ss_pred             HHHHHHHHHhcCcccccccccCCceEEEEECCCCCCH
Confidence            9999999887754322222222333455555444443

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.86  E-value=5e-21  Score=140.75  Aligned_cols=146  Identities=16%  Similarity=0.173  Sum_probs=96.6

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCCh----------hhhhhhhhhh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ----------ERFRTITTAY   72 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~~~~   72 (205)
                      ..+|+++|.+|+|||||+++|++..+...+.++.+.+.....+..++   .+.+||+||.          ..+..+...+
T Consensus        18 ~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   94 (179)
T TIGR03598        18 GPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLIEEY   94 (179)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHHHHH
Confidence            47999999999999999999998764333334444333333333332   5899999994          2344444455


Q ss_pred             cc---CCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC-CccCHHHHHHHHHHhC--CcEEEE
Q 028686           73 YR---GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK-RAVPTSKGQALADEYG--IKFFET  146 (205)
Q Consensus        73 ~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~--~~~~~~  146 (205)
                      ++   .++++++|+|.+++-+..+. .++..+..   .+.|+++++||+|+.+.. .....+++++.....+  .+++++
T Consensus        95 l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~  170 (179)
T TIGR03598        95 LEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLF  170 (179)
T ss_pred             HHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEE
Confidence            54   35799999999875444443 22333332   358999999999986421 1223444555555544  589999


Q ss_pred             cCCCCCCHH
Q 028686          147 SAKTNLNVE  155 (205)
Q Consensus       147 Sa~~~~gi~  155 (205)
                      ||++|+|++
T Consensus       171 Sa~~g~gi~  179 (179)
T TIGR03598       171 SSLKKTGID  179 (179)
T ss_pred             ECCCCCCCC
Confidence            999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.86  E-value=1.9e-20  Score=152.10  Aligned_cols=164  Identities=15%  Similarity=0.150  Sum_probs=114.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh----hh---hhhhccCC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR----TI---TTAYYRGA   76 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~~---~~~~~~~~   76 (205)
                      -.|+|+|.||||||||+|+|.+.+......|.++.....-.+.+.. ...+.++|+||...-.    .+   ....+..+
T Consensus       160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra  238 (390)
T PRK12298        160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERC  238 (390)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence            3689999999999999999998765333333232222323333332 2358999999964311    11   12346789


Q ss_pred             cEEEEEEeCC---ChhHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC--CcEEEEcCC
Q 028686           77 MGILLVYDVT---DESSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYG--IKFFETSAK  149 (205)
Q Consensus        77 d~~i~v~d~~---~~~s~~~~~~~~~~i~~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~  149 (205)
                      +++++|+|++   +.+.++.+..|++.+..+..  .+.|+++|+||+|+.+. . ...+.+..+...++  .+++.+||+
T Consensus       239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~-~-el~~~l~~l~~~~~~~~~Vi~ISA~  316 (390)
T PRK12298        239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE-E-EAEERAKAIVEALGWEGPVYLISAA  316 (390)
T ss_pred             CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh-H-HHHHHHHHHHHHhCCCCCEEEEECC
Confidence            9999999998   55677878888888876532  36899999999998542 1 22344455555544  478999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhc
Q 028686          150 TNLNVEQVFFSIARDIKQRLA  170 (205)
Q Consensus       150 ~~~gi~~~~~~i~~~~~~~~~  170 (205)
                      ++.|+++++++|.+.+.+...
T Consensus       317 tg~GIdeLl~~I~~~L~~~~~  337 (390)
T PRK12298        317 SGLGVKELCWDLMTFIEENPR  337 (390)
T ss_pred             CCcCHHHHHHHHHHHhhhCcc
Confidence            999999999999998866533

>cd04163 Era Era subfamily

Probab=99.86  E-value=1.5e-20  Score=135.62  Aligned_cols=156  Identities=16%  Similarity=0.105  Sum_probs=103.4

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcc-cceeeEEEEEEEEECCEEEEEEEEeCCChhhhh--------hhhhh
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFI-TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR--------TITTA   71 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~   71 (205)
                      |...+|+++|.+|+|||||+++|.+........ +..........  .......+.+||+||.....        .....
T Consensus         1 ~~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   78 (168)
T cd04163           1 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI--YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWS   78 (168)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEE--EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHH
Confidence            567899999999999999999999876432211 11111111111  22234678999999965322        22344


Q ss_pred             hccCCcEEEEEEeCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC-CcEEEEcCC
Q 028686           72 YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAK  149 (205)
Q Consensus        72 ~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~  149 (205)
                      .+..+|++++|+|++++.  .... .+...+..   .+.|+++++||+|+... .....+....+....+ .+++++|++
T Consensus        79 ~~~~~d~i~~v~d~~~~~--~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~  152 (168)
T cd04163          79 ALKDVDLVLFVVDASEPI--GEGDEFILELLKK---SKTPVILVLNKIDLVKD-KEDLLPLLEKLKELGPFAEIFPISAL  152 (168)
T ss_pred             HHHhCCEEEEEEECCCcc--CchHHHHHHHHHH---hCCCEEEEEEchhcccc-HHHHHHHHHHHHhccCCCceEEEEec
Confidence            578899999999999862  2222 23333333   25899999999998632 2222333444444443 689999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 028686          150 TNLNVEQVFFSIARD  164 (205)
Q Consensus       150 ~~~gi~~~~~~i~~~  164 (205)
                      ++.|+++++++|.+.
T Consensus       153 ~~~~~~~l~~~l~~~  167 (168)
T cd04163         153 KGENVDELLEEIVKY  167 (168)
T ss_pred             cCCChHHHHHHHHhh
Confidence            999999999999764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.86  E-value=1.9e-20  Score=159.51  Aligned_cols=146  Identities=18%  Similarity=0.219  Sum_probs=109.5

Q ss_pred             CCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhh------hhhhc--cCCcEEEE
Q 028686           10 ERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI------TTAYY--RGAMGILL   81 (205)
Q Consensus        10 G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~d~~i~   81 (205)
                      |.+|+|||||+|+|.+........|+.+.+.....+.+++  ..+.+|||||++++...      ...++  ..+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            8999999999999999876555566666666666666666  45799999998876543      33333  37899999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  161 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i  161 (205)
                      |+|.++.+..   ..+..++.+   .+.|+++++||+|+.+. ..+ ..+.+.+.+.++++++++||++|+|++++++++
T Consensus        79 VvDat~ler~---l~l~~ql~~---~~~PiIIVlNK~Dl~~~-~~i-~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i  150 (591)
T TIGR00437        79 VVDASNLERN---LYLTLQLLE---LGIPMILALNLVDEAEK-KGI-RIDEEKLEERLGVPVVPTSATEGRGIERLKDAI  150 (591)
T ss_pred             EecCCcchhh---HHHHHHHHh---cCCCEEEEEehhHHHHh-CCC-hhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHH
Confidence            9999875422   222233322   46999999999998542 222 345677888899999999999999999999999


Q ss_pred             HHHH
Q 028686          162 ARDI  165 (205)
Q Consensus       162 ~~~~  165 (205)
                      .+.+
T Consensus       151 ~~~~  154 (591)
T TIGR00437       151 RKAI  154 (591)
T ss_pred             HHHh
Confidence            8764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.85  E-value=8.7e-20  Score=129.80  Aligned_cols=155  Identities=21%  Similarity=0.305  Sum_probs=121.9

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCC--------CCC----cccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhh
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSF--------TTS----FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI   68 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~--------~~~----~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   68 (205)
                      |.-.||+|.|+.++||||++++++....        ...    ...|..+++....+.   .+..+++++||||++++.+
T Consensus         8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~---~~~~v~LfgtPGq~RF~fm   84 (187)
T COG2229           8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELD---EDTGVHLFGTPGQERFKFM   84 (187)
T ss_pred             ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEc---CcceEEEecCCCcHHHHHH
Confidence            3457999999999999999999988763        111    124555666655543   2256899999999999999


Q ss_pred             hhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHh--CCcEEEE
Q 028686           69 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY--GIKFFET  146 (205)
Q Consensus        69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~  146 (205)
                      |..+.+.+.++|+++|.+.+..+ +....++.+.....  +|++|++||.||.+.   ...++++++....  .++.++.
T Consensus        85 ~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~--ip~vVa~NK~DL~~a---~ppe~i~e~l~~~~~~~~vi~~  158 (187)
T COG2229          85 WEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP--IPVVVAINKQDLFDA---LPPEKIREALKLELLSVPVIEI  158 (187)
T ss_pred             HHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC--CCEEEEeeccccCCC---CCHHHHHHHHHhccCCCceeee
Confidence            99999999999999999999988 55555555554432  999999999999653   4567776665543  7899999


Q ss_pred             cCCCCCCHHHHHHHHHHH
Q 028686          147 SAKTNLNVEQVFFSIARD  164 (205)
Q Consensus       147 Sa~~~~gi~~~~~~i~~~  164 (205)
                      +|.++++..+.++.+...
T Consensus       159 ~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         159 DATEGEGARDQLDVLLLK  176 (187)
T ss_pred             ecccchhHHHHHHHHHhh
Confidence            999999999999888766

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.85  E-value=4.1e-20  Score=157.62  Aligned_cols=157  Identities=25%  Similarity=0.304  Sum_probs=111.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCC--CCC-----Cc------ccceeeEEEEEEE--EE---CCEEEEEEEEeCCChhhh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGS--FTT-----SF------ITTIGIDFKIRTI--EL---DGKRIKLQIWDTAGQERF   65 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~--~~~-----~~------~~t~~~~~~~~~~--~~---~~~~~~~~i~D~~g~~~~   65 (205)
                      -+|+++|..++|||||+.+|+...  +..     .+      ....|.++....+  .+   ++..+.+.+|||||+.+|
T Consensus         8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF   87 (600)
T PRK05433          8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF   87 (600)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence            489999999999999999998632  111     00      0111222332222  22   455789999999999999


Q ss_pred             hhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCc---
Q 028686           66 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIK---  142 (205)
Q Consensus        66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~---  142 (205)
                      ...+..+++.+|++|+|+|+++.........|.....    .++|+++|+||+|+.+..   ..+...++...+++.   
T Consensus        88 ~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~----~~lpiIvViNKiDl~~a~---~~~v~~ei~~~lg~~~~~  160 (600)
T PRK05433         88 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NDLEIIPVLNKIDLPAAD---PERVKQEIEDVIGIDASD  160 (600)
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEECCCCCccc---HHHHHHHHHHHhCCCcce
Confidence            9989999999999999999998655444444443321    468999999999985422   122233444445543   


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHHHH
Q 028686          143 FFETSAKTNLNVEQVFFSIARDIKQ  167 (205)
Q Consensus       143 ~~~~Sa~~~~gi~~~~~~i~~~~~~  167 (205)
                      ++++||++|.|+++++++|.+.+..
T Consensus       161 vi~iSAktG~GI~~Ll~~I~~~lp~  185 (600)
T PRK05433        161 AVLVSAKTGIGIEEVLEAIVERIPP  185 (600)
T ss_pred             EEEEecCCCCCHHHHHHHHHHhCcc
Confidence            8999999999999999999887643

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.84  E-value=1.3e-19  Score=158.11  Aligned_cols=178  Identities=17%  Similarity=0.115  Sum_probs=115.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh--------hhhhhhhhcc
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTAYYR   74 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~   74 (205)
                      .+|+++|.+|+|||||+|+|++.... ....++.+.+.......+++  ..+.+|||||.+.        +......++.
T Consensus       276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~  353 (712)
T PRK09518        276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIAVS  353 (712)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHHHH
Confidence            57999999999999999999987642 22334444444444445555  4688999999652        3344456788


Q ss_pred             CCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCH
Q 028686           75 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV  154 (205)
Q Consensus        75 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  154 (205)
                      .+|++++|+|.++.-...+ ..|...+..   .+.|+++|+||+|+....    ......+...++ ..+++||++|.|+
T Consensus       354 ~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~----~~~~~~~~lg~~-~~~~iSA~~g~GI  424 (712)
T PRK09518        354 LADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE----YDAAEFWKLGLG-EPYPISAMHGRGV  424 (712)
T ss_pred             hCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch----hhHHHHHHcCCC-CeEEEECCCCCCc
Confidence            9999999999986322111 134455543   469999999999985321    111222222222 4578999999999


Q ss_pred             HHHHHHHHHHHHHHhcccC--CCCCCccccccCCCCCCCC
Q 028686          155 EQVFFSIARDIKQRLADTD--SRSEPSTIKINQPDQAGGV  192 (205)
Q Consensus       155 ~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  192 (205)
                      +++|+++++.+.+......  ..+...++.+...+..+++
T Consensus       425 ~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKS  464 (712)
T PRK09518        425 GDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKS  464 (712)
T ss_pred             hHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHH
Confidence            9999999998855322110  1123345666665555544

>PRK00089 era GTPase Era; Reviewed

Probab=99.84  E-value=1.3e-19  Score=142.98  Aligned_cols=158  Identities=16%  Similarity=0.106  Sum_probs=103.7

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCC-cccceeeEEEEEEEEECCEEEEEEEEeCCChhhh--------hhhhhhhc
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTS-FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF--------RTITTAYY   73 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~~~~~~~   73 (205)
                      .-.|+++|.+|||||||+|+|++.++... ..+.+...........+  ...+.+|||||....        .......+
T Consensus         5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~--~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~   82 (292)
T PRK00089          5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTED--DAQIIFVDTPGIHKPKRALNRAMNKAAWSSL   82 (292)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcC--CceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence            35689999999999999999999875322 12211111211122222  267999999996432        22334456


Q ss_pred             cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC-CcEEEEcCCCCC
Q 028686           74 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNL  152 (205)
Q Consensus        74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~  152 (205)
                      ..+|++++|+|+++..+- .....++.+.   ..+.|+++|+||+|+... .....+....+....+ .+++++||+++.
T Consensus        83 ~~~D~il~vvd~~~~~~~-~~~~i~~~l~---~~~~pvilVlNKiDl~~~-~~~l~~~~~~l~~~~~~~~i~~iSA~~~~  157 (292)
T PRK00089         83 KDVDLVLFVVDADEKIGP-GDEFILEKLK---KVKTPVILVLNKIDLVKD-KEELLPLLEELSELMDFAEIVPISALKGD  157 (292)
T ss_pred             hcCCEEEEEEeCCCCCCh-hHHHHHHHHh---hcCCCEEEEEECCcCCCC-HHHHHHHHHHHHhhCCCCeEEEecCCCCC
Confidence            789999999999883211 1122223333   235899999999999632 2223344455555444 679999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 028686          153 NVEQVFFSIARDIKQ  167 (205)
Q Consensus       153 gi~~~~~~i~~~~~~  167 (205)
                      |++++++++.+.+.+
T Consensus       158 gv~~L~~~L~~~l~~  172 (292)
T PRK00089        158 NVDELLDVIAKYLPE  172 (292)
T ss_pred             CHHHHHHHHHHhCCC
Confidence            999999999888754

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.84  E-value=1.7e-19  Score=157.22  Aligned_cols=155  Identities=15%  Similarity=0.137  Sum_probs=113.8

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhh----------hh
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI----------TT   70 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~   70 (205)
                      |+.++|+++|.||||||||+|+|.+........+  |.+...+...+......+.+||+||.+++...          ..
T Consensus         1 ~~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~p--GvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~   78 (772)
T PRK09554          1 MKKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWA--GVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIAC   78 (772)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCCCccCCCC--CceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHH
Confidence            7789999999999999999999998765333333  33344444344445577999999998765421          12


Q ss_pred             hhc--cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcC
Q 028686           71 AYY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSA  148 (205)
Q Consensus        71 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  148 (205)
                      .++  ..+|++++|+|.++.+.-   ..|...+.+   .++|+++++||+|+.+. .. ...+.+++.+.++++++++|+
T Consensus        79 ~~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e---~giPvIvVlNK~Dl~~~-~~-i~id~~~L~~~LG~pVvpiSA  150 (772)
T PRK09554         79 HYILSGDADLLINVVDASNLERN---LYLTLQLLE---LGIPCIVALNMLDIAEK-QN-IRIDIDALSARLGCPVIPLVS  150 (772)
T ss_pred             HHHhccCCCEEEEEecCCcchhh---HHHHHHHHH---cCCCEEEEEEchhhhhc-cC-cHHHHHHHHHHhCCCEEEEEe
Confidence            232  479999999999986542   234444443   36999999999998542 22 245677788889999999999


Q ss_pred             CCCCCHHHHHHHHHHHH
Q 028686          149 KTNLNVEQVFFSIARDI  165 (205)
Q Consensus       149 ~~~~gi~~~~~~i~~~~  165 (205)
                      .+++|++++++.+.+..
T Consensus       151 ~~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        151 TRGRGIEALKLAIDRHQ  167 (772)
T ss_pred             ecCCCHHHHHHHHHHhh
Confidence            99999999999988765

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.84  E-value=1.1e-22  Score=144.19  Aligned_cols=184  Identities=30%  Similarity=0.509  Sum_probs=152.8

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCE-EEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK-RIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      .++++|+|+-|+|||+++.++....++..|..|+|.++..+.+.++.+ .+++++||..|++++-.+..-+++.+++.++
T Consensus        25 L~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~i  104 (229)
T KOG4423|consen   25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFI  104 (229)
T ss_pred             hhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEE
Confidence            468999999999999999999999999999999999988887777653 4678999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC-cEEEEcCCCCCCHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVEQ  156 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~  156 (205)
                      |||+++.-+|+....|.+.+.....    .-+|+++..||+|+..............+.+++|+ ..+++|++.+.+++|
T Consensus       105 Vfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni~E  184 (229)
T KOG4423|consen  105 VFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNIPE  184 (229)
T ss_pred             EEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccChhH
Confidence            9999999999999999999865432    33778888999998543332334667788888884 799999999999999


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCccccccCC
Q 028686          157 VFFSIARDIKQRLADTDSRSEPSTIKINQP  186 (205)
Q Consensus       157 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  186 (205)
                      +...+++.+.-+..+..+.+.+...++...
T Consensus       185 a~r~lVe~~lvnd~q~~~s~~~~~~~~~l~  214 (229)
T KOG4423|consen  185 AQRELVEKILVNDEQPIKSSAVDGDKINLR  214 (229)
T ss_pred             HHHHHHHHHHhhccCCcccccccccccCcc
Confidence            999999999887766655555554444443

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.84  E-value=9.6e-21  Score=155.01  Aligned_cols=164  Identities=23%  Similarity=0.309  Sum_probs=127.3

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+++|+.|+||||||-.|...++.+..++-......+.  ++.-..+...+.|++..++-+.....-+++||++.+
T Consensus         8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPa--dvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l   85 (625)
T KOG1707|consen    8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPA--DVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL   85 (625)
T ss_pred             cceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCC--ccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence            459999999999999999999999998777665444322222  222233568999998766655555778899999999


Q ss_pred             EEeCCChhHHHHHHH-HHHHHHhhcC--CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC-C-cEEEEcCCCCCCHHH
Q 028686           82 VYDVTDESSFNNIRN-WIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-I-KFFETSAKTNLNVEQ  156 (205)
Q Consensus        82 v~d~~~~~s~~~~~~-~~~~i~~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~-~~~~~Sa~~~~gi~~  156 (205)
                      ||+++++++++.+.. |+..+++..+  .++|+|+|+||+|+..............+..++. + .+++|||++..++.+
T Consensus        86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~e  165 (625)
T KOG1707|consen   86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVSE  165 (625)
T ss_pred             EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhHh
Confidence            999999999999976 9999988764  6799999999999876444322333555555554 2 589999999999999


Q ss_pred             HHHHHHHHHHH
Q 028686          157 VFFSIARDIKQ  167 (205)
Q Consensus       157 ~~~~i~~~~~~  167 (205)
                      +|+...+++..
T Consensus       166 ~fYyaqKaVih  176 (625)
T KOG1707|consen  166 LFYYAQKAVIH  176 (625)
T ss_pred             hhhhhhheeec
Confidence            99999888754

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.84  E-value=9.8e-20  Score=154.36  Aligned_cols=157  Identities=17%  Similarity=0.134  Sum_probs=105.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCccc----ceeeEEEEEEEE------------ECCEEEEEEEEeCCChhhhhh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFIT----TIGIDFKIRTIE------------LDGKRIKLQIWDTAGQERFRT   67 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~----t~~~~~~~~~~~------------~~~~~~~~~i~D~~g~~~~~~   67 (205)
                      --|+++|.+++|||||+++|.+..+......    +.+..+......            +......+.+|||||++.|..
T Consensus         5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~   84 (590)
T TIGR00491         5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN   84 (590)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence            3589999999999999999998876443222    223222211110            000112388999999999999


Q ss_pred             hhhhhccCCcEEEEEEeCCC---hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCc-----c------CHHH--
Q 028686           68 ITTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA-----V------PTSK--  131 (205)
Q Consensus        68 ~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~-----~------~~~~--  131 (205)
                      ++..+++.+|++++|+|+++   +++++.+..    +..   .++|+++++||+|+.+.-..     .      ..+.  
T Consensus        85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~----l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~  157 (590)
T TIGR00491        85 LRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQ  157 (590)
T ss_pred             HHHHHHhhCCEEEEEEECCcCCCHhHHHHHHH----HHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHH
Confidence            99999999999999999987   566655432    221   36899999999998631100     0      0000  


Q ss_pred             ----------HHHHHH------------Hh--CCcEEEEcCCCCCCHHHHHHHHHHHHHH
Q 028686          132 ----------GQALAD------------EY--GIKFFETSAKTNLNVEQVFFSIARDIKQ  167 (205)
Q Consensus       132 ----------~~~~~~------------~~--~~~~~~~Sa~~~~gi~~~~~~i~~~~~~  167 (205)
                                ...+.+            .+  .++++++||++|+|+++++.++......
T Consensus       158 ~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~  217 (590)
T TIGR00491       158 QNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQ  217 (590)
T ss_pred             HHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHH
Confidence                      001111            11  2689999999999999999998765544

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.84  E-value=4.8e-20  Score=148.14  Aligned_cols=182  Identities=18%  Similarity=0.156  Sum_probs=127.1

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh---------hhhhhh
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---------FRTITT   70 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~   70 (205)
                      |....|+++|.||||||||.|+|++.... ....|.++.|..+....+.+.  .+.++||+|.+.         ......
T Consensus         1 m~~~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~--~f~lIDTgGl~~~~~~~l~~~i~~Qa~   78 (444)
T COG1160           1 MSTPVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGR--EFILIDTGGLDDGDEDELQELIREQAL   78 (444)
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCc--eEEEEECCCCCcCCchHHHHHHHHHHH
Confidence            55567999999999999999999998854 444565666666666677664  489999999653         223345


Q ss_pred             hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC-CcEEEEcCC
Q 028686           71 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAK  149 (205)
Q Consensus        71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~  149 (205)
                      ..+..||++|||+|....-+-.+ ....+.++ .  .+.|+++|+||+|-..     ..+.+.+| -.+| -..+.+||.
T Consensus        79 ~Ai~eADvilfvVD~~~Git~~D-~~ia~~Lr-~--~~kpviLvvNK~D~~~-----~e~~~~ef-yslG~g~~~~ISA~  148 (444)
T COG1160          79 IAIEEADVILFVVDGREGITPAD-EEIAKILR-R--SKKPVILVVNKIDNLK-----AEELAYEF-YSLGFGEPVPISAE  148 (444)
T ss_pred             HHHHhCCEEEEEEeCCCCCCHHH-HHHHHHHH-h--cCCCEEEEEEcccCch-----hhhhHHHH-HhcCCCCceEeehh
Confidence            66789999999999977433222 11223333 2  4589999999999531     12222333 3345 478899999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhcccCCC--CCCccccccCCCCCCCCCCC
Q 028686          150 TNLNVEQVFFSIARDIKQRLADTDSR--SEPSTIKINQPDQAGGVGQA  195 (205)
Q Consensus       150 ~~~gi~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  195 (205)
                      +|.|+.++++.+++.+. ..++.+..  ..+-++.+...++.++|..-
T Consensus       149 Hg~Gi~dLld~v~~~l~-~~e~~~~~~~~~~ikiaiiGrPNvGKSsLi  195 (444)
T COG1160         149 HGRGIGDLLDAVLELLP-PDEEEEEEEETDPIKIAIIGRPNVGKSSLI  195 (444)
T ss_pred             hccCHHHHHHHHHhhcC-CcccccccccCCceEEEEEeCCCCCchHHH
Confidence            99999999999999985 22222222  36788888888888887653

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.84  E-value=3.5e-19  Score=147.94  Aligned_cols=160  Identities=24%  Similarity=0.166  Sum_probs=109.0

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCC-CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh----------hhhh-hh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTI-TT   70 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~-~~   70 (205)
                      .++|+++|.+|+|||||+++|++... .....+....+.....+..++  ..+.+|||||..+          +... ..
T Consensus       173 ~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~  250 (435)
T PRK00093        173 PIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRTL  250 (435)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence            48999999999999999999998752 233344444445445555555  4578999999532          1111 12


Q ss_pred             hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHH----hCCcEEEE
Q 028686           71 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADE----YGIKFFET  146 (205)
Q Consensus        71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~  146 (205)
                      ..++.+|++++|+|++++.+..+.. +...+..   .+.|+++++||+|+.+..  ...+....+...    ..++++++
T Consensus       251 ~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~--~~~~~~~~~~~~l~~~~~~~i~~~  324 (435)
T PRK00093        251 KAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEK--TMEEFKKELRRRLPFLDYAPIVFI  324 (435)
T ss_pred             HHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHH--HHHHHHHHHHHhcccccCCCEEEE
Confidence            4678899999999999876655542 3333332   458999999999986321  111111122222    24799999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHhc
Q 028686          147 SAKTNLNVEQVFFSIARDIKQRLA  170 (205)
Q Consensus       147 Sa~~~~gi~~~~~~i~~~~~~~~~  170 (205)
                      ||+++.|++++|+.+.+.+..+..
T Consensus       325 SA~~~~gv~~l~~~i~~~~~~~~~  348 (435)
T PRK00093        325 SALTGQGVDKLLEAIDEAYENANR  348 (435)
T ss_pred             eCCCCCCHHHHHHHHHHHHHHHcC
Confidence            999999999999999887766543

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.84  E-value=9.7e-20  Score=158.82  Aligned_cols=159  Identities=19%  Similarity=0.192  Sum_probs=111.6

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChh----------hhhhhh-h
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----------RFRTIT-T   70 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~-~   70 (205)
                      .++|+++|.+|||||||+|+|++.+.. ....++++.+.....+.+++..  +.+|||||..          .+..+. .
T Consensus       450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~~  527 (712)
T PRK09518        450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRTQ  527 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHHH
Confidence            379999999999999999999998742 2233434455655666677654  6799999953          222221 3


Q ss_pred             hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHH-HHHHh----CCcEEE
Q 028686           71 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQA-LADEY----GIKFFE  145 (205)
Q Consensus        71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~-~~~~~----~~~~~~  145 (205)
                      ..++.+|++++|+|+++..++.+.. ++..+..   .+.|+++|+||+|+.+...   .+.... +...+    ..+.++
T Consensus       528 ~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~~~---~~~~~~~~~~~l~~~~~~~ii~  600 (712)
T PRK09518        528 AAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDEFR---RQRLERLWKTEFDRVTWARRVN  600 (712)
T ss_pred             HHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCChhH---HHHHHHHHHHhccCCCCCCEEE
Confidence            4478899999999999987777654 3333432   4689999999999964211   122222 11221    257799


Q ss_pred             EcCCCCCCHHHHHHHHHHHHHHHhc
Q 028686          146 TSAKTNLNVEQVFFSIARDIKQRLA  170 (205)
Q Consensus       146 ~Sa~~~~gi~~~~~~i~~~~~~~~~  170 (205)
                      +||++|.|++++|+.+.+.+.++..
T Consensus       601 iSAktg~gv~~L~~~i~~~~~~~~~  625 (712)
T PRK09518        601 LSAKTGWHTNRLAPAMQEALESWDQ  625 (712)
T ss_pred             EECCCCCCHHHHHHHHHHHHHHhcc
Confidence            9999999999999999998876543

>cd00880 Era_like Era (E

Probab=99.84  E-value=4.8e-20  Score=131.74  Aligned_cols=152  Identities=19%  Similarity=0.132  Sum_probs=102.7

Q ss_pred             EECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh-------hhhhhhccCCcEE
Q 028686            8 YFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------TITTAYYRGAMGI   79 (205)
Q Consensus         8 v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~d~~   79 (205)
                      ++|.+|+|||||+++|.+.... ....+............... ...+.+||+||.....       .....++..+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999987644 22233222233333333321 3579999999976543       2344577899999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHH--HHHHHHHHhCCcEEEEcCCCCCCHHHH
Q 028686           80 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS--KGQALADEYGIKFFETSAKTNLNVEQV  157 (205)
Q Consensus        80 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~gi~~~  157 (205)
                      ++|+|..+..+..... |......   .+.|+++|+||.|+..........  .........+.+++++|++++.|++++
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l  155 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLRE---RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL  155 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHHh---cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence            9999999977666554 3333322   568999999999986532111110  112223344589999999999999999


Q ss_pred             HHHHHHH
Q 028686          158 FFSIARD  164 (205)
Q Consensus       158 ~~~i~~~  164 (205)
                      ++++.+.
T Consensus       156 ~~~l~~~  162 (163)
T cd00880         156 REALIEA  162 (163)
T ss_pred             HHHHHhh
Confidence            9999875

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.84  E-value=3.1e-20  Score=137.59  Aligned_cols=160  Identities=19%  Similarity=0.160  Sum_probs=106.3

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCC--C----------------CcccceeeEEEEEEEEECCEEEEEEEEeCCChh
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFT--T----------------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   63 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~--~----------------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~   63 (205)
                      ..++|+++|+.++|||||+++|+...-.  .                +.............+..+.....+.++|+||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            4689999999999999999999854311  1                011111122222333311234679999999999


Q ss_pred             hhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHH-HHHHHh---
Q 028686           64 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ-ALADEY---  139 (205)
Q Consensus        64 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~-~~~~~~---  139 (205)
                      +|.......+..+|++|+|+|+.+.-.. .....+..+..   .++|+++++||+|+...+.....+++. .+.+..   
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~---~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~  157 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILRE---LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN  157 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHH---TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred             ceeecccceecccccceeeeeccccccc-ccccccccccc---cccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence            9888888889999999999999875322 22223334433   468999999999986322211222222 333333   


Q ss_pred             ---CCcEEEEcCCCCCCHHHHHHHHHHHH
Q 028686          140 ---GIKFFETSAKTNLNVEQVFFSIARDI  165 (205)
Q Consensus       140 ---~~~~~~~Sa~~~~gi~~~~~~i~~~~  165 (205)
                         .++++++||++|.|++++++.+.+.+
T Consensus       158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~  186 (188)
T PF00009_consen  158 GEEIVPVIPISALTGDGIDELLEALVELL  186 (188)
T ss_dssp             TTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred             ccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence               25799999999999999999988764

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.84  E-value=3.3e-20  Score=126.10  Aligned_cols=156  Identities=21%  Similarity=0.301  Sum_probs=119.7

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..|||+++|-.++|||||+.+|..... ....||.|  |..+.+.+++ ++.+.+||.+|+...+..|..|+.+.|++||
T Consensus        16 rEirilllGldnAGKTT~LKqL~sED~-~hltpT~G--Fn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lIy   91 (185)
T KOG0074|consen   16 REIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNG--FNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLIY   91 (185)
T ss_pred             ceEEEEEEecCCCcchhHHHHHccCCh-hhccccCC--cceEEEeecC-cEEEEEEecCCccccchhhhhhhhccceEEE
Confidence            358999999999999999999988764 34456777  5555555543 6789999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-----HhCCcEEEEcCCCCCCHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVE  155 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~  155 (205)
                      |+|.+++--|+++...+-++... ....+|+.|.+||.|+.-+   ...+++..-++     ...+.+.++||.+++|+.
T Consensus        92 VIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllta---a~~eeia~klnl~~lrdRswhIq~csals~eg~~  168 (185)
T KOG0074|consen   92 VIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTA---AKVEEIALKLNLAGLRDRSWHIQECSALSLEGST  168 (185)
T ss_pred             EEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhh---cchHHHHHhcchhhhhhceEEeeeCccccccCcc
Confidence            99999998899887755555443 3367999999999998542   12222222111     112678899999999999


Q ss_pred             HHHHHHHHH
Q 028686          156 QVFFSIARD  164 (205)
Q Consensus       156 ~~~~~i~~~  164 (205)
                      +-.+|+...
T Consensus       169 dg~~wv~sn  177 (185)
T KOG0074|consen  169 DGSDWVQSN  177 (185)
T ss_pred             CcchhhhcC
Confidence            998888653

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.83  E-value=1.2e-19  Score=150.09  Aligned_cols=153  Identities=17%  Similarity=0.090  Sum_probs=104.3

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhC--CCC-----------------------------CCcccceeeEEEEEEEEECCE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDG--SFT-----------------------------TSFITTIGIDFKIRTIELDGK   50 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~--~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~   50 (205)
                      ..++|+++|..++|||||+.+|+..  .+.                             .+..+..+.+.....+..+  
T Consensus         6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~--   83 (426)
T TIGR00483         6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD--   83 (426)
T ss_pred             ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC--
Confidence            3589999999999999999999862  221                             1122344444444444444  


Q ss_pred             EEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHH--HHhhcCCCCcEEEEEeCCCCCCCCC---
Q 028686           51 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRN--IEQHASDNVNKVLVGNKADMDESKR---  125 (205)
Q Consensus        51 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~--i~~~~~~~~piiiv~nK~Dl~~~~~---  125 (205)
                      .+.+.+||+||+++|.......+..+|++++|+|+++.+++.. .++...  +.... ...|+++++||+|+.+...   
T Consensus        84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~-~~t~~~~~~~~~~-~~~~iIVviNK~Dl~~~~~~~~  161 (426)
T TIGR00483        84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQ-PQTREHAFLARTL-GINQLIVAINKMDSVNYDEEEF  161 (426)
T ss_pred             CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccC-CchHHHHHHHHHc-CCCeEEEEEEChhccCccHHHH
Confidence            4789999999999887666667789999999999998754322 222222  22222 2357889999999964211   


Q ss_pred             ccCHHHHHHHHHHhC-----CcEEEEcCCCCCCHHHHH
Q 028686          126 AVPTSKGQALADEYG-----IKFFETSAKTNLNVEQVF  158 (205)
Q Consensus       126 ~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~~  158 (205)
                      ....+++..+++..+     ++++++||++|.|+++++
T Consensus       162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             HHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence            122445566666655     679999999999998744

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK10218 GTP-binding protein; Provisional

Probab=99.82  E-value=5.8e-19  Score=150.14  Aligned_cols=160  Identities=16%  Similarity=0.170  Sum_probs=114.8

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHh--CCCCCCc------------ccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSD--GSFTTSF------------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI   68 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~--~~~~~~~------------~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   68 (205)
                      .-+|+++|..++|||||+++|+.  +.+....            ..+.+.++......+....+.+.+|||||+.+|...
T Consensus         5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~   84 (607)
T PRK10218          5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE   84 (607)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence            46899999999999999999997  3332211            223455555555555556688999999999999999


Q ss_pred             hhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHH-------hCC
Q 028686           69 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADE-------YGI  141 (205)
Q Consensus        69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~-------~~~  141 (205)
                      +..+++.+|++++|+|+.+.... ....++..+..   .++|+++++||+|+.+.......+++..+...       ..+
T Consensus        85 v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~  160 (607)
T PRK10218         85 VERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF  160 (607)
T ss_pred             HHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCC
Confidence            99999999999999999875322 22333333332   46899999999998754443334455544322       347


Q ss_pred             cEEEEcCCCCC----------CHHHHHHHHHHHHH
Q 028686          142 KFFETSAKTNL----------NVEQVFFSIARDIK  166 (205)
Q Consensus       142 ~~~~~Sa~~~~----------gi~~~~~~i~~~~~  166 (205)
                      +++.+||++|.          |+..+|+.+++.+.
T Consensus       161 PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP  195 (607)
T PRK10218        161 PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP  195 (607)
T ss_pred             CEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence            89999999998          57778877766653

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.82  E-value=1.8e-18  Score=132.10  Aligned_cols=151  Identities=21%  Similarity=0.153  Sum_probs=101.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh-------hhhhhhccCCc
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------TITTAYYRGAM   77 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~d   77 (205)
                      +|+++|++|+|||||+++|.+........+..+.+.....+.+++  ..+++||+||.....       ......++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            689999999999999999998764322222222233344445555  678999999974322       12345688999


Q ss_pred             EEEEEEeCCChh-HHHHHHHHHHHH-----------------------------------------Hhh-----------
Q 028686           78 GILLVYDVTDES-SFNNIRNWIRNI-----------------------------------------EQH-----------  104 (205)
Q Consensus        78 ~~i~v~d~~~~~-s~~~~~~~~~~i-----------------------------------------~~~-----------  104 (205)
                      ++++|+|+++++ ....+...++..                                         ..+           
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~  159 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE  159 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence            999999998765 333333322211                                         000           


Q ss_pred             -----------c--CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHHHH
Q 028686          105 -----------A--SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI  165 (205)
Q Consensus       105 -----------~--~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~  165 (205)
                                 .  ..-+|+++|+||+|+.+      .+++..++..  ..++++||+++.|++++|+.+.+.+
T Consensus       160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~------~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS------IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CCCHHHHHHHHhCCceEeeEEEEEECccCCC------HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                       0  01268999999999843      4455555543  4689999999999999999988754

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.82  E-value=3.8e-19  Score=151.31  Aligned_cols=158  Identities=17%  Similarity=0.199  Sum_probs=111.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC--CCCCCc------------ccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhh
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG--SFTTSF------------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITT   70 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~--~~~~~~------------~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   70 (205)
                      +|+++|..++|||||+++|+..  .+....            ...-|.+.......+....+++.+|||||+.+|.....
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~   82 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE   82 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence            7999999999999999999863  222111            01112333333333333447899999999999998899


Q ss_pred             hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-------HhCCcE
Q 028686           71 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD-------EYGIKF  143 (205)
Q Consensus        71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~  143 (205)
                      .+++.+|++++|+|+++. .......|+..+..   .++|+++++||+|+.+.......+++..+..       +..+++
T Consensus        83 ~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pv  158 (594)
T TIGR01394        83 RVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPI  158 (594)
T ss_pred             HHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcE
Confidence            999999999999999873 23444556666554   4689999999999865332222344444432       234789


Q ss_pred             EEEcCCCCC----------CHHHHHHHHHHHHH
Q 028686          144 FETSAKTNL----------NVEQVFFSIARDIK  166 (205)
Q Consensus       144 ~~~Sa~~~~----------gi~~~~~~i~~~~~  166 (205)
                      +.+||++|.          |++.+|+.+++.+.
T Consensus       159 l~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP  191 (594)
T TIGR01394       159 VYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP  191 (594)
T ss_pred             EechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence            999999995          79999988887664

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=4.7e-20  Score=125.69  Aligned_cols=158  Identities=22%  Similarity=0.361  Sum_probs=119.1

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      -.+|+++|-.|+|||+++.++.-++.. ...||++  +....+.+  ++.++++||.+|+...+..|+-|+.+.|++|||
T Consensus        18 e~rililgldGaGkttIlyrlqvgevv-ttkPtig--fnve~v~y--KNLk~~vwdLggqtSirPyWRcYy~dt~avIyV   92 (182)
T KOG0072|consen   18 EMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIG--FNVETVPY--KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYV   92 (182)
T ss_pred             ceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCC--cCcccccc--ccccceeeEccCcccccHHHHHHhcccceEEEE
Confidence            478999999999999999888766643 4456666  33334444  568899999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHH-HhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHH-----HHHhCCcEEEEcCCCCCCHHH
Q 028686           83 YDVTDESSFNNIRNWIRNI-EQHASDNVNKVLVGNKADMDESKRAVPTSKGQAL-----ADEYGIKFFETSAKTNLNVEQ  156 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i-~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~  156 (205)
                      +|.+|++.+......+-.+ ....-....+++++||.|...   .....|+...     .+..-+.+++.||.+|+|++.
T Consensus        93 VDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~---~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~  169 (182)
T KOG0072|consen   93 VDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSG---ALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDP  169 (182)
T ss_pred             EeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchh---hhhHHHHHHHhChHHHhhheeEEEeeccccccCCcH
Confidence            9999988777666544433 333335577888899999843   2233333222     112227899999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028686          157 VFFSIARDIKQR  168 (205)
Q Consensus       157 ~~~~i~~~~~~~  168 (205)
                      .++|+.+.+..+
T Consensus       170 ~~DWL~~~l~~~  181 (182)
T KOG0072|consen  170 AMDWLQRPLKSR  181 (182)
T ss_pred             HHHHHHHHHhcc
Confidence            999999987653

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.81  E-value=5.1e-19  Score=146.37  Aligned_cols=154  Identities=19%  Similarity=0.085  Sum_probs=100.3

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCC--C-----------------------------CCcccceeeEEEEEEEEECCE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSF--T-----------------------------TSFITTIGIDFKIRTIELDGK   50 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~--~-----------------------------~~~~~t~~~~~~~~~~~~~~~   50 (205)
                      ..++|+++|.+++|||||+++|+...-  .                             .+..+.+..+.....+..  .
T Consensus         5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~--~   82 (425)
T PRK12317          5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET--D   82 (425)
T ss_pred             CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec--C
Confidence            358999999999999999999984321  0                             111233333444334444  4


Q ss_pred             EEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHH-HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC---c
Q 028686           51 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNN-IRNWIRNIEQHASDNVNKVLVGNKADMDESKR---A  126 (205)
Q Consensus        51 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~---~  126 (205)
                      .+.+.+|||||+++|.......+..+|++++|+|++++.++.. ...++..+. .. ...|+++++||+|+.+.+.   .
T Consensus        83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~-~~-~~~~iivviNK~Dl~~~~~~~~~  160 (425)
T PRK12317         83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLAR-TL-GINQLIVAINKMDAVNYDEKRYE  160 (425)
T ss_pred             CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHH-Hc-CCCeEEEEEEccccccccHHHHH
Confidence            4779999999998876655556788999999999987322211 112222222 22 1246899999999964211   1


Q ss_pred             cCHHHHHHHHHHhC-----CcEEEEcCCCCCCHHHHHH
Q 028686          127 VPTSKGQALADEYG-----IKFFETSAKTNLNVEQVFF  159 (205)
Q Consensus       127 ~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~~~  159 (205)
                      ...+++..+....+     ++++++||++|.|+++++.
T Consensus       161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~  198 (425)
T PRK12317        161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE  198 (425)
T ss_pred             HHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence            22345555655555     5799999999999987543

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.81  E-value=1.4e-18  Score=125.58  Aligned_cols=151  Identities=17%  Similarity=0.190  Sum_probs=98.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChh----------hhhhhhhhhcc
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----------RFRTITTAYYR   74 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~~~~~~   74 (205)
                      .|+++|.+|+|||||++.|.+..+.....++.+.+.....+..++   .+.+||+||..          .+......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            379999999999999999996655554555554444433444333   78999999942          23344444443


Q ss_pred             ---CCcEEEEEEeCCChh--HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC-ccCHHHHHHHHH--HhCCcEEEE
Q 028686           75 ---GAMGILLVYDVTDES--SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-AVPTSKGQALAD--EYGIKFFET  146 (205)
Q Consensus        75 ---~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~-~~~~~~~~~~~~--~~~~~~~~~  146 (205)
                         ..+++++++|.....  ....+..|+..      .+.|+++++||+|+..... ...........+  ....+++++
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  151 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF  151 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence               457888999987653  22233333332      2489999999999853211 111122222222  233689999


Q ss_pred             cCCCCCCHHHHHHHHHHH
Q 028686          147 SAKTNLNVEQVFFSIARD  164 (205)
Q Consensus       147 Sa~~~~gi~~~~~~i~~~  164 (205)
                      |++++.|+++++++|.+.
T Consensus       152 Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         152 SSLKGQGIDELRALIEKW  169 (170)
T ss_pred             ecCCCCCHHHHHHHHHHh
Confidence            999999999999999875

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.80  E-value=1.9e-18  Score=139.38  Aligned_cols=152  Identities=22%  Similarity=0.205  Sum_probs=114.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhh--------hhhhcc
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTAYYR   74 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~   74 (205)
                      ++++++|.||+|||||+|.|++.+.. .+..|.++.|+....+.++|  +.+.+.||+|..+....        ....+.
T Consensus       218 ~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~  295 (454)
T COG0486         218 LKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKAIE  295 (454)
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHHHH
Confidence            79999999999999999999998743 56677777889989999988  77899999996543332        234467


Q ss_pred             CCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCH
Q 028686           75 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV  154 (205)
Q Consensus        75 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  154 (205)
                      .||.+++|+|.+.+.+-.+.. .+.    ....+.|+++|.||.||......      .......+.+.+.+|++++.|+
T Consensus       296 ~ADlvL~v~D~~~~~~~~d~~-~~~----~~~~~~~~i~v~NK~DL~~~~~~------~~~~~~~~~~~i~iSa~t~~Gl  364 (454)
T COG0486         296 EADLVLFVLDASQPLDKEDLA-LIE----LLPKKKPIIVVLNKADLVSKIEL------ESEKLANGDAIISISAKTGEGL  364 (454)
T ss_pred             hCCEEEEEEeCCCCCchhhHH-HHH----hcccCCCEEEEEechhccccccc------chhhccCCCceEEEEecCccCH
Confidence            899999999999852222211 111    23356899999999999753221      1111222357899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 028686          155 EQVFFSIARDIKQR  168 (205)
Q Consensus       155 ~~~~~~i~~~~~~~  168 (205)
                      +.+.+.|.+.+...
T Consensus       365 ~~L~~~i~~~~~~~  378 (454)
T COG0486         365 DALREAIKQLFGKG  378 (454)
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999999988776

>COG1159 Era GTPase [General function prediction only]

Probab=99.80  E-value=3.1e-18  Score=131.03  Aligned_cols=160  Identities=18%  Similarity=0.098  Sum_probs=106.4

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh--------hhhhhhhh
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTAY   72 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~   72 (205)
                      .---|+++|.||+|||||+|+|++.+.. .+..+.++.......+..+  +.++.++||||...        +.......
T Consensus         5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk~~l~~~m~~~a~~s   82 (298)
T COG1159           5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPKHALGELMNKAARSA   82 (298)
T ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence            3356899999999999999999999864 2333333333333333333  46789999999542        22334555


Q ss_pred             ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC-CcEEEEcCCCC
Q 028686           73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTN  151 (205)
Q Consensus        73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~  151 (205)
                      +..+|+++||+|++..-.- .....++.+..   .+.|+++++||.|....... .......+..... ...+++||++|
T Consensus        83 l~dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~-l~~~~~~~~~~~~f~~ivpiSA~~g  157 (298)
T COG1159          83 LKDVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTV-LLKLIAFLKKLLPFKEIVPISALKG  157 (298)
T ss_pred             hccCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHH-HHHHHHHHHhhCCcceEEEeecccc
Confidence            7789999999999873221 11223344443   35899999999998653221 1233333333333 47999999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q 028686          152 LNVEQVFFSIARDIKQR  168 (205)
Q Consensus       152 ~gi~~~~~~i~~~~~~~  168 (205)
                      .|++.+.+.+...+.+.
T Consensus       158 ~n~~~L~~~i~~~Lpeg  174 (298)
T COG1159         158 DNVDTLLEIIKEYLPEG  174 (298)
T ss_pred             CCHHHHHHHHHHhCCCC
Confidence            99999999888777554

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.79  E-value=1.8e-18  Score=130.12  Aligned_cols=148  Identities=22%  Similarity=0.117  Sum_probs=94.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCC-------------------------------cccceeeEEEEEEEEECCEEEE
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTS-------------------------------FITTIGIDFKIRTIELDGKRIK   53 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~-------------------------------~~~t~~~~~~~~~~~~~~~~~~   53 (205)
                      ||+++|.+++|||||+++|+...-...                               ..+....+.....+..++  ..
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~   78 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK   78 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence            689999999999999999976431100                               012222233333333433  56


Q ss_pred             EEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCc---cCHH
Q 028686           54 LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA---VPTS  130 (205)
Q Consensus        54 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~---~~~~  130 (205)
                      +.+|||||+.++.......+..+|++++|+|+++... .........+.. . ...++++|+||+|+.+....   ....
T Consensus        79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~-~~~~~~~~~~~~-~-~~~~iIvviNK~D~~~~~~~~~~~i~~  155 (208)
T cd04166          79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVL-EQTRRHSYILSL-L-GIRHVVVAVNKMDLVDYSEEVFEEIVA  155 (208)
T ss_pred             EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCcc-HhHHHHHHHHHH-c-CCCcEEEEEEchhcccCCHHHHHHHHH
Confidence            8899999998877666667889999999999987531 111122222222 1 12357788999998642111   1123


Q ss_pred             HHHHHHHHhC---CcEEEEcCCCCCCHHHH
Q 028686          131 KGQALADEYG---IKFFETSAKTNLNVEQV  157 (205)
Q Consensus       131 ~~~~~~~~~~---~~~~~~Sa~~~~gi~~~  157 (205)
                      +++.+...++   .+++.+||++|.|+.+.
T Consensus       156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         156 DYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            4455555555   45899999999998753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.79  E-value=4e-18  Score=145.04  Aligned_cols=157  Identities=18%  Similarity=0.178  Sum_probs=103.8

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcc----cceeeEEEEEEEE--ECCEE-----E-----EEEEEeCCChhhhh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFI----TTIGIDFKIRTIE--LDGKR-----I-----KLQIWDTAGQERFR   66 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~----~t~~~~~~~~~~~--~~~~~-----~-----~~~i~D~~g~~~~~   66 (205)
                      ...|+++|.+++|||||+++|.+..+.....    ++.|..+......  ..+..     .     .+.+|||||++.|.
T Consensus         6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~   85 (586)
T PRK04004          6 QPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFT   85 (586)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHH
Confidence            4569999999999999999998765433222    2333222221110  00111     1     26899999999999


Q ss_pred             hhhhhhccCCcEEEEEEeCCC---hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCcc--C----------HHH
Q 028686           67 TITTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAV--P----------TSK  131 (205)
Q Consensus        67 ~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~--~----------~~~  131 (205)
                      .++...+..+|++++|+|+++   +++++.+..    +..   .++|+++++||+|+... +..  .          ...
T Consensus        86 ~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~---~~vpiIvviNK~D~~~~-~~~~~~~~~~e~~~~~~~~  157 (586)
T PRK04004         86 NLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR---RKTPFVVAANKIDRIPG-WKSTEDAPFLESIEKQSQR  157 (586)
T ss_pred             HHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH---cCCCEEEEEECcCCchh-hhhhcCchHHHHHhhhhHH
Confidence            988888899999999999997   667665532    222   46899999999998521 110  0          000


Q ss_pred             -----------HHHHHHHh---------------CCcEEEEcCCCCCCHHHHHHHHHHHHHH
Q 028686          132 -----------GQALADEY---------------GIKFFETSAKTNLNVEQVFFSIARDIKQ  167 (205)
Q Consensus       132 -----------~~~~~~~~---------------~~~~~~~Sa~~~~gi~~~~~~i~~~~~~  167 (205)
                                 +..+....               .++++++||++|.|+++++..+...+..
T Consensus       158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~  219 (586)
T PRK04004        158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQR  219 (586)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHH
Confidence                       00111111               2679999999999999999988765543

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.79  E-value=5.4e-18  Score=136.44  Aligned_cols=164  Identities=23%  Similarity=0.144  Sum_probs=116.4

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCC-CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh----------hhhh-h
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTI-T   69 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~-~   69 (205)
                      ..+||+++|.|++|||||+|+|++.+- .....+.++.|.....+..+++.  +.++||+|..+          |... .
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~--~~liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRK--YVLIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeE--EEEEECCCCCcccccccceEEEeehhh
Confidence            368999999999999999999999873 24445556667777777777754  78889999542          2211 2


Q ss_pred             hhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHH----HHHHHhC-CcEE
Q 028686           70 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ----ALADEYG-IKFF  144 (205)
Q Consensus        70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~----~~~~~~~-~~~~  144 (205)
                      ...+..+|++++|+|++.+-+-.+. .....+..   .+.+++||+||+|+.+. .....++.+    ......+ ++.+
T Consensus       255 ~~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~~---~g~~~vIvvNKWDl~~~-~~~~~~~~k~~i~~~l~~l~~a~i~  329 (444)
T COG1160         255 LKAIERADVVLLVIDATEGISEQDL-RIAGLIEE---AGRGIVIVVNKWDLVEE-DEATMEEFKKKLRRKLPFLDFAPIV  329 (444)
T ss_pred             HhHHhhcCEEEEEEECCCCchHHHH-HHHHHHHH---cCCCeEEEEEccccCCc-hhhHHHHHHHHHHHHhccccCCeEE
Confidence            3456789999999999987554332 12222322   56899999999998663 222333332    2222222 7899


Q ss_pred             EEcCCCCCCHHHHHHHHHHHHHHHhccc
Q 028686          145 ETSAKTNLNVEQVFFSIARDIKQRLADT  172 (205)
Q Consensus       145 ~~Sa~~~~gi~~~~~~i~~~~~~~~~~~  172 (205)
                      .+||+++.++.++|+.+.+....+...-
T Consensus       330 ~iSA~~~~~i~~l~~~i~~~~~~~~~ri  357 (444)
T COG1160         330 FISALTGQGLDKLFEAIKEIYECATRRI  357 (444)
T ss_pred             EEEecCCCChHHHHHHHHHHHHHhcccc
Confidence            9999999999999999999888776554

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.79  E-value=2.7e-18  Score=119.52  Aligned_cols=135  Identities=21%  Similarity=0.228  Sum_probs=98.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChh----hhhhhhhhhccCCcEEE
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----RFRTITTAYYRGAMGIL   80 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~~~~d~~i   80 (205)
                      ||+++|+.|||||||+++|.+.+.  .+..|....|..            .++||||..    .+..-......+||+++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~~------------~~IDTPGEyiE~~~~y~aLi~ta~dad~V~   68 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYYD------------NTIDTPGEYIENPRFYHALIVTAQDADVVL   68 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEecc------------cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence            679999999999999999988664  444554433331            336999965    22222333445899999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC-cEEEEcCCCCCCHHHHHH
Q 028686           81 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVEQVFF  159 (205)
Q Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~  159 (205)
                      +|.|++++.+.--     ..+....  +.|+|-|++|.|+..  .....+.++++.+.-|+ ..|++|+.+|+|++++.+
T Consensus        69 ll~dat~~~~~~p-----P~fa~~f--~~pvIGVITK~Dl~~--~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~  139 (143)
T PF10662_consen   69 LLQDATEPRSVFP-----PGFASMF--NKPVIGVITKIDLPS--DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKD  139 (143)
T ss_pred             EEecCCCCCccCC-----chhhccc--CCCEEEEEECccCcc--chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHH
Confidence            9999998654211     2333333  379999999999963  23456777888888886 579999999999999999


Q ss_pred             HHH
Q 028686          160 SIA  162 (205)
Q Consensus       160 ~i~  162 (205)
                      +|.
T Consensus       140 ~L~  142 (143)
T PF10662_consen  140 YLE  142 (143)
T ss_pred             HHh
Confidence            874

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.79  E-value=6.4e-18  Score=129.23  Aligned_cols=114  Identities=18%  Similarity=0.105  Sum_probs=80.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCC--------CCCc--------ccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhh
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSF--------TTSF--------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI   68 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~--------~~~~--------~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   68 (205)
                      +|+++|.+|+|||||+++|+...-        ....        ...-+.........+.....++.+|||||+.++...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            589999999999999999986421        0000        001111222222333334478999999999999888


Q ss_pred             hhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686           69 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  122 (205)
Q Consensus        69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~  122 (205)
                      +..+++.+|++++|+|+++.... ....++..+..   .++|+++++||+|+.+
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~~  130 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRAG  130 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECccccC
Confidence            88899999999999999886432 33445555543   3689999999999864

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.79  E-value=2.2e-18  Score=141.59  Aligned_cols=164  Identities=15%  Similarity=0.090  Sum_probs=104.8

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCCCC---Cccc--ceeeEEEE----------------EEEEECC------EEEE
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTT---SFIT--TIGIDFKI----------------RTIELDG------KRIK   53 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~---~~~~--t~~~~~~~----------------~~~~~~~------~~~~   53 (205)
                      |..++|+++|.+++|||||+++|.+...+.   +...  |....+..                .....++      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            456899999999999999999997542211   1111  11111110                0000011      1357


Q ss_pred             EEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC-ccCHHHH
Q 028686           54 LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-AVPTSKG  132 (205)
Q Consensus        54 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~-~~~~~~~  132 (205)
                      +.+||+||+++|...+......+|++++|+|+++..........+..+...  ...|+++++||+|+.+.+. ....+++
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~i  159 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII--GIKNIVIVQNKIDLVSKEKALENYEEI  159 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc--CCCeEEEEEEccccCCHHHHHHHHHHH
Confidence            899999999999887877888899999999998632111222222223221  1246899999999964211 1122344


Q ss_pred             HHHHHHh---CCcEEEEcCCCCCCHHHHHHHHHHHHH
Q 028686          133 QALADEY---GIKFFETSAKTNLNVEQVFFSIARDIK  166 (205)
Q Consensus       133 ~~~~~~~---~~~~~~~Sa~~~~gi~~~~~~i~~~~~  166 (205)
                      .++....   +++++++||++|.|+++++++|...+.
T Consensus       160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            4444432   578999999999999999999987653

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.78  E-value=1.3e-17  Score=142.67  Aligned_cols=155  Identities=19%  Similarity=0.166  Sum_probs=107.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC---CCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS---FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      -|+++|..++|||||+++|.+..   +.++..+.++.+.....+...+ ...+.+||+||+++|.......+..+|++++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            47899999999999999998643   3334334444444433333322 1347999999999997777777889999999


Q ss_pred             EEeCCC---hhHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCC-ccCHHHHHHHHHHhC---CcEEEEcCCCCCC
Q 028686           82 VYDVTD---ESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR-AVPTSKGQALADEYG---IKFFETSAKTNLN  153 (205)
Q Consensus        82 v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~---~~~~~~Sa~~~~g  153 (205)
                      |+|+++   +++.+.+    ..+..   .++| ++||+||+|+.+... ....+++.++....+   .+++++||++|.|
T Consensus        81 VVda~eg~~~qT~ehl----~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~g  153 (614)
T PRK10512         81 VVACDDGVMAQTREHL----AILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRG  153 (614)
T ss_pred             EEECCCCCcHHHHHHH----HHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCC
Confidence            999987   4444443    22222   2355 578999999864211 112344555554444   6899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 028686          154 VEQVFFSIARDIKQ  167 (205)
Q Consensus       154 i~~~~~~i~~~~~~  167 (205)
                      ++++++.|.+....
T Consensus       154 I~~L~~~L~~~~~~  167 (614)
T PRK10512        154 IDALREHLLQLPER  167 (614)
T ss_pred             CHHHHHHHHHhhcc
Confidence            99999999875543

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.78  E-value=2.8e-18  Score=130.04  Aligned_cols=147  Identities=16%  Similarity=0.076  Sum_probs=92.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCC--C-----------------------------CCcccceeeEEEEEEEEECCEEEE
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSF--T-----------------------------TSFITTIGIDFKIRTIELDGKRIK   53 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~--~-----------------------------~~~~~t~~~~~~~~~~~~~~~~~~   53 (205)
                      +|+++|..++|||||+.+|+...-  .                             .+..+.+..+.....+..++  ..
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~   78 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR   78 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence            589999999999999999964210  0                             01112222333334444444  67


Q ss_pred             EEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhH---HH---HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC-c
Q 028686           54 LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS---FN---NIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-A  126 (205)
Q Consensus        54 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~-~  126 (205)
                      +.+||+||+.++.......+..+|++++|+|+++.+.   |.   .....+.... .. ...|+++++||+|+..... .
T Consensus        79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~iiivvNK~Dl~~~~~~~  156 (219)
T cd01883          79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLAR-TL-GVKQLIVAVNKMDDVTVNWSE  156 (219)
T ss_pred             EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHH-Hc-CCCeEEEEEEccccccccccH
Confidence            9999999998887767777788999999999988421   11   1112222222 21 2368899999999963211 1


Q ss_pred             ----cCHHHHHHHHHHhC-----CcEEEEcCCCCCCHH
Q 028686          127 ----VPTSKGQALADEYG-----IKFFETSAKTNLNVE  155 (205)
Q Consensus       127 ----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~  155 (205)
                          ...+++..+....+     ++++++||++|.|++
T Consensus       157 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         157 ERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence                11222333334433     679999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.77  E-value=7.5e-18  Score=138.43  Aligned_cols=158  Identities=17%  Similarity=0.160  Sum_probs=101.0

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCC---CCccc--ceeeEEEEEEE----------------EEC--C----EEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFT---TSFIT--TIGIDFKIRTI----------------ELD--G----KRIKLQ   55 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~---~~~~~--t~~~~~~~~~~----------------~~~--~----~~~~~~   55 (205)
                      .++|+++|..++|||||+.+|.+...+   .+..+  |....+....+                .++  +    ....+.
T Consensus         9 ~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   88 (411)
T PRK04000          9 EVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRVS   88 (411)
T ss_pred             cEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEEE
Confidence            488999999999999999999653211   11111  22111111000                011  0    125789


Q ss_pred             EEeCCChhhhhhhhhhhccCCcEEEEEEeCCCh----hHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCc-cCHH
Q 028686           56 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA-VPTS  130 (205)
Q Consensus        56 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~-~~~~  130 (205)
                      +||+||+++|..........+|++++|+|++++    ++.+.+.    .+...  ...|+++|+||+|+.+.+.. ...+
T Consensus        89 liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~----~l~~~--~i~~iiVVlNK~Dl~~~~~~~~~~~  162 (411)
T PRK04000         89 FVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM----ALDII--GIKNIVIVQNKIDLVSKERALENYE  162 (411)
T ss_pred             EEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH----HHHHc--CCCcEEEEEEeeccccchhHHHHHH
Confidence            999999998876655556678999999999953    3333332    22221  12468999999998652211 1123


Q ss_pred             HHHHHHHHh---CCcEEEEcCCCCCCHHHHHHHHHHHHH
Q 028686          131 KGQALADEY---GIKFFETSAKTNLNVEQVFFSIARDIK  166 (205)
Q Consensus       131 ~~~~~~~~~---~~~~~~~Sa~~~~gi~~~~~~i~~~~~  166 (205)
                      ++..+....   +++++++||+++.|+++++++|...+.
T Consensus       163 ~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~  201 (411)
T PRK04000        163 QIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP  201 (411)
T ss_pred             HHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence            444444332   478999999999999999999987653

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.76  E-value=3.1e-17  Score=121.90  Aligned_cols=147  Identities=18%  Similarity=0.135  Sum_probs=95.3

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCC----------------CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR   66 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   66 (205)
                      .++|+++|..++|||||+++|++...                ..+..+...  .......+......+.++||||+.++.
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~T--i~~~~~~~~~~~~~i~~iDtPG~~~~~   79 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGIT--INTAHVEYETANRHYAHVDCPGHADYI   79 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCcc--EEeeeeEecCCCeEEEEEECcCHHHHH
Confidence            47999999999999999999986410                001122222  222233333344578899999999887


Q ss_pred             hhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCC--ccCHHHHHHHHHHhC---
Q 028686           67 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR--AVPTSKGQALADEYG---  140 (205)
Q Consensus        67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~---  140 (205)
                      ......+..+|++++|+|+...-. ......+..+..   .++| +++++||+|+.....  +...+++..+....+   
T Consensus        80 ~~~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~  155 (195)
T cd01884          80 KNMITGAAQMDGAILVVSATDGPM-PQTREHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG  155 (195)
T ss_pred             HHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence            777777889999999999986421 112223333333   3466 778999999853211  112234555555443   


Q ss_pred             --CcEEEEcCCCCCCHH
Q 028686          141 --IKFFETSAKTNLNVE  155 (205)
Q Consensus       141 --~~~~~~Sa~~~~gi~  155 (205)
                        ++++.+||++|.++.
T Consensus       156 ~~v~iipiSa~~g~n~~  172 (195)
T cd01884         156 DNTPIVRGSALKALEGD  172 (195)
T ss_pred             cCCeEEEeeCccccCCC
Confidence              789999999998753

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04167 Snu114p Snu114p subfamily

Probab=99.76  E-value=4.3e-17  Score=123.02  Aligned_cols=113  Identities=28%  Similarity=0.263  Sum_probs=79.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCc-----------------ccceeeEEEEEEEE--E---CCEEEEEEEEeCCCh
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTSF-----------------ITTIGIDFKIRTIE--L---DGKRIKLQIWDTAGQ   62 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~-----------------~~t~~~~~~~~~~~--~---~~~~~~~~i~D~~g~   62 (205)
                      +|+++|..++|||||+++|+........                 ....+..+....+.  +   ++..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            6899999999999999999875432110                 01111222211111  1   355688999999999


Q ss_pred             hhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028686           63 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD  121 (205)
Q Consensus        63 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~  121 (205)
                      .++......++..+|++++|+|+.+..++.. ..|+..+..   .+.|+++++||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence            9988888888999999999999987665532 334444332   358999999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.74  E-value=8.6e-17  Score=134.97  Aligned_cols=159  Identities=16%  Similarity=0.147  Sum_probs=119.1

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh------hhhhhhc-
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR------TITTAYY-   73 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~-   73 (205)
                      |+..+|+++|.||+|||||.|+|.+.......-|..+.+...-.+...+++  +++.|+||-....      ....+++ 
T Consensus         1 ~~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll   78 (653)
T COG0370           1 MKKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLL   78 (653)
T ss_pred             CCcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHh
Confidence            677889999999999999999999988776777766656655566666644  8899999965422      2233343 


Q ss_pred             -cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCC
Q 028686           74 -RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL  152 (205)
Q Consensus        74 -~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  152 (205)
                       .+.|+++-|+|+++.+-=..+  .++.+ +   -+.|++++.|+.|...  ..-..-+.+++.+.+|+|++++||++|+
T Consensus        79 ~~~~D~ivnVvDAtnLeRnLyl--tlQLl-E---~g~p~ilaLNm~D~A~--~~Gi~ID~~~L~~~LGvPVv~tvA~~g~  150 (653)
T COG0370          79 EGKPDLIVNVVDATNLERNLYL--TLQLL-E---LGIPMILALNMIDEAK--KRGIRIDIEKLSKLLGVPVVPTVAKRGE  150 (653)
T ss_pred             cCCCCEEEEEcccchHHHHHHH--HHHHH-H---cCCCeEEEeccHhhHH--hcCCcccHHHHHHHhCCCEEEEEeecCC
Confidence             357999999999996532222  22222 2   4689999999999753  4344566778889999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHh
Q 028686          153 NVEQVFFSIARDIKQRL  169 (205)
Q Consensus       153 gi~~~~~~i~~~~~~~~  169 (205)
                      |++++...+++....+.
T Consensus       151 G~~~l~~~i~~~~~~~~  167 (653)
T COG0370         151 GLEELKRAIIELAESKT  167 (653)
T ss_pred             CHHHHHHHHHHhccccc
Confidence            99999999987654443

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.73  E-value=5e-17  Score=124.87  Aligned_cols=154  Identities=18%  Similarity=0.226  Sum_probs=108.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCccc--ceeeEEEEEEEEECCEEEEEEEEeCCChhh----hhhhhhhh---cc
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFIT--TIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTAY---YR   74 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~   74 (205)
                      -.|.++|.||+|||||++.|.+.+......+  |..++..  .+.+++.. .+.+-|.||.-+    .+.+-..|   +.
T Consensus       197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG--~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiE  273 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIG--TVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIE  273 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccc--eeeccccc-eeEeccCccccccccccCcccHHHHHHHH
Confidence            3578999999999999999999875432222  2222222  33333322 388889998532    23333333   55


Q ss_pred             CCcEEEEEEeCCCh---hHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC-cEEEEcC
Q 028686           75 GAMGILLVYDVTDE---SSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSA  148 (205)
Q Consensus        75 ~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa  148 (205)
                      .+..++||+|++..   ..++.+..+..++..+..  .+.|.+||+||+|+++++    ...+.+++....- .++++||
T Consensus       274 R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae----~~~l~~L~~~lq~~~V~pvsA  349 (366)
T KOG1489|consen  274 RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE----KNLLSSLAKRLQNPHVVPVSA  349 (366)
T ss_pred             hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH----HHHHHHHHHHcCCCcEEEeee
Confidence            79999999999998   888888888888866543  568999999999985322    1224566666654 4899999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 028686          149 KTNLNVEQVFFSIARD  164 (205)
Q Consensus       149 ~~~~gi~~~~~~i~~~  164 (205)
                      +.++|+.++++.+-+.
T Consensus       350 ~~~egl~~ll~~lr~~  365 (366)
T KOG1489|consen  350 KSGEGLEELLNGLREL  365 (366)
T ss_pred             ccccchHHHHHHHhhc
Confidence            9999999999887653

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.72  E-value=3e-16  Score=128.35  Aligned_cols=158  Identities=20%  Similarity=0.186  Sum_probs=119.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECC-EEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG-KRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .=|+++|.-..|||||+..+-.......-...++.+..-..+.++- ..-.+.|+|||||+.|..+..+=..-+|++|+|
T Consensus         6 PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILV   85 (509)
T COG0532           6 PVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILV   85 (509)
T ss_pred             CEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEE
Confidence            3479999999999999999998887666666666667767776642 224689999999999999998888999999999


Q ss_pred             EeCCC---hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHH---HHHhC--CcEEEEcCCCCCCH
Q 028686           83 YDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQAL---ADEYG--IKFFETSAKTNLNV  154 (205)
Q Consensus        83 ~d~~~---~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~---~~~~~--~~~~~~Sa~~~~gi  154 (205)
                      +|+++   |++.+.+       ......++|++|++||+|.++.+......+.+++   ...++  ..++++||++|+|+
T Consensus        86 Va~dDGv~pQTiEAI-------~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi  158 (509)
T COG0532          86 VAADDGVMPQTIEAI-------NHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGI  158 (509)
T ss_pred             EEccCCcchhHHHHH-------HHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCH
Confidence            99998   5555443       3333467999999999998753322222222221   22333  67999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 028686          155 EQVFFSIARDIKQR  168 (205)
Q Consensus       155 ~~~~~~i~~~~~~~  168 (205)
                      ++|+..++-...-.
T Consensus       159 ~eLL~~ill~aev~  172 (509)
T COG0532         159 DELLELILLLAEVL  172 (509)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999988777666

>PRK12735 elongation factor Tu; Reviewed

Probab=99.72  E-value=1.4e-16  Score=130.52  Aligned_cols=156  Identities=15%  Similarity=0.122  Sum_probs=99.7

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhC-------CC---------CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDG-------SF---------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR   66 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~-------~~---------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   66 (205)
                      .++|+++|.+++|||||+++|++.       .+         ..+..+....+.  ....+......+.++||||+.+|.
T Consensus        12 ~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~--~~~~~~~~~~~i~~iDtPGh~~f~   89 (396)
T PRK12735         12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINT--SHVEYETANRHYAHVDCPGHADYV   89 (396)
T ss_pred             eEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEE--eeeEEcCCCcEEEEEECCCHHHHH
Confidence            589999999999999999999862       10         011122222233  223333334568999999999887


Q ss_pred             hhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCCCC--ccCHHHHHHHHHHhC---
Q 028686           67 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKV-LVGNKADMDESKR--AVPTSKGQALADEYG---  140 (205)
Q Consensus        67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-iv~nK~Dl~~~~~--~~~~~~~~~~~~~~~---  140 (205)
                      ......+..+|++++|+|+.+... .....++..+.   ..++|.+ +++||+|+.+.+.  +...+++..+...++   
T Consensus        90 ~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~---~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~  165 (396)
T PRK12735         90 KNMITGAAQMDGAILVVSAADGPM-PQTREHILLAR---QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPG  165 (396)
T ss_pred             HHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHH---HcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCc
Confidence            666667788999999999987421 12222233332   2457865 5799999964211  112234555555543   


Q ss_pred             --CcEEEEcCCCCC----------CHHHHHHHHHHH
Q 028686          141 --IKFFETSAKTNL----------NVEQVFFSIARD  164 (205)
Q Consensus       141 --~~~~~~Sa~~~~----------gi~~~~~~i~~~  164 (205)
                        ++++++||.++.          ++.++++.|...
T Consensus       166 ~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~  201 (396)
T PRK12735        166 DDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY  201 (396)
T ss_pred             CceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence              689999999984          566666666554

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.72  E-value=3.2e-16  Score=116.86  Aligned_cols=160  Identities=14%  Similarity=0.108  Sum_probs=96.3

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceee-EEE--EEEEEECCEEEEEEEEeCCChhhhhhh-----hhhhcc
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGI-DFK--IRTIELDGKRIKLQIWDTAGQERFRTI-----TTAYYR   74 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~-~~~--~~~~~~~~~~~~~~i~D~~g~~~~~~~-----~~~~~~   74 (205)
                      +++|+++|.+|+|||||+|.|++.........+.+. ...  ...+... ....+.+||+||.......     ....+.
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            479999999999999999999986543322222221 111  0111111 1235899999996532211     122356


Q ss_pred             CCcEEEEEEeCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCCCc----------cCHHHHHHHHH----Hh
Q 028686           75 GAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRA----------VPTSKGQALAD----EY  139 (205)
Q Consensus        75 ~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~----------~~~~~~~~~~~----~~  139 (205)
                      .+|+++++.+.    +|.... .|++.+...   +.|+++|+||+|+......          ...++++..+.    ..
T Consensus        80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~  152 (197)
T cd04104          80 EYDFFIIISST----RFSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA  152 (197)
T ss_pred             CcCEEEEEeCC----CCCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence            78988887432    233332 355555543   4799999999998431111          11122222222    21


Q ss_pred             C---CcEEEEcCC--CCCCHHHHHHHHHHHHHHHhc
Q 028686          140 G---IKFFETSAK--TNLNVEQVFFSIARDIKQRLA  170 (205)
Q Consensus       140 ~---~~~~~~Sa~--~~~gi~~~~~~i~~~~~~~~~  170 (205)
                      +   -++|.+|+.  .+.|+..+.+.++..+.++.+
T Consensus       153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~  188 (197)
T cd04104         153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR  188 (197)
T ss_pred             CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence            2   368899998  578999999999999887654

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PRK12736 elongation factor Tu; Reviewed

Probab=99.72  E-value=1.9e-16  Score=129.66  Aligned_cols=158  Identities=18%  Similarity=0.137  Sum_probs=100.1

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCC----------------CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhh
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF   65 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   65 (205)
                      ..++|+++|..++|||||+++|++...                ..+..+....+.  ....+......+.+||+||+++|
T Consensus        11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~--~~~~~~~~~~~i~~iDtPGh~~f   88 (394)
T PRK12736         11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINT--AHVEYETEKRHYAHVDCPGHADY   88 (394)
T ss_pred             CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEE--EeeEecCCCcEEEEEECCCHHHH
Confidence            358999999999999999999986311                011122222233  33334334456889999999988


Q ss_pred             hhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCCcc--CHHHHHHHHHHhC--
Q 028686           66 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKRAV--PTSKGQALADEYG--  140 (205)
Q Consensus        66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~--  140 (205)
                      ......-+..+|++++|+|++.... .....++..+..   .++| +++++||+|+.+.+...  ..+++..+....+  
T Consensus        89 ~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~  164 (394)
T PRK12736         89 VKNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFP  164 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCC
Confidence            7666666778999999999986311 111222233332   3577 67889999986422111  1234555555454  


Q ss_pred             ---CcEEEEcCCCCC--------CHHHHHHHHHHHH
Q 028686          141 ---IKFFETSAKTNL--------NVEQVFFSIARDI  165 (205)
Q Consensus       141 ---~~~~~~Sa~~~~--------gi~~~~~~i~~~~  165 (205)
                         ++++++||++|.        ++.++++.+.+.+
T Consensus       165 ~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l  200 (394)
T PRK12736        165 GDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI  200 (394)
T ss_pred             cCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence               589999999983        4556666655543

>cd04169 RF3 RF3 subfamily

Probab=99.72  E-value=3.3e-16  Score=121.71  Aligned_cols=115  Identities=15%  Similarity=0.173  Sum_probs=78.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCC--CCCC---------------ccc---ceeeEEEEEEEEECCEEEEEEEEeCCChh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGS--FTTS---------------FIT---TIGIDFKIRTIELDGKRIKLQIWDTAGQE   63 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~--~~~~---------------~~~---t~~~~~~~~~~~~~~~~~~~~i~D~~g~~   63 (205)
                      -+|+++|.+|+|||||+++|+...  ....               +.+   --+..+......+....+.+.+|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            479999999999999999998532  1100               000   00122233333444455889999999999


Q ss_pred             hhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686           64 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  122 (205)
Q Consensus        64 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~  122 (205)
                      +|.......++.+|++|+|+|+++... .....++.....   .++|+++++||+|+..
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~~~---~~~P~iivvNK~D~~~  137 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVCRL---RGIPIITFINKLDREG  137 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence            888777778899999999999987532 122233333322   4689999999999854

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>COG2262 HflX GTPases [General function prediction only]

Probab=99.72  E-value=4.8e-16  Score=123.62  Aligned_cols=159  Identities=21%  Similarity=0.145  Sum_probs=113.0

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChh---------hhhhhhhhhc
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE---------RFRTITTAYY   73 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~~   73 (205)
                      ...|.++|..|+|||||+|+|.+........-..+.+.....+.+.+ ...+.+.||-|.-         .|++..+. .
T Consensus       192 ~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE-~  269 (411)
T COG2262         192 IPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEE-V  269 (411)
T ss_pred             CCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHH-h
Confidence            35789999999999999999998765433333333445555566653 2457888999953         24443332 3


Q ss_pred             cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCC
Q 028686           74 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN  153 (205)
Q Consensus        74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  153 (205)
                      ..+|++++|+|++++...+.+..-.+.+......++|+++|.||+|+..+..  .   ......... ..+.+||+++.|
T Consensus       270 ~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~--~---~~~~~~~~~-~~v~iSA~~~~g  343 (411)
T COG2262         270 KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE--I---LAELERGSP-NPVFISAKTGEG  343 (411)
T ss_pred             hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh--h---hhhhhhcCC-CeEEEEeccCcC
Confidence            4799999999999998777777777777666556699999999999754222  1   111111112 578899999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 028686          154 VEQVFFSIARDIKQRL  169 (205)
Q Consensus       154 i~~~~~~i~~~~~~~~  169 (205)
                      ++.+++.|.+.+....
T Consensus       344 l~~L~~~i~~~l~~~~  359 (411)
T COG2262         344 LDLLRERIIELLSGLR  359 (411)
T ss_pred             HHHHHHHHHHHhhhcc
Confidence            9999999999887543

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.72  E-value=3.5e-16  Score=113.80  Aligned_cols=155  Identities=19%  Similarity=0.213  Sum_probs=106.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCC----------hhhhhhhhhhhc
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QERFRTITTAYY   73 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~~~~~   73 (205)
                      ..|+++|.+|||||||+|+|++.+.-.....|+|.+.....+.+++.   +.+.|.||          .+++..+...|+
T Consensus        25 ~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL  101 (200)
T COG0218          25 PEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEEYL  101 (200)
T ss_pred             cEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHHHH
Confidence            57999999999999999999998754555666676666666677653   78999999          344556666666


Q ss_pred             cC---CcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHh----CCc--EE
Q 028686           74 RG---AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY----GIK--FF  144 (205)
Q Consensus        74 ~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~--~~  144 (205)
                      ..   ..++++++|...+-...+. +.++.+..   .++|++|++||+|-.....  ........++..    ...  ++
T Consensus       102 ~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~---~~i~~~vv~tK~DKi~~~~--~~k~l~~v~~~l~~~~~~~~~~~  175 (200)
T COG0218         102 EKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE---LGIPVIVVLTKADKLKKSE--RNKQLNKVAEELKKPPPDDQWVV  175 (200)
T ss_pred             hhchhheEEEEEEECCCCCcHHHH-HHHHHHHH---cCCCeEEEEEccccCChhH--HHHHHHHHHHHhcCCCCccceEE
Confidence            53   4577788888764433222 23333333   4699999999999754211  112223333222    233  78


Q ss_pred             EEcCCCCCCHHHHHHHHHHHHHH
Q 028686          145 ETSAKTNLNVEQVFFSIARDIKQ  167 (205)
Q Consensus       145 ~~Sa~~~~gi~~~~~~i~~~~~~  167 (205)
                      ..|+.++.|++++...|.+.+..
T Consensus       176 ~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         176 LFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             EEecccccCHHHHHHHHHHHhhc
Confidence            89999999999999988877654

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.71  E-value=7.5e-17  Score=121.95  Aligned_cols=167  Identities=16%  Similarity=0.233  Sum_probs=106.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCc---ccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh-----hhhhhhccCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTSF---ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-----TITTAYYRGA   76 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-----~~~~~~~~~~   76 (205)
                      ||+++|+.+|||||+.+.+..+-.+...   .+|..  .....+... ..+.+.+||+||+..+.     ......++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~--ve~~~v~~~-~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v   77 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTID--VEKSHVRFL-SFLPLNIWDCPGQDDFMENYFNSQREEIFSNV   77 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----S--EEEEEEECT-TSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCC--ceEEEEecC-CCcEEEEEEcCCccccccccccccHHHHHhcc
Confidence            7999999999999998888876433222   23333  222333322 23689999999987543     3467789999


Q ss_pred             cEEEEEEeCCChhH---HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCc-c----CHHHHHHHHHHhC---CcEEE
Q 028686           77 MGILLVYDVTDESS---FNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA-V----PTSKGQALADEYG---IKFFE  145 (205)
Q Consensus        77 d~~i~v~d~~~~~s---~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~-~----~~~~~~~~~~~~~---~~~~~  145 (205)
                      .++|||+|+...+-   +..+...+..+.+.. +++.+.+.++|+|+..++.+ .    ..+.+.+.+...+   +.++.
T Consensus        78 ~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s-p~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~  156 (232)
T PF04670_consen   78 GVLIYVFDAQSDDYDEDLAYLSDCIEALRQYS-PNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFL  156 (232)
T ss_dssp             SEEEEEEETT-STCHHHHHHHHHHHHHHHHHS-TT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEE
T ss_pred             CEEEEEEEcccccHHHHHHHHHHHHHHHHHhC-CCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEe
Confidence            99999999995443   333444444455444 78999999999998642211 1    1222333344445   78999


Q ss_pred             EcCCCCCCHHHHHHHHHHHHHHHhcccCCCC
Q 028686          146 TSAKTNLNVEQVFFSIARDIKQRLADTDSRS  176 (205)
Q Consensus       146 ~Sa~~~~gi~~~~~~i~~~~~~~~~~~~~~~  176 (205)
                      +|..+. .+-++|..+++.+.++.+..+...
T Consensus       157 TSI~D~-Sly~A~S~Ivq~LiP~~~~le~~L  186 (232)
T PF04670_consen  157 TSIWDE-SLYEAWSKIVQKLIPNLSTLENLL  186 (232)
T ss_dssp             E-TTST-HHHHHHHHHHHTTSTTHCCCCCCC
T ss_pred             ccCcCc-HHHHHHHHHHHHHcccHHHHHHHH
Confidence            999985 899999999999988777665543

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>cd01850 CDC_Septin CDC/Septin

Probab=99.71  E-value=2.4e-16  Score=123.04  Aligned_cols=145  Identities=19%  Similarity=0.186  Sum_probs=95.2

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCC----------cccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhh----
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTS----------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT----   67 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----   67 (205)
                      ..++|+++|.+|+|||||+|+|++..+...          ..+|.........+..++..+.+.+|||||..+...    
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            468999999999999999999999875433          345556666666677788888999999999432110    


Q ss_pred             ----------------------hhhhhcc--CCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028686           68 ----------------------ITTAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES  123 (205)
Q Consensus        68 ----------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~  123 (205)
                                            .....+.  .+|+++|+++.+.. .+....  ++.+.... .++|+++|+||+|+...
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D--~~~lk~l~-~~v~vi~VinK~D~l~~  158 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLD--IEFMKRLS-KRVNIIPVIAKADTLTP  158 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHH--HHHHHHHh-ccCCEEEEEECCCcCCH
Confidence                                  0112233  46777777776642 111110  22233332 25899999999998531


Q ss_pred             -CCccCHHHHHHHHHHhCCcEEEEcCCC
Q 028686          124 -KRAVPTSKGQALADEYGIKFFETSAKT  150 (205)
Q Consensus       124 -~~~~~~~~~~~~~~~~~~~~~~~Sa~~  150 (205)
                       +.....+.+.+.+..+++++|.....+
T Consensus       159 ~e~~~~k~~i~~~l~~~~i~~~~~~~~~  186 (276)
T cd01850         159 EELKEFKQRIMEDIEEHNIKIYKFPEDE  186 (276)
T ss_pred             HHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence             222345556677788889988776543

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.71  E-value=1e-15  Score=116.09  Aligned_cols=152  Identities=16%  Similarity=0.089  Sum_probs=94.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCccc-----------------------ceeeEEEE---------------EEEE
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTSFIT-----------------------TIGIDFKI---------------RTIE   46 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~-----------------------t~~~~~~~---------------~~~~   46 (205)
                      ||+++|+.++|||||+++|..+.+......                       ..+.+...               ..+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            689999999999999999987655321110                       01111000               0111


Q ss_pred             ECCEEEEEEEEeCCChhhhhhhhhhhc--cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC
Q 028686           47 LDGKRIKLQIWDTAGQERFRTITTAYY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK  124 (205)
Q Consensus        47 ~~~~~~~~~i~D~~g~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~  124 (205)
                      ..  ...+.++|+||+++|.......+  ..+|++++|+|+..... .....++..+..   .++|+++|+||+|+.+..
T Consensus        81 ~~--~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~  154 (224)
T cd04165          81 KS--SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA---LNIPVFVVVTKIDLAPAN  154 (224)
T ss_pred             eC--CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEECccccCHH
Confidence            11  24688999999998865444334  36899999999876432 222233344433   358999999999985421


Q ss_pred             -CccCHHHHHHHHHH--------------------------hCCcEEEEcCCCCCCHHHHHHHHH
Q 028686          125 -RAVPTSKGQALADE--------------------------YGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus       125 -~~~~~~~~~~~~~~--------------------------~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                       .....+++.++...                          ..+++|.+||.+|.|++++...|.
T Consensus       155 ~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         155 ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence             11112222222221                          124899999999999999998774

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.70  E-value=9.7e-16  Score=118.57  Aligned_cols=159  Identities=18%  Similarity=0.153  Sum_probs=110.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChh-----hhhh---hh-hhhcc
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE-----RFRT---IT-TAYYR   74 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~---~~-~~~~~   74 (205)
                      ..|+|.|.||||||||++.+.+.+......|.++.....-.+..++  ..++++||||.-     +.+.   .. .++-.
T Consensus       169 pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~h  246 (346)
T COG1084         169 PTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILALRH  246 (346)
T ss_pred             CeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHHHH
Confidence            4689999999999999999999987755555444344444444433  678999999931     1111   11 11122


Q ss_pred             CCcEEEEEEeCCChh--HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC-CcEEEEcCCCC
Q 028686           75 GAMGILLVYDVTDES--SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTN  151 (205)
Q Consensus        75 ~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~  151 (205)
                      -+++++|++|.+...  +.+.-..+++.+.....  .|+++|.||+|+.+.   ...+++.......+ .....+++..+
T Consensus       247 l~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~---e~~~~~~~~~~~~~~~~~~~~~~~~~  321 (346)
T COG1084         247 LAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADE---EKLEEIEASVLEEGGEEPLKISATKG  321 (346)
T ss_pred             hcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccch---hHHHHHHHHHHhhccccccceeeeeh
Confidence            478899999998743  56777778999988874  899999999998542   22344444344444 44778999999


Q ss_pred             CCHHHHHHHHHHHHHHHh
Q 028686          152 LNVEQVFFSIARDIKQRL  169 (205)
Q Consensus       152 ~gi~~~~~~i~~~~~~~~  169 (205)
                      .+++.+-..+...+.+..
T Consensus       322 ~~~d~~~~~v~~~a~~~~  339 (346)
T COG1084         322 CGLDKLREEVRKTALEPL  339 (346)
T ss_pred             hhHHHHHHHHHHHhhchh
Confidence            999988888887765543

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.70  E-value=2.6e-16  Score=118.92  Aligned_cols=123  Identities=19%  Similarity=0.162  Sum_probs=82.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCC--CCC--------------cccceeeEEEEEEEEEC--------CEEEEEEEEeCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSF--TTS--------------FITTIGIDFKIRTIELD--------GKRIKLQIWDTA   60 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~--~~~--------------~~~t~~~~~~~~~~~~~--------~~~~~~~i~D~~   60 (205)
                      +|+++|..++|||||+.+|+...-  ...              ......+......+.+.        ++.+.+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            689999999999999999976431  100              01111111111122222        446889999999


Q ss_pred             ChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHH
Q 028686           61 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK  131 (205)
Q Consensus        61 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~  131 (205)
                      |+.+|.......++.+|++++|+|+.+..+.... ..+....   ..++|+++++||+|+...+..+..++
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~---~~~~p~ilviNKiD~~~~e~~~~~~~  148 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQAL---KERVKPVLVINKIDRLILELKLSPEE  148 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHH---HcCCCEEEEEECCCcchhhhcCCHHH
Confidence            9999999899999999999999999986544332 2222222   24689999999999864334444333

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.70  E-value=4.2e-16  Score=127.75  Aligned_cols=142  Identities=18%  Similarity=0.123  Sum_probs=93.3

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCC-------C---------CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhh
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGS-------F---------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF   65 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~-------~---------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   65 (205)
                      ..++|+++|..++|||||+++|++..       .         ..+..+....+.  ..+.+......+.+|||||+++|
T Consensus        11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~--~~~~~~~~~~~~~liDtpGh~~f   88 (394)
T TIGR00485        11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINT--AHVEYETENRHYAHVDCPGHADY   88 (394)
T ss_pred             ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceee--EEEEEcCCCEEEEEEECCchHHH
Confidence            35899999999999999999997430       0         011123333333  33334444467899999999988


Q ss_pred             hhhhhhhccCCcEEEEEEeCCCh---hHHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCCCC--ccCHHHHHHHHHHh
Q 028686           66 RTITTAYYRGAMGILLVYDVTDE---SSFNNIRNWIRNIEQHASDNVNKV-LVGNKADMDESKR--AVPTSKGQALADEY  139 (205)
Q Consensus        66 ~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~pii-iv~nK~Dl~~~~~--~~~~~~~~~~~~~~  139 (205)
                      ..........+|++++|+|+...   ++.+    ++..+..   .++|.+ +++||+|+.+.+.  +...++++++....
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~e----~l~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~  161 (394)
T TIGR00485        89 VKNMITGAAQMDGAILVVSATDGPMPQTRE----HILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEY  161 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCcHHHHH----HHHHHHH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhc
Confidence            76666666789999999999873   3332    2233332   357765 6799999864221  11123566666655


Q ss_pred             C-----CcEEEEcCCCCC
Q 028686          140 G-----IKFFETSAKTNL  152 (205)
Q Consensus       140 ~-----~~~~~~Sa~~~~  152 (205)
                      +     ++++++||+++.
T Consensus       162 ~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       162 DFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             CCCccCccEEECcccccc
Confidence            4     789999999874

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=6.3e-17  Score=113.05  Aligned_cols=154  Identities=16%  Similarity=0.255  Sum_probs=115.4

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .=|++++|-.|+|||||++.|.+.... .+.||.-  ..+..+.+.+  ++++-+|.+|+-..+..|..++..+|++++.
T Consensus        20 ~gKllFlGLDNAGKTTLLHMLKdDrl~-qhvPTlH--PTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l   94 (193)
T KOG0077|consen   20 FGKLLFLGLDNAGKTTLLHMLKDDRLG-QHVPTLH--PTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYL   94 (193)
T ss_pred             CceEEEEeecCCchhhHHHHHcccccc-ccCCCcC--CChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence            358999999999999999999887642 2233332  2233444544  7789999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHH---HHhC--------------CcEE
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALA---DEYG--------------IKFF  144 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~---~~~~--------------~~~~  144 (205)
                      +|+-+.+-|.+.+..++.+.... -..+|+++.+||+|.+.+   ..+++.+...   +..+              +..+
T Consensus        95 vda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a---~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evf  171 (193)
T KOG0077|consen   95 VDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA---ASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVF  171 (193)
T ss_pred             eehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc---ccHHHHHHHHHHHHHhcccccccccCCCCCeEEEE
Confidence            99999999998888777775443 267999999999998654   2444433221   1111              4578


Q ss_pred             EEcCCCCCCHHHHHHHHHHH
Q 028686          145 ETSAKTNLNVEQVFFSIARD  164 (205)
Q Consensus       145 ~~Sa~~~~gi~~~~~~i~~~  164 (205)
                      .||...+.+.-+.|.|+...
T Consensus       172 mcsi~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  172 MCSIVRKMGYGEGFKWLSQY  191 (193)
T ss_pred             EEEEEccCccceeeeehhhh
Confidence            89998888888888887653

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.68  E-value=4.4e-16  Score=129.01  Aligned_cols=148  Identities=17%  Similarity=0.116  Sum_probs=99.3

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCC--C-----------------------------CCCcccceeeEEEEEEEEECCEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGS--F-----------------------------TTSFITTIGIDFKIRTIELDGKR   51 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~--~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~   51 (205)
                      .++|+++|..++|||||+.+|+...  .                             ..+......++....  .+....
T Consensus         7 ~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~--~~~~~~   84 (447)
T PLN00043          7 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALW--KFETTK   84 (447)
T ss_pred             eEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEE--EecCCC
Confidence            4789999999999999999986421  0                             011122222233222  233344


Q ss_pred             EEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHH-------HHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCC
Q 028686           52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN-------NIRNWIRNIEQHASDNVN-KVLVGNKADMDES  123 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~i~~~~~~~~p-iiiv~nK~Dl~~~  123 (205)
                      ..+.++|+||+++|.......+..+|++|+|+|+++. +|+       .+...+..+.   ..++| +++++||+|+.+.
T Consensus        85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~---~~gi~~iIV~vNKmD~~~~  160 (447)
T PLN00043         85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAF---TLGVKQMICCCNKMDATTP  160 (447)
T ss_pred             EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHH---HcCCCcEEEEEEcccCCch
Confidence            6789999999999998888889999999999999873 232       2222222222   24574 6888999998521


Q ss_pred             CC-----ccCHHHHHHHHHHhC-----CcEEEEcCCCCCCHHH
Q 028686          124 KR-----AVPTSKGQALADEYG-----IKFFETSAKTNLNVEQ  156 (205)
Q Consensus       124 ~~-----~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~  156 (205)
                      ..     ....++++.++.+.+     ++++++||++|+|+.+
T Consensus       161 ~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        161 KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            11     122455667777665     6799999999999864

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.68  E-value=1.5e-15  Score=116.37  Aligned_cols=166  Identities=14%  Similarity=0.103  Sum_probs=104.9

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh------------hhhhhh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER------------FRTITT   70 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~------------~~~~~~   70 (205)
                      -++|+++|.||+|||||.|.+++.++......+.+.... ..--+.....++.|+||||...            +.....
T Consensus        72 ~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~-ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~  150 (379)
T KOG1423|consen   72 SLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHR-ILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPR  150 (379)
T ss_pred             EEEEEEEcCCCcchhhhhhHhhCCccccccccccceeee-eeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHH
Confidence            378999999999999999999999865443332221111 1112223456899999999421            111234


Q ss_pred             hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC------------CccCHHHHHHHHHH
Q 028686           71 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK------------RAVPTSKGQALADE  138 (205)
Q Consensus        71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~------------~~~~~~~~~~~~~~  138 (205)
                      ..+.+||.+++|+|+++.-.... .+.+..+..+  ..+|-++|.||.|.....            ..+.. -..++.++
T Consensus       151 ~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y--s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~-~kl~v~~~  226 (379)
T KOG1423|consen  151 DAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY--SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAK-LKLEVQEK  226 (379)
T ss_pred             HHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH--hcCCceeeccchhcchhhhHHhhhHHhccccccch-hhhhHHHH
Confidence            45678999999999997332222 1234445555  358999999999964311            11110 01122222


Q ss_pred             h-------------CC----cEEEEcCCCCCCHHHHHHHHHHHHHHHhcccC
Q 028686          139 Y-------------GI----KFFETSAKTNLNVEQVFFSIARDIKQRLADTD  173 (205)
Q Consensus       139 ~-------------~~----~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~~~~  173 (205)
                      +             |+    .+|.+||++|+||+++-++|...+....-+++
T Consensus       227 f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~  278 (379)
T KOG1423|consen  227 FTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYP  278 (379)
T ss_pred             hccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCC
Confidence            2             12    38999999999999999999988766544443

>CHL00071 tufA elongation factor Tu

Probab=99.68  E-value=1.5e-15  Score=124.94  Aligned_cols=147  Identities=17%  Similarity=0.104  Sum_probs=95.0

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCC----------------CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhh
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF   65 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   65 (205)
                      ..++|+++|.+++|||||+++|++..-                ..+..+....+...  ..+......+.++||||+.+|
T Consensus        11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~--~~~~~~~~~~~~iDtPGh~~~   88 (409)
T CHL00071         11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAH--VEYETENRHYAHVDCPGHADY   88 (409)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccE--EEEccCCeEEEEEECCChHHH
Confidence            358999999999999999999987411                11112333333222  233333456789999999888


Q ss_pred             hhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCC--ccCHHHHHHHHHHhC--
Q 028686           66 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR--AVPTSKGQALADEYG--  140 (205)
Q Consensus        66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~--  140 (205)
                      .......+..+|++++|+|+..... ......+..+..   .++| +++++||+|+.+.+.  +...+++..+....+  
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~  164 (409)
T CHL00071         89 VKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFP  164 (409)
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            7666677789999999999986421 222223333332   3578 678899999864221  112234555555443  


Q ss_pred             ---CcEEEEcCCCCCCH
Q 028686          141 ---IKFFETSAKTNLNV  154 (205)
Q Consensus       141 ---~~~~~~Sa~~~~gi  154 (205)
                         ++++.+||.+|.++
T Consensus       165 ~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        165 GDDIPIVSGSALLALEA  181 (409)
T ss_pred             CCcceEEEcchhhcccc
Confidence               68999999998743

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.67  E-value=5.5e-16  Score=120.95  Aligned_cols=142  Identities=18%  Similarity=0.219  Sum_probs=89.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCc------------------ccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTSF------------------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR   66 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~------------------~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   66 (205)
                      +|+++|.+|+|||||+++|+...-....                  ............+.+++  ..+.+|||||+.++.
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~   78 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV   78 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence            5899999999999999999764211000                  00111112222333443  678999999999888


Q ss_pred             hhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEE
Q 028686           67 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET  146 (205)
Q Consensus        67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (205)
                      ......+..+|++++|+|+++.........| ..+..   .++|.++++||+|+....   ..+....+...++.+++.+
T Consensus        79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~---~~~p~iivvNK~D~~~~~---~~~~~~~l~~~~~~~~~~~  151 (268)
T cd04170          79 GETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE---AGIPRIIFINKMDRERAD---FDKTLAALQEAFGRPVVPL  151 (268)
T ss_pred             HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCccCCCC---HHHHHHHHHHHhCCCeEEE
Confidence            7788889999999999999886544322222 33332   468999999999986431   2233344445555444433


Q ss_pred             --cCCCCCCHH
Q 028686          147 --SAKTNLNVE  155 (205)
Q Consensus       147 --Sa~~~~gi~  155 (205)
                        ...++.++.
T Consensus       152 ~ip~~~~~~~~  162 (268)
T cd04170         152 QLPIGEGDDFK  162 (268)
T ss_pred             EecccCCCcee
Confidence              344544443

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.67  E-value=1.7e-15  Score=117.84  Aligned_cols=113  Identities=19%  Similarity=0.108  Sum_probs=78.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC--CC----------------CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS--FT----------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR   66 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~--~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   66 (205)
                      +|+++|.+++|||||+++|+...  ..                .+..+.+..+.....+.++  ..++.+|||||+.++.
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG~~df~   78 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWK--DHRINIIDTPGHVDFT   78 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEEC--CEEEEEEECCCcHHHH
Confidence            58999999999999999997521  10                1112222223333344444  4678999999999888


Q ss_pred             hhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028686           67 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES  123 (205)
Q Consensus        67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~  123 (205)
                      ..+...++.+|++++|+|+.+...- ....++..+..   .++|+++++||+|+.+.
T Consensus        79 ~~~~~~l~~aD~ailVVDa~~g~~~-~t~~~~~~~~~---~~~p~ivviNK~D~~~a  131 (270)
T cd01886          79 IEVERSLRVLDGAVAVFDAVAGVEP-QTETVWRQADR---YNVPRIAFVNKMDRTGA  131 (270)
T ss_pred             HHHHHHHHHcCEEEEEEECCCCCCH-HHHHHHHHHHH---cCCCEEEEEECCCCCCC
Confidence            8888899999999999999874221 11223333332   45899999999998653

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.67  E-value=1.7e-15  Score=127.58  Aligned_cols=116  Identities=16%  Similarity=0.121  Sum_probs=78.4

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCC--CCC----------C-c-------ccceeeEEEEEEEEECCEEEEEEEEeCCCh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGS--FTT----------S-F-------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   62 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~--~~~----------~-~-------~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~   62 (205)
                      ..+|+++|.+++|||||+++|+...  ...          . .       ...-+..+......+....+.+.+|||||+
T Consensus        10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~   89 (526)
T PRK00741         10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGH   89 (526)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCc
Confidence            4589999999999999999997421  100          0 0       001122233332333334578999999999


Q ss_pred             hhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686           63 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  122 (205)
Q Consensus        63 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~  122 (205)
                      .+|.......++.+|++|+|+|+++... .....++.....   .++|+++++||+|+..
T Consensus        90 ~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~iPiiv~iNK~D~~~  145 (526)
T PRK00741         90 EDFSEDTYRTLTAVDSALMVIDAAKGVE-PQTRKLMEVCRL---RDTPIFTFINKLDRDG  145 (526)
T ss_pred             hhhHHHHHHHHHHCCEEEEEEecCCCCC-HHHHHHHHHHHh---cCCCEEEEEECCcccc
Confidence            9988777778899999999999987421 123334443332   4699999999999754

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.67  E-value=1.4e-15  Score=126.90  Aligned_cols=152  Identities=20%  Similarity=0.107  Sum_probs=93.8

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCC--CC-------------------------------CcccceeeEEEEEEEEEC
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSF--TT-------------------------------SFITTIGIDFKIRTIELD   48 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~--~~-------------------------------~~~~t~~~~~~~~~~~~~   48 (205)
                      ..++|+++|..++|||||+++|+...-  ..                               +......++.....+.. 
T Consensus        26 ~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~-  104 (474)
T PRK05124         26 SLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST-  104 (474)
T ss_pred             CceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc-
Confidence            458999999999999999999976431  11                               00111222333333333 


Q ss_pred             CEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccC
Q 028686           49 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP  128 (205)
Q Consensus        49 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~  128 (205)
                       ....+.+|||||+++|.......+..+|++++|+|+...-.- .....+..+... . ..|+++++||+|+.+.+....
T Consensus       105 -~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~-qt~~~~~l~~~l-g-~~~iIvvvNKiD~~~~~~~~~  180 (474)
T PRK05124        105 -EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLD-QTRRHSFIATLL-G-IKHLVVAVNKMDLVDYSEEVF  180 (474)
T ss_pred             -CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccc-cchHHHHHHHHh-C-CCceEEEEEeeccccchhHHH
Confidence             345789999999998865555556899999999999764211 111111122221 1 247889999999864222111


Q ss_pred             ---HHHHHHHHHHh----CCcEEEEcCCCCCCHHHHH
Q 028686          129 ---TSKGQALADEY----GIKFFETSAKTNLNVEQVF  158 (205)
Q Consensus       129 ---~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~~~  158 (205)
                         .+++..+....    .++++++||++|.|++++-
T Consensus       181 ~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~  217 (474)
T PRK05124        181 ERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS  217 (474)
T ss_pred             HHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence               12222333333    3789999999999998653

>PRK13351 elongation factor G; Reviewed

Probab=99.67  E-value=9e-16  Score=133.90  Aligned_cols=112  Identities=18%  Similarity=0.148  Sum_probs=80.8

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCC--------CC------------CcccceeeEEEEEEEEECCEEEEEEEEeCCCh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSF--------TT------------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   62 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~--------~~------------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~   62 (205)
                      ..+|+++|..++|||||+++|+...-        ..            .+..|..  .....+.++  ...+.+|||||+
T Consensus         8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~--~~~~~~~~~--~~~i~liDtPG~   83 (687)
T PRK13351          8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIE--SAATSCDWD--NHRINLIDTPGH   83 (687)
T ss_pred             ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcc--cceEEEEEC--CEEEEEEECCCc
Confidence            46999999999999999999985321        00            0111221  222233343  478999999999


Q ss_pred             hhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686           63 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  122 (205)
Q Consensus        63 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~  122 (205)
                      .++...+..+++.+|++++|+|+++.........| ..+..   .++|+++++||+|+..
T Consensus        84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~  139 (687)
T PRK13351         84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG  139 (687)
T ss_pred             HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence            99988889999999999999999987655544333 33332   4689999999999865

>TIGR00503 prfC peptide chain release factor 3

Probab=99.66  E-value=3.3e-15  Score=125.86  Aligned_cols=115  Identities=17%  Similarity=0.139  Sum_probs=78.5

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCC--CCCC------------------cccceeeEEEEEEEEECCEEEEEEEEeCCCh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGS--FTTS------------------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   62 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~--~~~~------------------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~   62 (205)
                      ..+|+++|.+++|||||+++|+...  ....                  ....-+..+......++...+.+.+|||||+
T Consensus        11 ~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~   90 (527)
T TIGR00503        11 RRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGH   90 (527)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCCh
Confidence            4689999999999999999986421  1100                  0011122333333444445588999999999


Q ss_pred             hhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028686           63 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD  121 (205)
Q Consensus        63 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~  121 (205)
                      .+|.......+..+|++|+|+|+++.- ......+++....   .++|+++++||+|+.
T Consensus        91 ~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~~---~~~PiivviNKiD~~  145 (527)
T TIGR00503        91 EDFSEDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLMEVTRL---RDTPIFTFMNKLDRD  145 (527)
T ss_pred             hhHHHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHHHHHh---cCCCEEEEEECcccc
Confidence            988876677888999999999998741 1223334443332   468999999999974

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.66  E-value=1.4e-15  Score=124.18  Aligned_cols=160  Identities=23%  Similarity=0.207  Sum_probs=115.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCC---------------CCCCcccceeeEEEEEEE-EECCEEEEEEEEeCCChhhhhh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGS---------------FTTSFITTIGIDFKIRTI-ELDGKRIKLQIWDTAGQERFRT   67 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~---------------~~~~~~~t~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~~~   67 (205)
                      -++.++-.-..|||||..+|+...               .+.+....++.-.....+ ..+++.+.+.++|||||.+|..
T Consensus        61 RNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~  140 (650)
T KOG0462|consen   61 RNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSG  140 (650)
T ss_pred             cceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccc
Confidence            367889999999999999996532               111233333322222222 2236778999999999999999


Q ss_pred             hhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEc
Q 028686           68 ITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETS  147 (205)
Q Consensus        68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S  147 (205)
                      ...+.+..++++++|+|++..-.-..+..++..+    ..+..+|.|+||+|++.++.+....++.++....+.+++.+|
T Consensus       141 EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAf----e~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vS  216 (650)
T KOG0462|consen  141 EVSRSLAACDGALLVVDASQGVQAQTVANFYLAF----EAGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYVS  216 (650)
T ss_pred             eehehhhhcCceEEEEEcCcCchHHHHHHHHHHH----HcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEEE
Confidence            9999999999999999999853323232223222    256889999999999876555555555555555567899999


Q ss_pred             CCCCCCHHHHHHHHHHHHHH
Q 028686          148 AKTNLNVEQVFFSIARDIKQ  167 (205)
Q Consensus       148 a~~~~gi~~~~~~i~~~~~~  167 (205)
                      |++|.|++++++.+++.+..
T Consensus       217 AK~G~~v~~lL~AII~rVPp  236 (650)
T KOG0462|consen  217 AKTGLNVEELLEAIIRRVPP  236 (650)
T ss_pred             eccCccHHHHHHHHHhhCCC
Confidence            99999999999999988754

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.66  E-value=2.1e-15  Score=123.98  Aligned_cols=148  Identities=23%  Similarity=0.151  Sum_probs=92.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCC--CC-------------------------------CcccceeeEEEEEEEEECCE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSF--TT-------------------------------SFITTIGIDFKIRTIELDGK   50 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~--~~-------------------------------~~~~t~~~~~~~~~~~~~~~   50 (205)
                      +||+++|..++|||||+.+|+...-  ..                               +.......+.....+..+  
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~--   78 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTD--   78 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccC--
Confidence            5899999999999999999975421  10                               011111223333333333  


Q ss_pred             EEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccC--
Q 028686           51 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP--  128 (205)
Q Consensus        51 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~--  128 (205)
                      ...+.+|||||+++|.......+..+|++++|+|+.....- .....+..+...  ...++++++||+|+.+.+....  
T Consensus        79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~-qt~~~~~~~~~~--~~~~iivviNK~D~~~~~~~~~~~  155 (406)
T TIGR02034        79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLE-QTRRHSYIASLL--GIRHVVLAVNKMDLVDYDEEVFEN  155 (406)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcc-ccHHHHHHHHHc--CCCcEEEEEEecccccchHHHHHH
Confidence            35789999999998876666677899999999999764211 111111222221  1236888999999864222111  


Q ss_pred             -HHHHHHHHHHhC---CcEEEEcCCCCCCHHH
Q 028686          129 -TSKGQALADEYG---IKFFETSAKTNLNVEQ  156 (205)
Q Consensus       129 -~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~  156 (205)
                       .++...+....+   ++++++||++|.|+++
T Consensus       156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence             122333334433   5799999999999986

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.66  E-value=2.6e-15  Score=116.71  Aligned_cols=164  Identities=16%  Similarity=0.123  Sum_probs=108.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh----hhhhhhh---hccCCc
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTA---YYRGAM   77 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~---~~~~~d   77 (205)
                      .|.++|.|++|||||++.+...+......|.++.....-.+.+. ..-.+.+-|.||.-+    -..+-..   .+.++-
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~-~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~  239 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVD-GGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR  239 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEec-CCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence            57899999999999999999987543333333322222233332 223588889998432    1222222   345788


Q ss_pred             EEEEEEeCCChh---HHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEE-EcCCCC
Q 028686           78 GILLVYDVTDES---SFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFE-TSAKTN  151 (205)
Q Consensus        78 ~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~Sa~~~  151 (205)
                      ++++|+|++..+   ..++......++..+..  .+.|.+||+||+|++.+ .+...+....+.+..++..+. +|+.++
T Consensus       240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~-~e~~~~~~~~l~~~~~~~~~~~ISa~t~  318 (369)
T COG0536         240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLD-EEELEELKKALAEALGWEVFYLISALTR  318 (369)
T ss_pred             eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcC-HHHHHHHHHHHHHhcCCCcceeeehhcc
Confidence            999999998644   46666666777766542  57899999999997542 212222233344444543222 999999


Q ss_pred             CCHHHHHHHHHHHHHHHhc
Q 028686          152 LNVEQVFFSIARDIKQRLA  170 (205)
Q Consensus       152 ~gi~~~~~~i~~~~~~~~~  170 (205)
                      .|++++...+.+.+.+...
T Consensus       319 ~g~~~L~~~~~~~l~~~~~  337 (369)
T COG0536         319 EGLDELLRALAELLEETKA  337 (369)
T ss_pred             cCHHHHHHHHHHHHHHhhh
Confidence            9999999999998887753

>PLN03126 Elongation factor Tu; Provisional

Probab=99.65  E-value=7.7e-15  Score=122.21  Aligned_cols=146  Identities=17%  Similarity=0.091  Sum_probs=95.1

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCC------C----------CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhh
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGS------F----------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF   65 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~------~----------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   65 (205)
                      ..++|+++|.+++|||||+++|++..      .          ..+.......+.....+..++  ..+.++|+||+.+|
T Consensus        80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--~~i~liDtPGh~~f  157 (478)
T PLN03126         80 PHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHADY  157 (478)
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCC--cEEEEEECCCHHHH
Confidence            35899999999999999999998621      0          112223333333333333333  56899999999998


Q ss_pred             hhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCC--ccCHHHHHHHHHHh---
Q 028686           66 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR--AVPTSKGQALADEY---  139 (205)
Q Consensus        66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~Dl~~~~~--~~~~~~~~~~~~~~---  139 (205)
                      .......+..+|++++|+|+.+... .....++..+..   .++| +++++||+|+.+.+.  +...+++..+....   
T Consensus       158 ~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~  233 (478)
T PLN03126        158 VKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFP  233 (478)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCC
Confidence            7777777788999999999886422 222233333332   3577 778899999864211  11122445555443   


Q ss_pred             --CCcEEEEcCCCCCC
Q 028686          140 --GIKFFETSAKTNLN  153 (205)
Q Consensus       140 --~~~~~~~Sa~~~~g  153 (205)
                        +++++.+|+.++.+
T Consensus       234 ~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        234 GDDIPIISGSALLALE  249 (478)
T ss_pred             cCcceEEEEEcccccc
Confidence              47899999988853

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.65  E-value=8.8e-15  Score=116.02  Aligned_cols=81  Identities=17%  Similarity=0.272  Sum_probs=56.7

Q ss_pred             EEEECCCCCcHHHHHHHHHhCCCC------CCcccceeeEEEEEE---------------EEECC-EEEEEEEEeCCCh-
Q 028686            6 RIYFERGGVGKSCLLLRFSDGSFT------TSFITTIGIDFKIRT---------------IELDG-KRIKLQIWDTAGQ-   62 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~~~------~~~~~t~~~~~~~~~---------------~~~~~-~~~~~~i~D~~g~-   62 (205)
                      |+++|.|+||||||+++|.+....      .+..|+.|..+....               ...++ +.+.+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            579999999999999999988743      222344443333211               01222 3478999999997 


Q ss_pred             ---hhhhhhhhhh---ccCCcEEEEEEeCC
Q 028686           63 ---ERFRTITTAY---YRGAMGILLVYDVT   86 (205)
Q Consensus        63 ---~~~~~~~~~~---~~~~d~~i~v~d~~   86 (205)
                         ++...+...+   ++++|++++|+|+.
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence               4455555554   88999999999997

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.64  E-value=9.3e-15  Score=119.56  Aligned_cols=157  Identities=18%  Similarity=0.148  Sum_probs=113.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEe
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   84 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   84 (205)
                      =|.++|.-.-|||||+..|-+..+.......++....-..+.+... -.++|.||||+..|..|..+-..-+|++++|+.
T Consensus       155 VVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVA  233 (683)
T KOG1145|consen  155 VVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIVVLVVA  233 (683)
T ss_pred             eEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEEEEEEE
Confidence            3789999999999999999888776555554544444444544422 568899999999999999988889999999999


Q ss_pred             CCC---hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHH---HHHHhC--CcEEEEcCCCCCCHHH
Q 028686           85 VTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQA---LADEYG--IKFFETSAKTNLNVEQ  156 (205)
Q Consensus        85 ~~~---~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~---~~~~~~--~~~~~~Sa~~~~gi~~  156 (205)
                      ++|   +++.       +.|......++|++|.+||+|.++.+..-...++..   ....+|  ++++++||++|+|++.
T Consensus       234 adDGVmpQT~-------EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~  306 (683)
T KOG1145|consen  234 ADDGVMPQTL-------EAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDL  306 (683)
T ss_pred             ccCCccHhHH-------HHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHH
Confidence            988   4444       444444457899999999999765322111111111   122333  7899999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 028686          157 VFFSIARDIKQRL  169 (205)
Q Consensus       157 ~~~~i~~~~~~~~  169 (205)
                      |-+.++-.+.-+.
T Consensus       307 L~eaill~Ae~md  319 (683)
T KOG1145|consen  307 LEEAILLLAEVMD  319 (683)
T ss_pred             HHHHHHHHHHHhh
Confidence            9988777665443

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.64  E-value=2.8e-15  Score=124.30  Aligned_cols=149  Identities=16%  Similarity=0.086  Sum_probs=96.1

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCC--CC-----------------------------CCcccceeeEEEEEEEEECCEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGS--FT-----------------------------TSFITTIGIDFKIRTIELDGKR   51 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~--~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~   51 (205)
                      .++|+++|..++|||||+.+|+...  ..                             ++.......+.....+  ....
T Consensus         7 ~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~--~~~~   84 (446)
T PTZ00141          7 HINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKF--ETPK   84 (446)
T ss_pred             eEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEE--ccCC
Confidence            4889999999999999999997621  10                             1112222333333333  3344


Q ss_pred             EEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChh---HH---HHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCC
Q 028686           52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SF---NNIRNWIRNIEQHASDNVN-KVLVGNKADMDESK  124 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~p-iiiv~nK~Dl~~~~  124 (205)
                      ..+.++|+||+.+|.......+..+|++++|+|++...   .|   ......+..+..   .++| +|+++||+|.....
T Consensus        85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~---~gi~~iiv~vNKmD~~~~~  161 (446)
T PTZ00141         85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT---LGVKQMIVCINKMDDKTVN  161 (446)
T ss_pred             eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH---cCCCeEEEEEEccccccch
Confidence            67899999999999877777788999999999998642   11   122222233322   3566 67899999953211


Q ss_pred             -----CccCHHHHHHHHHHhC-----CcEEEEcCCCCCCHHH
Q 028686          125 -----RAVPTSKGQALADEYG-----IKFFETSAKTNLNVEQ  156 (205)
Q Consensus       125 -----~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~  156 (205)
                           .....+++..+....+     ++++.+|+.+|+|+.+
T Consensus       162 ~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        162 YSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             hhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence                 1122333444444333     6799999999999864

>PRK00049 elongation factor Tu; Reviewed

Probab=99.63  E-value=1.2e-14  Score=119.18  Aligned_cols=157  Identities=16%  Similarity=0.122  Sum_probs=98.9

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCC----------------CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhh
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF   65 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   65 (205)
                      ..++|+++|..++|||||+++|++...                ..+..+....+..  ...+......+.++||||+.+|
T Consensus        11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~--~~~~~~~~~~i~~iDtPG~~~f   88 (396)
T PRK00049         11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTA--HVEYETEKRHYAHVDCPGHADY   88 (396)
T ss_pred             CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeee--EEEEcCCCeEEEEEECCCHHHH
Confidence            458999999999999999999987310                0111233333333  3333333456889999999887


Q ss_pred             hhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCCCCc--cCHHHHHHHHHHh---
Q 028686           66 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKV-LVGNKADMDESKRA--VPTSKGQALADEY---  139 (205)
Q Consensus        66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-iv~nK~Dl~~~~~~--~~~~~~~~~~~~~---  139 (205)
                      .......+..+|++++|+|+..... .....++..+..   .++|.+ +++||+|+.+....  ....++..+....   
T Consensus        89 ~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~  164 (396)
T PRK00049         89 VKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP  164 (396)
T ss_pred             HHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence            7666667789999999999987422 222233333333   357876 57999998642111  1122344444433   


Q ss_pred             --CCcEEEEcCCCCC----------CHHHHHHHHHHH
Q 028686          140 --GIKFFETSAKTNL----------NVEQVFFSIARD  164 (205)
Q Consensus       140 --~~~~~~~Sa~~~~----------gi~~~~~~i~~~  164 (205)
                        +++++.+||+++.          ++.++++.|...
T Consensus       165 ~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~  201 (396)
T PRK00049        165 GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY  201 (396)
T ss_pred             ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence              3689999999875          345555555543

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.63  E-value=1.3e-14  Score=99.12  Aligned_cols=105  Identities=23%  Similarity=0.264  Sum_probs=68.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCC-CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh----------hhhhhhhhc
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTITTAYY   73 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~   73 (205)
                      +|+|+|.+|+|||||+|+|++... .....+..........+.+++..  +.++||||...          ...... .+
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~-~~   77 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLE-QI   77 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHH-HH
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHH-HH
Confidence            689999999999999999998643 11222222222333455566644  57999999532          112233 34


Q ss_pred             cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 028686           74 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNK  117 (205)
Q Consensus        74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK  117 (205)
                      ..+|++++|+|.+++.. +....+++.+.    .+.|+++|+||
T Consensus        78 ~~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK  116 (116)
T PF01926_consen   78 SKSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK  116 (116)
T ss_dssp             CTESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred             HHCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence            78999999999877422 22233334442    46899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.62  E-value=5.7e-15  Score=127.69  Aligned_cols=150  Identities=23%  Similarity=0.135  Sum_probs=93.0

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCC---------------------------------cccceeeEEEEEEEEEC
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTS---------------------------------FITTIGIDFKIRTIELD   48 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~---------------------------------~~~t~~~~~~~~~~~~~   48 (205)
                      ..++|+++|.+++|||||+++|+...-...                                 .......+.....+..+
T Consensus        23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~  102 (632)
T PRK05506         23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP  102 (632)
T ss_pred             CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence            358999999999999999999986431100                                 00111112222223333


Q ss_pred             CEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCcc-
Q 028686           49 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAV-  127 (205)
Q Consensus        49 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~-  127 (205)
                        ...+.++||||+++|.......+..+|++++|+|+.....- .....+..+...  ...|++|++||+|+.+.+... 
T Consensus       103 --~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~-~t~e~~~~~~~~--~~~~iivvvNK~D~~~~~~~~~  177 (632)
T PRK05506        103 --KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLT-QTRRHSFIASLL--GIRHVVLAVNKMDLVDYDQEVF  177 (632)
T ss_pred             --CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccc-cCHHHHHHHHHh--CCCeEEEEEEecccccchhHHH
Confidence              35678999999998766555667899999999999764221 111112222222  125788899999986422211 


Q ss_pred             --CHHHHHHHHHHhC---CcEEEEcCCCCCCHHH
Q 028686          128 --PTSKGQALADEYG---IKFFETSAKTNLNVEQ  156 (205)
Q Consensus       128 --~~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~  156 (205)
                        ...++.++....+   ++++++||++|.|+++
T Consensus       178 ~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        178 DEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence              1122333344444   4699999999999884

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.61  E-value=9.7e-15  Score=117.73  Aligned_cols=157  Identities=24%  Similarity=0.239  Sum_probs=111.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCC---------------CCCCcccceeeEEEEEEEEE---CCEEEEEEEEeCCChhhh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGS---------------FTTSFITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQERF   65 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~---------------~~~~~~~t~~~~~~~~~~~~---~~~~~~~~i~D~~g~~~~   65 (205)
                      -+..++..-..|||||..||+...               .+-+....+++-.....+.+   +|..+.++++|||||.+|
T Consensus        10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF   89 (603)
T COG0481          10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF   89 (603)
T ss_pred             cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence            357888888999999999996532               11123333332222222322   567899999999999998


Q ss_pred             hhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC---Cc
Q 028686           66 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG---IK  142 (205)
Q Consensus        66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~  142 (205)
                      .-...+.+..|.++++|+|++..-.-..+...+..+.    .+.-++-|+||+||+.++.+-..   +++..-.|   -.
T Consensus        90 sYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle----~~LeIiPViNKIDLP~Adpervk---~eIe~~iGid~~d  162 (603)
T COG0481          90 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPAADPERVK---QEIEDIIGIDASD  162 (603)
T ss_pred             EEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH----cCcEEEEeeecccCCCCCHHHHH---HHHHHHhCCCcch
Confidence            8777888888999999999998543334434444443    46889999999999865443333   33444455   35


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHHHH
Q 028686          143 FFETSAKTNLNVEQVFFSIARDIKQ  167 (205)
Q Consensus       143 ~~~~Sa~~~~gi~~~~~~i~~~~~~  167 (205)
                      .+.+||++|.||+++++.|++.+..
T Consensus       163 av~~SAKtG~gI~~iLe~Iv~~iP~  187 (603)
T COG0481         163 AVLVSAKTGIGIEDVLEAIVEKIPP  187 (603)
T ss_pred             heeEecccCCCHHHHHHHHHhhCCC
Confidence            7899999999999999999988754

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.61  E-value=2.7e-15  Score=108.98  Aligned_cols=115  Identities=18%  Similarity=0.328  Sum_probs=71.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEE-CCEEEEEEEEeCCChhhhhhhhhh---hccCCcEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTA---YYRGAMGI   79 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~---~~~~~d~~   79 (205)
                      -.|+++|++|+|||+|..+|..+....+..+. .....   ..+ +...-.+.++|+||+.+.+.....   +...+.++
T Consensus         4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~---~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I   79 (181)
T PF09439_consen    4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIA---YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI   79 (181)
T ss_dssp             -EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEE---CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred             ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCce---EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence            35899999999999999999999765554443 22221   111 122335889999999987754433   47789999


Q ss_pred             EEEEeCCC-hhHHHHHHH-HHHHHHhhc--CCCCcEEEEEeCCCCCC
Q 028686           80 LLVYDVTD-ESSFNNIRN-WIRNIEQHA--SDNVNKVLVGNKADMDE  122 (205)
Q Consensus        80 i~v~d~~~-~~s~~~~~~-~~~~i~~~~--~~~~piiiv~nK~Dl~~  122 (205)
                      |||+|.+. ...+.++.. ++..+....  ...+|++|+.||.|+..
T Consensus        80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~  126 (181)
T PF09439_consen   80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT  126 (181)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred             EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence            99999974 444554443 444443322  36799999999999865

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PLN03127 Elongation factor Tu; Provisional

Probab=99.60  E-value=2.5e-14  Score=118.54  Aligned_cols=158  Identities=16%  Similarity=0.079  Sum_probs=95.5

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhC------CC----------CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhh
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDG------SF----------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF   65 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~------~~----------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   65 (205)
                      ..++|+++|..++|||||+++|.+.      ..          ..+..+....+.....  +......+.++||||+.+|
T Consensus        60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~--~~~~~~~i~~iDtPGh~~f  137 (447)
T PLN03127         60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVE--YETAKRHYAHVDCPGHADY  137 (447)
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEE--EcCCCeEEEEEECCCccch
Confidence            3589999999999999999999632      10          1122233333433333  3333456899999999887


Q ss_pred             hhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCC--ccCHHHHHHHHHHh---
Q 028686           66 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR--AVPTSKGQALADEY---  139 (205)
Q Consensus        66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~Dl~~~~~--~~~~~~~~~~~~~~---  139 (205)
                      ..........+|++++|+|+.+... ......+..+..   .++| +++++||+|+.+.+.  +....++.++....   
T Consensus       138 ~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~  213 (447)
T PLN03127        138 VKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFP  213 (447)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            6555555667999999999976421 112222233332   4588 567899999864211  00112333333322   


Q ss_pred             --CCcEEEEcCC---CCCC-------HHHHHHHHHHHH
Q 028686          140 --GIKFFETSAK---TNLN-------VEQVFFSIARDI  165 (205)
Q Consensus       140 --~~~~~~~Sa~---~~~g-------i~~~~~~i~~~~  165 (205)
                        .++++.+|+.   ++.|       +.++++.+...+
T Consensus       214 ~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l  251 (447)
T PLN03127        214 GDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI  251 (447)
T ss_pred             CCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence              2678888876   4444       566666665543

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.60  E-value=5.1e-14  Score=108.87  Aligned_cols=153  Identities=20%  Similarity=0.155  Sum_probs=107.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhh----h---hhhhhhccCC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF----R---TITTAYYRGA   76 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~---~~~~~~~~~~   76 (205)
                      -.++++|.|++|||||++.|.+.+......+.++.+..+--+.+++  .++++.|+||.-.-    +   ...-..+++|
T Consensus        64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R~A  141 (365)
T COG1163          64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVARNA  141 (365)
T ss_pred             eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeeccC
Confidence            4689999999999999999999886655455444445555556655  77999999984321    1   2345568899


Q ss_pred             cEEEEEEeCCChhH-HHHHHHHHHHHHhhcC-------------------------------------------------
Q 028686           77 MGILLVYDVTDESS-FNNIRNWIRNIEQHAS-------------------------------------------------  106 (205)
Q Consensus        77 d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~-------------------------------------------------  106 (205)
                      |++++|+|+....+ .+.+...+...-...+                                                 
T Consensus       142 DlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir  221 (365)
T COG1163         142 DLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIR  221 (365)
T ss_pred             CEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEe
Confidence            99999999986554 4444333322100000                                                 


Q ss_pred             ----------------CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHHHHH
Q 028686          107 ----------------DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIK  166 (205)
Q Consensus       107 ----------------~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~  166 (205)
                                      .=+|.++|.||.|+..      .++...+.+..  .++.+||..+.|++++.+.|-+.+.
T Consensus       222 ~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~------~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~  289 (365)
T COG1163         222 EDVTLDDLIDALEGNRVYKPALYVVNKIDLPG------LEELERLARKP--NSVPISAKKGINLDELKERIWDVLG  289 (365)
T ss_pred             cCCcHHHHHHHHhhcceeeeeEEEEecccccC------HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence                            0257789999999853      35555555544  7899999999999999999888764

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.59  E-value=1.3e-14  Score=117.52  Aligned_cols=165  Identities=21%  Similarity=0.176  Sum_probs=110.3

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh-hh--------hhhhhh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FR--------TITTAY   72 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~--------~~~~~~   72 (205)
                      -+.|+++|.||+|||||+|.|.+.+.. ....|.++.|.....++++|  +++.+.||+|-.+ -.        ......
T Consensus       268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~  345 (531)
T KOG1191|consen  268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARKR  345 (531)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHHH
Confidence            378999999999999999999998743 45556666677778888888  6789999999543 11        113445


Q ss_pred             ccCCcEEEEEEeCC--ChhHHHHHHHHHHHHHhhc------CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC---C
Q 028686           73 YRGAMGILLVYDVT--DESSFNNIRNWIRNIEQHA------SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG---I  141 (205)
Q Consensus        73 ~~~~d~~i~v~d~~--~~~s~~~~~~~~~~i~~~~------~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~  141 (205)
                      +..+|++++|+|+.  +-++-..+...++......      ....|++++.||.|+...-....... ..+....+   .
T Consensus       346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~-~~~~~~~~~~~~  424 (531)
T KOG1191|consen  346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIP-VVYPSAEGRSVF  424 (531)
T ss_pred             HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCc-eeccccccCccc
Confidence            67899999999993  3333333333333332211      13479999999999865311111111 11111122   2


Q ss_pred             -cEEEEcCCCCCCHHHHHHHHHHHHHHHhc
Q 028686          142 -KFFETSAKTNLNVEQVFFSIARDIKQRLA  170 (205)
Q Consensus       142 -~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~  170 (205)
                       .+.++|+++++|++.+.+.+...+.....
T Consensus       425 ~i~~~vs~~tkeg~~~L~~all~~~~~~~~  454 (531)
T KOG1191|consen  425 PIVVEVSCTTKEGCERLSTALLNIVERLVV  454 (531)
T ss_pred             ceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence             34569999999999999999988876554

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.59  E-value=1.8e-14  Score=119.39  Aligned_cols=162  Identities=12%  Similarity=0.091  Sum_probs=100.3

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCC---CCCcccceeeE--EEEEE-------------EEECC---------------
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSF---TTSFITTIGID--FKIRT-------------IELDG---------------   49 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~---~~~~~~t~~~~--~~~~~-------------~~~~~---------------   49 (205)
                      .++|.++|.-..|||||+.+|.+...   .++.......+  |....             .....               
T Consensus        34 ~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (460)
T PTZ00327         34 TINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKM  113 (460)
T ss_pred             cEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccccc
Confidence            37899999999999999999987532   11211111111  11000             00000               


Q ss_pred             -EEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC-cc
Q 028686           50 -KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-AV  127 (205)
Q Consensus        50 -~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~-~~  127 (205)
                       ....+.++|+||+++|......-+..+|++++|+|+++.-.-......+..+. .. .-.|+++++||+|+.+... ..
T Consensus       114 ~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~-~l-gi~~iIVvlNKiDlv~~~~~~~  191 (460)
T PTZ00327        114 TLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVE-IM-KLKHIIILQNKIDLVKEAQAQD  191 (460)
T ss_pred             cccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHH-Hc-CCCcEEEEEecccccCHHHHHH
Confidence             01357899999999987766667778999999999986311111122222222 21 1246889999999864211 11


Q ss_pred             CHHHHHHHHHH---hCCcEEEEcCCCCCCHHHHHHHHHHHHH
Q 028686          128 PTSKGQALADE---YGIKFFETSAKTNLNVEQVFFSIARDIK  166 (205)
Q Consensus       128 ~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~~~~~i~~~~~  166 (205)
                      ..+++.++...   .+++++++||++|.|+++|++.|.+.+.
T Consensus       192 ~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp  233 (460)
T PTZ00327        192 QYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP  233 (460)
T ss_pred             HHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence            12333333332   2578999999999999999999887553

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.59  E-value=9.8e-14  Score=103.42  Aligned_cols=161  Identities=14%  Similarity=0.156  Sum_probs=97.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCc--ccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh--------hh---hh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSF--ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR--------TI---TT   70 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~---~~   70 (205)
                      ++|+++|.+|+|||||+|.|++.......  .+..+.........+++  ..+.++||||..+..        .+   ..
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            48999999999999999999988643222  11122222233334455  468999999954321        11   12


Q ss_pred             hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCC--CCcEEEEEeCCCCCCCCC-c----cCHHHHHHHHHHhCCcE
Q 028686           71 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD--NVNKVLVGNKADMDESKR-A----VPTSKGQALADEYGIKF  143 (205)
Q Consensus        71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~Dl~~~~~-~----~~~~~~~~~~~~~~~~~  143 (205)
                      ......|++++|+++.. -+-++ ...++.+....++  -.++++++++.|...... +    ......+.+.+..+-.|
T Consensus        79 ~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~  156 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY  156 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence            22457899999999876 22111 2233344333321  257889999988543210 0    01244556666666666


Q ss_pred             EEEcC-----CCCCCHHHHHHHHHHHHHHH
Q 028686          144 FETSA-----KTNLNVEQVFFSIARDIKQR  168 (205)
Q Consensus       144 ~~~Sa-----~~~~gi~~~~~~i~~~~~~~  168 (205)
                      +..+.     ..+.+++++++.+.+.+.++
T Consensus       157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~  186 (196)
T cd01852         157 VAFNNKAKGEEQEQQVKELLAKVESMVKEN  186 (196)
T ss_pred             EEEeCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence            66654     44677889999888888763

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PRK12739 elongation factor G; Reviewed

Probab=99.57  E-value=2.4e-13  Score=118.64  Aligned_cols=114  Identities=18%  Similarity=0.096  Sum_probs=80.2

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCC--C------C----------CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGS--F------T----------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER   64 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~--~------~----------~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   64 (205)
                      ..+|+++|.+++|||||+++|+...  .      .          .+..+.+..+.....+.+++  ..+.++||||+.+
T Consensus         8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~~   85 (691)
T PRK12739          8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPGHVD   85 (691)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCCHHH
Confidence            4689999999999999999997531  1      0          01123333344444455554  6789999999988


Q ss_pred             hhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686           65 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  122 (205)
Q Consensus        65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~  122 (205)
                      +...+...++.+|++++|+|+.+...-.. ...+..+..   .++|+++++||+|+.+
T Consensus        86 f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~---~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         86 FTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK---YGVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence            88788888999999999999987532221 122333332   4689999999999864

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.56  E-value=8.3e-14  Score=121.55  Aligned_cols=115  Identities=19%  Similarity=0.085  Sum_probs=80.7

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCC------------------CcccceeeEEEEEEEEECCEEEEEEEEeCCChhh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTT------------------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER   64 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   64 (205)
                      ..+|+++|.+++|||||+++|+...-..                  +..+.+..+.....+.+++  ..+.+|||||+.+
T Consensus        10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG~~~   87 (689)
T TIGR00484        10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPGHVD   87 (689)
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCCCcc
Confidence            3589999999999999999997532100                  0012223333334444544  6799999999998


Q ss_pred             hhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028686           65 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES  123 (205)
Q Consensus        65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~  123 (205)
                      +.......++.+|++++|+|+.+....... .++..+..   .++|+++++||+|+...
T Consensus        88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~~  142 (689)
T TIGR00484        88 FTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR---YEVPRIAFVNKMDKTGA  142 (689)
T ss_pred             hhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCCEEEEEECCCCCCC
Confidence            877788889999999999999875443322 23333332   45899999999998653

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.55  E-value=2.9e-13  Score=110.45  Aligned_cols=83  Identities=18%  Similarity=0.261  Sum_probs=56.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCC-Cc-----ccceeeEEEEEEE---------------EEC-CEEEEEEEEeCCC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTT-SF-----ITTIGIDFKIRTI---------------ELD-GKRIKLQIWDTAG   61 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~-~~-----~~t~~~~~~~~~~---------------~~~-~~~~~~~i~D~~g   61 (205)
                      ++|+++|.|++|||||+|+|.+..... .+     .|+.|..+....+               ..+ ...+.+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            589999999999999999999887643 22     2223322211100               011 1336799999999


Q ss_pred             h----hhhhhhhhhh---ccCCcEEEEEEeCC
Q 028686           62 Q----ERFRTITTAY---YRGAMGILLVYDVT   86 (205)
Q Consensus        62 ~----~~~~~~~~~~---~~~~d~~i~v~d~~   86 (205)
                      .    .....+...+   ++++|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            4    3344555556   88999999999996

>PRK12740 elongation factor G; Reviewed

Probab=99.53  E-value=1.4e-13  Score=119.92  Aligned_cols=108  Identities=21%  Similarity=0.154  Sum_probs=75.2

Q ss_pred             ECCCCCcHHHHHHHHHhCCCC--C----------------CcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhh
Q 028686            9 FERGGVGKSCLLLRFSDGSFT--T----------------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITT   70 (205)
Q Consensus         9 ~G~~~~GKtsli~~l~~~~~~--~----------------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   70 (205)
                      +|.+++|||||+++|+...-.  .                +..+.+........+.+++  +.+.+|||||+.++...+.
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~   78 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE   78 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence            699999999999999653210  0                0112222333334444544  7799999999998877788


Q ss_pred             hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686           71 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  122 (205)
Q Consensus        71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~  122 (205)
                      ..+..+|++++|+|++......... .+..+..   .++|+++++||+|+..
T Consensus        79 ~~l~~aD~vllvvd~~~~~~~~~~~-~~~~~~~---~~~p~iiv~NK~D~~~  126 (668)
T PRK12740         79 RALRVLDGAVVVVCAVGGVEPQTET-VWRQAEK---YGVPRIIFVNKMDRAG  126 (668)
T ss_pred             HHHHHhCeEEEEEeCCCCcCHHHHH-HHHHHHH---cCCCEEEEEECCCCCC
Confidence            8899999999999998865544332 2233332   4689999999999854

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.53  E-value=1.4e-13  Score=94.62  Aligned_cols=114  Identities=26%  Similarity=0.293  Sum_probs=83.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcc-cceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFI-TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      +||+++|+.|+|||+|+.++....+...+. ++.+                           +......+.+.++.+++|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            589999999999999999998777654333 3333                           223334566778999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE  155 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  155 (205)
                      |+..++++++.+  |...+......++|+++++||.|+.+.. .+..++..        .+++.|++++.|+.
T Consensus        54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~-~~~~~~~~--------~~~~~s~~~~~~~~  115 (124)
T smart00010       54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEER-QVATEEGL--------EFAETSAKTPEEGE  115 (124)
T ss_pred             EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhC-cCCHHHHH--------HHHHHhCCCcchhh
Confidence            999999999776  8888776666678999999999984422 33333332        45567888888874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=3.4e-13  Score=98.47  Aligned_cols=154  Identities=19%  Similarity=0.231  Sum_probs=99.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhcc---CCcEEEE
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR---GAMGILL   81 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---~~d~~i~   81 (205)
                      .|+++|+.+||||+|.-+|..+.....+.+...   ..-...+..  -.++++|.||+++.+.-...++.   .+-+++|
T Consensus        40 ~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiep---n~a~~r~gs--~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF  114 (238)
T KOG0090|consen   40 AVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEP---NEATYRLGS--ENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF  114 (238)
T ss_pred             cEEEEecCCCCceeeeeehhcCCccCeeeeecc---ceeeEeecC--cceEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence            589999999999999999999865443333221   112222322  23789999999988876666666   7999999


Q ss_pred             EEeCCC-hhHHHHH-HHHHHHHHhh--cCCCCcEEEEEeCCCCCCCCCc-----cCHHHHHHHHH---------------
Q 028686           82 VYDVTD-ESSFNNI-RNWIRNIEQH--ASDNVNKVLVGNKADMDESKRA-----VPTSKGQALAD---------------  137 (205)
Q Consensus        82 v~d~~~-~~s~~~~-~~~~~~i~~~--~~~~~piiiv~nK~Dl~~~~~~-----~~~~~~~~~~~---------------  137 (205)
                      |+|... .....++ ..+++-+...  ....+|++|+-||.|+.-+...     ..+.|+..+..               
T Consensus       115 VVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~  194 (238)
T KOG0090|consen  115 VVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAK  194 (238)
T ss_pred             EEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Confidence            999764 2223333 3355555544  2467899999999998543211     01111111111               


Q ss_pred             -----------------HhCCcEEEEcCCCCCCHHHHHHHHHHH
Q 028686          138 -----------------EYGIKFFETSAKTNLNVEQVFFSIARD  164 (205)
Q Consensus       138 -----------------~~~~~~~~~Sa~~~~gi~~~~~~i~~~  164 (205)
                                       ...+.+.++|++++ +++++-+|+.+.
T Consensus       195 ~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  195 DFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             cccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence                             01255788899988 899999998764

>PRK00007 elongation factor G; Reviewed

Probab=99.52  E-value=5.4e-13  Score=116.42  Aligned_cols=114  Identities=18%  Similarity=0.079  Sum_probs=78.0

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhC--CCCC----------------CcccceeeEEEEEEEEECCEEEEEEEEeCCChhh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDG--SFTT----------------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER   64 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~--~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   64 (205)
                      ..+|+++|.+++|||||+++|+..  ....                +..+.+..+.....+.+.+  ..+.++||||+.+
T Consensus        10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG~~~   87 (693)
T PRK00007         10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPGHVD   87 (693)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCCcHH
Confidence            359999999999999999999742  1100                0123333344444455544  6789999999988


Q ss_pred             hhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686           65 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  122 (205)
Q Consensus        65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~  122 (205)
                      +.......++.+|++++|+|+...-..... ..+..+..   .++|+++++||+|+.+
T Consensus        88 f~~ev~~al~~~D~~vlVvda~~g~~~qt~-~~~~~~~~---~~~p~iv~vNK~D~~~  141 (693)
T PRK00007         88 FTIEVERSLRVLDGAVAVFDAVGGVEPQSE-TVWRQADK---YKVPRIAFVNKMDRTG  141 (693)
T ss_pred             HHHHHHHHHHHcCEEEEEEECCCCcchhhH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence            776677778899999999998764322221 22233332   4689999999999864

>cd00066 G-alpha G protein alpha subunit

Probab=99.52  E-value=1.2e-12  Score=104.32  Aligned_cols=119  Identities=19%  Similarity=0.195  Sum_probs=86.6

Q ss_pred             EEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCCh----------hHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCC
Q 028686           51 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----------SSFNNIRNWIRNIEQHA-SDNVNKVLVGNKAD  119 (205)
Q Consensus        51 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~D  119 (205)
                      .+.+.+||++|+...+..|.+++.+++++|||+|+++.          ..+.+....++.+.... ..+.|+++++||.|
T Consensus       160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D  239 (317)
T cd00066         160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD  239 (317)
T ss_pred             ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence            47799999999999999999999999999999999874          34555555555554432 26799999999999


Q ss_pred             CCCC--------------CC-ccCHHHHHHHHHH----------hCCcEEEEcCCCCCCHHHHHHHHHHHHHHHh
Q 028686          120 MDES--------------KR-AVPTSKGQALADE----------YGIKFFETSAKTNLNVEQVFFSIARDIKQRL  169 (205)
Q Consensus       120 l~~~--------------~~-~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  169 (205)
                      +...              .. ....+++..+...          ..+..+.++|.+..+++.+|+.+.+.+....
T Consensus       240 ~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~  314 (317)
T cd00066         240 LFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN  314 (317)
T ss_pred             HHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence            5321              11 2234444443321          1255667889999999999999988887754

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.51  E-value=1.2e-13  Score=109.99  Aligned_cols=150  Identities=19%  Similarity=0.151  Sum_probs=97.0

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCC-------------------------------CCCCcccceeeEEEEEEEEECCEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGS-------------------------------FTTSFITTIGIDFKIRTIELDGKR   51 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~~~~   51 (205)
                      .++++++|...+|||||+-+|+..-                               ..++......++.....+..+  .
T Consensus         7 h~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~--k   84 (428)
T COG5256           7 HLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD--K   84 (428)
T ss_pred             ceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC--C
Confidence            4899999999999999999996541                               112233333333443444333  3


Q ss_pred             EEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChh---HHHHHHHHHHH--HHhhcCCCCcEEEEEeCCCCCCCCCc
Q 028686           52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SFNNIRNWIRN--IEQHASDNVNKVLVGNKADMDESKRA  126 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~--i~~~~~~~~piiiv~nK~Dl~~~~~~  126 (205)
                      +.+.|+|+||+.+|-.....-...||++|+|+|+.+.+   +|.--.+..+.  +.+..+ --.+||++||+|+.+-+ +
T Consensus        85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-i~~lIVavNKMD~v~wd-e  162 (428)
T COG5256          85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-IKQLIVAVNKMDLVSWD-E  162 (428)
T ss_pred             ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-CceEEEEEEcccccccC-H
Confidence            57999999999988877777788999999999998864   22211222222  222221 23567779999987521 1


Q ss_pred             cCHHH----HHHHHHHhC-----CcEEEEcCCCCCCHHH
Q 028686          127 VPTSK----GQALADEYG-----IKFFETSAKTNLNVEQ  156 (205)
Q Consensus       127 ~~~~~----~~~~~~~~~-----~~~~~~Sa~~~~gi~~  156 (205)
                      ...++    +..+.+..|     ++++++|+..|.|+.+
T Consensus       163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence            11222    233344443     6799999999999764

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.51  E-value=6e-13  Score=118.70  Aligned_cols=146  Identities=19%  Similarity=0.221  Sum_probs=99.0

Q ss_pred             CcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCE-----------EE-----EEEEEeCCChhhhhhhhhhhccCCc
Q 028686           14 VGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK-----------RI-----KLQIWDTAGQERFRTITTAYYRGAM   77 (205)
Q Consensus        14 ~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-----------~~-----~~~i~D~~g~~~~~~~~~~~~~~~d   77 (205)
                      ++||||+..|.+......-...++.+..-..+.++..           ..     .+.+|||||++.|..+....+..+|
T Consensus       472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD  551 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD  551 (1049)
T ss_pred             cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence            4599999999988776555555544444444444310           01     2799999999999888888888899


Q ss_pred             EEEEEEeCCC---hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccC----------------HHHHH----H
Q 028686           78 GILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP----------------TSKGQ----A  134 (205)
Q Consensus        78 ~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~----------------~~~~~----~  134 (205)
                      ++++|+|+++   +++++.+.    .+..   .++|+++++||+|+... +...                .++..    +
T Consensus       552 ivlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~-~~~~~~~~~~~~~~~q~~~~~~el~~~l~~  623 (1049)
T PRK14845        552 LAVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPG-WNISEDEPFLLNFNEQDQHALTELEIKLYE  623 (1049)
T ss_pred             EEEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccc-cccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence            9999999987   56665543    2222   35899999999998532 1100                11110    0


Q ss_pred             H----HH------------Hh--CCcEEEEcCCCCCCHHHHHHHHHHHHHH
Q 028686          135 L----AD------------EY--GIKFFETSAKTNLNVEQVFFSIARDIKQ  167 (205)
Q Consensus       135 ~----~~------------~~--~~~~~~~Sa~~~~gi~~~~~~i~~~~~~  167 (205)
                      +    ..            .+  .++++++||++|+|+++++.++......
T Consensus       624 v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~  674 (1049)
T PRK14845        624 LIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQK  674 (1049)
T ss_pred             HhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHH
Confidence            1    11            11  2689999999999999999988765543

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.49  E-value=2.8e-13  Score=118.57  Aligned_cols=126  Identities=20%  Similarity=0.112  Sum_probs=83.4

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhC---------------CCCCC---cccceeeEEEEEEEEECCEEEEEEEEeCCChhh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDG---------------SFTTS---FITTIGIDFKIRTIELDGKRIKLQIWDTAGQER   64 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~---------------~~~~~---~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   64 (205)
                      ..+|+++|..++|||||+++|+..               .+...   +..|+..........+++..+.+.+|||||+.+
T Consensus        19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~   98 (720)
T TIGR00490        19 IRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVD   98 (720)
T ss_pred             ccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccc
Confidence            358999999999999999999753               11110   112333223233334566678899999999998


Q ss_pred             hhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHH
Q 028686           65 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG  132 (205)
Q Consensus        65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~  132 (205)
                      |.......++.+|++++|+|+...-.......| ..+.   ..+.|+++++||+|....+.....+++
T Consensus        99 f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~---~~~~p~ivviNKiD~~~~~~~~~~~~~  162 (720)
T TIGR00490        99 FGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQAL---KENVKPVLFINKVDRLINELKLTPQEL  162 (720)
T ss_pred             cHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHH---HcCCCEEEEEEChhcccchhcCCHHHH
Confidence            887788889999999999999873221111112 2222   245788999999998654443333333

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>smart00275 G_alpha G protein alpha subunit

Probab=99.49  E-value=2.3e-12  Score=103.52  Aligned_cols=118  Identities=19%  Similarity=0.207  Sum_probs=84.9

Q ss_pred             EEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCCh----------hHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCC
Q 028686           52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----------SSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADM  120 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl  120 (205)
                      +.+.+||.+|+...+..|.+++.+++++|||+|+++.          ..+.+....++.+.... -.++|++|++||.|+
T Consensus       184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~  263 (342)
T smart00275      184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL  263 (342)
T ss_pred             eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence            6689999999999999999999999999999999973          34555555555554432 267999999999996


Q ss_pred             CCC--------------CCccCHHHHHHHHHH-----------hCCcEEEEcCCCCCCHHHHHHHHHHHHHHHh
Q 028686          121 DES--------------KRAVPTSKGQALADE-----------YGIKFFETSAKTNLNVEQVFFSIARDIKQRL  169 (205)
Q Consensus       121 ~~~--------------~~~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  169 (205)
                      ...              ......+.+..+...           ..+..+.++|.+-.++..+|+.+...+....
T Consensus       264 ~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~  337 (342)
T smart00275      264 FEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN  337 (342)
T ss_pred             HHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence            321              111233444333221           1245677889999999999999888887654

Subunit of G proteins that contains the guanine nucleotide binding site

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.49  E-value=8.4e-14  Score=112.97  Aligned_cols=171  Identities=18%  Similarity=0.138  Sum_probs=119.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh-----hhhh----hhhhccC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-----FRTI----TTAYYRG   75 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-----~~~~----~~~~~~~   75 (205)
                      .++++|.|++|||||++.+..........+.++...+.-.+++  +...++++||||.-+     ...+    ..++..-
T Consensus       170 TlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dy--kYlrwQViDTPGILD~plEdrN~IEmqsITALAHL  247 (620)
T KOG1490|consen  170 TLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDY--KYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHL  247 (620)
T ss_pred             eEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhh--heeeeeecCCccccCcchhhhhHHHHHHHHHHHHh
Confidence            5789999999999999999998876665554443343333333  346788899999421     1111    1222223


Q ss_pred             CcEEEEEEeCCCh--hHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHH---HHHHHHHhCCcEEEEcCCC
Q 028686           76 AMGILLVYDVTDE--SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK---GQALADEYGIKFFETSAKT  150 (205)
Q Consensus        76 ~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~---~~~~~~~~~~~~~~~Sa~~  150 (205)
                      -.+++|+.|++..  -|.+.-..+++.|...+ .+.|.|+|+||+|+...+ ++..+.   ++.+...-++++++.|..+
T Consensus       248 raaVLYfmDLSe~CGySva~QvkLfhsIKpLF-aNK~~IlvlNK~D~m~~e-dL~~~~~~ll~~~~~~~~v~v~~tS~~~  325 (620)
T KOG1490|consen  248 RSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF-ANKVTILVLNKIDAMRPE-DLDQKNQELLQTIIDDGNVKVVQTSCVQ  325 (620)
T ss_pred             hhhheeeeechhhhCCCHHHHHHHHHHhHHHh-cCCceEEEeecccccCcc-ccCHHHHHHHHHHHhccCceEEEecccc
Confidence            4477888899874  46777777999998887 578999999999986532 232222   2333444458999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhcccCCCCCCc
Q 028686          151 NLNVEQVFFSIARDIKQRLADTDSRSEPS  179 (205)
Q Consensus       151 ~~gi~~~~~~i~~~~~~~~~~~~~~~~~~  179 (205)
                      .+|+-++.....++++.++-++...++..
T Consensus       326 eegVm~Vrt~ACe~LLa~RVE~Klks~~~  354 (620)
T KOG1490|consen  326 EEGVMDVRTTACEALLAARVEQKLKSESR  354 (620)
T ss_pred             hhceeeHHHHHHHHHHHHHHHHHhhhhhh
Confidence            99999999999999988877765555433

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.49  E-value=4.4e-13  Score=101.76  Aligned_cols=164  Identities=16%  Similarity=0.217  Sum_probs=104.9

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEE-EEEEECCEEEEEEEEeCCChhh-------hhhhhhhhc
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKI-RTIELDGKRIKLQIWDTAGQER-------FRTITTAYY   73 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~   73 (205)
                      ..++|+++|..|+|||||+|+|+.+...+...-..+.+... ....+++  -.+.+||+||-++       ++.....++
T Consensus        38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d~l  115 (296)
T COG3596          38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRDYL  115 (296)
T ss_pred             CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHHHh
Confidence            46899999999999999999999765433221111111111 1112333  3589999999543       777788888


Q ss_pred             cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC-------CccCHHH-------H---HHHH
Q 028686           74 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK-------RAVPTSK-------G---QALA  136 (205)
Q Consensus        74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-------~~~~~~~-------~---~~~~  136 (205)
                      ...|.++++.+..++.=-.+. .+++.+.... .+.++++++|.+|.....       .......       +   .+++
T Consensus       116 ~~~DLvL~l~~~~draL~~d~-~f~~dVi~~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~  193 (296)
T COG3596         116 PKLDLVLWLIKADDRALGTDE-DFLRDVIILG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLF  193 (296)
T ss_pred             hhccEEEEeccCCCccccCCH-HHHHHHHHhc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999886422222 2334443332 348999999999964321       1111111       1   1112


Q ss_pred             HHhCCcEEEEcCCCCCCHHHHHHHHHHHHHHHhc
Q 028686          137 DEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA  170 (205)
Q Consensus       137 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~  170 (205)
                      ++ --|++.++...+.|++++...+++.+....+
T Consensus       194 q~-V~pV~~~~~r~~wgl~~l~~ali~~lp~e~r  226 (296)
T COG3596         194 QE-VKPVVAVSGRLPWGLKELVRALITALPVEAR  226 (296)
T ss_pred             hh-cCCeEEeccccCccHHHHHHHHHHhCccccc
Confidence            22 1477888889999999999999988864433

>PRK09866 hypothetical protein; Provisional

Probab=99.48  E-value=3.3e-12  Score=107.62  Aligned_cols=108  Identities=19%  Similarity=0.190  Sum_probs=71.9

Q ss_pred             EEEEEeCCChhh-----hhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCcc
Q 028686           53 KLQIWDTAGQER-----FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAV  127 (205)
Q Consensus        53 ~~~i~D~~g~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~  127 (205)
                      .+.++||||-..     ........+..+|+++||+|....-+..+ ....+.+.... ...|+++|+||+|+.+. ...
T Consensus       231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~-K~~PVILVVNKIDl~dr-eed  307 (741)
T PRK09866        231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG-QSVPLYVLVNKFDQQDR-NSD  307 (741)
T ss_pred             CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC-CCCCEEEEEEcccCCCc-ccc
Confidence            467889999643     22234457889999999999987433332 12334444322 23699999999998532 222


Q ss_pred             CHHHHHHHHHH----hC---CcEEEEcCCCCCCHHHHHHHHHH
Q 028686          128 PTSKGQALADE----YG---IKFFETSAKTNLNVEQVFFSIAR  163 (205)
Q Consensus       128 ~~~~~~~~~~~----~~---~~~~~~Sa~~~~gi~~~~~~i~~  163 (205)
                      ..+.+..+...    .+   ..+|++||+.|.|++++++.|..
T Consensus       308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            34555554321    12   36899999999999999999876

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.45  E-value=2.4e-12  Score=99.66  Aligned_cols=162  Identities=13%  Similarity=0.230  Sum_probs=116.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECC--EEEEEEEEeCCChhhhhhhhhhhccC----Cc
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG--KRIKLQIWDTAGQERFRTITTAYYRG----AM   77 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~----~d   77 (205)
                      -+|+|+|+.++|||||+.+|-+.+   .+.+.-+..|.+..+.-..  .-.++.+|-..|.--+..+....+..    -.
T Consensus        53 k~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aet  129 (473)
T KOG3905|consen   53 KNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAET  129 (473)
T ss_pred             CeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccce
Confidence            368999999999999999998765   4455556566655543322  22467889888877666666555443    23


Q ss_pred             EEEEEEeCCCh-hHHHHHHHHHHHHHhhcC--------------------------------------------------
Q 028686           78 GILLVYDVTDE-SSFNNIRNWIRNIEQHAS--------------------------------------------------  106 (205)
Q Consensus        78 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--------------------------------------------------  106 (205)
                      .+|++.|++++ --++.+..|...+..+..                                                  
T Consensus       130 lviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~l  209 (473)
T KOG3905|consen  130 LVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVL  209 (473)
T ss_pred             EEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccc
Confidence            67889999998 445556666655533311                                                  


Q ss_pred             -----------CCCcEEEEEeCCCCCC----------CCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHHHH
Q 028686          107 -----------DNVNKVLVGNKADMDE----------SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI  165 (205)
Q Consensus       107 -----------~~~piiiv~nK~Dl~~----------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~  165 (205)
                                 .++|++||.+|+|...          +..+....++++||..+|..+|.+|++...|++-+..+|.+++
T Consensus       210 lPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~  289 (473)
T KOG3905|consen  210 LPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRS  289 (473)
T ss_pred             cccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHh
Confidence                       1789999999999721          1223445567888999999999999999999999999999987


Q ss_pred             HHH
Q 028686          166 KQR  168 (205)
Q Consensus       166 ~~~  168 (205)
                      ...
T Consensus       290 yG~  292 (473)
T KOG3905|consen  290 YGF  292 (473)
T ss_pred             cCc
Confidence            654

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.45  E-value=4.5e-13  Score=103.02  Aligned_cols=96  Identities=18%  Similarity=0.254  Sum_probs=77.5

Q ss_pred             hhhhhhhhhhccCCcEEEEEEeCCChh-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC
Q 028686           63 ERFRTITTAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI  141 (205)
Q Consensus        63 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  141 (205)
                      +++..+.+.+++++|++++|||+++++ ++..+..|+..+..   .++|+++|+||+||.+ ...+..+.+..+ ...++
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~-~~~~~~~~~~~~-~~~g~   98 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLD-DEDMEKEQLDIY-RNIGY   98 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCC-CHHHHHHHHHHH-HHCCC
Confidence            557788888999999999999999887 89999999987654   4699999999999964 233333444444 35788


Q ss_pred             cEEEEcCCCCCCHHHHHHHHHH
Q 028686          142 KFFETSAKTNLNVEQVFFSIAR  163 (205)
Q Consensus       142 ~~~~~Sa~~~~gi~~~~~~i~~  163 (205)
                      +++++||++|.|++++|+.+..
T Consensus        99 ~v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        99 QVLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             eEEEEecCCchhHHHHHhhhcC
Confidence            9999999999999999998753

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.44  E-value=9.9e-13  Score=88.07  Aligned_cols=136  Identities=24%  Similarity=0.177  Sum_probs=94.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhh----hhhccCCcEEE
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT----TAYYRGAMGIL   80 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~----~~~~~~~d~~i   80 (205)
                      |++++|..|+|||||.+.|-+...  -+..|...+|.       .+    -.+||||..--...|    .....++|+++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQAve~~-------d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~   69 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQAVEFN-------DK----GDIDTPGEYFEHPRWYHALITTLQDADVII   69 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchh--hhcccceeecc-------Cc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence            679999999999999999988652  33333332222       11    245999976322222    33346899999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC-cEEEEcCCCCCCHHHHHH
Q 028686           81 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVEQVFF  159 (205)
Q Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~  159 (205)
                      +|-++++++|---     ..+....  ..|+|-|++|.||++   ....+..+.|..+-|. ++|++|+.++.|+++++.
T Consensus        70 ~v~~and~~s~f~-----p~f~~~~--~k~vIgvVTK~DLae---d~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~  139 (148)
T COG4917          70 YVHAANDPESRFP-----PGFLDIG--VKKVIGVVTKADLAE---DADISLVKRWLREAGAEPIFETSAVDNQGVEELVD  139 (148)
T ss_pred             eeecccCccccCC-----ccccccc--ccceEEEEecccccc---hHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHH
Confidence            9999999865211     2222222  256888999999964   2345667778888885 799999999999999999


Q ss_pred             HHHH
Q 028686          160 SIAR  163 (205)
Q Consensus       160 ~i~~  163 (205)
                      .+..
T Consensus       140 ~L~~  143 (148)
T COG4917         140 YLAS  143 (148)
T ss_pred             HHHh
Confidence            8764

>TIGR00101 ureG urease accessory protein UreG

Probab=99.43  E-value=4.8e-12  Score=94.35  Aligned_cols=100  Identities=18%  Similarity=0.104  Sum_probs=62.9

Q ss_pred             EEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcE--EEEEeCCCCCCCCCccCHH
Q 028686           53 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK--VLVGNKADMDESKRAVPTS  130 (205)
Q Consensus        53 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi--iiv~nK~Dl~~~~~~~~~~  130 (205)
                      ...++++.|..-.....+.   -++.+|.|+|+.+.++...  .+..        ++..  ++++||+|+.+. .....+
T Consensus        93 D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~--~~~~--------qi~~ad~~~~~k~d~~~~-~~~~~~  158 (199)
T TIGR00101        93 EMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPR--KGGP--------GITRSDLLVINKIDLAPM-VGADLG  158 (199)
T ss_pred             CEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhh--hhHh--------HhhhccEEEEEhhhcccc-ccccHH
Confidence            4556777774322222221   1677999999988665321  1112        2333  899999999642 122233


Q ss_pred             HHHHHHHH--hCCcEEEEcCCCCCCHHHHHHHHHHHHH
Q 028686          131 KGQALADE--YGIKFFETSAKTNLNVEQVFFSIARDIK  166 (205)
Q Consensus       131 ~~~~~~~~--~~~~~~~~Sa~~~~gi~~~~~~i~~~~~  166 (205)
                      ...+..+.  .+.+++++||++|.|++++|+++.+.++
T Consensus       159 ~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       159 VMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             HHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            34444443  3489999999999999999999987653

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PRK13768 GTPase; Provisional

Probab=99.43  E-value=1.2e-12  Score=101.09  Aligned_cols=110  Identities=17%  Similarity=0.175  Sum_probs=70.2

Q ss_pred             EEEEEeCCChhhh---hhhhhhhccC-----CcEEEEEEeCCChhHHHHHHH--HHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686           53 KLQIWDTAGQERF---RTITTAYYRG-----AMGILLVYDVTDESSFNNIRN--WIRNIEQHASDNVNKVLVGNKADMDE  122 (205)
Q Consensus        53 ~~~i~D~~g~~~~---~~~~~~~~~~-----~d~~i~v~d~~~~~s~~~~~~--~~~~i~~~~~~~~piiiv~nK~Dl~~  122 (205)
                      .+.+||+||+.+.   +..+..+++.     ++++++|+|........+...  |+....... .+.|+++|+||+|+.+
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~-~~~~~i~v~nK~D~~~  176 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR-LGLPQIPVLNKADLLS  176 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH-cCCCEEEEEEhHhhcC
Confidence            5899999998653   3444333332     889999999965433322221  222222122 4699999999999865


Q ss_pred             CCCccCHHHHHH----------------------------HHHHhC--CcEEEEcCCCCCCHHHHHHHHHHHHH
Q 028686          123 SKRAVPTSKGQA----------------------------LADEYG--IKFFETSAKTNLNVEQVFFSIARDIK  166 (205)
Q Consensus       123 ~~~~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~gi~~~~~~i~~~~~  166 (205)
                      ....   ++..+                            .....+  .+++++|++++.|+++++++|.+.+.
T Consensus       177 ~~~~---~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~  247 (253)
T PRK13768        177 EEEL---ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC  247 (253)
T ss_pred             chhH---HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence            3211   11111                            122334  58899999999999999999987663

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.42  E-value=5.9e-12  Score=104.33  Aligned_cols=161  Identities=15%  Similarity=0.270  Sum_probs=113.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEEC--CEEEEEEEEeCCChhhhhhhhhhhccC----CcE
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD--GKRIKLQIWDTAGQERFRTITTAYYRG----AMG   78 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~----~d~   78 (205)
                      .|+|+|..++|||||+.+|.+.+   .+.++.+.+|.+..+.-+  .....+.+|-+.|...+..+....+..    --+
T Consensus        27 ~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~  103 (472)
T PF05783_consen   27 SVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNTL  103 (472)
T ss_pred             eEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccceE
Confidence            68999999999999999987643   345667777765544322  123468999998876677776655542    347


Q ss_pred             EEEEEeCCChhH-HHHHHHHHHHHHhhc----------------------------------------------------
Q 028686           79 ILLVYDVTDESS-FNNIRNWIRNIEQHA----------------------------------------------------  105 (205)
Q Consensus        79 ~i~v~d~~~~~s-~~~~~~~~~~i~~~~----------------------------------------------------  105 (205)
                      +++|.|.+.|-. ++.+..|+..+..+.                                                    
T Consensus       104 vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~~  183 (472)
T PF05783_consen  104 VVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESVL  183 (472)
T ss_pred             EEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccccc
Confidence            889999998754 344554544432110                                                    


Q ss_pred             ----------CCCCcEEEEEeCCCCCC----C------CCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHHHH
Q 028686          106 ----------SDNVNKVLVGNKADMDE----S------KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI  165 (205)
Q Consensus       106 ----------~~~~piiiv~nK~Dl~~----~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~  165 (205)
                                +.++|++||.+|+|...    .      ..++..+.++.++..+|+.+|.+|++...+++-++.+|.+.+
T Consensus       184 lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l  263 (472)
T PF05783_consen  184 LPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRL  263 (472)
T ss_pred             CCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHh
Confidence                      01589999999999532    1      112344557888889999999999999999999999988887


Q ss_pred             HHH
Q 028686          166 KQR  168 (205)
Q Consensus       166 ~~~  168 (205)
                      ...
T Consensus       264 ~~~  266 (472)
T PF05783_consen  264 YGF  266 (472)
T ss_pred             ccC
Confidence            654

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.40  E-value=5.5e-12  Score=98.69  Aligned_cols=149  Identities=23%  Similarity=0.147  Sum_probs=101.3

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCC---------------------------------CCCcccceeeEEEEEEEEEC
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSF---------------------------------TTSFITTIGIDFKIRTIELD   48 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~---------------------------------~~~~~~t~~~~~~~~~~~~~   48 (205)
                      ..+|++-+|.-.=||||||-||+....                                 ..+....+.+|..+..+..+
T Consensus         5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~   84 (431)
T COG2895           5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE   84 (431)
T ss_pred             cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence            458999999999999999999976421                                 11233444455555555444


Q ss_pred             CEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccC
Q 028686           49 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP  128 (205)
Q Consensus        49 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~  128 (205)
                      .  -+|.+-||||+++|..+.-.-...||++|+++|+..  ...+-..-...|....+ -..+++..||+||.+.+.+..
T Consensus        85 K--RkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~--Gvl~QTrRHs~I~sLLG-IrhvvvAVNKmDLvdy~e~~F  159 (431)
T COG2895          85 K--RKFIIADTPGHEQYTRNMATGASTADLAILLVDARK--GVLEQTRRHSFIASLLG-IRHVVVAVNKMDLVDYSEEVF  159 (431)
T ss_pred             c--ceEEEecCCcHHHHhhhhhcccccccEEEEEEecch--hhHHHhHHHHHHHHHhC-CcEEEEEEeeecccccCHHHH
Confidence            4  458999999999999877777778999999999843  22222222223333321 246677799999987544332


Q ss_pred             ---HHHHHHHHHHhC---CcEEEEcCCCCCCHH
Q 028686          129 ---TSKGQALADEYG---IKFFETSAKTNLNVE  155 (205)
Q Consensus       129 ---~~~~~~~~~~~~---~~~~~~Sa~~~~gi~  155 (205)
                         ..+-..|+.+++   ..++++||..|+|+-
T Consensus       160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             HHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence               223345677777   569999999999976

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.40  E-value=1.5e-11  Score=96.32  Aligned_cols=118  Identities=20%  Similarity=0.179  Sum_probs=69.6

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCC-CcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhh-------hhhhc
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-------TTAYY   73 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~~~   73 (205)
                      ..++|+++|.+|+||||++|+|++..... ....+.+..........++  ..+.+|||||..+....       ...++
T Consensus        37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~~l  114 (313)
T TIGR00991        37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKRFL  114 (313)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence            35799999999999999999999876421 1112222222222233444  57899999996542211       11112


Q ss_pred             --cCCcEEEEEEeCCChhHHH-HHHHHHHHHHhhcCC--CCcEEEEEeCCCCCC
Q 028686           74 --RGAMGILLVYDVTDESSFN-NIRNWIRNIEQHASD--NVNKVLVGNKADMDE  122 (205)
Q Consensus        74 --~~~d~~i~v~d~~~~~s~~-~~~~~~~~i~~~~~~--~~piiiv~nK~Dl~~  122 (205)
                        ...|+++||..++... +. .-...++.+...++.  -.++||++++.|..+
T Consensus       115 ~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~  167 (313)
T TIGR00991       115 LGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP  167 (313)
T ss_pred             hcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence              2589999996654321 11 112334444444321  247899999999753

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.39  E-value=2.6e-11  Score=93.31  Aligned_cols=117  Identities=19%  Similarity=0.200  Sum_probs=69.4

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCC-cccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh--h-h-------hhh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTS-FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR--T-I-------TTA   71 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~-~-------~~~   71 (205)
                      .++|+|+|.+|+|||||+|+|++...... ..+..+..........++  ..+.+|||||.....  . .       ...
T Consensus        31 ~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~  108 (249)
T cd01853          31 SLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSSIKR  108 (249)
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHHHHH
Confidence            58999999999999999999999764221 111112222222334445  568999999965331  0 0       122


Q ss_pred             hcc--CCcEEEEEEeCCCh-hHHHHHHHHHHHHHhhcCCC--CcEEEEEeCCCCCC
Q 028686           72 YYR--GAMGILLVYDVTDE-SSFNNIRNWIRNIEQHASDN--VNKVLVGNKADMDE  122 (205)
Q Consensus        72 ~~~--~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~--~piiiv~nK~Dl~~  122 (205)
                      ++.  ..+++++|..++.. ....+ ...++.+....+.+  .++++|.||+|...
T Consensus       109 ~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~~  163 (249)
T cd01853         109 YLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASSP  163 (249)
T ss_pred             HHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence            332  57788888766542 12221 23344444333222  47899999999754

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PTZ00258 GTP-binding protein; Provisional

Probab=99.37  E-value=1.7e-11  Score=99.35  Aligned_cols=84  Identities=19%  Similarity=0.113  Sum_probs=55.6

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCE---------------EEEEEEEeCCChhhh--
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK---------------RIKLQIWDTAGQERF--   65 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~--   65 (205)
                      .++|+++|.||||||||+|+|.+........|..+.+.....+.+...               ...+.++|+||...-  
T Consensus        21 ~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~  100 (390)
T PTZ00258         21 NLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGAS  100 (390)
T ss_pred             CcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCc
Confidence            478999999999999999999887754443344433333333333221               235899999995421  


Q ss_pred             --hhhh---hhhccCCcEEEEEEeCC
Q 028686           66 --RTIT---TAYYRGAMGILLVYDVT   86 (205)
Q Consensus        66 --~~~~---~~~~~~~d~~i~v~d~~   86 (205)
                        ..+.   -..++.+|++++|+|..
T Consensus       101 ~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258        101 EGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             chhHHHHHHHHHHHHCCEEEEEEeCC
Confidence              1222   23467899999999973

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.37  E-value=2.5e-11  Score=100.41  Aligned_cols=158  Identities=19%  Similarity=0.251  Sum_probs=117.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      +...++|+.++|||.+++.|+++.+...+..+....+....+.+.+....+.+-|.+-. ...-+.+.- ..+|+++++|
T Consensus       426 f~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~~Y  503 (625)
T KOG1707|consen  426 FQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVACLVY  503 (625)
T ss_pred             eeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEEEec
Confidence            67899999999999999999999988777676666666666666676666777777744 222222222 5699999999


Q ss_pred             eCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC-cEEEEcCCCCCCHHHHHHHHH
Q 028686           84 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        84 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      |.+++.+|+.....++.-...  .++|+++|+.|.|+.+...+...+. .+++.++++ +.+.+|.+..-. .++|..|.
T Consensus       504 DsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqp-de~~~~~~i~~P~~~S~~~~~s-~~lf~kL~  579 (625)
T KOG1707|consen  504 DSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQP-DEFCRQLGLPPPIHISSKTLSS-NELFIKLA  579 (625)
T ss_pred             ccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCCh-HHHHHhcCCCCCeeeccCCCCC-chHHHHHH
Confidence            999999999887655554433  5699999999999976544444444 888999986 345667765334 89999998


Q ss_pred             HHHHH
Q 028686          163 RDIKQ  167 (205)
Q Consensus       163 ~~~~~  167 (205)
                      .++..
T Consensus       580 ~~A~~  584 (625)
T KOG1707|consen  580 TMAQY  584 (625)
T ss_pred             HhhhC
Confidence            88754

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.36  E-value=6.2e-12  Score=95.37  Aligned_cols=118  Identities=17%  Similarity=0.177  Sum_probs=68.3

Q ss_pred             EEEEEEeCCChhh-hh-----hhhhhhcc--CCcEEEEEEeCCC---hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028686           52 IKLQIWDTAGQER-FR-----TITTAYYR--GAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM  120 (205)
Q Consensus        52 ~~~~i~D~~g~~~-~~-----~~~~~~~~--~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl  120 (205)
                      +.+.++||||+-. |.     .+....+.  ...++++|+|...   +.+|-.-..+.  +......++|+|++.||.|+
T Consensus       116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYA--cSilyktklp~ivvfNK~Dv  193 (366)
T KOG1532|consen  116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYA--CSILYKTKLPFIVVFNKTDV  193 (366)
T ss_pred             cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHH--HHHHHhccCCeEEEEecccc
Confidence            5688999999743 21     11111111  2446777887654   33332211111  22223356999999999998


Q ss_pred             CCCCCcc----CHHHHHHHHH---------------------HhCCcEEEEcCCCCCCHHHHHHHHHHHHHHHhcc
Q 028686          121 DESKRAV----PTSKGQALAD---------------------EYGIKFFETSAKTNLNVEQVFFSIARDIKQRLAD  171 (205)
Q Consensus       121 ~~~~~~~----~~~~~~~~~~---------------------~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~~  171 (205)
                      .+.....    +.+..++..+                     ..++..+-+||.+|.|++++|..+.+.+.+...+
T Consensus       194 ~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~~  269 (366)
T KOG1532|consen  194 SDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEEE  269 (366)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHHH
Confidence            6532110    0111111111                     0146788999999999999999998888766443

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.35  E-value=1.1e-11  Score=108.82  Aligned_cols=118  Identities=21%  Similarity=0.167  Sum_probs=76.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCC--CCCC--------------cccceeeEEEEE--EEEECCEEEEEEEEeCCChhhh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGS--FTTS--------------FITTIGIDFKIR--TIELDGKRIKLQIWDTAGQERF   65 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~--~~~~--------------~~~t~~~~~~~~--~~~~~~~~~~~~i~D~~g~~~~   65 (205)
                      .+|+++|..++|||||+.+|+...  ....              ....+.+.....  ...+++....+.++||||+.+|
T Consensus        21 Rni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~df  100 (731)
T PRK07560         21 RNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDF  100 (731)
T ss_pred             cEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccCh
Confidence            479999999999999999997632  1110              000011111111  1223445678899999999988


Q ss_pred             hhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC
Q 028686           66 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR  125 (205)
Q Consensus        66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~  125 (205)
                      .......++.+|++++|+|+...-... ....+..+..   .+.|+++++||+|....+.
T Consensus       101 ~~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~---~~~~~iv~iNK~D~~~~~~  156 (731)
T PRK07560        101 GGDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALR---ERVKPVLFINKVDRLIKEL  156 (731)
T ss_pred             HHHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHH---cCCCeEEEEECchhhcccc
Confidence            877888889999999999988742222 2222222222   3478899999999864433

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.35  E-value=4e-11  Score=96.21  Aligned_cols=84  Identities=15%  Similarity=0.083  Sum_probs=54.3

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCE---------------EEEEEEEeCCChhh---
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK---------------RIKLQIWDTAGQER---   64 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~---   64 (205)
                      .++|+++|.||||||||+|+|.+........|.++.+...-.+.+...               ...+.+.|+||...   
T Consensus         2 ~~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~   81 (364)
T PRK09601          2 GLKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS   81 (364)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence            378999999999999999999998743333333332222222232221               13589999999542   


Q ss_pred             -hhhhhhh---hccCCcEEEEEEeCC
Q 028686           65 -FRTITTA---YYRGAMGILLVYDVT   86 (205)
Q Consensus        65 -~~~~~~~---~~~~~d~~i~v~d~~   86 (205)
                       -..+...   .++.+|++++|+|..
T Consensus        82 ~g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         82 KGEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             hHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence             1122222   357899999999973

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.35  E-value=1.1e-12  Score=100.18  Aligned_cols=112  Identities=18%  Similarity=0.264  Sum_probs=59.4

Q ss_pred             EEEEEeCCChhhhhhhhhhhc--------cCCcEEEEEEeCCC---hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028686           53 KLQIWDTAGQERFRTITTAYY--------RGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD  121 (205)
Q Consensus        53 ~~~i~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~  121 (205)
                      .+.++|||||.++-..+....        ...-++++++|...   +..|-.  .++-.+......+.|.+.|+||+|+.
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s--~~L~s~s~~~~~~lP~vnvlsK~Dl~  169 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVS--SLLLSLSIMLRLELPHVNVLSKIDLL  169 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHH--HHHHHHHHHHHHTSEEEEEE--GGGS
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHH--HHHHHHHHHhhCCCCEEEeeeccCcc
Confidence            689999999987554443332        34557888888764   333432  22333322222469999999999996


Q ss_pred             CCCCcc------------------CHHHHHHHHH---HhC-C-cEEEEcCCCCCCHHHHHHHHHHHHH
Q 028686          122 ESKRAV------------------PTSKGQALAD---EYG-I-KFFETSAKTNLNVEQVFFSIARDIK  166 (205)
Q Consensus       122 ~~~~~~------------------~~~~~~~~~~---~~~-~-~~~~~Sa~~~~gi~~~~~~i~~~~~  166 (205)
                      ......                  ......+++.   .++ + .++.+|+.+++|+++++..+.+++.
T Consensus       170 ~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~~  237 (238)
T PF03029_consen  170 SKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKANQ  237 (238)
T ss_dssp             -HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHhc
Confidence            521000                  0001111222   223 4 7999999999999999999887653

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.34  E-value=2.1e-11  Score=98.53  Aligned_cols=160  Identities=17%  Similarity=0.187  Sum_probs=109.0

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCC--CCC--------------CcccceeeEEEEEEEEECCEEEEEEEEeCCChhhh
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGS--FTT--------------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF   65 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~--~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   65 (205)
                      ..-+|+++-.-..|||||+..|+...  |.+              +...  |++...+.-.+..+.+.+.|.||||+.+|
T Consensus         4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkER--GITILaKnTav~~~~~~INIvDTPGHADF   81 (603)
T COG1217           4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKER--GITILAKNTAVNYNGTRINIVDTPGHADF   81 (603)
T ss_pred             ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhc--CcEEEeccceeecCCeEEEEecCCCcCCc
Confidence            34689999999999999999998753  211              1112  22333333333334478999999999999


Q ss_pred             hhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHH-------
Q 028686           66 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADE-------  138 (205)
Q Consensus        66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~-------  138 (205)
                      -...++.++-.|++++++|+.+.. +.+.+-.+   .+....+.+.|+|+||+|-+++.......+...+...       
T Consensus        82 GGEVERvl~MVDgvlLlVDA~EGp-MPQTrFVl---kKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQ  157 (603)
T COG1217          82 GGEVERVLSMVDGVLLLVDASEGP-MPQTRFVL---KKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQ  157 (603)
T ss_pred             cchhhhhhhhcceEEEEEEcccCC-CCchhhhH---HHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhh
Confidence            999999999999999999998731 12222111   2233357888999999998776555555555555443       


Q ss_pred             hCCcEEEEcCCCCC----------CHHHHHHHHHHHHHH
Q 028686          139 YGIKFFETSAKTNL----------NVEQVFFSIARDIKQ  167 (205)
Q Consensus       139 ~~~~~~~~Sa~~~~----------gi~~~~~~i~~~~~~  167 (205)
                      ++.|++..|+++|.          ++.-+|+.|++.+..
T Consensus       158 LdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~  196 (603)
T COG1217         158 LDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA  196 (603)
T ss_pred             CCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence            34788889988763          356677776666543

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.33  E-value=1e-10  Score=88.20  Aligned_cols=162  Identities=19%  Similarity=0.198  Sum_probs=92.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcc--cceeeEEEEEEEEECCEEEEEEEEeCCChhhh--------hhhh---h
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFI--TTIGIDFKIRTIELDGKRIKLQIWDTAGQERF--------RTIT---T   70 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~~~---~   70 (205)
                      ++|+|+|..|+||||++|.+++........  .............+++  ..+.++||||..+.        ..+.   .
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            589999999999999999999987533221  1122223344446777  45789999994321        1111   1


Q ss_pred             hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCC--CcEEEEEeCCCCCCCCCc---c---CHHHHHHHHHHhCCc
Q 028686           71 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN--VNKVLVGNKADMDESKRA---V---PTSKGQALADEYGIK  142 (205)
Q Consensus        71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~nK~Dl~~~~~~---~---~~~~~~~~~~~~~~~  142 (205)
                      ......+++++|+.+... +-.+ ...++.+....+++  ..++||.+..|......-   +   .....+.+.+..+-.
T Consensus        79 ~~~~g~ha~llVi~~~r~-t~~~-~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R  156 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLGRF-TEED-REVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR  156 (212)
T ss_dssp             HTTT-ESEEEEEEETTB--SHHH-HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hccCCCeEEEEEEecCcc-hHHH-HHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence            123468999999998832 2111 12223333333211  367888888875442220   0   012345566677778


Q ss_pred             EEEEcCC------CCCCHHHHHHHHHHHHHHHh
Q 028686          143 FFETSAK------TNLNVEQVFFSIARDIKQRL  169 (205)
Q Consensus       143 ~~~~Sa~------~~~gi~~~~~~i~~~~~~~~  169 (205)
                      |+.++..      ....+.+|++.+-+.+.++.
T Consensus       157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~  189 (212)
T PF04548_consen  157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENG  189 (212)
T ss_dssp             EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence            8877776      23457788888877777664

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.32  E-value=2.7e-11  Score=107.81  Aligned_cols=116  Identities=21%  Similarity=0.145  Sum_probs=77.4

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCC--CC--------------CcccceeeEEEEEEEEE--------------CCEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSF--TT--------------SFITTIGIDFKIRTIEL--------------DGKRI   52 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~--~~--------------~~~~t~~~~~~~~~~~~--------------~~~~~   52 (205)
                      ..+|+|+|..++|||||+++|+...-  ..              +......+......+.+              ....+
T Consensus        19 Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (843)
T PLN00116         19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEY   98 (843)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCce
Confidence            46899999999999999999976431  00              00111111111111222              12357


Q ss_pred             EEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686           53 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  122 (205)
Q Consensus        53 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~  122 (205)
                      .+.++||||+.+|.......++.+|++|+|+|+...-.......| ..+.   ..++|+++++||+|...
T Consensus        99 ~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~-~~~~---~~~~p~i~~iNK~D~~~  164 (843)
T PLN00116         99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRCF  164 (843)
T ss_pred             EEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHH-HHHH---HCCCCEEEEEECCcccc
Confidence            789999999999988888888999999999999875332222222 2222   25689999999999863

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.30  E-value=2.3e-10  Score=90.79  Aligned_cols=135  Identities=19%  Similarity=0.254  Sum_probs=91.4

Q ss_pred             ccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHH-------HHHHH---HHHHHH
Q 028686           33 ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF-------NNIRN---WIRNIE  102 (205)
Q Consensus        33 ~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-------~~~~~---~~~~i~  102 (205)
                      .+|.|  .....+.+++  ..+.+.|.+||..-+.-|.+.+.+++++|||+++++.+..       ..+..   +++.|-
T Consensus       180 ~~T~G--I~e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~  255 (354)
T KOG0082|consen  180 VPTTG--IVEVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESIC  255 (354)
T ss_pred             cCcCC--eeEEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHh
Confidence            34444  3333444444  7789999999998888899999999999999999874322       22322   444443


Q ss_pred             hhc-CCCCcEEEEEeCCCCCCC--------------CCccCHHHHHHHHHHh----------CCcEEEEcCCCCCCHHHH
Q 028686          103 QHA-SDNVNKVLVGNKADMDES--------------KRAVPTSKGQALADEY----------GIKFFETSAKTNLNVEQV  157 (205)
Q Consensus       103 ~~~-~~~~piiiv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~----------~~~~~~~Sa~~~~gi~~~  157 (205)
                      .+. -.+.++|+++||.||-.+              ...-..+++..+....          .+.++.+.|.+-.+|+.+
T Consensus       256 n~~~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~v  335 (354)
T KOG0082|consen  256 NNKWFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFV  335 (354)
T ss_pred             cCcccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHH
Confidence            332 267999999999997321              1223445554443211          255667789999999999


Q ss_pred             HHHHHHHHHHHhcc
Q 028686          158 FFSIARDIKQRLAD  171 (205)
Q Consensus       158 ~~~i~~~~~~~~~~  171 (205)
                      |..+.+.+...+-.
T Consensus       336 f~av~d~Ii~~nlk  349 (354)
T KOG0082|consen  336 FDAVTDTIIQNNLK  349 (354)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998876644

>PTZ00416 elongation factor 2; Provisional

Probab=99.30  E-value=4.1e-11  Score=106.48  Aligned_cols=115  Identities=20%  Similarity=0.180  Sum_probs=76.6

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCC--CCC--------------CcccceeeEEEEEEEEEC--------CEEEEEEEEe
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGS--FTT--------------SFITTIGIDFKIRTIELD--------GKRIKLQIWD   58 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~--~~~--------------~~~~t~~~~~~~~~~~~~--------~~~~~~~i~D   58 (205)
                      ..+|+++|..++|||||+++|+...  ...              +....+.+......+.+.        ++...+.++|
T Consensus        19 irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liD   98 (836)
T PTZ00416         19 IRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLID   98 (836)
T ss_pred             cCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEc
Confidence            3589999999999999999998632  110              011111111111222222        2256789999


Q ss_pred             CCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028686           59 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD  121 (205)
Q Consensus        59 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~  121 (205)
                      |||+.+|.......++.+|++|+|+|+.+.-... ....+..+..   .++|+++++||+|+.
T Consensus        99 tPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~~---~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         99 SPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ-TETVLRQALQ---ERIRPVLFINKVDRA  157 (836)
T ss_pred             CCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHHH---cCCCEEEEEEChhhh
Confidence            9999998877888889999999999998742222 1222333332   458999999999986

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.29  E-value=7.7e-12  Score=92.56  Aligned_cols=147  Identities=18%  Similarity=0.262  Sum_probs=95.5

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhh-----hhhhhhhccCC
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-----RTITTAYYRGA   76 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~~~~   76 (205)
                      .-||+++|.+|+|||++--.+..+-.. ....++..+|+....+.+-| +..+.+||++|++.+     .......+++.
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV   82 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRNV   82 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence            458999999999999986555533211 22334444566666665544 466899999999843     23456778999


Q ss_pred             cEEEEEEeCCChhHHHHHHHHHH---HHHhhcCCCCcEEEEEeCCCCCCCCCc-cC----HHHHHHHHHHhCCcEEEEcC
Q 028686           77 MGILLVYDVTDESSFNNIRNWIR---NIEQHASDNVNKVLVGNKADMDESKRA-VP----TSKGQALADEYGIKFFETSA  148 (205)
Q Consensus        77 d~~i~v~d~~~~~s~~~~~~~~~---~i~~~~~~~~piiiv~nK~Dl~~~~~~-~~----~~~~~~~~~~~~~~~~~~Sa  148 (205)
                      +++|+|||+...+-..++..+..   .+.++. +...+.+...|.||...+.. ..    .+....+....++.++.+|.
T Consensus        83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~S-P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi  161 (295)
T KOG3886|consen   83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNS-PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI  161 (295)
T ss_pred             eeeeeeeeccchhhhhhHHHHHHHHHHHHhcC-CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence            99999999998765555555444   333333 67888999999999753221 11    12223333344567777776


Q ss_pred             CCC
Q 028686          149 KTN  151 (205)
Q Consensus       149 ~~~  151 (205)
                      .+.
T Consensus       162 wDe  164 (295)
T KOG3886|consen  162 WDE  164 (295)
T ss_pred             hhH
Confidence            654

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.28  E-value=5.6e-11  Score=100.64  Aligned_cols=160  Identities=15%  Similarity=0.159  Sum_probs=106.8

Q ss_pred             EEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEEC------------CE----EEEEEEEeCCChhhhhhhh
Q 028686            6 RIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD------------GK----RIKLQIWDTAGQERFRTIT   69 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~------------~~----~~~~~i~D~~g~~~~~~~~   69 (205)
                      +||+|...+|||-|+..+.+..+......++........+...            ++    .=-+.++||||++.|..+.
T Consensus       478 cCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnlR  557 (1064)
T KOG1144|consen  478 CCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNLR  557 (1064)
T ss_pred             EEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhhh
Confidence            7999999999999999998876554433333322222222211            10    0127889999999999999


Q ss_pred             hhhccCCcEEEEEEeCCC---hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC-----CCcc-----------CHH
Q 028686           70 TAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES-----KRAV-----------PTS  130 (205)
Q Consensus        70 ~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~-----~~~~-----------~~~  130 (205)
                      .+....||.+|+|+|+..   +++++.+    +.++   ..+.|+||.+||+|-...     ...+           ..+
T Consensus       558 srgsslC~~aIlvvdImhGlepqtiESi----~lLR---~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~E  630 (1064)
T KOG1144|consen  558 SRGSSLCDLAILVVDIMHGLEPQTIESI----NLLR---MRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNE  630 (1064)
T ss_pred             hccccccceEEEEeehhccCCcchhHHH----HHHH---hcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHH
Confidence            999999999999999865   4444443    3333   356999999999995321     0000           000


Q ss_pred             H-------HHHHHHH-h-----------C--CcEEEEcCCCCCCHHHHHHHHHHHHHHHhccc
Q 028686          131 K-------GQALADE-Y-----------G--IKFFETSAKTNLNVEQVFFSIARDIKQRLADT  172 (205)
Q Consensus       131 ~-------~~~~~~~-~-----------~--~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~~~  172 (205)
                      .       +.+|+.+ +           +  +.++++||.+|+||-+|+.+|++.......+.
T Consensus       631 F~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~k  693 (1064)
T KOG1144|consen  631 FKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEK  693 (1064)
T ss_pred             HHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHH
Confidence            0       1111110 0           1  55789999999999999999999888776654

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.28  E-value=3.5e-11  Score=90.42  Aligned_cols=55  Identities=22%  Similarity=0.185  Sum_probs=40.4

Q ss_pred             CcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC--CcEEEEcCCCCCCHHHHHHHHHHH
Q 028686          109 VNKVLVGNKADMDESKRAVPTSKGQALADEYG--IKFFETSAKTNLNVEQVFFSIARD  164 (205)
Q Consensus       109 ~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~~~~~i~~~  164 (205)
                      .|.++++||+|+.+.. ....++.....++.+  .+++++||+++.|++++|+++.+.
T Consensus       149 ~a~iiv~NK~Dl~~~~-~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       149 EADLIVINKADLAEAV-GFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             hCCEEEEEHHHccccc-hhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            5779999999996421 122333444444433  889999999999999999999875

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>cd01882 BMS1 Bms1

Probab=99.27  E-value=7.1e-11  Score=89.82  Aligned_cols=138  Identities=17%  Similarity=0.185  Sum_probs=80.8

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      ...|+++|.+|+|||||++.|....-........|. +   .+. ......+.++||||..  ..+ ....+.+|++++|
T Consensus        39 ~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i~-~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVllv  110 (225)
T cd01882          39 PLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TVV-TGKKRRLTFIECPNDI--NAM-IDIAKVADLVLLL  110 (225)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EEE-ecCCceEEEEeCCchH--HHH-HHHHHhcCEEEEE
Confidence            356899999999999999999875321111111121 1   111 1134567899999864  222 2345789999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCCCCcc--CHHHHHH-HHHHh--CCcEEEEcCCCCC
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKV-LVGNKADMDESKRAV--PTSKGQA-LADEY--GIKFFETSAKTNL  152 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-iv~nK~Dl~~~~~~~--~~~~~~~-~~~~~--~~~~~~~Sa~~~~  152 (205)
                      +|.+....... ..++..+..   .+.|.+ +|+||.|+.+.....  ..+++++ +..+.  +.+++.+||+++-
T Consensus       111 iDa~~~~~~~~-~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~  182 (225)
T cd01882         111 IDASFGFEMET-FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG  182 (225)
T ss_pred             EecCcCCCHHH-HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence            99976433222 223333332   346754 599999986422111  1122222 22222  3689999999873

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.27  E-value=9.2e-11  Score=93.41  Aligned_cols=107  Identities=15%  Similarity=0.127  Sum_probs=66.6

Q ss_pred             EEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC-ccCH
Q 028686           51 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-AVPT  129 (205)
Q Consensus        51 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~-~~~~  129 (205)
                      .+.+.++||+|..+....   ....+|.+++|.+....+.+..+.   ..+..     ..-++|+||+|+.+... ....
T Consensus       148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E-----~aDIiVVNKaDl~~~~~a~~~~  216 (332)
T PRK09435        148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGIME-----LADLIVINKADGDNKTAARRAA  216 (332)
T ss_pred             CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhhhh-----hhheEEeehhcccchhHHHHHH
Confidence            356899999997633322   456799999996644444333222   21222     22389999999864221 1112


Q ss_pred             HHHHHHHHH-------hCCcEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 028686          130 SKGQALADE-------YGIKFFETSAKTNLNVEQVFFSIARDIKQR  168 (205)
Q Consensus       130 ~~~~~~~~~-------~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~  168 (205)
                      .+.......       ...+++.+||+++.|++++++.+.+.+...
T Consensus       217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l  262 (332)
T PRK09435        217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAAL  262 (332)
T ss_pred             HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            223322221       125799999999999999999999876633

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.22  E-value=2e-10  Score=83.38  Aligned_cols=79  Identities=20%  Similarity=0.089  Sum_probs=50.9

Q ss_pred             EEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHh--CCcEEEEcCCCCCCHH
Q 028686           78 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY--GIKFFETSAKTNLNVE  155 (205)
Q Consensus        78 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~  155 (205)
                      .-|+|+|++..+-...  .-.+.+.+      .=++|+||.||.+. ...+.+...+-+++.  +.+++++|+++|+|++
T Consensus       120 ~~v~VidvteGe~~P~--K~gP~i~~------aDllVInK~DLa~~-v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~  190 (202)
T COG0378         120 LRVVVIDVTEGEDIPR--KGGPGIFK------ADLLVINKTDLAPY-VGADLEVMARDAKEVNPEAPIIFTNLKTGEGLD  190 (202)
T ss_pred             eEEEEEECCCCCCCcc--cCCCceeE------eeEEEEehHHhHHH-hCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHH
Confidence            6788888887542110  00111111      22789999999763 334444444444433  3899999999999999


Q ss_pred             HHHHHHHHHH
Q 028686          156 QVFFSIARDI  165 (205)
Q Consensus       156 ~~~~~i~~~~  165 (205)
                      ++++|+....
T Consensus       191 ~~~~~i~~~~  200 (202)
T COG0378         191 EWLRFIEPQA  200 (202)
T ss_pred             HHHHHHHhhc
Confidence            9999987653

>cd01900 YchF YchF subfamily

Probab=99.21  E-value=2.1e-10  Score=89.16  Aligned_cols=80  Identities=15%  Similarity=0.098  Sum_probs=52.7

Q ss_pred             EEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCE---------------EEEEEEEeCCChhh----hh
Q 028686            6 RIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK---------------RIKLQIWDTAGQER----FR   66 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~----~~   66 (205)
                      |+++|.|+||||||+|+|.+........|..+.+.....+.+.+.               ...+.++|+||...    ..
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            579999999999999999998764433343333333333333322               12589999999542    12


Q ss_pred             hhhhh---hccCCcEEEEEEeC
Q 028686           67 TITTA---YYRGAMGILLVYDV   85 (205)
Q Consensus        67 ~~~~~---~~~~~d~~i~v~d~   85 (205)
                      .+...   .++.+|++++|+|.
T Consensus        81 glg~~fL~~i~~~D~li~VV~~  102 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRC  102 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeC
Confidence            22223   35679999999986

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.20  E-value=2.7e-10  Score=94.33  Aligned_cols=150  Identities=18%  Similarity=0.126  Sum_probs=97.5

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhC-------------------------------CCCCCcccceeeEEEEEEEEECCEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDG-------------------------------SFTTSFITTIGIDFKIRTIELDGKR   51 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~~~~~   51 (205)
                      .+.++++|...+|||||+.+|+..                               +..++......++.....+..  ..
T Consensus       177 ~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes--~~  254 (603)
T KOG0458|consen  177 HLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES--KS  254 (603)
T ss_pred             ceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec--Cc
Confidence            367899999999999999988653                               112234455555555555543  44


Q ss_pred             EEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCCh---hHHHHHHHHH--HHHHhhcCCCCcEEEEEeCCCCCCCCCc
Q 028686           52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE---SSFNNIRNWI--RNIEQHASDNVNKVLVGNKADMDESKRA  126 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~--~~i~~~~~~~~piiiv~nK~Dl~~~~~~  126 (205)
                      ..+.+.|.||+..|......-...||++++|+|++..   ..|+.-.+..  ..+.+..+ -..++|++||+|+.+-+.+
T Consensus       255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg-i~qlivaiNKmD~V~Wsq~  333 (603)
T KOG0458|consen  255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG-ISQLIVAINKMDLVSWSQD  333 (603)
T ss_pred             eeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC-cceEEEEeecccccCccHH
Confidence            6689999999999988887778899999999999863   2333222222  22223322 2467788999998652111


Q ss_pred             ---cCHHHHHHHH-HHhC-----CcEEEEcCCCCCCHH
Q 028686          127 ---VPTSKGQALA-DEYG-----IKFFETSAKTNLNVE  155 (205)
Q Consensus       127 ---~~~~~~~~~~-~~~~-----~~~~~~Sa~~~~gi~  155 (205)
                         .....+..|. +..|     +.++++|..+|+|+-
T Consensus       334 RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~  371 (603)
T KOG0458|consen  334 RFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLI  371 (603)
T ss_pred             HHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccc
Confidence               1112223333 3333     679999999999865

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.18  E-value=1.8e-10  Score=92.58  Aligned_cols=158  Identities=13%  Similarity=0.088  Sum_probs=81.1

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCC-------cccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhh----
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTS-------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA----   71 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~-------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~----   71 (205)
                      +++|+|+|.+|+|||||||.|.+-.-...       ...|.....|. .-...    .+.+||.||..........    
T Consensus        35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~-~p~~p----nv~lWDlPG~gt~~f~~~~Yl~~  109 (376)
T PF05049_consen   35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYP-HPKFP----NVTLWDLPGIGTPNFPPEEYLKE  109 (376)
T ss_dssp             -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-T----TEEEEEE--GGGSS--HHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCC-CCCCC----CCeEEeCCCCCCCCCCHHHHHHH
Confidence            58999999999999999999976432111       11222222222 11222    3899999996532222222    


Q ss_pred             -hccCCcEEEEEEeCCChhHHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCC--CCC----CCccCH----HHHHHHHH--
Q 028686           72 -YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM--DES----KRAVPT----SKGQALAD--  137 (205)
Q Consensus        72 -~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piiiv~nK~Dl--~~~----~~~~~~----~~~~~~~~--  137 (205)
                       -+..-|.+|++.+-.    |..... +...+.+   .+.|+++|-+|.|.  .++    .....+    +++++.+.  
T Consensus       110 ~~~~~yD~fiii~s~r----f~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~  182 (376)
T PF05049_consen  110 VKFYRYDFFIIISSER----FTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLEN  182 (376)
T ss_dssp             TTGGG-SEEEEEESSS------HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHH
T ss_pred             ccccccCEEEEEeCCC----CchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHH
Confidence             245688877776533    332222 3344444   35899999999995  111    112222    22333322  


Q ss_pred             --HhC---CcEEEEcCCCC--CCHHHHHHHHHHHHHHHhccc
Q 028686          138 --EYG---IKFFETSAKTN--LNVEQVFFSIARDIKQRLADT  172 (205)
Q Consensus       138 --~~~---~~~~~~Sa~~~--~gi~~~~~~i~~~~~~~~~~~  172 (205)
                        +.|   -++|.+|+.+-  .++..+.+.+.+.+..+.+..
T Consensus       183 L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~~  224 (376)
T PF05049_consen  183 LQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRHA  224 (376)
T ss_dssp             HHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHHH
T ss_pred             HHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHHH
Confidence              223   36889998765  568888888888776665543

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.18  E-value=1.5e-09  Score=85.04  Aligned_cols=141  Identities=18%  Similarity=0.208  Sum_probs=75.5

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCC----------cccceeeEEEEEEEEECCEEEEEEEEeCCChhh-------
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTS----------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-------   64 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------   64 (205)
                      ..++|+|+|.+|+|||||+|.|++......          ..++.........+.-++..+.+.++||||..+       
T Consensus         3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~   82 (281)
T PF00735_consen    3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC   82 (281)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence            368999999999999999999998764322          123333444444555578889999999999321       


Q ss_pred             -----------hhhhh---------hhhccCCcEEEEEEeCCChh-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028686           65 -----------FRTIT---------TAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES  123 (205)
Q Consensus        65 -----------~~~~~---------~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~  123 (205)
                                 |....         ...=...|+++|.++.+... +-.++    +.+++.. ..+++|-|+.|+|....
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di----~~mk~Ls-~~vNvIPvIaKaD~lt~  157 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI----EFMKRLS-KRVNVIPVIAKADTLTP  157 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH----HHHHHHT-TTSEEEEEESTGGGS-H
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH----HHHHHhc-ccccEEeEEecccccCH
Confidence                       11000         00012578999999987531 11222    2333333 34889999999997431


Q ss_pred             -CCccCHHHHHHHHHHhCCcEEEEc
Q 028686          124 -KRAVPTSKGQALADEYGIKFFETS  147 (205)
Q Consensus       124 -~~~~~~~~~~~~~~~~~~~~~~~S  147 (205)
                       +.....+.+..-....++.+|...
T Consensus       158 ~el~~~k~~i~~~l~~~~I~~f~f~  182 (281)
T PF00735_consen  158 EELQAFKQRIREDLEENNIKIFDFP  182 (281)
T ss_dssp             HHHHHHHHHHHHHHHHTT--S----
T ss_pred             HHHHHHHHHHHHHHHHcCceeeccc
Confidence             111112223333445667666543

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.17  E-value=1.3e-09  Score=87.99  Aligned_cols=154  Identities=14%  Similarity=0.139  Sum_probs=92.2

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhC----CCCC----------Ccc-------cceeeEE---EEEEEE-ECCEEEEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDG----SFTT----------SFI-------TTIGIDF---KIRTIE-LDGKRIKLQIW   57 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~----~~~~----------~~~-------~t~~~~~---~~~~~~-~~~~~~~~~i~   57 (205)
                      .+-|.|+|+-++|||||+|+|.+.    ....          -..       .|+.+-+   ....+. .++...++.++
T Consensus        17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI   96 (492)
T TIGR02836        17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV   96 (492)
T ss_pred             cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence            367899999999999999999987    3220          011       2222223   122222 24556789999


Q ss_pred             eCCChhh--------hhh------h---------------hhhhcc-CCcEEEEEE-eCC----ChhHHHHH-HHHHHHH
Q 028686           58 DTAGQER--------FRT------I---------------TTAYYR-GAMGILLVY-DVT----DESSFNNI-RNWIRNI  101 (205)
Q Consensus        58 D~~g~~~--------~~~------~---------------~~~~~~-~~d~~i~v~-d~~----~~~s~~~~-~~~~~~i  101 (205)
                      ||+|-..        -..      -               ....+. .+++.++|. |.+    .++.+... ..|.+.+
T Consensus        97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL  176 (492)
T TIGR02836        97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL  176 (492)
T ss_pred             ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence            9998321        001      0               123344 789888888 664    12333333 2356666


Q ss_pred             HhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCC--CCCCHHHHHHHHH
Q 028686          102 EQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK--TNLNVEQVFFSIA  162 (205)
Q Consensus       102 ~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~gi~~~~~~i~  162 (205)
                      +.   .++|+++++|+.|-..   ....+...++...++++++.+|+.  +..+|..+++.++
T Consensus       177 k~---~~kPfiivlN~~dp~~---~et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL  233 (492)
T TIGR02836       177 KE---LNKPFIILLNSTHPYH---PETEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVL  233 (492)
T ss_pred             Hh---cCCCEEEEEECcCCCC---chhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHH
Confidence            55   4699999999999311   124444556667788887777763  3445555554443

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.17  E-value=8.4e-10  Score=86.46  Aligned_cols=159  Identities=18%  Similarity=0.170  Sum_probs=93.7

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCC----CCC---CcccceeeEEEEEEEEE-------CCEEEEEEEEeCCChhhhhhh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGS----FTT---SFITTIGIDFKIRTIEL-------DGKRIKLQIWDTAGQERFRTI   68 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~----~~~---~~~~t~~~~~~~~~~~~-------~~~~~~~~i~D~~g~~~~~~~   68 (205)
                      .+++.++|.-.||||||.++|..-.    |+.   .....+..|.....+.+       .+....+.++|+||+...-..
T Consensus         7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRt   86 (522)
T KOG0461|consen    7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRT   86 (522)
T ss_pred             eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHH
Confidence            4899999999999999999996532    221   22222333333333322       244578899999998754332


Q ss_pred             hhhhccCCcEEEEEEeCCC---hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC-CCccCH-HHHHHHHHHh----
Q 028686           69 TTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES-KRAVPT-SKGQALADEY----  139 (205)
Q Consensus        69 ~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~-~~~~~~-~~~~~~~~~~----  139 (205)
                      ...-..-.|..++|+|+.-   .++-+.+.     |-+..  -...+||+||.|+..+ .+.... +...++.+.+    
T Consensus        87 iiggaqiiDlm~lviDv~kG~QtQtAEcLi-----ig~~~--c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~  159 (522)
T KOG0461|consen   87 IIGGAQIIDLMILVIDVQKGKQTQTAECLI-----IGELL--CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTG  159 (522)
T ss_pred             HHhhhheeeeeeEEEehhcccccccchhhh-----hhhhh--ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcC
Confidence            2222233677889999875   33333321     11111  1346788899886543 222222 2233333332    


Q ss_pred             ---CCcEEEEcCCCC----CCHHHHHHHHHHHHHHH
Q 028686          140 ---GIKFFETSAKTN----LNVEQVFFSIARDIKQR  168 (205)
Q Consensus       140 ---~~~~~~~Sa~~~----~gi~~~~~~i~~~~~~~  168 (205)
                         +.|++++||..|    +++.++.+.+-.++.+-
T Consensus       160 f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P  195 (522)
T KOG0461|consen  160 FDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEP  195 (522)
T ss_pred             cCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCC
Confidence               279999999999    56666666666655443

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.15  E-value=1.7e-10  Score=89.42  Aligned_cols=185  Identities=16%  Similarity=0.122  Sum_probs=111.8

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCC---CCCcccceeeE--E----------------EEEEEEE--C----CEEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSF---TTSFITTIGID--F----------------KIRTIEL--D----GKRIKLQ   55 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~---~~~~~~t~~~~--~----------------~~~~~~~--~----~~~~~~~   55 (205)
                      .++|.++|.-.-|||||+.+|.+--.   .++....+.+-  |                +...-..  .    .-.-.+.
T Consensus        10 ~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~VS   89 (415)
T COG5257          10 EVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRVS   89 (415)
T ss_pred             ceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEEE
Confidence            37999999999999999999977421   11111111110  0                0000000  0    1123588


Q ss_pred             EEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC-CccCHHHHHH
Q 028686           56 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK-RAVPTSKGQA  134 (205)
Q Consensus        56 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-~~~~~~~~~~  134 (205)
                      |.|.||++-.-...-.-..-.|++++|++++.+..=.+....+..+...-  -..++|+=||.||...+ ....++++++
T Consensus        90 fVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~qIk~  167 (415)
T COG5257          90 FVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQIKE  167 (415)
T ss_pred             EeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHHHHH
Confidence            99999999644322222334899999999987433233333334443331  25688889999997522 2234566666


Q ss_pred             HHHHh---CCcEEEEcCCCCCCHHHHHHHHHHHHHHHhcccCCCC---CCccccccCCCCC
Q 028686          135 LADEY---GIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRS---EPSTIKINQPDQA  189 (205)
Q Consensus       135 ~~~~~---~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  189 (205)
                      |.+.-   +.|++.+||..+.||+-+++.|.+.+..-.++.....   -.++...++|+.+
T Consensus       168 FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~~~~p~m~v~RSFDVNkPGt~  228 (415)
T COG5257         168 FVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDLDKPPRMYVARSFDVNKPGTP  228 (415)
T ss_pred             HhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCCCCCceEEEEeecccCCCCCC
Confidence            66532   5899999999999999999999888866555444322   1234444555443

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=5.6e-10  Score=96.53  Aligned_cols=129  Identities=17%  Similarity=0.098  Sum_probs=87.7

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCC--CCC----------------CcccceeeEEEEEEEEECCEEEEEEEEeCCChh
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGS--FTT----------------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   63 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~--~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~   63 (205)
                      ..-+|.++|+-.+|||||..+|+...  .+.                +....+.+......+.+.+ ++.+.++|||||.
T Consensus         9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPGHV   87 (697)
T COG0480           9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPGHV   87 (697)
T ss_pred             cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCCcc
Confidence            35689999999999999999997542  111                0112222222223333333 5889999999999


Q ss_pred             hhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHH
Q 028686           64 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQAL  135 (205)
Q Consensus        64 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~  135 (205)
                      +|.....+.++-+|++++|+|+...-....-..|.+..    ..++|.++++||+|....+.....+++...
T Consensus        88 DFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~----~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~  155 (697)
T COG0480          88 DFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQAD----KYGVPRILFVNKMDRLGADFYLVVEQLKER  155 (697)
T ss_pred             ccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHh----hcCCCeEEEEECccccccChhhhHHHHHHH
Confidence            99999999999999999999998743222222233332    246999999999997766555555555443

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.14  E-value=3.6e-10  Score=89.57  Aligned_cols=105  Identities=13%  Similarity=0.115  Sum_probs=63.9

Q ss_pred             EEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccC-H
Q 028686           51 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP-T  129 (205)
Q Consensus        51 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~-~  129 (205)
                      .+.+.|+||+|.....   ...+..+|.++++-..   ++-+++......+     .+.|.++++||+|+.+...... .
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~---~~~~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~  194 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIP---GTGDDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIAR  194 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEecC---CccHHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHH
Confidence            3668899999865322   2245667887777433   3334443333333     2467899999999865321000 0


Q ss_pred             HH----HHHHHHH---hCCcEEEEcCCCCCCHHHHHHHHHHHHH
Q 028686          130 SK----GQALADE---YGIKFFETSAKTNLNVEQVFFSIARDIK  166 (205)
Q Consensus       130 ~~----~~~~~~~---~~~~~~~~Sa~~~~gi~~~~~~i~~~~~  166 (205)
                      .+    ...+...   ...+++.+||+++.|++++++++.+...
T Consensus       195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence            00    0111111   2246899999999999999999988754

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.12  E-value=3.6e-10  Score=93.03  Aligned_cols=162  Identities=23%  Similarity=0.365  Sum_probs=121.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      +|+.|+|..++|||+|+++++.+.+.....|--+  .+.+++-++++...+.+.|-+|...     ..|...+|+.||||
T Consensus        31 lk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIfvf  103 (749)
T KOG0705|consen   31 LKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFVF  103 (749)
T ss_pred             hheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCch-----hhhhhhccceEEEE
Confidence            7899999999999999999999988666555433  4556777788888889999988432     44666799999999


Q ss_pred             eCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCC-CCCccCHHHHHHH-HHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686           84 DVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDE-SKRAVPTSKGQAL-ADEYGIKFFETSAKTNLNVEQVFFS  160 (205)
Q Consensus        84 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~-~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~gi~~~~~~  160 (205)
                      .+.+.++|..+..+...+..+.. ..+|+++++.+.-... ..+.+......++ ++...+.||+..+.+|.+++.+|+.
T Consensus       104 ~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~  183 (749)
T KOG0705|consen  104 SVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQE  183 (749)
T ss_pred             EeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHHH
Confidence            99999999998877777765443 5688888887643211 1222333344443 4555589999999999999999999


Q ss_pred             HHHHHHHHhccc
Q 028686          161 IARDIKQRLADT  172 (205)
Q Consensus       161 i~~~~~~~~~~~  172 (205)
                      +...+...+..+
T Consensus       184 ~~~k~i~~~~~q  195 (749)
T KOG0705|consen  184 VAQKIVQLRKYQ  195 (749)
T ss_pred             HHHHHHHHHhhh
Confidence            988887765444

>cd01855 YqeH YqeH

Probab=99.11  E-value=9.8e-10  Score=81.43  Aligned_cols=94  Identities=20%  Similarity=0.207  Sum_probs=66.9

Q ss_pred             hhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHH-----HHh
Q 028686           65 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALA-----DEY  139 (205)
Q Consensus        65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~  139 (205)
                      +..++..+++++|++++|+|+.++..     .|...+.... .+.|+++|+||+|+.+.  ....+....+.     ...
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~-~~~~~ilV~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~   95 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFG-GNNPVILVGNKIDLLPK--DKNLVRIKNWLRAKAAAGL   95 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhc-CCCcEEEEEEchhcCCC--CCCHHHHHHHHHHHHHhhc
Confidence            57788899999999999999987542     1223332222 46899999999998642  22334444443     223


Q ss_pred             CC---cEEEEcCCCCCCHHHHHHHHHHHHH
Q 028686          140 GI---KFFETSAKTNLNVEQVFFSIARDIK  166 (205)
Q Consensus       140 ~~---~~~~~Sa~~~~gi~~~~~~i~~~~~  166 (205)
                      +.   .++++||+++.|++++++++.+.+.
T Consensus        96 ~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          96 GLKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             CCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            32   6899999999999999999988764

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.10  E-value=2e-10  Score=89.17  Aligned_cols=150  Identities=16%  Similarity=0.124  Sum_probs=96.0

Q ss_pred             EEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChh---------hhhhhhhhhccCC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE---------RFRTITTAYYRGA   76 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~~~~~   76 (205)
                      |.++|..|+|||||+++|..........-..+.|............ .+.+.||-|.-         .|+..... +..+
T Consensus       181 iavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~ATLee-Vaea  258 (410)
T KOG0410|consen  181 IAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQATLEE-VAEA  258 (410)
T ss_pred             EEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHHHHHH-Hhhc
Confidence            7899999999999999999765433322222223333333333222 46778999853         23333332 3469


Q ss_pred             cEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCc----EEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCC
Q 028686           77 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN----KVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL  152 (205)
Q Consensus        77 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p----iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  152 (205)
                      |.++.|.|++.|+.-++....+.-+...--+..|    ++=|-||.|.......         ..+++  .+.+|+++|.
T Consensus       259 dlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e---------~E~n~--~v~isaltgd  327 (410)
T KOG0410|consen  259 DLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE---------EEKNL--DVGISALTGD  327 (410)
T ss_pred             ceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc---------cccCC--ccccccccCc
Confidence            9999999999988776666555555544222222    3455688886432111         12222  5679999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q 028686          153 NVEQVFFSIARDIKQR  168 (205)
Q Consensus       153 gi~~~~~~i~~~~~~~  168 (205)
                      |++++.+.+-..+...
T Consensus       328 gl~el~~a~~~kv~~~  343 (410)
T KOG0410|consen  328 GLEELLKAEETKVASE  343 (410)
T ss_pred             cHHHHHHHHHHHhhhh
Confidence            9999999988877654

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.10  E-value=1.9e-09  Score=86.96  Aligned_cols=152  Identities=20%  Similarity=0.156  Sum_probs=105.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCC---CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSF---TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      -|+..|.---|||||+..+.+...   .+.-...+..|......+...  ..+.|+|.||++++-...-.-+...|.+++
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d--~~~~fIDvpgh~~~i~~miag~~~~d~alL   79 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED--GVMGFIDVPGHPDFISNLLAGLGGIDYALL   79 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC--CceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence            467889999999999999988753   233334444455444444433  478999999999988777777788999999


Q ss_pred             EEeCCC---hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHh---CCcEEEEcCCCCCCHH
Q 028686           82 VYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY---GIKFFETSAKTNLNVE  155 (205)
Q Consensus        82 v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~  155 (205)
                      |++.++   .++-+.+    ..+ ... .....++|++|+|..++.  -..+.++.+....   +.+++.+|+.+|+||+
T Consensus        80 vV~~deGl~~qtgEhL----~iL-dll-gi~~giivltk~D~~d~~--r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~  151 (447)
T COG3276          80 VVAADEGLMAQTGEHL----LIL-DLL-GIKNGIIVLTKADRVDEA--RIEQKIKQILADLSLANAKIFKTSAKTGRGIE  151 (447)
T ss_pred             EEeCccCcchhhHHHH----HHH-Hhc-CCCceEEEEeccccccHH--HHHHHHHHHHhhcccccccccccccccCCCHH
Confidence            999965   4555543    222 222 123458999999986532  1222333333322   3678999999999999


Q ss_pred             HHHHHHHHHHH
Q 028686          156 QVFFSIARDIK  166 (205)
Q Consensus       156 ~~~~~i~~~~~  166 (205)
                      ++.+.|.....
T Consensus       152 ~Lk~~l~~L~~  162 (447)
T COG3276         152 ELKNELIDLLE  162 (447)
T ss_pred             HHHHHHHHhhh
Confidence            99999999886

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.09  E-value=6.7e-10  Score=80.52  Aligned_cols=63  Identities=22%  Similarity=0.316  Sum_probs=43.2

Q ss_pred             EEEEEeCCChhh----hhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 028686           53 KLQIWDTAGQER----FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA  118 (205)
Q Consensus        53 ~~~i~D~~g~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~  118 (205)
                      .+.|+|+||...    ...+...++..+|++|+|.+.+..-+-.....+.+.....   ...+++|.||.
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence            378999999642    3466788889999999999999854444444444444433   24488888984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.08  E-value=3.8e-09  Score=89.82  Aligned_cols=116  Identities=18%  Similarity=0.178  Sum_probs=71.8

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCC-CCCc--ccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh-------hh---h
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSF-TTSF--ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------TI---T   69 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~-~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~---~   69 (205)
                      .++|+|+|.+|+||||++|.|++... ....  ..|..  ........++  ..+.++||||.....       .+   .
T Consensus       118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr--~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~I  193 (763)
T TIGR00993       118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS--VQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSV  193 (763)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE--EEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHH
Confidence            47899999999999999999999763 2222  22222  2222223444  568999999965321       11   1


Q ss_pred             hhhcc--CCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCC--CcEEEEEeCCCCCC
Q 028686           70 TAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN--VNKVLVGNKADMDE  122 (205)
Q Consensus        70 ~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~nK~Dl~~  122 (205)
                      ..++.  ..|++++|..++.......-..+++.|...++.+  ..+|||.++.|..+
T Consensus       194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence            22333  4789999988764332222224556665555433  47789999999764

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.04  E-value=9.6e-10  Score=85.61  Aligned_cols=55  Identities=20%  Similarity=0.140  Sum_probs=39.2

Q ss_pred             CcEEEEEeCCCCCCCCCccCHHHHHHHHHHh--CCcEEEEcCCCCCCHHHHHHHHHHH
Q 028686          109 VNKVLVGNKADMDESKRAVPTSKGQALADEY--GIKFFETSAKTNLNVEQVFFSIARD  164 (205)
Q Consensus       109 ~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~~~~~i~~~  164 (205)
                      ..-++|+||+|+.+. .....+...+..+..  .++++.+|+++|+|++++.+||.++
T Consensus       231 ~ADIVVLNKiDLl~~-~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        231 AASLMLLNKVDLLPY-LNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             cCcEEEEEhHHcCcc-cHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            455999999999642 112233333333333  4789999999999999999999774

>smart00053 DYNc Dynamin, GTPase

Probab=99.04  E-value=4.4e-09  Score=80.29  Aligned_cols=68  Identities=13%  Similarity=0.213  Sum_probs=42.2

Q ss_pred             EEEEEEeCCChhh-------------hhhhhhhhccC-CcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 028686           52 IKLQIWDTAGQER-------------FRTITTAYYRG-AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNK  117 (205)
Q Consensus        52 ~~~~i~D~~g~~~-------------~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK  117 (205)
                      ..+.++|+||-..             ...+...|+++ .+++++|+|+...-.-.....+.+.+.   ..+.|+++|+||
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld---~~~~rti~ViTK  201 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD---PQGERTIGVITK  201 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH---HcCCcEEEEEEC
Confidence            3588999999642             22345667774 568888998764211112222223332   246899999999


Q ss_pred             CCCCC
Q 028686          118 ADMDE  122 (205)
Q Consensus       118 ~Dl~~  122 (205)
                      .|..+
T Consensus       202 ~D~~~  206 (240)
T smart00053      202 LDLMD  206 (240)
T ss_pred             CCCCC
Confidence            99864

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.02  E-value=7.8e-09  Score=82.25  Aligned_cols=84  Identities=15%  Similarity=0.080  Sum_probs=55.8

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceee--EEEEEEEEE----------C----CEEEEEEEEeCCChh---
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGI--DFKIRTIEL----------D----GKRIKLQIWDTAGQE---   63 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~--~~~~~~~~~----------~----~~~~~~~i~D~~g~~---   63 (205)
                      -+++.++|.||+|||||.|.+..........|..++  ......+..          .    -....+.++|.+|-.   
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            478999999999999999999988754333343332  222222211          1    124568899999843   


Q ss_pred             -hhhhhhhhh---ccCCcEEEEEEeCC
Q 028686           64 -RFRTITTAY---YRGAMGILLVYDVT   86 (205)
Q Consensus        64 -~~~~~~~~~---~~~~d~~i~v~d~~   86 (205)
                       +-+.+-..|   ++.+|+++.|+++.
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence             334444444   56899999999964

>cd01859 MJ1464 MJ1464

Probab=99.00  E-value=3.5e-09  Score=75.93  Aligned_cols=95  Identities=20%  Similarity=0.173  Sum_probs=65.1

Q ss_pred             hhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEE
Q 028686           65 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFF  144 (205)
Q Consensus        65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  144 (205)
                      ++.+..++++++|++++|+|+.++....+. .+...+.   ..+.|+++|+||+|+.+. ..  .+....+....+.+++
T Consensus         2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~---~~~~p~iiv~NK~Dl~~~-~~--~~~~~~~~~~~~~~~~   74 (156)
T cd01859           2 WKRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVL---ELGKKLLIVLNKADLVPK-EV--LEKWKSIKESEGIPVV   74 (156)
T ss_pred             HHHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHH---hCCCcEEEEEEhHHhCCH-HH--HHHHHHHHHhCCCcEE
Confidence            345677888899999999999875432221 1222222   135899999999998531 11  1122233344567899


Q ss_pred             EEcCCCCCCHHHHHHHHHHHHH
Q 028686          145 ETSAKTNLNVEQVFFSIARDIK  166 (205)
Q Consensus       145 ~~Sa~~~~gi~~~~~~i~~~~~  166 (205)
                      .+||+++.|++++++.+.+.+.
T Consensus        75 ~iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          75 YVSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             EEEccccccHHHHHHHHHHHHh
Confidence            9999999999999999987764

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.96  E-value=3.2e-08  Score=78.37  Aligned_cols=139  Identities=19%  Similarity=0.259  Sum_probs=86.0

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCC----------cccceeeEEEEEEEEECCEEEEEEEEeCCChhhh---h--
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTS----------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF---R--   66 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---~--   66 (205)
                      ..++|+++|.+|+|||||+|.|++......          ..+++.+..+...+.-++..+.+.++||||..++   .  
T Consensus        22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~  101 (373)
T COG5019          22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC  101 (373)
T ss_pred             CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence            468999999999999999999998743221          3455555666666666788889999999994221   1  


Q ss_pred             ---------hhhhhhc--------------cCCcEEEEEEeCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686           67 ---------TITTAYY--------------RGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE  122 (205)
Q Consensus        67 ---------~~~~~~~--------------~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~  122 (205)
                               .....|+              .+.|+++|.+..+.. .+..+. ..+..+..    .+-+|=|+-|+|...
T Consensus       102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls~----~vNlIPVI~KaD~lT  176 (373)
T COG5019         102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLSK----RVNLIPVIAKADTLT  176 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHhc----ccCeeeeeeccccCC
Confidence                     1111111              147888888876642 222222 12333333    356777789999743


Q ss_pred             -CCCccCHHHHHHHHHHhCCcEEE
Q 028686          123 -SKRAVPTSKGQALADEYGIKFFE  145 (205)
Q Consensus       123 -~~~~~~~~~~~~~~~~~~~~~~~  145 (205)
                       .+.....+.+.+.....++++|.
T Consensus       177 ~~El~~~K~~I~~~i~~~nI~vf~  200 (373)
T COG5019         177 DDELAEFKERIREDLEQYNIPVFD  200 (373)
T ss_pred             HHHHHHHHHHHHHHHHHhCCceeC
Confidence             12222234445555666788774

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=98.96  E-value=6e-09  Score=84.03  Aligned_cols=129  Identities=15%  Similarity=0.134  Sum_probs=85.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC--CC--------------------CCcccceeeEEEEEEEEECCEEEEEEEEeCCCh
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS--FT--------------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   62 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~--~~--------------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~   62 (205)
                      ..+|+-.|.+|||||...|+.-.  +.                    -+....+.......++.+++  ..+.+.||||+
T Consensus        14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~--~~iNLLDTPGH   91 (528)
T COG4108          14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYAD--CLVNLLDTPGH   91 (528)
T ss_pred             ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCC--eEEeccCCCCc
Confidence            46899999999999999985310  00                    01223333334444555554  77899999999


Q ss_pred             hhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCc
Q 028686           63 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIK  142 (205)
Q Consensus        63 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  142 (205)
                      ++|..-..+.+-.+|.+++|+|+...-. .+...+++-++-   .++||+-++||.|-..   .-..+.+.++.+.+++.
T Consensus        92 eDFSEDTYRtLtAvDsAvMVIDaAKGiE-~qT~KLfeVcrl---R~iPI~TFiNKlDR~~---rdP~ELLdEiE~~L~i~  164 (528)
T COG4108          92 EDFSEDTYRTLTAVDSAVMVIDAAKGIE-PQTLKLFEVCRL---RDIPIFTFINKLDREG---RDPLELLDEIEEELGIQ  164 (528)
T ss_pred             cccchhHHHHHHhhheeeEEEecccCcc-HHHHHHHHHHhh---cCCceEEEeecccccc---CChHHHHHHHHHHhCcc
Confidence            9988766677778999999999976321 223334444433   5799999999999632   22345555666666543

>PRK12288 GTPase RsgA; Reviewed

Probab=98.95  E-value=5.2e-09  Score=84.23  Aligned_cols=88  Identities=18%  Similarity=0.203  Sum_probs=66.9

Q ss_pred             ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCC
Q 028686           73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL  152 (205)
Q Consensus        73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  152 (205)
                      ..++|.+++|+++....++..+..|+..+..   .++|++||+||+||.+........+........+++++++||+++.
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~  194 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE  194 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            4679999999999888899999999875542   4689999999999964221111122233344567899999999999


Q ss_pred             CHHHHHHHHHH
Q 028686          153 NVEQVFFSIAR  163 (205)
Q Consensus       153 gi~~~~~~i~~  163 (205)
                      |++++++.+..
T Consensus       195 GideL~~~L~~  205 (347)
T PRK12288        195 GLEELEAALTG  205 (347)
T ss_pred             CHHHHHHHHhh
Confidence            99999998865

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.95  E-value=4.4e-09  Score=82.87  Aligned_cols=88  Identities=15%  Similarity=0.147  Sum_probs=68.0

Q ss_pred             hhhccCCcEEEEEEeCCChh-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcC
Q 028686           70 TAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSA  148 (205)
Q Consensus        70 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  148 (205)
                      ..++.++|.+++|+|+.++. ++..+..|+..+..   .++|+++|+||+||.+. .  .......+....+.+++.+||
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~-~--~~~~~~~~~~~~g~~v~~vSA  146 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDD-E--EEELELVEALALGYPVLAVSA  146 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCCh-H--HHHHHHHHHHhCCCeEEEEEC
Confidence            44588999999999999987 88888888877654   35899999999999542 1  111223334456789999999


Q ss_pred             CCCCCHHHHHHHHHH
Q 028686          149 KTNLNVEQVFFSIAR  163 (205)
Q Consensus       149 ~~~~gi~~~~~~i~~  163 (205)
                      +++.|+++++..+..
T Consensus       147 ~~g~gi~~L~~~L~~  161 (287)
T cd01854         147 KTGEGLDELREYLKG  161 (287)
T ss_pred             CCCccHHHHHhhhcc
Confidence            999999999988753

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=98.94  E-value=3e-09  Score=89.49  Aligned_cols=114  Identities=25%  Similarity=0.238  Sum_probs=80.2

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCc---------c--------cceeeEEEEEEE---EECCEEEEEEEEeCCCh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSF---------I--------TTIGIDFKIRTI---ELDGKRIKLQIWDTAGQ   62 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~---------~--------~t~~~~~~~~~~---~~~~~~~~~~i~D~~g~   62 (205)
                      ..+|+++|.-++|||+|+..|....-+...         .        ....+...+.++   +.+++.+-+.+.||||+
T Consensus       128 irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGH  207 (971)
T KOG0468|consen  128 IRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGH  207 (971)
T ss_pred             EEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCc
Confidence            468999999999999999999765422211         0        111111111222   23567788999999999


Q ss_pred             hhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028686           63 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM  120 (205)
Q Consensus        63 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl  120 (205)
                      .+|.....+.++.+|++++|+|+.+.-.+..-    ..|+..-....|+++|+||.|.
T Consensus       208 VnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE----r~ikhaiq~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  208 VNFSDETTASLRLSDGVVLVVDVAEGVMLNTE----RIIKHAIQNRLPIVVVINKVDR  261 (971)
T ss_pred             ccchHHHHHHhhhcceEEEEEEcccCceeeHH----HHHHHHHhccCcEEEEEehhHH
Confidence            99998888899999999999999876554331    1222222356999999999994

>PRK12289 GTPase RsgA; Reviewed

Probab=98.93  E-value=8.3e-09  Score=83.14  Aligned_cols=91  Identities=19%  Similarity=0.248  Sum_probs=66.6

Q ss_pred             hhhhhhccCCcEEEEEEeCCChh-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEE
Q 028686           67 TITTAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFE  145 (205)
Q Consensus        67 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  145 (205)
                      .+....+.++|.+++|+|+.++. ....+..|+..+..   .++|+++|+||+||.+. ..  .+.........++.++.
T Consensus        81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~-~~--~~~~~~~~~~~g~~v~~  154 (352)
T PRK12289         81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSP-TE--QQQWQDRLQQWGYQPLF  154 (352)
T ss_pred             ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCCh-HH--HHHHHHHHHhcCCeEEE
Confidence            44455688999999999998875 44556667665532   46999999999999531 11  12222333466788999


Q ss_pred             EcCCCCCCHHHHHHHHHH
Q 028686          146 TSAKTNLNVEQVFFSIAR  163 (205)
Q Consensus       146 ~Sa~~~~gi~~~~~~i~~  163 (205)
                      +||+++.|++++++.+..
T Consensus       155 iSA~tg~GI~eL~~~L~~  172 (352)
T PRK12289        155 ISVETGIGLEALLEQLRN  172 (352)
T ss_pred             EEcCCCCCHHHHhhhhcc
Confidence            999999999999998864

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.93  E-value=9e-09  Score=77.09  Aligned_cols=164  Identities=17%  Similarity=0.218  Sum_probs=99.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEE--EEEECCEEEEEEEEeCCChhhhh---hhhhhhccCCcE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIR--TIELDGKRIKLQIWDTAGQERFR---TITTAYYRGAMG   78 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~~~i~D~~g~~~~~---~~~~~~~~~~d~   78 (205)
                      -+|+++|...+||||+-........+.   .|.-.+...+  .-.+.+.-+.+.+||+||+-.+-   --....++.+.+
T Consensus        28 p~ilLMG~rRsGKsSI~KVVFhkMsPn---eTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gA  104 (347)
T KOG3887|consen   28 PRILLMGLRRSGKSSIQKVVFHKMSPN---ETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGA  104 (347)
T ss_pred             ceEEEEeecccCcchhhheeeeccCCC---ceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCe
Confidence            469999999999999876665543211   1111111111  11223344779999999985421   114567889999


Q ss_pred             EEEEEeCCCh--hHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccC-HHHHH-----HHHH----HhCCcEEEE
Q 028686           79 ILLVYDVTDE--SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP-TSKGQ-----ALAD----EYGIKFFET  146 (205)
Q Consensus        79 ~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~-~~~~~-----~~~~----~~~~~~~~~  146 (205)
                      +|+|+|+.+.  +.+.++.....+.... ++++-+=+.+.|.|...++..+. ..++.     +++.    ...+.++.+
T Consensus       105 LifvIDaQddy~eala~L~~~v~raykv-Np~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LT  183 (347)
T KOG3887|consen  105 LIFVIDAQDDYMEALARLHMTVERAYKV-NPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLT  183 (347)
T ss_pred             EEEEEechHHHHHHHHHHHHHhhheeec-CCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEe
Confidence            9999999762  3333333333332222 27788889999999654333221 11111     1111    112668888


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHhccc
Q 028686          147 SAKTNLNVEQVFFSIARDIKQRLADT  172 (205)
Q Consensus       147 Sa~~~~gi~~~~~~i~~~~~~~~~~~  172 (205)
                      |..+. .|-|+|..+++.+.++.+-.
T Consensus       184 SIyDH-SIfEAFSkvVQkLipqLptL  208 (347)
T KOG3887|consen  184 SIYDH-SIFEAFSKVVQKLIPQLPTL  208 (347)
T ss_pred             eecch-HHHHHHHHHHHHHhhhchhH
Confidence            88876 69999999998887776543

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.90  E-value=2.2e-08  Score=77.07  Aligned_cols=138  Identities=18%  Similarity=0.172  Sum_probs=88.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC----------CC------CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG----------SF------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT   67 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~----------~~------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~   67 (205)
                      +||..+|.-.-|||||..++...          .+      +++...  |++.....+.+.-.+-.+-..|+||+.+|-.
T Consensus        13 VNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~r--GITIntahveyet~~rhyahVDcPGHaDYvK   90 (394)
T COG0050          13 VNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKAR--GITINTAHVEYETANRHYAHVDCPGHADYVK   90 (394)
T ss_pred             eEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhc--CceeccceeEEecCCceEEeccCCChHHHHH
Confidence            78999999999999999887431          01      112222  2333333333333334577889999999987


Q ss_pred             hhhhhccCCcEEEEEEeCCC---hhHHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCCCC--ccCHHHHHHHHHHhC-
Q 028686           68 ITTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKV-LVGNKADMDESKR--AVPTSKGQALADEYG-  140 (205)
Q Consensus        68 ~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~pii-iv~nK~Dl~~~~~--~~~~~~~~~~~~~~~-  140 (205)
                      +...-..+.|++|+|+++++   |++-+++       .-...-++|.+ ++.||.|+.++..  +.-..+.+++..+++ 
T Consensus        91 NMItgAaqmDgAILVVsA~dGpmPqTrEHi-------LlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f  163 (394)
T COG0050          91 NMITGAAQMDGAILVVAATDGPMPQTREHI-------LLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGF  163 (394)
T ss_pred             HHhhhHHhcCccEEEEEcCCCCCCcchhhh-------hhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCC
Confidence            66666668999999999988   4444332       22222357655 4589999976322  223445667777776 


Q ss_pred             ----CcEEEEcCCC
Q 028686          141 ----IKFFETSAKT  150 (205)
Q Consensus       141 ----~~~~~~Sa~~  150 (205)
                          .|++.-||..
T Consensus       164 ~gd~~Pii~gSal~  177 (394)
T COG0050         164 PGDDTPIIRGSALK  177 (394)
T ss_pred             CCCCcceeechhhh
Confidence                5677777644

>PRK00098 GTPase RsgA; Reviewed

Probab=98.88  E-value=8.6e-09  Score=81.61  Aligned_cols=86  Identities=17%  Similarity=0.201  Sum_probs=64.0

Q ss_pred             hccCCcEEEEEEeCCChhHHHH-HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCC
Q 028686           72 YYRGAMGILLVYDVTDESSFNN-IRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT  150 (205)
Q Consensus        72 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  150 (205)
                      +..++|.+++|+|+.+++++.. +..|+..+..   .++|+++|+||+||.+. . ...++.....+..+.+++++||++
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~-~-~~~~~~~~~~~~~g~~v~~vSA~~  151 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDD-L-EEARELLALYRAIGYDVLELSAKE  151 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCC-H-HHHHHHHHHHHHCCCeEEEEeCCC
Confidence            3589999999999988866544 4567666543   46899999999999531 1 112233444556688999999999


Q ss_pred             CCCHHHHHHHHH
Q 028686          151 NLNVEQVFFSIA  162 (205)
Q Consensus       151 ~~gi~~~~~~i~  162 (205)
                      +.|+++++..+.
T Consensus       152 g~gi~~L~~~l~  163 (298)
T PRK00098        152 GEGLDELKPLLA  163 (298)
T ss_pred             CccHHHHHhhcc
Confidence            999999998863

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=98.87  E-value=8e-08  Score=72.02  Aligned_cols=146  Identities=20%  Similarity=0.220  Sum_probs=83.6

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCC---------CcccceeeEEEEEEEEECCEEEEEEEEeCCChhhh-------
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTT---------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-------   65 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~---------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------   65 (205)
                      +.|+|.|+|.+|.|||||+|.|.......         .++.|+.+......+.-++...++.++||||..++       
T Consensus        45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW  124 (336)
T KOG1547|consen   45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW  124 (336)
T ss_pred             CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence            45899999999999999999997654322         23334444555555556777889999999994321       


Q ss_pred             -------hhhhhhh------------cc--CCcEEEEEEeCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCC-
Q 028686           66 -------RTITTAY------------YR--GAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE-  122 (205)
Q Consensus        66 -------~~~~~~~------------~~--~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~-  122 (205)
                             ...++.|            +.  .+++++|.+..+.. ++.-+. .++..+.+.    +-++-|+-|+|-.. 
T Consensus       125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~v----vNvvPVIakaDtlTl  199 (336)
T KOG1547|consen  125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTEV----VNVVPVIAKADTLTL  199 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhhh----heeeeeEeecccccH
Confidence                   1111222            22  36677777766643 333332 133334332    45666778999532 


Q ss_pred             CCCccCHHHHHHHHHHhCCcEEEEcCCCCC
Q 028686          123 SKRAVPTSKGQALADEYGIKFFETSAKTNL  152 (205)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  152 (205)
                      +++....+.+++-...+++.++.--+.+-.
T Consensus       200 eEr~~FkqrI~~el~~~~i~vYPq~~fded  229 (336)
T KOG1547|consen  200 EERSAFKQRIRKELEKHGIDVYPQDSFDED  229 (336)
T ss_pred             HHHHHHHHHHHHHHHhcCcccccccccccc
Confidence            112122233333344556776665555443

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.87  E-value=3e-09  Score=80.92  Aligned_cols=104  Identities=16%  Similarity=0.127  Sum_probs=60.3

Q ss_pred             EEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHH
Q 028686           52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK  131 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~  131 (205)
                      +.+.|++|.|--+..   -....-+|.+++|....-.+....+.   ..+...     .=++|+||.|.+.+  +....+
T Consensus       122 ~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~K---aGimEi-----aDi~vVNKaD~~gA--~~~~~~  188 (266)
T PF03308_consen  122 FDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIK---AGIMEI-----ADIFVVNKADRPGA--DRTVRD  188 (266)
T ss_dssp             -SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB----TTHHHH------SEEEEE--SHHHH--HHHHHH
T ss_pred             CCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHh---hhhhhh-----ccEEEEeCCChHHH--HHHHHH
Confidence            457778887643322   12344599999998776554433322   222222     23899999996442  223333


Q ss_pred             HHHHHHHh-------CCcEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 028686          132 GQALADEY-------GIKFFETSAKTNLNVEQVFFSIARDIKQR  168 (205)
Q Consensus       132 ~~~~~~~~-------~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~  168 (205)
                      .+....-.       ..+++.+||.++.|++++++.|.+.....
T Consensus       189 l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l  232 (266)
T PF03308_consen  189 LRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYL  232 (266)
T ss_dssp             HHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence            33333211       25899999999999999999988765443

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.86  E-value=1.8e-07  Score=70.61  Aligned_cols=85  Identities=22%  Similarity=0.164  Sum_probs=59.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh-------hhhhhhccCC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------TITTAYYRGA   76 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~   76 (205)
                      -||+++|.|.+|||||+..+....-.......+..+..+-.+.+++  -.+++.|.||.-.-.       ....+..+.|
T Consensus        63 aRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavArta  140 (364)
T KOG1486|consen   63 ARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVARTA  140 (364)
T ss_pred             eEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEeecc
Confidence            4899999999999999999987654333333333456666677777  557889999853211       2234456789


Q ss_pred             cEEEEEEeCCChhH
Q 028686           77 MGILLVYDVTDESS   90 (205)
Q Consensus        77 d~~i~v~d~~~~~s   90 (205)
                      |.+++|.|++..+.
T Consensus       141 DlilMvLDatk~e~  154 (364)
T KOG1486|consen  141 DLILMVLDATKSED  154 (364)
T ss_pred             cEEEEEecCCcchh
Confidence            99999999987543

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.86  E-value=1.9e-08  Score=81.62  Aligned_cols=95  Identities=23%  Similarity=0.303  Sum_probs=70.6

Q ss_pred             hhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHH----HHH
Q 028686           62 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQA----LAD  137 (205)
Q Consensus        62 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~----~~~  137 (205)
                      .++|..+...+...++++++|+|+.+.+     ..|.+.+.+.. .+.|+++|+||+|+.+  .....+++..    +++
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-~~~piilV~NK~DLl~--k~~~~~~~~~~l~~~~k  121 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-GGNPVLLVGNKIDLLP--KSVNLSKIKEWMKKRAK  121 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-CCCCEEEEEEchhhCC--CCCCHHHHHHHHHHHHH
Confidence            4578888888889999999999997643     23445555544 2579999999999964  2333444443    355


Q ss_pred             HhCC---cEEEEcCCCCCCHHHHHHHHHHH
Q 028686          138 EYGI---KFFETSAKTNLNVEQVFFSIARD  164 (205)
Q Consensus       138 ~~~~---~~~~~Sa~~~~gi~~~~~~i~~~  164 (205)
                      +.++   .++++||+++.|++++|+.+.+.
T Consensus       122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       122 ELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             HcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            6665   48999999999999999998654

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.84  E-value=1e-07  Score=76.04  Aligned_cols=146  Identities=17%  Similarity=0.170  Sum_probs=85.4

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCC---------cccceeeEEEEEEEEECCEEEEEEEEeCCChhhh-------
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTS---------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-------   65 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~---------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------   65 (205)
                      ..|.+.++|.+|.|||||+|.|+...+...         ...+.........+.-+|..+.++++||||..+.       
T Consensus        20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w   99 (366)
T KOG2655|consen   20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW   99 (366)
T ss_pred             CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence            358999999999999999999988754321         1224444444445555778889999999994220       


Q ss_pred             -------hhhhhh-----------hcc--CCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC-C
Q 028686           66 -------RTITTA-----------YYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES-K  124 (205)
Q Consensus        66 -------~~~~~~-----------~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~-~  124 (205)
                             .+....           .+.  ..|+++|.+..+.. .+..+.-  ..+.... ..+.+|-|+-|+|.... +
T Consensus       100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di--~~Mk~l~-~~vNiIPVI~KaD~lT~~E  175 (366)
T KOG2655|consen  100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDI--EFMKKLS-KKVNLIPVIAKADTLTKDE  175 (366)
T ss_pred             hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhH--HHHHHHh-ccccccceeeccccCCHHH
Confidence                   011111           122  58899999887653 2222211  2222222 34778888899997431 1


Q ss_pred             CccCHHHHHHHHHHhCCcEEEEcCCCC
Q 028686          125 RAVPTSKGQALADEYGIKFFETSAKTN  151 (205)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~  151 (205)
                      .......+..-....++++|.......
T Consensus       176 l~~~K~~I~~~i~~~nI~vf~fp~~~~  202 (366)
T KOG2655|consen  176 LNQFKKRIRQDIEEHNIKVFDFPTDES  202 (366)
T ss_pred             HHHHHHHHHHHHHHcCcceecCCCCcc
Confidence            112233334444556677665554433

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.79  E-value=1.5e-08  Score=71.56  Aligned_cols=54  Identities=22%  Similarity=0.171  Sum_probs=38.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCCh
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   62 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~   62 (205)
                      +++++|.+|+|||||+|+|.+..... .....+.+.....+.+++   .+.+|||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVS-VSATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcee-eCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence            68999999999999999999877532 222233333444455544   4799999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=98.77  E-value=4.1e-08  Score=75.93  Aligned_cols=107  Identities=21%  Similarity=0.162  Sum_probs=64.2

Q ss_pred             EEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHH
Q 028686           52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK  131 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~  131 (205)
                      +.+.|++|.|--+..   -....-+|.+++|.-.--.+...-+   -..+....     =++|+||.|..+++  ....+
T Consensus       144 ~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~i---K~GimEia-----Di~vINKaD~~~A~--~a~r~  210 (323)
T COG1703         144 YDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGI---KAGIMEIA-----DIIVINKADRKGAE--KAARE  210 (323)
T ss_pred             CCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHH---Hhhhhhhh-----heeeEeccChhhHH--HHHHH
Confidence            457888887754333   2244458888887654444433332   23333322     28999999964421  12222


Q ss_pred             HHHHHH-------HhC--CcEEEEcCCCCCCHHHHHHHHHHHHHHHhcc
Q 028686          132 GQALAD-------EYG--IKFFETSAKTNLNVEQVFFSIARDIKQRLAD  171 (205)
Q Consensus       132 ~~~~~~-------~~~--~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~~  171 (205)
                      ......       ..+  -+++.+||..|+|++++++.+.+........
T Consensus       211 l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~s  259 (323)
T COG1703         211 LRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTES  259 (323)
T ss_pred             HHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhc
Confidence            222111       122  5799999999999999999998877655443

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.67  E-value=1.2e-07  Score=67.96  Aligned_cols=85  Identities=22%  Similarity=0.120  Sum_probs=55.5

Q ss_pred             cEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHH
Q 028686           77 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ  156 (205)
Q Consensus        77 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  156 (205)
                      |++++|+|+.++.+....  ++.. ......+.|+++|+||+|+.+. . ...+....+....+..++.+||+++.|+++
T Consensus         1 Dvvl~VvD~~~p~~~~~~--~i~~-~~~~~~~~p~IiVlNK~Dl~~~-~-~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~   75 (155)
T cd01849           1 DVILEVLDARDPLGTRSP--DIER-VLIKEKGKKLILVLNKADLVPK-E-VLRKWLAYLRHSYPTIPFKISATNGQGIEK   75 (155)
T ss_pred             CEEEEEEeccCCccccCH--HHHH-HHHhcCCCCEEEEEechhcCCH-H-HHHHHHHHHHhhCCceEEEEeccCCcChhh
Confidence            689999999887654432  2221 1112246899999999998531 1 001111223233346688999999999999


Q ss_pred             HHHHHHHHHH
Q 028686          157 VFFSIARDIK  166 (205)
Q Consensus       157 ~~~~i~~~~~  166 (205)
                      +++.+.+...
T Consensus        76 L~~~i~~~~~   85 (155)
T cd01849          76 KESAFTKQTN   85 (155)
T ss_pred             HHHHHHHHhH
Confidence            9999987654

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01858 NGP_1 NGP-1

Probab=98.64  E-value=1.7e-07  Score=67.29  Aligned_cols=91  Identities=15%  Similarity=0.147  Sum_probs=56.9

Q ss_pred             hccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCC
Q 028686           72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN  151 (205)
Q Consensus        72 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  151 (205)
                      .+..+|++++|+|+.++..-. ...+...+... ..+.|+++|+||+|+.+. . ...+....+.+.+....+.+||+.+
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~-~-~~~~~~~~~~~~~~~~~~~iSa~~~   80 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTR-CKHVEEYLKKE-KPHKHLIFVLNKCDLVPT-W-VTARWVKILSKEYPTIAFHASINNP   80 (157)
T ss_pred             hhhhCCEEEEEEECCCCcccc-CHHHHHHHHhc-cCCCCEEEEEEchhcCCH-H-HHHHHHHHHhcCCcEEEEEeecccc
Confidence            466899999999998863211 11222333322 345899999999999531 1 1111122222222233577999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 028686          152 LNVEQVFFSIARDIK  166 (205)
Q Consensus       152 ~gi~~~~~~i~~~~~  166 (205)
                      .|++++++.+.+...
T Consensus        81 ~~~~~L~~~l~~~~~   95 (157)
T cd01858          81 FGKGSLIQLLRQFSK   95 (157)
T ss_pred             ccHHHHHHHHHHHHh
Confidence            999999999976543

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.61  E-value=1.2e-07  Score=69.04  Aligned_cols=55  Identities=22%  Similarity=0.262  Sum_probs=37.3

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCC
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG   61 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g   61 (205)
                      .++++++|.||+|||||+|+|.+...... .+..|.+.....+.++.   .+.++||||
T Consensus       117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~-~~~pg~T~~~~~~~~~~---~~~l~DtPG  171 (172)
T cd04178         117 SITVGVVGFPNVGKSSLINSLKRSRACNV-GATPGVTKSMQEVHLDK---KVKLLDSPG  171 (172)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccccee-cCCCCeEcceEEEEeCC---CEEEEECcC
Confidence            37899999999999999999998764211 12223333333333332   478999998

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01858 NGP_1 NGP-1

Probab=98.60  E-value=1.6e-07  Score=67.45  Aligned_cols=54  Identities=19%  Similarity=0.190  Sum_probs=35.5

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCC
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAG   61 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g   61 (205)
                      .++|+++|.||+|||||+|+|.+.... ....+  |.+.....+..+.   .+.++||||
T Consensus       102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~--g~T~~~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIP--GETKVWQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCC--CeeEeEEEEEcCC---CEEEEECcC
Confidence            467899999999999999999986532 22222  2222222333322   368999998

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.59  E-value=1.7e-07  Score=71.66  Aligned_cols=154  Identities=18%  Similarity=0.145  Sum_probs=86.6

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCccc-ceeeEEEEEEEEECCEEEEEEEEeCCCh----------hhhhhhhhh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFIT-TIGIDFKIRTIELDGKRIKLQIWDTAGQ----------ERFRTITTA   71 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~~~   71 (205)
                      +.+++++|.+++|||+|+|-+...+....... +.|.......+.++   -.+.+.|.||-          .++..+...
T Consensus       136 ~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~---~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~  212 (320)
T KOG2486|consen  136 RPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG---KSWYEVDLPGYGRAGYGFELPADWDKFTKS  212 (320)
T ss_pred             CceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc---ceEEEEecCCcccccCCccCcchHhHhHHH
Confidence            47899999999999999999988764322222 44433333333333   35788999991          123333344


Q ss_pred             hccCC---cEEEEEEeCCChhHHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCCCCCCc-c--CHHHHHH-------HHH
Q 028686           72 YYRGA---MGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDESKRA-V--PTSKGQA-------LAD  137 (205)
Q Consensus        72 ~~~~~---d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~-~--~~~~~~~-------~~~  137 (205)
                      |+.+-   --+++++|++-+-  ..+.. ..+.+.+   .++|+.+|+||+|-...-.. .  ....+..       -..
T Consensus       213 Y~leR~nLv~~FLLvd~sv~i--~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f  287 (320)
T KOG2486|consen  213 YLLERENLVRVFLLVDASVPI--QPTDNPEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVF  287 (320)
T ss_pred             HHHhhhhhheeeeeeeccCCC--CCCChHHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhccccce
Confidence            43322   2344455655421  11111 1122222   46999999999995321110 0  0111111       111


Q ss_pred             HhCCcEEEEcCCCCCCHHHHHHHHHHH
Q 028686          138 EYGIKFFETSAKTNLNVEQVFFSIARD  164 (205)
Q Consensus       138 ~~~~~~~~~Sa~~~~gi~~~~~~i~~~  164 (205)
                      ....+.+.+|+.++.|++.++-.+.+.
T Consensus       288 ~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~  314 (320)
T KOG2486|consen  288 LVDLPWIYVSSVTSLGRDLLLLHIAQL  314 (320)
T ss_pred             eccCCceeeecccccCceeeeeehhhh
Confidence            223567789999999999988777654

>cd01859 MJ1464 MJ1464

Probab=98.59  E-value=2e-07  Score=66.84  Aligned_cols=55  Identities=18%  Similarity=0.116  Sum_probs=38.3

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCC
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG   61 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g   61 (205)
                      ..+++++|.+++|||||+|+|.+... ..+.++.+.+.....+..+.   .+.+|||||
T Consensus       101 ~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859         101 EGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            46889999999999999999997653 33344555333323333332   589999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.58  E-value=4.4e-07  Score=68.96  Aligned_cols=120  Identities=17%  Similarity=0.204  Sum_probs=77.1

Q ss_pred             EEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChh----------HHHHHHHHHHHHHhhc-CCCCcEEEEEeCCC
Q 028686           51 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES----------SFNNIRNWIRNIEQHA-SDNVNKVLVGNKAD  119 (205)
Q Consensus        51 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~-~~~~piiiv~nK~D  119 (205)
                      .+.++++|.+|+.+-+.-|...+.+..++|||++.+...          .+.+...++..+.... -..+.+|+.+||.|
T Consensus       201 kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqD  280 (379)
T KOG0099|consen  201 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQD  280 (379)
T ss_pred             ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHH
Confidence            367999999999998999999999999999999876411          1222223333333322 14578999999999


Q ss_pred             CCCC---------------------------CCccCHHH--HHHHHH-H-------h--C---CcEEEEcCCCCCCHHHH
Q 028686          120 MDES---------------------------KRAVPTSK--GQALAD-E-------Y--G---IKFFETSAKTNLNVEQV  157 (205)
Q Consensus       120 l~~~---------------------------~~~~~~~~--~~~~~~-~-------~--~---~~~~~~Sa~~~~gi~~~  157 (205)
                      +...                           +....+.-  ++-+.. +       .  |   +.++++.|.+-++|..+
T Consensus       281 llaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrrV  360 (379)
T KOG0099|consen  281 LLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV  360 (379)
T ss_pred             HHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHHH
Confidence            7321                           00011111  111111 0       0  1   44567889999999999


Q ss_pred             HHHHHHHHHHHhc
Q 028686          158 FFSIARDIKQRLA  170 (205)
Q Consensus       158 ~~~i~~~~~~~~~  170 (205)
                      |+.....+....-
T Consensus       361 FnDcrdiIqr~hl  373 (379)
T KOG0099|consen  361 FNDCRDIIQRMHL  373 (379)
T ss_pred             HHHHHHHHHHHHH
Confidence            9998888876543

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.58  E-value=5.8e-07  Score=71.77  Aligned_cols=156  Identities=20%  Similarity=0.155  Sum_probs=94.6

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCC--------------cccceeeEEEEEEEEECCE------------------
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTS--------------FITTIGIDFKIRTIELDGK------------------   50 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~------------------   50 (205)
                      .+.|.+.|.-..|||||+-.|..+..+..              .......+.....+-+++.                  
T Consensus       117 hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~vv  196 (527)
T COG5258         117 HVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAVV  196 (527)
T ss_pred             eEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHhh
Confidence            37889999999999999988876654321              1111111222222222211                  


Q ss_pred             ---EEEEEEEeCCChhhhh--hhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC
Q 028686           51 ---RIKLQIWDTAGQERFR--TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR  125 (205)
Q Consensus        51 ---~~~~~i~D~~g~~~~~--~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~  125 (205)
                         +--+.+.|+.|++.|-  .+...+-.+.|..++++.+++.-+-  +..  +.+-....-+.|++++.+|+|+.++++
T Consensus       197 ~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~--~tk--EHLgi~~a~~lPviVvvTK~D~~~ddr  272 (527)
T COG5258         197 KRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTK--MTK--EHLGIALAMELPVIVVVTKIDMVPDDR  272 (527)
T ss_pred             hhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcch--hhh--HhhhhhhhhcCCEEEEEEecccCcHHH
Confidence               2347899999999865  3344555679999999999885432  111  222222224699999999999965322


Q ss_pred             -ccCHHHHHHHHH----------------------HhC---CcEEEEcCCCCCCHHHHHHHHH
Q 028686          126 -AVPTSKGQALAD----------------------EYG---IKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus       126 -~~~~~~~~~~~~----------------------~~~---~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                       +-..+++..+.+                      +.+   +|+|.+|+.+|+|++-+.+.+.
T Consensus       273 ~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~  335 (527)
T COG5258         273 FQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL  335 (527)
T ss_pred             HHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence             111222222211                      112   6899999999999886655544

>cd01856 YlqF YlqF

Probab=98.57  E-value=4e-07  Score=66.31  Aligned_cols=100  Identities=19%  Similarity=0.141  Sum_probs=64.7

Q ss_pred             CCChh-hhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH
Q 028686           59 TAGQE-RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD  137 (205)
Q Consensus        59 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~  137 (205)
                      .||+- +........+.++|++++|+|+.++....+. .+...+     .+.|+++|+||+|+.+. ..  .....++.+
T Consensus         2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~-----~~k~~ilVlNK~Dl~~~-~~--~~~~~~~~~   72 (171)
T cd01856           2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL-----GNKPRIIVLNKADLADP-KK--TKKWLKYFE   72 (171)
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh-----cCCCEEEEEehhhcCCh-HH--HHHHHHHHH
Confidence            35542 3444556778899999999999876432221 112221     24799999999998531 11  111112223


Q ss_pred             HhCCcEEEEcCCCCCCHHHHHHHHHHHHHH
Q 028686          138 EYGIKFFETSAKTNLNVEQVFFSIARDIKQ  167 (205)
Q Consensus       138 ~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~  167 (205)
                      ..+..++.+||+++.|++++.+.+...+..
T Consensus        73 ~~~~~vi~iSa~~~~gi~~L~~~l~~~l~~  102 (171)
T cd01856          73 SKGEKVLFVNAKSGKGVKKLLKAAKKLLKD  102 (171)
T ss_pred             hcCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence            334568899999999999999999887643

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01856 YlqF YlqF

Probab=98.57  E-value=2e-07  Score=67.95  Aligned_cols=55  Identities=22%  Similarity=0.264  Sum_probs=37.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCCh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   62 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~   62 (205)
                      ++++++|.+|+|||||+|+|.+..+.. ..+..+.+.....+.++   ..+.+|||||.
T Consensus       116 ~~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         116 IRAMVVGIPNVGKSTLINRLRGKKVAK-VGNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            689999999999999999999876531 12222222333334443   34789999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.54  E-value=2.4e-07  Score=73.66  Aligned_cols=152  Identities=16%  Similarity=0.169  Sum_probs=90.3

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCC-----------------------cccceeeEEEEEEEEECC----------
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTS-----------------------FITTIGIDFKIRTIELDG----------   49 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~-----------------------~~~t~~~~~~~~~~~~~~----------   49 (205)
                      -+|++++|...+|||||+-.|..+..+..                       ...+.|.+...+.+++..          
T Consensus       167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~  246 (591)
T KOG1143|consen  167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK  246 (591)
T ss_pred             EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence            47999999999999999988865543221                       111222222222233211          


Q ss_pred             EEEEEEEEeCCChhhhhhhhhhhc--cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC---
Q 028686           50 KRIKLQIWDTAGQERFRTITTAYY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK---  124 (205)
Q Consensus        50 ~~~~~~i~D~~g~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~---  124 (205)
                      ..--+.++|.+|+.+|......-+  ...|.+++|++++..-.... +..+-.+..   .++|++++.+|+|+.+..   
T Consensus       247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~A---L~iPfFvlvtK~Dl~~~~~~~  322 (591)
T KOG1143|consen  247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAA---LNIPFFVLVTKMDLVDRQGLK  322 (591)
T ss_pred             hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHH---hCCCeEEEEEeeccccchhHH
Confidence            123488999999998865432222  24677888888876543321 122233322   469999999999986521   


Q ss_pred             -------------------Cc-cCHHHHHHHHHH----hCCcEEEEcCCCCCCHHHHH
Q 028686          125 -------------------RA-VPTSKGQALADE----YGIKFFETSAKTNLNVEQVF  158 (205)
Q Consensus       125 -------------------~~-~~~~~~~~~~~~----~~~~~~~~Sa~~~~gi~~~~  158 (205)
                                         .. -...++-..+++    +-+|+|-+|+.+|+|++-+-
T Consensus       323 ~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~  380 (591)
T KOG1143|consen  323 KTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLR  380 (591)
T ss_pred             HHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHH
Confidence                               00 112223222322    23689999999999987443

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.53  E-value=1.2e-05  Score=56.92  Aligned_cols=147  Identities=18%  Similarity=0.212  Sum_probs=81.8

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCC-Chh-----------------
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTA-GQE-----------------   63 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~-g~~-----------------   63 (205)
                      +.+||.+.|+||+||||++.++.+.--... ....  .++...+.-+++.+-|.+.|+. |..                 
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g-~kvg--Gf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~   80 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG-YKVG--GFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG   80 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcC-ceee--eEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence            568999999999999999999875321111 1222  3666677777888888888877 310                 


Q ss_pred             ----hhh----hhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHH
Q 028686           64 ----RFR----TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQAL  135 (205)
Q Consensus        64 ----~~~----~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~  135 (205)
                          .+.    .-.+..+..||+  +++|---+-.+ ....+.+.+......+.|++.++.+.+-    .    .-++++
T Consensus        81 V~v~~le~i~~~al~rA~~~aDv--IIIDEIGpMEl-ks~~f~~~ve~vl~~~kpliatlHrrsr----~----P~v~~i  149 (179)
T COG1618          81 VNVEGLEEIAIPALRRALEEADV--IIIDEIGPMEL-KSKKFREAVEEVLKSGKPLIATLHRRSR----H----PLVQRI  149 (179)
T ss_pred             eeHHHHHHHhHHHHHHHhhcCCE--EEEecccchhh-ccHHHHHHHHHHhcCCCcEEEEEecccC----C----hHHHHh
Confidence                011    112333445674  44454333211 1123444444444456888888877642    1    112222


Q ss_pred             HHHhCCcEEEEcCCCCCCHHHHHHHHHHHHH
Q 028686          136 ADEYGIKFFETSAKTNLNVEQVFFSIARDIK  166 (205)
Q Consensus       136 ~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~  166 (205)
                      ....++.+|    .+.+|=+.+++.++..+.
T Consensus       150 k~~~~v~v~----lt~~NR~~i~~~Il~~L~  176 (179)
T COG1618         150 KKLGGVYVF----LTPENRNRILNEILSVLK  176 (179)
T ss_pred             hhcCCEEEE----EccchhhHHHHHHHHHhc
Confidence            233333333    445555578887777654

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.51  E-value=7.5e-07  Score=69.90  Aligned_cols=102  Identities=23%  Similarity=0.175  Sum_probs=66.3

Q ss_pred             CCChh-hhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH
Q 028686           59 TAGQE-RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD  137 (205)
Q Consensus        59 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~  137 (205)
                      .|||= +........+..+|++++|+|+..+.+.+.. .+.+.+     .+.|+++|+||+|+.+.  .. .+...++..
T Consensus         4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~-~i~~~l-----~~kp~IiVlNK~DL~~~--~~-~~~~~~~~~   74 (276)
T TIGR03596         4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNP-MIDEIR-----GNKPRLIVLNKADLADP--AV-TKQWLKYFE   74 (276)
T ss_pred             ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCCh-hHHHHH-----CCCCEEEEEEccccCCH--HH-HHHHHHHHH
Confidence            35553 3334456678899999999999876443221 111222     25799999999998531  10 111111223


Q ss_pred             HhCCcEEEEcCCCCCCHHHHHHHHHHHHHHHh
Q 028686          138 EYGIKFFETSAKTNLNVEQVFFSIARDIKQRL  169 (205)
Q Consensus       138 ~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  169 (205)
                      ..+.+++.+||+++.|++++.+.+.+.+.+..
T Consensus        75 ~~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~~  106 (276)
T TIGR03596        75 EKGIKALAINAKKGKGVKKIIKAAKKLLKEKN  106 (276)
T ss_pred             HcCCeEEEEECCCcccHHHHHHHHHHHHHHhh
Confidence            34567899999999999999999888875543

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.49  E-value=5.2e-07  Score=71.16  Aligned_cols=56  Identities=25%  Similarity=0.280  Sum_probs=39.4

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCC-CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   63 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~   63 (205)
                      .++++++|.||+|||||+|+|.+... .....|  |.+.....+.++.   .+.++||||..
T Consensus       121 ~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~--g~T~~~~~~~~~~---~~~l~DtPGi~  177 (287)
T PRK09563        121 AIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRP--GVTKAQQWIKLGK---GLELLDTPGIL  177 (287)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCccccCCCC--CeEEEEEEEEeCC---cEEEEECCCcC
Confidence            47899999999999999999998764 223333  3333333444443   47899999964

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.48  E-value=3.2e-07  Score=73.37  Aligned_cols=57  Identities=25%  Similarity=0.190  Sum_probs=41.2

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   63 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~   63 (205)
                      .++++|+|.||+|||||||+|.+... ....+..|.+.....+.++.   .+.++||||--
T Consensus       132 ~~~v~vvG~PNVGKSslIN~L~~k~~-~~~s~~PG~Tk~~q~i~~~~---~i~LlDtPGii  188 (322)
T COG1161         132 KIRVGVVGYPNVGKSTLINRLLGKKV-AKTSNRPGTTKGIQWIKLDD---GIYLLDTPGII  188 (322)
T ss_pred             ceEEEEEcCCCCcHHHHHHHHhcccc-eeeCCCCceecceEEEEcCC---CeEEecCCCcC
Confidence            37899999999999999999999875 22223335444444555543   37899999954

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.48  E-value=4.5e-07  Score=71.12  Aligned_cols=55  Identities=24%  Similarity=0.275  Sum_probs=38.5

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCCh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   62 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~   62 (205)
                      .++++++|.||+|||||+|+|.+.... ....|  |.+.....+.++.   .+.++||||.
T Consensus       118 ~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~--g~T~~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       118 PIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRP--GVTKGQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCccccCCCC--CeecceEEEEeCC---CEEEEECCCc
Confidence            478999999999999999999987632 22222  3233334444432   4789999997

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.48  E-value=8.2e-07  Score=69.84  Aligned_cols=140  Identities=17%  Similarity=0.167  Sum_probs=85.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC----------CC------CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG----------SF------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT   67 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~----------~~------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~   67 (205)
                      ++|.-+|.-.-|||||..++..-          +|      +++...  |++.....+.+.-..-.+-=.|+||+.+|-.
T Consensus        55 vNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaR--GITIn~aHveYeTa~RhYaH~DCPGHADYIK  132 (449)
T KOG0460|consen   55 VNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKAR--GITINAAHVEYETAKRHYAHTDCPGHADYIK  132 (449)
T ss_pred             ccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhc--cceEeeeeeeeeccccccccCCCCchHHHHH
Confidence            67888999999999998887431          11      112222  2333333333332223455569999999987


Q ss_pred             hhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCC-cEEEEEeCCCCCCCCC--ccCHHHHHHHHHHhC----
Q 028686           68 ITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNV-NKVLVGNKADMDESKR--AVPTSKGQALADEYG----  140 (205)
Q Consensus        68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-piiiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~----  140 (205)
                      +...-....|++|+|++.+|.. ..+.+   +.+.-...-++ .+++.+||.|+.++..  +..+-+++++..++|    
T Consensus       133 NMItGaaqMDGaILVVaatDG~-MPQTr---EHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd  208 (449)
T KOG0460|consen  133 NMITGAAQMDGAILVVAATDGP-MPQTR---EHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGD  208 (449)
T ss_pred             HhhcCccccCceEEEEEcCCCC-CcchH---HHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence            6666667899999999999842 11122   22221111234 4566689999975332  233455677888776    


Q ss_pred             -CcEEEEcCC
Q 028686          141 -IKFFETSAK  149 (205)
Q Consensus       141 -~~~~~~Sa~  149 (205)
                       .|++.-||+
T Consensus       209 ~~PvI~GSAL  218 (449)
T KOG0460|consen  209 NTPVIRGSAL  218 (449)
T ss_pred             CCCeeecchh
Confidence             678877753

>TIGR00092 GTP-binding protein YchF

Probab=98.47  E-value=6.4e-07  Score=72.27  Aligned_cols=84  Identities=17%  Similarity=-0.047  Sum_probs=54.5

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCC-CCCcccceeeEEEEEEEEECCE---------------EEEEEEEeCCChhh--
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGK---------------RIKLQIWDTAGQER--   64 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~--   64 (205)
                      .+++.++|.|++|||||.+.|.+... .....|..+.+...-.+.+.+.               ...+.+.|.||-..  
T Consensus         2 ~lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA   81 (368)
T TIGR00092         2 GLSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA   81 (368)
T ss_pred             CceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence            37899999999999999999998876 4333332222222222233221               23578899999543  


Q ss_pred             --hhhh---hhhhccCCcEEEEEEeCC
Q 028686           65 --FRTI---TTAYYRGAMGILLVYDVT   86 (205)
Q Consensus        65 --~~~~---~~~~~~~~d~~i~v~d~~   86 (205)
                        -..+   .-..++++|++++|++..
T Consensus        82 s~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        82 SKGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             hcccCcchHHHHHHHhCCEEEEEEeCC
Confidence              1122   233567899999999974

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.46  E-value=4e-07  Score=68.01  Aligned_cols=120  Identities=18%  Similarity=0.205  Sum_probs=79.5

Q ss_pred             EEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChh----------HHHHHHHHHHHHHhhc-CCCCcEEEEEeCC
Q 028686           50 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES----------SFNNIRNWIRNIEQHA-SDNVNKVLVGNKA  118 (205)
Q Consensus        50 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~-~~~~piiiv~nK~  118 (205)
                      ..+.+.+.|.+|+..-+.-|.+.+.+...++|++.++..+          ..++-..++..|..+. ..+.++|+..||.
T Consensus       197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKk  276 (359)
T KOG0085|consen  197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK  276 (359)
T ss_pred             hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechh
Confidence            4466889999999888888999999999888887765432          2333333444444332 2578999999999


Q ss_pred             CCCCC---------------CCccCHHHHHHHHH----HhC------CcEEEEcCCCCCCHHHHHHHHHHHHHHHh
Q 028686          119 DMDES---------------KRAVPTSKGQALAD----EYG------IKFFETSAKTNLNVEQVFFSIARDIKQRL  169 (205)
Q Consensus       119 Dl~~~---------------~~~~~~~~~~~~~~----~~~------~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  169 (205)
                      |+.++               ..+.+.+.+++|..    ..+      +.-+.+.|.+.+||.-+|..+...+++.+
T Consensus       277 DlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~  352 (359)
T KOG0085|consen  277 DLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  352 (359)
T ss_pred             hhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhh
Confidence            98542               11122333333332    111      23445778888899999999888887754

>PRK13796 GTPase YqeH; Provisional

Probab=98.45  E-value=1.9e-06  Score=70.16  Aligned_cols=93  Identities=24%  Similarity=0.349  Sum_probs=62.9

Q ss_pred             hhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHH----HHHh
Q 028686           64 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQAL----ADEY  139 (205)
Q Consensus        64 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~----~~~~  139 (205)
                      ++.......-...+.+++|+|+.+..     ..|...+.+.. .+.|+++|+||+||.+  .....+.+..|    ++..
T Consensus        58 ~~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~-~~kpviLViNK~DLl~--~~~~~~~i~~~l~~~~k~~  129 (365)
T PRK13796         58 DFLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFV-GNNPVLLVGNKADLLP--KSVKKNKVKNWLRQEAKEL  129 (365)
T ss_pred             HHHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHHh-CCCCEEEEEEchhhCC--CccCHHHHHHHHHHHHHhc
Confidence            45555544443344889999998743     22445555443 3579999999999964  23334444444    4455


Q ss_pred             CC---cEEEEcCCCCCCHHHHHHHHHHH
Q 028686          140 GI---KFFETSAKTNLNVEQVFFSIARD  164 (205)
Q Consensus       140 ~~---~~~~~Sa~~~~gi~~~~~~i~~~  164 (205)
                      ++   .++.+||+++.|++++++.+.+.
T Consensus       130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        130 GLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            65   58999999999999999998664

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.43  E-value=1.3e-06  Score=68.87  Aligned_cols=125  Identities=22%  Similarity=0.206  Sum_probs=75.4

Q ss_pred             CCChh-hhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH
Q 028686           59 TAGQE-RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD  137 (205)
Q Consensus        59 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~  137 (205)
                      .|||= +........+..+|++++|+|+.++.+.+.  .++....    .+.|+++|+||+|+.+.  .. .+...++..
T Consensus         7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~--~~-~~~~~~~~~   77 (287)
T PRK09563          7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADP--EV-TKKWIEYFE   77 (287)
T ss_pred             cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCH--HH-HHHHHHHHH
Confidence            56653 233445667889999999999987654322  1112211    25899999999998531  10 112222223


Q ss_pred             HhCCcEEEEcCCCCCCHHHHHHHHHHHHHHHhcccC---CCCCCccccccCCCCCCCC
Q 028686          138 EYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTD---SRSEPSTIKINQPDQAGGV  192 (205)
Q Consensus       138 ~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  192 (205)
                      +.+.+++.+|++++.|++++.+.+.+.+.+......   .......+-+...+..++|
T Consensus        78 ~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKS  135 (287)
T PRK09563         78 EQGIKALAINAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKS  135 (287)
T ss_pred             HcCCeEEEEECCCcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHH
Confidence            445778999999999999999998887755432111   1122334445555555444

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.42  E-value=1e-06  Score=69.32  Aligned_cols=84  Identities=18%  Similarity=0.120  Sum_probs=60.4

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEEC---------------CEEEEEEEEeCCChhh---
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD---------------GKRIKLQIWDTAGQER---   64 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~---------------~~~~~~~i~D~~g~~~---   64 (205)
                      .+++.++|.|++|||||.|.|.+........|..+++.....+.+.               .....++++|++|...   
T Consensus        20 ~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs   99 (391)
T KOG1491|consen   20 NLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGAS   99 (391)
T ss_pred             cceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcc
Confidence            4689999999999999999999998777666766655544444331               1345789999998542   


Q ss_pred             -hhhhhhhh---ccCCcEEEEEEeCC
Q 028686           65 -FRTITTAY---YRGAMGILLVYDVT   86 (205)
Q Consensus        65 -~~~~~~~~---~~~~d~~i~v~d~~   86 (205)
                       -..+-..|   ++.+|+++.|+++.
T Consensus       100 ~G~GLGN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen  100 AGEGLGNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             cCcCchHHHHHhhhhccceeEEEEec
Confidence             33444444   56799999998863

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=1.1e-05  Score=68.87  Aligned_cols=92  Identities=15%  Similarity=0.229  Sum_probs=53.2

Q ss_pred             EEEEeCCChh---hhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHH
Q 028686           54 LQIWDTAGQE---RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS  130 (205)
Q Consensus        54 ~~i~D~~g~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~  130 (205)
                      +.++|.||-.   ...+-...+..++|++|+|.++-+..+..+- +++...   ...+..|.|+-||.|... +.+-..+
T Consensus       208 ivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-~Ff~~v---s~~KpniFIlnnkwDasa-se~ec~e  282 (749)
T KOG0448|consen  208 IVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-QFFHKV---SEEKPNIFILNNKWDASA-SEPECKE  282 (749)
T ss_pred             ceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-HHHHHh---hccCCcEEEEechhhhhc-ccHHHHH
Confidence            5677889853   3444456677789999999887665443332 233333   223345666778899754 2333344


Q ss_pred             HHHHHHHHhC--------CcEEEEcCCC
Q 028686          131 KGQALADEYG--------IKFFETSAKT  150 (205)
Q Consensus       131 ~~~~~~~~~~--------~~~~~~Sa~~  150 (205)
                      ++.+...++.        -.+|+|||+.
T Consensus       283 ~V~~Qi~eL~v~~~~eA~DrvfFVS~~e  310 (749)
T KOG0448|consen  283 DVLKQIHELSVVTEKEAADRVFFVSAKE  310 (749)
T ss_pred             HHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence            4444333332        3477888653

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.39  E-value=1.2e-06  Score=61.66  Aligned_cols=79  Identities=15%  Similarity=0.077  Sum_probs=51.7

Q ss_pred             hhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCC
Q 028686           70 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK  149 (205)
Q Consensus        70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  149 (205)
                      ...+..+|++++|+|+.++.+..+ ..+.+.+.... .+.|+++|+||+|+.+. .  ...+...+.+..+..++.+||.
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~~~-~~k~~iivlNK~DL~~~-~--~~~~~~~~~~~~~~~ii~iSa~   80 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFRP-PDLERYVKEVD-PRKKNILLLNKADLLTE-E--QRKAWAEYFKKEGIVVVFFSAL   80 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccCC-HHHHHHHHhcc-CCCcEEEEEechhcCCH-H--HHHHHHHHHHhcCCeEEEEEec
Confidence            346778999999999988765432 12223332222 46899999999998531 1  1223344455566789999999


Q ss_pred             CCCC
Q 028686          150 TNLN  153 (205)
Q Consensus       150 ~~~g  153 (205)
                      ++.+
T Consensus        81 ~~~~   84 (141)
T cd01857          81 KENA   84 (141)
T ss_pred             CCCc
Confidence            8764

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.39  E-value=3e-06  Score=67.52  Aligned_cols=113  Identities=18%  Similarity=0.208  Sum_probs=71.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCc---ccceeeEEEEEEEE------ECCE-------------------------
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTSF---ITTIGIDFKIRTIE------LDGK-------------------------   50 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~---~~t~~~~~~~~~~~------~~~~-------------------------   50 (205)
                      -|+++|.=..||||+++-|+...++...   .||+.  +......      ++|.                         
T Consensus        60 mill~GqyStGKTtfi~yLle~dypg~riGpEPTtd--~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~  137 (532)
T KOG1954|consen   60 MILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTD--RFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM  137 (532)
T ss_pred             eEEEEeccccchhHHHHHHHhCCCCccccCCCCCcc--eeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence            5899999999999999999999876432   22222  2211111      1111                         


Q ss_pred             --------EEEEEEEeCCCh-----------hhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcE
Q 028686           51 --------RIKLQIWDTAGQ-----------ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK  111 (205)
Q Consensus        51 --------~~~~~i~D~~g~-----------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi  111 (205)
                              --.+.++||||.           ..|....+=|..++|.+|++||..--+--.+..   +.|....++.-.+
T Consensus       138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~---~vi~aLkG~Edki  214 (532)
T KOG1954|consen  138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFK---RVIDALKGHEDKI  214 (532)
T ss_pred             HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHH---HHHHHhhCCccee
Confidence                    025889999993           134455566788999999999976432212222   2233334455678


Q ss_pred             EEEEeCCCCCC
Q 028686          112 VLVGNKADMDE  122 (205)
Q Consensus       112 iiv~nK~Dl~~  122 (205)
                      -||.||+|..+
T Consensus       215 RVVLNKADqVd  225 (532)
T KOG1954|consen  215 RVVLNKADQVD  225 (532)
T ss_pred             EEEeccccccC
Confidence            88999999865

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.36  E-value=6.3e-06  Score=62.67  Aligned_cols=84  Identities=21%  Similarity=0.104  Sum_probs=51.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC--CCCCC---cccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh------hhhhhh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG--SFTTS---FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR------TITTAY   72 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~--~~~~~---~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~   72 (205)
                      .-|.|+|++++|||+|+|+|.+.  .+...   ...|.|+-.....+.. +....+.++||+|.....      ......
T Consensus         8 ~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~~~~   86 (224)
T cd01851           8 AVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDARLFA   86 (224)
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhHHHH
Confidence            45889999999999999999998  55422   2233333222222211 234679999999965321      112222


Q ss_pred             ccC--CcEEEEEEeCCCh
Q 028686           73 YRG--AMGILLVYDVTDE   88 (205)
Q Consensus        73 ~~~--~d~~i~v~d~~~~   88 (205)
                      +..  ++++||..+....
T Consensus        87 l~~llss~~i~n~~~~~~  104 (224)
T cd01851          87 LATLLSSVLIYNSWETIL  104 (224)
T ss_pred             HHHHHhCEEEEeccCccc
Confidence            233  7878877766543

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.36  E-value=6e-06  Score=62.55  Aligned_cols=155  Identities=21%  Similarity=0.320  Sum_probs=95.8

Q ss_pred             EEEEECCCCC--cHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCE--EEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686            5 LRIYFERGGV--GKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK--RIKLQIWDTAGQERFRTITTAYYRGAMGIL   80 (205)
Q Consensus         5 ~i~v~G~~~~--GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   80 (205)
                      -++|+|-+|+  ||.+|+.+|....+.....+.....++.++++.+..  ++.+.+.-.-. +.+-.. .....-..+++
T Consensus         6 ~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicd-e~~lpn-~~~a~pl~a~v   83 (418)
T KOG4273|consen    6 CALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICD-EKFLPN-AEIAEPLQAFV   83 (418)
T ss_pred             eEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccc-hhccCC-cccccceeeEE
Confidence            3688999998  999999999988876665555555566555543221  12222222111 111111 11223467899


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCCC-----------------------------------
Q 028686           81 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKV-LVGNKADMDESK-----------------------------------  124 (205)
Q Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-iv~nK~Dl~~~~-----------------------------------  124 (205)
                      +|||++....+..+..|+..-....   .-|+ .++||.|.....                                   
T Consensus        84 mvfdlse~s~l~alqdwl~htdins---fdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegs  160 (418)
T KOG4273|consen   84 MVFDLSEKSGLDALQDWLPHTDINS---FDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGS  160 (418)
T ss_pred             EEEeccchhhhHHHHhhcccccccc---chhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccccccc
Confidence            9999999999999999988654332   2333 447888843210                                   


Q ss_pred             ------Cc--cCHHHHHHHHHHhCCcEEEEcCCC------------CCCHHHHHHHHHHH
Q 028686          125 ------RA--VPTSKGQALADEYGIKFFETSAKT------------NLNVEQVFFSIARD  164 (205)
Q Consensus       125 ------~~--~~~~~~~~~~~~~~~~~~~~Sa~~------------~~gi~~~~~~i~~~  164 (205)
                            ..  .....+.+|+.++++.+++.++.+            ..|++.+|..+...
T Consensus       161 sllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ah  220 (418)
T KOG4273|consen  161 SLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAH  220 (418)
T ss_pred             cccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhc
Confidence                  00  123345788899999999998843            24677777766544

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.35  E-value=8.5e-06  Score=67.07  Aligned_cols=122  Identities=17%  Similarity=0.202  Sum_probs=80.6

Q ss_pred             EEEEEE-CCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChh----------HHHHHHHHHHHHHhh-cCCCC
Q 028686           42 IRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES----------SFNNIRNWIRNIEQH-ASDNV  109 (205)
Q Consensus        42 ~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~-~~~~~  109 (205)
                      ...+.+ .+  ..+.++|++|+..-+.-|.+++.+++++|||+++++.+          .+.+...+++.+-.. ...+.
T Consensus       227 e~~f~~~~~--~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~  304 (389)
T PF00503_consen  227 EIDFNFSGS--RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNT  304 (389)
T ss_dssp             EEEEEE-TT--EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTS
T ss_pred             EEEEEeecc--cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccC
Confidence            334444 44  67899999999988899999999999999999986522          133333444444332 22579


Q ss_pred             cEEEEEeCCCCCC-----CC----------Cc--cCHHHHHHHHHH-h-----------CCcEEEEcCCCCCCHHHHHHH
Q 028686          110 NKVLVGNKADMDE-----SK----------RA--VPTSKGQALADE-Y-----------GIKFFETSAKTNLNVEQVFFS  160 (205)
Q Consensus       110 piiiv~nK~Dl~~-----~~----------~~--~~~~~~~~~~~~-~-----------~~~~~~~Sa~~~~gi~~~~~~  160 (205)
                      |++|++||.|+..     ..          ..  -..+.+..+... +           .+.++.++|.+..++..+|+.
T Consensus       305 ~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~  384 (389)
T PF00503_consen  305 PIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNA  384 (389)
T ss_dssp             EEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHH
T ss_pred             ceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHH
Confidence            9999999999521     11          11  234444444331 1           135668889988899999988


Q ss_pred             HHHHH
Q 028686          161 IARDI  165 (205)
Q Consensus       161 i~~~~  165 (205)
                      +.+.+
T Consensus       385 v~~~i  389 (389)
T PF00503_consen  385 VKDII  389 (389)
T ss_dssp             HHHHH
T ss_pred             hcCcC
Confidence            87653

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.33  E-value=3.2e-06  Score=60.80  Aligned_cols=63  Identities=13%  Similarity=0.134  Sum_probs=36.3

Q ss_pred             EEEEEEeCCChhhhhhhhhh--------hccCCcEEEEEEeCCChhHH-HHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028686           52 IKLQIWDTAGQERFRTITTA--------YYRGAMGILLVYDVTDESSF-NNIRNWIRNIEQHASDNVNKVLVGNKADM  120 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~piiiv~nK~Dl  120 (205)
                      ....++|++|..+...+...        ..-..+.++.++|..+-... .+...+.+++...   +   +|++||+|+
T Consensus        87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a---d---~ivlnk~dl  158 (158)
T cd03112          87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA---D---RILLNKTDL  158 (158)
T ss_pred             CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC---C---EEEEecccC
Confidence            45678899997543333222        22357889999997653321 1222233444332   1   778999986

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.33  E-value=4.3e-07  Score=70.47  Aligned_cols=172  Identities=19%  Similarity=0.177  Sum_probs=101.9

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCC---CCCCcccceeeEEEEE---EEEE--------------------------CC-
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGS---FTTSFITTIGIDFKIR---TIEL--------------------------DG-   49 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~---~~~~~~~t~~~~~~~~---~~~~--------------------------~~-   49 (205)
                      .++|.-+|....||||++.++.+-.   |..+....+.+-..+.   .+..                          .+ 
T Consensus        38 TiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g~  117 (466)
T KOG0466|consen   38 TINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPGC  117 (466)
T ss_pred             eeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCCC
Confidence            4889999999999999999886642   2111111111111000   0000                          00 


Q ss_pred             -----EEEEEEEEeCCChhhhh-hh-hhhhccCCcEEEEEEeCCC----hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 028686           50 -----KRIKLQIWDTAGQERFR-TI-TTAYYRGAMGILLVYDVTD----ESSFNNIRNWIRNIEQHASDNVNKVLVGNKA  118 (205)
Q Consensus        50 -----~~~~~~i~D~~g~~~~~-~~-~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~  118 (205)
                           ---.+.+.|+||++-.- .+ ..+.  -.|++++++..+.    +++-+++    ..+..+.  =..++++-||.
T Consensus       118 ~~~~klvRHVSfVDCPGHDiLMaTMLnGaA--vmDaalLlIA~NEsCPQPQTsEHL----aaveiM~--LkhiiilQNKi  189 (466)
T KOG0466|consen  118 EGKMKLVRHVSFVDCPGHDILMATMLNGAA--VMDAALLLIAGNESCPQPQTSEHL----AAVEIMK--LKHIIILQNKI  189 (466)
T ss_pred             CCceEEEEEEEeccCCchHHHHHHHhcchH--HhhhhhhhhhcCCCCCCCchhhHH----HHHHHhh--hceEEEEechh
Confidence                 01257899999998533 22 2222  3567777776655    4444443    3332222  25788899999


Q ss_pred             CCCCCCCc-cCHHHHHHHHHHh---CCcEEEEcCCCCCCHHHHHHHHHHHHHHHhcccCCCCCCcccccc
Q 028686          119 DMDESKRA-VPTSKGQALADEY---GIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKIN  184 (205)
Q Consensus       119 Dl~~~~~~-~~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  184 (205)
                      ||..++.. ...+++++|.+.-   +.|++.+||.-++||+-+.++|...+..-.  .+..+.|+=+-+.
T Consensus       190 Dli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPv--Rdf~s~prlIVIR  257 (466)
T KOG0466|consen  190 DLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPV--RDFTSPPRLIVIR  257 (466)
T ss_pred             hhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCc--cccCCCCcEEEEE
Confidence            99753221 2244556665533   479999999999999999999998875433  3344555544443

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.33  E-value=2.3e-07  Score=74.76  Aligned_cols=117  Identities=18%  Similarity=0.144  Sum_probs=85.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCC--------CCCCc--------ccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGS--------FTTSF--------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT   67 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~--------~~~~~--------~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~   67 (205)
                      -+|.++..-.+||||...+++...        ++...        ..--|++..+..++++++..++.++||||+.+|+-
T Consensus        38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l  117 (753)
T KOG0464|consen   38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL  117 (753)
T ss_pred             hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence            468899999999999999986531        11111        11124456666677777778899999999999998


Q ss_pred             hhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC
Q 028686           68 ITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK  124 (205)
Q Consensus        68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~  124 (205)
                      ..++.++-.|+++.|||.+..-.-..+..|.    +....++|-+..+||+|...++
T Consensus       118 everclrvldgavav~dasagve~qtltvwr----qadk~~ip~~~finkmdk~~an  170 (753)
T KOG0464|consen  118 EVERCLRVLDGAVAVFDASAGVEAQTLTVWR----QADKFKIPAHCFINKMDKLAAN  170 (753)
T ss_pred             EHHHHHHHhcCeEEEEeccCCcccceeeeeh----hccccCCchhhhhhhhhhhhhh
Confidence            8999999999999999998753333344443    3334679999999999975443

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.32  E-value=5.2e-06  Score=76.96  Aligned_cols=111  Identities=18%  Similarity=0.184  Sum_probs=67.8

Q ss_pred             EEECCCCCcHHHHHHHHHhCCCCCCc------ccceeeEEEEEEEEECCEEEEEEEEeCCChh--------hhhhhhhhh
Q 028686            7 IYFERGGVGKSCLLLRFSDGSFTTSF------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQE--------RFRTITTAY   72 (205)
Q Consensus         7 ~v~G~~~~GKtsli~~l~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~   72 (205)
                      +|+|++|+||||+++.- +..++-..      ....+.+. .+...+..   ...++|++|..        .....|..+
T Consensus       115 lviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~f  189 (1169)
T TIGR03348       115 LVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLGF  189 (1169)
T ss_pred             EEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecC---CEEEEcCCCccccCCCcccccHHHHHHH
Confidence            79999999999999876 33332110      11111111 12222222   34688999943        122335444


Q ss_pred             cc---------CCcEEEEEEeCCCh-----hH----HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686           73 YR---------GAMGILLVYDVTDE-----SS----FNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  122 (205)
Q Consensus        73 ~~---------~~d~~i~v~d~~~~-----~s----~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~  122 (205)
                      +.         -.+++|+++|+.+-     +.    -..++..++++....+-.+|+.|+++|+|+..
T Consensus       190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA  257 (1169)
T ss_pred             HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence            32         48999999998652     11    12445566666666667899999999999864

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.31  E-value=1.8e-06  Score=61.87  Aligned_cols=54  Identities=19%  Similarity=0.198  Sum_probs=35.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCC-CCCcccceeeEEEEEEEEECCEEEEEEEEeCCCh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   62 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~   62 (205)
                      .+++++|.+|+|||||+|.|.+... .....+..+....  .+.++   ..+.++||||.
T Consensus       101 ~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~--~~~~~---~~~~liDtPG~  155 (155)
T cd01849         101 ITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQ--EVKLD---NKIKLLDTPGI  155 (155)
T ss_pred             cEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceE--EEEec---CCEEEEECCCC
Confidence            6799999999999999999998653 2222222222222  22222   24789999983

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.28  E-value=2.6e-05  Score=63.55  Aligned_cols=152  Identities=18%  Similarity=0.275  Sum_probs=85.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCC-----------------CCCC----cccceeeEEEEE---EEEE-CCEEEEEEEEe
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGS-----------------FTTS----FITTIGIDFKIR---TIEL-DGKRIKLQIWD   58 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~-----------------~~~~----~~~t~~~~~~~~---~~~~-~~~~~~~~i~D   58 (205)
                      |=|.|+|+-.+|||||+.||...-                 .+.+    ..-|+.+-|.+.   .+.+ ++-.+++.++|
T Consensus        18 IYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLiD   97 (492)
T PF09547_consen   18 IYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLID   97 (492)
T ss_pred             eEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEEe
Confidence            447899999999999999996531                 1111    111112222221   2333 46678999999


Q ss_pred             CCCh--------h-----hh-hhhh---------------hhhccC--CcEEEEEEeCC--C--hhHHHHHHH-HHHHHH
Q 028686           59 TAGQ--------E-----RF-RTIT---------------TAYYRG--AMGILLVYDVT--D--ESSFNNIRN-WIRNIE  102 (205)
Q Consensus        59 ~~g~--------~-----~~-~~~~---------------~~~~~~--~d~~i~v~d~~--~--~~s~~~~~~-~~~~i~  102 (205)
                      |-|-        .     ++ ..-|               ...+..  .-++++.-|-+  +  ++.|..+.. ..+++.
T Consensus        98 CVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ELk  177 (492)
T PF09547_consen   98 CVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEELK  177 (492)
T ss_pred             ecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHHH
Confidence            9871        0     00 0001               111222  12444444433  2  556655543 444444


Q ss_pred             hhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCC--CCCCHHHHHHHH
Q 028686          103 QHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK--TNLNVEQVFFSI  161 (205)
Q Consensus       103 ~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~gi~~~~~~i  161 (205)
                      .   -+.|+++++|-.+=   ......+.+.++..+++++++.+++.  +..+|..++..+
T Consensus       178 ~---igKPFvillNs~~P---~s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~v  232 (492)
T PF09547_consen  178 E---IGKPFVILLNSTKP---YSEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEV  232 (492)
T ss_pred             H---hCCCEEEEEeCCCC---CCHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHH
Confidence            4   46899999998762   23345666777888999998888764  334455544443

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>PRK01889 GTPase RsgA; Reviewed

Probab=98.28  E-value=4.6e-06  Score=67.75  Aligned_cols=84  Identities=14%  Similarity=0.183  Sum_probs=58.3

Q ss_pred             hccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-HhCCcEEEEcCCC
Q 028686           72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD-EYGIKFFETSAKT  150 (205)
Q Consensus        72 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~  150 (205)
                      +..++|.+++|+++...-....+..++..+..   .++|.+||+||+||.+.    ..+....+.. ..+.+++.+|+++
T Consensus       109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~---~~i~piIVLNK~DL~~~----~~~~~~~~~~~~~g~~Vi~vSa~~  181 (356)
T PRK01889        109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWE---SGAEPVIVLTKADLCED----AEEKIAEVEALAPGVPVLAVSALD  181 (356)
T ss_pred             EEEeCCEEEEEEecCCCCChhHHHHHHHHHHH---cCCCEEEEEEChhcCCC----HHHHHHHHHHhCCCCcEEEEECCC
Confidence            35789999999999744344455555555544   46888999999999642    1112222222 3468999999999


Q ss_pred             CCCHHHHHHHHH
Q 028686          151 NLNVEQVFFSIA  162 (205)
Q Consensus       151 ~~gi~~~~~~i~  162 (205)
                      +.|++++..++.
T Consensus       182 g~gl~~L~~~L~  193 (356)
T PRK01889        182 GEGLDVLAAWLS  193 (356)
T ss_pred             CccHHHHHHHhh
Confidence            999999988874

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.28  E-value=4.3e-06  Score=71.91  Aligned_cols=109  Identities=22%  Similarity=0.249  Sum_probs=77.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCC--CC------------CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGS--FT------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT   69 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~--~~------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~   69 (205)
                      -+|+++..-..|||||+..|....  .+            .+...+-|++-.+..+..-.+++.+.++|+||+.+|.+..
T Consensus        10 rn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~sev   89 (887)
T KOG0467|consen   10 RNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEV   89 (887)
T ss_pred             eEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhhh
Confidence            478999999999999999986532  11            1112233333444444444456889999999999999999


Q ss_pred             hhhccCCcEEEEEEeCCCh---hHHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 028686           70 TAYYRGAMGILLVYDVTDE---SSFNNIRNWIRNIEQHASDNVNKVLVGNKAD  119 (205)
Q Consensus        70 ~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D  119 (205)
                      ....+-+|++++++|+...   ++..-+++       .-..+...++|+||+|
T Consensus        90 ssas~l~d~alvlvdvvegv~~qt~~vlrq-------~~~~~~~~~lvinkid  135 (887)
T KOG0467|consen   90 SSASRLSDGALVLVDVVEGVCSQTYAVLRQ-------AWIEGLKPILVINKID  135 (887)
T ss_pred             hhhhhhcCCcEEEEeeccccchhHHHHHHH-------HHHccCceEEEEehhh
Confidence            8888999999999999873   33333322       2124567799999999

>cd01855 YqeH YqeH

Probab=98.26  E-value=1.4e-06  Score=64.47  Aligned_cols=24  Identities=21%  Similarity=0.054  Sum_probs=21.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      .+++++|.+|+|||||+|.|.+..
T Consensus       128 ~~~~~~G~~nvGKStliN~l~~~~  151 (190)
T cd01855         128 GDVYVVGATNVGKSTLINALLKKD  151 (190)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHhc
Confidence            578999999999999999999854

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.24  E-value=7.8e-06  Score=65.29  Aligned_cols=96  Identities=22%  Similarity=0.179  Sum_probs=56.7

Q ss_pred             EEEEEEEeCCChhhhhhh----hhhh--------ccCCcEEEEEEeCCChh-HHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 028686           51 RIKLQIWDTAGQERFRTI----TTAY--------YRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNK  117 (205)
Q Consensus        51 ~~~~~i~D~~g~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piiiv~nK  117 (205)
                      .+.+.++||||.......    ...+        -...+..++|.|++... .+..+    ..+.+..   -+--+|.||
T Consensus       196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a----~~f~~~~---~~~giIlTK  268 (318)
T PRK10416        196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQA----KAFHEAV---GLTGIILTK  268 (318)
T ss_pred             CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHH----HHHHhhC---CCCEEEEEC
Confidence            356899999996432211    1111        12466788999998643 33322    2222211   244788999


Q ss_pred             CCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686          118 ADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  160 (205)
Q Consensus       118 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  160 (205)
                      .|... .    .-.+..++...++|+..++  +|++++++-..
T Consensus       269 lD~t~-~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~~  304 (318)
T PRK10416        269 LDGTA-K----GGVVFAIADELGIPIKFIG--VGEGIDDLQPF  304 (318)
T ss_pred             CCCCC-C----ccHHHHHHHHHCCCEEEEe--CCCChhhCccC
Confidence            99532 1    2344555667789988888  77888766443

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.23  E-value=1.5e-06  Score=62.24  Aligned_cols=23  Identities=26%  Similarity=0.429  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      .++++|.+|||||||+|.|....
T Consensus        37 ~~vl~G~SGvGKSSLiN~L~~~~   59 (161)
T PF03193_consen   37 TSVLLGQSGVGKSSLINALLPEA   59 (161)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc
Confidence            47899999999999999999874

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.21  E-value=2.2e-05  Score=65.94  Aligned_cols=133  Identities=15%  Similarity=0.137  Sum_probs=75.6

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      ++=++|+|+||+|||||++.|...-.........|    +.+ -+.++.-.+++..+|.  +...+. ...+-||.++++
T Consensus        69 PfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G----PiT-vvsgK~RRiTflEcp~--Dl~~mi-DvaKIaDLVlLl  140 (1077)
T COG5192          69 PFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG----PIT-VVSGKTRRITFLECPS--DLHQMI-DVAKIADLVLLL  140 (1077)
T ss_pred             CeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC----ceE-EeecceeEEEEEeChH--HHHHHH-hHHHhhheeEEE
Confidence            35678999999999999998876432111111111    112 2345666789999992  222222 234459999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCCCCccCHHHHHH------HHHH-hCCcEEEEcCC
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKV-LVGNKADMDESKRAVPTSKGQA------LADE-YGIKFFETSAK  149 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-iv~nK~Dl~~~~~~~~~~~~~~------~~~~-~~~~~~~~Sa~  149 (205)
                      +|.+-.=.++.+ .+++.+..   ++.|-+ -|+++.||...  ......+.+      |..- .|+.+|.+|-.
T Consensus       141 IdgnfGfEMETm-EFLnil~~---HGmPrvlgV~ThlDlfk~--~stLr~~KKrlkhRfWtEiyqGaKlFylsgV  209 (1077)
T COG5192         141 IDGNFGFEMETM-EFLNILIS---HGMPRVLGVVTHLDLFKN--PSTLRSIKKRLKHRFWTEIYQGAKLFYLSGV  209 (1077)
T ss_pred             eccccCceehHH-HHHHHHhh---cCCCceEEEEeecccccC--hHHHHHHHHHHhhhHHHHHcCCceEEEeccc
Confidence            998863222211 12343333   455554 56899998642  233333322      2221 25788888854

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.18  E-value=1.2e-05  Score=62.94  Aligned_cols=96  Identities=15%  Similarity=0.099  Sum_probs=57.4

Q ss_pred             EEEEEEEeCCChhhhhhhh----hh---hc-----cCCcEEEEEEeCCCh-hHHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 028686           51 RIKLQIWDTAGQERFRTIT----TA---YY-----RGAMGILLVYDVTDE-SSFNNIRNWIRNIEQHASDNVNKVLVGNK  117 (205)
Q Consensus        51 ~~~~~i~D~~g~~~~~~~~----~~---~~-----~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piiiv~nK  117 (205)
                      .+.+.++||+|........    ..   ..     ...|..++|+|++.. +.+..+    ..+.+..   -+.-+|.||
T Consensus       154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~----~~f~~~~---~~~g~IlTK  226 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA----KVFNEAV---GLTGIILTK  226 (272)
T ss_pred             CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH----HHHHhhC---CCCEEEEEc
Confidence            3578999999965322211    11   11     237889999999763 233332    2222222   245788999


Q ss_pred             CCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686          118 ADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  160 (205)
Q Consensus       118 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  160 (205)
                      .|...     ..-.+..+....+.|+..++  +|++++++-..
T Consensus       227 lDe~~-----~~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~~  262 (272)
T TIGR00064       227 LDGTA-----KGGIILSIAYELKLPIKFIG--VGEKIDDLAPF  262 (272)
T ss_pred             cCCCC-----CccHHHHHHHHHCcCEEEEe--CCCChHhCccC
Confidence            99633     12344555566788988887  77778766443

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.18  E-value=6e-06  Score=69.48  Aligned_cols=112  Identities=20%  Similarity=0.127  Sum_probs=72.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC-----CCCCcccc-----------eeeEEEEEEEEECCEEEEEEEEeCCChhhhhhh
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS-----FTTSFITT-----------IGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI   68 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~-----~~~~~~~t-----------~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   68 (205)
                      +|.+.-.-.+||||+-++.+...     +.+.....           -|+...+-...+.++++.+.++||||+.+|.-.
T Consensus        41 NIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~E  120 (721)
T KOG0465|consen   41 NIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTFE  120 (721)
T ss_pred             ccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEEE
Confidence            56677777899999999986542     11111111           111222222233445788999999999999888


Q ss_pred             hhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028686           69 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM  120 (205)
Q Consensus        69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl  120 (205)
                      .++.++-.|++++|++....-.-.....|.+. .+   -++|-+..+||+|-
T Consensus       121 VeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~-~r---y~vP~i~FiNKmDR  168 (721)
T KOG0465|consen  121 VERALRVLDGAVLVLDAVAGVESQTETVWRQM-KR---YNVPRICFINKMDR  168 (721)
T ss_pred             ehhhhhhccCeEEEEEcccceehhhHHHHHHH-Hh---cCCCeEEEEehhhh
Confidence            88899999999999987663211222233333 33   35899999999994

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=98.16  E-value=7.4e-06  Score=59.44  Aligned_cols=135  Identities=21%  Similarity=0.241  Sum_probs=70.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeC-CChh--------------------
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT-AGQE--------------------   63 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~-~g~~--------------------   63 (205)
                      +|++.|.||+|||||+++++..-- ....+..|  ++...+.-++..+-+.+.|. .|..                    
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~-~~~~~v~G--f~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~   77 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELK-KKGLPVGG--FYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD   77 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHH-HTCGGEEE--EEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhh-ccCCccce--EEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence            689999999999999999875321 11123333  55555555666666677666 3311                    


Q ss_pred             --hhhhhhhhhc----cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCC-CCCCCCCccCHHHHHHHH
Q 028686           64 --RFRTITTAYY----RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA-DMDESKRAVPTSKGQALA  136 (205)
Q Consensus        64 --~~~~~~~~~~----~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~-Dl~~~~~~~~~~~~~~~~  136 (205)
                        .+.......+    ..++  ++|+|---+-. .....|.+.+......+.|++.++-+. +.         ..++++.
T Consensus        78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mE-l~~~~F~~~v~~~l~s~~~vi~vv~~~~~~---------~~l~~i~  145 (168)
T PF03266_consen   78 LESFEEIGLPALRNALSSSD--LIVIDEIGKME-LKSPGFREAVEKLLDSNKPVIGVVHKRSDN---------PFLEEIK  145 (168)
T ss_dssp             HHHHHCCCCCCCHHHHHCCH--EEEE---STTC-CC-CHHHHHHHHHHCTTSEEEEE--SS--S---------CCHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCC--EEEEeccchhh-hcCHHHHHHHHHHHcCCCcEEEEEecCCCc---------HHHHHHH
Confidence              1111111112    3445  66766432110 011234555555555668888888776 32         2245555


Q ss_pred             HHhCCcEEEEcCCCCCCH
Q 028686          137 DEYGIKFFETSAKTNLNV  154 (205)
Q Consensus       137 ~~~~~~~~~~Sa~~~~gi  154 (205)
                      ...++.+++++..+...+
T Consensus       146 ~~~~~~i~~vt~~NRd~l  163 (168)
T PF03266_consen  146 RRPDVKIFEVTEENRDAL  163 (168)
T ss_dssp             TTTTSEEEE--TTTCCCH
T ss_pred             hCCCcEEEEeChhHHhhH
Confidence            666788888877766544

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.13  E-value=2e-05  Score=61.65  Aligned_cols=94  Identities=17%  Similarity=0.169  Sum_probs=65.9

Q ss_pred             hhhhhhccCCcEEEEEEeCCChh-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEE
Q 028686           67 TITTAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFE  145 (205)
Q Consensus        67 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  145 (205)
                      .+.+..+.+.|-.++|+++.+|+ +...+..++-....   .++..+|++||+||.++..... ++........|++.+.
T Consensus        71 ~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~-~~~~~~y~~~gy~v~~  146 (301)
T COG1162          71 VLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAV-KELLREYEDIGYPVLF  146 (301)
T ss_pred             ceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHH-HHHHHHHHhCCeeEEE
Confidence            34444455688888888888875 44445444444333   5688888999999976432221 4566677788999999


Q ss_pred             EcCCCCCCHHHHHHHHHHH
Q 028686          146 TSAKTNLNVEQVFFSIARD  164 (205)
Q Consensus       146 ~Sa~~~~gi~~~~~~i~~~  164 (205)
                      +|++++.+++++..++...
T Consensus       147 ~s~~~~~~~~~l~~~l~~~  165 (301)
T COG1162         147 VSAKNGDGLEELAELLAGK  165 (301)
T ss_pred             ecCcCcccHHHHHHHhcCC
Confidence            9999999999998886543

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.10  E-value=1.9e-05  Score=60.19  Aligned_cols=83  Identities=24%  Similarity=0.190  Sum_probs=52.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCC-CcccceeeEEEEEEEEECCEEEEEEEEeCCChhh-------hhhhhhhhccCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-------FRTITTAYYRGA   76 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~~   76 (205)
                      ++.++|.|.+||||++..+.+...+. .+..|. ....+-.+.+++  -++++.|.||.-+       .-....+..+.+
T Consensus        61 ~vg~vgFPSvGksTl~~~l~g~~s~vasyeftt-l~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc  137 (358)
T KOG1487|consen   61 RVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTT-LTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC  137 (358)
T ss_pred             eeeEEecCccchhhhhhhhcCCCCcccccccee-EEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence            78999999999999999998865322 222211 112222333444  4688999998532       112234456679


Q ss_pred             cEEEEEEeCCChhH
Q 028686           77 MGILLVYDVTDESS   90 (205)
Q Consensus        77 d~~i~v~d~~~~~s   90 (205)
                      +.+++|.|+.-|-+
T Consensus       138 nli~~vld~~kp~~  151 (358)
T KOG1487|consen  138 NLIFIVLDVLKPLS  151 (358)
T ss_pred             cEEEEEeeccCccc
Confidence            99999999866543

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.09  E-value=8.1e-06  Score=66.44  Aligned_cols=54  Identities=26%  Similarity=0.239  Sum_probs=35.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCC------CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChh
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSF------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   63 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~   63 (205)
                      +++++|.+|+|||||+|+|++...      .....|.++  .....+.+++   .+.++||||..
T Consensus       156 ~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT--~~~~~~~~~~---~~~l~DtPG~~  215 (360)
T TIGR03597       156 DVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTT--LDLIEIPLDD---GHSLYDTPGII  215 (360)
T ss_pred             eEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeE--eeEEEEEeCC---CCEEEECCCCC
Confidence            799999999999999999998532      122223222  2233344422   25799999965

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK13796 GTPase YqeH; Provisional

Probab=98.08  E-value=6.1e-06  Score=67.25  Aligned_cols=57  Identities=23%  Similarity=0.140  Sum_probs=35.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCC----CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSF----TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   63 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~   63 (205)
                      .+++++|.+|||||||+|+|+....    .....+..|.+.....+.+++.   ..++||||..
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~  221 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII  221 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence            3689999999999999999986431    1111122222233333444332   4789999974

>PRK12288 GTPase RsgA; Reviewed

Probab=98.06  E-value=7.8e-06  Score=66.04  Aligned_cols=58  Identities=21%  Similarity=0.301  Sum_probs=34.6

Q ss_pred             EEEECCCCCcHHHHHHHHHhCCCC-CCccc---ceeeE--EEEEEEEECCEEEEEEEEeCCChhhhh
Q 028686            6 RIYFERGGVGKSCLLLRFSDGSFT-TSFIT---TIGID--FKIRTIELDGKRIKLQIWDTAGQERFR   66 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~~~-~~~~~---t~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~~~   66 (205)
                      ++|+|.+|||||||+|+|++.... ....+   .-|.+  .....+.+++.   ..++||||...+.
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~  271 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG  271 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence            689999999999999999976421 11111   11111  11222333321   2589999987544

>PRK14974 cell division protein FtsY; Provisional

Probab=98.03  E-value=2.1e-05  Score=63.16  Aligned_cols=95  Identities=15%  Similarity=0.115  Sum_probs=56.1

Q ss_pred             EEEEEEeCCChhhhhh----hhhhhc--cCCcEEEEEEeCCChhH-HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC
Q 028686           52 IKLQIWDTAGQERFRT----ITTAYY--RGAMGILLVYDVTDESS-FNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK  124 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~  124 (205)
                      +.+.++||+|......    ....+.  .+.|..++|.|+...+. .+.+    ..+....   -+--+++||.|... .
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a----~~f~~~~---~~~giIlTKlD~~~-~  294 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA----REFNEAV---GIDGVILTKVDADA-K  294 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH----HHHHhcC---CCCEEEEeeecCCC-C
Confidence            4589999999653211    112221  25788899999876432 2222    2222211   23467899999743 1


Q ss_pred             CccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686          125 RAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  160 (205)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  160 (205)
                          .-.+..++...+.|+..++  +|++++++..+
T Consensus       295 ----~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~  324 (336)
T PRK14974        295 ----GGAALSIAYVIGKPILFLG--VGQGYDDLIPF  324 (336)
T ss_pred             ----ccHHHHHHHHHCcCEEEEe--CCCChhhcccC
Confidence                2233444556688888887  78888877544

>PRK13695 putative NTPase; Provisional

Probab=98.02  E-value=0.00015  Score=52.88  Aligned_cols=78  Identities=13%  Similarity=0.169  Sum_probs=43.7

Q ss_pred             hhccCCcEEEEEEeC---CChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEc
Q 028686           71 AYYRGAMGILLVYDV---TDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETS  147 (205)
Q Consensus        71 ~~~~~~d~~i~v~d~---~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S  147 (205)
                      ..+..+++  +++|-   .+..+    ..+.+.+......+.|++++.+|...        .....++....+..+++++
T Consensus        92 ~~l~~~~~--lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~~~--------~~~~~~i~~~~~~~i~~~~  157 (174)
T PRK13695         92 RALEEADV--IIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRRSV--------HPFVQEIKSRPGGRVYELT  157 (174)
T ss_pred             hccCCCCE--EEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECchhh--------HHHHHHHhccCCcEEEEEc
Confidence            34456665  67773   22211    22334444443456899999998532        1234445555566777774


Q ss_pred             CCCCCCHHHHHHHHHHHH
Q 028686          148 AKTNLNVEQVFFSIARDI  165 (205)
Q Consensus       148 a~~~~gi~~~~~~i~~~~  165 (205)
                         .+|=+++.+.+++.+
T Consensus       158 ---~~~r~~~~~~~~~~~  172 (174)
T PRK13695        158 ---PENRDSLPFEILNRL  172 (174)
T ss_pred             ---chhhhhHHHHHHHHH
Confidence               344457777777755

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=98.01  E-value=7.3e-05  Score=59.80  Aligned_cols=95  Identities=8%  Similarity=0.146  Sum_probs=50.3

Q ss_pred             EEEEEEeCCChhhhhhhhhhhcc--------CCcEEEEEEeCCChhHHH-HHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686           52 IKLQIWDTAGQERFRTITTAYYR--------GAMGILLVYDVTDESSFN-NIRNWIRNIEQHASDNVNKVLVGNKADMDE  122 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~-~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~  122 (205)
                      ....++++.|..+...+...+..        ..+.++.|+|+.+-.... +......++..   .+   +|++||.|+.+
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~---AD---~IvlnK~Dl~~  164 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY---AD---RILLTKTDVAG  164 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh---CC---EEEEeccccCC
Confidence            44677888887655544444321        257888999987532211 11111222322   22   88999999865


Q ss_pred             CCCccCHHHHHHHHHHhC--CcEEEEcCCCCCCHHHHH
Q 028686          123 SKRAVPTSKGQALADEYG--IKFFETSAKTNLNVEQVF  158 (205)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~~~  158 (205)
                      +     .+.+.+..+..+  ++++.++ ........+|
T Consensus       165 ~-----~~~~~~~l~~lnp~a~i~~~~-~~~v~~~~l~  196 (318)
T PRK11537        165 E-----AEKLRERLARINARAPVYTVV-HGDIDLSLLF  196 (318)
T ss_pred             H-----HHHHHHHHHHhCCCCEEEEec-cCCCCHHHHh
Confidence            2     144555555444  5665443 2223444444

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.00  E-value=0.00021  Score=60.03  Aligned_cols=81  Identities=20%  Similarity=0.294  Sum_probs=50.4

Q ss_pred             EEEEEeCCCh-------------hhhhhhhhhhccCCcEEEEEEe-CCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 028686           53 KLQIWDTAGQ-------------ERFRTITTAYYRGAMGILLVYD-VTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA  118 (205)
Q Consensus        53 ~~~i~D~~g~-------------~~~~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~  118 (205)
                      ...+.|.||-             +..-.+..++..+.+++|+|+- -+--..=..+.   ..+.+....+...|+|.+|.
T Consensus       413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVT---DLVsq~DP~GrRTIfVLTKV  489 (980)
T KOG0447|consen  413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVT---DLVSQMDPHGRRTIFVLTKV  489 (980)
T ss_pred             eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHH---HHHHhcCCCCCeeEEEEeec
Confidence            4778899983             1234556788899999999983 22111111222   23334444678899999999


Q ss_pred             CCCCCCCccCHHHHHHHHH
Q 028686          119 DMDESKRAVPTSKGQALAD  137 (205)
Q Consensus       119 Dl~~~~~~~~~~~~~~~~~  137 (205)
                      ||.+ .+-.++..++++..
T Consensus       490 DlAE-knlA~PdRI~kIle  507 (980)
T KOG0447|consen  490 DLAE-KNVASPSRIQQIIE  507 (980)
T ss_pred             chhh-hccCCHHHHHHHHh
Confidence            9975 33345566665544

>PRK12289 GTPase RsgA; Reviewed

Probab=98.00  E-value=1e-05  Score=65.43  Aligned_cols=22  Identities=32%  Similarity=0.416  Sum_probs=20.2

Q ss_pred             EEEECCCCCcHHHHHHHHHhCC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      ++|+|.+|+|||||+|.|++..
T Consensus       175 ~v~iG~SgVGKSSLIN~L~~~~  196 (352)
T PRK12289        175 TVVAGPSGVGKSSLINRLIPDV  196 (352)
T ss_pred             EEEEeCCCCCHHHHHHHHcCcc
Confidence            7999999999999999999764

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=97.99  E-value=1.3e-05  Score=61.78  Aligned_cols=23  Identities=26%  Similarity=0.524  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      .++++|.+|+|||||+|+|.+..
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~~  144 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPSV  144 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhh
Confidence            57899999999999999998764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.99  E-value=0.00045  Score=58.47  Aligned_cols=115  Identities=16%  Similarity=0.157  Sum_probs=61.9

Q ss_pred             EEEEEEEeCCChhhhhhh----hhhhc-cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC
Q 028686           51 RIKLQIWDTAGQERFRTI----TTAYY-RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR  125 (205)
Q Consensus        51 ~~~~~i~D~~g~~~~~~~----~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~  125 (205)
                      .+.+.|+||+|.......    ...+. ......++|++.+.  +..++...+..+..    ..+.-+|+||.|...   
T Consensus       428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~----~~~~gvILTKlDEt~---  498 (559)
T PRK12727        428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH----AKPQGVVLTKLDETG---  498 (559)
T ss_pred             cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh----hCCeEEEEecCcCcc---
Confidence            357899999996432211    00010 01224566667664  33334333333332    245678999999632   


Q ss_pred             ccCHHHHHHHHHHhCCcEEEEcCCCCCCH-HHHH----HHHHHHHHHHhcccCCCCCC
Q 028686          126 AVPTSKGQALADEYGIKFFETSAKTNLNV-EQVF----FSIARDIKQRLADTDSRSEP  178 (205)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi-~~~~----~~i~~~~~~~~~~~~~~~~~  178 (205)
                        ..-.+..+....+.++..++.  |..| +++.    ..+++.+....+..++-..+
T Consensus       499 --~lG~aLsv~~~~~LPI~yvt~--GQ~VPeDL~~A~~~~Lv~r~~~l~~~~~~~~~~  552 (559)
T PRK12727        499 --RFGSALSVVVDHQMPITWVTD--GQRVPDDLHRANAASLVLRLEDLRRAADKPCTP  552 (559)
T ss_pred             --chhHHHHHHHHhCCCEEEEeC--CCCchhhhhcCCHHHHHHHHHHHHhhccCCCCh
Confidence              235566666677777666653  3444 2322    23666777766666655433

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=97.88  E-value=1.6e-05  Score=65.77  Aligned_cols=55  Identities=15%  Similarity=0.081  Sum_probs=38.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCC-CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   63 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~   63 (205)
                      +.|.++|.|||||||+||.|.+.+. .....|.-+..|....+  .   -.+.+-||||..
T Consensus       315 vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~l--s---~~v~LCDCPGLV  370 (562)
T KOG1424|consen  315 VTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFL--S---PSVCLCDCPGLV  370 (562)
T ss_pred             eEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEc--C---CCceecCCCCcc
Confidence            7899999999999999999999984 23333433334443333  2   136778999954

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.85  E-value=8e-05  Score=56.06  Aligned_cols=61  Identities=25%  Similarity=0.224  Sum_probs=39.2

Q ss_pred             EEEEEeCC-ChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCC-CcEEEEEeCCCC
Q 028686           53 KLQIWDTA-GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN-VNKVLVGNKADM  120 (205)
Q Consensus        53 ~~~i~D~~-g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~piiiv~nK~Dl  120 (205)
                      .+.+.||- |.++|.   +...+++|.+|+|+|.+. .|+.......+....   .+ .++.+|+||.|-
T Consensus       135 e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~-~sl~taeri~~L~~e---lg~k~i~~V~NKv~e  197 (255)
T COG3640         135 EVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSY-KSLRTAERIKELAEE---LGIKRIFVVLNKVDE  197 (255)
T ss_pred             cEEEEecccchhhhc---cccccCCCEEEEEeCCcH-HHHHHHHHHHHHHHH---hCCceEEEEEeeccc
Confidence            46666763 444433   456778999999999885 355554333222222   23 789999999983

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=97.85  E-value=0.00047  Score=55.14  Aligned_cols=98  Identities=15%  Similarity=0.163  Sum_probs=53.9

Q ss_pred             EEEEEEeCCChhhhhhhhhhhcc--------CCcEEEEEEeCCChhHHHH-HHH-HHHHHHhhcCCCCcEEEEEeCCCCC
Q 028686           52 IKLQIWDTAGQERFRTITTAYYR--------GAMGILLVYDVTDESSFNN-IRN-WIRNIEQHASDNVNKVLVGNKADMD  121 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~-~~~-~~~~i~~~~~~~~piiiv~nK~Dl~  121 (205)
                      ....++++.|-.........+..        ..|+++-|+|+.+-..... +.. ...++..   .+   +|++||.|+.
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~---AD---~ivlNK~Dlv  158 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF---AD---VIVLNKTDLV  158 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh---Cc---EEEEecccCC
Confidence            44667788885544333322222        3677888988876332221 222 2233322   12   8999999997


Q ss_pred             CCCCccCHHHHHHHHHHhC--CcEEEEcCCCCCCHHHHHH
Q 028686          122 ESKRAVPTSKGQALADEYG--IKFFETSAKTNLNVEQVFF  159 (205)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~~~~  159 (205)
                      ++.   ..+..+......+  ++++.++. .+.+..+++.
T Consensus       159 ~~~---~l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll~  194 (323)
T COG0523         159 DAE---ELEALEARLRKLNPRARIIETSY-GDVDLAELLD  194 (323)
T ss_pred             CHH---HHHHHHHHHHHhCCCCeEEEccc-cCCCHHHhhc
Confidence            643   1455555565555  67777766 3334444443

>cd01854 YjeQ_engC YjeQ/EngC

Probab=97.84  E-value=4e-05  Score=60.47  Aligned_cols=58  Identities=24%  Similarity=0.259  Sum_probs=35.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCC-cccc---ee--eEEEEEEEEECCEEEEEEEEeCCChhhh
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTS-FITT---IG--IDFKIRTIELDGKRIKLQIWDTAGQERF   65 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~-~~~t---~~--~~~~~~~~~~~~~~~~~~i~D~~g~~~~   65 (205)
                      .++++|.+|+|||||+|.|.+...... ..+.   .|  .+.....+.+.+.   ..++|+||...+
T Consensus       163 ~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~  226 (287)
T cd01854         163 TSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF  226 (287)
T ss_pred             eEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence            589999999999999999987643211 1110   11  1122223333321   258999998654

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.84  E-value=2.9e-05  Score=60.72  Aligned_cols=21  Identities=29%  Similarity=0.463  Sum_probs=19.0

Q ss_pred             EEEECCCCCcHHHHHHHHHhC
Q 028686            6 RIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .+++|.+|+|||||+|+|...
T Consensus       167 svl~GqSGVGKSSLiN~L~p~  187 (301)
T COG1162         167 TVLLGQSGVGKSTLINALLPE  187 (301)
T ss_pred             EEEECCCCCcHHHHHHhhCch
Confidence            578999999999999999864

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=97.84  E-value=0.00011  Score=58.90  Aligned_cols=25  Identities=24%  Similarity=0.158  Sum_probs=21.2

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhC
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      +.+||+++|...+|||||+-.|..+
T Consensus       132 ~E~RVAVVGNVDAGKSTLLGVLTHg  156 (641)
T KOG0463|consen  132 IEARVAVVGNVDAGKSTLLGVLTHG  156 (641)
T ss_pred             eeEEEEEEecccCCcceeEeeeeec
Confidence            4589999999999999998776554

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.82  E-value=0.00015  Score=55.93  Aligned_cols=114  Identities=21%  Similarity=0.294  Sum_probs=69.3

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCC----cccceeeEEEEEEEEECCEEEEEEEEeCCChhh-------hhh---
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTS----FITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-------FRT---   67 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~---   67 (205)
                      +.|+|+.+|..|.|||||+..|.+-++...    ..|+.......+.+.-.+..+++.+.||.|..+       |..   
T Consensus        41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd  120 (406)
T KOG3859|consen   41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD  120 (406)
T ss_pred             ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence            458999999999999999999999886543    233444333333333356678899999998311       111   


Q ss_pred             ----hhhhhc---------------cCCcEEEEEEeCCChhHHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCC
Q 028686           68 ----ITTAYY---------------RGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM  120 (205)
Q Consensus        68 ----~~~~~~---------------~~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piiiv~nK~Dl  120 (205)
                          ..+.|+               ...++++|.+..+. .++..+.. .+..+.    ..+-||-++-|+|.
T Consensus       121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~Ld----skVNIIPvIAKaDt  188 (406)
T KOG3859|consen  121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKLD----SKVNIIPVIAKADT  188 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHHh----hhhhhHHHHHHhhh
Confidence                111111               24667888877774 35544432 223333    23555656678775

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.82  E-value=8.7e-05  Score=43.21  Aligned_cols=45  Identities=24%  Similarity=0.279  Sum_probs=30.8

Q ss_pred             cCCcEEEEEEeCCChh--HHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 028686           74 RGAMGILLVYDVTDES--SFNNIRNWIRNIEQHASDNVNKVLVGNKAD  119 (205)
Q Consensus        74 ~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piiiv~nK~D  119 (205)
                      .-.++++|++|++...  +.++-..+++.++... .+.|+++|.||+|
T Consensus        12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F-~~~P~i~V~nK~D   58 (58)
T PF06858_consen   12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF-PNKPVIVVLNKID   58 (58)
T ss_dssp             GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT-TTS-EEEEE--TT
T ss_pred             hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc-CCCCEEEEEeccC
Confidence            3478999999999754  5666667888888877 4799999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=97.80  E-value=5.1e-05  Score=55.61  Aligned_cols=81  Identities=21%  Similarity=0.198  Sum_probs=41.6

Q ss_pred             EEEEEEeCCChhhhhhh------hhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC
Q 028686           52 IKLQIWDTAGQERFRTI------TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR  125 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~~------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~  125 (205)
                      ....++.+.|......+      ... .-..+.+|.|+|+.+-.....+...+..-...+  +   +|++||.|+.+.. 
T Consensus        85 ~d~IiIE~sG~a~p~~l~~~~~~~~~-~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A--D---vIvlnK~D~~~~~-  157 (178)
T PF02492_consen   85 PDRIIIETSGLADPAPLILQDPPLKE-DFRLDSIITVVDATNFDELENIPELLREQIAFA--D---VIVLNKIDLVSDE-  157 (178)
T ss_dssp             -SEEEEEEECSSGGGGHHHHSHHHHH-HESESEEEEEEEGTTHGGHTTHCHHHHHHHCT---S---EEEEE-GGGHHHH-
T ss_pred             cCEEEECCccccccchhhhccccccc-cccccceeEEeccccccccccchhhhhhcchhc--C---EEEEeccccCChh-
Confidence            45677788886554443      111 124678899999976433333333222222222  2   8899999986532 


Q ss_pred             ccCHHHHHHHHHHhC
Q 028686          126 AVPTSKGQALADEYG  140 (205)
Q Consensus       126 ~~~~~~~~~~~~~~~  140 (205)
                       ...+..+++.++.+
T Consensus       158 -~~i~~~~~~ir~ln  171 (178)
T PF02492_consen  158 -QKIERVREMIRELN  171 (178)
T ss_dssp             ---HHHHHHHHHHH-
T ss_pred             -hHHHHHHHHHHHHC
Confidence             12244455554443

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.77  E-value=0.0005  Score=56.01  Aligned_cols=138  Identities=13%  Similarity=0.108  Sum_probs=70.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCC---CCCcccceeeEEE------------------EEEEEE---------CCEEEEE
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSF---TTSFITTIGIDFK------------------IRTIEL---------DGKRIKL   54 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~---~~~~~~t~~~~~~------------------~~~~~~---------~~~~~~~   54 (205)
                      .++|+|++|+||||++..|...-.   ..........+.+                  ...+.-         .-....+
T Consensus       139 ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~Dl  218 (374)
T PRK14722        139 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKHM  218 (374)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCCE
Confidence            578999999999999999865311   0000000111111                  000000         0023468


Q ss_pred             EEEeCCChhhhhhh----hhhh--ccCCcEEEEEEeCCC-hhHHHHHHHHHHHHHhhcCCC--CcEEEEEeCCCCCCCCC
Q 028686           55 QIWDTAGQERFRTI----TTAY--YRGAMGILLVYDVTD-ESSFNNIRNWIRNIEQHASDN--VNKVLVGNKADMDESKR  125 (205)
Q Consensus        55 ~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~--~piiiv~nK~Dl~~~~~  125 (205)
                      .++||+|....+..    ...+  .....-.++|++.+. .+...++..-+..........  -+--+|++|.|-..   
T Consensus       219 VLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~---  295 (374)
T PRK14722        219 VLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS---  295 (374)
T ss_pred             EEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC---
Confidence            89999996633221    1111  112344578888876 444444433333332111000  12357789999532   


Q ss_pred             ccCHHHHHHHHHHhCCcEEEEc
Q 028686          126 AVPTSKGQALADEYGIKFFETS  147 (205)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~S  147 (205)
                        ..-.+..+....+.|+..++
T Consensus       296 --~~G~~l~~~~~~~lPi~yvt  315 (374)
T PRK14722        296 --NLGGVLDTVIRYKLPVHYVS  315 (374)
T ss_pred             --CccHHHHHHHHHCcCeEEEe
Confidence              23445566667777766554

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=97.75  E-value=0.00012  Score=60.53  Aligned_cols=64  Identities=14%  Similarity=0.096  Sum_probs=36.4

Q ss_pred             EEEEEEEeCCChhhhhhh----hhhh--ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028686           51 RIKLQIWDTAGQERFRTI----TTAY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM  120 (205)
Q Consensus        51 ~~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl  120 (205)
                      .+.+.|+||+|.......    ...+  ....+.+++|.|+.-.+.-.+.   ...+....   -+--+|+||.|.
T Consensus       182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~---a~~F~~~~---~~~g~IlTKlD~  251 (429)
T TIGR01425       182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ---AKAFKDSV---DVGSVIITKLDG  251 (429)
T ss_pred             CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH---HHHHHhcc---CCcEEEEECccC
Confidence            357899999996533211    1111  2246788999998765332222   22232211   355678899985

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK00098 GTPase RsgA; Reviewed

Probab=97.73  E-value=6.7e-05  Score=59.55  Aligned_cols=23  Identities=30%  Similarity=0.433  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      .++++|.+|+|||||+|.|.+..
T Consensus       166 ~~~~~G~sgvGKStlin~l~~~~  188 (298)
T PRK00098        166 VTVLAGQSGVGKSTLLNALAPDL  188 (298)
T ss_pred             eEEEECCCCCCHHHHHHHHhCCc
Confidence            47899999999999999998764

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=97.73  E-value=5.3e-05  Score=56.10  Aligned_cols=114  Identities=15%  Similarity=0.195  Sum_probs=62.9

Q ss_pred             EEEEEeCCChhhhh---hhhhhhccC------CcEEEEEEeCCC-hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686           53 KLQIWDTAGQERFR---TITTAYYRG------AMGILLVYDVTD-ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  122 (205)
Q Consensus        53 ~~~i~D~~g~~~~~---~~~~~~~~~------~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~  122 (205)
                      .+.++|+||+-...   ...+.+++.      --..+++.|..- -++...+...+..+.......+|-|=|.+|+||..
T Consensus        99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk  178 (273)
T KOG1534|consen   99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK  178 (273)
T ss_pred             CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence            57899999985421   222222221      113455555432 23333444444444444445789999999999854


Q ss_pred             CCCccCHHHHHHH-------------------------------HHHhC-CcEEEEcCCCCCCHHHHHHHHHHHHHHHh
Q 028686          123 SKRAVPTSKGQAL-------------------------------ADEYG-IKFFETSAKTNLNVEQVFFSIARDIKQRL  169 (205)
Q Consensus       123 ~~~~~~~~~~~~~-------------------------------~~~~~-~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  169 (205)
                      .   ...+++++|                               ...++ +.+++....+.+.|+.++..|-.++.-..
T Consensus       179 ~---~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQy~E  254 (273)
T KOG1534|consen  179 D---KNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQYGE  254 (273)
T ss_pred             h---hhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHHhcc
Confidence            3   111111111                               11223 46777888888888888888777665443

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.71  E-value=0.00055  Score=49.76  Aligned_cols=82  Identities=17%  Similarity=0.107  Sum_probs=43.9

Q ss_pred             EEEEEEeCCChhhhh----hhhhhhc--cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC
Q 028686           52 IKLQIWDTAGQERFR----TITTAYY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR  125 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~----~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~  125 (205)
                      ..+.++|++|.....    .....+.  ...+.+++|+|....+..   ..+...+.+..  + ...+|.||.|....  
T Consensus        83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~---~~~~~~~~~~~--~-~~~viltk~D~~~~--  154 (173)
T cd03115          83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDA---VNQAKAFNEAL--G-ITGVILTKLDGDAR--  154 (173)
T ss_pred             CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHH---HHHHHHHHhhC--C-CCEEEEECCcCCCC--
Confidence            457889999964221    1111111  248899999998654322   22333333322  2 34677899996432  


Q ss_pred             ccCHHHHHHHHHHhCCcEE
Q 028686          126 AVPTSKGQALADEYGIKFF  144 (205)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~  144 (205)
                         ...+...+...++|+.
T Consensus       155 ---~g~~~~~~~~~~~p~~  170 (173)
T cd03115         155 ---GGAALSIRAVTGKPIK  170 (173)
T ss_pred             ---cchhhhhHHHHCcCeE
Confidence               1222335566666644

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>cd03114 ArgK-like The function of this protein family is unkown

Probab=97.71  E-value=0.00024  Score=50.43  Aligned_cols=58  Identities=21%  Similarity=0.185  Sum_probs=35.2

Q ss_pred             EEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 028686           51 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD  119 (205)
Q Consensus        51 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D  119 (205)
                      .+.+.++||+|.....   ..++..+|-+++|....-.+.+.-+.  ...+..      -=++++||+|
T Consensus        91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~k--~~~~~~------~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAIK--AGIMEI------ADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHhh--hhHhhh------cCEEEEeCCC
Confidence            3568899998865322   34778899888887665333332221  122221      2278899987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.67  E-value=0.0006  Score=50.78  Aligned_cols=84  Identities=18%  Similarity=0.073  Sum_probs=46.4

Q ss_pred             EEEEEEeCCChhhhhh----hhhhhcc--CCcEEEEEEeCCChh-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC
Q 028686           52 IKLQIWDTAGQERFRT----ITTAYYR--GAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK  124 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~----~~~~~~~--~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~  124 (205)
                      +.+.++||+|......    ....++.  ..+-+++|.+++..+ ..+.+..    .....   -+--++.+|.|...  
T Consensus        84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~----~~~~~---~~~~lIlTKlDet~--  154 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALA----FYEAF---GIDGLILTKLDETA--  154 (196)
T ss_dssp             SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHH----HHHHS---STCEEEEESTTSSS--
T ss_pred             CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHH----Hhhcc---cCceEEEEeecCCC--
Confidence            4589999999543221    1111111  466788888887754 2332222    22221   12356799999532  


Q ss_pred             CccCHHHHHHHHHHhCCcEEEEc
Q 028686          125 RAVPTSKGQALADEYGIKFFETS  147 (205)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~S  147 (205)
                         ..-.+..++...+.|+-.++
T Consensus       155 ---~~G~~l~~~~~~~~Pi~~it  174 (196)
T PF00448_consen  155 ---RLGALLSLAYESGLPISYIT  174 (196)
T ss_dssp             ---TTHHHHHHHHHHTSEEEEEE
T ss_pred             ---CcccceeHHHHhCCCeEEEE
Confidence               23456666777788766665

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.64  E-value=0.00051  Score=47.68  Aligned_cols=23  Identities=17%  Similarity=0.265  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      .+++.|++|+|||++++.+.+.-
T Consensus        21 ~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          21 NLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999998764

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.63  E-value=0.00043  Score=45.84  Aligned_cols=82  Identities=17%  Similarity=0.173  Sum_probs=49.8

Q ss_pred             EEEEC-CCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEe
Q 028686            6 RIYFE-RGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   84 (205)
Q Consensus         6 i~v~G-~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   84 (205)
                      |++.| ..|+||||+...|...--. ...++.-.       +.+.. +.+.++|+|+.....  ....+..+|.++++.+
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl~~-------d~d~~-~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~   70 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRVLLI-------DLDPQ-YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ   70 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEEEE-------eCCCC-CCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence            56666 5689999998776543211 11122221       22211 568999999875332  3366777999999887


Q ss_pred             CCChhHHHHHHHHHH
Q 028686           85 VTDESSFNNIRNWIR   99 (205)
Q Consensus        85 ~~~~~s~~~~~~~~~   99 (205)
                      .+ ..++..+..+++
T Consensus        71 ~~-~~s~~~~~~~~~   84 (104)
T cd02042          71 PS-PLDLDGLEKLLE   84 (104)
T ss_pred             CC-HHHHHHHHHHHH
Confidence            65 456666666555

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.63  E-value=0.0003  Score=64.54  Aligned_cols=113  Identities=20%  Similarity=0.188  Sum_probs=63.0

Q ss_pred             EEECCCCCcHHHHHHHHHhCC-CCCC--cccceeeEEEEEEEEECCEEEEEEEEeCCChh--------hhhhhhhhh---
Q 028686            7 IYFERGGVGKSCLLLRFSDGS-FTTS--FITTIGIDFKIRTIELDGKRIKLQIWDTAGQE--------RFRTITTAY---   72 (205)
Q Consensus         7 ~v~G~~~~GKtsli~~l~~~~-~~~~--~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~---   72 (205)
                      +|+|++|+||||++..--..- +...  .....+.....+...+.   -.-.++||.|..        .....|..+   
T Consensus       129 ~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~---deaVlIDtaGry~~q~s~~~~~~~~W~~fL~l  205 (1188)
T COG3523         129 MVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWWFT---DEAVLIDTAGRYITQDSADEVDRAEWLGFLGL  205 (1188)
T ss_pred             EEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCcccc---cceEEEcCCcceecccCcchhhHHHHHHHHHH
Confidence            689999999999976432211 1110  01111111111111111   245778998843        123344444   


Q ss_pred             ------ccCCcEEEEEEeCCC-----h-hH---HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686           73 ------YRGAMGILLVYDVTD-----E-SS---FNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  122 (205)
Q Consensus        73 ------~~~~d~~i~v~d~~~-----~-~s---~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~  122 (205)
                            .+-.+++|+..|+.+     + +-   ...++.-++++.....-..|++|++||.|+..
T Consensus       206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP  270 (1188)
T ss_pred             HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence                  235889999999865     1 11   12233345555555556799999999999864

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=97.61  E-value=0.00015  Score=58.63  Aligned_cols=155  Identities=15%  Similarity=0.061  Sum_probs=88.7

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCC--C-----------------------------CCCcccceeeEEEEEEEEECCEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGS--F-----------------------------TTSFITTIGIDFKIRTIELDGKR   51 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~--~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~   51 (205)
                      -++++++|.-.+||||+-..+....  +                             .++....-........+....  
T Consensus        79 hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~--  156 (501)
T KOG0459|consen   79 HVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN--  156 (501)
T ss_pred             CceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc--
Confidence            4789999999999999866653321  0                             000110000111112222222  


Q ss_pred             EEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCCh---hHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCcc
Q 028686           52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE---SSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAV  127 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~  127 (205)
                      -.+.+.|.||+..|-.....-..+||+.++|+++.-.   -.|+.--+-.+...-+.. .-...|+++||+|-+..++..
T Consensus       157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~  236 (501)
T KOG0459|consen  157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSN  236 (501)
T ss_pred             eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcch
Confidence            3588999999988776555555679999999887432   234433222222221111 235678889999965433221


Q ss_pred             -----CHHHHHHHHHHhC------CcEEEEcCCCCCCHHHHHH
Q 028686          128 -----PTSKGQALADEYG------IKFFETSAKTNLNVEQVFF  159 (205)
Q Consensus       128 -----~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~~~~  159 (205)
                           ..+.+..|....|      ..++++|..+|.++++...
T Consensus       237 eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  237 ERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             hhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence                 1223334444333      6689999999999887654

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.57  E-value=0.00063  Score=45.40  Aligned_cols=99  Identities=16%  Similarity=0.111  Sum_probs=58.0

Q ss_pred             CCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChh
Q 028686           10 ERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES   89 (205)
Q Consensus        10 G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~   89 (205)
                      +..|+||||+...|...--......+.-.|....     .. -.+.++|+|+.....  ....+..+|.++++.+.+ ..
T Consensus         7 ~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~-----~~-~D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~-~~   77 (106)
T cd03111           7 AKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ-----FG-DDYVVVDLGRSLDEV--SLAALDQADRVFLVTQQD-LP   77 (106)
T ss_pred             CCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC-----CC-CCEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCC-hH
Confidence            5567999998776643211110112111111111     00 158999999865332  344667899999888665 45


Q ss_pred             HHHHHHHHHHHHHhhcCC-CCcEEEEEeC
Q 028686           90 SFNNIRNWIRNIEQHASD-NVNKVLVGNK  117 (205)
Q Consensus        90 s~~~~~~~~~~i~~~~~~-~~piiiv~nK  117 (205)
                      ++..+..+.+.+.....+ ...+.+|+|+
T Consensus        78 s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          78 SIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             HHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            677777777777665433 4567777775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.55  E-value=6.9e-05  Score=60.33  Aligned_cols=57  Identities=18%  Similarity=0.225  Sum_probs=41.3

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   63 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~   63 (205)
                      -|++.|+|.|++||||+||+|.....-. .-++.|.+.....+..+.   .+.+.|.||..
T Consensus       252 sIrvGViG~PNVGKSSvINsL~~~k~C~-vg~~pGvT~smqeV~Ldk---~i~llDsPgiv  308 (435)
T KOG2484|consen  252 SIRVGIIGYPNVGKSSVINSLKRRKACN-VGNVPGVTRSMQEVKLDK---KIRLLDSPGIV  308 (435)
T ss_pred             ceEeeeecCCCCChhHHHHHHHHhcccc-CCCCccchhhhhheeccC---CceeccCCcee
Confidence            4899999999999999999999887421 123334445555555543   57888999964

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.52  E-value=0.00097  Score=43.00  Aligned_cols=96  Identities=16%  Similarity=0.097  Sum_probs=53.7

Q ss_pred             EEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhh-hhhhccCCcEEEEEEe
Q 028686            6 RIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-TTAYYRGAMGILLVYD   84 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~d~~i~v~d   84 (205)
                      +++.|.+|+||||+...+...--... .+.         .-++    .+.++|+++....... .......+|.++++++
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g-~~v---------~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~   67 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRG-KRV---------LLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT   67 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCC-CeE---------EEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence            57889999999999988865421111 111         1111    5788999986543321 1445567888888887


Q ss_pred             CCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEe
Q 028686           85 VTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGN  116 (205)
Q Consensus        85 ~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~n  116 (205)
                      .... +........+...... ....++.++.|
T Consensus        68 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vv~N   99 (99)
T cd01983          68 PEAL-AVLGARRLTEVVLELAIEGLRPVGVVVN   99 (99)
T ss_pred             Cchh-hHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence            7643 3444433322222222 23345555544

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.51  E-value=0.00071  Score=55.97  Aligned_cols=89  Identities=11%  Similarity=0.081  Sum_probs=48.5

Q ss_pred             EEEEEEeCCChhhhh----hhhhhhc--cCCcEEEEEEeCCC-hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC
Q 028686           52 IKLQIWDTAGQERFR----TITTAYY--RGAMGILLVYDVTD-ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK  124 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~----~~~~~~~--~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~  124 (205)
                      ..+.++||+|.....    .....+.  ....-.++|.|++. .+.+.++   ...+..    --+--++++|.|-..  
T Consensus       270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~---~~~f~~----~~~~~~I~TKlDEt~--  340 (420)
T PRK14721        270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEV---ISAYQG----HGIHGCIITKVDEAA--  340 (420)
T ss_pred             CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHH---HHHhcC----CCCCEEEEEeeeCCC--
Confidence            457899999965422    1122221  12345678888874 3334333   222221    123357899999532  


Q ss_pred             CccCHHHHHHHHHHhCCcEEEEcCCCCCCH
Q 028686          125 RAVPTSKGQALADEYGIKFFETSAKTNLNV  154 (205)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  154 (205)
                         ..-.+..++...+.++..++  +|.+|
T Consensus       341 ---~~G~~l~~~~~~~lPi~yvt--~Gq~V  365 (420)
T PRK14721        341 ---SLGIALDAVIRRKLVLHYVT--NGQKV  365 (420)
T ss_pred             ---CccHHHHHHHHhCCCEEEEE--CCCCc
Confidence               23445566677777766665  34455

>TIGR00959 ffh signal recognition particle protein

Probab=97.48  E-value=0.00091  Score=55.59  Aligned_cols=86  Identities=20%  Similarity=0.135  Sum_probs=48.4

Q ss_pred             EEEEEEeCCChhhhhh-h---hhhh--ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC
Q 028686           52 IKLQIWDTAGQERFRT-I---TTAY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR  125 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~-~---~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~  125 (205)
                      +.+.++||+|...... +   ...+  .-..+.+++|+|....+   ++..+...+....   -..-+|.||.|...   
T Consensus       183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v---~i~giIlTKlD~~~---  253 (428)
T TIGR00959       183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL---GLTGVVLTKLDGDA---  253 (428)
T ss_pred             CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC---CCCEEEEeCccCcc---
Confidence            5689999999542211 1   1111  22477889999987543   3333334443222   12357799999532   


Q ss_pred             ccCHHHHHHHHHHhCCcEEEEcC
Q 028686          126 AVPTSKGQALADEYGIKFFETSA  148 (205)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~Sa  148 (205)
                        ..-.+..++...++|+..+..
T Consensus       254 --~~G~~lsi~~~~~~PI~fi~~  274 (428)
T TIGR00959       254 --RGGAALSVRSVTGKPIKFIGV  274 (428)
T ss_pred             --cccHHHHHHHHHCcCEEEEeC
Confidence              122366667777777666654

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.46  E-value=0.0027  Score=46.47  Aligned_cols=85  Identities=21%  Similarity=0.125  Sum_probs=46.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEE--eCCC-hhhhhhhhhhhccCCcEEEE
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIW--DTAG-QERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~--D~~g-~~~~~~~~~~~~~~~d~~i~   81 (205)
                      .++++|+.|+|||||++.+.+...     |+.|.      +.+++..+.+..-  +.+| +.+.-.+...++.+.+++++
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~------i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllL   95 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQLI-----PNGDN------DEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLF   95 (177)
T ss_pred             EEEEECCCCChHHHHHHHHHcCCC-----CCCcE------EEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            478999999999999999988542     22221      1122222211111  1443 33444666777777764443


Q ss_pred             EEeC----CChhHHHHHHHHHHHHH
Q 028686           82 VYDV----TDESSFNNIRNWIRNIE  102 (205)
Q Consensus        82 v~d~----~~~~s~~~~~~~~~~i~  102 (205)
                        |-    -|+.+-..+..++..+.
T Consensus        96 --DEPts~LD~~~~~~l~~~l~~~~  118 (177)
T cd03222          96 --DEPSAYLDIEQRLNAARAIRRLS  118 (177)
T ss_pred             --ECCcccCCHHHHHHHHHHHHHHH
Confidence              42    23555555555555543

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.44  E-value=0.00076  Score=47.31  Aligned_cols=105  Identities=16%  Similarity=0.162  Sum_probs=61.0

Q ss_pred             EECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCC
Q 028686            8 YFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD   87 (205)
Q Consensus         8 v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~   87 (205)
                      .-|.+|+|||++.-.+...-- ....++.-.+.....   ....+.+.++|+|+..  .......+..+|.++++.+.+ 
T Consensus         5 ~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D~~~---~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~-   77 (139)
T cd02038           5 TSGKGGVGKTNISANLALALA-KLGKRVLLLDADLGL---ANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE-   77 (139)
T ss_pred             EcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECCCCC---CCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-
Confidence            447889999999766643210 001111111111000   0011568999999753  223346788899999998876 


Q ss_pred             hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028686           88 ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM  120 (205)
Q Consensus        88 ~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl  120 (205)
                      ..++..+...++.+.... ...++.+|.|+.+-
T Consensus        78 ~~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~  109 (139)
T cd02038          78 PTSITDAYALIKKLAKQL-RVLNFRVVVNRAES  109 (139)
T ss_pred             hhHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCC
Confidence            445555555555554433 34678899999863

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.42  E-value=0.00013  Score=53.51  Aligned_cols=23  Identities=22%  Similarity=0.336  Sum_probs=21.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      +||+|+|+|||||||+..+|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999876

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.42  E-value=0.00013  Score=49.62  Aligned_cols=22  Identities=27%  Similarity=0.299  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .|+|.|.+||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999774

...

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.42  E-value=0.0017  Score=54.08  Aligned_cols=84  Identities=18%  Similarity=0.202  Sum_probs=47.5

Q ss_pred             EEEEEEeCCChhhhh----hhhhhhcc---CCcEEEEEEeCCCh-hHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCC
Q 028686           52 IKLQIWDTAGQERFR----TITTAYYR---GAMGILLVYDVTDE-SSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDE  122 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~----~~~~~~~~---~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~Dl~~  122 (205)
                      +.+.++||+|.....    .....++.   ...-.++|++.+-. ..+..+   +..+.     .++ --++++|.|-..
T Consensus       300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~---~~~f~-----~~~~~~vI~TKlDet~  371 (424)
T PRK05703        300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDI---YKHFS-----RLPLDGLIFTKLDETS  371 (424)
T ss_pred             CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHH---HHHhC-----CCCCCEEEEecccccc
Confidence            568999999975322    12223333   23355677777653 333332   23332     122 258899999532


Q ss_pred             CCCccCHHHHHHHHHHhCCcEEEEcC
Q 028686          123 SKRAVPTSKGQALADEYGIKFFETSA  148 (205)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~Sa  148 (205)
                           ..-.+..+....++|+..++.
T Consensus       372 -----~~G~i~~~~~~~~lPv~yit~  392 (424)
T PRK05703        372 -----SLGSILSLLIESGLPISYLTN  392 (424)
T ss_pred             -----cccHHHHHHHHHCCCEEEEeC
Confidence                 234567777788888766653

>PRK08118 topology modulation protein; Reviewed

Probab=97.41  E-value=0.00014  Score=52.80  Aligned_cols=22  Identities=32%  Similarity=0.445  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      ||+|+|++|||||||...|...
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7899999999999999999764

>PRK14530 adenylate kinase; Provisional

Probab=97.41  E-value=0.00014  Score=54.87  Aligned_cols=25  Identities=16%  Similarity=0.151  Sum_probs=22.6

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHh
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      |+..+|+|+|+|||||||+.+.|..
T Consensus         1 ~~~~~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          1 MSQPRILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHH
Confidence            6778999999999999999999964

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.40  E-value=0.00029  Score=58.67  Aligned_cols=85  Identities=19%  Similarity=0.134  Sum_probs=46.4

Q ss_pred             EEEEEEeCCChhhhhhh----hhhh--ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCC
Q 028686           52 IKLQIWDTAGQERFRTI----TTAY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESK  124 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~Dl~~~~  124 (205)
                      ..+.++||+|.......    ...+  ...+|.+++|+|++..+   +.......+..    .++ .-+|.||.|...  
T Consensus       176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~----~l~i~gvIlTKlD~~a--  246 (437)
T PRK00771        176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHE----AVGIGGIIITKLDGTA--  246 (437)
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHh----cCCCCEEEEecccCCC--
Confidence            36899999996543211    1111  23578899999987653   12122222222    233 357789999632  


Q ss_pred             CccCHHHHHHHHHHhCCcEEEEcC
Q 028686          125 RAVPTSKGQALADEYGIKFFETSA  148 (205)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~Sa  148 (205)
                         ..-.+..+....+.|+..++.
T Consensus       247 ---~~G~~ls~~~~~~~Pi~fig~  267 (437)
T PRK00771        247 ---KGGGALSAVAETGAPIKFIGT  267 (437)
T ss_pred             ---cccHHHHHHHHHCcCEEEEec
Confidence               123344455566666655543

>PRK10867 signal recognition particle protein; Provisional

Probab=97.39  E-value=0.0014  Score=54.50  Aligned_cols=86  Identities=19%  Similarity=0.103  Sum_probs=46.9

Q ss_pred             EEEEEEeCCChhhhhh----hhhhh--ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC
Q 028686           52 IKLQIWDTAGQERFRT----ITTAY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR  125 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~  125 (205)
                      +.+.++||+|......    ....+  .-..+.+++|+|....+   ++......+....   -..-+|.||.|... . 
T Consensus       184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~---~i~giIlTKlD~~~-r-  255 (433)
T PRK10867        184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL---GLTGVILTKLDGDA-R-  255 (433)
T ss_pred             CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC---CCCEEEEeCccCcc-c-
Confidence            5689999999542211    11111  11466789999987543   2222233333221   12357789999532 1 


Q ss_pred             ccCHHHHHHHHHHhCCcEEEEcC
Q 028686          126 AVPTSKGQALADEYGIKFFETSA  148 (205)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~Sa  148 (205)
                         .-.+..+....++|+..++.
T Consensus       256 ---gG~alsi~~~~~~PI~fig~  275 (433)
T PRK10867        256 ---GGAALSIRAVTGKPIKFIGT  275 (433)
T ss_pred             ---ccHHHHHHHHHCcCEEEEeC
Confidence               12356666777777666654

>PRK07261 topology modulation protein; Provisional

Probab=97.38  E-value=0.00015  Score=52.78  Aligned_cols=23  Identities=26%  Similarity=0.287  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .||+|+|.+|||||||.+.|...
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            37999999999999999998654

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=97.32  E-value=0.0012  Score=55.15  Aligned_cols=124  Identities=24%  Similarity=0.241  Sum_probs=76.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC------------CCCC--cccceeeEEEEEEEEE----------------CCEEEEE
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS------------FTTS--FITTIGIDFKIRTIEL----------------DGKRIKL   54 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~------------~~~~--~~~t~~~~~~~~~~~~----------------~~~~~~~   54 (205)
                      ++-++.....|||||...|...-            |..+  ...--+++..+..+..                ++..+.+
T Consensus        21 NmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FLi  100 (842)
T KOG0469|consen   21 NMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFLI  100 (842)
T ss_pred             cceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcceeE
Confidence            56778888999999999885321            1000  0001112222222221                3345788


Q ss_pred             EEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHH
Q 028686           55 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG  132 (205)
Q Consensus        55 ~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~  132 (205)
                      .++|.||+.+|.+...+.++-.|+++.|+|..+.--...-..+.+.+.    ..+..+++.||.|-.--+.+...++.
T Consensus       101 NLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~----ERIkPvlv~NK~DRAlLELq~~~EeL  174 (842)
T KOG0469|consen  101 NLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIA----ERIKPVLVMNKMDRALLELQLSQEEL  174 (842)
T ss_pred             EeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHH----hhccceEEeehhhHHHHhhcCCHHHH
Confidence            999999999999999999999999999999876422211111223333    23556788999994322445555554

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.30  E-value=0.00019  Score=50.32  Aligned_cols=21  Identities=33%  Similarity=0.360  Sum_probs=19.0

Q ss_pred             EEEECCCCCcHHHHHHHHHhC
Q 028686            6 RIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~   26 (205)
                      |+++|+||||||||++.|...
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~   22 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKR   22 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999753

...

>PRK08233 hypothetical protein; Provisional

Probab=97.28  E-value=0.00028  Score=51.53  Aligned_cols=26  Identities=19%  Similarity=0.116  Sum_probs=23.2

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhC
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      |..+-|+|.|.+|||||||.++|...
T Consensus         1 ~~~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          1 KKTKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhh
Confidence            67788999999999999999999764

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.25  E-value=0.0045  Score=50.54  Aligned_cols=86  Identities=9%  Similarity=0.074  Sum_probs=45.9

Q ss_pred             EEEEEEeCCChhhhhh----hhhhhcc--CCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC
Q 028686           52 IKLQIWDTAGQERFRT----ITTAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR  125 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~----~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~  125 (205)
                      +.+.++||+|......    ....+..  ..+..++|.+...  ...++...++.+.    .--+--+|++|.|-..   
T Consensus       286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f~----~l~i~glI~TKLDET~---  356 (407)
T PRK12726        286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKLA----EIPIDGFIITKMDETT---  356 (407)
T ss_pred             CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhcC----cCCCCEEEEEcccCCC---
Confidence            5789999999743221    1122222  3455566766533  2233332222221    1123367799999532   


Q ss_pred             ccCHHHHHHHHHHhCCcEEEEcC
Q 028686          126 AVPTSKGQALADEYGIKFFETSA  148 (205)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~Sa  148 (205)
                        ..-.+..++...+.|+..++.
T Consensus       357 --~~G~~Lsv~~~tglPIsylt~  377 (407)
T PRK12726        357 --RIGDLYTVMQETNLPVLYMTD  377 (407)
T ss_pred             --CccHHHHHHHHHCCCEEEEec
Confidence              234456667777877666653

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.23  E-value=0.00052  Score=53.79  Aligned_cols=58  Identities=16%  Similarity=0.143  Sum_probs=35.9

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCC------CCcccceeeEEEEEEEEECCEEEEEEEEeCCCh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFT------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   62 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~------~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~   62 (205)
                      ..++.|+|.||+|||||+|.+......      ....|....... ..+.+..+. .+.+.||||.
T Consensus       143 ~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~-~~iri~~rp-~vy~iDTPGi  206 (335)
T KOG2485|consen  143 EYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVS-ERIRISHRP-PVYLIDTPGI  206 (335)
T ss_pred             ceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeeh-hheEeccCC-ceEEecCCCc
Confidence            367999999999999999998665321      122232222221 113443333 3789999995

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.23  E-value=0.0055  Score=43.21  Aligned_cols=23  Identities=30%  Similarity=0.241  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      .++++|+.|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          28 RIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            36899999999999999998864

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.23  E-value=0.0028  Score=54.03  Aligned_cols=21  Identities=14%  Similarity=0.219  Sum_probs=18.3

Q ss_pred             EEEECCCCCcHHHHHHHHHhC
Q 028686            6 RIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~   26 (205)
                      +++.|++||||||.++.|+..
T Consensus        48 LlLtGP~G~GKtttv~~La~e   68 (519)
T PF03215_consen   48 LLLTGPSGCGKTTTVKVLAKE   68 (519)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            466799999999999999765

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.21  E-value=0.00037  Score=42.68  Aligned_cols=21  Identities=19%  Similarity=0.249  Sum_probs=19.1

Q ss_pred             EEEECCCCCcHHHHHHHHHhC
Q 028686            6 RIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~   26 (205)
                      |++.|.+|+||||+.+.|...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            688999999999999999765

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.19  E-value=0.00027  Score=50.88  Aligned_cols=22  Identities=14%  Similarity=0.132  Sum_probs=17.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999865

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.18  E-value=0.003  Score=52.19  Aligned_cols=133  Identities=20%  Similarity=0.257  Sum_probs=68.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCC-CC----C------C-----------cccceeeEEEEEE-E-E----ECCEEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGS-FT----T------S-----------FITTIGIDFKIRT-I-E----LDGKRIKLQ   55 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~-~~----~------~-----------~~~t~~~~~~~~~-~-~----~~~~~~~~~   55 (205)
                      .-++++|++||||||++..|...- ..    .      .           +....+..+.... . .    +....+.+.
T Consensus       224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V  303 (432)
T PRK12724        224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI  303 (432)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence            348899999999999999986421 00    0      0           0001111111100 0 0    011235678


Q ss_pred             EEeCCChhhhh----hhhhhhcc-----CCcEEEEEEeCCChh-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC
Q 028686           56 IWDTAGQERFR----TITTAYYR-----GAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR  125 (205)
Q Consensus        56 i~D~~g~~~~~----~~~~~~~~-----~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~  125 (205)
                      ++||+|.....    ..+..+++     ...-.++|.|++... ...++   ...+..    --+--+|++|.|-..   
T Consensus       304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~---~~~f~~----~~~~glIlTKLDEt~---  373 (432)
T PRK12724        304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTV---LKAYES----LNYRRILLTKLDEAD---  373 (432)
T ss_pred             EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHH---HHHhcC----CCCCEEEEEcccCCC---
Confidence            99999964211    11122222     133577888887643 33332   222211    123357899999532   


Q ss_pred             ccCHHHHHHHHHHhCCcEEEEcC
Q 028686          126 AVPTSKGQALADEYGIKFFETSA  148 (205)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~Sa  148 (205)
                        ..-.+..++...+.|+..++.
T Consensus       374 --~~G~il~i~~~~~lPI~ylt~  394 (432)
T PRK12724        374 --FLGSFLELADTYSKSFTYLSV  394 (432)
T ss_pred             --CccHHHHHHHHHCCCEEEEec
Confidence              223355666677777665553

>COG1161 Predicted GTPases [General function prediction only]

Probab=97.17  E-value=0.0016  Score=52.36  Aligned_cols=97  Identities=22%  Similarity=0.194  Sum_probs=63.7

Q ss_pred             eCCChh-hhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHH
Q 028686           58 DTAGQE-RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALA  136 (205)
Q Consensus        58 D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~  136 (205)
                      +.+|+. ++.......+..+|+++.|+|+.++.+-..     ..+.+.. .+.|.++|+||.||.+  ..+..+=.+.+.
T Consensus        16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~-----~~l~~~v-~~k~~i~vlNK~DL~~--~~~~~~W~~~~~   87 (322)
T COG1161          16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN-----PELERIV-KEKPKLLVLNKADLAP--KEVTKKWKKYFK   87 (322)
T ss_pred             CCCCchHHHHHHHHHhcccCCEEEEEEeccccccccC-----ccHHHHH-ccCCcEEEEehhhcCC--HHHHHHHHHHHH
Confidence            446654 566777888899999999999999876443     3333333 2355699999999964  222223333444


Q ss_pred             HHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686          137 DEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus       137 ~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      .+.+...+.+++..+.+...+...+.
T Consensus        88 ~~~~~~~~~v~~~~~~~~~~i~~~~~  113 (322)
T COG1161          88 KEEGIKPIFVSAKSRQGGKKIRKALE  113 (322)
T ss_pred             hcCCCccEEEEeecccCccchHHHHH
Confidence            44466678888888877666664333

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.15  E-value=0.0073  Score=48.91  Aligned_cols=21  Identities=24%  Similarity=0.256  Sum_probs=18.3

Q ss_pred             EEEECCCCCcHHHHHHHHHhC
Q 028686            6 RIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .+|.|.-|||||||+++++..
T Consensus         7 ~iltGFLGaGKTTll~~ll~~   27 (341)
T TIGR02475         7 TIVTGFLGAGKTTLIRHLLQN   27 (341)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            466799999999999999864

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.15  E-value=0.00046  Score=52.58  Aligned_cols=22  Identities=27%  Similarity=0.258  Sum_probs=20.0

Q ss_pred             EEEECCCCCcHHHHHHHHHhCC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      |+++|++|||||||++.+.+-.
T Consensus        32 vsilGpSGcGKSTLLriiAGL~   53 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6899999999999999998764

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.14  E-value=0.0079  Score=49.21  Aligned_cols=154  Identities=16%  Similarity=0.163  Sum_probs=76.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCC--C-CCcccceeeEEEEEE---------------EEE------------CCEEEEE
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSF--T-TSFITTIGIDFKIRT---------------IEL------------DGKRIKL   54 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~--~-~~~~~t~~~~~~~~~---------------~~~------------~~~~~~~   54 (205)
                      -|+++|+.||||||-+..|...-.  . ......+..|.|..-               +.+            .-..+.+
T Consensus       205 vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~d~  284 (407)
T COG1419         205 VIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDCDV  284 (407)
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcCCE
Confidence            478999999999999988854322  0 111111111222110               000            0123568


Q ss_pred             EEEeCCChhhhhhh----hhhhccCC--cEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcE-EEEEeCCCCCCCCCcc
Q 028686           55 QIWDTAGQERFRTI----TTAYYRGA--MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK-VLVGNKADMDESKRAV  127 (205)
Q Consensus        55 ~i~D~~g~~~~~~~----~~~~~~~~--d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-iiv~nK~Dl~~~~~~~  127 (205)
                      .++||.|...++..    ...++..+  .-..+|++++..  .+++...++.+..     +|+ -++++|.|-..     
T Consensus       285 ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~-----~~i~~~I~TKlDET~-----  352 (407)
T COG1419         285 ILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSL-----FPIDGLIFTKLDETT-----  352 (407)
T ss_pred             EEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhcc-----CCcceeEEEcccccC-----
Confidence            99999997654332    23333322  234456677653  2444333344322     333 46789999532     


Q ss_pred             CHHHHHHHHHHhCCcEEEEc--CCCCCCHHHH-HHHHHHHHHHHhc
Q 028686          128 PTSKGQALADEYGIKFFETS--AKTNLNVEQV-FFSIARDIKQRLA  170 (205)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~S--a~~~~gi~~~-~~~i~~~~~~~~~  170 (205)
                      ..-.+-.+..+.+.|+..++  ..=.++|... -+++++.+.....
T Consensus       353 s~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~~~  398 (407)
T COG1419         353 SLGNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGTFA  398 (407)
T ss_pred             chhHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhcccc
Confidence            23444555555565544443  2222333322 2345555554433

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.14  E-value=0.0015  Score=47.57  Aligned_cols=44  Identities=30%  Similarity=0.181  Sum_probs=27.7

Q ss_pred             cEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686           77 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  122 (205)
Q Consensus        77 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~  122 (205)
                      |++++|+|+.++.+-.+ ..+.+.+. ....+.|+++|+||+|+.+
T Consensus         1 DvVl~VvDar~p~~~~~-~~i~~~~~-l~~~~kp~IlVlNK~DL~~   44 (172)
T cd04178           1 DVILEVLDARDPLGCRC-PQVEEAVL-QAGGNKKLVLVLNKIDLVP   44 (172)
T ss_pred             CEEEEEEECCCCCCCCC-HHHHHHHH-hccCCCCEEEEEehhhcCC
Confidence            68999999987533211 12223321 1123589999999999953

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.13  E-value=0.0034  Score=55.57  Aligned_cols=95  Identities=16%  Similarity=0.100  Sum_probs=50.8

Q ss_pred             EEEEEEeCCChhhhh----hhhhhh--ccCCcEEEEEEeCCC-hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC
Q 028686           52 IKLQIWDTAGQERFR----TITTAY--YRGAMGILLVYDVTD-ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK  124 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~----~~~~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~  124 (205)
                      ..+.|+||+|.....    .....+  ....+-.++|.|.+. .+.+.++...|..+   ... -+--+|++|.|-..  
T Consensus       264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~---~~~-~i~glIlTKLDEt~--  337 (767)
T PRK14723        264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHG---AGE-DVDGCIITKLDEAT--  337 (767)
T ss_pred             CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhc---ccC-CCCEEEEeccCCCC--
Confidence            458999999944221    111111  123456788888875 34444443322221   100 13357799999532  


Q ss_pred             CccCHHHHHHHHHHhCCcEEEEcCCCCCCH-HHH
Q 028686          125 RAVPTSKGQALADEYGIKFFETSAKTNLNV-EQV  157 (205)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi-~~~  157 (205)
                         ..-.+..+....++|+..++  +|++| +++
T Consensus       338 ---~~G~iL~i~~~~~lPI~yit--~GQ~VPdDL  366 (767)
T PRK14723        338 ---HLGPALDTVIRHRLPVHYVS--TGQKVPEHL  366 (767)
T ss_pred             ---CccHHHHHHHHHCCCeEEEe--cCCCChhhc
Confidence               23445566667777766664  34555 443

>PRK03839 putative kinase; Provisional

Probab=97.13  E-value=0.00041  Score=50.81  Aligned_cols=22  Identities=18%  Similarity=0.229  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      +|+|+|.|||||||+.++|...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999999764

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.12  E-value=0.00046  Score=52.66  Aligned_cols=25  Identities=28%  Similarity=0.232  Sum_probs=21.9

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhC
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      ..+||+|+|+|||||||+...|...
T Consensus         5 ~~mrIvl~G~PGsGK~T~a~~La~~   29 (229)
T PTZ00088          5 GPLKIVLFGAPGVGKGTFAEILSKK   29 (229)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999999998653

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.12  E-value=0.0023  Score=48.43  Aligned_cols=21  Identities=19%  Similarity=0.132  Sum_probs=16.7

Q ss_pred             ceEEEEECCCCCcHHHHHHHH
Q 028686            3 FLLRIYFERGGVGKSCLLLRF   23 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l   23 (205)
                      .+--+|+|+|||||||..+-.
T Consensus         2 ~fgqvVIGPPgSGKsTYc~g~   22 (290)
T KOG1533|consen    2 PFGQVVIGPPGSGKSTYCNGM   22 (290)
T ss_pred             CcceEEEcCCCCCccchhhhH
Confidence            345689999999999987543

>PRK06217 hypothetical protein; Validated

Probab=97.10  E-value=0.00049  Score=50.58  Aligned_cols=23  Identities=13%  Similarity=0.118  Sum_probs=20.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .+|+|+|.+||||||+..+|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999764

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.09  E-value=0.00061  Score=40.63  Aligned_cols=21  Identities=29%  Similarity=0.268  Sum_probs=18.4

Q ss_pred             EEEECCCCCcHHHHHHHHHhC
Q 028686            6 RIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .+|.|+.|+||||++.++...
T Consensus        26 tli~G~nGsGKSTllDAi~~~   46 (62)
T PF13555_consen   26 TLITGPNGSGKSTLLDAIQTV   46 (62)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999987543

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.08  E-value=0.003  Score=53.23  Aligned_cols=89  Identities=16%  Similarity=0.150  Sum_probs=46.7

Q ss_pred             EEEEEEeCCChhhhhh---hhhhhccC---CcEEEEEEeCCC-hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC
Q 028686           52 IKLQIWDTAGQERFRT---ITTAYYRG---AMGILLVYDVTD-ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK  124 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~---~~~~~~~~---~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~  124 (205)
                      ..+.++||+|......   .....+..   ..-.++|+|.+. ...+.++.   ..+   . ....--+|+||.|-..  
T Consensus       335 ~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~---~~f---~-~~~~~g~IlTKlDet~--  405 (484)
T PRK06995        335 KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVV---QAY---R-GPGLAGCILTKLDEAA--  405 (484)
T ss_pred             CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHH---HHh---c-cCCCCEEEEeCCCCcc--
Confidence            3578999999543221   11112221   122577888765 33333222   222   1 1123457789999532  


Q ss_pred             CccCHHHHHHHHHHhCCcEEEEcCCCCCCH
Q 028686          125 RAVPTSKGQALADEYGIKFFETSAKTNLNV  154 (205)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  154 (205)
                         ..-.+..+....++++..++  +|++|
T Consensus       406 ---~~G~~l~i~~~~~lPI~yvt--~GQ~V  430 (484)
T PRK06995        406 ---SLGGALDVVIRYKLPLHYVS--NGQRV  430 (484)
T ss_pred             ---cchHHHHHHHHHCCCeEEEe--cCCCC
Confidence               23455666777787766664  34555

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.08  E-value=0.00053  Score=47.13  Aligned_cols=22  Identities=18%  Similarity=0.188  Sum_probs=19.8

Q ss_pred             EEEECCCCCcHHHHHHHHHhCC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      |++.|++|+|||++++.+...-
T Consensus         1 ill~G~~G~GKT~l~~~la~~l   22 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL   22 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT
T ss_pred             CEEECcCCCCeeHHHHHHHhhc
Confidence            6899999999999999998753

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.07  E-value=0.00061  Score=51.52  Aligned_cols=22  Identities=27%  Similarity=0.211  Sum_probs=19.6

Q ss_pred             EEEECCCCCcHHHHHHHHHhCC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      |+++|++|||||||+|.+-+-.
T Consensus        34 vaI~GpSGSGKSTLLniig~ld   55 (226)
T COG1136          34 VAIVGPSGSGKSTLLNLLGGLD   55 (226)
T ss_pred             EEEECCCCCCHHHHHHHHhccc
Confidence            6899999999999999987654

>PRK14531 adenylate kinase; Provisional

Probab=97.05  E-value=0.00059  Score=50.19  Aligned_cols=24  Identities=17%  Similarity=0.234  Sum_probs=20.9

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhC
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      +.+|+++|+|||||||+...|...
T Consensus         2 ~~~i~i~G~pGsGKsT~~~~la~~   25 (183)
T PRK14531          2 KQRLLFLGPPGAGKGTQAARLCAA   25 (183)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999998654

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=97.05  E-value=0.044  Score=39.64  Aligned_cols=137  Identities=10%  Similarity=0.084  Sum_probs=89.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      -.|+++|..+.++..|...+...+-          ++. ..+..      ..-.-.|  .+....    =...|.++|++
T Consensus        16 atiLLVg~e~~~~~~LA~a~l~~~~----------~~~-l~Vh~------a~sLPLp--~e~~~l----RprIDlIVFvi   72 (176)
T PF11111_consen   16 ATILLVGTEEALLQQLAEAMLEEDK----------EFK-LKVHL------AKSLPLP--SENNNL----RPRIDLIVFVI   72 (176)
T ss_pred             eEEEEecccHHHHHHHHHHHHhhcc----------cee-EEEEE------eccCCCc--ccccCC----CceeEEEEEEE
Confidence            4689999999999999999986321          011 11111      0001111  111111    22479999999


Q ss_pred             eCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHH
Q 028686           84 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR  163 (205)
Q Consensus        84 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~  163 (205)
                      |....-|+..++.-+..+......+ .++++++-.... +...+...++.+++..++.+++.+.-.+.++...+=+.+++
T Consensus        73 nl~sk~SL~~ve~SL~~vd~~fflG-KVCfl~t~a~~~-~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lAqRLL~  150 (176)
T PF11111_consen   73 NLHSKYSLQSVEASLSHVDPSFFLG-KVCFLATNAGRE-SHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLAQRLLR  150 (176)
T ss_pred             ecCCcccHHHHHHHHhhCChhhhcc-ceEEEEcCCCcc-cccccCHHHHHHHHHHhCCCEEEeecccchHHHHHHHHHHH
Confidence            9999999998887777775544444 345555444432 24678899999999999999999888777666555555554


Q ss_pred             HH
Q 028686          164 DI  165 (205)
Q Consensus       164 ~~  165 (205)
                      .+
T Consensus       151 ~l  152 (176)
T PF11111_consen  151 ML  152 (176)
T ss_pred             HH
Confidence            44

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.03  E-value=0.0062  Score=44.44  Aligned_cols=85  Identities=21%  Similarity=0.224  Sum_probs=59.6

Q ss_pred             EEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCH
Q 028686           50 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPT  129 (205)
Q Consensus        50 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~  129 (205)
                      ..+.+.++|+|+....  .....+..+|.+++++..+. .+...+..+.+.+...   +.|+.+|+|+.|...    ...
T Consensus        91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~----~~~  160 (179)
T cd03110          91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLND----EIA  160 (179)
T ss_pred             cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCc----chH
Confidence            3567899999965422  23345678999999988774 3666676666666543   467899999998632    234


Q ss_pred             HHHHHHHHHhCCcEE
Q 028686          130 SKGQALADEYGIKFF  144 (205)
Q Consensus       130 ~~~~~~~~~~~~~~~  144 (205)
                      +++.++.++.+++++
T Consensus       161 ~~~~~~~~~~~~~vl  175 (179)
T cd03110         161 EEIEDYCEEEGIPIL  175 (179)
T ss_pred             HHHHHHHHHcCCCeE
Confidence            667778888887765

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.02  E-value=0.00068  Score=46.59  Aligned_cols=25  Identities=16%  Similarity=0.090  Sum_probs=21.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSF   28 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~   28 (205)
                      -.++++|++|+|||+++..++..-.
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~   27 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELG   27 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccC
Confidence            3689999999999999999988654

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.98  E-value=0.00085  Score=50.14  Aligned_cols=23  Identities=26%  Similarity=0.312  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      .++++|++|||||||++.+-+.+
T Consensus        30 vv~iiGpSGSGKSTlLRclN~LE   52 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLNGLE   52 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCc
Confidence            37899999999999999987755

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=96.98  E-value=0.00065  Score=47.26  Aligned_cols=23  Identities=26%  Similarity=0.251  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      .++|+|+.|+|||||++.|.+..
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEEccCCCccccceeeecccc
Confidence            47899999999999999998754

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=96.97  E-value=0.02  Score=41.42  Aligned_cols=84  Identities=13%  Similarity=0.013  Sum_probs=51.5

Q ss_pred             EEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHH
Q 028686           53 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG  132 (205)
Q Consensus        53 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~  132 (205)
                      .+.++|+|+.....  ....+..+|.+|++.+.+. .++..+..+++.+....  .....+++|+.+-..   ....+..
T Consensus        64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~---~~~~~~~  135 (179)
T cd02036          64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEI-SSLRDADRVKGLLEALG--IKVVGVIVNRVRPDM---VEGGDMV  135 (179)
T ss_pred             CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHcC--CceEEEEEeCCcccc---cchhhHH
Confidence            58999999764332  3344678999999987764 35666666666665532  234678899988532   1222223


Q ss_pred             HHHHHHhCCcEE
Q 028686          133 QALADEYGIKFF  144 (205)
Q Consensus       133 ~~~~~~~~~~~~  144 (205)
                      ..+.+.++.+++
T Consensus       136 ~~~~~~~~~~v~  147 (179)
T cd02036         136 EDIEEILGVPLL  147 (179)
T ss_pred             HHHHHHhCCCEE
Confidence            455555666644

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=96.97  E-value=0.0062  Score=47.99  Aligned_cols=100  Identities=15%  Similarity=0.147  Sum_probs=57.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChh--------------------
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE--------------------   63 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------------------   63 (205)
                      -+++++|++|.|||+++++|........ .+ ..            ..+.+.....|...                    
T Consensus        62 p~lLivG~snnGKT~Ii~rF~~~hp~~~-d~-~~------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~  127 (302)
T PF05621_consen   62 PNLLIVGDSNNGKTMIIERFRRLHPPQS-DE-DA------------ERIPVVYVQMPPEPDERRFYSAILEALGAPYRPR  127 (302)
T ss_pred             CceEEecCCCCcHHHHHHHHHHHCCCCC-CC-CC------------ccccEEEEecCCCCChHHHHHHHHHHhCcccCCC
Confidence            3579999999999999999998653221 11 00            11233444444311                    


Q ss_pred             ----hhhhhhhhhccCCcEEEEEEeCCC---hhHHHHHHHHHHHHHhhcC-CCCcEEEEEeC
Q 028686           64 ----RFRTITTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHAS-DNVNKVLVGNK  117 (205)
Q Consensus        64 ----~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK  117 (205)
                          .........++...+=++++|--.   .-+....+..++.++...+ -++|++.+|+.
T Consensus       128 ~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~  189 (302)
T PF05621_consen  128 DRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR  189 (302)
T ss_pred             CCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence                112223345666778888887432   1123334445555554433 56999999876

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=96.95  E-value=0.00028  Score=57.07  Aligned_cols=83  Identities=16%  Similarity=0.132  Sum_probs=48.0

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh--hhhhhhccCCcEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR--TITTAYYRGAMGI   79 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~~~~~~~~~~d~~   79 (205)
                      ..|.|.++|.|++||||+||.|-..++-.. .|..|.+-....+.+-   -.+.++|+||-.-..  +-....+   -++
T Consensus       306 kqISVGfiGYPNvGKSSiINTLR~KkVCkv-APIpGETKVWQYItLm---krIfLIDcPGvVyps~dset~ivL---kGv  378 (572)
T KOG2423|consen  306 KQISVGFIGYPNVGKSSIINTLRKKKVCKV-APIPGETKVWQYITLM---KRIFLIDCPGVVYPSSDSETDIVL---KGV  378 (572)
T ss_pred             cceeeeeecCCCCchHHHHHHHhhcccccc-cCCCCcchHHHHHHHH---hceeEecCCCccCCCCCchHHHHh---hce
Confidence            468899999999999999999987764321 2222311111111111   246788999964211  2222232   245


Q ss_pred             EEEEeCCChhHH
Q 028686           80 LLVYDVTDESSF   91 (205)
Q Consensus        80 i~v~d~~~~~s~   91 (205)
                      +=|=.+.+++.+
T Consensus       379 VRVenv~~pe~y  390 (572)
T KOG2423|consen  379 VRVENVKNPEDY  390 (572)
T ss_pred             eeeeecCCHHHH
Confidence            566666776543

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=96.93  E-value=0.00069  Score=46.31  Aligned_cols=21  Identities=14%  Similarity=0.096  Sum_probs=19.1

Q ss_pred             EEEECCCCCcHHHHHHHHHhC
Q 028686            6 RIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~   26 (205)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999764

...

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.92  E-value=0.0054  Score=45.71  Aligned_cols=22  Identities=27%  Similarity=0.175  Sum_probs=19.6

Q ss_pred             EEEECCCCCcHHHHHHHHHhCC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      |+|.|++||||||+++.++..-
T Consensus         4 ilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999987654

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK14532 adenylate kinase; Provisional

Probab=96.92  E-value=0.00084  Score=49.49  Aligned_cols=23  Identities=22%  Similarity=0.267  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      ++|+++|+|||||||+..+|...
T Consensus         1 ~~i~~~G~pGsGKsT~a~~la~~   23 (188)
T PRK14532          1 MNLILFGPPAAGKGTQAKRLVEE   23 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999999753

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=96.91  E-value=0.0008  Score=49.16  Aligned_cols=22  Identities=27%  Similarity=0.206  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .++|+|++||||||+++.|...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998775

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=96.90  E-value=0.005  Score=42.78  Aligned_cols=23  Identities=22%  Similarity=0.289  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      -|++.|+.|+|||||++.+...-
T Consensus        24 ~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        24 VVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            47899999999999999998763

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PHA00729 NTP-binding motif containing protein

Probab=96.90  E-value=0.0011  Score=50.26  Aligned_cols=25  Identities=24%  Similarity=0.466  Sum_probs=21.8

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhC
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      ...+|++.|.||+|||+|..++...
T Consensus        16 ~f~nIlItG~pGvGKT~LA~aLa~~   40 (226)
T PHA00729         16 GFVSAVIFGKQGSGKTTYALKVARD   40 (226)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHH
Confidence            3478999999999999999998764

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=96.89  E-value=0.00091  Score=46.83  Aligned_cols=21  Identities=38%  Similarity=0.485  Sum_probs=19.3

Q ss_pred             EEEECCCCCcHHHHHHHHHhC
Q 028686            6 RIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~   26 (205)
                      |+|+|++|||||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999875

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=96.89  E-value=0.00092  Score=49.28  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      .++|+|++|||||||++.|....
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            58999999999999999996653

>PRK05480 uridine/cytidine kinase; Provisional

Probab=96.88  E-value=0.0011  Score=49.72  Aligned_cols=25  Identities=12%  Similarity=0.057  Sum_probs=22.0

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhC
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      ..+.|+|.|++|||||||++.|...
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3578999999999999999999764

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=96.88  E-value=0.0011  Score=48.12  Aligned_cols=24  Identities=25%  Similarity=0.300  Sum_probs=20.9

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhC
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      ..-+.|+|.+|||||||+++++..
T Consensus         6 ~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          6 IPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             ceEEEEECCCCChHHHHHHHHHHH
Confidence            445799999999999999999865

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=96.88  E-value=0.00097  Score=46.87  Aligned_cols=22  Identities=14%  Similarity=0.202  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .|.|+|+.|+|||||+..|++.
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999775

>PRK13949 shikimate kinase; Provisional

Probab=96.87  E-value=0.001  Score=48.36  Aligned_cols=22  Identities=18%  Similarity=0.105  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      +|+|+|++||||||+...|...
T Consensus         3 ~I~liG~~GsGKstl~~~La~~   24 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARE   24 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7899999999999999988754

>PTZ00301 uridine kinase; Provisional

Probab=96.87  E-value=0.0012  Score=49.78  Aligned_cols=25  Identities=24%  Similarity=0.127  Sum_probs=21.6

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHh
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      |..+-|+|.|.+|||||||.+.|..
T Consensus         1 ~~~~iIgIaG~SgSGKTTla~~l~~   25 (210)
T PTZ00301          1 MPCTVIGISGASGSGKSSLSTNIVS   25 (210)
T ss_pred             CCCEEEEEECCCcCCHHHHHHHHHH
Confidence            6678899999999999999987743

>PRK00625 shikimate kinase; Provisional

Probab=96.86  E-value=0.001  Score=48.48  Aligned_cols=23  Identities=13%  Similarity=0.023  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      ++|+++|.+||||||+.+.|...
T Consensus         1 ~~I~LiG~pGsGKTT~~k~La~~   23 (173)
T PRK00625          1 MQIFLCGLPTVGKTSFGKALAKF   23 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            36999999999999999998653

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.85  E-value=0.00099  Score=44.41  Aligned_cols=20  Identities=25%  Similarity=0.305  Sum_probs=18.2

Q ss_pred             EEEEECCCCCcHHHHHHHHH
Q 028686            5 LRIYFERGGVGKSCLLLRFS   24 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~   24 (205)
                      .++++|++|+|||||++.+.
T Consensus        17 ~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          17 GVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEcCCCCCHHHHHHHhh
Confidence            47899999999999999985

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=96.85  E-value=0.0088  Score=46.70  Aligned_cols=84  Identities=20%  Similarity=0.194  Sum_probs=43.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCc-ccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTSF-ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      .|+|.|++|+||||+++.++..-..... .-++.   .+.++.+.+. ..+.+..-.| ..+.......++..--+|++-
T Consensus        82 lilisG~tGSGKTT~l~all~~i~~~~~~iitiE---dp~E~~~~~~-~q~~v~~~~~-~~~~~~l~~~lR~~PD~i~vg  156 (264)
T cd01129          82 IILVTGPTGSGKTTTLYSALSELNTPEKNIITVE---DPVEYQIPGI-NQVQVNEKAG-LTFARGLRAILRQDPDIIMVG  156 (264)
T ss_pred             EEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEEC---CCceecCCCc-eEEEeCCcCC-cCHHHHHHHHhccCCCEEEec
Confidence            3789999999999999998765422110 01110   0111222221 1222211112 234444555555433466777


Q ss_pred             eCCChhHHHH
Q 028686           84 DVTDESSFNN   93 (205)
Q Consensus        84 d~~~~~s~~~   93 (205)
                      .+.+++++..
T Consensus       157 EiR~~e~a~~  166 (264)
T cd01129         157 EIRDAETAEI  166 (264)
T ss_pred             cCCCHHHHHH
Confidence            7888776543

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=96.84  E-value=0.02  Score=45.28  Aligned_cols=20  Identities=35%  Similarity=0.351  Sum_probs=18.3

Q ss_pred             EEEEECCCCCcHHHHHHHHH
Q 028686            5 LRIYFERGGVGKSCLLLRFS   24 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~   24 (205)
                      .|+|.|.+||||||+++.|.
T Consensus         8 ~i~i~G~~GsGKtt~~~~l~   27 (288)
T PRK05416          8 LVIVTGLSGAGKSVALRALE   27 (288)
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            47899999999999999994

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=96.84  E-value=0.0012  Score=53.03  Aligned_cols=22  Identities=27%  Similarity=0.335  Sum_probs=20.1

Q ss_pred             EEEECCCCCcHHHHHHHHHhCC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      ++++|++|||||||++.+.+-.
T Consensus        32 ~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6899999999999999998864

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=96.83  E-value=0.0011  Score=48.34  Aligned_cols=23  Identities=26%  Similarity=0.265  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      .++|+|++|+|||||+|.+.+=.
T Consensus        27 ~vAi~GpSGaGKSTLLnLIAGF~   49 (231)
T COG3840          27 IVAILGPSGAGKSTLLNLIAGFE   49 (231)
T ss_pred             EEEEECCCCccHHHHHHHHHhcc
Confidence            57999999999999999987743

>KOG3929 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.81  E-value=0.0012  Score=50.54  Aligned_cols=142  Identities=18%  Similarity=0.287  Sum_probs=77.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECC--EEEEEEEEeCCChhhhhhhhhhhccC----Cc
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG--KRIKLQIWDTAGQERFRTITTAYYRG----AM   77 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~----~d   77 (205)
                      .-|++.|..  |+|++|++.....- ....|+...+|..-. ...+  ..--..+|+.+|......+..-.+..    .-
T Consensus        46 ~~I~~~Gn~--~~tt~I~~~FdR~e-~~~~ptlaLEYtygR-R~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~~~  121 (363)
T KOG3929|consen   46 FFIGSKGNG--GKTTIILRCFDRDE-PPKPPTLALEYTYGR-RAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLRTF  121 (363)
T ss_pred             eEEEEecCC--ceeEeehhhcCccc-CCCCCceeeeeehhh-hccCCCchhHHHHHHhcCCccHHHHhcCcccccchhhh
Confidence            456777744  45899998877653 233455555554322 2222  22346899999876655554433332    22


Q ss_pred             EEEEEEeCCChhHH-HHHHHHHHHH--------------------------Hhh----------c-CCCCcEEEEEeCCC
Q 028686           78 GILLVYDVTDESSF-NNIRNWIRNI--------------------------EQH----------A-SDNVNKVLVGNKAD  119 (205)
Q Consensus        78 ~~i~v~d~~~~~s~-~~~~~~~~~i--------------------------~~~----------~-~~~~piiiv~nK~D  119 (205)
                      .+|++.|+++++.| ..+...++.+                          ...          . .--+|++||+.|+|
T Consensus       122 slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgsKYD  201 (363)
T KOG3929|consen  122 SLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGSKYD  201 (363)
T ss_pred             hheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEeccchh
Confidence            57888999987643 1111111111                          110          0 01379999999999


Q ss_pred             CCCCCCccCHHH----HHHHHHHhCCcEEEEcCC
Q 028686          120 MDESKRAVPTSK----GQALADEYGIKFFETSAK  149 (205)
Q Consensus       120 l~~~~~~~~~~~----~~~~~~~~~~~~~~~Sa~  149 (205)
                      .-..-......+    .+.++..+|..+...|++
T Consensus       202 vFq~FesekRkH~C~~LRf~Ah~yGaaLlmfSsk  235 (363)
T KOG3929|consen  202 VFQDFESEKRKHICKTLRFVAHYYGAALLMFSSK  235 (363)
T ss_pred             hhccccHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence            743222222222    344556677766667776

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.80  E-value=0.0012  Score=46.15  Aligned_cols=22  Identities=18%  Similarity=0.185  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .|+++|++|+|||+|++.+...
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~   22 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAAL   22 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            3799999999999999998764

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>TIGR03263 guanyl_kin guanylate kinase

Probab=96.80  E-value=0.0011  Score=48.43  Aligned_cols=22  Identities=32%  Similarity=0.400  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .|+|+|++|||||||++.|...
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            4799999999999999999875

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=96.79  E-value=0.0011  Score=49.25  Aligned_cols=21  Identities=14%  Similarity=0.069  Sum_probs=19.2

Q ss_pred             EEEECCCCCcHHHHHHHHHhC
Q 028686            6 RIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~   26 (205)
                      |+|.|++|||||||++.|.+.
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999999774

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=96.79  E-value=0.0011  Score=48.63  Aligned_cols=21  Identities=14%  Similarity=0.196  Sum_probs=18.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHh
Q 028686            5 LRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~   25 (205)
                      .|+++|.+||||||+.+.|..
T Consensus         5 ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         5 IIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999973

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK02496 adk adenylate kinase; Provisional

Probab=96.79  E-value=0.0013  Score=48.26  Aligned_cols=22  Identities=18%  Similarity=0.324  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      .+|+|+|+|||||||+.+.|..
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~   23 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAE   23 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999999865

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=96.78  E-value=0.0073  Score=48.44  Aligned_cols=24  Identities=21%  Similarity=0.090  Sum_probs=21.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      .+|+|.|.+|||||||++.|+..-
T Consensus       145 ~nilI~G~tGSGKTTll~aL~~~i  168 (323)
T PRK13833        145 LNIVISGGTGSGKTTLANAVIAEI  168 (323)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            578999999999999999998753

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=96.77  E-value=0.0013  Score=50.36  Aligned_cols=24  Identities=17%  Similarity=0.196  Sum_probs=21.7

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhC
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .+|++|+|.+|||||+|+..|+..
T Consensus        13 ~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   13 PFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHh
Confidence            489999999999999999998765

This is thought to be an ATPase involved in viral DNA packaging [].

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=96.76  E-value=0.0011  Score=48.93  Aligned_cols=22  Identities=18%  Similarity=0.211  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      +|+|+|+|||||||+.+.|...
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~   22 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKK   22 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999764

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>TIGR00235 udk uridine kinase

Probab=96.76  E-value=0.0012  Score=49.48  Aligned_cols=23  Identities=13%  Similarity=0.143  Sum_probs=20.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .-|+|.|++|||||||++.|.+.
T Consensus         7 ~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         7 IIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            56899999999999999999764

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK10646 ADP-binding protein; Provisional

Probab=96.74  E-value=0.013  Score=41.67  Aligned_cols=21  Identities=19%  Similarity=0.271  Sum_probs=19.1

Q ss_pred             EEEECCCCCcHHHHHHHHHhC
Q 028686            6 RIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~   26 (205)
                      |++-|+-|+|||||++.++..
T Consensus        31 i~L~GdLGaGKTtf~rgl~~~   51 (153)
T PRK10646         31 IYLYGDLGAGKTTFSRGFLQA   51 (153)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            688999999999999999765

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=96.74  E-value=0.0011  Score=46.55  Aligned_cols=24  Identities=25%  Similarity=0.166  Sum_probs=21.6

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHh
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      ...+|+|.|-||+|||||..++..
T Consensus         6 ~~PNILvtGTPG~GKstl~~~lae   29 (176)
T KOG3347|consen    6 ERPNILVTGTPGTGKSTLAERLAE   29 (176)
T ss_pred             cCCCEEEeCCCCCCchhHHHHHHH
Confidence            467899999999999999999974

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=96.74  E-value=0.01  Score=49.53  Aligned_cols=62  Identities=19%  Similarity=0.246  Sum_probs=38.5

Q ss_pred             EEeCCC-hhhhhhhhhhhccCCcEEEEEEe-CCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 028686           56 IWDTAG-QERFRTITTAYYRGAMGILLVYD-VTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD  119 (205)
Q Consensus        56 i~D~~g-~~~~~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D  119 (205)
                      ++|.+- ..+.-.+....+++++.+|+  | .+.-=+..++..++..+.+....+..+|++-.|.+
T Consensus       138 V~dLsVG~qQRVEIlKaLyr~a~iLIL--DEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~  201 (501)
T COG3845         138 VADLSVGEQQRVEILKALYRGARLLIL--DEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK  201 (501)
T ss_pred             eecCCcchhHHHHHHHHHhcCCCEEEE--cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH
Confidence            445442 22334666777888885443  3 22222445666677777777767888888888865

>PRK06547 hypothetical protein; Provisional

Probab=96.73  E-value=0.0018  Score=47.19  Aligned_cols=25  Identities=20%  Similarity=0.197  Sum_probs=21.5

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhC
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      ....|+|.|.+||||||+.+.|...
T Consensus        14 ~~~~i~i~G~~GsGKTt~a~~l~~~   38 (172)
T PRK06547         14 GMITVLIDGRSGSGKTTLAGALAAR   38 (172)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3567888899999999999999764

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=96.73  E-value=0.0016  Score=47.43  Aligned_cols=24  Identities=17%  Similarity=0.056  Sum_probs=21.1

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhC
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .-+|+++|++|+||||+...|...
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~   27 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQ   27 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHH
Confidence            357999999999999999999764

>PRK04040 adenylate kinase; Provisional

Probab=96.73  E-value=0.0016  Score=48.21  Aligned_cols=24  Identities=21%  Similarity=0.254  Sum_probs=20.9

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhC
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      ...|+|.|.||+||||+++.|...
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~   25 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEK   25 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHH
Confidence            357899999999999999998664

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=96.73  E-value=0.0082  Score=48.59  Aligned_cols=24  Identities=17%  Similarity=0.202  Sum_probs=21.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      .+|+|.|+.|||||||++.|+..-
T Consensus       163 ~nilI~G~tGSGKTTll~aLl~~i  186 (344)
T PRK13851        163 LTMLLCGPTGSGKTTMSKTLISAI  186 (344)
T ss_pred             CeEEEECCCCccHHHHHHHHHccc
Confidence            579999999999999999998754

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.73  E-value=0.0013  Score=48.54  Aligned_cols=21  Identities=24%  Similarity=0.286  Sum_probs=19.0

Q ss_pred             EEEECCCCCcHHHHHHHHHhC
Q 028686            6 RIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~   26 (205)
                      ++++|++|||||||+|.+.+-
T Consensus        34 vv~lGpSGcGKTTLLnl~AGf   54 (259)
T COG4525          34 VVVLGPSGCGKTTLLNLIAGF   54 (259)
T ss_pred             EEEEcCCCccHHHHHHHHhcC
Confidence            689999999999999988764

>PRK04195 replication factor C large subunit; Provisional

Probab=96.73  E-value=0.026  Score=47.96  Aligned_cols=23  Identities=22%  Similarity=0.384  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      .++|.|++|+||||+++.|.+.-
T Consensus        41 ~lLL~GppG~GKTtla~ala~el   63 (482)
T PRK04195         41 ALLLYGPPGVGKTSLAHALANDY   63 (482)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHc
Confidence            47899999999999999998753

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=96.71  E-value=0.0057  Score=49.91  Aligned_cols=130  Identities=21%  Similarity=0.247  Sum_probs=73.8

Q ss_pred             EEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDV   85 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   85 (205)
                      |.++|..|||||||+.-|.+--     .|..|      .+.++|..+     |--..++|+.+....+.+-+.+==.+..
T Consensus       352 vFliG~NGsGKST~~~LLtGL~-----~PqsG------~I~ldg~pV-----~~e~ledYR~LfSavFsDyhLF~~ll~~  415 (546)
T COG4615         352 VFLIGGNGSGKSTLAMLLTGLY-----QPQSG------EILLDGKPV-----SAEQLEDYRKLFSAVFSDYHLFDQLLGP  415 (546)
T ss_pred             EEEECCCCCcHHHHHHHHhccc-----CCCCC------ceeECCccC-----CCCCHHHHHHHHHHHhhhHhhhHhhhCC
Confidence            5789999999999999888743     33333      223444222     3334467888887777544433223444


Q ss_pred             CChhHHHHHHHHHHHHHhhcC----------------------------CCCcEEEEE-eCCCCCCCCCccCHHHHHHHH
Q 028686           86 TDESSFNNIRNWIRNIEQHAS----------------------------DNVNKVLVG-NKADMDESKRAVPTSKGQALA  136 (205)
Q Consensus        86 ~~~~s~~~~~~~~~~i~~~~~----------------------------~~~piiiv~-nK~Dl~~~~~~~~~~~~~~~~  136 (205)
                      ....+...+..|++.+.-...                            .+.||+|.- .-.|..+.-+.+-+.......
T Consensus       416 e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~L  495 (546)
T COG4615         416 EGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLL  495 (546)
T ss_pred             ccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHH
Confidence            444566778888888742211                            145555553 335543333333344444455


Q ss_pred             HHhCCcEEEEcCCCC
Q 028686          137 DEYGIKFFETSAKTN  151 (205)
Q Consensus       137 ~~~~~~~~~~Sa~~~  151 (205)
                      ++.|-.+|-+|-.+.
T Consensus       496 K~qGKTI~aIsHDd~  510 (546)
T COG4615         496 KEQGKTIFAISHDDH  510 (546)
T ss_pred             HHhCCeEEEEecCch
Confidence            666666666654433

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=96.71  E-value=0.0085  Score=42.21  Aligned_cols=22  Identities=23%  Similarity=0.300  Sum_probs=19.3

Q ss_pred             EEEECCCCCcHHHHHHHHHhCC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      |++-|+-|+|||||++.+..+-
T Consensus        28 v~L~GdLGAGKTtf~rgi~~~L   49 (149)
T COG0802          28 VLLSGDLGAGKTTLVRGIAKGL   49 (149)
T ss_pred             EEEEcCCcCChHHHHHHHHHHc
Confidence            6778999999999999997654

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.70  E-value=0.0016  Score=47.66  Aligned_cols=21  Identities=29%  Similarity=0.154  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHh
Q 028686            5 LRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~   25 (205)
                      .++|+|+.|+|||||++.+..
T Consensus        23 ~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          23 LVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            579999999999999998863

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	205
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		2e-54
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		2e-54
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		1e-47
4fmc_B	171	Espg-Rab1 Complex Length = 171		2e-47
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		2e-47
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		2e-47
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		2e-47
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		5e-47
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		1e-46
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		1e-46
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		1e-46
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		2e-46
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		2e-46
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		5e-45
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		5e-45
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		6e-45
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		2e-43
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		3e-43
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		2e-40
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		2e-40
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		3e-40
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		4e-39
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		6e-38
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		2e-37
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		2e-37
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		2e-36
4fmc_F	117	Espg-Rab1 Complex Length = 117		4e-36
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		9e-36
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		2e-35
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		3e-35
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		2e-33
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		3e-33
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		4e-33
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		1e-32
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		1e-32
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		2e-32
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		2e-32
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		3e-32
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		3e-32
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		3e-32
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		4e-32
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		4e-32
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		1e-31
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		2e-31
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		2e-30
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		2e-30
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		3e-30
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		3e-30
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		3e-30
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		3e-30
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		3e-30
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		3e-30
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		4e-30
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		2e-29
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		2e-29
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		2e-29
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		3e-29
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		3e-29
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		6e-29
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		8e-29
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		3e-28
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		3e-28
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		3e-28
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		9e-28
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		2e-27
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		2e-27
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		2e-27
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		2e-27
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		4e-27
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		6e-27
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-26
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		5e-26
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		5e-26
2efc_B	181	Ara7-GdpATVPS9A Length = 181		6e-26
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		6e-26
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		6e-26
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		8e-26
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		6e-25
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		1e-24
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		1e-24
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		4e-24
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		7e-24
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		3e-23
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		1e-22
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		2e-22
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		3e-22
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		4e-22
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		6e-22
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		7e-22
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		7e-22
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		8e-22
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		1e-21
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		2e-21
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		2e-21
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		3e-21
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		4e-21
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		4e-21
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		6e-21
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		1e-20
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		1e-20
1vg1_A	185	Gdp-bound Rab7 Length = 185		2e-20
4q21_A	189	Molecular Switch For Signal Transduction: Structura		3e-20
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		3e-20
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		5e-20
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		5e-20
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		5e-20
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		4e-19
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		4e-19
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		4e-19
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		5e-19
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		5e-19
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		5e-19
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		5e-19
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		5e-19
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		6e-19
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		6e-19
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		6e-19
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		7e-19
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		7e-19
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		7e-19
1wq1_R	166	Ras-Rasgap Complex Length = 166		7e-19
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		7e-19
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		7e-19
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		7e-19
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		7e-19
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		7e-19
6q21_A	171	Molecular Switch For Signal Transduction: Structura		8e-19
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		8e-19
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		8e-19
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-18
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		1e-18
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		1e-18
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		1e-18
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		2e-18
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		2e-18
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-18
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-18
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-18
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-18
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		2e-18
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		2e-18
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		4e-18
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		4e-18
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		5e-18
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		5e-18
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		5e-18
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		5e-18
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		6e-18
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		6e-18
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		6e-18
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		8e-18
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		8e-18
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		9e-18
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		1e-17
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		2e-17
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		2e-17
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		2e-17
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		3e-17
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		2e-16
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		4e-15
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		5e-15
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		6e-15
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		6e-15
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		6e-15
1byu_A	216	Canine Gdp-Ran Length = 216		6e-15
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		7e-15
2bku_A	177	Kap95p:rangtp Complex Length = 177		7e-15
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		7e-15
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		9e-15
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		1e-14
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		2e-14
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		3e-14
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		4e-14
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		4e-14
3icq_B	171	Karyopherin Nuclear State Length = 171		4e-14
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		4e-14
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		5e-14
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		5e-14
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		5e-14
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		5e-14
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		5e-14
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		7e-14
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		7e-14
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		2e-13
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		3e-13
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		4e-13
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		5e-13
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		5e-13
1s1c_A	183	Crystal Structure Of The Complex Between The Human		5e-13
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		5e-13
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		5e-13
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		5e-13
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		5e-13
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		6e-13
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		6e-13
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		6e-13
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		6e-13
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		6e-13
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		6e-13
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		8e-13
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		9e-13
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		1e-12
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		1e-12
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		2e-12
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		3e-12
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		3e-12
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		3e-12
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		6e-12
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		7e-12
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		7e-12
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		8e-12
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		8e-12
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		8e-12
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		8e-12
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		8e-12
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		8e-12
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		9e-12
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		9e-12
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		1e-11
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		1e-11
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		1e-11
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		1e-11
1mh1_A	186	Small G-Protein Length = 186		1e-11
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		1e-11
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		2e-11
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		2e-11
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		2e-11
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		3e-11
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		4e-11
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		4e-11
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		4e-11
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		5e-11
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		5e-11
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		5e-11
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		5e-11
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		6e-11
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		7e-11
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		1e-10
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		2e-10
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		2e-10
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		2e-10
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		2e-10
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		2e-10
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		2e-10
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		3e-10
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		5e-10
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		6e-10
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		6e-10
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		9e-10
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		2e-09
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		3e-09
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		3e-09
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		5e-09
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		5e-09
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		1e-08
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		1e-08
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		1e-08
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		2e-08
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		2e-08
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		2e-08
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		2e-08
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		2e-08
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		2e-08
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		2e-08
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		2e-08
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		2e-08
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		2e-08
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		2e-08
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		2e-08
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		3e-08
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		3e-08
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		3e-08
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		3e-08
2kb0_A	178	Cdc42(T35a) Length = 178		3e-08
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		4e-08
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		1e-07
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		1e-07
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		2e-07
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		2e-07
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		3e-07
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		6e-07
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		2e-06
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		2e-06
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		3e-06
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		6e-06
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		6e-06
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		7e-06
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		1e-05
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		2e-05
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		2e-05
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		4e-05
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		6e-05
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		1e-04
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		1e-04
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		2e-04
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		2e-04
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		2e-04
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		2e-04
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		3e-04
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		3e-04
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		3e-04
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		3e-04
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		4e-04
3ihw_A	184	Crystal Structure Of The Ras-Like Domain Of Centg3		7e-04

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  208 bits (529), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 100/157 (63%), Positives = 122/157 (77%), Gaps = 1/157 (0%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGK+C+L R                  KIRTIELDGKRIKLQIWDTAGQERFRTITTAY
Sbjct: 18  GVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 77
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK D+++ KR V   +G
Sbjct: 78  YRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERG 136
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
           + LA +YGIKF ETSAK N+NVE  FF++ARDIK ++
Sbjct: 137 EKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 173

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  207 bits (528), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 100/157 (63%), Positives = 122/157 (77%), Gaps = 1/157 (0%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGK+C+L R                  KIRTIELDGKRIKLQIWDTAGQERFRTITTAY
Sbjct: 16  GVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 75
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK D+++ KR V   +G
Sbjct: 76  YRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERG 134
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
           + LA +YGIKF ETSAK N+NVE  FF++ARDIK ++
Sbjct: 135 EKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 171

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  186 bits (471), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 94/172 (54%), Positives = 120/172 (69%), Gaps = 3/172 (1%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++Y
Sbjct: 26  GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 85
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+  +K+ V  +  
Sbjct: 86  YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTA 144
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLAD--TDSRSEPSTIK 182
           +  AD  GI F ETSAK   NVEQ F ++A +IK+R+    T   +E S +K
Sbjct: 145 KEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVK 196

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  185 bits (469), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 90/157 (57%), Positives = 114/157 (72%), Gaps = 1/157 (0%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++Y
Sbjct: 16  GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 75
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+  +K+ V  +  
Sbjct: 76  YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTA 134
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
           +  AD  GI F ETSAK   NVEQ F ++A +IK+R+
Sbjct: 135 KEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  185 bits (469), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 90/157 (57%), Positives = 114/157 (72%), Gaps = 1/157 (0%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++Y
Sbjct: 16  GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 75
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+  +K+ V  +  
Sbjct: 76  YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTA 134
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
           +  AD  GI F ETSAK   NVEQ F ++A +IK+R+
Sbjct: 135 KEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  185 bits (469), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 90/157 (57%), Positives = 114/157 (72%), Gaps = 1/157 (0%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++Y
Sbjct: 9   GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 68
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+  +K+ V  +  
Sbjct: 69  YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTA 127
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
           +  AD  GI F ETSAK   NVEQ F ++A +IK+R+
Sbjct: 128 KEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 164

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  184 bits (468), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 90/158 (56%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++Y
Sbjct: 35  GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 94
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+  +K+ V  +  
Sbjct: 95  YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTA 153
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA 170
           +  AD  GI F ETSAK   NVEQ F ++A +IK+R+ 
Sbjct: 154 KEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 191

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  183 bits (465), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 89/157 (56%), Positives = 114/157 (72%), Gaps = 1/157 (0%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGK+CLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++Y
Sbjct: 26  GVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 85
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+  +K+ V  +  
Sbjct: 86  YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTA 144
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
           +  AD  GI F ETSAK   NVEQ F ++A +IK+R+
Sbjct: 145 KEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 181

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  182 bits (462), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 88/157 (56%), Positives = 114/157 (72%), Gaps = 1/157 (0%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++Y
Sbjct: 19  GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 78
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA GI++VYDVTD+ S+ N++ W++ I+++AS+NVNK+LVGNK+D+  +K+ V  +  
Sbjct: 79  YRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL-TTKKVVDNTTA 137
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
           +  AD  GI F ETSAK   NVEQ F ++A +IK+R+
Sbjct: 138 KEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 174

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  182 bits (462), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 88/157 (56%), Positives = 114/157 (72%), Gaps = 1/157 (0%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++Y
Sbjct: 19  GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 78
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA GI++VYDVTD+ S+ N++ W++ I+++AS+NVNK+LVGNK+D+  +K+ V  +  
Sbjct: 79  YRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL-TTKKVVDNTTA 137
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
           +  AD  GI F ETSAK   NVEQ F ++A +IK+R+
Sbjct: 138 KEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 174

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  182 bits (462), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 90/157 (57%), Positives = 115/157 (73%), Gaps = 1/157 (0%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLLLR                  KIRTI L+ K +KLQIWDTAGQERFRTIT++Y
Sbjct: 19  GVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQERFRTITSSY 78
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA GI++VYDVTD  SF+N++ WI+ I+++A +NVNK+LVGNK D+  SKR V + +G
Sbjct: 79  YRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDL-VSKRVVTSDEG 137
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
           + LAD +GIKF ETSAK   NVEQ F ++A +IK+R+
Sbjct: 138 RELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRV 174

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  181 bits (460), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 90/156 (57%), Positives = 112/156 (71%), Gaps = 1/156 (0%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++Y
Sbjct: 43  GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 102
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+  +K+ V  +  
Sbjct: 103 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTA 161
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
           +  AD  GI F ETSAK   NVEQ F + A +IK+R
Sbjct: 162 KEFADSLGIPFLETSAKNATNVEQSFXTXAAEIKKR 197

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  181 bits (459), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 89/157 (56%), Positives = 113/157 (71%), Gaps = 1/157 (0%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++Y
Sbjct: 18  GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 77
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVG K D+  +K+ V  +  
Sbjct: 78  YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDL-TTKKVVDYTTA 136
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
           +  AD  GI F ETSAK   NVEQ F ++A +IK+R+
Sbjct: 137 KEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 173

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  177 bits (448), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 82/157 (52%), Positives = 114/157 (72%), Gaps = 2/157 (1%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLL+R                  KI+T++++GK++KLQIWDTAGQERFRTITTAY
Sbjct: 13  GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAY 72
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGAMGI+LVYD+TDE +F NI+ W + + +HA+D    +LVGNK+DM+   R V   +G
Sbjct: 73  YRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQG 130
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
           +ALA E GI F E+SAK + NV ++FF++A+ I++++
Sbjct: 131 EALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  177 bits (448), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 82/157 (52%), Positives = 114/157 (72%), Gaps = 2/157 (1%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLL+R                  KI+T++++GK++KLQ+WDTAGQERFRTITTAY
Sbjct: 30  GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAY 89
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGAMGI+LVYDVTDE +F NI+ W + + +HA+D    +LVGNK+DM+   R V   +G
Sbjct: 90  YRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQG 147
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
           +ALA E GI F E+SAK + NV ++FF++A+ I++++
Sbjct: 148 EALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 184

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  176 bits (447), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 82/157 (52%), Positives = 114/157 (72%), Gaps = 2/157 (1%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLL+R                  KI+T++++GK++KLQ+WDTAGQERFRTITTAY
Sbjct: 17  GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAY 76
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGAMGI+LVYDVTDE +F NI+ W + + +HA+D    +LVGNK+DM+   R V   +G
Sbjct: 77  YRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQG 134
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
           +ALA E GI F E+SAK + NV ++FF++A+ I++++
Sbjct: 135 EALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 171

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  171 bits (433), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 80/157 (50%), Positives = 112/157 (71%), Gaps = 2/157 (1%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLL+R                  KI+T++++GK++KLQIWDTAGQERFRTITTAY
Sbjct: 13  GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAY 72
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA GI+LVYD+TDE +F NI+ W + + +HA+D    +LVGNK+D +   R V   +G
Sbjct: 73  YRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXE--TRVVTADQG 130
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
           +ALA E GI F E+SAK + NV ++FF++A+ I++++
Sbjct: 131 EALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  171 bits (432), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 80/157 (50%), Positives = 112/157 (71%), Gaps = 2/157 (1%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLL+R                  KI+T++++GK++KLQ+WDTAGQERFRTITTAY
Sbjct: 13  GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAY 72
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA GI+LVYDVTDE +F NI+ W + + +HA+D    +LVGNK+D +   R V   +G
Sbjct: 73  YRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXE--TRVVTADQG 130
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
           +ALA E GI F E+SAK + NV ++FF++A+ I++++
Sbjct: 131 EALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  162 bits (409), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/158 (50%), Positives = 107/158 (67%), Gaps = 1/158 (0%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLLLR                  KI+T+ELDGK +KLQIWDTAGQERFRTIT++Y
Sbjct: 18  GVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSY 77
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRG+ GI++VYDVTD+ SFN ++ W++ I+++A+  V K+LVGNK D+ + KR V     
Sbjct: 78  YRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL-KDKRVVEYDVA 136
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA 170
           +  AD   + F ETSA  + NVE  F ++AR IK+ ++
Sbjct: 137 KEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMS 174

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  162 bits (409), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/158 (50%), Positives = 107/158 (67%), Gaps = 1/158 (0%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLLLR                  KI+T+ELDGK +KLQIWDTAGQERFRTIT++Y
Sbjct: 18  GVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSY 77
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRG+ GI++VYDVTD+ SFN ++ W++ I+++A+  V K+LVGNK D+ + KR V     
Sbjct: 78  YRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL-KDKRVVEYDVA 136
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA 170
           +  AD   + F ETSA  + NVE  F ++AR IK+ ++
Sbjct: 137 KEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMS 174

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  160 bits (406), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 79/155 (50%), Positives = 105/155 (67%), Gaps = 1/155 (0%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLLLR                  KI+T+ELDGK +KLQIWDTAGQERFRTIT++Y
Sbjct: 31  GVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSY 90
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRG+ GI++VYDVTD+ SFN ++ W++ I+++A+  V K+LVGNK D+ + KR V     
Sbjct: 91  YRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL-KDKRVVEYDVA 149
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
           +  AD   + F ETSA  + NVE  F ++AR IK+
Sbjct: 150 KEFADANKMPFLETSALDSTNVEDAFLTMARQIKE 184

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  157 bits (397), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 76/159 (47%), Positives = 104/159 (65%), Gaps = 1/159 (0%)
Query: 14  VGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 73
           VGK+  L R                  K++T+    KR+KLQIWDTAGQER+RTITTAYY
Sbjct: 34  VGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYY 93
Query: 74  RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ 133
           RGAMG +L+YD+T+E SFN +++W   I+ ++ DN   +LVGNK DM+E +R VPT KGQ
Sbjct: 94  RGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE-ERVVPTEKGQ 152
Query: 134 ALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADT 172
            LA++ G  FFE SAK N++V Q F  +   I  +++D+
Sbjct: 153 LLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDS 191

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  153 bits (387), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 75/157 (47%), Positives = 106/157 (67%), Gaps = 1/157 (0%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLLL+                    R + +DGK+IKLQIWDTAGQE FR+IT +Y
Sbjct: 31  GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSY 90
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA G LLVYD+T   +FN++ +W+ +  QH+S N+  +L+GNK+D+ ES+R V   +G
Sbjct: 91  YRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDL-ESRRDVKREEG 149
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
           +A A E+G+ F ETSAKT  NVE+ F + A++I +++
Sbjct: 150 EAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKI 186

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  152 bits (383), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 75/156 (48%), Positives = 104/156 (66%), Gaps = 1/156 (0%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLLL+                    R I +DGK+IKLQIWDTAGQE FR+IT +Y
Sbjct: 20  GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSY 79
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA G LLVYD+T   +FN++  W+ +  QH++ N+  +L+GNK+D+ ES+R V   +G
Sbjct: 80  YRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDL-ESRREVKKEEG 138
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
           +A A E+G+ F ETSAKT  NVE+ F + A++I ++
Sbjct: 139 EAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEK 174

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  151 bits (382), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/147 (50%), Positives = 97/147 (65%), Gaps = 1/147 (0%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
             VGK+  L R                  K++TI  + KRIKLQIWDTAGQER+RTITTA
Sbjct: 14  SSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTA 73
Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   +LVGNK DM E +R V + +
Sbjct: 74  YYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM-EDERVVSSER 132
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVF 158
           G+ LAD  G +FFE SAK N+NV+Q F
Sbjct: 133 GRQLADHLGFEFFEASAKDNINVKQTF 159

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 72/145 (49%), Positives = 95/145 (65%), Gaps = 1/145 (0%)
Query: 14  VGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 73
           VGK+  L R                  K++T+    KRIKLQIWDTAGQER+RTITTAYY
Sbjct: 33  VGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYY 92
Query: 74  RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ 133
           RGAMG LL+YD+ ++ SF  +++W   I+ ++ DN   +LVGNK D+ E +R VP   G+
Sbjct: 93  RGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDL-EDERVVPAEDGR 151
Query: 134 ALADEYGIKFFETSAKTNLNVEQVF 158
            LAD+ G +FFE SAK N+NV+QVF
Sbjct: 152 RLADDLGFEFFEASAKENINVKQVF 176

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score =  147 bits (371), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 69/108 (63%), Positives = 84/108 (77%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++Y
Sbjct: 8   GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 67
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM 120
           YRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+
Sbjct: 68  YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  146 bits (368), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 74/150 (49%), Positives = 98/150 (65%), Gaps = 2/150 (1%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKS LLLR                  KIRT+E++G+++KLQIWDTAGQERFRTIT+ Y
Sbjct: 19  GVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTY 78
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRG  G+++VYDVT   SF N++ W+  I Q+  D+V ++LVGNK D D  ++ V T   
Sbjct: 79  YRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKND-DPERKVVETEDA 136
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIA 162
              A + GI+ FETSAK N+NVE++F  I 
Sbjct: 137 YKFAGQMGIQLFETSAKENVNVEEMFNCIT 166

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  145 bits (365), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 75/175 (42%), Positives = 106/175 (60%), Gaps = 1/175 (0%)
Query: 14  VGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 73
           VGK+  L R                  K++TI  + KRIKLQIWDTAG ER+RTITTAYY
Sbjct: 19  VGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYY 78
Query: 74  RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ 133
           RGA G +L YD+T+E SFN +++W   I+ ++ DN   +LVGNK D  E +R V + +G+
Sbjct: 79  RGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDX-EDERVVSSERGR 137
Query: 134 ALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQ 188
            LAD  G +FFE SAK N+NV+Q F  +   I ++ +++   ++P+     Q  Q
Sbjct: 138 QLADHLGFEFFEASAKDNINVKQTFERLVDVICEKXSESLDTADPAVTGAKQGPQ 192

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 71/157 (45%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXX-XXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GVGK+CLL+R                   + + +++DG ++KLQ+WDTAGQERFR++T A
Sbjct: 20  GVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHA 79
Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YYR A  +LL+YDVT+++SF+NI+ W+  I ++A  +V  +L+GNK D    +R V    
Sbjct: 80  YYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVD-SAHERVVKRED 138
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
           G+ LA EYG+ F ETSAKT LNV+  F +IA+++K+R
Sbjct: 139 GEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRR 175

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  138 bits (347), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/153 (45%), Positives = 95/153 (62%), Gaps = 1/153 (0%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKS LL R                    R+I++DGK IK QIWDTAGQER+R IT+AY
Sbjct: 39  GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAY 98
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+    RAVPT + 
Sbjct: 99  YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEA 157
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
           +A A++ G+ F ETSA  + NVE  F +I  +I
Sbjct: 158 RAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  137 bits (346), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 70/153 (45%), Positives = 95/153 (62%), Gaps = 1/153 (0%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKS LL R                    R+I++DGK IK QIWDTAGQER+R IT+AY
Sbjct: 30  GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAY 89
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+    RAVPT + 
Sbjct: 90  YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEA 148
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
           +A A++ G+ F ETSA  + NVE  F +I  +I
Sbjct: 149 RAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 181

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  137 bits (345), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 67/158 (42%), Positives = 104/158 (65%), Gaps = 2/158 (1%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGK+ L+ R                  KI+T+EL GK+I+LQIWDTAGQERF +IT+AY
Sbjct: 36  GVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAY 95
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YR A GI+LVYD+T + +F+++  W++ I+++AS++   +LVGNK D  E+ R +   +G
Sbjct: 96  YRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC-ETDREITRQQG 154
Query: 133 QALADEY-GIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
           +  A +  G++F E SAK N NV+++F  +  DI +++
Sbjct: 155 EKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  136 bits (342), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 72/171 (42%), Positives = 103/171 (60%), Gaps = 6/171 (3%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
            GVGKS LL R                    R+I++DGK IK QIWDTAGQER+R IT+A
Sbjct: 14  SGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSA 73
Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+    RAVPT +
Sbjct: 74  YYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDE 132
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDI-----KQRLADTDSRSE 177
            +A A++  + F ETSA  + NVE+ F +I  +I     ++++AD  +  E
Sbjct: 133 ARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDE 183

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  136 bits (342), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 70/158 (44%), Positives = 98/158 (62%), Gaps = 1/158 (0%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKS LL R                    RT+E++GKRIK QIWDTAGQER+R IT+AY
Sbjct: 23  GVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAY 82
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA+G L+VYD++  SS+ N  +W+  + ++A DNV   L+GNK+D+    RAVPT + 
Sbjct: 83  YRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDL-AHLRAVPTEES 141
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA 170
           +  A E  + F ETSA  + NV++ F  +   I Q+++
Sbjct: 142 KTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVS 179

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  135 bits (339), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/153 (45%), Positives = 94/153 (61%), Gaps = 1/153 (0%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKS LL R                    R+I++DGK IK QIWDTAG ER+R IT+AY
Sbjct: 39  GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAY 98
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+    RAVPT + 
Sbjct: 99  YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEA 157
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
           +A A++ G+ F ETSA  + NVE  F +I  +I
Sbjct: 158 RAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  135 bits (339), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/153 (45%), Positives = 94/153 (61%), Gaps = 1/153 (0%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKS LL R                    R+I++DGK IK QIWDTAG ER+R IT+AY
Sbjct: 18  GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAY 77
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+    RAVPT + 
Sbjct: 78  YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEA 136
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
           +A A++ G+ F ETSA  + NVE  F +I  +I
Sbjct: 137 RAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 169

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  134 bits (337), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 100/161 (62%), Gaps = 2/161 (1%)
Query: 3   FLLRIYF-ERGGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 61
           FL +I      GVGK+CL+ R                   I+T+E++G+++KLQIWDTAG
Sbjct: 25  FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAG 84
Query: 62  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 121
           QERFR+IT +YYR A  ++L YD+T E SF  +  W+R IEQ+AS+ V  VLVGNK D+ 
Sbjct: 85  QERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA 144
Query: 122 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162
           E +R V   + +  ++   + + ETSAK + NVE++F  +A
Sbjct: 145 E-RREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLA 184

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  134 bits (337), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 100/156 (64%), Gaps = 2/156 (1%)
Query: 14  VGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 73
           VGK+C++ R                   ++T+E+ GKR+KLQIWDTAGQERFRTIT +YY
Sbjct: 40  VGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYY 99
Query: 74  RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ 133
           R A G +L YD+T  SSF ++ +WI ++ ++A  N+ ++L+GNK+D+ E  R V  ++ Q
Sbjct: 100 RSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE-LREVSLAEAQ 158
Query: 134 ALADEYGIKF-FETSAKTNLNVEQVFFSIARDIKQR 168
           +LA+ Y I    ETSAK + NVE+ F  +A ++  R
Sbjct: 159 SLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMR 194

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  134 bits (337), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 69/153 (45%), Positives = 93/153 (60%), Gaps = 1/153 (0%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKS LL R                    R+I++DGK IK QIWDTAG ER+R IT+AY
Sbjct: 15  GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAY 74
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA+G LLVYD+    ++ N+  W++ +  HA  N+   LVGNK+D+    RAVPT + 
Sbjct: 75  YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDL-RHLRAVPTDEA 133
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
           +A A++ G+ F ETSA  + NVE  F +I  +I
Sbjct: 134 RAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 166

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  134 bits (337), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 69/153 (45%), Positives = 93/153 (60%), Gaps = 1/153 (0%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKS LL R                    R+I++DGK IK QIWDTAG ER+R IT+AY
Sbjct: 21  GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAY 80
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA+G LLVYD+    ++ N+  W++ +  HA  N+   LVGNK+D+    RAVPT + 
Sbjct: 81  YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDL-RHLRAVPTDEA 139
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
           +A A++ G+ F ETSA  + NVE  F +I  +I
Sbjct: 140 RAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  134 bits (337), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/155 (43%), Positives = 94/155 (60%), Gaps = 1/155 (0%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLL +                    R IE+ G++IKLQIWDTAGQERFR +T +Y
Sbjct: 25  GVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSY 84
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA G L+VYD+T  S++N++ +W+ +     + N   +L+GNKAD+ E++R V   + 
Sbjct: 85  YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADL-EAQRDVTYEEA 143
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
           +  A+E G+ F E SAKT  NVE  F   A+ I Q
Sbjct: 144 KQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score =  132 bits (332), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/162 (43%), Positives = 96/162 (59%), Gaps = 5/162 (3%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
             VGKS  L+R                  +++T+ +DG+R  LQ+WDTAGQERFR+I  +
Sbjct: 37  AAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKS 96
Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM-----DESKRA 126
           Y+R A G+LL+YDVT E SF NIR W+  IE  A + V  +LVGNKAD+      E ++ 
Sbjct: 97  YFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKC 156
Query: 127 VPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
           VP   G+ LA  YG  F ETSAK   N+ +    +AR++K+R
Sbjct: 157 VPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKR 198

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/157 (42%), Positives = 94/157 (59%), Gaps = 1/157 (0%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLL +                    R IE+ G++IKLQIWDTAGQ RFR +T +Y
Sbjct: 40  GVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGRFRAVTRSY 99
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA G L+VYD+T  S++N++ +W+ +     + N   +L+GNKAD+ E++R V   + 
Sbjct: 100 YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADL-EAQRDVTYEEA 158
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
           +  A+E G+ F E SAKT  NVE  F   A+ I Q +
Sbjct: 159 KQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNI 195

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/157 (39%), Positives = 95/157 (60%), Gaps = 1/157 (0%)
Query: 11  RGGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITT 70
              VGKS L+LR                    +T+ LD   +K +IWDTAGQER+ ++  
Sbjct: 14  ESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAP 73
Query: 71  AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS 130
            YYRGA   ++VYD+T+E SF   +NW++ +++ AS N+   L GNKAD+  +KRAV   
Sbjct: 74  MYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-ANKRAVDFQ 132
Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
           + Q+ AD+  + F ETSAKT++NV ++F +IA+ + +
Sbjct: 133 EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/155 (40%), Positives = 92/155 (59%), Gaps = 1/155 (0%)
Query: 11  RGGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITT 70
              VGKS L+LR                    +T+ LD   +K +IWDTAGQER+ ++  
Sbjct: 13  ESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAP 72
Query: 71  AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS 130
            YYRGA   ++VYD+T+  +F   +NW++ +++ AS N+   L GNKAD+  SKRAV   
Sbjct: 73  MYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL-ASKRAVEFQ 131
Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
           + QA AD+  + F ETSAKT +NV ++F +IA+ +
Sbjct: 132 EAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  128 bits (321), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 62/157 (39%), Positives = 95/157 (60%), Gaps = 1/157 (0%)
Query: 11  RGGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITT 70
              VGKS L+LR                    +T+ LD   +K +IWDTAGQER+ ++  
Sbjct: 15  ESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAP 74
Query: 71  AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS 130
            YYRGA   ++VYD+T+E SF   +NW++ +++ AS N+   L GNKAD+  +KRAV   
Sbjct: 75  MYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-ANKRAVDFQ 133
Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
           + Q+ AD+  + F ETSAKT++NV ++F +IA+ + +
Sbjct: 134 EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 170

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 62/154 (40%), Positives = 95/154 (61%), Gaps = 1/154 (0%)
Query: 14  VGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 73
           VGKS L+LR                    +T+ LD   +K +IWDTAGQER+ ++   YY
Sbjct: 17  VGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 76
Query: 74  RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ 133
           RGA   ++VYD+T+E SF   +NW++ +++ AS N+   L GNKAD+  +KRAV   + Q
Sbjct: 77  RGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-ANKRAVDFQEAQ 135
Query: 134 ALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
           + AD+  + F ETSAKT++NV ++F +IA+ + +
Sbjct: 136 SYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 62/154 (40%), Positives = 95/154 (61%), Gaps = 1/154 (0%)
Query: 14  VGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 73
           VGKS L+LR                    +T+ LD   +K +IWDTAGQER+ ++   YY
Sbjct: 17  VGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 76
Query: 74  RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ 133
           RGA   ++VYD+T+E SF   +NW++ +++ AS N+   L GNKAD+  +KRAV   + Q
Sbjct: 77  RGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-ANKRAVDFQEAQ 135
Query: 134 ALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
           + AD+  + F ETSAKT++NV ++F +IA+ + +
Sbjct: 136 SYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 62/154 (40%), Positives = 95/154 (61%), Gaps = 1/154 (0%)
Query: 14  VGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 73
           VGKS L+LR                    +T+ LD   +K +IWDTAGQER+ ++   YY
Sbjct: 17  VGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 76
Query: 74  RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ 133
           RGA   ++VYD+T+E SF   +NW++ +++ AS N+   L GNKAD+  +KRAV   + Q
Sbjct: 77  RGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-ANKRAVDFQEAQ 135
Query: 134 ALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
           + AD+  + F ETSAKT++NV ++F +IA+ + +
Sbjct: 136 SYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 62/155 (40%), Positives = 92/155 (59%), Gaps = 1/155 (0%)
Query: 11  RGGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITT 70
              VGKS L+LR                    +T+ LD   +K +IWDTAGQER+ ++  
Sbjct: 11  ESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAP 70
Query: 71  AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS 130
            YYRGA   ++VYD+T+  +F   +NW++ +++ AS N+   L GNKAD+  SKRAV   
Sbjct: 71  MYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL-ASKRAVEFQ 129
Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
           + QA AD+  + F ETSAKT +NV ++F +IA+ +
Sbjct: 130 EAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 62/154 (40%), Positives = 95/154 (61%), Gaps = 1/154 (0%)
Query: 14  VGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 73
           VGKS L+LR                    +T+ LD   +K +IWDTAGQER+ ++   YY
Sbjct: 17  VGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 76
Query: 74  RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ 133
           RGA   ++VYD+T+E SF   +NW++ +++ AS N+   L GNKAD+  +KRAV   + Q
Sbjct: 77  RGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-ANKRAVDFQEAQ 135
Query: 134 ALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
           + AD+  + F ETSAKT++NV ++F +IA+ + +
Sbjct: 136 SYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  127 bits (320), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 62/154 (40%), Positives = 95/154 (61%), Gaps = 1/154 (0%)
Query: 14  VGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 73
           VGKS L+LR                    +T+ LD   +K +IWDTAGQER+ ++   YY
Sbjct: 17  VGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 76
Query: 74  RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ 133
           RGA   ++VYD+T+E SF   +NW++ +++ AS N+   L GNKAD+  +KRAV   + Q
Sbjct: 77  RGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-ANKRAVDFQEAQ 135
Query: 134 ALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
           + AD+  + F ETSAKT++NV ++F +IA+ + +
Sbjct: 136 SYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/157 (39%), Positives = 94/157 (59%), Gaps = 1/157 (0%)
Query: 11  RGGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITT 70
              VGKS L+LR                    +T+ LD   +K +IWDTAGQER+ ++  
Sbjct: 15  ESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAP 74
Query: 71  AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS 130
            YYRGA   ++VYD+T+E SF   +NW++ +++ AS N+   L GNKAD+  +KRAV   
Sbjct: 75  XYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-ANKRAVDFQ 133
Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
           + Q+ AD+  + F ETSAKT+ NV ++F +IA+ + +
Sbjct: 134 EAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKLPK 170

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 94/157 (59%), Gaps = 1/157 (0%)
Query: 11  RGGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITT 70
              VGKS L+LR                    +T+ LD   +K +IWDTAG ER+ ++  
Sbjct: 13  ESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSLAP 72
Query: 71  AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS 130
            YYRGA   ++VYD+T+E SF   +NW++ +++ AS N+   L GNKAD+  +KRAV   
Sbjct: 73  MYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-ANKRAVDFQ 131
Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
           + Q+ AD+  + F ETSAKT++NV ++F +IA+ + +
Sbjct: 132 EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 168

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 60/122 (49%), Positives = 87/122 (71%), Gaps = 2/122 (1%)
Query: 49  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SD 107
           G+RI LQ+WDTAG ERFR++TTA++R AMG LL++D+T+E SF N+RNWI  ++ HA S+
Sbjct: 67  GQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSE 126
Query: 108 NVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
           N + VL GNK+D+ E +RAV   + + LA++YGI +FETSA    N+      +   I +
Sbjct: 127 NPDIVLCGNKSDL-EDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMK 185
Query: 168 RL 169
           R+
Sbjct: 186 RM 187

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/155 (39%), Positives = 91/155 (58%), Gaps = 1/155 (0%)
Query: 11  RGGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITT 70
              VGKS L+LR                    +T+ LD   +K +IWDTAG ER+ ++  
Sbjct: 13  ESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSLAP 72
Query: 71  AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS 130
            YYRGA   ++VYD+T+  +F   +NW++ +++ AS N+   L GNKAD+  SKRAV   
Sbjct: 73  MYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL-ASKRAVEFQ 131
Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
           + QA AD+  + F ETSAKT +NV ++F +IA+ +
Sbjct: 132 EAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  124 bits (311), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 66/146 (45%), Positives = 90/146 (61%), Gaps = 1/146 (0%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKS LL R                    RTIE++ K+IK QIWDTAG ER+R IT+AY
Sbjct: 20  GVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLERYRAITSAY 79
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA+G L+VYD++  SS+ N  +W+  + ++A DNV   L+GNK+D+    RAVPT + 
Sbjct: 80  YRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDL-AHLRAVPTDEA 138
Query: 133 QALADEYGIKFFETSAKTNLNVEQVF 158
           +  A E  + F ETSA  + NV++ F
Sbjct: 139 KNFAMENQMLFTETSALNSDNVDKAF 164

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  123 bits (309), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 66/158 (41%), Positives = 88/158 (55%), Gaps = 1/158 (0%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
            G GKSCLL +                    + I + GK +KLQIWDTAGQERFR++T +
Sbjct: 19  AGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRS 78
Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YYRGA G LLVYD+T   ++N + NW+ +    AS N+  +L GNK D+D + R V   +
Sbjct: 79  YYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD-ADREVTFLE 137
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
               A E  + F ETSA T  NVE+ F   AR I  ++
Sbjct: 138 ASRFAQENELMFLETSALTGENVEEAFVQCARKILNKI 175

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  123 bits (308), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 88/157 (56%), Gaps = 1/157 (0%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           G GKSCLL +                    R + + GK +KLQIWDTAGQERFR++T +Y
Sbjct: 35  GTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSY 94
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA G LLVYD+T   ++N++  W+ +    AS N+  +L GNK D+D  +R V   + 
Sbjct: 95  YRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD-PEREVTFLEA 153
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
              A E  + F ETSA T  NVE+ F   AR I  ++
Sbjct: 154 SRFAQENELMFLETSALTGENVEEAFLKCARTILNKI 190

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score =  121 bits (303), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 62/153 (40%), Positives = 100/153 (65%), Gaps = 3/153 (1%)
Query: 51  RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNV 109
           ++ LQ+WDTAG ERFR++TTA++R AMG LL++D+T + SF N+RNW+  ++ +A  +N 
Sbjct: 69  KVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 128
Query: 110 NKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
           + VL+GNKAD+ + +R V   + + LA++YGI +FETSA T  NVE+   ++   I +R+
Sbjct: 129 DIVLIGNKADLPD-QREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRM 187
Query: 170 ADTDSRSE-PSTIKINQPDQAGGVGQAAQKSAC 201
                +++ P T+      +  G   A +K AC
Sbjct: 188 EKCVEKTQVPDTVNGGNSGKLDGEKPAEKKCAC 220

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score =  121 bits (303), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/133 (44%), Positives = 94/133 (70%), Gaps = 3/133 (2%)
Query: 51  RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNV 109
           ++ LQ+WDTAGQERFR++TTA++R AMG LL++D+T + SF N+RNW+  ++ +A  +N 
Sbjct: 83  KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 142
Query: 110 NKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
           + VL+GNKAD+ + +R V   + + LAD+YGI +FETSA T  NVE+   ++   I +R+
Sbjct: 143 DIVLIGNKADLPD-QREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRM 201
Query: 170 ADTDSRSE-PSTI 181
                +++ P T+
Sbjct: 202 EQCVEKTQIPDTV 214

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  121 bits (303), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 65/154 (42%), Positives = 86/154 (55%), Gaps = 1/154 (0%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
            G GKSCLL +                    + I + GK +KLQIWDTAGQERFR++T +
Sbjct: 20  AGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRS 79
Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YYRGA G LLVYD+T   ++N + NW+ +    AS N+  +L GNK D+D + R V   +
Sbjct: 80  YYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD-ADREVTFLE 138
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
               A E  + F ETSA T  +VE+ F   AR I
Sbjct: 139 ASRFAQENELMFLETSALTGEDVEEAFVQCARKI 172

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  119 bits (299), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 95/169 (56%), Gaps = 9/169 (5%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
            VGKS L+LR                    +++ LD   +K +IWDTAGQER+ ++   Y
Sbjct: 18  AVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMY 77
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA   ++VYD+T++ +F   + W++ +++ AS ++   L GNKAD+  +KR V   + 
Sbjct: 78  YRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADL-ANKRMVEYEEA 136
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTI 181
           QA AD+  + F ETSAKT +NV  +F +IA+ +         +SEP  +
Sbjct: 137 QAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL--------PKSEPQNL 177

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 94/160 (58%), Gaps = 6/160 (3%)
Query: 14  VGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFR-TITTAY 72
           VGK+CL  R                  + R +++DG+RIK+Q+WDTAGQERFR ++   Y
Sbjct: 31  VGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHY 90
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSK 131
           YR    ++ VYD+T+ +SF+++  WI   +QH  ++++ ++LVGNK D+  S   VPT  
Sbjct: 91  YRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL-RSAIQVPTDL 149
Query: 132 GQALADEYGIKFFETSAKT---NLNVEQVFFSIARDIKQR 168
            Q  AD + +  FETSAK    N +VE +F ++A  +K  
Sbjct: 150 AQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSH 189

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 92/158 (58%), Gaps = 1/158 (0%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGK+ LL R                    RT+ L    +K QIWDTAG ER+R IT+AY
Sbjct: 35  GVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAY 94
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA+G LLV+D+T   ++  +  W++ +  HA   +  +LVGNK+D+ ++ R VPT + 
Sbjct: 95  YRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA-REVPTEEA 153
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA 170
           +  A+  G+ F ETSA  + NVE  F ++ ++I  +++
Sbjct: 154 RMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVS 191

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  118 bits (295), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 64/154 (41%), Positives = 85/154 (55%), Gaps = 1/154 (0%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
            G GKSCLL +                    + I + GK +KLQIWDTAG ERFR++T +
Sbjct: 17  AGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLERFRSVTRS 76
Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YYRGA G LLVYD+T   ++N + NW+ +    AS N+  +L GNK D+D + R V   +
Sbjct: 77  YYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD-ADREVTFLE 135
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
               A E  + F ETSA T  +VE+ F   AR I
Sbjct: 136 ASRFAQENELMFLETSALTGEDVEEAFVQCARKI 169

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  118 bits (295), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 92/158 (58%), Gaps = 1/158 (0%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGK+ LL R                    RT+ L    +K QIWDTAG ER+R IT+AY
Sbjct: 20  GVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAY 79
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA+G LLV+D+T   ++  +  W++ +  HA   +  +LVGNK+D+ ++ R VPT + 
Sbjct: 80  YRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA-REVPTEEA 138
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA 170
           +  A+  G+ F ETSA  + NVE  F ++ ++I  +++
Sbjct: 139 RMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVS 176

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  117 bits (293), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 66/156 (42%), Positives = 89/156 (57%), Gaps = 3/156 (1%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKS LLLR                  K++TI +DG + KL IWDTAGQERFRT+T +Y
Sbjct: 25  GVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSY 84
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN-VNKVLVGNKADMDESKRAVPTSK 131
           YRGA G++LVYDVT   +F  + NW+  +E + + N +   LVGNK  +D+  R V  ++
Sbjct: 85  YRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNK--IDKENREVDRNE 142
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
           G   A ++   F E SAKT   V+  F  +   I Q
Sbjct: 143 GLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQ 178

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score =  117 bits (292), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 92/160 (57%), Gaps = 6/160 (3%)
Query: 14  VGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFR-TITTAY 72
           VGK+CL  R                  + R +++DG+RIK+Q+WDTAGQERFR ++   Y
Sbjct: 40  VGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHY 99
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSK 131
           YR    ++ VYD T+ +SF+++  WI   +QH  ++++ ++LVGNK D+  S   VPT  
Sbjct: 100 YRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDL-RSAIQVPTDL 158
Query: 132 GQALADEYGIKFFETSAKT---NLNVEQVFFSIARDIKQR 168
            Q  AD +    FETSAK    N +VE +F ++A  +K  
Sbjct: 159 AQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKLKSH 198

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score =  115 bits (289), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/133 (42%), Positives = 93/133 (69%), Gaps = 3/133 (2%)
Query: 51  RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNV 109
           ++ LQ+WDTAG ERFR++TTA++R AMG LL++D+T + SF N+RNW+  ++ +A  +N 
Sbjct: 69  KVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 128
Query: 110 NKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
           + VL+GNKAD+ + +R V   + + LA++YGI +FETSA T  NVE+   ++   I +R+
Sbjct: 129 DIVLIGNKADLPD-QREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRM 187
Query: 170 ADTDSRSE-PSTI 181
                +++ P T+
Sbjct: 188 EKCVEKTQVPDTV 200

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  114 bits (284), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 90/161 (55%), Gaps = 5/161 (3%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+ L+LR                    + + + GKR+ L IWDTAGQERF  +   
Sbjct: 29  GCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPI 88
Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YYR + G +LVYD+TDE SF  ++NW++ + +   + +   +VGNK D+ E +R V   +
Sbjct: 89  YYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL-EKERHVSIQE 147
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADT 172
            ++ A+  G K + TSAK N  +E++F     D+ +R+ +T
Sbjct: 148 AESYAESVGAKHYHTSAKQNKGIEELFL----DLCKRMIET 184

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  114 bits (284), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 90/161 (55%), Gaps = 5/161 (3%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+ L+LR                    + + + GKR+ L IWDTAGQERF  +   
Sbjct: 15  GCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPI 74
Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YYR + G +LVYD+TDE SF  ++NW++ + +   + +   +VGNK D+ E +R V   +
Sbjct: 75  YYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL-EKERHVSIQE 133
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADT 172
            ++ A+  G K + TSAK N  +E++F     D+ +R+ +T
Sbjct: 134 AESYAESVGAKHYHTSAKQNKGIEELFL----DLCKRMIET 170

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  113 bits (283), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 88/151 (58%), Gaps = 1/151 (0%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           G GKS L+LR                    +T+ ++   +K +IWDTAGQER+ ++   Y
Sbjct: 22  GAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMY 81
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA   ++V+DVT+++SF   + W++ ++   + N+   L GNK+D+ ++++ V     
Sbjct: 82  YRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARK-VTAEDA 140
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIAR 163
           Q  A E G+ F ETSAKT  NV+++F+ IAR
Sbjct: 141 QTYAQENGLFFMETSAKTATNVKEIFYEIAR 171

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  113 bits (283), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 90/161 (55%), Gaps = 5/161 (3%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+ L+LR                    + + + GKR+ L IWDTAGQERF  +   
Sbjct: 15  GCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPI 74
Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YYR + G +LVYD+TDE SF  ++NW++ + +   + +   +VGNK D+ E +R V   +
Sbjct: 75  YYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL-EKERHVSIQE 133
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADT 172
            ++ A+  G K + TSAK N  +E++F     D+ +R+ +T
Sbjct: 134 AESYAESVGAKHYHTSAKQNKGIEELFL----DLCKRMIET 170

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  113 bits (283), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 64/155 (41%), Positives = 89/155 (57%), Gaps = 2/155 (1%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIEL-DGKRIKLQIWDTAGQERFRTITT 70
            GVGKS LL R                    ++I+L + K IK QIWDTAGQER+R IT+
Sbjct: 16  SGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQERYRAITS 75
Query: 71  AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS 130
           AYYRGA+G LLVYD+T ++SF NI  W++ +  +A  N+  +LVGNK+D+ +  R +  +
Sbjct: 76  AYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDL-KHLRVINDN 134
Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
                A +  + F ETSA    NVE  F  +  +I
Sbjct: 135 DATQYAKKEKLAFIETSALEATNVELAFHQLLNEI 169

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  113 bits (282), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 60/156 (38%), Positives = 84/156 (53%), Gaps = 2/156 (1%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
             VGKS ++LR                    + + ++   +K +IWDTAGQERF ++   
Sbjct: 12  AAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPX 71
Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD--MDESKRAVPT 129
           YYR A   L+VYDVT   SF   R+W++ + + AS ++   LVGNK D   +  +R V  
Sbjct: 72  YYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAR 131
Query: 130 SKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
            +G+ LA+E G+ FFETSAKT  NV  VF  I   I
Sbjct: 132 EEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score =  110 bits (275), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 59/142 (41%), Positives = 87/142 (61%), Gaps = 9/142 (6%)
Query: 51  RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNV 109
           ++ LQ+WDTAG ERFR++TTA++R A G LL +D+T + SF N+RNW   ++ +A  +N 
Sbjct: 69  KVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENP 128
Query: 110 NKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
           + VL+GNKAD+ + +R V   + + LA++YGI +FETSA T  NVE       + ++  L
Sbjct: 129 DIVLIGNKADLPD-QREVNERQARELAEKYGIPYFETSAATGQNVE-------KSVETLL 180
Query: 170 ADTDSRSEPSTIKINQPDQAGG 191
                R E    K   PD   G
Sbjct: 181 DLIXKRXEKCVEKTQVPDTVNG 202

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/164 (40%), Positives = 90/164 (54%), Gaps = 10/164 (6%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIK-LQIWDTAGQERFRTITTA 71
           GVGK+ L+ R                    + + +DG ++  +Q+WDTAGQERF+++  A
Sbjct: 18  GVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVA 77
Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK------VLVGNKADMDESKR 125
           +YRGA   +LVYDVT+ SSF NI++W      HA  NVN       V++GNK D +ESK+
Sbjct: 78  FYRGADCCVLVYDVTNASSFENIKSWRDEFLVHA--NVNSPETFPFVILGNKIDAEESKK 135
Query: 126 AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIARDIKQR 168
            V     Q LA   G I  F TSAK  +NV+  F  IAR   Q+
Sbjct: 136 IVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 179

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 78/107 (72%), Gaps = 2/107 (1%)
Query: 51  RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNV 109
           ++ LQ+WDTAG ERFR++TTA++R A G LL +D+T + SF N+RNW   ++ +A  +N 
Sbjct: 69  KVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENP 128
Query: 110 NKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ 156
           + VL+GNKAD+ + +R V   + + LA++YGI +FETSA T  NVE+
Sbjct: 129 DIVLIGNKADLPD-QREVNERQARELAEKYGIPYFETSAATGQNVEK 174

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  107 bits (268), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 82/153 (53%), Gaps = 1/153 (0%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKS ++ R                    +T+    +  K  IWDTAGQERF ++   Y
Sbjct: 33  GVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMY 92
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRG+   ++VYD+T + SF  ++ W++ +++H  +N+   + GNK D+ +  R VP    
Sbjct: 93  YRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI-REVPLKDA 151
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
           +  A+  G    ETSAK  +N+E++F  I+R I
Sbjct: 152 KEYAESIGAIVVETSAKNAINIEELFQGISRQI 184

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  106 bits (265), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 1/153 (0%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKS ++ R                    +T++   +  K  IWDTAGQERFR +   Y
Sbjct: 15  GVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMY 74
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRG+   ++VYD+T E +F+ ++NW+R + QH   ++   + GNK D+ +  R V     
Sbjct: 75  YRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV-REVMERDA 133
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
           +  AD     F ETSAK  +N+ ++F  I+R I
Sbjct: 134 KDYADSIHAIFVETSAKNAININELFIEISRRI 166

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  104 bits (259), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 1/153 (0%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKS ++ R                    +T++   +  K  IWDTAG ERFR +   Y
Sbjct: 16  GVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMY 75
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRG+   ++VYD+T E +F+ ++NW+R + QH   ++   + GNK D+ +  R V     
Sbjct: 76  YRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV-REVMERDA 134
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
           +  AD     F ETSAK  +N+ ++F  I+R I
Sbjct: 135 KDYADSIHAIFVETSAKNAININELFIEISRRI 167

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 87/156 (55%), Gaps = 1/156 (0%)
Query: 7   IYFERGGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFR 66
           ++     VGK+ L+ R                    +T+ L+ + ++LQ+WDTAGQERFR
Sbjct: 18  VFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 77
Query: 67  TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA 126
           ++  +Y R +   ++VYD+T+ +SF+    WI ++      +V  +LVGNK D+ + KR 
Sbjct: 78  SLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD-KRQ 136
Query: 127 VPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162
           V T +G+  A E  + F ETSAK   NV+Q+F  +A
Sbjct: 137 VSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 172

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 107/197 (54%), Gaps = 12/197 (6%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
            GVGK+ L+ +                    + + +D + + +QIWDTAGQERF+++  A
Sbjct: 17  SGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVA 76
Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAV 127
           +YRGA   +LV+DVT  ++F  + +W       AS    +N   V++GNK D +   R V
Sbjct: 77  FYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDFE--NRQV 134
Query: 128 PTSKGQALA-DEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSE-PSTIKINQ 185
            T + QA    +  I +FETSAK  +NVEQ F +IAR+  ++  + +  +E P  IK+++
Sbjct: 135 ATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDK 194
Query: 186 PDQAGGVGQAAQKSACC 202
            D+A    +A+ +S  C
Sbjct: 195 NDRA----KASAESCSC 207

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 108/197 (54%), Gaps = 12/197 (6%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
            GVGK+ L+ +                    + + +D + + +QIWDTAGQERF+++  A
Sbjct: 17  SGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVA 76
Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAV 127
           +YRGA   +LV+DVT  ++F  + +W       AS    +N   V++GNK D++   R V
Sbjct: 77  FYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE--NRQV 134
Query: 128 PTSKGQALA-DEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSE-PSTIKINQ 185
            T + QA    +  I +FETSAK  +NVEQ F +IAR+  ++  + +  +E P  IK+++
Sbjct: 135 ATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDK 194
Query: 186 PDQAGGVGQAAQKSACC 202
            ++A    +A+ +S  C
Sbjct: 195 NERA----KASAESCSC 207

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  100 bits (250), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 96/183 (52%), Gaps = 2/183 (1%)
Query: 7   IYFERGGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFR 66
           ++     VGK+ L+ R                    +T+ L+ + I+LQ+WDTAG ERFR
Sbjct: 17  VFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFR 76
Query: 67  TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA 126
           ++  +Y R +   ++VYD+T+ +SF     WI ++      +V  +LVGNK D+ + KR 
Sbjct: 77  SLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD-KRQ 135
Query: 127 VPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTD-SRSEPSTIKINQ 185
           V   +G+  A E  + F ETSAK   NV+Q+F  +A  +    +  D SR +   IK+ +
Sbjct: 136 VSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLEK 195
Query: 186 PDQ 188
           P +
Sbjct: 196 PQE 198

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  100 bits (249), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 1/156 (0%)
Query: 7   IYFERGGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFR 66
           ++     VGK+ L+ R                    +T+ L+ + I+LQ+WDTAGQERFR
Sbjct: 10  VFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFR 69
Query: 67  TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA 126
           ++  +Y R +   ++VYD+T+ +SF     WI ++      +V  +LVGNK D+ + KR 
Sbjct: 70  SLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD-KRQ 128
Query: 127 VPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162
           V   +G+  A E  + F ETSAK   NV+Q+F  +A
Sbjct: 129 VSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 164

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  100 bits (248), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 107/197 (54%), Gaps = 12/197 (6%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
            GVGK+ L+ +                    + + +D + + +QIWDTAG ERF+++  A
Sbjct: 17  SGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLERFQSLGVA 76
Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAV 127
           +YRGA   +LV+DVT  ++F  + +W       AS    +N   V++GNK D++   R V
Sbjct: 77  FYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE--NRQV 134
Query: 128 PTSKGQALA-DEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSE-PSTIKINQ 185
            T + QA    +  I +FETSAK  +NVEQ F +IAR+  ++  + +  +E P  IK+++
Sbjct: 135 ATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDK 194
Query: 186 PDQAGGVGQAAQKSACC 202
            D+A    +A+ +S  C
Sbjct: 195 NDRA----KASAESCSC 207

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  100 bits (248), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 86/156 (55%), Gaps = 1/156 (0%)
Query: 7   IYFERGGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFR 66
           ++     VGK+ L+ R                    +T+ L+ + ++LQ+WDTAGQERFR
Sbjct: 6   VFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 65
Query: 67  TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA 126
           ++  +Y R +   ++VYD+T+ +SF     WI ++      +V  +LVGNK D+ + KR 
Sbjct: 66  SLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLAD-KRQ 124
Query: 127 VPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162
           +   +G+  A E  + F ETSAKT  NV+Q+F  +A
Sbjct: 125 ITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVA 160

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score =  100 bits (248), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 83/159 (52%), Gaps = 7/159 (4%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L+ R                    + +E+DG  + +QIWDTAGQERFR++ T 
Sbjct: 20  GGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTP 79
Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA----SDNVNKVLVGNKADMDESKRAV 127
           +YRG+   LL + V D  SF N+ NW +    +A     ++   V++GNK D+ E  R V
Sbjct: 80  FYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDIKE--RQV 137
Query: 128 PTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIARDI 165
            T + QA   + G   +FETSAK + NV   F    R I
Sbjct: 138 STEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 99/197 (50%), Gaps = 7/197 (3%)
Query: 7   IYFERGGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFR 66
           ++     VGK+ L+ R                    +T+ L+ + ++LQ+WDTAG ERFR
Sbjct: 20  VFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFR 79
Query: 67  TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA 126
           ++  +Y R +   ++VYD+T+ +SF     WI ++      +V  +LVGNK D+ + KR 
Sbjct: 80  SLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD-KRQ 138
Query: 127 VPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTD-SRSEPSTIKINQ 185
           V   +G+  A E  + F ETSAK   NV+Q+F  +A  +    +  D SR +   IK+ +
Sbjct: 139 VSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLEK 198
Query: 186 PDQAGGVGQAAQKSACC 202
           P +     Q   +  C 
Sbjct: 199 PQE-----QPVSEGGCL 210

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 91/160 (56%), Gaps = 6/160 (3%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L L+                  + + + LDG+ +++ I DTAG E +  I   
Sbjct: 12  GGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLEDYAAIRDN 70
Query: 72  YYRGAMGILLVYDVTDESSFN---NIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP 128
           Y+R   G LLV+ +T+  SF      R  I  ++    D +  ++VGNK+D++E +R VP
Sbjct: 71  YFRSGEGFLLVFSITEHESFTATAEFREQILRVKAE-EDKIPLLVVGNKSDLEE-RRQVP 128
Query: 129 TSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
             + ++ A+E+G+++ ETSAKT  NV++VFF + R+I+ +
Sbjct: 129 VEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTK 168

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 91/160 (56%), Gaps = 6/160 (3%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L L+                  + + + LDG+ +++ I DTAG E +  I   
Sbjct: 16  GGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLEDYAAIRDN 74
Query: 72  YYRGAMGILLVYDVTDESSFN---NIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP 128
           Y+R   G LLV+ +T+  SF      R  I  ++    D +  ++VGNK+D++E +R VP
Sbjct: 75  YFRSGEGFLLVFSITEHESFTATAEFREQILRVKAE-EDKIPLLVVGNKSDLEE-RRQVP 132
Query: 129 TSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
             + ++ A+E+G+++ ETSAKT  NV++VFF + R+I+ +
Sbjct: 133 VEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTK 172

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 85/156 (54%), Gaps = 1/156 (0%)
Query: 7   IYFERGGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFR 66
           ++     VGK+ L+ R                    +T+ L+ + ++LQ+WDTAGQERFR
Sbjct: 5   VFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 64
Query: 67  TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA 126
           ++  +Y R +   ++VYD+T+ +SF     WI ++      +V  +LVGNK D+ + KR 
Sbjct: 65  SLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD-KRQ 123
Query: 127 VPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162
           V   +G+  A E  + F ETSAK   NV+Q+F  +A
Sbjct: 124 VSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 159

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 83/159 (52%), Gaps = 7/159 (4%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L+ R                    + +E+DG  + +QIWDTAGQERFR++ T 
Sbjct: 18  GGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTP 77
Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA----SDNVNKVLVGNKADMDESKRAV 127
           +YRG+   LL + V D  SF N+ NW +    +A     ++   V++GNK D+  S+R V
Sbjct: 78  FYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI--SERQV 135
Query: 128 PTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIARDI 165
            T + QA   + G   +FETSAK   NV   F    R +
Sbjct: 136 STEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 174

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 58/152 (38%), Positives = 81/152 (53%), Gaps = 7/152 (4%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L+ R                    + +E+DG  + +QIWDTAGQERFR++ T 
Sbjct: 16  GGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTP 75
Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA----SDNVNKVLVGNKADMDESKRAV 127
           +YRG+   LL + V D  SF N+ NW +    +A     ++   V++GNK D+  S+R V
Sbjct: 76  FYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI--SERQV 133
Query: 128 PTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
            T + QA   + G   +FETSAK   NV   F
Sbjct: 134 STEEAQAWCRDNGDYPYFETSAKDATNVAAAF 165

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 85/169 (50%), Gaps = 7/169 (4%)
Query: 2   LFLLRIYFERGGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 61
           L L  I    GGVGKS L+ R                    R +E+DG+ + LQIWDTAG
Sbjct: 6   LLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAG 65
Query: 62  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA----SDNVNKVLVGNK 117
           QERF+++ T +YRGA   LL + V D  SF N+ NW +    +A     ++   V++GNK
Sbjct: 66  QERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNK 125
Query: 118 ADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIARDI 165
            D ++  R V T + Q    E G   + ETSAK + NV   F    R +
Sbjct: 126 VDKED--RQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQV 172

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 91/177 (51%), Gaps = 2/177 (1%)
Query: 7   IYFERGGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFR 66
           ++     VGK+ L+ R                    +T+ L+ + ++LQ+WDTAG ERFR
Sbjct: 10  VFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFR 69
Query: 67  TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA 126
           ++  +Y R +   ++VYD+T+ +SF     WI ++      +V  +LVGNK D+ + KR 
Sbjct: 70  SLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD-KRQ 128
Query: 127 VPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKI 183
           V   +G+  A E  + F ETSAK   NV+Q+F  +A  +   +  T  RS    I I
Sbjct: 129 VSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG-MESTQDRSREDMIDI 184

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 87/158 (55%), Gaps = 3/158 (1%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L L+                  + + + LDG+ +++ I DTAGQE +  I   
Sbjct: 13  GGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIRDN 71
Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD-NVNKVLVGNKADMDESKRAVPTS 130
           Y+R   G L V+ +T+  SF    ++   I +   D NV  +LVGNK+D+ E KR V   
Sbjct: 72  YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL-EDKRQVSVE 130
Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
           + +  AD++ + + ETSAKT  NV++VFF + R+I+ R
Sbjct: 131 EAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 87/158 (55%), Gaps = 7/158 (4%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
            GVGK+ L+ +                    + + +D + + +QIWDTAGQERF+++  A
Sbjct: 17  SGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVA 76
Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAV 127
           +YRGA   +LV+DVT  ++F  + +W       AS    +N   V++GNK D++   R V
Sbjct: 77  FYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE--NRQV 134
Query: 128 PTSKGQALA-DEYGIKFFETSAKTNLNVEQVFFSIARD 164
            T + QA    +  I +FETSAK  +NVEQ F +IAR+
Sbjct: 135 ATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARN 172

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 81/149 (54%), Gaps = 13/149 (8%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQRLADTDSRSEPSTIKINQPDQAG 190
            R+I+Q              K+N PD++G
Sbjct: 160 VREIRQH----------KLRKLNPPDESG 178

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           +T+ LD   ++LQ+WDTAGQERFR++  +Y R +   ++VYD+T+  SF N   WI++I 
Sbjct: 41  KTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDIL 100
Query: 103 QHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
                +V   LVGNK D+ +  R V   +G   A EY   F ETSAK   N++ +F
Sbjct: 101 NERGKDVIIALVGNKTDLGDL-RKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLF 155

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 87/158 (55%), Gaps = 3/158 (1%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L L+                  + + + LDG+ +++ I DTAGQE +  I   
Sbjct: 27  GGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIRDN 85
Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD-NVNKVLVGNKADMDESKRAVPTS 130
           Y+R   G L V+ +T+  SF    ++   I +   D NV  +LVGNK+D+ E KR V   
Sbjct: 86  YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL-EDKRQVSVE 144
Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
           + +  A+++ + + ETSAKT  NV++VFF + R+I+ R
Sbjct: 145 EAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 182

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 87/158 (55%), Gaps = 3/158 (1%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L L+                  + + + LDG+ +++ I DTAGQE +  I   
Sbjct: 15  GGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIRDN 73
Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD-NVNKVLVGNKADMDESKRAVPTS 130
           Y+R   G L V+ +T+  SF    ++   I +   D NV  +LVGNK+D+ E KR V   
Sbjct: 74  YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL-EDKRQVSVE 132
Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
           + +  A+++ + + ETSAKT  NV++VFF + R+I+ R
Sbjct: 133 EAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 170

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 87/158 (55%), Gaps = 3/158 (1%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L L+                  + + + LDG+ +++ I DTAGQE +  I   
Sbjct: 23  GGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIRDN 81
Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD-NVNKVLVGNKADMDESKRAVPTS 130
           Y+R   G L V+ +T+  SF    ++   I +   D NV  +LVGNK+D+ E KR V   
Sbjct: 82  YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL-EDKRQVSVE 140
Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
           + +  A+++ + + ETSAKT  NV++VFF + R+I+ R
Sbjct: 141 EAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 178

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 82/157 (52%), Gaps = 4/157 (2%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKS L ++                  + + + +DG+   L I DTAGQE +  +   Y
Sbjct: 13  GVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSK 131
            R   G L V+ + +  SF +I  +   I++   SD+V  VLVGNK D+  + R V + +
Sbjct: 72  MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AARTVESRQ 129
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
            Q LA  YGI + ETSAKT   VE  F+++ R+I+Q 
Sbjct: 130 AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L L+                  + + + LDG+ +++ I DTAG E +  I   
Sbjct: 15  GGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLEDYAAIRDN 73
Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD-NVNKVLVGNKADMDESKRAVPTS 130
           Y+R   G L V+ +T+  SF    ++   I +   D NV  +LVGNK+D+ E KR V   
Sbjct: 74  YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL-EDKRQVSVE 132
Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
           + +  A+++ + + ETSAKT  NV++VFF + R+I+ R
Sbjct: 133 EAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 170

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 82/157 (52%), Gaps = 4/157 (2%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKS L ++                  + + + +DG+   L I DTAGQE +  +   Y
Sbjct: 13  GVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSK 131
            R   G L V+ + +  SF +I  +   I++   SD+V  VLVGNK D+  + R V + +
Sbjct: 72  MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AARTVESRQ 129
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
            Q LA  YGI + ETSAKT   VE  F+++ R+I+Q 
Sbjct: 130 AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 82/157 (52%), Gaps = 4/157 (2%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKS L ++                  + + + +DG+   L I DTAGQE +  +   Y
Sbjct: 13  GVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSK 131
            R   G L V+ + +  SF +I  +   I++   SD+V  VLVGNK D+  + R V + +
Sbjct: 72  MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AARTVESRQ 129
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
            Q LA  YGI + ETSAKT   VE  F+++ R+I+Q 
Sbjct: 130 AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 82/157 (52%), Gaps = 4/157 (2%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKS L ++                  + + + +DG+   L I DTAGQE +  +   Y
Sbjct: 13  GVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSK 131
            R   G L V+ + +  SF +I  +   I++   SD+V  VLVGNK D+  + R V + +
Sbjct: 72  MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AGRTVESRQ 129
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
            Q LA  YGI + ETSAKT   VE  F+++ R+I+Q 
Sbjct: 130 AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 49  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 108
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 109 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 166
Query: 162 ARDIKQR 168
            R+I+Q 
Sbjct: 167 VREIRQH 173

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 90.5 bits (223), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 74/127 (58%), Gaps = 3/127 (2%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
           +   SD+V  VLVGNK+D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKSDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 90.5 bits (223), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 48  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 107
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 108 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 165
Query: 162 ARDIKQR 168
            R+I+Q 
Sbjct: 166 VREIRQH 172

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 47  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 106
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 107 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 164
Query: 162 ARDIKQR 168
            R+I+Q 
Sbjct: 165 VREIRQH 171

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 47  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 106
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 107 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 164
Query: 162 ARDIKQR 168
            R+I+Q 
Sbjct: 165 VREIRQH 171

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 80/158 (50%), Gaps = 4/158 (2%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGKS ++ R                    R I+++ + ++L +WDTAGQE F  IT A
Sbjct: 14  GAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKA 73
Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD-MDESKRAVPTS 130
           YYRGA   +LV+  TD  SF  I +W   +     D +   LV NK D +D+S   +   
Sbjct: 74  YYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGD-IPTALVQNKIDLLDDS--CIKNE 130
Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
           + + LA    ++F+ TS K +LNV +VF  +A    Q+
Sbjct: 131 EAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 90.1 bits (222), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 90.1 bits (222), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 90.1 bits (222), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 83/157 (52%), Gaps = 4/157 (2%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKS L ++                  + + + +DG+   L I DTAGQE +  +   Y
Sbjct: 14  GVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQY 72
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSK 131
            R   G L V+ + +  SF +I ++   I++   S++V  VLVGNK+D+    R V T +
Sbjct: 73  MRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL--PSRTVDTKQ 130
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
            Q LA  YGI F ETSAKT   V+  F+++ R+I++ 
Sbjct: 131 AQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 167

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 82/157 (52%), Gaps = 4/157 (2%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKS L ++                  + + + +DG+   L I DTAGQE +  +   Y
Sbjct: 14  GVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQY 72
Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSK 131
            R   G L V+ + +  SF +I ++   I++   S++V  VLVGNK D+    R V T +
Sbjct: 73  MRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL--PSRTVDTKQ 130
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
            Q LA  YGI F ETSAKT   V+  F+++ R+I++ 
Sbjct: 131 AQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 167

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/126 (39%), Positives = 71/126 (56%), Gaps = 3/126 (2%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 60  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIK 119
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
           +   SD+V  VLVGNK D+    R V T +   LA  YGI F ETSAKT   VE  F+++
Sbjct: 120 RVKDSDDVPMVLVGNKCDL--PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTL 177
Query: 162 ARDIKQ 167
            R+I+Q
Sbjct: 178 VREIRQ 183

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
           +   SD+V  VLVGN+ D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNRCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           + + +DG+   L I DT GQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           + + +DG+   L I DTAG E +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           + + +DG+   L I DT GQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 74/127 (58%), Gaps = 3/127 (2%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I ++   I+
Sbjct: 43  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 102
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
           +   S++V  VLVGNK+D+    R V T + Q LA  YGI F ETSAKT   V+  F+++
Sbjct: 103 RVKDSEDVPMVLVGNKSDL--PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 160
Query: 162 ARDIKQR 168
            R+I++ 
Sbjct: 161 VREIRKH 167

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 74/127 (58%), Gaps = 3/127 (2%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I ++   I+
Sbjct: 43  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 102
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
           +   S++V  VLVGNK+D+    R V T + Q LA  YGI F ETSAKT   V+  F+++
Sbjct: 103 RVKDSEDVPMVLVGNKSDL--PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 160
Query: 162 ARDIKQR 168
            R+I++ 
Sbjct: 161 VREIRKH 167

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
            R+ +Q 
Sbjct: 160 VREFRQH 166

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           + + +DG+   L I DTAG+E +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           + + +DG+   L I DTAGQE    +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 47  LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HA 105
           +DG   +L I DTAGQE F  +   Y R   G LLV+ + D  SFN +      I +   
Sbjct: 52  VDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD 111
Query: 106 SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
            D+   VLVGNKAD+ ES+R VP S+  A    + + +FE SAK  LNV++ F  + R +
Sbjct: 112 RDDFPVVLVGNKADL-ESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170
Query: 166 KQ 167
           ++
Sbjct: 171 RK 172

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           + + +DG+   L I DTAG E +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 47  KQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 106
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 107 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 164
Query: 162 ARDIKQR 168
            R+I+Q 
Sbjct: 165 VREIRQH 171

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 87/156 (55%), Gaps = 4/156 (2%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L ++                  + + +E+D ++  L+I DTAG E+F  +   
Sbjct: 12  GGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTEQFTAMRDL 70
Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTS 130
           Y +   G  LVY +T +S+FN++++    I +   +D+V  +LVGNK D+ E +R V   
Sbjct: 71  YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDL-EDERVVGKE 129
Query: 131 KGQALADEY-GIKFFETSAKTNLNVEQVFFSIARDI 165
           +GQ LA ++    F E+SAK+ +NV ++F+ + R I
Sbjct: 130 QGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           + + +DG+   L I DTA QE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKXDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           + + +DG+   L I DTA QE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKXDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           + + +DG+   L I DTAG E +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           + + +DG+   L I DTAG E +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           + + +DG+   L I DTAG E +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           + + +DG+   L I DTAG E +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           + + +DG+   L I DTAG E +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           + + +DG+   L I DTAG E +  +   Y R   G L V+ + +  SF +I ++   I+
Sbjct: 60  KQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 119
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
           +   S++V  VLVGNK D+    R V T + Q LA  YGI F ETSAKT   V+  F+++
Sbjct: 120 RVKDSEDVPMVLVGNKCDL--PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 177
Query: 162 ARDIKQR 168
            R+I++ 
Sbjct: 178 VREIRKH 184

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 47  LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HA 105
           +D +  +L I DTAGQE F  +   Y R   G LLV+ VTD  SF  I  + R I +   
Sbjct: 48  IDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKD 107
Query: 106 SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
            D    +L+GNKAD+D  +R V   +GQ LA +  + + E SAK  +NV+Q F  + R I
Sbjct: 108 RDEFPMILIGNKADLD-HQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVI 166
Query: 166 KQ 167
           ++
Sbjct: 167 RK 168

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 77/125 (61%), Gaps = 3/125 (2%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           + +E+D ++  L+I DTAG E+F  +   Y +   G  LVY +T +S+FN++++    I 
Sbjct: 44  KQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL 103
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEQVFFS 160
           +   +D+V  +LVGNK D+ E +R V   +GQ LA ++    F E+SAK+ +NV ++F+ 
Sbjct: 104 RVKDTDDVPMILVGNKCDL-EDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYD 162
Query: 161 IARDI 165
           + R I
Sbjct: 163 LVRQI 167

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 87/156 (55%), Gaps = 4/156 (2%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L ++                  + + +E+D ++  L+I DTAG E+F  +   
Sbjct: 12  GGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDL 70
Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTS 130
           Y +   G  LVY +T +S+FN++++    I +   +++V  +LVGNK D+ E +R V   
Sbjct: 71  YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL-EDERVVGKE 129
Query: 131 KGQALADEY-GIKFFETSAKTNLNVEQVFFSIARDI 165
           +GQ LA ++    F E+SAK+ +NV ++F+ + R I
Sbjct: 130 QGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 87/156 (55%), Gaps = 4/156 (2%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L ++                  + + +E+D ++  L+I DTAG E+F  +   
Sbjct: 12  GGVGKSALTVQFVQGIFVDEYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDL 70
Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTS 130
           Y +   G  LVY +T +S+FN++++    I +   +++V  +LVGNK D+ E +R V   
Sbjct: 71  YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL-EDERVVGKE 129
Query: 131 KGQALADEY-GIKFFETSAKTNLNVEQVFFSIARDI 165
           +GQ LA ++    F E+SAK+ +NV ++F+ + R I
Sbjct: 130 QGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 88/164 (53%), Gaps = 9/164 (5%)
Query: 9   FERGGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTI 68
           F R GVGKS L++R                  + +   +D + + ++I DTAGQE   TI
Sbjct: 34  FGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-IDDEVVSMEILDTAGQED--TI 90
Query: 69  T-TAYYRGAMGILLVYDVTDESSFNNIRNWIRNI--EQHASDNVNKVLVGNKADMDESKR 125
               + R   G +LVYD+TD  SF  +   ++NI  E     NV  +LVGNKAD+D S R
Sbjct: 91  QREGHMRWGEGFVLVYDITDRGSFEEVLP-LKNILDEIKKPKNVTLILVGNKADLDHS-R 148
Query: 126 AVPTSKGQALADEYGIKFFETSAKTNL-NVEQVFFSIARDIKQR 168
            V T +G+ LA E    F+E SA T   N+ ++F+ + R++++R
Sbjct: 149 QVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR 192

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 73/120 (60%), Gaps = 4/120 (3%)
Query: 52  IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK 111
           IK  IWDTAGQER+ +I   YYRGA   ++V+D+++ ++ +  + W+  ++   S N   
Sbjct: 93  IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLK--ISSNYII 150
Query: 112 VLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLAD 171
           +LV NK  +D++K  V   + Q  A +  + F +TSAKT  N++ +F+ +A +I + + +
Sbjct: 151 ILVANK--IDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNIIN 208

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 4/154 (2%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GG GK+  + R                         +   IK  +WDTAGQE+F  +   
Sbjct: 24  GGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDG 83
Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YY  A   ++++DVT   ++ N+ NW R++ +   +N+  VL GNK D+ + K     +K
Sbjct: 84  YYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKV---KAK 139
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
                 +  +++++ SAK+N N E+ F  +AR +
Sbjct: 140 SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 4/154 (2%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GG GK+  + R                         +   IK  +WDTAGQE+F  +   
Sbjct: 12  GGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDG 71
Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YY  A   ++++DVT   ++ N+ NW R++ +   +N+  VL GNK D+ + K     +K
Sbjct: 72  YYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKV---KAK 127
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
                 +  +++++ SAK+N N E+ F  +AR +
Sbjct: 128 SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 161

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 4/154 (2%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GG GK+  + R                         +   IK  +WDTAGQE+F  +   
Sbjct: 19  GGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLEDG 78
Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YY  A   ++++DVT   ++ N+ NW R++ +   +N+  VL GNK D+ + K     +K
Sbjct: 79  YYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKV---KAK 134
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
                 +  +++++ SAK+N N E+ F  +AR +
Sbjct: 135 SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 4/154 (2%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GG GK+  + R                         +   IK  +WDTAGQE+F  +   
Sbjct: 24  GGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDG 83
Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YY  A   ++++DVT   ++ N+ NW R++ +   +N+  VL GNK D+ + K     +K
Sbjct: 84  YYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKV---KAK 139
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
                 +  +++++ SAK+N N E+ F  +AR +
Sbjct: 140 SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 4/154 (2%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GG GK+  + R                         +   IK  +WDTAGQE+F  +   
Sbjct: 19  GGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDG 78
Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YY  A   ++++DVT   ++ N+ NW R++ +   +N+  VL GNK D+ + K     +K
Sbjct: 79  YYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKV---KAK 134
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
                 +  +++++ SAK+N N E+ F  +AR +
Sbjct: 135 SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 4/154 (2%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GG GK+  + R                         +   IK  +WDTAGQE+F  +   
Sbjct: 19  GGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDG 78
Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YY  A   ++++DVT   ++ N+ NW R++ +   +N+  VL GNK D+ + K     +K
Sbjct: 79  YYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKV---KAK 134
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
                 +  +++++ SAK+N N E+ F  +AR +
Sbjct: 135 SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 4/154 (2%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GG GK+  + R                         +   IK  +WDTAGQE+F  +   
Sbjct: 19  GGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDG 78
Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YY  A   ++++DVT   ++ N+ NW R++ +   +N+  VL GNK D+ + K     +K
Sbjct: 79  YYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKV---KAK 134
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
                 +  +++++ SAK+N N E+ F  +AR +
Sbjct: 135 SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 66/114 (57%), Gaps = 4/114 (3%)
Query: 52  IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK 111
           IK  +WDTAGQE+F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  
Sbjct: 59  IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPI 117
Query: 112 VLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
           VL GNK D+ + K     +K      +  +++++ SAK+N N E+ F  +AR +
Sbjct: 118 VLCGNKVDIKDRKVK---AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 4/154 (2%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GG GK+  + R                         +   IK  +WDTAGQE+F  +   
Sbjct: 19  GGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDG 78
Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YY  A   ++++DVT   ++ N+ NW R++ +   +N+  VL GNK D+ + K     +K
Sbjct: 79  YYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKVK---AK 134
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
                 +  +++++ SAK+N N E+ F  +AR +
Sbjct: 135 SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 4/154 (2%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GG GK+  + R                         +   IK  +WDTAGQE+F  +   
Sbjct: 19  GGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDG 78
Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YY  A   ++ +DVT   ++ N+ NW R++ +   +N+  VL GNK D+ + K     +K
Sbjct: 79  YYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKV---KAK 134
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
                 +  +++++ SAK+N N E+ F  +AR +
Sbjct: 135 SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 4/154 (2%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GG GK+  + R                         +   IK  +WDTAGQE++  +   
Sbjct: 19  GGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKYGGLRDG 78
Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YY  A   ++++DVT   ++ N+ NW R++ +   +N+  VL GNK D+ + K     +K
Sbjct: 79  YYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKV---KAK 134
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
                 +  +++++ SAK+N N E+ F  +AR +
Sbjct: 135 SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 77/126 (61%), Gaps = 6/126 (4%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI---RNWIR 99
           + IE+D     L+I DTAG E+F ++   Y +   G +LVY + ++ SF +I   R+ I 
Sbjct: 42  KEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQII 101
Query: 100 NIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF 159
            ++++  + V  +LVGNK D++  +    +S+G+ALA+E+G  F ETSAK+   V+++F 
Sbjct: 102 RVKRY--EKVPVILVGNKVDLESEREVS-SSEGRALAEEWGCPFMETSAKSKTMVDELFA 158
Query: 160 SIARDI 165
            I R +
Sbjct: 159 EIVRQM 164

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 4/154 (2%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GG GK+  + R                     +   +   IK  +WDTAG E+F  +   
Sbjct: 21  GGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLRDG 80
Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YY  A   ++++DVT   ++ N+ NW R++ +   +N+  VL GNK D+ E K     +K
Sbjct: 81  YYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKERKV---KAK 136
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
                 +  +++++ SAK+N N E+ F  +AR +
Sbjct: 137 TITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 170

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 73/129 (56%), Gaps = 3/129 (2%)
Query: 42  IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI 101
           ++  E+D +   L + DTAGQE F  +   Y R   G L+VY VTD++SF ++  + + I
Sbjct: 56  LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLI 115
Query: 102 EQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK-TNLNVEQVFF 159
            +    ++   +LV NK D+    R V   +G+ +A +Y I + ETSAK   LNV++ F 
Sbjct: 116 LRVKDRESFPMILVANKVDL-MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH 174
Query: 160 SIARDIKQR 168
            + R I+Q+
Sbjct: 175 DLVRVIRQQ 183

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 65/114 (57%), Gaps = 4/114 (3%)
Query: 52  IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK 111
           IK  +WDTAG E+F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  
Sbjct: 54  IKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPI 112
Query: 112 VLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
           VL GNK D+ E K     +K      +  +++++ SAK+N N E+ F  +AR +
Sbjct: 113 VLCGNKVDVKERKVK---AKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 163

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 65/114 (57%), Gaps = 4/114 (3%)
Query: 52  IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK 111
           IK  +WDTAG E+F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  
Sbjct: 53  IKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPI 111
Query: 112 VLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
           VL GNK D+ E K     +K      +  +++++ SAK+N N E+ F  +AR +
Sbjct: 112 VLCGNKVDVKERKVK---AKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 162

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 73/129 (56%), Gaps = 3/129 (2%)
Query: 42  IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI 101
           ++  E+D +   L + DTAGQE F  +   Y R   G L+VY VTD++SF ++  + + I
Sbjct: 56  LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLI 115
Query: 102 EQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK-TNLNVEQVFF 159
            +    ++   +LV NK D+    R V   +G+ +A +Y I + ETSAK   LNV++ F 
Sbjct: 116 LRVKDRESFPMILVANKVDL-MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH 174
Query: 160 SIARDIKQR 168
            + R I+Q+
Sbjct: 175 DLVRVIRQQ 183

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 65/114 (57%), Gaps = 4/114 (3%)
Query: 52  IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK 111
           IK  +WDTAG E+F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  
Sbjct: 61  IKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPI 119
Query: 112 VLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
           VL GNK D+ + K     +K      +  +++++ SAK+N N E+ F  +AR +
Sbjct: 120 VLCGNKVDIKDRKVK---AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 170

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 73/154 (47%), Gaps = 4/154 (2%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GG GK+  + R                         +   IK  +WDTAG E+F  +   
Sbjct: 19  GGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDG 78
Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YY  A   ++++DVT   ++ N+ NW R++ +   +N+  VL GNK D+ + K     +K
Sbjct: 79  YYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKV---KAK 134
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
                 +  +++++ SAK+N N E+ F  +AR +
Sbjct: 135 SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 65/114 (57%), Gaps = 4/114 (3%)
Query: 52  IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK 111
           IK  +WDTAG E+F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  
Sbjct: 55  IKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPI 113
Query: 112 VLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
           VL GNK D+ + K     +K      +  +++++ SAK+N N E+ F  +AR +
Sbjct: 114 VLCGNKVDIKDRKVK---AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 164

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 73/129 (56%), Gaps = 3/129 (2%)
Query: 42  IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI 101
           ++  E+D +   L + DTAGQE F  +   Y R   G L+VY VTD++SF ++  + + I
Sbjct: 51  LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLI 110
Query: 102 EQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK-TNLNVEQVFF 159
            +    ++   +LV NK D+    R V   +G+ +A +Y I + ETSAK   LNV++ F 
Sbjct: 111 LRVKDRESFPMILVANKVDL-MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH 169
Query: 160 SIARDIKQR 168
            + R I+Q+
Sbjct: 170 DLVRVIRQQ 178

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 15/165 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G  GK+CLL+                    +  +E+DG+R++L +WDTAGQE +  +   
Sbjct: 19  GACGKTCLLI-VNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDYDRLRPL 77
Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
            Y  +  +L+ + +    S  N++  WI  +  H    V  +LVG K D+          
Sbjct: 78  SYPDSNVVLICFSIDLPDSLENVQEKWIAEV-LHFCQGVPIILVGCKVDLRNDPQTIEQL 136
Query: 121 -DESKRAVPTSKGQALADEYGIK-FFETSAKTNLNVEQVFFSIAR 163
             E ++ V + +GQ++AD+ G   ++E SAKT   V +VF +  R
Sbjct: 137 RQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAATR 181

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 71/125 (56%), Gaps = 3/125 (2%)
Query: 46  ELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-H 104
           E+D +   L + DTAGQE F  +   Y R   G L+VY VTD++SF ++  + + I +  
Sbjct: 60  EIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK 119
Query: 105 ASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK-TNLNVEQVFFSIAR 163
             ++   +LV NK D+    R V   +G+ +A +Y I + ETSAK   LNV++ F  + R
Sbjct: 120 DRESFPMILVANKVDL-MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178
Query: 164 DIKQR 168
            I+Q+
Sbjct: 179 VIRQQ 183

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 13/158 (8%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+C+L+                       + +DG  + L +WDTAGQE +  +   
Sbjct: 15  GAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPL 73
Query: 72  YYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDESKR----- 125
            YRGA   LL + +  ++S+ NI + W+  + +H +  +  VLVG K D+ + K+     
Sbjct: 74  SYRGADVFLLAFSLISKASYENIHKKWLPEL-KHYAPGIPIVLVGTKLDLRDDKQFLKDH 132
Query: 126 ----AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
               ++ T++G+ L    G +++ E S+KT  NV+ VF
Sbjct: 133 PGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 2/124 (1%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI- 101
           + + L      L + DTAGQ+ +  +  ++  G  G +LVY VT   SF  I +  + + 
Sbjct: 63  KIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLH 122
Query: 102 EQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
           E H    V  VLVGNKAD+   +R V   +G+ LA+ +G  F E+SA+ N   + +F  +
Sbjct: 123 EGHGKTRVPVVLVGNKADLS-PEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKV 181
Query: 162 ARDI 165
            ++I
Sbjct: 182 IQEI 185

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 13/158 (8%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+C+L+                       + +DG  + L +WDTAGQE +  +   
Sbjct: 15  GAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQEDYNRLRPL 73
Query: 72  YYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDESKR----- 125
            YRGA   +L + +  ++S+ N+ + WI  + +H +  V  +LVG K D+ + K+     
Sbjct: 74  SYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRDDKQFFIDH 132
Query: 126 --AVP--TSKGQALADEYGIK-FFETSAKTNLNVEQVF 158
             AVP  T++G+ L    G   + E S+KT  NV+ VF
Sbjct: 133 PGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVF 170

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 76/160 (47%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GG GK+ LL+                    +  +++ GK + L IWDTAGQ+ +  +   
Sbjct: 43  GGCGKTSLLMVFADGAFPESYTPTVFERYMV-NLQVKGKPVHLHIWDTAGQDDYDRLRPL 101
Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDESKRAV--- 127
           +Y  A  +LL +DVT  +SF+NI N W   +  H    V  ++VG K D+ + K  V   
Sbjct: 102 FYPDASVLLLCFDVTSPNSFDNIFNRWYPEV-NHFCKKVPIIVVGCKTDLRKDKSLVNKL 160
Query: 128 ------PTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 158
                 P +  +GQ +A   G + + E SA+ + NV  VF
Sbjct: 161 RRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF 200

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G  GK+CLL+                    +  IE+DGK+++L +WDTAGQE +  +   
Sbjct: 14  GACGKTCLLI-VNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPL 72
Query: 72  YYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--DESKR--- 125
            Y     IL+ + +    S  NI   W   + +H   NV  +LVGNK D+  DE  R   
Sbjct: 73  SYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTRREL 131
Query: 126 ------AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
                  V   +G+ +A+  G   + E SAKT   V +VF
Sbjct: 132 AKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G  GK+CLL+                    +  IE+DGK+++L +WDTAGQE +  +   
Sbjct: 12  GACGKTCLLI-VNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPL 70
Query: 72  YYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--DESKR--- 125
            Y     IL+ + +    S  NI   W   + +H   NV  +LVGNK D+  DE  R   
Sbjct: 71  SYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTRREL 129
Query: 126 ------AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
                  V   +G+ +A+  G   + E SAKT   V +VF
Sbjct: 130 AKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G  GK+CLL+                    +  IE+DGK+++L +WDTAGQE +  +   
Sbjct: 16  GACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPL 74
Query: 72  YYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--DESKR--- 125
            Y     IL+ + +    S  NI   W   + +H   NV  +LVGNK D+  DE  R   
Sbjct: 75  SYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTRREL 133
Query: 126 ------AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
                  V   +G+ +A+  G   + E SAKT   V +VF
Sbjct: 134 AKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G  GK+CLL+                    +  IE+DGK+++L +WDTAGQE +  +   
Sbjct: 14  GACGKTCLLI-VNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPL 72
Query: 72  YYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--DESKR--- 125
            Y     IL+ + +    S  NI   W   + +H   NV  +LVGNK D+  DE  R   
Sbjct: 73  SYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTRREL 131
Query: 126 ------AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
                  V   +G+ +A+  G   + E SAKT   V +VF
Sbjct: 132 AKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 76/170 (44%), Gaps = 15/170 (8%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G  GK+CLL+                    +  IE+DGK+++L +WDTAGQE +  +   
Sbjct: 34  GACGKTCLLI-VFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPL 92
Query: 72  YYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--DESKR--- 125
            Y     IL+ + V    S  NI   W+  + +H   NV  +LV NK D+  DE  R   
Sbjct: 93  SYPDTDVILMCFSVDSPDSLENIPEKWVPEV-KHFCPNVPIILVANKKDLRSDEHVRTEL 151
Query: 126 ------AVPTSKGQALADEY-GIKFFETSAKTNLNVEQVFFSIARDIKQR 168
                  V T  G+A+A       + E SAKT   V +VF +  R   Q+
Sbjct: 152 ARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQK 201

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G  GK+CLL+                    +  IE+DGK+++L +WDTAGQE +  +   
Sbjct: 15  GACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPL 73
Query: 72  YYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--DESKR--- 125
            Y     IL+ + +    S  NI   W   + +H   NV  +LVGNK D+  DE  R   
Sbjct: 74  SYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTRREL 132
Query: 126 ------AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
                  V   +G+ +A+  G   + E SAKT   V +VF
Sbjct: 133 AKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G  GK+CLL+                    +  IE+DGK+++L +WDTAGQE +  +   
Sbjct: 18  GACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPL 76
Query: 72  YYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--DESKR--- 125
            Y     IL+ + +    S  NI   W   + +H   NV  +LVGNK D+  DE  R   
Sbjct: 77  SYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTRREL 135
Query: 126 ------AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
                  V   +G+ +A+  G   + E SAKT   V +VF
Sbjct: 136 AKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 175

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G  GK+CLL+                    +  IE+DGK+++L +WDTAGQE +  +   
Sbjct: 12  GACGKTCLLI-VNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPL 70
Query: 72  YYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--DESKR--- 125
            Y     IL+ + +    S  NI   W   + +H   NV  +LVGNK D+  DE  R   
Sbjct: 71  SYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTRREL 129
Query: 126 ------AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
                  V   +G+ +A+  G   + E SAKT   V +VF
Sbjct: 130 AKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G  GK+CLL+                    +  IE+DGK+++L +WDTAGQE +  +   
Sbjct: 16  GACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPL 74
Query: 72  YYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--DESKR--- 125
            Y     IL+ + +    S  NI   W   + +H   NV  +LVGNK D+  DE  R   
Sbjct: 75  SYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTRREL 133
Query: 126 ------AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
                  V   +G+ +A+  G   + E SAKT   V +VF
Sbjct: 134 AKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G  GK+CLL+                    +  IE+DGK+++L +WDTAGQE +  +   
Sbjct: 17  GACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPL 75
Query: 72  YYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--DESKR--- 125
            Y     IL+ + +    S  NI   W   + +H   NV  +LVGNK D+  DE  R   
Sbjct: 76  SYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTRREL 134
Query: 126 ------AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
                  V   +G+ +A+  G   + E SAKT   V +VF
Sbjct: 135 AKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G  GK+CLL+                    +  IE+DGK+++L +WDTAGQE +  +   
Sbjct: 14  GACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPL 72
Query: 72  YYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--DESKR--- 125
            Y     IL+ + +    S  NI   W   + +H   NV  +LVGNK D+  DE  R   
Sbjct: 73  SYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTRREL 131
Query: 126 ------AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
                  V   +G+ +A+  G   + E SAKT   V +VF
Sbjct: 132 AKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G  GK+CLL+                    +  IE+DGK+++L +WDTAGQE +  +   
Sbjct: 14  GACGKTCLLI-VNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPL 72
Query: 72  YYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--DESKR--- 125
            Y     IL+ + +    S  NI   W   + +H   NV  +LVGNK D+  DE  R   
Sbjct: 73  SYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTRREL 131
Query: 126 ------AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
                  V   +G+ +A+  G   + E SAKT   V +VF
Sbjct: 132 AKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G  GK+CLL+                    +  IE+DGK+++L +WDTAGQE +  +   
Sbjct: 16  GACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPL 74
Query: 72  YYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--DESKR--- 125
            Y     IL+ + +    S  NI   W   + +H   NV  +LVGNK D+  DE  R   
Sbjct: 75  SYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTRREL 133
Query: 126 ------AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
                  V   +G+ +A+  G   + E SAKT   V +VF
Sbjct: 134 AKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 72/160 (45%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G  GK+CLL+                    I  IE+DGK+++L +WDTAGQE +  +   
Sbjct: 14  GACGKTCLLI-VNSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPL 72
Query: 72  YYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM---DESKRAV 127
            Y     IL+ + +    S  NI   W   + +H   NV  +LVGNK D+   + ++R +
Sbjct: 73  SYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRQDEHTRREL 131
Query: 128 PTSKGQALADEYG---------IKFFETSAKTNLNVEQVF 158
              K + +  E G           + E SAKT   V +VF
Sbjct: 132 AKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 171

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 72/160 (45%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G  GK+CLL+                    I  IE+DGK+++L +WDTAGQE +  +   
Sbjct: 34  GACGKTCLLI-VFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPL 92
Query: 72  YYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM---DESKRAV 127
            Y     IL+ + +    S  NI   W   + +H   NV  +LVGNK D+   + ++R +
Sbjct: 93  SYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRQDEHTRREL 151
Query: 128 PTSKGQALADEYG---------IKFFETSAKTNLNVEQVF 158
              K + +  E G           + E SAKT   V +VF
Sbjct: 152 AKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 13/167 (7%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                       + ++G  + L +WDTAGQE +  +   
Sbjct: 17  GAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQEDYNRLRPL 75
Query: 72  YYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDESKR----- 125
            YRGA   +L + +  ++S+ N+ + WI  + +H +  V  VLVG K D+ + K+     
Sbjct: 76  SYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIVLVGTKLDLRDDKQFFIDH 134
Query: 126 --AVP--TSKGQALADEYGIK-FFETSAKTNLNVEQVFFSIARDIKQ 167
             AVP  T +G+ L    G   + E S+K+  NV+ VF +  R + Q
Sbjct: 135 PGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQ 181

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 72/160 (45%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G  GK+CLL+                    I  IE+DGK+++L +WDTAGQE +  +   
Sbjct: 34  GACGKTCLLI-VFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPL 92
Query: 72  YYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM---DESKRAV 127
            Y     IL+ + +    S  NI   W   + +H   NV  +LVGNK D+   + ++R +
Sbjct: 93  SYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFXPNVPIILVGNKKDLRQDEHTRREL 151
Query: 128 PTSKGQALADEYG---------IKFFETSAKTNLNVEQVF 158
              K + +  E G           + E SAKT   V +VF
Sbjct: 152 AKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 62/128 (48%), Gaps = 5/128 (3%)
Query: 42  IRTIELDGK-RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW--- 97
           +R I L G   + LQIWD  GQ     +   Y  GA G+LLVYD+T+  SF N+ +W   
Sbjct: 45  LRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTV 104
Query: 98  IRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV 157
           ++ + + +       LVGNK D+ E  R +   K      E G      SAKT  +V   
Sbjct: 105 VKKVSEESETQPLVALVGNKIDL-EHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLC 163
Query: 158 FFSIARDI 165
           F  +A +I
Sbjct: 164 FQKVAAEI 171

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 72/159 (45%), Gaps = 15/159 (9%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
             GK+CLL+                    +  IE+DGK+++L +WDTAGQE +  +    
Sbjct: 16  ACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLS 74
Query: 73  YRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--DESKR---- 125
           Y     IL+ + +    S  NI   W   + +H   NV  +LVGNK D+  DE  R    
Sbjct: 75  YPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTRRELA 133
Query: 126 -----AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
                 V   +G+ +A+  G   + E SAKT   V +VF
Sbjct: 134 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 11/156 (7%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+C+L+                       + +DG+ + L +WDTAGQE +  +   
Sbjct: 18  GAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGQIVNLGLWDTAGQEDYSRLRPL 76
Query: 72  YYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDESK------ 124
            YRGA   +L + +  ++S+ N+ + W+  + + A  NV  VLVG K D+ + K      
Sbjct: 77  SYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRDDKGYLADH 135
Query: 125 -RAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
              + +++G+ L  + G   + E S+KT  NV+ VF
Sbjct: 136 TNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF 171

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 72/160 (45%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G  GK+CLL+                    +  IE+DGK+++L +WDTAG E +  +   
Sbjct: 17  GACGKTCLLI-VNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPL 75
Query: 72  YYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--DESKR--- 125
            Y     IL+ + +    S  NI   W   + +H   NV  +LVGNK D+  DE  R   
Sbjct: 76  SYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTRREL 134
Query: 126 ------AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
                  V   +G+ +A+  G   + E SAKT   V +VF
Sbjct: 135 AKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 69/152 (45%), Gaps = 4/152 (2%)
Query: 9   FERGGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTI 68
           F  GGVGKS L+LR                  + + I  D     LQI DT G  +F  +
Sbjct: 9   FGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAM 67
Query: 69  TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD--NVNKVLVGNKADMDESKRA 126
                      +LVY +T   S   ++     I +   D  ++  +LVGNK D   S R 
Sbjct: 68  QRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS-RE 126
Query: 127 VPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
           V +S+ +ALA  +   F ETSAK N NV+++F
Sbjct: 127 VQSSEAEALARTWKCAFMETSAKLNHNVKELF 158

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                       + +DGK + L +WDTAGQE +  +   
Sbjct: 12  GAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRLRPL 70
Query: 72  YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE-------- 122
            Y      L+ + +   +SF N+R  W   +  H   N   +LVG K D+ +        
Sbjct: 71  SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 129
Query: 123 -SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 158
             K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 130 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                       + +DGK + L +WDTAGQE +  +   
Sbjct: 12  GAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRLRPL 70
Query: 72  YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE-------- 122
            Y      L+ + +   +SF N+R  W   +  H   N   +LVG K D+ +        
Sbjct: 71  SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 129
Query: 123 -SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 158
             K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 130 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                       + +DGK + L +WDTAGQE +  +   
Sbjct: 12  GAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPL 70
Query: 72  YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAV--- 127
            Y      L+ + +   +SF N+R  W   +  H   N   +LVG K D+ + K  +   
Sbjct: 71  SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 129
Query: 128 ------PTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 158
                 P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 130 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                       + +DGK + L +WDTAGQE +  +   
Sbjct: 12  GAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRLRPL 70
Query: 72  YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAV--- 127
            Y      L+ + +   +SF N+R  W   +  H   N   +LVG K D+ + K  +   
Sbjct: 71  SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 129
Query: 128 ------PTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 158
                 P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 130 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                       + +DGK + L +WDTAGQE +  +   
Sbjct: 31  GAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRLRPL 89
Query: 72  YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE-------- 122
            Y      L+ + +   +SF N+R  W   +  H   N   +LVG K D+ +        
Sbjct: 90  SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 148
Query: 123 -SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 158
             K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 149 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 188

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                       + +DGK + L +WDTAGQE +  +   
Sbjct: 12  GAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRLRPL 70
Query: 72  YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAV--- 127
            Y      L+ + +   +SF N+R  W   +  H   N   +LVG K D+ + K  +   
Sbjct: 71  SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 129
Query: 128 ------PTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 158
                 P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 130 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                       + +DGK + L +WDTAGQE +  +   
Sbjct: 39  GAVGKTCLLISYTTNALPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRLRPL 97
Query: 72  YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE-------- 122
            Y      L+ + +   +SF N+R  W   +  H   N   +LVG K D+ +        
Sbjct: 98  SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 156
Query: 123 -SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 158
             K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 157 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                       + +DGK + L +WDTAGQE +  +   
Sbjct: 12  GAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRLRPL 70
Query: 72  YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE-------- 122
            Y      L+ + +   +SF N+R  W   +  H   N   +LVG K D+ +        
Sbjct: 71  SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 129
Query: 123 -SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 158
             K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 130 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                       + +DGK + L +WDTAGQE +  +   
Sbjct: 22  GAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPL 80
Query: 72  YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAV--- 127
            Y      L+ + +   +SF N+R  W   +  H   N   +LVG K D+ + K  +   
Sbjct: 81  SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 139
Query: 128 ------PTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 158
                 P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 140 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 179

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                       + +DGK + L +WDTAGQE +  +   
Sbjct: 39  GAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPL 97
Query: 72  YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE-------- 122
            Y      L+ + +   +SF N+R  W   +  H   N   +LVG K D+ +        
Sbjct: 98  SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 156
Query: 123 -SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 158
             K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 157 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 72/159 (45%), Gaps = 15/159 (9%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
             GK+CLL+                    +  IE+DGK+++L +WDTAGQE +       
Sbjct: 15  ACGKTCLLI-VFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRARPLS 73
Query: 73  YRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--DES------ 123
           Y     IL+ + +    S  NI   W   + +H   NV  +LVGNK D+  DE       
Sbjct: 74  YPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTARELA 132
Query: 124 ---KRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
              +  V  ++G+ +A+  G   + E SAKT   V +VF
Sbjct: 133 KMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                       + +DGK + L +WDTAGQE +  +   
Sbjct: 19  GAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPL 77
Query: 72  YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAV--- 127
            Y      L+ + +   +SF N+R  W   +  H   N   +LVG K D+ + K  +   
Sbjct: 78  SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 136
Query: 128 ------PTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 158
                 P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 137 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 176

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                       + +DGK + L +WDTAGQE +  +   
Sbjct: 12  GAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRLRPL 70
Query: 72  YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE-------- 122
            Y      L+ + +   +SF N+R  W   +  H   N   +LVG K D+ +        
Sbjct: 71  SYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 129
Query: 123 -SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 158
             K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 130 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                       + +DGK + L +WDTAGQE +  +   
Sbjct: 12  GAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPL 70
Query: 72  YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE-------- 122
            Y      L+ + +   +SF N+R  W   +  H   N   +LVG K D+ +        
Sbjct: 71  SYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 129
Query: 123 -SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 158
             K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 130 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                       + +DGK + L +WDTAGQE +  +   
Sbjct: 14  GAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPL 72
Query: 72  YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE-------- 122
            Y      L+ + +   +SF N+R  W   +  H   N   +LVG K D+ +        
Sbjct: 73  SYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 131
Query: 123 -SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 158
             K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 132 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                       + +DGK + L +WDTAGQE +  +   
Sbjct: 16  GAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRLRPL 74
Query: 72  YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE-------- 122
            Y      L+ + +   +SF N+R  W   +  H   N   +LVG K D+ +        
Sbjct: 75  SYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 133
Query: 123 -SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 158
             K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 134 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 173

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 6/129 (4%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF---NNIRNWIR 99
           R+I +DG+   L ++D   Q+  R +           ++VY VTD+ SF   + +R  +R
Sbjct: 40  RSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLR 99
Query: 100 NIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF 159
              Q  +D+V  +LVGNK+D+  S R V   +G+A A  +  KF ETSA  + NV+ +F 
Sbjct: 100 RARQ--TDDVPIILVGNKSDLVRS-REVSVDEGRACAVVFDCKFIETSAALHHNVQALFE 156
Query: 160 SIARDIKQR 168
            + R I+ R
Sbjct: 157 GVVRQIRLR 165

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 6/129 (4%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF---NNIRNWIR 99
           R+I +DG+   L ++D   Q+  R +           ++VY VTD+ SF   + +R  +R
Sbjct: 45  RSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLR 104
Query: 100 NIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF 159
              Q  +D+V  +LVGNK+D+  S R V   +G+A A  +  KF ETSA  + NV+ +F 
Sbjct: 105 RARQ--TDDVPIILVGNKSDLVRS-REVSVDEGRACAVVFDCKFIETSAALHHNVQALFE 161
Query: 160 SIARDIKQR 168
            + R I+ R
Sbjct: 162 GVVRQIRLR 170

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 6/129 (4%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF---NNIRNWIR 99
           R+I +DG+   L ++D   Q+  R +           ++VY VTD+ SF   + +R  +R
Sbjct: 45  RSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLR 104
Query: 100 NIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF 159
              Q  +D+V  +LVGNK+D+  S R V   +G+A A  +  KF ETSA  + NV+ +F 
Sbjct: 105 RARQ--TDDVPIILVGNKSDLVRS-REVSVDEGRACAVVFDCKFIETSAALHHNVQALFE 161
Query: 160 SIARDIKQR 168
            + R I+ R
Sbjct: 162 GVVRQIRLR 170

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 6/156 (3%)
Query: 49  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 108
           G  IK  +WDTAGQE+   +   YY GA G +L +DVT   +  N+  W++  +    + 
Sbjct: 58  GNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNE 117
Query: 109 VNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
              V+  NK D+   ++       + L  +   ++FE SAKT  N    F  +AR    R
Sbjct: 118 APIVVCANKIDIKNRQKISKKLVMEVLKGK-NYEYFEISAKTAHNFGLPFLHLARIFTGR 176
Query: 169 ---LADTDSRSEPSTIK--INQPDQAGGVGQAAQKS 199
              +  ++   EP+ +    + P+++  +    Q S
Sbjct: 177 PDLIFVSNVNLEPTEVNYDYHSPEESKYIDYMEQAS 212

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 14/128 (10%)
Query: 44  TIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIE 102
            + +DG+ ++LQ+ DTAGQ+ F  +    Y      LL + V   SSF N+   W+  I 
Sbjct: 60  VVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIR 119
Query: 103 QHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEY-GIKFFETSAKT 150
            H       +LVG ++D+ E            ++ VP    + LA+E     + E SA T
Sbjct: 120 CHCP-KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALT 178
Query: 151 NLNVEQVF 158
             N+++VF
Sbjct: 179 QKNLKEVF 186

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                       + +DGK + L +WDTAG E +  +   
Sbjct: 12  GAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLEDYDRLRPL 70
Query: 72  YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE-------- 122
            Y      L+ + +   +SF N+R  W   +  H   N   +LVG K D+ +        
Sbjct: 71  SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 129
Query: 123 -SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 158
             K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 130 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                       + +DGK + L +WDTAG E +  +   
Sbjct: 12  GAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLEDYDRLRPL 70
Query: 72  YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE-------- 122
            Y      L+ + +   +SF N+R  W   +  H   N   +LVG K D+ +        
Sbjct: 71  SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 129
Query: 123 -SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 158
             K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 130 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 69/160 (43%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                       + +DGK + L +WDTAGQE +  +   
Sbjct: 12  GAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRLRPL 70
Query: 72  YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADM---------- 120
            Y      L+ + +   +SF N+R  W   +  H   +   +LVG K D+          
Sbjct: 71  SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-HTPILLVGTKLDLRDDKDTIERL 129
Query: 121 -DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
            D+    +   +G A+A E G +K+ E SA T   ++ VF
Sbjct: 130 RDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 169

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 69/160 (43%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                       + +DGK + L +WDTAGQE +  +   
Sbjct: 13  GAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRLRPL 71
Query: 72  YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADM---------- 120
            Y      L+ + +   +SF N+R  W   +  H   +   +LVG K D+          
Sbjct: 72  SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-HTPILLVGTKLDLRDDKDTIERL 130
Query: 121 -DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
            D+    +   +G A+A E G +K+ E SA T   ++ VF
Sbjct: 131 RDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 170

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 69/160 (43%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                       + +DGK + L +WDTAGQE +  +   
Sbjct: 13  GAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRLRPL 71
Query: 72  YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADM---------- 120
            Y      L+ + +   +SF N+R  W   +  H   +   +LVG K D+          
Sbjct: 72  SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-HTPILLVGTKLDLRDDKDTIERL 130
Query: 121 -DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
            D+    +   +G A+A E G +K+ E SA T   ++ VF
Sbjct: 131 RDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 170

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                       + +DGK + L +WDTAG E +  +   
Sbjct: 15  GAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLEDYDRLRPL 73
Query: 72  YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAV--- 127
            Y      L+ + +   +SF N+R  W   +  H   N   +LVG K D+ + K  +   
Sbjct: 74  SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 132
Query: 128 ------PTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 158
                 P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 133 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 172

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                       + +DGK + L +WDTAG E +  +   
Sbjct: 39  GAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLEDYDRLRPL 97
Query: 72  YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE-------- 122
            Y      L+ + +   +SF N+R  W   +  H   N   +LVG K D+ +        
Sbjct: 98  SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 156
Query: 123 -SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 158
             K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 157 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           + I  D     LQI DT G  +F  +           +LV+ VT + S   +    + I 
Sbjct: 47  QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIV 106
Query: 103 Q--HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
           Q   + +++  +LVGNK D  E++R V T + QA+A E+   F ETSAK N NV+++F
Sbjct: 107 QIKGSVEDIPVMLVGNKCD--ETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELF 162

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 60/121 (49%), Gaps = 10/121 (8%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           + I ++G+   LQ+ DTAGQ+ +      Y     G +LVY VT   SF      I+ I 
Sbjct: 45  KLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSF----EVIKVIH 100
Query: 103 QHASDNVNKV-----LVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV 157
               D V KV     LVGNK D+   +R +   +G+ALA+ +   F E+SAK N     V
Sbjct: 101 GKLLDMVGKVQIPIMLVGNKKDL-HMERVISYEEGKALAESWNAAFLESSAKENQTAVDV 159
Query: 158 F 158
           F
Sbjct: 160 F 160

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 69/160 (43%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                       + +DGK + L +WDTAG E +  +   
Sbjct: 164 GAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDYDRLRPL 222
Query: 72  YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS 130
            Y      L+ + +   +SF+++R  W   +  H   N   +LVG K D+ + K  +   
Sbjct: 223 SYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 281
Query: 131 K-----------GQALADEYG-IKFFETSAKTNLNVEQVF 158
           K           G A+A E G +K+ E SA T   ++ VF
Sbjct: 282 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 69/160 (43%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                       + +DGK + L +WDTAG E +  +   
Sbjct: 164 GAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDYDRLRPL 222
Query: 72  YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS 130
            Y      L+ + +   +SF+++R  W   +  H   N   +LVG K D+ + K  +   
Sbjct: 223 SYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 281
Query: 131 K-----------GQALADEYG-IKFFETSAKTNLNVEQVF 158
           K           G A+A E G +K+ E SA T   ++ VF
Sbjct: 282 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 60/121 (49%), Gaps = 10/121 (8%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           + I ++G+   LQ+ DTAGQ+ +      Y     G +LVY VT   SF      I+ I 
Sbjct: 40  KLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSF----EVIKVIH 95
Query: 103 QHASDNVNKV-----LVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV 157
               D V KV     LVGNK D+   +R +   +G+ALA+ +   F E+SAK N     V
Sbjct: 96  GKLLDMVGKVQIPIMLVGNKKDL-HMERVISYEEGKALAESWNAAFLESSAKENQTAVDV 154
Query: 158 F 158
           F
Sbjct: 155 F 155

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 69/160 (43%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                       + +DGK + L +WDTAG E +  +   
Sbjct: 164 GAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDYDRLRPL 222
Query: 72  YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS 130
            Y      L+ + +   +SF+++R  W   +  H   N   +LVG K D+ + K  +   
Sbjct: 223 SYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 281
Query: 131 K-----------GQALADEYG-IKFFETSAKTNLNVEQVF 158
           K           G A+A E G +K+ E SA T   ++ VF
Sbjct: 282 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 60/121 (49%), Gaps = 10/121 (8%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           + I ++G+   LQ+ DTAGQ+ +      Y     G +LVY VT   SF      I+ I 
Sbjct: 45  KLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSF----EVIKVIH 100
Query: 103 QHASDNVNKV-----LVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV 157
               D V KV     LVGNK D+   +R +   +G+ALA+ +   F E+SAK N     V
Sbjct: 101 GKLLDMVGKVQIPIMLVGNKKDL-HMERVISYEEGKALAESWNAAFLESSAKENQTAVDV 159
Query: 158 F 158
           F
Sbjct: 160 F 160

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 60/121 (49%), Gaps = 10/121 (8%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
           + I ++G+   LQ+ DTAGQ+ +      Y     G +LVY VT   SF      I+ I 
Sbjct: 43  KLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSF----EVIKVIH 98
Query: 103 QHASDNVNKV-----LVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV 157
               D V KV     LVGNK D+   +R +   +G+ALA+ +   F E+SAK N     V
Sbjct: 99  GKLLDMVGKVQIPIMLVGNKKDL-HMERVISYEEGKALAESWNAAFLESSAKENQTAVDV 157
Query: 158 F 158
           F
Sbjct: 158 F 158

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 15/170 (8%)
Query: 2   LFLLRIYFERGGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 61
           L L  +    G VGK+CLL+                    + ++ + GK+  L ++DTAG
Sbjct: 17  LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV-SVTVGGKQYLLGLYDTAG 75
Query: 62  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADM 120
           QE +  +    Y      L+ + V + +SF N++  W+  ++++A  NV  +L+G + D+
Sbjct: 76  QEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDL 134
Query: 121 -----------DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
                      D  ++ +   +GQ LA E G   + E SA T   ++ VF
Sbjct: 135 RDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 73/179 (40%), Gaps = 34/179 (18%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                       + +DGK + L +WDTAGQE +  +   
Sbjct: 14  GAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRLRPL 72
Query: 72  YYRGAMG-------------------ILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNK 111
            Y   +G                    L+ + +   +SF N+R  W   +  H   N   
Sbjct: 73  SYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPI 131
Query: 112 VLVGNKADMDESKRAV---------PTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 158
           +LVG K D+ + K  +         P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 132 ILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 190

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                       + +D K + L +WDTAGQE +  +   
Sbjct: 12  GAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQEDYDRLRPL 70
Query: 72  YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE-------- 122
            Y      L+ + +   +S+ N+R  W   +  H   +   +LVG K D+ +        
Sbjct: 71  SYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCP-STPIILVGTKLDLRDDKDTIEKL 129
Query: 123 -SKRAVPTS--KGQALADEY-GIKFFETSAKTNLNVEQVF 158
             K+  P +  +G ALA E   +K+ E SA T   ++ VF
Sbjct: 130 KEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 169

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 72/132 (54%), Gaps = 11/132 (8%)
Query: 43  RTIELDGKR---IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF---NNIRN 96
           RT+ +DG+    I L +W+  G+  +  +     +     L+VY +TD +SF   + +R 
Sbjct: 47  RTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRI 104
Query: 97  WIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ 156
            +R   Q  ++++  +LVGNK+D+    R V  S+G+A A  +  KF ETSA    NV++
Sbjct: 105 QLRRARQ--TEDIPIILVGNKSDLVRC-REVSVSEGRACAVVFDCKFIETSAAVQHNVKE 161
Query: 157 VFFSIARDIKQR 168
           +F  I R ++ R
Sbjct: 162 LFEGIVRQVRLR 173

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 72/132 (54%), Gaps = 11/132 (8%)
Query: 43  RTIELDGKR---IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF---NNIRN 96
           RT+ +DG+    I L +W+  G+  +  +     +     L+VY +TD +SF   + +R 
Sbjct: 78  RTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRI 135
Query: 97  WIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ 156
            +R   Q  ++++  +LVGNK+D+    R V  S+G+A A  +  KF ETSA    NV++
Sbjct: 136 QLRRARQ--TEDIPIILVGNKSDLVRC-REVSVSEGRACAVVFDCKFIETSAAVQHNVKE 192
Query: 157 VFFSIARDIKQR 168
           +F  I R ++ R
Sbjct: 193 LFEGIVRQVRLR 204

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 72/132 (54%), Gaps = 11/132 (8%)
Query: 43  RTIELDGKR---IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF---NNIRN 96
           RT+ +DG+    I L +W+  G+  +  +     +     L+VY +TD +SF   + +R 
Sbjct: 47  RTLMVDGESATIILLDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRI 104
Query: 97  WIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ 156
            +R   Q  ++++  +LVGNK+D+    R V  S+G+A A  +  KF ETSA    NV++
Sbjct: 105 QLRRARQ--TEDIPIILVGNKSDL-VRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKE 161
Query: 157 VFFSIARDIKQR 168
           +F  I R ++ R
Sbjct: 162 LFEGIVRQVRLR 173

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 72/132 (54%), Gaps = 11/132 (8%)
Query: 43  RTIELDGKR---IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF---NNIRN 96
           RT+ +DG+    I L +W+  G+  +  +     +     L+VY +TD +SF   + +R 
Sbjct: 47  RTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRI 104
Query: 97  WIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ 156
            +R   Q  ++++  +LVGNK+D+    R V  S+G+A A  +  KF ETSA    NV++
Sbjct: 105 QLRRARQ--TEDIPIILVGNKSDL-VRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKE 161
Query: 157 VFFSIARDIKQR 168
           +F  I R ++ R
Sbjct: 162 LFEGIVRQVRLR 173

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 15/159 (9%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
            VGK+CLL+                       + +D K + L +WDTAGQE +  +    
Sbjct: 19  AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDSKPVNLGLWDTAGQEDYDRLRPLS 77
Query: 73  YRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAV---- 127
           Y      L+ + +   +S+ N+R  W   +  H   +   +LVG K D+ + K  +    
Sbjct: 78  YPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCP-STPIILVGTKLDLRDDKDTIEKLK 136
Query: 128 -----PTS--KGQALADEY-GIKFFETSAKTNLNVEQVF 158
                P +  +G ALA E   +K+ E SA T   ++ VF
Sbjct: 137 EKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 175

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 15/159 (9%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
            VGK+CLL+                       + +D K + L +WDTAGQE +  +    
Sbjct: 20  AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDSKPVNLGLWDTAGQEDYDRLRPLS 78
Query: 73  YRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAV---- 127
           Y      L+ + +   +S+ N+R  W   +  H   +   +LVG K D+ + K  +    
Sbjct: 79  YPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCP-STPIILVGTKLDLRDDKDTIEKLK 137
Query: 128 -----PTS--KGQALADEY-GIKFFETSAKTNLNVEQVF 158
                P +  +G ALA E   +K+ E SA T   ++ VF
Sbjct: 138 EKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 176

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 63/121 (52%), Gaps = 8/121 (6%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITT--AYYRGAMGILLVYDVTDESSFNN---IRNW 97
           RT+ +DG+   L + DT   E+     +  +  +G    ++VY + D  SF +   +R  
Sbjct: 43  RTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQ 102
Query: 98  IRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV 157
           +R    H +D+V  +LVGNKAD+    R V   +G+A A  +  KF ETSA    NV ++
Sbjct: 103 LRRT--HQADHVPIILVGNKADLARC-REVSVEEGRACAVVFDCKFIETSATLQHNVAEL 159
Query: 158 F 158
           F
Sbjct: 160 F 160

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 5/150 (3%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLLL                       ++   +   L +WDTAGQE +  +   
Sbjct: 32  GAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPL 90
Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM-DESKRAVPT 129
            Y  +  +LL + V + +SF+NI   W   I +H  D    VLVG K D+  +    V  
Sbjct: 91  SYADSDVVLLCFAVNNRTSFDNISTKWEPEI-KHYIDTAKTVLVGLKVDLRKDGSDDVTK 149
Query: 130 SKGQALADEYG-IKFFETSAKTNLNVEQVF 158
            +G  L  + G + + E S+   + + +VF
Sbjct: 150 QEGDDLCQKLGCVAYIEASSVAKIGLNEVF 179

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 5/150 (3%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLLL                       ++   +   L +WDTAGQE +  +   
Sbjct: 31  GAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPL 89
Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM-DESKRAVPT 129
            Y  +  +LL + V + +SF+NI   W   I +H  D    VLVG K D+  +    V  
Sbjct: 90  SYADSDVVLLCFAVNNRTSFDNISTKWEPEI-KHYIDTAKTVLVGLKVDLRKDGSDDVTK 148
Query: 130 SKGQALADEYG-IKFFETSAKTNLNVEQVF 158
            +G  L  + G + + E S+   + + +VF
Sbjct: 149 QEGDDLCQKLGCVAYIEASSVAKIGLNEVF 178

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                    + T+ + G+   L ++DTAGQE +  +   
Sbjct: 12  GAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVXIGGEPYTLGLFDTAGQEDYDRLRPL 70
Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
            Y      L+ + V   SSF N++  W+  I  H       +LVG + D+          
Sbjct: 71  SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 129
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
             ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 130 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                    + T+ + G+   L ++DTAGQE +  +   
Sbjct: 12  GAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPL 70
Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
            Y      L+ + V   SSF N++  W+  I  H       +LVG + D+          
Sbjct: 71  SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 129
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
             ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 130 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                    + T+ + G+   L ++DTAGQE +  +   
Sbjct: 13  GAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPL 71
Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
            Y      L+ + V   SSF N++  W+  I  H       +LVG + D+          
Sbjct: 72  SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 130
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
             ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 131 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 170

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                    + T+ + G+   L ++DTAGQE +  +   
Sbjct: 14  GAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPL 72
Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
            Y      L+ + V   SSF N++  W+  I  H       +LVG + D+          
Sbjct: 73  SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 131
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
             ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 132 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                    + T+ + G+   L ++DTAGQE +  +   
Sbjct: 12  GAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPL 70
Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
            Y      L+ + V   SSF N++  W+  I  H       +LVG + D+          
Sbjct: 71  SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 129
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
             ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 130 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                    + T+ + G+   L ++DTAGQE +  +   
Sbjct: 22  GAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPL 80
Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
            Y      L+ + V   SSF N++  W+  I  H       +LVG + D+          
Sbjct: 81  SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 139
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
             ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 140 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 179

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                    + T+ + G+   L ++DTAGQE +  +   
Sbjct: 15  GAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPL 73
Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
            Y      L+ + V   SSF N++  W+  I  H       +LVG + D+          
Sbjct: 74  SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 132
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
             ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 133 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                    + T+ + G+   L ++DTAGQE +  +   
Sbjct: 12  GAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPL 70
Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
            Y      L+ + V   SSF N++  W+  I  H       +LVG + D+          
Sbjct: 71  SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 129
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
             ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 130 AKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                    + T+ + G+   L ++DTAGQE +  +   
Sbjct: 15  GAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPL 73
Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
            Y      L+ + V   SSF N++  W+  I  H       +LVG + D+          
Sbjct: 74  SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 132
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
             ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 133 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                    + T+ + G+   L ++DTAGQE +  +   
Sbjct: 12  GAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPL 70
Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
            Y      L+ + V   SSF N++  W+  I  H       +LVG + D+          
Sbjct: 71  SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 129
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
             ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 130 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                    + T+ + G+   L ++DTAGQE +  +   
Sbjct: 19  GAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPL 77
Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
            Y      L+ + V   SSF N++  W+  I  H       +LVG + D+          
Sbjct: 78  SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 136
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
             ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 137 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                    + T+ + G+   L ++DTAGQE +  +   
Sbjct: 12  GAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPL 70
Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
            Y      L+ + V   SSF N++  W+  I  H       +LVG + D+          
Sbjct: 71  SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 129
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
             ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 130 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                    + T+ + G+   L ++DTAGQE +  +   
Sbjct: 12  GAVGKTCLLISYTTNKLPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPL 70
Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
            Y      L+ + V   SSF N++  W+  I  H       +LVG + D+          
Sbjct: 71  SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 129
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
             ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 130 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                    + T+ + G+   L ++DTAGQE +  +   
Sbjct: 14  GAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPL 72
Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
            Y      L+ + V   SSF N++  W+  I  H       +LVG + D+          
Sbjct: 73  SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 131
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
             ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 132 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                    + T+ + G+   L ++DTAGQE +  +   
Sbjct: 16  GAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPL 74
Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
            Y      L+ + V   SSF N++  W+  I  H       +LVG + D+          
Sbjct: 75  SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 133
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
             ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 134 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                    + T+ + G+   L ++DTAGQE +  +   
Sbjct: 12  GAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPL 70
Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
            Y      L+ + V   SSF N++  W+  I  H       +LVG + D+          
Sbjct: 71  SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 129
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
             ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 130 AKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                    + T+ + G+   L ++DTAGQE +  +   
Sbjct: 12  GAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPL 70
Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
            Y      L+ + V   SSF N++  W+  I  H       +LVG + D+          
Sbjct: 71  SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 129
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
             ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 130 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                    + T+ + G+   L ++DTAGQE +  +   
Sbjct: 12  GAVGKTCLLISYTTNKFPSEYVPAVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPL 70
Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
            Y      L+ + V   SSF N++  W+  I  H       +LVG + D+          
Sbjct: 71  SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 129
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
             ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 130 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                    + T+ + G+   L ++DTAGQE +  +   
Sbjct: 19  GAVGKNCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPL 77
Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
            Y      L+ + V   SSF N++  W+  I  H       +LVG + D+          
Sbjct: 78  SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 136
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
             ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 137 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                    + T+ + G+   L + DTAGQE +  +   
Sbjct: 12  GAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLRDTAGQEDYDRLRPL 70
Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
            Y      L+ + V   SSF N++  W+  I  H       +LVG + D+          
Sbjct: 71  SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 129
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
             ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 130 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 65/159 (40%), Gaps = 15/159 (9%)
Query: 13  GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
            VGK+CLL+                    + T+ + G+   L ++DTAGQE +  +    
Sbjct: 13  AVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLS 71
Query: 73  YRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM----------- 120
           Y      L+ + V   SSF N++  W+  I  H       +LVG + D+           
Sbjct: 72  YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKLA 130
Query: 121 -DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
            ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 131 KNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 65/160 (40%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                    + T+ + G+   L ++DTAG E +  +   
Sbjct: 16  GAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLEDYDRLRPL 74
Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
            Y      L+ + V   SSF N++  W+  I  H       +LVG + D+          
Sbjct: 75  SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 133
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
             ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 134 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 65/160 (40%), Gaps = 15/160 (9%)
Query: 12  GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+                    + T+ + G+   L ++DTAG E +  +   
Sbjct: 12  GAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLEDYDRLRPL 70
Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
            Y      L+ + V   SSF N++  W+  I  H       +LVG + D+          
Sbjct: 71  SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 129
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
             ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 130 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 52  IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD---N 108
           ++L + DTAG + ++   + Y+ G    +LV+DV+   SF + + W   ++    D    
Sbjct: 73  VELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERP 132
Query: 109 VNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSA-KTNLNVEQVFFSIA 162
           +  VLV NK D+   +  V     Q  A    + FF+ SA     + +  F SIA
Sbjct: 133 LRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIA 187

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 66/125 (52%), Gaps = 6/125 (4%)
Query: 47  LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS 106
           +D + + L++ DTA  +  R     Y   A   L+VY V    SF++  +++  +  HA 
Sbjct: 64  VDHQPVHLRVMDTADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAK 122
Query: 107 D---NVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL-NVEQVFFSIA 162
           +   ++  +L+GNK DM +  R V  ++G ALA  +G  FFE SA  +  +V+ VF    
Sbjct: 123 ETQRSIPALLLGNKLDMAQY-RQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAV 181
Query: 163 RDIKQ 167
           R+ ++
Sbjct: 182 REARR 186

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 64/132 (48%), Gaps = 14/132 (10%)
Query: 44  TIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIE 102
           + E+D +RI+L +WDT+G   +  +    Y  +  +L+ +D++   + +++ + W   I+
Sbjct: 68  SFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ 127
Query: 103 QHASDNVNKVLVGNKADMD---------ESKRAVPTS--KGQALADEYG-IKFFETSAKT 150
           +    N   +LVG K+D+           + R  P S  +G  +A + G   + E SA  
Sbjct: 128 EFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ 186
Query: 151 NLNVEQVFFSIA 162
           + N  +  F +A
Sbjct: 187 SENSVRDIFHVA 198

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 64/132 (48%), Gaps = 14/132 (10%)
Query: 44  TIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIE 102
           + E+D +RI+L +WDT+G   +  +    Y  +  +L+ +D++   + +++ + W   I+
Sbjct: 63  SFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ 122
Query: 103 QHASDNVNKVLVGNKADMD---------ESKRAVPTS--KGQALADEYG-IKFFETSAKT 150
           +    N   +LVG K+D+           + R  P S  +G  +A + G   + E SA  
Sbjct: 123 EFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ 181
Query: 151 NLNVEQVFFSIA 162
           + N  +  F +A
Sbjct: 182 SENSVRDIFHVA 193

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 64/132 (48%), Gaps = 14/132 (10%)
Query: 44  TIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIE 102
           + E+D +RI+L +WDT+G   +  +    Y  +  +L+ +D++   + +++ + W   I+
Sbjct: 47  SFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ 106
Query: 103 QHASDNVNKVLVGNKADMD---------ESKRAVPTS--KGQALADEYG-IKFFETSAKT 150
           +    N   +LVG K+D+           + R  P S  +G  +A + G   + E SA  
Sbjct: 107 EFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ 165
Query: 151 NLNVEQVFFSIA 162
           + N  +  F +A
Sbjct: 166 SENSVRDIFHVA 177

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 79  ILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD 137
            L+V+ VTD  SF+ +    +R        ++  +LVGNK+D+  S R V   +G+ LA 
Sbjct: 89  FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARS-REVSLEEGRHLAG 147
Query: 138 EYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
               K  ETSA  + N  ++F    R I+ R
Sbjct: 148 TLSCKHIETSAALHHNTRELFEGAVRQIRLR 178

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 79  ILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD 137
            L+V+ VTD  SF+ +    +R        ++  +LVGNK+D+  S R V   +G+ LA 
Sbjct: 79  FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARS-REVSLEEGRHLAG 137
Query: 138 EYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
               K  ETSA  + N  ++F    R I+ R
Sbjct: 138 TLSCKHIETSAALHHNTRELFEGAVRQIRLR 168

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 79  ILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD 137
            L+V+ VTD  SF+ +    +R        ++  +LVGNK+D+  S R V   +G+ LA 
Sbjct: 100 FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARS-REVSLEEGRHLAG 158
Query: 138 EYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
               K  ETSA  + N  ++F    R I+ R
Sbjct: 159 TLSCKHIETSAALHHNTRELFEGAVRQIRLR 189

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 50  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDN 108
           K I   +WD  GQ+R R++   YYR   G++ V D  D S     R  + R + +    N
Sbjct: 59  KNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRN 118
Query: 109 VNKVLVGNKADMDESKRAVPTSKGQAL 135
              ++  NK D+ E+  A   ++   L
Sbjct: 119 AAWLVFANKQDLPEAMSAAEITEKLGL 145

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 50  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDN 108
           K I   +WD  GQ+R R++   YYR   G++ V D  D S     R  + R + +    N
Sbjct: 42  KNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRN 101
Query: 109 VNKVLVGNKADMDESKRAVPTSKGQAL 135
              ++  NK D+ E+  A   ++   L
Sbjct: 102 AAWLVFANKQDLPEAMSAAEITEKLGL 128

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 50  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDN 108
           K I   +WD  GQ+R R++   YYR   G++ V D  D S     R  + R + +    N
Sbjct: 59  KNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRN 118
Query: 109 VNKVLVGNKADMDESKRAVPTSKGQAL 135
              ++  NK D+ E+  A   ++   L
Sbjct: 119 AVWLVFANKQDLPEAMSAAEITEKLGL 145

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 52  IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRN-IEQHASDNVN 110
           + ++IWD  GQ RFR++   Y RG   I+ + D  D       RN + N +++     + 
Sbjct: 67  VTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIP 126
Query: 111 KVLVGNKADM 120
            +++GNK D+
Sbjct: 127 VLVLGNKRDL 136

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 52  IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRN-IEQHASDNVN 110
           + +++WD  GQ RFR++   Y RG   I+ + D  D+      +N + N +++     + 
Sbjct: 67  VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP 126
Query: 111 KVLVGNKADM 120
            +++GNK D+
Sbjct: 127 VLVLGNKRDL 136

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 52  IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRN-IEQHASDNVN 110
           + +++WD  GQ RFR++   Y RG   I+ + D  D+      +N + N +++     + 
Sbjct: 76  VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP 135
Query: 111 KVLVGNKADM 120
            +++GNK D+
Sbjct: 136 VLVLGNKRDL 145

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 50  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI--EQHASD 107
           K +K  +WD  GQ++ R +   YY G  G++ V D  D    +  R  +  I  ++   D
Sbjct: 364 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 423
Query: 108 NVNKVLVGNKADMDESKRA 126
            +  ++  NK D+ ++ + 
Sbjct: 424 AI-ILIFANKQDLPDAMKP 441

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 64/132 (48%), Gaps = 17/132 (12%)
Query: 45  IELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNN-IRNWIRNIEQ 103
           +E + +R++L +WDT+G   +  +    Y  +  +LL +D++   + ++ ++ W   I  
Sbjct: 51  LETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILD 110
Query: 104 HASDNVNKVLVGNKADMD---------ESKRAVPTS--KGQALADEYGIK-FFETSAKTN 151
           +   +   +L+G K D+            ++  P S  +G A+A + G + + E SA T+
Sbjct: 111 YCP-STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS 169
Query: 152 LNVEQVFFSIAR 163
              E+   SI R
Sbjct: 170 ---EKSIHSIFR 178

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 64/132 (48%), Gaps = 17/132 (12%)
Query: 45  IELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNN-IRNWIRNIEQ 103
           +E + +R++L +WDT+G   +  +    Y  +  +LL +D++   + ++ ++ W   I  
Sbjct: 52  LETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILD 111
Query: 104 HASDNVNKVLVGNKADMD---------ESKRAVPTS--KGQALADEYGIK-FFETSAKTN 151
           +   +   +L+G K D+            ++  P S  +G A+A + G + + E SA T+
Sbjct: 112 YCP-STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS 170
Query: 152 LNVEQVFFSIAR 163
              E+   SI R
Sbjct: 171 ---EKSIHSIFR 179

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/132 (21%), Positives = 63/132 (47%), Gaps = 17/132 (12%)
Query: 45  IELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNN-IRNWIRNIEQ 103
           +E + +R++L +WDT+G   +  +    Y  +  +LL +D++   + ++ ++ W   I  
Sbjct: 68  LETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILD 127
Query: 104 HASDNVNKVLVGNKADM-----------DESKRAVPTSKGQALADEYGIK-FFETSAKTN 151
           +   +   +L+G K D+            + +  +   +G A+A + G + + E SA T+
Sbjct: 128 YCP-STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS 186
Query: 152 LNVEQVFFSIAR 163
              E+   SI R
Sbjct: 187 ---EKSIHSIFR 195

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 50  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDN 108
           K +K  +WD  GQ++ R +   YY G  G++ V D  D    +  R  + R I      +
Sbjct: 42  KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRD 101
Query: 109 VNKVLVGNKADMDESKRA 126
              ++  NK D+ ++ + 
Sbjct: 102 AIILIFANKQDLPDAXKP 119

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 52  IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDNVN 110
           I   +WD  GQ+R R++   YY    G++ V D  D S     R  + R + +    N  
Sbjct: 61  ISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAA 120
Query: 111 KVLVGNKADMDESKRAVPTSKGQAL 135
            ++  NK D+ E+  A   ++   L
Sbjct: 121 WLVFANKQDLPEAMSAAEITEKLGL 145

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 50  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI--EQHASD 107
           K +K  +WD  GQ++ R +   YY G  G++ V D  D    +  R  +  I  ++   D
Sbjct: 55  KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 114
Query: 108 NVNKVLVGNKADMDESKRA 126
            +  ++  NK D+ ++ + 
Sbjct: 115 AI-ILIFANKQDLPDAMKP 132

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 50  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI--EQHASD 107
           K +K  +WD  GQ++ R +   YY G  G++ V D  D    +  R  +  I  ++   D
Sbjct: 54  KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 113
Query: 108 NVNKVLVGNKADMDESKRA 126
            +  ++  NK D+ ++ + 
Sbjct: 114 AI-ILIFANKQDLPDAMKP 131

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 50  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI--EQHASD 107
           K +K  +WD  GQ++ R +   YY G  G++ V D  D    +  R  +  I  ++   D
Sbjct: 42  KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 101
Query: 108 NVNKVLVGNKADMDESKRA 126
            +  ++  NK D+ ++ + 
Sbjct: 102 AI-ILIFANKQDLPDAMKP 119

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 50  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI--EQHASD 107
           K +K  +WD  GQ++ R +   YY G  G++ V D  D    +  R  +  I  ++   D
Sbjct: 42  KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 101
Query: 108 NVNKVLVGNKADMDESKRA 126
            +  ++  NK D+ ++ + 
Sbjct: 102 AI-ILIFANKQDLPDAMKP 119

>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3 Length = 184

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 8/126 (6%)
Query: 43  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW-IRNI 101
           + I +DG+   L I D  G    +     +      ++ V+ + DE SF  + N+ +R  
Sbjct: 58  KEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLC 112
Query: 102 EQHASDNVNKVLVGNKADMDES-KRAVPTSKGQALA-DEYGIKFFETSAKTNLNVEQVFF 159
               +  V  VLVG +  +  +  R +  S+ + L+ D     ++ET A   LNVE+VF 
Sbjct: 113 SFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQ 172
Query: 160 SIARDI 165
            +A+ +
Sbjct: 173 DVAQKV 178

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	205
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	1e-111
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	1e-110
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-108
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	1e-108
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	1e-107
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	1e-107
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	1e-107
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	1e-107
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	1e-107
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	1e-107
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	1e-107
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	1e-106
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	1e-106
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	1e-106
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	1e-106
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	1e-105
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	1e-105
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-105
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	1e-104
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	1e-103
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	1e-103
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	1e-103
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	1e-102
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	1e-102
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	1e-102
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	1e-102
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	1e-101
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-101
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	1e-101
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	1e-101
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	1e-99
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	3e-99
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	7e-99
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	1e-98
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	1e-98
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	5e-98
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	3e-97
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	1e-95
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	2e-95
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	3e-95
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	7e-93
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	2e-91
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	5e-89
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	7e-89
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	3e-88
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	4e-87
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	2e-86
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	2e-86
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	7e-86
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	1e-85
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	2e-85
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	3e-85
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	8e-85
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	1e-84
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	1e-84
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	4e-84
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	6e-84
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	6e-83
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	3e-82
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	7e-82
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	3e-80
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	8e-79
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	2e-78
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	1e-76
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	4e-75
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	2e-74
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	5e-74
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	2e-73
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	2e-67
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	4e-58
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	4e-57
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	4e-51
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	5e-51
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	6e-49
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	1e-47
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	2e-46
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	3e-46
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	4e-45
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	6e-44
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	2e-43
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	2e-43
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	4e-43
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	1e-41
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	2e-40
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	2e-28
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	3e-22
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	2e-15
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	2e-15
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	3e-15
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	4e-15
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	6e-15
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	1e-14
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	2e-14
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	4e-14
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	4e-14
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	8e-14
3llu_A	196	RAS-related GTP-binding protein C; structural geno	1e-12
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	4e-12
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	9e-12
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	2e-11
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	3e-11
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	3e-11
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	3e-11
2fh5_B	214	SR-beta, signal recognition particle receptor beta	2e-09
2ged_A	193	SR-beta, signal recognition particle receptor beta	2e-08
1nrj_B	218	SR-beta, signal recognition particle receptor beta	6e-08
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	4e-05
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	7e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  314 bits (807), Expect = e-111
 Identities = 92/190 (48%), Positives = 127/190 (66%), Gaps = 1/190 (0%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLLLRFSD ++T  +I+TIG+DFKI+T+ELDGK +KLQIWDTAGQERFRTIT++Y
Sbjct: 18  GVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSY 77

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRG+ GI++VYDVTD+ SFN ++ W++ I+++A+  V K+LVGNK D+ + KR V     
Sbjct: 78  YRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL-KDKRVVEYDVA 136

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGV 192
           +  AD   + F ETSA  + NVE  F ++AR IK+ ++  +        +        G 
Sbjct: 137 KEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDKGNVNLKGQ 196

Query: 193 GQAAQKSACC 202
                   CC
Sbjct: 197 SLTNTGGCCC 206

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  312 bits (802), Expect = e-110
 Identities = 87/186 (46%), Positives = 127/186 (68%), Gaps = 1/186 (0%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
            VGK+  L R++D SFT +F++T+GIDFK++TI  + KRIKLQIWDTAG ER+RTITTAY
Sbjct: 18  SVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAY 77

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   +LVGNK DM E +R V + +G
Sbjct: 78  YRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM-EDERVVSSERG 136

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGV 192
           + LAD  G +FFE SAK N+NV+Q F  +   I ++++++   ++P+     Q  Q    
Sbjct: 137 RQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPAVTGAKQGPQLTDQ 196

Query: 193 GQAAQK 198
                +
Sbjct: 197 QAPPHQ 202

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  307 bits (789), Expect = e-108
 Identities = 104/172 (60%), Positives = 136/172 (79%), Gaps = 3/172 (1%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLLLRF+D ++T S+I+TIG+DFKIRTIELDGK IKLQIWDTAGQERFRTIT++Y
Sbjct: 26  GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 85

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+  +K+ V  +  
Sbjct: 86  YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTA 144

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLAD--TDSRSEPSTIK 182
           +  AD  GI F ETSAK   NVEQ F ++A +IK+R+    T   +E S +K
Sbjct: 145 KEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVK 196

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  306 bits (787), Expect = e-108
 Identities = 111/160 (69%), Positives = 136/160 (85%), Gaps = 1/160 (0%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGK+C+L RFS+ +F ++FI+TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY
Sbjct: 18  GVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 77

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK D+   KR V   +G
Sbjct: 78  YRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV-NDKRQVSKERG 136

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADT 172
           + LA +YGIKF ETSAK N+NVE  FF++ARDIK ++   
Sbjct: 137 EKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKN 176

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  306 bits (785), Expect = e-107
 Identities = 85/160 (53%), Positives = 119/160 (74%), Gaps = 1/160 (0%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
            VGK+  L R++D +FT +F++T+GIDFK++T+    KR+KLQIWDTAGQER+RTITTAY
Sbjct: 33  SVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAY 92

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   +LVGNK DM E +R VPT KG
Sbjct: 93  YRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDM-EEERVVPTEKG 151

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADT 172
           Q LA++ G  FFE SAK N++V Q F  +   I  +++D+
Sbjct: 152 QLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDS 191

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  306 bits (785), Expect = e-107
 Identities = 83/159 (52%), Positives = 117/159 (73%), Gaps = 1/159 (0%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
            VGK+  L R++D SFT +F++T+GIDFK++T+    KRIKLQIWDTAGQER+RTITTAY
Sbjct: 32  SVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAY 91

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGAMG LL+YD+ ++ SF  +++W   I+ ++ DN   +LVGNK D+ E +R VP   G
Sbjct: 92  YRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDL-EDERVVPAEDG 150

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLAD 171
           + LAD+ G +FFE SAK N+NV+QVF  +   I +++ +
Sbjct: 151 RRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNE 189

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  305 bits (784), Expect = e-107
 Identities = 75/161 (46%), Positives = 104/161 (64%), Gaps = 5/161 (3%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
            VGKS  L+R     F  +   T+G+DF+++T+ +DG+R  LQ+WDTAGQERFR+I  +Y
Sbjct: 38  AVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSY 97

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD-----ESKRAV 127
           +R A G+LL+YDVT E SF NIR W+  IE  A + V  +LVGNKAD+      E ++ V
Sbjct: 98  FRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCV 157

Query: 128 PTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
           P   G+ LA  YG  F ETSAK   N+ +    +AR++K+R
Sbjct: 158 PGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKR 198

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  305 bits (783), Expect = e-107
 Identities = 74/167 (44%), Positives = 108/167 (64%), Gaps = 1/167 (0%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGK+CL+ RF+ G F      TIG+DF I+T+E++G+++KLQIWDTAGQERFR+IT +Y
Sbjct: 36  GVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSY 95

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YR A  ++L YD+T E SF  +  W+R IEQ+AS+ V  VLVGNK D+   +R V   + 
Sbjct: 96  YRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDL-AERREVSQQRA 154

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPS 179
           +  ++   + + ETSAK + NVE++F  +A  +          +  S
Sbjct: 155 EEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNNVS 201

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  303 bits (779), Expect = e-107
 Identities = 85/165 (51%), Positives = 119/165 (72%), Gaps = 2/165 (1%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKS LLLRF+D +F+ S+ITTIG+DFKIRT+E++G+++KLQIWDTAGQERFRTIT+ Y
Sbjct: 19  GVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTY 78

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRG  G+++VYDVT   SF N++ W+  I Q+  D+V ++LVGNK D    ++ V T   
Sbjct: 79  YRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDD-PERKVVETEDA 136

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSE 177
              A + GI+ FETSAK N+NVE++F  I   + +   D  ++ +
Sbjct: 137 YKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQQ 181

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  304 bits (780), Expect = e-107
 Identities = 100/158 (63%), Positives = 130/158 (82%), Gaps = 1/158 (0%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLLLRF+D ++T S+I+TIG+DFKIRTIELDGK IKLQIWDTAGQERFRTIT++Y
Sbjct: 43  GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 102

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+  +K+ V  +  
Sbjct: 103 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTA 161

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA 170
           +  AD  GI F ETSAK   NVEQ F ++A +IK+R+ 
Sbjct: 162 KEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 199

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  304 bits (781), Expect = e-107
 Identities = 97/187 (51%), Positives = 137/187 (73%), Gaps = 3/187 (1%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLL+RF +  F  SFITTIGIDFKI+T++++GK++KLQ+WDTAGQERFRTITTAY
Sbjct: 30  GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAY 89

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGAMGI+LVYDVTDE +F NI+ W + + +HA+D    +LVGNK+DM+   R V   +G
Sbjct: 90  YRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQG 147

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGV 192
           +ALA E GI F E+SAK + NV ++FF++A+ I++++         +  + N    +G  
Sbjct: 148 EALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVGVGNGKEGNISINSGS- 206

Query: 193 GQAAQKS 199
           G +++ +
Sbjct: 207 GNSSKSN 213

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  303 bits (778), Expect = e-106
 Identities = 82/161 (50%), Positives = 120/161 (74%), Gaps = 2/161 (1%)

Query: 13  GVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GVGK+CLL+RF DG+F   +FI+T+GIDF+ + +++DG ++KLQ+WDTAGQERFR++T A
Sbjct: 20  GVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHA 79

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YYR A  +LL+YDVT+++SF+NI+ W+  I ++A  +V  +L+GNK D    +R V    
Sbjct: 80  YYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDS-AHERVVKRED 138

Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADT 172
           G+ LA EYG+ F ETSAKT LNV+  F +IA+++K+R    
Sbjct: 139 GEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMKA 179

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  302 bits (776), Expect = e-106
 Identities = 82/157 (52%), Positives = 116/157 (73%), Gaps = 1/157 (0%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLLL+F+D  F      TIG++F  R + +DGK+IKLQIWDTAGQE FR+IT +Y
Sbjct: 31  GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSY 90

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA G LLVYD+T   +FN++ +W+ +  QH+S N+  +L+GNK+D+ ES+R V   +G
Sbjct: 91  YRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDL-ESRRDVKREEG 149

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
           +A A E+G+ F ETSAKT  NVE+ F + A++I +++
Sbjct: 150 EAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKI 186

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  302 bits (775), Expect = e-106
 Identities = 67/158 (42%), Positives = 101/158 (63%), Gaps = 1/158 (0%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGK+ LL RF+   F+    TTIG++F  RT+ L    +K QIWDTAG ER+R IT+AY
Sbjct: 35  GVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAY 94

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA+G LLV+D+T   ++  +  W++ +  HA   +  +LVGNK+D+    R VPT + 
Sbjct: 95  YRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDL-SQAREVPTEEA 153

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA 170
           +  A+  G+ F ETSA  + NVE  F ++ ++I  +++
Sbjct: 154 RMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVS 191

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  301 bits (772), Expect = e-106
 Identities = 94/159 (59%), Positives = 127/159 (79%), Gaps = 2/159 (1%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLL+RF +  F  SFITTIGIDFKI+T++++GK++KLQIWDTAGQERFRTITTAY
Sbjct: 13  GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAY 72

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGAMGI+LVYD+TDE +F NI+ W + + +HA+D    +LVGNK+DM+   R V   +G
Sbjct: 73  YRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQG 130

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLAD 171
           +ALA E GI F E+SAK + NV ++FF++A+ I++++  
Sbjct: 131 EALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  300 bits (771), Expect = e-105
 Identities = 74/158 (46%), Positives = 117/158 (74%), Gaps = 2/158 (1%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGK+ L+ RF+D +F  +  +T+G+DFKI+T+EL GK+I+LQIWDTAGQERF +IT+AY
Sbjct: 36  GVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAY 95

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YR A GI+LVYD+T + +F+++  W++ I+++AS++   +LVGNK D  E+ R +   +G
Sbjct: 96  YRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC-ETDREITRQQG 154

Query: 133 QALADEY-GIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
           +  A +  G++F E SAK N NV+++F  +  DI +++
Sbjct: 155 EKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  301 bits (772), Expect = e-105
 Identities = 74/157 (47%), Positives = 111/157 (70%), Gaps = 2/157 (1%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
            VGK+C++ RF  G+F+    +TIG+DF ++T+E+ GKR+KLQIWDTAGQERFRTIT +Y
Sbjct: 39  SVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSY 98

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YR A G +L YD+T  SSF ++ +WI ++ ++A  N+ ++L+GNK+D+    R V  ++ 
Sbjct: 99  YRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDL-SELREVSLAEA 157

Query: 133 QALADEYGIK-FFETSAKTNLNVEQVFFSIARDIKQR 168
           Q+LA+ Y I    ETSAK + NVE+ F  +A ++  R
Sbjct: 158 QSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMR 194

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  300 bits (771), Expect = e-105
 Identities = 76/172 (44%), Positives = 106/172 (61%), Gaps = 3/172 (1%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKS LLLRF+D +F      TIG+DFK++TI +DG + KL IWDTAGQERFRT+T +Y
Sbjct: 25  GVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSY 84

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN-VNKVLVGNKADMDESKRAVPTSK 131
           YRGA G++LVYDVT   +F  + NW+  +E + + N +  +LVGNK D +   R V  ++
Sbjct: 85  YRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE--NREVDRNE 142

Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKI 183
           G   A ++ + F E SAKT   V+  F  +   I Q     +S ++ S    
Sbjct: 143 GLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNSGPSS 194

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  296 bits (761), Expect = e-104
 Identities = 77/175 (44%), Positives = 116/175 (66%), Gaps = 12/175 (6%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD----------GKRIKLQIWDTAGQ 62
           GVGK+ +L +++DG F + FITT+GIDF+ + +             G+RI LQ+WDTAG 
Sbjct: 21  GVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGL 80

Query: 63  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMD 121
           ERFR++TTA++R AMG LL++D+T+E SF N+RNWI  ++ HA S+N + VL GNK+D+ 
Sbjct: 81  ERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDL- 139

Query: 122 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRS 176
           E +RAV   + + LA++YGI +FETSA    N+      +   I +R+  +  +S
Sbjct: 140 EDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRMERSVDKS 194

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  296 bits (759), Expect = e-103
 Identities = 69/191 (36%), Positives = 107/191 (56%), Gaps = 7/191 (3%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
            VGK+ L+ RF   SF  ++  TIGIDF  +T+ L+ + ++LQ+WDTAG ERFR++  +Y
Sbjct: 26  SVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSY 85

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
            R +   ++VYD+T+ +SF     WI ++      +V  +LVGNK D+   KR V   +G
Sbjct: 86  IRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL-ADKRQVSIEEG 144

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTD-SRSEPSTIKINQPDQAGG 191
           +  A E  + F ETSAK   NV+Q+F  +A  +    +  D SR +   IK+ +P +   
Sbjct: 145 ERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQE--- 201

Query: 192 VGQAAQKSACC 202
             Q   +  C 
Sbjct: 202 --QPVSEGGCL 210

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  294 bits (755), Expect = e-103
 Identities = 70/160 (43%), Positives = 101/160 (63%), Gaps = 6/160 (3%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-TITTA 71
            VGK+CL  RF  G F      TIG+DF+ R +++DG+RIK+Q+WDTAGQERFR ++   
Sbjct: 30  NVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQH 89

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN-VNKVLVGNKADMDESKRAVPTS 130
           YYR    ++ VYD+T+ +SF+++  WI   +QH   N + ++LVGNK D+  S   VPT 
Sbjct: 90  YYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL-RSAIQVPTD 148

Query: 131 KGQALADEYGIKFFETSAKT---NLNVEQVFFSIARDIKQ 167
             Q  AD + +  FETSAK    N +VE +F ++A  +K 
Sbjct: 149 LAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKS 188

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  295 bits (757), Expect = e-103
 Identities = 82/202 (40%), Positives = 118/202 (58%), Gaps = 13/202 (6%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKS LL RF+   F     +TIG++F  RT+E++GKRIK QIWDTAGQER+R IT+AY
Sbjct: 23  GVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAY 82

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA+G L+VYD++  SS+ N  +W+  + ++A DNV   L+GNK+D+    RAVPT + 
Sbjct: 83  YRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDL-AHLRAVPTEES 141

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGV 192
           +  A E  + F ETSA  + NV++ F  +   I Q+++        S+   N    +   
Sbjct: 142 KTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSSANGNANGASAPN 201

Query: 193 G------------QAAQKSACC 202
           G            + A  + CC
Sbjct: 202 GPTISLTPTPNENKKANGNNCC 223

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  293 bits (752), Expect = e-102
 Identities = 75/153 (49%), Positives = 104/153 (67%), Gaps = 1/153 (0%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKS LL RF+   F     +TIG++F  R+I++DGK IK QIWDTAG ER+R IT+AY
Sbjct: 39  GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAY 98

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+    RAVPT + 
Sbjct: 99  YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEA 157

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
           +A A++ G+ F ETSA  + NVE  F +I  +I
Sbjct: 158 RAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  293 bits (752), Expect = e-102
 Identities = 79/185 (42%), Positives = 114/185 (61%), Gaps = 9/185 (4%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKS LL RF+   F     +TIG++F  R+I++DGK IK QIWDTAGQER+R IT+AY
Sbjct: 15  GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAY 74

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+    RAVPT + 
Sbjct: 75  YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEA 133

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL--------ADTDSRSEPSTIKIN 184
           +A A++  + F ETSA  + NVE+ F +I  +I + +        A  D     + + I+
Sbjct: 134 RAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDIS 193

Query: 185 QPDQA 189
            P   
Sbjct: 194 VPPTT 198

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  293 bits (752), Expect = e-102
 Identities = 71/165 (43%), Positives = 99/165 (60%), Gaps = 1/165 (0%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           G GKSCLL +F +  F      TIG++F  R + + GK +KLQIWDTAGQERFR++T +Y
Sbjct: 35  GTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSY 94

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA G LLVYD+T   ++N++  W+ +    AS N+  +L GNK D+ + +R V   + 
Sbjct: 95  YRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDL-DPEREVTFLEA 153

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSE 177
              A E  + F ETSA T  NVE+ F   AR I  ++   +   E
Sbjct: 154 SRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELDPE 198

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  292 bits (749), Expect = e-102
 Identities = 72/165 (43%), Positives = 99/165 (60%), Gaps = 1/165 (0%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           G GKSCLL +F +  F      TIG++F  + I + GK +KLQIWDTAGQERFR++T +Y
Sbjct: 20  GTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSY 79

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA G LLVYD+T   ++N + NW+ +    AS N+  +L GNK D+ ++ R V   + 
Sbjct: 80  YRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL-DADREVTFLEA 138

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSE 177
              A E  + F ETSA T  NVE+ F   AR I  ++   +   E
Sbjct: 139 SRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELDPE 183

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  290 bits (745), Expect = e-101
 Identities = 74/155 (47%), Positives = 104/155 (67%), Gaps = 1/155 (0%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKSCLL +F++  F      TIG++F  R IE+ G++IKLQIWDTAGQERFR +T +Y
Sbjct: 25  GVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSY 84

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA G L+VYD+T  S++N++ +W+ +     + N   +L+GNKAD+ E++R V   + 
Sbjct: 85  YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADL-EAQRDVTYEEA 143

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
           +  A+E G+ F E SAKT  NVE  F   A+ I Q
Sbjct: 144 KQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  289 bits (742), Expect = e-101
 Identities = 58/156 (37%), Positives = 87/156 (55%), Gaps = 2/156 (1%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
            VGKS ++ R+  G FT  +  TIG+DF  R I+++ + ++L +WDTAGQE F  IT AY
Sbjct: 15  AVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAY 74

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA   +LV+  TD  SF  I +W   +      ++   LV NK D+      +   + 
Sbjct: 75  YRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDL-LDDSCIKNEEA 132

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
           + LA    ++F+ TS K +LNV +VF  +A    Q+
Sbjct: 133 EGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  289 bits (741), Expect = e-101
 Identities = 59/155 (38%), Positives = 95/155 (61%), Gaps = 1/155 (0%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
            VGK+ L+LR+ +  F    ITT+G  F  + + + GKR+ L IWDTAGQERF  +   Y
Sbjct: 16  CVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIY 75

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YR + G +LVYD+TDE SF  ++NW++ + +   + +   +VGNK D+ E +R V   + 
Sbjct: 76  YRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL-EKERHVSIQEA 134

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
           ++ A+  G K + TSAK N  +E++F  + + + +
Sbjct: 135 ESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  290 bits (745), Expect = e-101
 Identities = 73/178 (41%), Positives = 115/178 (64%), Gaps = 12/178 (6%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK----------RIKLQIWDTAGQ 62
           GVGK+  L R++D  F   FITT+GIDF+ + +  + +          ++ LQ+WDTAGQ
Sbjct: 35  GVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ 94

Query: 63  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMD 121
           ERFR++TTA++R AMG LL++D+T + SF N+RNW+  ++ +A  +N + VL+GNKAD+ 
Sbjct: 95  ERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADL- 153

Query: 122 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPS 179
             +R V   + + LAD+YGI +FETSA T  NVE+   ++   I +R+     +++  
Sbjct: 154 PDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQCVEKTQIP 211

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  284 bits (730), Expect = 1e-99
 Identities = 59/155 (38%), Positives = 88/155 (56%), Gaps = 1/155 (0%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKS ++ RF + SF  +   TIG  F  +T++   +  K  IWDTAG ERFR +   Y
Sbjct: 16  GVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMY 75

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRG+   ++VYD+T E +F+ ++NW+R + QH   ++   + GNK D+    R V     
Sbjct: 76  YRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDL-TDVREVMERDA 134

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
           +  AD     F ETSAK  +N+ ++F  I+R I  
Sbjct: 135 KDYADSIHAIFVETSAKNAININELFIEISRRIPS 169

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  285 bits (731), Expect = 3e-99
 Identities = 65/195 (33%), Positives = 111/195 (56%), Gaps = 11/195 (5%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGK+ L+ ++ +  F+  +  TIG DF  + + +D + + +QIWDTAGQERF+++  A+
Sbjct: 18  GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAF 77

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAVP 128
           YRGA   +LV+DVT  ++F  + +W       AS    +N   V++GNK D+ E+++   
Sbjct: 78  YRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL-ENRQVAT 136

Query: 129 TSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSE-PSTIKINQPD 187
                    +  I +FETSAK  +NVEQ F +IAR+  ++  + +  +E P  IK+++ +
Sbjct: 137 KRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNE 196

Query: 188 QAGGVGQAAQKSACC 202
           +A          +C 
Sbjct: 197 RAKA-----SAESCS 206

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  283 bits (726), Expect = 7e-99
 Identities = 61/155 (39%), Positives = 94/155 (60%), Gaps = 1/155 (0%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           G GKS L+LRF    F     +TIG  F  +T+ ++   +K +IWDTAGQER+ ++   Y
Sbjct: 22  GAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMY 81

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA   ++V+DVT+++SF   + W++ ++   + N+   L GNK+D+    R V     
Sbjct: 82  YRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDL-LDARKVTAEDA 140

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
           Q  A E G+ F ETSAKT  NV+++F+ IAR + +
Sbjct: 141 QTYAQENGLFFMETSAKTATNVKEIFYEIARRLPR 175

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  282 bits (724), Expect = 1e-98
 Identities = 69/155 (44%), Positives = 103/155 (66%), Gaps = 1/155 (0%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
            VGKS L+LRF  G F     +TIG  F  +T+ LD   +K +IWDTAGQER+ ++   Y
Sbjct: 16  AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMY 75

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRGA   ++VYD+T+E SF   +NW++ +++ AS N+   L GNKAD+  +KRAV   + 
Sbjct: 76  YRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-ANKRAVDFQEA 134

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
           Q+ AD+  + F ETSAKT++NV ++F +IA+ + +
Sbjct: 135 QSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  283 bits (726), Expect = 1e-98
 Identities = 57/156 (36%), Positives = 88/156 (56%), Gaps = 1/156 (0%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKS ++ RF    F  +   TIG  F  +T+    +  K  IWDTAGQERF ++   Y
Sbjct: 33  GVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMY 92

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
           YRG+   ++VYD+T + SF  ++ W++ +++H  +N+   + GNK D+    R VP    
Sbjct: 93  YRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDL-SDIREVPLKDA 151

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
           +  A+  G    ETSAK  +N+E++F  I+R I   
Sbjct: 152 KEYAESIGAIVVETSAKNAINIEELFQGISRQIPPL 187

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  280 bits (720), Expect = 5e-98
 Identities = 63/153 (41%), Positives = 96/153 (62%), Gaps = 1/153 (0%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
            VGK+ L+ RF   SF  ++  TIGIDF  +T+ L+ + ++LQ+WDTAGQERFR++  +Y
Sbjct: 24  SVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY 83

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
            R +   ++VYD+T+ +SF+    WI ++      +V  +LVGNK D+   KR V T +G
Sbjct: 84  IRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDL-SDKRQVSTEEG 142

Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
           +  A E  + F ETSAK   NV+Q+F  +A  +
Sbjct: 143 ERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  280 bits (719), Expect = 3e-97
 Identities = 50/193 (25%), Positives = 88/193 (45%), Gaps = 5/193 (2%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIG-IDFKIRTIELDGKRIKLQIWDTAGQERFRTITT 70
           GGVGK+  + R  DG F  ++  T+G ++  +  ++  G  IK  +WDTAGQE+   +  
Sbjct: 20  GGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKD 79

Query: 71  AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS 130
            YY GA G +L +DVT   +  N+  W++  +    +    V+  NK D+ ++++ +   
Sbjct: 80  VYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDI-KNRQKISKK 138

Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA---DTDSRSEPSTIKINQPD 187
               +      ++FE SAKT  N    F  +AR    R      ++   EP+ +  +   
Sbjct: 139 LVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNLEPTEVNYDYHS 198

Query: 188 QAGGVGQAAQKSA 200
                     + A
Sbjct: 199 PEESKYIDYMEQA 211

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  275 bits (705), Expect = 1e-95
 Identities = 64/161 (39%), Positives = 90/161 (55%), Gaps = 7/161 (4%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
           GVGKS L+ R+    F T    TIG++F  + +E+DG  + +QIWDTAGQERFR++ T +
Sbjct: 17  GVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPF 76

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAVP 128
           YRG+   LL + V D  SF N+ NW +    +A     ++   V++GNK D+ E  R V 
Sbjct: 77  YRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE--RQVS 134

Query: 129 TSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIARDIKQR 168
           T + QA   + G   +FETSAK   NV   F    R +   
Sbjct: 135 TEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 175

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  274 bits (704), Expect = 2e-95
 Identities = 68/162 (41%), Positives = 98/162 (60%), Gaps = 6/162 (3%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR-IKLQIWDTAGQERFRTITTA 71
           GVGK+ L+ R+ +  ++  +  TIG DF  + + +DG +   +Q+WDTAGQERF+++  A
Sbjct: 18  GVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVA 77

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAV 127
           +YRGA   +LVYDVT+ SSF NI++W      HA+    +    V++GNK D +ESK+ V
Sbjct: 78  FYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIV 137

Query: 128 PTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIARDIKQR 168
                Q LA   G I  F TSAK  +NV+  F  IAR   Q+
Sbjct: 138 SEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 179

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  274 bits (702), Expect = 3e-95
 Identities = 54/157 (34%), Positives = 76/157 (48%), Gaps = 5/157 (3%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK-RIKLQIWDTAGQERFRTITTA 71
             GK+ L   F+  +F   +  TIG+DF +R I L G   + LQIWD  GQ     +   
Sbjct: 16  ASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDK 75

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ---HASDNVNKVLVGNKADMDESKRAVP 128
           Y  GA G+LLVYD+T+  SF N+ +W   +++    +       LVGNK D+ E  R + 
Sbjct: 76  YIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDL-EHMRTIK 134

Query: 129 TSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
             K      E G      SAKT  +V   F  +A +I
Sbjct: 135 PEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  269 bits (689), Expect = 7e-93
 Identities = 40/167 (23%), Positives = 73/167 (43%), Gaps = 8/167 (4%)

Query: 13  GVGKSCLLLRFSD--GSFTTSFITTIGIDFKIRTIELDGKRIKLQIW--DTAGQERFRTI 68
            VGKS L+  F+     F   +  T G++  +  + +    + ++++  DTAG + ++  
Sbjct: 30  TVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQ 89

Query: 69  TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ---HASDNVNKVLVGNKADMDESKR 125
            + Y+ G    +LV+DV+   SF + + W   ++         +  VLV NK D+   + 
Sbjct: 90  ISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRH 149

Query: 126 AVPTSKGQALADEYGIKFFETSAK-TNLNVEQVFFSIARDIKQRLAD 171
            V     Q  A    + FF+ SA     + +  F SIA    +   D
Sbjct: 150 QVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYED 196

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  265 bits (680), Expect = 2e-91
 Identities = 49/181 (27%), Positives = 88/181 (48%), Gaps = 7/181 (3%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GG GK+  + R   G F   ++ T+G++        +   IK  +WDTAGQE+F  +   
Sbjct: 24  GGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDG 83

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YY  A   ++++DVT   ++ N+ NW R++ +   +N+  VL GNK D+ + K     +K
Sbjct: 84  YYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRK---VKAK 139

Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA---DTDSRSEPSTIKINQPDQ 188
                 +  +++++ SAK+N N E+ F  +AR +               P  + ++    
Sbjct: 140 SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALA 199

Query: 189 A 189
           A
Sbjct: 200 A 200

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  259 bits (664), Expect = 5e-89
 Identities = 60/192 (31%), Positives = 99/192 (51%), Gaps = 11/192 (5%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L L+F    F   +  T    ++ + + LDG+ +++ I DTAGQE +  I   
Sbjct: 23  GGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDN 81

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTS 130
           Y+R   G L V+ +T+  SF    ++   I +    +NV  +LVGNK+D+ E KR V   
Sbjct: 82  YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL-EDKRQVSVE 140

Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAG 190
           + +  A+++ + + ETSAKT  NV++VFF + R+I+ R  +          + +   +  
Sbjct: 141 EAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDSKEKNGKKKRKSLAKR-- 198

Query: 191 GVGQAAQKSACC 202
                  +  CC
Sbjct: 199 ------IRERCC 204

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  258 bits (662), Expect = 7e-89
 Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 3/159 (1%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-TITT 70
            GVGKS L   F      ++       D   R I +D + + L ++D   Q      +  
Sbjct: 32  SGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRD 91

Query: 71  AYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKVLVGNKADMDESKRAVPT 129
              +     L+V+ VTD  SF+ +   +  +       ++  +LVGNK+D+    R V  
Sbjct: 92  HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL-ARSREVSL 150

Query: 130 SKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
            +G+ LA     K  ETSA  + N  ++F    R I+ R
Sbjct: 151 EEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 189

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  255 bits (655), Expect = 3e-88
 Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 3/159 (1%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-TITT 70
            GVGKS L   F       +       D   R I +D + + L ++D   Q      +  
Sbjct: 11  SGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQD 70

Query: 71  AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPT 129
              +     L+V+ VTD  SF+ +   +  +       ++  +LVGNK+D+    R V  
Sbjct: 71  HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL-ARSREVSL 129

Query: 130 SKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
            +G+ LA     K  ETSA  + N  ++F    R I+ R
Sbjct: 130 EEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  253 bits (649), Expect = 4e-87
 Identities = 60/158 (37%), Positives = 84/158 (53%), Gaps = 3/158 (1%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L ++F    F + +  TI  D   +   +DG   +L I DTAGQE F  +   
Sbjct: 18  GGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQ 76

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKVLVGNKADMDESKRAVPTS 130
           Y R   G LLV+ + D  SFN +      I      D+   VLVGNKAD+ ES+R VP S
Sbjct: 77  YMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL-ESQRQVPRS 135

Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
           +  A    + + +FE SAK  LNV++ F  + R +++ 
Sbjct: 136 EASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKY 173

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  252 bits (645), Expect = 2e-86
 Identities = 58/158 (36%), Positives = 92/158 (58%), Gaps = 3/158 (1%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L L+F    F   +  T    ++ + + LDG+ +++ I DTAGQE +  I   
Sbjct: 27  GGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDN 85

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTS 130
           Y+R   G L V+ +T+  SF    ++   I +    +NV  +LVGNK+D+ E KR V   
Sbjct: 86  YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL-EDKRQVSVE 144

Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
           + +  A+++ + + ETSAKT  NV++VFF + R+I+ R
Sbjct: 145 EAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 182

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  251 bits (643), Expect = 2e-86
 Identities = 59/158 (37%), Positives = 92/158 (58%), Gaps = 3/158 (1%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L L+F    F   +  T    ++ + + LDG+ +++ I DTAGQE +  I   
Sbjct: 13  GGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDN 71

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTS 130
           Y+R   G L V+ +T+  SF    ++   I +    +NV  +LVGNK+D+ E KR V   
Sbjct: 72  YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL-EDKRQVSVE 130

Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
           + +  AD++ + + ETSAKT  NV++VFF + R+I+ R
Sbjct: 131 EAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  250 bits (641), Expect = 7e-86
 Identities = 51/158 (32%), Positives = 79/158 (50%), Gaps = 3/158 (1%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
             VGKS L ++F +G F  S+  TI   F  + I ++G+   LQ+ DTAGQ+ +      
Sbjct: 15  RSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDEYSIFPQT 73

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKVLVGNKADMDESKRAVPTS 130
           Y     G +LVY VT   SF  I+     + +      +  +LVGNK D+   +R +   
Sbjct: 74  YSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL-HMERVISYE 132

Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
           +G+ALA+ +   F E+SAK N     VF  I  + ++ 
Sbjct: 133 EGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKM 170

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  249 bits (639), Expect = 1e-85
 Identities = 57/159 (35%), Positives = 88/159 (55%), Gaps = 4/159 (2%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L ++F    F   +  TI  D  ++  E+D +   L + DTAGQE F  +   
Sbjct: 27  GGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQ 85

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTS 130
           Y R   G L+VY VTD++SF ++  + + I +    ++   +LV NK D+    R V   
Sbjct: 86  YMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDL-MHLRKVTRD 144

Query: 131 KGQALADEYGIKFFETSAKTN-LNVEQVFFSIARDIKQR 168
           +G+ +A +Y I + ETSAK   LNV++ F  + R I+Q+
Sbjct: 145 QGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  248 bits (636), Expect = 2e-85
 Identities = 62/156 (39%), Positives = 93/156 (59%), Gaps = 3/156 (1%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L ++F  G+F   +  TI  DF  + IE+D     L+I DTAG E+F ++   
Sbjct: 12  GGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDL 70

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKVLVGNKADMDESKRAVPTS 130
           Y +   G +LVY + ++ SF +I+     I      + V  +LVGNK D+ ES+R V +S
Sbjct: 71  YIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL-ESEREVSSS 129

Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIK 166
           +G+ALA+E+G  F ETSAK+   V+++F  I R + 
Sbjct: 130 EGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  249 bits (639), Expect = 3e-85
 Identities = 49/158 (31%), Positives = 82/158 (51%), Gaps = 3/158 (1%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
             VGK+ L  +F +G F+  +  T+   +  + + L      L + DTAGQ+ +  +  +
Sbjct: 33  RCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGKDEFHLHLVDTAGQDEYSILPYS 91

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKVLVGNKADMDESKRAVPTS 130
           +  G  G +LVY VT   SF  I +  + + E H    V  VLVGNKAD+   +R V   
Sbjct: 92  FIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADL-SPEREVQAV 150

Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
           +G+ LA+ +G  F E+SA+ N   + +F  + ++I + 
Sbjct: 151 EGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARV 188

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  248 bits (635), Expect = 8e-85
 Identities = 60/158 (37%), Positives = 86/158 (54%), Gaps = 4/158 (2%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L ++     F   +  TI   ++ + + +DG+   L I DTAGQE +  +   
Sbjct: 30  GGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQ 88

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTS 130
           Y R   G L V+ + +  SF +I  +   I++   SD+V  VLVGNK D+    R V T 
Sbjct: 89  YMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT--RTVDTK 146

Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
           +   LA  YGI F ETSAKT   VE  F+++ R+I+Q 
Sbjct: 147 QAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQY 184

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  247 bits (632), Expect = 1e-84
 Identities = 59/157 (37%), Positives = 87/157 (55%), Gaps = 4/157 (2%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L ++     F      TI   ++ + + +DG+   L I DTAGQE +  +   
Sbjct: 12  GGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQ 70

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTS 130
           Y R   G L V+ + +  SF +I  +   I++   SD+V  VLVGNK+D+    R V + 
Sbjct: 71  YMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA--RTVESR 128

Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
           + Q LA  YGI + ETSAKT   VE  F+++ R+I+Q
Sbjct: 129 QAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  247 bits (634), Expect = 1e-84
 Identities = 57/182 (31%), Positives = 88/182 (48%), Gaps = 5/182 (2%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L+LRF  G+F  ++I TI   ++ + I  D     LQI DT G  +F  +   
Sbjct: 17  GGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRL 75

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ--HASDNVNKVLVGNKADMDESKRAVPT 129
                   +LV+ VT + S   +    + I Q   + +++  +LVGNK D  +  R V T
Sbjct: 76  SISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ--REVDT 133

Query: 130 SKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQA 189
            + QA+A E+   F ETSAK N NV+++F  +     +R    +   + S  +       
Sbjct: 134 REAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNIDGKRSGKQKRTDRVK 193

Query: 190 GG 191
           G 
Sbjct: 194 GK 195

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  245 bits (628), Expect = 4e-84
 Identities = 54/159 (33%), Positives = 81/159 (50%), Gaps = 4/159 (2%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L+LRF  G+F  S+I T+   ++ + I  D     LQI DT G  +F  +   
Sbjct: 12  GGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRL 70

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA--SDNVNKVLVGNKADMDESKRAVPT 129
                   +LVY +T   S   ++     I +     +++  +LVGNK D     R V +
Sbjct: 71  SISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDE-SPSREVQS 129

Query: 130 SKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
           S+ +ALA  +   F ETSAK N NV+++F  +    K+R
Sbjct: 130 SEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRR 168

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  245 bits (629), Expect = 6e-84
 Identities = 58/172 (33%), Positives = 89/172 (51%), Gaps = 4/172 (2%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
            GVGKS L ++     F   +  TI   ++ + + +DG+   L I DTAGQE +  +   
Sbjct: 13  DGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQ 71

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTS 130
           Y R   G L V+ + +  SF +I ++   I++   S++V  VLVGNK D+    R V T 
Sbjct: 72  YMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS--RTVDTK 129

Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIK 182
           + Q LA  YGI F ETSAKT   V+  F+++ R+I++         +    K
Sbjct: 130 QAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDGKKKKKK 181

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  242 bits (620), Expect = 6e-83
 Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 4/158 (2%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
            GVGKS L   F  G          G  +  R+I +DG+   L ++D   Q+  R +   
Sbjct: 11  PGVGKSALARIFG-GVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQDGGRWLPGH 68

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTS 130
                   ++VY VTD+ SF         + +   +D+V  +LVGNK+D+    R V   
Sbjct: 69  CMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL-VRSREVSVD 127

Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
           +G+A A  +  KF ETSA  + NV+ +F  + R I+ R
Sbjct: 128 EGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  240 bits (616), Expect = 3e-82
 Identities = 56/158 (35%), Positives = 95/158 (60%), Gaps = 4/158 (2%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L ++F  G F   +  TI   ++ + +E+D ++  L+I DTAG E+F  +   
Sbjct: 12  GGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDL 70

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTS 130
           Y +   G  LVY +T +S+FN++++    I +   +++V  +LVGNK D+ E +R V   
Sbjct: 71  YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL-EDERVVGKE 129

Query: 131 KGQALADEY-GIKFFETSAKTNLNVEQVFFSIARDIKQ 167
           +GQ LA ++    F E+SAK+ +NV ++F+ + R I +
Sbjct: 130 QGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  240 bits (614), Expect = 7e-82
 Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 5/164 (3%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITT- 70
            GVGK+ L   F+              D   RT+ +DG+   L + DT   E+     + 
Sbjct: 13  PGVGKTSLASLFAGKQERDLHEQLG-EDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQ 71

Query: 71  -AYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKVLVGNKADMDESKRAVP 128
            +  +G    ++VY + D  SF +       +   H +D+V  +LVGNKAD+    R V 
Sbjct: 72  ESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADL-ARCREVS 130

Query: 129 TSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADT 172
             +G+A A  +  KF ETSA    NV ++F  + R ++ R  D+
Sbjct: 131 VEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRRRDS 174

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  237 bits (606), Expect = 3e-80
 Identities = 54/196 (27%), Positives = 90/196 (45%), Gaps = 41/196 (20%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIK------------------- 53
            VGKS ++LR +  +F  +  TTIG  F    + L+   IK                   
Sbjct: 17  SVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNN 76

Query: 54  ------------------LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIR 95
                               IWDTAGQER+ +I   YYRGA   ++V+D+++ ++ +  +
Sbjct: 77  VIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAK 136

Query: 96  NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE 155
            W+  +    S N   +LV NK D +  K  V   + Q  A +  + F +TSAKT  N++
Sbjct: 137 TWVNQL--KISSNYIIILVANKIDKN--KFQVDILEVQKYAQDNNLLFIQTSAKTGTNIK 192

Query: 156 QVFFSIARDIKQRLAD 171
            +F+ +A +I + + +
Sbjct: 193 NIFYMLAEEIYKNIIN 208

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  233 bits (596), Expect = 8e-79
 Identities = 53/159 (33%), Positives = 86/159 (54%), Gaps = 5/159 (3%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
            GVGKS L++RF    F   +  T+   ++     +D + + ++I DTAGQE        
Sbjct: 37  AGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDTAGQEDTIQ-REG 94

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTS 130
           + R   G +LVYD+TD  SF  +      +++     NV  +LVGNKAD+ +  R V T 
Sbjct: 95  HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADL-DHSRQVSTE 153

Query: 131 KGQALADEYGIKFFETSAKTN-LNVEQVFFSIARDIKQR 168
           +G+ LA E    F+E SA T   N+ ++F+ + R++++R
Sbjct: 154 EGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR 192

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  231 bits (591), Expect = 2e-78
 Identities = 66/158 (41%), Positives = 92/158 (58%), Gaps = 2/158 (1%)

Query: 13  GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
            VGKS ++LRF    F  +   TIG  F  + + ++   +K +IWDTAGQERF ++   Y
Sbjct: 13  AVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXY 72

Query: 73  YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD--MDESKRAVPTS 130
           YR A   L+VYDVT   SF   R+W++ + + AS ++   LVGNK D   +  +R V   
Sbjct: 73  YRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVARE 132

Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
           +G+ LA+E G+ FFETSAKT  NV  VF  I   I  +
Sbjct: 133 EGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  227 bits (582), Expect = 1e-76
 Identities = 49/162 (30%), Positives = 80/162 (49%), Gaps = 8/162 (4%)

Query: 12  GGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKR---IKLQIWDTAGQERFRT 67
            GVGKS L   F+    +  S    +G D   RT+ +DG+    I L +W+  G+  +  
Sbjct: 46  QGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW-- 103

Query: 68  ITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKVLVGNKADMDESKRA 126
           +     +     L+VY +TD +SF         +     ++++  +LVGNK+D+    R 
Sbjct: 104 LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL-VRCRE 162

Query: 127 VPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
           V  S+G+A A  +  KF ETSA    NV+++F  I R ++ R
Sbjct: 163 VSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 204

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  223 bits (571), Expect = 4e-75
 Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 10/160 (6%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
              GKS L+ R+  G++        G  FK + I +DG+   L I D  G    +     
Sbjct: 29  LSSGKSALVHRYLTGTYVQEESPEGG-RFK-KEIVVDGQSYLLLIRDEGGPPELQ----- 81

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMD-ESKRAVPT 129
           +      ++ V+ + DE SF  + N+   +     +  V  VLVG +  +   + R +  
Sbjct: 82  FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDD 141

Query: 130 SKGQALADEYG-IKFFETSAKTNLNVEQVFFSIARDIKQR 168
           S+ + L+ +     ++ET A   LNVE+VF  +A+ +   
Sbjct: 142 SRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVAL 181

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  221 bits (566), Expect = 2e-74
 Identities = 45/160 (28%), Positives = 78/160 (48%), Gaps = 7/160 (4%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
            G GKS L ++F    F + +   +   +      +D + + L++ DTA  +  R     
Sbjct: 30  RGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVDHQPVHLRVMDTADLDTPRNCER- 87

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD---NVNKVLVGNKADMDESKRAVP 128
           Y   A   L+VY V    SF++  +++  +  HA +   ++  +L+GNK DM    R V 
Sbjct: 88  YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDM-AQYRQVT 146

Query: 129 TSKGQALADEYGIKFFETSAKTNL-NVEQVFFSIARDIKQ 167
            ++G ALA  +G  FFE SA  +  +V+ VF    R+ ++
Sbjct: 147 KAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARR 186

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  220 bits (563), Expect = 5e-74
 Identities = 39/169 (23%), Positives = 76/169 (44%), Gaps = 14/169 (8%)

Query: 12  GGVGKSCLLLRFSDGSFTT--SFITTIGIDFKIRTIELDGKR---IKLQIWDTAGQERFR 66
            G GK+ LL +      +       T+GID K   I++  KR   + L +WD AG+E F 
Sbjct: 11  TGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFY 70

Query: 67  TITTAYYRGAMGILLVYDVTD-ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK- 124
           +    +       L VYD++  ++  + ++ W+ NI+  AS +   +LVG   D+ + K 
Sbjct: 71  STHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSP-VILVGTHLDVSDEKQ 129

Query: 125 -RAVPTSKGQALADEYGI-----KFFETSAKTNLNVEQVFFSIARDIKQ 167
            +A  +   + L ++ G        F  + + +  + ++  +I  +   
Sbjct: 130 RKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN 178

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  219 bits (560), Expect = 2e-73
 Identities = 49/162 (30%), Positives = 80/162 (49%), Gaps = 8/162 (4%)

Query: 12  GGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKR---IKLQIWDTAGQERFRT 67
            GVGKS L   F+    +  S    +G D   RT+ +DG+    I L +W+  G+  +  
Sbjct: 15  QGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEW-- 72

Query: 68  ITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKVLVGNKADMDESKRA 126
           +     +     L+VY +TD +SF         +     ++++  +LVGNK+D+    R 
Sbjct: 73  LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL-VRXRE 131

Query: 127 VPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
           V  S+G+A A  +  KF ETSA    NV+++F  I R ++ R
Sbjct: 132 VSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLR 173

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  204 bits (520), Expect = 2e-67
 Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 12/162 (7%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
              GKS L+ RF  GS+      T    +K + + +DG+   + I + AG    +     
Sbjct: 16  ARSGKSSLIHRFLTGSYQ-VLEKTESEQYK-KEMLVDGQTHLVLIREEAGAPDAK----- 68

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNW---IRNIEQHASDNVNKVLVGNKADMD-ESKRAV 127
           +   A  ++ V+ + DE+SF  +      + ++       +   LVG +  +   S R V
Sbjct: 69  FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVV 128

Query: 128 PTSKGQAL-ADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
             ++ +AL AD     ++ET A   LNV++VF  +A+ +   
Sbjct: 129 GDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTL 170

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  190 bits (483), Expect = 4e-58
 Identities = 32/164 (19%), Positives = 58/164 (35%), Gaps = 13/164 (7%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL--------DGKRIKLQIWDTAGQE 63
           G  GK+ LL +    +F      T G++   +            + K      WD  GQE
Sbjct: 50  GMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQE 109

Query: 64  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 123
                   +   +   +L+ D     + +N   W+R+IE++   +   ++V NK D +  
Sbjct: 110 IMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKYGGKSP-VIVVMNKIDENP- 164

Query: 124 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
              +   K          +F   S K    VE +  S+   +  
Sbjct: 165 SYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLH 208

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  177 bits (452), Expect = 4e-57
 Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 5/155 (3%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLLL FS G   T+++ T+  +F    ++   +   L +WDTAGQE +  +   
Sbjct: 32  GAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLRPL 90

Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM-DESKRAVPT 129
            Y  +  +LL + V + +SF+NI   W   I +H  D    VLVG K D+  +    V  
Sbjct: 91  SYADSDVVLLCFAVNNRTSFDNISTKWEPEI-KHYIDTAKTVLVGLKVDLRKDGSDDVTK 149

Query: 130 SKGQALADEYG-IKFFETSAKTNLNVEQVFFSIAR 163
            +G  L  + G + + E S+   + + +VF     
Sbjct: 150 QEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVD 184

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  163 bits (414), Expect = 4e-51
 Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 15/165 (9%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GG GK+ LL+ F+DG+F  S+  T+   + +  +++ GK + L IWDTAGQ+ +  +   
Sbjct: 43  GGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPL 101

Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDESK------ 124
           +Y  A  +LL +DVT  +SF+NI N W   +  H    V  ++VG K D+ + K      
Sbjct: 102 FYPDASVLLLCFDVTSPNSFDNIFNRWYPEV-NHFCKKVPIIVVGCKTDLRKDKSLVNKL 160

Query: 125 -----RAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIAR 163
                  V   +GQ +A   G + + E SA+ + NV  VF   A 
Sbjct: 161 RRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAE 205

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  162 bits (411), Expect = 5e-51
 Identities = 50/163 (30%), Positives = 87/163 (53%), Gaps = 13/163 (7%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+ ++  +F T ++ T+  +F    + ++G  + L +WDTAGQE +  +   
Sbjct: 17  GAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQEDYNRLRPL 75

Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDESKRA---- 126
            YRGA   +L + +  ++S+ N+   WI  + +H +  V  VLVG K D+ + K+     
Sbjct: 76  SYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIVLVGTKLDLRDDKQFFIDH 134

Query: 127 -----VPTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIAR 163
                + T +G+ L    G   + E S+K+  NV+ VF +  R
Sbjct: 135 PGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIR 177

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  157 bits (399), Expect = 6e-49
 Identities = 51/165 (30%), Positives = 79/165 (47%), Gaps = 15/165 (9%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G  GK+CLL+ FS   F   ++ T+  +  I  IE+DGK+++L +WDTAGQE +  +   
Sbjct: 34  GACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVELALWDTAGQEDYDRLRPL 92

Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
            Y     IL+ + +    S  NI   W   ++     NV  +LVGNK D+          
Sbjct: 93  SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRQDEHTRREL 151

Query: 121 -DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIAR 163
               +  V + +G+ +A+      + E SAKT   V +VF    R
Sbjct: 152 AKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 196

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  154 bits (391), Expect = 1e-47
 Identities = 52/165 (31%), Positives = 80/165 (48%), Gaps = 15/165 (9%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G  GK+CLL+ FS   F   ++ T+  ++ +  IE+DGK+++L +WDTAGQE +  +   
Sbjct: 34  GACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPL 92

Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
            Y     IL+ + V    S  NI   W+  ++     NV  +LV NK D+          
Sbjct: 93  SYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTEL 151

Query: 121 -DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIAR 163
               +  V T  G+A+A       + E SAKT   V +VF +  R
Sbjct: 152 ARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATR 196

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  151 bits (382), Expect = 2e-46
 Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 15/160 (9%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+ ++  +F   +I T+  D     + +DGK + L +WDTAGQE +  +   
Sbjct: 39  GAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPL 97

Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
            Y      L+ + +   +SF N+R  W   + +H   N   +LVG K D+          
Sbjct: 98  SYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRDDKDTIEKL 156

Query: 121 -DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
            ++    +   +G A+A E G +K+ E SA T   ++ VF
Sbjct: 157 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  152 bits (385), Expect = 3e-46
 Identities = 44/221 (19%), Positives = 74/221 (33%), Gaps = 67/221 (30%)

Query: 12  GGVGKSCLLLRF---SDGSFTTSFITTIG-IDFKIRTIELD--------------GKRIK 53
            G+GKSCL  RF   S   F     + +   DF  R +  D                  K
Sbjct: 37  CGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK 96

Query: 54  LQIW-------DTAGQERFRTITTAYYRGAM----------------------------- 77
           + I        D   Q    T    Y + A                              
Sbjct: 97  MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQM 156

Query: 78  --------GILLVYDVT--DESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRA 126
                   G LL  DV+     +F++   ++ N+    +      V+V  K D    +R 
Sbjct: 157 PDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDE-GVERY 215

Query: 127 VPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
           +  +   AL+ +  ++  ETSA++N+NV+  F ++ + I +
Sbjct: 216 IRDAHTFALSKK-NLQVVETSARSNVNVDLAFSTLVQLIDK 255

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  147 bits (374), Expect = 4e-45
 Identities = 48/163 (29%), Positives = 87/163 (53%), Gaps = 11/163 (6%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+C+L+ ++   F T +I T+  D     + +DG+ + L +WDTAGQE +  +   
Sbjct: 18  GAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPL 76

Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM-------DES 123
            YRGA   +L + +  ++S+ N+   W+  + +  + NV  VLVG K D+        + 
Sbjct: 77  SYRGADIFVLAFSLISKASYENVLKKWMPEL-RRFAPNVPIVLVGTKLDLRDDKGYLADH 135

Query: 124 KRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIARDI 165
              + +++G+ L  + G   + E S+KT  NV+ VF +  + +
Sbjct: 136 TNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 178

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  144 bits (364), Expect = 6e-44
 Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 15/165 (9%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+ ++  +F   +I T+  D     + +DGK + L +WDTAGQE +  +   
Sbjct: 14  GAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPL 72

Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
            Y      L+ + +   +SF N+R  W   +  H   N   +LVG K D+          
Sbjct: 73  SYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 131

Query: 121 -DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIAR 163
            ++    +   +G A+A E G +K+ E SA T   ++ VF    R
Sbjct: 132 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 176

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  143 bits (362), Expect = 2e-43
 Identities = 37/161 (22%), Positives = 76/161 (47%), Gaps = 16/161 (9%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
              GK+ LL  F+   F  +++ T+  ++   + E+D +RI+L +WDT+G   +  +   
Sbjct: 37  SQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWDTSGSPYYDNVRPL 95

Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
            Y  +  +L+ +D++   + +++   W   I++    N   +LVG K+D+          
Sbjct: 96  SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVSTLVEL 154

Query: 121 -DESKRAVPTSKGQALADEYG-IKFFETSAKTNLN-VEQVF 158
            +  +  V   +G  +A + G   + E SA  + N V  +F
Sbjct: 155 SNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 195

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  142 bits (360), Expect = 2e-43
 Identities = 37/161 (22%), Positives = 76/161 (47%), Gaps = 16/161 (9%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
              GK+ LL  F+   F  +++ T+  ++   + E+D +RI+L +WDT+G   +  +   
Sbjct: 16  SQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWDTSGSPYYDNVRPL 74

Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
            Y  +  +L+ +D++   + +++   W   I++    N   +LVG K+D+          
Sbjct: 75  SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVSTLVEL 133

Query: 121 -DESKRAVPTSKGQALADEYG-IKFFETSAKTNLN-VEQVF 158
            +  +  V   +G  +A + G   + E SA  + N V  +F
Sbjct: 134 SNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 174

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  142 bits (360), Expect = 4e-43
 Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 15/160 (9%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+ L++ ++   + T +I T   D     + +DG+ ++LQ+ DTAGQ+ F  +   
Sbjct: 29  GAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPL 87

Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
            Y      LL + V   SSF N+   W+  I +        +LVG ++D+          
Sbjct: 88  CYTNTDIFLLCFSVVSPSSFQNVSEKWVPEI-RCHCPKAPIILVGTQSDLREDVKVLIEL 146

Query: 121 -DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
               ++ VP    + LA+E     + E SA T  N+++VF
Sbjct: 147 DKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  139 bits (351), Expect = 1e-41
 Identities = 31/179 (17%), Positives = 79/179 (44%), Gaps = 16/179 (8%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
              GK+ +L   +   +  +++ T+  ++    +E + +R++L +WDT+G   +  +   
Sbjct: 36  VQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPL 94

Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
            Y  +  +LL +D++   + ++    W   I  +   +   +L+G K D+          
Sbjct: 95  CYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMEL 153

Query: 121 -DESKRAVPTSKGQALADEYG-IKFFETSAKTN-LNVEQVFFSIARDIKQRLADTDSRS 176
             + +  +   +G A+A + G   + E SA T+  ++  +F + +     + +    +S
Sbjct: 154 SHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPSPLPQKS 212

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  135 bits (342), Expect = 2e-40
 Identities = 44/165 (26%), Positives = 84/165 (50%), Gaps = 15/165 (9%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+ +++ +F   ++ T+  D    ++ + GK+  L ++DTAGQE +  +   
Sbjct: 27  GAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPL 85

Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
            Y      L+ + V + +SF N++  W+  ++++ + NV  +L+G + D+          
Sbjct: 86  SYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARL 144

Query: 121 -DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIAR 163
            D  ++ +   +GQ LA E G   + E SA T   ++ VF     
Sbjct: 145 NDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAII 189

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score =  108 bits (270), Expect = 2e-28
 Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 15/165 (9%)

Query: 7   IYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 66
           +    G VGK+CLL+ ++  +F   +I T+  D     + +DGK + L +WDTAG E + 
Sbjct: 159 VVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLEDYD 217

Query: 67  TITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM----- 120
            +    Y      L+ + +   +SF+++R  W   +  H   N   +LVG K D+     
Sbjct: 218 RLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKD 276

Query: 121 ------DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
                 ++    +   +G A+A E G +K+ E SA T   ++ VF
Sbjct: 277 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 88.6 bits (220), Expect = 3e-22
 Identities = 36/176 (20%), Positives = 59/176 (33%), Gaps = 20/176 (11%)

Query: 12  GGVGKSCLLLRFSDG----------SFTTSFITTIGIDFKIRTIE-LDGKRIKLQIWDTA 60
           G  GK+  L                S  T    T+  DF    I  + G + +  ++   
Sbjct: 23  GLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVP 82

Query: 61  GQERFRTITTAYYRGAMGILLVYDVTDESSFNN---IRNWIRNIEQHASDNVNKVLV--G 115
           GQ  +        RG  GI+ V D        N   +RN   N+ ++     +  +V   
Sbjct: 83  GQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQV 142

Query: 116 NKADMDESKRAVPTSK-GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA 170
           NK D+     A+P       +  E      E  A     V +    ++R +  R+A
Sbjct: 143 NKRDL---PDALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVA 195

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 70.3 bits (173), Expect = 2e-15
 Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 13/160 (8%)

Query: 15  GKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 74
           GK+  +   + G F    I T+G  F +R I      + +++WD  GQ RFR++   Y R
Sbjct: 34  GKTTFVNVIASGQFNEDMIPTVG--FNMRKITK--GNVTIKLWDIGGQPRFRSMWERYCR 89

Query: 75  GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV-GNKADMDESKRAVPTSKGQ 133
           G   I+ + D  D+      +N + N+          VLV GNK D+  +       +  
Sbjct: 90  GVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKM 149

Query: 134 ALADEYGIK-----FFETSAKTNLNVEQVFFSIARDIKQR 168
            L+    I+      +  S K   N++     + +  K R
Sbjct: 150 NLSA---IQDREICCYSISCKEKDNIDITLQWLIQHSKSR 186

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 69.9 bits (172), Expect = 2e-15
 Identities = 37/163 (22%), Positives = 66/163 (40%), Gaps = 20/163 (12%)

Query: 15  GKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 74
           GK+ +L R   G   T+ I TIG  F + T+    K +K Q+WD  G    R     YY 
Sbjct: 19  GKTTILYRLQVGEVVTT-IPTIG--FNVETVTY--KNLKFQVWDLGGLTSIRPYWRCYYS 73

Query: 75  GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV-GNKADMDESKRAVPTSKGQ 133
               ++ V D  D       ++ +  + +        ++V  NK DM+++  +       
Sbjct: 74  NTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTS------S 127

Query: 134 ALADEYG--------IKFFETSAKTNLNVEQVFFSIARDIKQR 168
            +A+  G         + F+TSA     +++    +   +K R
Sbjct: 128 EMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 170

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 69.6 bits (171), Expect = 3e-15
 Identities = 39/157 (24%), Positives = 61/157 (38%), Gaps = 8/157 (5%)

Query: 15  GKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 74
           GK+ +L R   G   T+   TIG  F + T+    K +KL +WD  GQ   R     YY 
Sbjct: 30  GKTTILYRLQIGEVVTT-KPTIG--FNVETLSY--KNLKLNVWDLGGQTSIRPYWRCYYA 84

Query: 75  GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV-GNKADMDESKRAVPTSKGQ 133
               ++ V D TD+   +     +  + Q        +LV  NK D   +  A   SK  
Sbjct: 85  DTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKEL 144

Query: 134 ALAD--EYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
            L +  +       +SA     + +    +   IK+ 
Sbjct: 145 NLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 181

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 69.6 bits (171), Expect = 4e-15
 Identities = 31/163 (19%), Positives = 67/163 (41%), Gaps = 20/163 (12%)

Query: 15  GKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 74
           GK+ +L R   G   T+ + T+G    + T++   K I  ++WD  GQ   R     Y+ 
Sbjct: 34  GKTSILYRLHLGDVVTT-VPTVG--VNLETLQY--KNISFEVWDLGGQTGVRPYWRCYFS 88

Query: 75  GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV-GNKADMDESKRAVPTSKGQ 133
               ++ V D TD       ++ +  +        + +L+  NK D+     A   ++  
Sbjct: 89  DTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDL---PDAASEAE-- 143

Query: 134 ALADEYG--------IKFFETSAKTNLNVEQVFFSIARDIKQR 168
            +A++ G            ++S+KT   + +    +   ++++
Sbjct: 144 -IAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQ 185

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 68.9 bits (169), Expect = 6e-15
 Identities = 40/163 (24%), Positives = 68/163 (41%), Gaps = 20/163 (12%)

Query: 15  GKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 74
           GK+ +L +   G   T+ I TIG  F + T+E   K I   +WD  GQ++ R +   Y++
Sbjct: 41  GKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNICFTVWDVGGQDKIRPLWRHYFQ 95

Query: 75  GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV-GNKADMDESKRAVPTSKGQ 133
              G++ V D  D        + ++ + Q        +LV  NK DM     A+P S+  
Sbjct: 96  NTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDM---PNAMPVSE-- 150

Query: 134 ALADEYG--------IKFFETSAKTNLNVEQVFFSIARDIKQR 168
            L D+ G             T A     +      ++ ++ +R
Sbjct: 151 -LTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 192

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 68.0 bits (167), Expect = 1e-14
 Identities = 36/162 (22%), Positives = 66/162 (40%), Gaps = 8/162 (4%)

Query: 15  GKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 74
           GK+ +L +F+     T    T+G  F I+T+E   +  KL IWD  GQ+  R+    Y+ 
Sbjct: 30  GKTTILKKFNGEDVDTI-SPTLG--FNIKTLEH--RGFKLNIWDVGGQKSLRSYWRNYFE 84

Query: 75  GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV-GNKADMDESKRAVPTSKGQ 133
              G++ V D  D     + +  ++++          +L+  NK D+  +       +  
Sbjct: 85  STDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEAL 144

Query: 134 ALAD--EYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTD 173
            L     +  +    SA T  ++      +  DI  R+   D
Sbjct: 145 ELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSRVFTAD 186

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 67.3 bits (165), Expect = 2e-14
 Identities = 34/166 (20%), Positives = 62/166 (37%), Gaps = 24/166 (14%)

Query: 15  GKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 74
           GK+ +L +FS      +   TIG    +  I +     +  +WD  GQE  R+    YY 
Sbjct: 28  GKTTILYQFSMNEVVHT-SPTIG--SNVEEIVI--NNTRFLMWDIGGQESLRSSWNTYYT 82

Query: 75  GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV---GNKADMDESKRAVPTSK 131
               +++V D TD    +  R  +  +  H  +++ K  +    NK D+   K  +  ++
Sbjct: 83  NTEFVIVVVDSTDRERISVTREELYKMLAH--EDLRKAGLLIFANKQDV---KECMTVAE 137

Query: 132 GQALADEYG--------IKFFETSAKTNLNVEQVFFSIARDIKQRL 169
              ++                   A T   + Q    +   +K RL
Sbjct: 138 ---ISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRL 180

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 66.4 bits (163), Expect = 4e-14
 Identities = 36/163 (22%), Positives = 67/163 (41%), Gaps = 20/163 (12%)

Query: 15  GKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 74
           GK+ +L +   G   T+ I TIG  F + T+E   K I   +WD  GQ++ R +   Y++
Sbjct: 12  GKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQ 66

Query: 75  GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV-GNKADMDESKRAVPTSKGQ 133
              G++ V D  D    N  R  +  +          +LV  NK D+     A+  ++  
Sbjct: 67  NTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL---PNAMNAAE-- 121

Query: 134 ALADEYG--------IKFFETSAKTNLNVEQVFFSIARDIKQR 168
            + D+ G             T A +   + +    ++  ++ +
Sbjct: 122 -ITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 163

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 66.9 bits (164), Expect = 4e-14
 Identities = 28/160 (17%), Positives = 63/160 (39%), Gaps = 10/160 (6%)

Query: 15  GKSCLLLRFSDGSFTTSFIT-TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 73
           GK+ ++ +    +  +  I  TIG  F I   +     +   ++D +GQ R+R +   YY
Sbjct: 33  GKTTIINKLKPSNAQSQNILPTIG--FSIEKFKS--SSLSFTVFDMSGQGRYRNLWEHYY 88

Query: 74  RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV---GNKADMDESKRAVPTS 130
           +    I+ V D +D       +  +  +  H      ++ +    NK D+ ++  +V  S
Sbjct: 89  KEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVS 148

Query: 131 KGQALAD--EYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
           +   L +  +       + A     +++    +   I+  
Sbjct: 149 QLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQTV 188

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 65.7 bits (161), Expect = 8e-14
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 20/163 (12%)

Query: 15  GKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 74
           GK+ LL + +    +     T G  F I++++   +  KL +WD  GQ + R    +Y+ 
Sbjct: 28  GKTTLLKQLASEDISHI-TPTQG--FNIKSVQS--QGFKLNVWDIGGQRKIRPYWRSYFE 82

Query: 75  GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV-GNKADMDESKRAVPTSKGQ 133
               ++ V D  D   F      +  + +    +   VL+  NK D+  +  A       
Sbjct: 83  NTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA------S 136

Query: 134 ALADEYG--------IKFFETSAKTNLNVEQVFFSIARDIKQR 168
            +A+            +    SA T   V+     + +++  +
Sbjct: 137 EIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 179

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 62.7 bits (152), Expect = 1e-12
 Identities = 31/153 (20%), Positives = 51/153 (33%), Gaps = 18/153 (11%)

Query: 13  GVGKSCLL-LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT-- 69
             GKS +  + F   S   +             I      +  QIWD  GQ  F   T  
Sbjct: 30  RSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSF-VNFQIWDFPGQMDFFDPTFD 88

Query: 70  -TAYYRGAMGILLVYDVTDES--SFNNIRNWIRNIEQHASDNVNKVLVGNKADM------ 120
               +RG   ++ V D  D+   +   +   +    +   D   +V + +K D       
Sbjct: 89  YEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFI-HKVDGLSDDHK 147

Query: 121 DESKRAVPTSKGQALADE----YGIKFFETSAK 149
            E++R +       LAD       + F+ TS  
Sbjct: 148 IETQRDIHQRANDDLADAGLEKLHLSFYLTSIY 180

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 61.1 bits (149), Expect = 4e-12
 Identities = 31/155 (20%), Positives = 57/155 (36%), Gaps = 24/155 (15%)

Query: 15  GKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 74
           GK+ +L +FS      +   TIG    +  I +     +  +WD  GQE  R+    YY 
Sbjct: 33  GKTTILYQFSMNEVVHT-SPTIG--SNVEEIVI--NNTRFLMWDIGGQESLRSSWNTYYT 87

Query: 75  GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV---GNKADMDESKRAVPTSK 131
               +++V D TD    +  R  +  +  H  +++ K  +    NK D+   K  +  ++
Sbjct: 88  NTEFVIVVVDSTDRERISVTREELYKMLAH--EDLRKAGLLIFANKQDV---KECMTVAE 142

Query: 132 GQALADEYG--------IKFFETSAKTNLNVEQVF 158
              ++                   A T   + Q  
Sbjct: 143 ---ISQFLKLTSIKDHQWHIQACCALTGEGLCQGL 174

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 59.2 bits (144), Expect = 2e-11
 Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 6/107 (5%)

Query: 15  GKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 74
           GK+ LL    D       + T+        + +    +    +D  G  + R +   Y  
Sbjct: 37  GKTTLLHMLKDDRLGQH-VPTLH--PTSEELTI--AGMTFTTFDLGGHIQARRVWKNYLP 91

Query: 75  GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV-GNKADM 120
              GI+ + D  D       +  + ++    +     +L+ GNK D 
Sbjct: 92  AINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDR 138

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 60.7 bits (147), Expect = 3e-11
 Identities = 35/160 (21%), Positives = 63/160 (39%), Gaps = 8/160 (5%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
              GK+ +L +   G   T+ I TIG  F + T+E   K I   +WD  GQ++ R +   
Sbjct: 174 DAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDKIRPLWRH 228

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV-GNKADMDESKRAVPTS 130
           Y++   G++ V D  D    N  R  +  +          +LV  NK D+  +  A   +
Sbjct: 229 YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEIT 288

Query: 131 KGQALAD--EYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
               L            T A +   + +    ++  ++ +
Sbjct: 289 DKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 328

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 60.4 bits (146), Expect = 3e-11
 Identities = 31/171 (18%), Positives = 67/171 (39%), Gaps = 22/171 (12%)

Query: 13  GVGKSCLL-LRFSDGSF--TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF---- 65
           G GKS +  + FS+ S   T     TI ++     +   G  + L +WD  GQ+ F    
Sbjct: 13  GSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLGN-MTLNLWDCGGQDVFMENY 69

Query: 66  -RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLV-GNKADM-- 120
                   ++    ++ V+DV       +I  + + ++Q    + + K+ V  +K D+  
Sbjct: 70  FTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129

Query: 121 DESKRAVPTSKGQALADEYG------IKFFETSAKTNLNVEQVFFSIARDI 165
            + +  +     + L++         +  F TS     ++ + +  I   +
Sbjct: 130 LDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDE-SLYKAWSQIVCSL 179

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 58.7 bits (143), Expect = 3e-11
 Identities = 23/107 (21%), Positives = 38/107 (35%), Gaps = 6/107 (5%)

Query: 15  GKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 74
           GK+ LL    +    T    T         + +    IK   +D  G  + R +   Y+ 
Sbjct: 35  GKTTLLHMLKNDRLATL-QPTWH--PTSEELAI--GNIKFTTFDLGGHIQARRLWKDYFP 89

Query: 75  GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV-GNKADM 120
              GI+ + D  D   F+  R  +  +   A       ++ GNK D 
Sbjct: 90  EVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDA 136

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 54.0 bits (130), Expect = 2e-09
 Identities = 22/116 (18%), Positives = 47/116 (40%), Gaps = 9/116 (7%)

Query: 15  GKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFR-TITTAY 72
           GK+ L +R   G +  +  T+I         ++ + +   L + D  G E  R  +   +
Sbjct: 19  GKTLLFVRLLTGQYRDT-QTSIT--DSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRF 75

Query: 73  YRGAMGILLVYDVTD-ESSFNNIRNWIRNI--EQHASDNVNKVLV-GNKADMDESK 124
              A  ++ V D    +    ++  ++  +  +  A  N   +L+  NK D+  +K
Sbjct: 76  KSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 131

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 51.3 bits (123), Expect = 2e-08
 Identities = 18/119 (15%), Positives = 44/119 (36%), Gaps = 15/119 (12%)

Query: 15  GKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 74
           GK+ LL   +  S   + + +            D     + + D  G  + R   + Y +
Sbjct: 60  GKTSLLTLLTTDSVRPT-VVSQE-----PLSAADYDGSGVTLVDFPGHVKLRYKLSDYLK 113

Query: 75  GAM----GILLVYD-VTDESSFNNIRNWIRNI---EQHASDNVNKVLV-GNKADMDESK 124
                  G++ + D   D         ++ +I    + + +N   +L+  NK+++  ++
Sbjct: 114 TRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 172

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 50.1 bits (120), Expect = 6e-08
 Identities = 18/119 (15%), Positives = 44/119 (36%), Gaps = 15/119 (12%)

Query: 15  GKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY- 73
           GK+ LL   +  S   + + +            D     + + D  G  + R   + Y  
Sbjct: 24  GKTSLLTLLTTDSVRPT-VVSQE-----PLSAADYDGSGVTLVDFPGHVKLRYKLSDYLK 77

Query: 74  ---RGAMGILLVYD-VTDESSFNNIRNWIRNI---EQHASDNVNKVLV-GNKADMDESK 124
              +   G++ + D   D         ++ +I    + + +N   +L+  NK+++  ++
Sbjct: 78  TRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 136

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 42.5 bits (101), Expect = 4e-05
 Identities = 27/152 (17%), Positives = 48/152 (31%), Gaps = 24/152 (15%)

Query: 44  TIELDGKRIKLQIWDTAGQ-------ERF---RTITTAYYRGAMGILLVYDVTDESSFNN 93
               D      ++ DTAG        E     R+        A  IL + D+  E   + 
Sbjct: 275 CFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM--AEADLILYLLDLGTERLDDE 330

Query: 94  IRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN 153
           +         H       + V NK D      A   +  +A+AD  G +    SA     
Sbjct: 331 LTEIRELKAAHP--AAKFLTVANKLDRA----ANADALIRAIADGTGTEVIGISALNGDG 384

Query: 154 VEQVFFSIARDIKQRLADTDSRSEPSTIKINQ 185
           ++     + + +   + + D   E S +  + 
Sbjct: 385 IDT----LKQHMGDLVKNLDKLHEASVLVTSL 412

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172

 Score = 40.6 bits (96), Expect = 7e-05
 Identities = 27/123 (21%), Positives = 42/123 (34%), Gaps = 23/123 (18%)

Query: 44  TIELDGKRIKLQIWDTAGQ-------ERF---RTITTAYYRGAMGILLVYDVTDESSFNN 93
            I +DG  + L I DTAG        ER    R         A  +L + D T   +  +
Sbjct: 46  HIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEI--EQADRVLFMVDGTTTDA-VD 100

Query: 94  IRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN 153
                          +   +V NKAD+        T +   +++  G      SA+T   
Sbjct: 101 PAEIWPEFIARLPAKLPITVVRNKADI--------TGETLGMSEVNGHALIRLSARTGEG 152

Query: 154 VEQ 156
           V+ 
Sbjct: 153 VDV 155

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 3e-04
 Identities = 26/199 (13%), Positives = 59/199 (29%), Gaps = 54/199 (27%)

Query: 12  GGVGKSCL---LLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---- 64
            G GK+ +   +                  DFKI              W           
Sbjct: 159 LGSGKTWVALDVCL--SYKVQCKM------DFKI-------------FWLNLKNCNSPET 197

Query: 65  -FRTITTAYYR--GAMGILLVYDVTDESSFNNIRNWIRNI---EQHAS-----DNVN--K 111
               +    Y+          +    +   ++I+  +R +   + + +      NV   K
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257

Query: 112 VLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARD-IKQRLA 170
                 A  + S + + T++ + + D     F   +  T+++++    ++  D +K  L 
Sbjct: 258 AW---NA-FNLSCKILLTTRFKQVTD-----FLSAATTTHISLDHHSMTLTPDEVKSLLL 308

Query: 171 ---DTDSRSEPSTIKINQP 186
              D   +  P  +    P
Sbjct: 309 KYLDCRPQDLPREVLTTNP 327

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	205
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	100.0
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	100.0
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	100.0
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	100.0
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	100.0
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	100.0
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	100.0
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	100.0
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	100.0
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	100.0
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.98
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.97
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.97
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.97
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.97
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.97
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.97
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.97
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.97
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.97
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.97
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.97
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.97
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.97
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.97
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.97
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.97
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.94
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.96
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.96
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.96
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.96
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.96
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.95
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.95
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.95
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.95
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.95
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.95
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.95
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.95
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.94
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.94
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.94
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.94
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.93
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.93
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.93
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.93
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.93
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.93
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.92
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.91
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.91
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.91
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.91
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.9
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.9
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.9
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.9
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.9
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.89
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.89
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.89
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.89
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.89
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.88
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.88
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.88
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.88
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.88
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.87
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.87
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.87
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.87
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.87
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.87
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.86
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.86
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.86
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.86
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.86
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.86
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.86
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.86
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.85
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.85
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.85
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.84
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.84
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.84
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.84
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.84
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.83
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.83
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.83
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.82
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.81
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.81
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.8
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.8
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.8
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.8
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.79
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.78
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.78
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.78
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.77
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.77
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.76
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.76
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.75
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.75
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.74
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.74
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.73
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.73
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.73
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.72
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.68
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.67
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.66
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.66
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.65
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.61
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.61
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.59
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.56
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.54
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.53
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.5
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.49
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.47
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.47
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.46
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.39
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.38
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.34
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.33
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.29
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.28
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.09
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.01
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.92
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.92
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.84
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.83
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.83
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.71
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.65
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.41
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.38
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.34
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.26
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.21
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.13
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.06
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.05
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.03
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.01
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.0
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.93
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.57
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.42
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.27
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.26
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.21
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.2
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.14
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.14
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.12
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.12
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.11
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.09
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.04
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.03
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.02
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.02
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.01
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.01
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.97
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	96.96
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.95
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.95
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.94
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.94
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.93
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.93
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.93
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.92
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.92
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.92
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.89
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.88
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	96.87
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.86
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.86
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.85
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.84
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.84
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.83
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.82
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.79
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.79
3co5_A	143	Putative two-component system transcriptional RES	96.78
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.78
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.77
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.77
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.77
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	96.77
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	96.77
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.77
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.76
1via_A	175	Shikimate kinase; structural genomics, transferase	96.75
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.75
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.75
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.75
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.73
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.73
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.73
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.72
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.72
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.72
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.71
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.71
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.7
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.7
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.69
1g6h_A	257	High-affinity branched-chain amino acid transport	96.68
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.67
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.67
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.66
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.66
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.66
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.66
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.66
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.65
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.65
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.65
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.65
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.65
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.64
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.63
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.62
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.62
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.61
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.61
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.61
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.61
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.6
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.6
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.6
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.6
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.6
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.59
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.59
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.58
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.58
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.58
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.57
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.57
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.56
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.56
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.55
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.54
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.54
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.53
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.53
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.53
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.52
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.51
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.5
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.49
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.48
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.47
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.46
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.46
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.46
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.45
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.45
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.44
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.43
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.42
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.41
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.41
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.39
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.39
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.39
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.37
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.35
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.34
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.34
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.32
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.31
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.31
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.3
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.3
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.29
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.29
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.28
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.28
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.27
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.27
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.27
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.27
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.26
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.26
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.26
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.26
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.25
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.24
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.23
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.23
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.22
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.22
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.21
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.2
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.19
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.19
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.19
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	96.16
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.16
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.16
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.16
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.15
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.14
3uc9_A	233	Increased recombination centers protein 6; rossman	96.12
3bos_A	242	Putative DNA replication factor; P-loop containing	96.11
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	96.1
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.1
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.09
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.08
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.07
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.05
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.05
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.03
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.02
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.02
2cvh_A	220	DNA repair and recombination protein RADB; filamen	95.99
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	95.99
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	95.96
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	95.94
2og2_A	359	Putative signal recognition particle receptor; nuc	95.93
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	95.9
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	95.89
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	95.88
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	95.87
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	95.87
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	95.85
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	95.84
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.84
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	95.81
3kta_A	182	Chromosome segregation protein SMC; structural mai	95.8
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	95.8
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.8
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.8
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.75
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.72
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.71
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.69
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.68
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.67
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.66
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.64
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	95.63
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.57
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.5
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	95.49
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.48
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.46
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.45
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.44
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.44
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.44
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.43
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	95.4
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.39
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.38
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.35
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	95.35
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.35
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.33
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.32
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.31
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	95.31
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.3
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.28
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.28
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.26
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.26
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.22
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	95.22
2qgz_A	308	Helicase loader, putative primosome component; str	95.22
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.22
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.21
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.2
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	95.19
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.17
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.16
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.16
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	95.15
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	95.14
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.13
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.08
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.07
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.06
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.05
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.05
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	94.99
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	94.99
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	94.98
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	94.98
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	94.97
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	94.96
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	94.96
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	94.96
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	94.95
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	94.95
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	94.93
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	94.93
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	94.93
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	94.9
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	94.89
3cwq_A	209	Para family chromosome partitioning protein; alpha	94.85
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	94.84
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	94.83
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	94.81
2r44_A	331	Uncharacterized protein; putative ATPase, structur	94.81
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	94.8

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=9.6e-46  Score=278.45  Aligned_cols=197  Identities=35%  Similarity=0.622  Sum_probs=146.1

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   80 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   80 (205)
                      |..+||+|+|++|||||||+++|+.+.+...+.||++.++..+.+.+++..+.+.||||+|+++|..++..+++++++++
T Consensus        11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i   90 (216)
T 4dkx_A           11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV   90 (216)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred             CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686           81 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  160 (205)
Q Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  160 (205)
                      +|||+++++||+.+..|+..+.....+++|++|||||+|+.+ .+.+..++++.++++++++|+|+||++|.||+++|+.
T Consensus        91 lv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~-~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~  169 (216)
T 4dkx_A           91 VVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD-KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRR  169 (216)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHh-cCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHH
Confidence            999999999999999999999988878899999999999965 5678999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCC-CCCccccccCCCCCCCCCCCCCCCCCcC
Q 028686          161 IARDIKQRLADTDSR-SEPSTIKINQPDQAGGVGQAAQKSACCG  203 (205)
Q Consensus       161 i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~c~~  203 (205)
                      |++.+.......... .....+++.++     ..+..++++|||
T Consensus       170 i~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~C~C  208 (216)
T 4dkx_A          170 VAAALPGMESTQDRSREDMIDIKLEKP-----QEQPVSEGGCSC  208 (216)
T ss_dssp             HHHHC---------------------------------------
T ss_pred             HHHHHHhhhcccccccccccccccCCC-----CCCCCCCCCCce
Confidence            999887654433222 11222222222     223455678888

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=2.5e-38  Score=236.17  Aligned_cols=169  Identities=53%  Similarity=0.933  Sum_probs=155.3

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+|
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv   87 (206)
T 2bcg_Y            8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIV   87 (206)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEE
Confidence            48999999999999999999999999888889999888888889999999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||++++++++.+..|+..+......+.|+++|+||+|+.+ ...+..+++..++...+++++++||++|.|++++|++|.
T Consensus        88 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~  166 (206)
T 2bcg_Y           88 YDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD-KRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMA  166 (206)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             EECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999999999999887767899999999999965 355778889999999999999999999999999999999


Q ss_pred             HHHHHHhccc
Q 028686          163 RDIKQRLADT  172 (205)
Q Consensus       163 ~~~~~~~~~~  172 (205)
                      +.+.+.....
T Consensus       167 ~~i~~~~~~~  176 (206)
T 2bcg_Y          167 RQIKESMSQQ  176 (206)
T ss_dssp             HHHHHHCCHH
T ss_pred             HHHHHHHhhc
Confidence            9998765533

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=2.5e-37  Score=230.66  Aligned_cols=169  Identities=38%  Similarity=0.673  Sum_probs=151.7

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   86 (207)
T 1vg8_A            7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVL   86 (207)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEE
Confidence            35899999999999999999999999888888999989988888888888999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-HhCCcEEEEcCCCCCCHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAVPTSKGQALAD-EYGIKFFETSAKTNLNVEQ  156 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~  156 (205)
                      |||+++++++..+..|+..+.....    .+.|+++|+||+|+.  ...+..+++..++. ..+++++++||++|.|+++
T Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~  164 (207)
T 1vg8_A           87 VFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE--NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQ  164 (207)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS--CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc--ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHH
Confidence            9999999999999999998876653    468999999999996  34567788888887 6678999999999999999


Q ss_pred             HHHHHHHHHHHHhccc
Q 028686          157 VFFSIARDIKQRLADT  172 (205)
Q Consensus       157 ~~~~i~~~~~~~~~~~  172 (205)
                      +|++|.+.+.+.....
T Consensus       165 l~~~l~~~~~~~~~~~  180 (207)
T 1vg8_A          165 AFQTIARNALKQETEV  180 (207)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccc
Confidence            9999999998776543

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=1.8e-36  Score=225.66  Aligned_cols=171  Identities=34%  Similarity=0.605  Sum_probs=151.6

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   80 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   80 (205)
                      |..++|+|+|++|||||||+++|.+..+...+.+|.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|+++
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   90 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   90 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence            3468999999999999999999999998888888887554 456778888899999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHH
Q 028686           81 LVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF  159 (205)
Q Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  159 (205)
                      +|||++++++|..+..|+..+..... .++|+++|+||+|+.+ ...+..+++..++...+++++++||++|.|++++|+
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  169 (206)
T 2bov_A           91 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED-KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFF  169 (206)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccc-cccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999987653 5799999999999965 355778899999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccC
Q 028686          160 SIARDIKQRLADTD  173 (205)
Q Consensus       160 ~i~~~~~~~~~~~~  173 (205)
                      +|.+.+.++.....
T Consensus       170 ~l~~~i~~~~~~~~  183 (206)
T 2bov_A          170 DLMREIRARKMEDS  183 (206)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcccccc
Confidence            99999987655443

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-36  Score=229.81  Aligned_cols=170  Identities=45%  Similarity=0.770  Sum_probs=144.5

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++++..++..+++.+|++|+|
T Consensus        13 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV   92 (223)
T 3cpj_B           13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIV   92 (223)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEE
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEE
Confidence            48999999999999999999999998888888888888888888999889999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||++++++|+.+..|+..+......++|++||+||+|+.+ ...+..+++..++...+++++++||+++.|++++|++|.
T Consensus        93 ~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  171 (223)
T 3cpj_B           93 YDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAH-LRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELI  171 (223)
T ss_dssp             EC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGG-GCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHH
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999999999999887666799999999999965 355778889999999999999999999999999999999


Q ss_pred             HHHHHHhcccC
Q 028686          163 RDIKQRLADTD  173 (205)
Q Consensus       163 ~~~~~~~~~~~  173 (205)
                      +.+.++.....
T Consensus       172 ~~i~~~~~~~~  182 (223)
T 3cpj_B          172 NTIYQKVSKHQ  182 (223)
T ss_dssp             HHHTTCC----
T ss_pred             HHHHHHhhhcc
Confidence            99977655443

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=3.4e-36  Score=220.39  Aligned_cols=170  Identities=65%  Similarity=1.107  Sum_probs=127.1

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++++|++++|
T Consensus         8 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   87 (183)
T 2fu5_C            8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLV   87 (183)
T ss_dssp             EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEE
Confidence            48999999999999999999999988888889999888888888999999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||++++++|+.+..|+..+.....+++|+++|+||+|+.+ ...+..+++..++...+++++++||+++.|++++|++|.
T Consensus        88 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  166 (183)
T 2fu5_C           88 YDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA  166 (183)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS-CCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHH
T ss_pred             EECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCc-cCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999999999999887667899999999999965 456778899999999999999999999999999999999


Q ss_pred             HHHHHHhcccC
Q 028686          163 RDIKQRLADTD  173 (205)
Q Consensus       163 ~~~~~~~~~~~  173 (205)
                      +.+.++.++..
T Consensus       167 ~~i~~~~~~~~  177 (183)
T 2fu5_C          167 RDIKAKMDKNW  177 (183)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHhhccc
Confidence            99988766543

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.2e-35  Score=219.87  Aligned_cols=168  Identities=44%  Similarity=0.785  Sum_probs=154.6

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+|+|++|||||||+++|+++.+...+.+|.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+|
T Consensus        26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v  105 (201)
T 2ew1_A           26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILT  105 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEE
Confidence            48999999999999999999999998888889999999988999999999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||++++++|+.+..|+..+......++|+++|+||+|+.+ ...+..++++.++...+++++++||++|.|++++|+++.
T Consensus       106 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  184 (201)
T 2ew1_A          106 YDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE-RREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLA  184 (201)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999999999999887767799999999999964 456778889999999999999999999999999999999


Q ss_pred             HHHHHHhcc
Q 028686          163 RDIKQRLAD  171 (205)
Q Consensus       163 ~~~~~~~~~  171 (205)
                      +.+.++.+.
T Consensus       185 ~~i~~~~~~  193 (201)
T 2ew1_A          185 CRLISEARQ  193 (201)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHHhh
Confidence            999876543

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=5.6e-35  Score=216.03  Aligned_cols=169  Identities=59%  Similarity=0.999  Sum_probs=155.6

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus        16 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   95 (196)
T 3tkl_A           16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV   95 (196)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEE
Confidence            48999999999999999999999999888899999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||++++++++.+..|+..+......++|+++|+||+|+.+ ...+..+++..++..++++++++||+++.|++++|++|.
T Consensus        96 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  174 (196)
T 3tkl_A           96 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT-KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA  174 (196)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHH
T ss_pred             EECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc-ccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999999999999888777899999999999965 456778889999999999999999999999999999999


Q ss_pred             HHHHHHhccc
Q 028686          163 RDIKQRLADT  172 (205)
Q Consensus       163 ~~~~~~~~~~  172 (205)
                      +.+.++....
T Consensus       175 ~~i~~~~~~~  184 (196)
T 3tkl_A          175 AEIKKRMGPG  184 (196)
T ss_dssp             HHHHHHC---
T ss_pred             HHHHHHhccc
Confidence            9998876543

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=5.9e-35  Score=214.22  Aligned_cols=170  Identities=42%  Similarity=0.729  Sum_probs=155.9

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+|
T Consensus        10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   89 (186)
T 2bme_A           10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLV   89 (186)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEE
Confidence            58999999999999999999999998888889999888888889999889999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||+++++++..+..|+..+......++|+++|+||+|+.+ ...+..+++..++...+++++++||+++.|++++|+++.
T Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  168 (186)
T 2bme_A           90 YDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA-DREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCA  168 (186)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999999999887667899999999999964 455778889999999999999999999999999999999


Q ss_pred             HHHHHHhcccC
Q 028686          163 RDIKQRLADTD  173 (205)
Q Consensus       163 ~~~~~~~~~~~  173 (205)
                      +.+.+..+...
T Consensus       169 ~~~~~~~~~~~  179 (186)
T 2bme_A          169 RKILNKIESGE  179 (186)
T ss_dssp             HHHHHHHHSCC
T ss_pred             HHHHHHhhhcC
Confidence            99988765543

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=2.3e-35  Score=219.71  Aligned_cols=168  Identities=45%  Similarity=0.800  Sum_probs=145.4

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+|+|++|||||||+++|.+..+...+.+|.+.++....+.+++..+.+.+||+||++++..++..+++.+|++|+
T Consensus        28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil  107 (201)
T 2hup_A           28 FLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAIL  107 (201)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEE
Confidence            35899999999999999999999999888888898888888888899988999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC-cEEEEcCCCCCCHHHHHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVEQVFFS  160 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~  160 (205)
                      |||++++++|+.+..|+..+......++|+++|+||+|+.+ ...+..+++.+++...++ +++++||+++.|++++|++
T Consensus       108 v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~  186 (201)
T 2hup_A          108 AYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE-LREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLR  186 (201)
T ss_dssp             EEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccc-ccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999887767899999999999965 355778899999999998 9999999999999999999


Q ss_pred             HHHHHHHHhc
Q 028686          161 IARDIKQRLA  170 (205)
Q Consensus       161 i~~~~~~~~~  170 (205)
                      |.+.+.+...
T Consensus       187 l~~~i~~~~~  196 (201)
T 2hup_A          187 VATELIMRHG  196 (201)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHhcc
Confidence            9999976543

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=4.3e-35  Score=211.46  Aligned_cols=165  Identities=40%  Similarity=0.687  Sum_probs=151.2

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   80 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   80 (205)
                      |..+||+++|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++++|+++
T Consensus         1 v~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   80 (170)
T 1ek0_A            1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAAL   80 (170)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEE
Confidence            56799999999999999999999999988888899998888888889999999999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC--CccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHH
Q 028686           81 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK--RAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF  158 (205)
Q Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  158 (205)
                      +|||++++++++.+..|+..+......+.|+++|+||+|+.+..  ..+..++...++...+++++++||+++.|++++|
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  160 (170)
T 1ek0_A           81 VVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF  160 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHH
T ss_pred             EEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999988776789999999999996532  5677888899999999999999999999999999


Q ss_pred             HHHHHHH
Q 028686          159 FSIARDI  165 (205)
Q Consensus       159 ~~i~~~~  165 (205)
                      ++|.+.+
T Consensus       161 ~~l~~~i  167 (170)
T 1ek0_A          161 LGIGEKI  167 (170)
T ss_dssp             HHHHTTS
T ss_pred             HHHHHHH
Confidence            9998754

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=4.7e-35  Score=216.06  Aligned_cols=169  Identities=48%  Similarity=0.851  Sum_probs=150.3

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   99 (191)
T 2a5j_A           20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   99 (191)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEE
Confidence            35899999999999999999999999888888888888888888899999999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  161 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i  161 (205)
                      |||++++++++.+..|+..+......+.|+++|+||+|+.+ ...+..++++.++...+++++++||+++.|++++|++|
T Consensus       100 v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  178 (191)
T 2a5j_A          100 VYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES-RRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINT  178 (191)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCC-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999887667899999999999965 45577888999999999999999999999999999999


Q ss_pred             HHHHHHHhcc
Q 028686          162 ARDIKQRLAD  171 (205)
Q Consensus       162 ~~~~~~~~~~  171 (205)
                      .+.+.++...
T Consensus       179 ~~~i~~~~~~  188 (191)
T 2a5j_A          179 AKEIYRKIQQ  188 (191)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999876543

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=1.1e-34  Score=215.90  Aligned_cols=170  Identities=49%  Similarity=0.869  Sum_probs=155.9

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++++..++..+++.+|++|+|
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   87 (203)
T 1zbd_A            8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILM   87 (203)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEE
Confidence            48999999999999999999999998888889999888888888899899999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||++++++|+.+..|+..+......+.|+++|+||+|+.+ ...+..+++..++..++++++++||++|.|++++|++|.
T Consensus        88 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  166 (203)
T 1zbd_A           88 YDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED-ERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV  166 (203)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTT-SCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHH
T ss_pred             EECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCc-ccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999999999887666799999999999965 456778889999999999999999999999999999999


Q ss_pred             HHHHHHhcccC
Q 028686          163 RDIKQRLADTD  173 (205)
Q Consensus       163 ~~~~~~~~~~~  173 (205)
                      +.+.++.++..
T Consensus       167 ~~i~~~~~~~~  177 (203)
T 1zbd_A          167 DVICEKMSESL  177 (203)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHhhc
Confidence            99988766543

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=5.2e-35  Score=213.49  Aligned_cols=167  Identities=37%  Similarity=0.664  Sum_probs=151.3

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+++|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+
T Consensus        11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   90 (181)
T 2efe_B           11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   90 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEE
Confidence            45899999999999999999999999888888888888888888889889999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  161 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i  161 (205)
                      |||++++++++.+..|+..+.....+++|+++|+||+|+.+ ...+..++++.++...+++++++||++|.|++++|++|
T Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  169 (181)
T 2efe_B           91 VFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLD-ARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEI  169 (181)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc-cccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999999887767899999999999965 45677889999999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 028686          162 ARDIKQRL  169 (205)
Q Consensus       162 ~~~~~~~~  169 (205)
                      .+.+.+..
T Consensus       170 ~~~~~~~~  177 (181)
T 2efe_B          170 ARRLPRVQ  177 (181)
T ss_dssp             HHTCC---
T ss_pred             HHHHHhcC
Confidence            98775543

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=1.1e-34  Score=213.76  Aligned_cols=166  Identities=49%  Similarity=0.899  Sum_probs=152.8

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+|
T Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v  101 (189)
T 2gf9_A           22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLM  101 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEE
Confidence            58999999999999999999999998888888888888888888888899999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||++++++++.+..|+..+......+.|+++|+||+|+.+ ...+..++++++++.++++++++||++|.|++++|++|.
T Consensus       102 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~  180 (189)
T 2gf9_A          102 YDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLED-ERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV  180 (189)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc-ccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999999999887666799999999999965 455677889999999999999999999999999999999


Q ss_pred             HHHHHHh
Q 028686          163 RDIKQRL  169 (205)
Q Consensus       163 ~~~~~~~  169 (205)
                      +.+.++.
T Consensus       181 ~~i~~~~  187 (189)
T 2gf9_A          181 DVICEKM  187 (189)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9987764

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=8.2e-35  Score=210.01  Aligned_cols=163  Identities=42%  Similarity=0.743  Sum_probs=149.8

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+++|++|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++++
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   84 (170)
T 1r2q_A            5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEE
Confidence            46899999999999999999999999888888899888888888889889999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  161 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i  161 (205)
                      |||++++++++.+..|+..+.....+++|+++|+||+|+.+ ...+..+++..++...+++++++||++|.|++++|++|
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i  163 (170)
T 1r2q_A           85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN-KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI  163 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999887667899999999999965 35567788899999999999999999999999999999


Q ss_pred             HHHH
Q 028686          162 ARDI  165 (205)
Q Consensus       162 ~~~~  165 (205)
                      .+.+
T Consensus       164 ~~~~  167 (170)
T 1r2q_A          164 AKKL  167 (170)
T ss_dssp             HHTS
T ss_pred             HHHH
Confidence            8765

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=1.5e-34  Score=212.35  Aligned_cols=168  Identities=34%  Similarity=0.568  Sum_probs=147.4

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+++|++|||||||+++|.+..+...+.++.+ +.....+.+++..+.+.+||+||++.+..++..+++.+|++++
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   81 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   81 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            468999999999999999999999998777777775 4555677888999999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  160 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  160 (205)
                      |||++++++++.+..|+..+..... .+.|+++|+||+|+.+  ..+..+++..++..++++++++||++|.|++++|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  159 (189)
T 4dsu_A           82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS--RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT  159 (189)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS--CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc--cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            9999999999999999999987543 5799999999999963  556788899999999999999999999999999999


Q ss_pred             HHHHHHHHhccc
Q 028686          161 IARDIKQRLADT  172 (205)
Q Consensus       161 i~~~~~~~~~~~  172 (205)
                      |.+.+.++....
T Consensus       160 l~~~~~~~~~~~  171 (189)
T 4dsu_A          160 LVREIRKHKEKM  171 (189)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhc
Confidence            999998776553

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=4.8e-35  Score=211.48  Aligned_cols=164  Identities=36%  Similarity=0.745  Sum_probs=144.1

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+++|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++++..++..+++.+|++++
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   84 (170)
T 1z08_A            5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   84 (170)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEE
Confidence            35899999999999999999999999888888999988888888888889999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  161 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i  161 (205)
                      |||++++++++.+..|+..+......++|+++|+||+|+.+ ...+..+++..+++..+++++++||+++.|++++|++|
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  163 (170)
T 1z08_A           85 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK-ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL  163 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc-ccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            99999999999999999998876656799999999999965 45677889999999999999999999999999999999


Q ss_pred             HHHHH
Q 028686          162 ARDIK  166 (205)
Q Consensus       162 ~~~~~  166 (205)
                      .+.+.
T Consensus       164 ~~~~~  168 (170)
T 1z08_A          164 CKRMI  168 (170)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98875

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=9.2e-35  Score=211.56  Aligned_cols=164  Identities=45%  Similarity=0.801  Sum_probs=151.0

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus        15 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (179)
T 1z0f_A           15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   94 (179)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEE
Confidence            58999999999999999999999998888888888888888888999999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||++++++++.+..|+..+......+.|+++|+||+|+.+ ...+..+++++++...+++++++||+++.|++++|+++.
T Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  173 (179)
T 1z0f_A           95 YDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA-QRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAA  173 (179)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999999999999887767899999999999964 455778899999999999999999999999999999999


Q ss_pred             HHHHH
Q 028686          163 RDIKQ  167 (205)
Q Consensus       163 ~~~~~  167 (205)
                      +.+.+
T Consensus       174 ~~i~~  178 (179)
T 1z0f_A          174 KKIYQ  178 (179)
T ss_dssp             HHHC-
T ss_pred             HHHhh
Confidence            88754

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.4e-34  Score=210.90  Aligned_cols=168  Identities=51%  Similarity=0.892  Sum_probs=152.1

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus         9 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   88 (181)
T 3tw8_B            9 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVV   88 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEE
Confidence            48999999999999999999999998888889999999989999999999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||+++++++..+..|+..+.... ++.|+++|+||+|+.+ ...+..++...++...+++++++||++|.|++++|++|.
T Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  166 (181)
T 3tw8_B           89 YDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPE-RKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCIT  166 (181)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCch-hcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            99999999999999999998765 5799999999999865 455778889999999999999999999999999999999


Q ss_pred             HHHHHHhccc
Q 028686          163 RDIKQRLADT  172 (205)
Q Consensus       163 ~~~~~~~~~~  172 (205)
                      +.+.+..++.
T Consensus       167 ~~~~~~~~~~  176 (181)
T 3tw8_B          167 ELVLRAKKDN  176 (181)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHhhhh
Confidence            9998876653

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=6.8e-35  Score=210.56  Aligned_cols=166  Identities=57%  Similarity=1.023  Sum_probs=145.9

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            35899999999999999999999999888888888888888888888888999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  161 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i  161 (205)
                      |||++++++++.+..|+..+......+.|+++|+||+|+.  ...+..+++..+++..+++++++||++|.|++++|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l  159 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL  159 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT--TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC--cCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            9999999999999999999988776789999999999993  35567888899999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 028686          162 ARDIKQRL  169 (205)
Q Consensus       162 ~~~~~~~~  169 (205)
                      .+.+.++.
T Consensus       160 ~~~~~~~~  167 (170)
T 1g16_A          160 AKLIQEKI  167 (170)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHHh
Confidence            99987653

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=7.2e-35  Score=212.96  Aligned_cols=168  Identities=30%  Similarity=0.442  Sum_probs=149.4

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++++
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~   83 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   83 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEE
Confidence            358999999999999999999999998888889888777 6777889999999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  160 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  160 (205)
                      |||++++++|+.+..|+..+..... .++|+++|+||+|+.+ ...+..+++..++..++++++++||+++.|++++|++
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  162 (181)
T 3t5g_A           84 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM-ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR  162 (181)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh-cceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Confidence            9999999999999999999876653 5799999999999965 5678889999999999999999999999999999999


Q ss_pred             HHHHHHHHhcc
Q 028686          161 IARDIKQRLAD  171 (205)
Q Consensus       161 i~~~~~~~~~~  171 (205)
                      +.+.+......
T Consensus       163 l~~~~~~~~~~  173 (181)
T 3t5g_A          163 IILEAEKMDGA  173 (181)
T ss_dssp             HHHHHHTC---
T ss_pred             HHHHHHHhcCC
Confidence            99998876543

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=7.2e-35  Score=212.12  Aligned_cols=166  Identities=38%  Similarity=0.685  Sum_probs=151.5

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   80 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   80 (205)
                      |..+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++++|+++
T Consensus        12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   91 (179)
T 2y8e_A           12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV   91 (179)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            45689999999999999999999999988888899998898888999999999999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686           81 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  160 (205)
Q Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  160 (205)
                      +|||++++++++.+..|+..+......++|+++|+||+|+.+ ...+..++...++...+++++++||+++.|++++|++
T Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  170 (179)
T 2y8e_A           92 VVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD-KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRR  170 (179)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGG-GCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc-cCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            999999999999999999999877666899999999999965 4557788888999999999999999999999999999


Q ss_pred             HHHHHHH
Q 028686          161 IARDIKQ  167 (205)
Q Consensus       161 i~~~~~~  167 (205)
                      |.+.+.+
T Consensus       171 l~~~~~~  177 (179)
T 2y8e_A          171 VAAALPG  177 (179)
T ss_dssp             HHHTCC-
T ss_pred             HHHHHhh
Confidence            9886643

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.9e-34  Score=212.98  Aligned_cols=167  Identities=40%  Similarity=0.730  Sum_probs=153.4

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++++..++..+++.+|++|+|
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v  104 (193)
T 2oil_A           25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLV  104 (193)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEE
Confidence            58999999999999999999999998888889989888888888888999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||++++.++..+..|+..+......+.|+++|+||+|+.+ ...+..+++..++...+++++++||+++.|++++|++|.
T Consensus       105 ~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  183 (193)
T 2oil_A          105 FDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQ-AREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVL  183 (193)
T ss_dssp             EETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999999999999877667899999999999965 345678889999999999999999999999999999999


Q ss_pred             HHHHHHhc
Q 028686          163 RDIKQRLA  170 (205)
Q Consensus       163 ~~~~~~~~  170 (205)
                      +.+.++..
T Consensus       184 ~~i~~~~~  191 (193)
T 2oil_A          184 KEIFAKVS  191 (193)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            99987654

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=8.4e-35  Score=216.41  Aligned_cols=169  Identities=42%  Similarity=0.732  Sum_probs=144.3

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+|+|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+|
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v  104 (200)
T 2o52_A           25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLV  104 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEE
Confidence            58999999999999999999999988888888888888888888999889999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||++++++++.+..|+..+......++|+++|+||+|+.+ ...+..+++..++...+++++++||++|.|++++|++|.
T Consensus       105 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~  183 (200)
T 2o52_A          105 YDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDP-EREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCA  183 (200)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             EECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999999999999887667899999999999964 455777888999999999999999999999999999999


Q ss_pred             HHHHHHhccc
Q 028686          163 RDIKQRLADT  172 (205)
Q Consensus       163 ~~~~~~~~~~  172 (205)
                      +.+.++.+..
T Consensus       184 ~~i~~~~~~~  193 (200)
T 2o52_A          184 RTILNKIDSG  193 (200)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHhcC
Confidence            9998776543

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.1e-34  Score=210.11  Aligned_cols=167  Identities=49%  Similarity=0.903  Sum_probs=143.2

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   80 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   80 (205)
                      ..++|+++|++|+|||||+++|++..+. ..+.++.+.++....+.+++..+.+.+||+||++.+..++..+++++|+++
T Consensus         9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   88 (180)
T 2g6b_A            9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALL   88 (180)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEE
Confidence            3589999999999999999999999875 567788888888888888999999999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686           81 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  160 (205)
Q Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  160 (205)
                      +|||++++++++.+..|+..+......+.|+++|+||+|+.+ ...+..+++..++...+++++++||+++.|++++|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  167 (180)
T 2g6b_A           89 LLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH-ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTA  167 (180)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS-CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            999999999999999999999887767899999999999975 4557788889999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 028686          161 IARDIKQRL  169 (205)
Q Consensus       161 i~~~~~~~~  169 (205)
                      +.+.+.++.
T Consensus       168 l~~~~~~~~  176 (180)
T 2g6b_A          168 IAKELKRRS  176 (180)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHHHHHh
Confidence            999886543

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=3e-34  Score=210.04  Aligned_cols=164  Identities=34%  Similarity=0.561  Sum_probs=149.6

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+|+|++|||||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++++|++++
T Consensus        17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (183)
T 3kkq_A           17 PTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI   95 (183)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            468999999999999999999999988888888888766 6777889999999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCC-CCCCHHHHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK-TNLNVEQVFF  159 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~gi~~~~~  159 (205)
                      |||++++++|+.+..|+..+.... ..++|+++|+||+|+.+ ...+..++++.++..++++++++||+ ++.|++++|+
T Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~  174 (183)
T 3kkq_A           96 VYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH-LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH  174 (183)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCST-TCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchh-ccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHH
Confidence            999999999999999999987643 36799999999999965 56788899999999999999999999 9999999999


Q ss_pred             HHHHHHHH
Q 028686          160 SIARDIKQ  167 (205)
Q Consensus       160 ~i~~~~~~  167 (205)
                      +|.+.+.+
T Consensus       175 ~l~~~i~~  182 (183)
T 3kkq_A          175 DLVRVIRQ  182 (183)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            99998865

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=2.4e-34  Score=207.70  Aligned_cols=163  Identities=37%  Similarity=0.680  Sum_probs=150.4

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++++
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   84 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII   84 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEE
Confidence            46899999999999999999999999888888999988888888899989999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  161 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i  161 (205)
                      |||++++++++.+..|+..+.....+.+|+++|+||+|+.+ ...+..+++..++...+++++++||+++.|++++|++|
T Consensus        85 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i  163 (170)
T 1z0j_A           85 VYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD-VREVMERDAKDYADSIHAIFVETSAKNAININELFIEI  163 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence            99999999999999999999887667899999999999965 35577888999999999999999999999999999999


Q ss_pred             HHHH
Q 028686          162 ARDI  165 (205)
Q Consensus       162 ~~~~  165 (205)
                      .+.+
T Consensus       164 ~~~i  167 (170)
T 1z0j_A          164 SRRI  167 (170)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            8765

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=2.6e-34  Score=209.50  Aligned_cols=168  Identities=34%  Similarity=0.564  Sum_probs=150.3

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..++|+++|.+|||||||+++|++..+...+.+|.+..+. ..+.+++..+.+.+||+||++++..++..+++.+|++++
T Consensus         8 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~   86 (181)
T 2fn4_A            8 ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLL   86 (181)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEE
Confidence            4689999999999999999999999988888888887665 667888888999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  160 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  160 (205)
                      |||+++++++..+..|+..+.... ..++|+++|+||+|+.+ ...+..+++..++...+++++++||++|.|++++|++
T Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  165 (181)
T 2fn4_A           87 VFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES-QRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQ  165 (181)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence            999999999999999999885543 46799999999999965 4557788889999999999999999999999999999


Q ss_pred             HHHHHHHHhcc
Q 028686          161 IARDIKQRLAD  171 (205)
Q Consensus       161 i~~~~~~~~~~  171 (205)
                      |.+.+.++.+.
T Consensus       166 l~~~~~~~~~~  176 (181)
T 2fn4_A          166 LVRAVRKYQEQ  176 (181)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHhhcc
Confidence            99999876543

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.2e-34  Score=214.63  Aligned_cols=163  Identities=34%  Similarity=0.512  Sum_probs=143.5

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .++|+|+|++|||||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+||+||++++..++..+++.+|++++|
T Consensus         8 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   86 (199)
T 2gf0_A            8 DYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILV   86 (199)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEE
Confidence            589999999999999999999999888777788775443 5567788889999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  160 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  160 (205)
                      ||++++++++.+..|+..+.....  ++.|+++|+||+|+.+  ..+..+++..++..++++++++||++|.|++++|++
T Consensus        87 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  164 (199)
T 2gf0_A           87 FSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ--REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQE  164 (199)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS--CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc--cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Confidence            999999999999999888876543  4689999999999964  456778888999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 028686          161 IARDIKQR  168 (205)
Q Consensus       161 i~~~~~~~  168 (205)
                      |.+.+.++
T Consensus       165 l~~~~~~~  172 (199)
T 2gf0_A          165 LLTLETRR  172 (199)
T ss_dssp             HHHHCSSS
T ss_pred             HHHHHhhh
Confidence            99877544

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.9e-35  Score=218.24  Aligned_cols=167  Identities=50%  Similarity=0.900  Sum_probs=153.6

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus        23 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v  102 (191)
T 3dz8_A           23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM  102 (191)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEE
Confidence            58999999999999999999999998888888888888888888888889999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||++++++|+.+..|+..+......++|+++|+||+|+.+ ...+..++++.++...+++++++||++|.|++++|++|.
T Consensus       103 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  181 (191)
T 3dz8_A          103 YDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE-ERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLV  181 (191)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             EECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-ccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999999999887767899999999999965 456788889999999999999999999999999999999


Q ss_pred             HHHHHHhc
Q 028686          163 RDIKQRLA  170 (205)
Q Consensus       163 ~~~~~~~~  170 (205)
                      +.+.++..
T Consensus       182 ~~i~~~~~  189 (191)
T 3dz8_A          182 DAICDKMS  189 (191)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHhcc
Confidence            99987654

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=1e-34  Score=218.24  Aligned_cols=168  Identities=18%  Similarity=0.405  Sum_probs=147.0

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   80 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   80 (205)
                      |..+||+|+|++|||||||+++|+++.+...+.+|.+.++ ...+.+++..+.+.+||++|++.+..++..+++++|++|
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  103 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL  103 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE
Confidence            3569999999999999999999999999888889988766 456677888899999999999999999999999999999


Q ss_pred             EEEeCCChhHHHH-HHHHHHHHHhhcCCCCcEEEEEeCCCCCCC-----------CCccCHHHHHHHHHHhCC-cEEEEc
Q 028686           81 LVYDVTDESSFNN-IRNWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETS  147 (205)
Q Consensus        81 ~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~S  147 (205)
                      +|||++++++|+. +..|+..+.... +++|+++|+||+|+.++           ...+..+++..++..+++ +++++|
T Consensus       104 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  182 (214)
T 3q3j_B          104 LCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGS  182 (214)
T ss_dssp             EEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEec
Confidence            9999999999999 688999998875 57999999999999652           256888999999999998 999999


Q ss_pred             CCCCCC-HHHHHHHHHHHHHHHhc
Q 028686          148 AKTNLN-VEQVFFSIARDIKQRLA  170 (205)
Q Consensus       148 a~~~~g-i~~~~~~i~~~~~~~~~  170 (205)
                      |++|.| ++++|+++++.+.+...
T Consensus       183 A~~g~g~v~~lf~~l~~~~~~~~~  206 (214)
T 3q3j_B          183 AFTSEKSIHSIFRTASMLCLNKPS  206 (214)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHC---
T ss_pred             cCCCcccHHHHHHHHHHHHhccCc
Confidence            999998 99999999999876544

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=3.4e-34  Score=210.57  Aligned_cols=163  Identities=24%  Similarity=0.348  Sum_probs=143.4

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   80 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   80 (205)
                      |..+||+|+|++|||||||+++|+++.+...+.+|.+  .+...+.+++..+.+.+|||+|++.+.     +++.+|+++
T Consensus        18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i   90 (184)
T 3ihw_A           18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV   90 (184)
T ss_dssp             CCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE--EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc--eEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEE
Confidence            4679999999999999999999999998887777743  344788899999999999999998776     777899999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCC-CCCccCHHHHHHHHHHhC-CcEEEEcCCCCCCHHHH
Q 028686           81 LVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDE-SKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQV  157 (205)
Q Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~  157 (205)
                      +|||++++++|+.+..|+..+..... .++|+++|+||+|+.+ ....+..+++..++..++ ++++++||++|.|++++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~l  170 (184)
T 3ihw_A           91 FVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERV  170 (184)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHH
Confidence            99999999999999999999987653 5799999999999952 346678899999999997 89999999999999999


Q ss_pred             HHHHHHHHHHHhc
Q 028686          158 FFSIARDIKQRLA  170 (205)
Q Consensus       158 ~~~i~~~~~~~~~  170 (205)
                      |+++.+.+.+.++
T Consensus       171 f~~l~~~i~~~~~  183 (184)
T 3ihw_A          171 FQDVAQKVVALRK  183 (184)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999887643

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=4.5e-34  Score=210.47  Aligned_cols=169  Identities=44%  Similarity=0.806  Sum_probs=152.2

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEE-EEEEEECCE---------EEEEEEEeCCChhhhhhhhhhh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFK-IRTIELDGK---------RIKLQIWDTAGQERFRTITTAY   72 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~---------~~~~~i~D~~g~~~~~~~~~~~   72 (205)
                      .+||+|+|++|+|||||+++|.++.+...+.+|.+.++. ...+.+++.         .+.+.+||+||++.+..++..+
T Consensus        11 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~   90 (195)
T 3bc1_A           11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAF   90 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHT
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHHH
Confidence            489999999999999999999999988888899998887 666777665         7899999999999999999999


Q ss_pred             ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCC
Q 028686           73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN  151 (205)
Q Consensus        73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  151 (205)
                      ++++|++|+|||++++.++..+..|+..+..... .++|+++|+||+|+.+ ...+..+++..++...+++++++||+++
T Consensus        91 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  169 (195)
T 3bc1_A           91 FRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLED-QRAVKEEEARELAEKYGIPYFETSAANG  169 (195)
T ss_dssp             TTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCCEEECCTTTC
T ss_pred             HcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ccccCHHHHHHHHHHcCCCEEEEECCCC
Confidence            9999999999999999999999999999987764 6799999999999965 3557788899999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhccc
Q 028686          152 LNVEQVFFSIARDIKQRLADT  172 (205)
Q Consensus       152 ~gi~~~~~~i~~~~~~~~~~~  172 (205)
                      .|++++|++|.+.+.++....
T Consensus       170 ~~v~~l~~~l~~~~~~~~~~~  190 (195)
T 3bc1_A          170 TNISHAIEMLLDLIMKRMERS  190 (195)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHhhhc
Confidence            999999999999998876553

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=2.4e-34  Score=211.81  Aligned_cols=166  Identities=41%  Similarity=0.768  Sum_probs=147.5

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh-hhhhhhccCCcEE
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-TITTAYYRGAMGI   79 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~d~~   79 (205)
                      |..+||+|+|.+|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+||+||++++. .++..+++.+|++
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i   97 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV   97 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence            356899999999999999999999999888888999888888888999988999999999999988 8899999999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCC---CCHH
Q 028686           80 LLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN---LNVE  155 (205)
Q Consensus        80 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~gi~  155 (205)
                      |+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+ ...+..++++.++...+++++++||+++   .|++
T Consensus        98 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~  176 (189)
T 1z06_A           98 VFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS-AIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVE  176 (189)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHH
Confidence            99999999999999999999998775 46799999999999965 4567788899999999999999999999   9999


Q ss_pred             HHHHHHHHHHHH
Q 028686          156 QVFFSIARDIKQ  167 (205)
Q Consensus       156 ~~~~~i~~~~~~  167 (205)
                      ++|++|.+.+.+
T Consensus       177 ~l~~~l~~~i~~  188 (189)
T 1z06_A          177 AIFMTLAHKLKS  188 (189)
T ss_dssp             HHHHHHC-----
T ss_pred             HHHHHHHHHHhh
Confidence            999999887754

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=2e-34  Score=207.68  Aligned_cols=164  Identities=36%  Similarity=0.664  Sum_probs=150.2

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++++
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   83 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVL   83 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEE
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEE
Confidence            36899999999999999999999999888888998888888888899989999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  161 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i  161 (205)
                      |||++++++++.+..|+..+.... .+.|+++|+||+|+.+ ...+..++++.++...+++++++||+++.|++++|++|
T Consensus        84 v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  161 (168)
T 1z2a_A           84 VFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLD-DSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL  161 (168)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGG-GCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCc-ccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence            999999999999999999998766 5799999999999965 34567888999999999999999999999999999999


Q ss_pred             HHHHHH
Q 028686          162 ARDIKQ  167 (205)
Q Consensus       162 ~~~~~~  167 (205)
                      .+.+.+
T Consensus       162 ~~~~~~  167 (168)
T 1z2a_A          162 AEKHLQ  167 (168)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            988753

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=4.9e-34  Score=213.69  Aligned_cols=167  Identities=56%  Similarity=1.020  Sum_probs=153.2

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .++|+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus        20 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   99 (213)
T 3cph_A           20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILV   99 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEE
Confidence            58999999999999999999999998888889998888888889999889999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||++++.+++.+..|+..+......++|+++|+||+|+.  ...+..+++..++...+++++++||+++.|++++|++|.
T Consensus       100 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  177 (213)
T 3cph_A          100 YDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA  177 (213)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS--SCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc--ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            999999999999999999988776679999999999993  455678888999999999999999999999999999999


Q ss_pred             HHHHHHhcc
Q 028686          163 RDIKQRLAD  171 (205)
Q Consensus       163 ~~~~~~~~~  171 (205)
                      +.+.+....
T Consensus       178 ~~~~~~~~~  186 (213)
T 3cph_A          178 KLIQEKIDS  186 (213)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhh
Confidence            999876543

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.7e-34  Score=213.42  Aligned_cols=166  Identities=45%  Similarity=0.858  Sum_probs=144.2

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+
T Consensus        25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iil  104 (192)
T 2il1_A           25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIIL  104 (192)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence            35899999999999999999999998888888888888888888999989999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHh-CCcEEEEcCCCCCCHHHHHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEQVFFS  160 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~~~~~  160 (205)
                      |||++++++++.+..|+..+......+.|+++|+||+|+.+ ...+..++++.+++.. +++++++||++|.|++++|++
T Consensus       105 V~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~  183 (192)
T 2il1_A          105 VYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET-DREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLK  183 (192)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc-ccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999887767899999999999965 4567788888888874 789999999999999999999


Q ss_pred             HHHHHHHH
Q 028686          161 IARDIKQR  168 (205)
Q Consensus       161 i~~~~~~~  168 (205)
                      |.+.+.++
T Consensus       184 l~~~i~~~  191 (192)
T 2il1_A          184 LVDDILKK  191 (192)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            99988653

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=3.2e-34  Score=206.46  Aligned_cols=163  Identities=34%  Similarity=0.646  Sum_probs=145.9

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   80 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   80 (205)
                      |..+||+++|++|||||||+++|.++.+...+.+|.+..+. ..+.+++..+.+.+||+||++.+..++..+++++|+++
T Consensus         1 m~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   79 (167)
T 1c1y_A            1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA   79 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence            77899999999999999999999999888888888875554 56677888899999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHh-CCcEEEEcCCCCCCHHHHH
Q 028686           81 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEQVF  158 (205)
Q Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~~~  158 (205)
                      +|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+ ...+..+++..++..+ +++++++||++|.|++++|
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  158 (167)
T 1c1y_A           80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED-ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF  158 (167)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccc-cccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHH
Confidence            9999999999999999999987764 35799999999999965 4557788889999887 7899999999999999999


Q ss_pred             HHHHHHH
Q 028686          159 FSIARDI  165 (205)
Q Consensus       159 ~~i~~~~  165 (205)
                      ++|.+.+
T Consensus       159 ~~l~~~i  165 (167)
T 1c1y_A          159 YDLVRQI  165 (167)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999876

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.7e-34  Score=213.35  Aligned_cols=165  Identities=35%  Similarity=0.665  Sum_probs=150.8

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++++..++..+++.+|++|+
T Consensus        22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iil  101 (192)
T 2fg5_A           22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVI  101 (192)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEE
Confidence            35899999999999999999999999888888999988888888888888999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  161 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i  161 (205)
                      |||++++++++.+..|+..+......++|+++|+||+|+.+ ...+..++++++++..+++++++||+++.|++++|++|
T Consensus       102 V~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  180 (192)
T 2fg5_A          102 VYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD-IREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGI  180 (192)
T ss_dssp             EEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence            99999999999999999999887766899999999999964 35677889999999999999999999999999999999


Q ss_pred             HHHHHH
Q 028686          162 ARDIKQ  167 (205)
Q Consensus       162 ~~~~~~  167 (205)
                      .+.+.+
T Consensus       181 ~~~i~~  186 (192)
T 2fg5_A          181 SRQIPP  186 (192)
T ss_dssp             HHTCC-
T ss_pred             HHHHHh
Confidence            987644

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=5e-34  Score=207.07  Aligned_cols=169  Identities=29%  Similarity=0.420  Sum_probs=137.3

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh--hhhhhhhhccCCcE
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--FRTITTAYYRGAMG   78 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~~~~~~~d~   78 (205)
                      +..+||+++|++|||||||+++|.+..+...+ ++.+.+++...+.+++..+.+.+||+||++.  +..+...+++.+|+
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~   80 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA   80 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence            45789999999999999999999998865443 3456667777888899999999999999987  56777888999999


Q ss_pred             EEEEEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHH
Q 028686           79 ILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV  157 (205)
Q Consensus        79 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  157 (205)
                      +++|||++++++|+.+..|+..+.... ..++|+++|+||+|+.+ ...+..++++.++..++++++++||++|.|++++
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  159 (175)
T 2nzj_A           81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR-CREVSVEEGRACAVVFDCKFIETSATLQHNVAEL  159 (175)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTT-TCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcc-ccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Confidence            999999999999999999999887753 35799999999999965 4567788888999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcc
Q 028686          158 FFSIARDIKQRLAD  171 (205)
Q Consensus       158 ~~~i~~~~~~~~~~  171 (205)
                      |++|.+.+..+.+.
T Consensus       160 ~~~l~~~~~~~~~~  173 (175)
T 2nzj_A          160 FEGVVRQLRLRRRD  173 (175)
T ss_dssp             HHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHhhcc
Confidence            99999998776543

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=6.1e-35  Score=212.57  Aligned_cols=167  Identities=34%  Similarity=0.523  Sum_probs=147.6

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECC-EEEEEEEEeCCChhhhhhhhhhhccCCcEE
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG-KRIKLQIWDTAGQERFRTITTAYYRGAMGI   79 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   79 (205)
                      +..+||+|+|++|||||||+++|.+..+...+.+|.+.++....+.+++ ..+.+.+||+||++.+..++..+++++|++
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   83 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV   83 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence            3569999999999999999999999988777788888888888888876 678999999999999999999999999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHhhcC--CCCc-EEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHH
Q 028686           80 LLVYDVTDESSFNNIRNWIRNIEQHAS--DNVN-KVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ  156 (205)
Q Consensus        80 i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p-iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  156 (205)
                      ++|||++++++++.+..|+..+.....  .+.| +++|+||+|+.+ ...+..+++..++...+++++++||++|.|+++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  162 (178)
T 2hxs_A           84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH-MRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL  162 (178)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG-GCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc-ccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence            999999999999999999999876532  2355 889999999965 355778889999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028686          157 VFFSIARDIKQR  168 (205)
Q Consensus       157 ~~~~i~~~~~~~  168 (205)
                      +|++|.+.+.+.
T Consensus       163 l~~~l~~~~~~~  174 (178)
T 2hxs_A          163 CFQKVAAEILGI  174 (178)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhh
Confidence            999999987553

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=3.4e-34  Score=206.00  Aligned_cols=165  Identities=36%  Similarity=0.607  Sum_probs=147.7

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   80 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   80 (205)
                      |..+||+++|++|+|||||+++|.++.+...+.++.+. .....+.+++..+.+.+||+||++.+..++..+++.+|+++
T Consensus         1 m~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i   79 (167)
T 1kao_A            1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI   79 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcce-eEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            77899999999999999999999999988777787764 44677788888899999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHH
Q 028686           81 LVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF  159 (205)
Q Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  159 (205)
                      +|||++++++++.+..|+..+..... .+.|+++|+||+|+.+ ...+..+++..++...+++++++||++|.|++++|+
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  158 (167)
T 1kao_A           80 LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES-EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFA  158 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccc-cccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHH
Confidence            99999999999999999998877643 5799999999999964 456778888999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 028686          160 SIARDIKQ  167 (205)
Q Consensus       160 ~i~~~~~~  167 (205)
                      ++.+.+.+
T Consensus       159 ~l~~~~~~  166 (167)
T 1kao_A          159 EIVRQMNY  166 (167)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            99988754

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=8.3e-34  Score=206.39  Aligned_cols=163  Identities=39%  Similarity=0.671  Sum_probs=145.5

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .++|+++|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus         7 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   86 (177)
T 1wms_A            7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLT   86 (177)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEE
Confidence            58999999999999999999999998888889999888888889999989999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-HhCCcEEEEcCCCCCCHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAVPTSKGQALAD-EYGIKFFETSAKTNLNVEQV  157 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~----~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~~  157 (205)
                      ||+++++++..+..|+..+.....    .++|+++|+||+|+.  ...+..+++..++. ..+++++++||++|.|++++
T Consensus        87 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  164 (177)
T 1wms_A           87 FSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS--ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAA  164 (177)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS--SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHH
T ss_pred             EECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc--ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHH
Confidence            999999999999999999977653    678999999999996  35577888888888 55689999999999999999


Q ss_pred             HHHHHHHHHH
Q 028686          158 FFSIARDIKQ  167 (205)
Q Consensus       158 ~~~i~~~~~~  167 (205)
                      |+++.+.+.+
T Consensus       165 ~~~l~~~~~~  174 (177)
T 1wms_A          165 FEEAVRRVLA  174 (177)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999998865

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=2.3e-34  Score=211.93  Aligned_cols=163  Identities=29%  Similarity=0.463  Sum_probs=142.5

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+|+|++|||||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.+||++|++.+..+ ..+++.+|++++
T Consensus        20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~il   97 (187)
T 3c5c_A           20 LEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLV   97 (187)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEE
Confidence            468999999999999999999999998888889988666 456778888999999999999988875 678999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcC-CCCCCHHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHAS---DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSA-KTNLNVEQV  157 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~gi~~~  157 (205)
                      |||++++++|+.+..|+..+.....   .++|+++|+||+|+.+ ...+..+++.+++..++++++++|| +++.|++++
T Consensus        98 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~l  176 (187)
T 3c5c_A           98 VYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ-YRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHV  176 (187)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG-GCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh-cCccCHHHHHHHHHHcCCcEEEEeecCccccHHHH
Confidence            9999999999999999999987642   5799999999999965 4567889999999999999999999 899999999


Q ss_pred             HHHHHHHHHH
Q 028686          158 FFSIARDIKQ  167 (205)
Q Consensus       158 ~~~i~~~~~~  167 (205)
                      |++|++.+.+
T Consensus       177 f~~l~~~i~~  186 (187)
T 3c5c_A          177 FHEAVREARR  186 (187)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhh
Confidence            9999988753

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=5.5e-34  Score=205.12  Aligned_cols=165  Identities=35%  Similarity=0.621  Sum_probs=144.9

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   80 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   80 (205)
                      |..+||+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++++..++..+++.+|+++
T Consensus         2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   80 (168)
T 1u8z_A            2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   80 (168)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEE
Confidence            6779999999999999999999999998878888877555 355678888899999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHH
Q 028686           81 LVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF  159 (205)
Q Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  159 (205)
                      +|||++++++++.+..|+..+..... .+.|+++|+||+|+.+ ...+..+++..++...+++++++||+++.|++++|+
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  159 (168)
T 1u8z_A           81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED-KRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFF  159 (168)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccc-cCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHH
Confidence            99999999999999999999987664 5799999999999965 345778899999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 028686          160 SIARDIKQ  167 (205)
Q Consensus       160 ~i~~~~~~  167 (205)
                      ++.+.+.+
T Consensus       160 ~l~~~i~~  167 (168)
T 1u8z_A          160 DLMREIRA  167 (168)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            99998753

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=1.2e-34  Score=215.35  Aligned_cols=165  Identities=44%  Similarity=0.749  Sum_probs=139.6

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil  106 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLL  106 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEE
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEE
Confidence            35899999999999999999999999888888888888888888899999999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC-----CCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE-----SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ  156 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  156 (205)
                      |||++++++++.+..|+..+......++|+++|+||+|+.+     ....+..+++..++...+++++++||++|.|+++
T Consensus       107 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~e  186 (199)
T 2p5s_A          107 LYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVE  186 (199)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHH
Confidence            99999999999999999999877666799999999999963     2456778888999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 028686          157 VFFSIARDIK  166 (205)
Q Consensus       157 ~~~~i~~~~~  166 (205)
                      +|++|.+.+.
T Consensus       187 l~~~l~~~i~  196 (199)
T 2p5s_A          187 AVLHLAREVK  196 (199)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            9999998875

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=7.4e-34  Score=210.06  Aligned_cols=166  Identities=30%  Similarity=0.541  Sum_probs=148.5

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+++|++|+|||||+++|.++.+...+.+|.+..+. ..+.+++..+.+.+||+||++.+..++..+++++|++++
T Consensus        22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~  100 (194)
T 3reg_A           22 KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLL  100 (194)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEE
Confidence            4589999999999999999999999988888888886665 467788899999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC-CCccCHHHHHHHHHHhCCc-EEEEcCCCCCCHHHHH
Q 028686           82 VYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDES-KRAVPTSKGQALADEYGIK-FFETSAKTNLNVEQVF  158 (205)
Q Consensus        82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~~~  158 (205)
                      |||++++++|+.+ ..|+..+.... +++|+++|+||+|+.+. ...+..+++..++...++. ++++||++|.|++++|
T Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  179 (194)
T 3reg_A          101 CFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF  179 (194)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHH
Confidence            9999999999997 66888887664 57999999999999753 3567889999999999987 9999999999999999


Q ss_pred             HHHHHHHHHHh
Q 028686          159 FSIARDIKQRL  169 (205)
Q Consensus       159 ~~i~~~~~~~~  169 (205)
                      +++.+.+.++.
T Consensus       180 ~~l~~~i~~~~  190 (194)
T 3reg_A          180 EKSVDCIFSNK  190 (194)
T ss_dssp             HHHHHHHHCSC
T ss_pred             HHHHHHHHhcC
Confidence            99999887643

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=3e-34  Score=207.24  Aligned_cols=165  Identities=25%  Similarity=0.337  Sum_probs=134.1

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhh-hhhhhccCCcEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-ITTAYYRGAMGILL   81 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~d~~i~   81 (205)
                      .+||+++|++|||||||+++|.+........++.+.++....+.+++..+.+.+||++|++.+.. ++..+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            48999999999999999999998877666666666778888888999999999999999998875 77778899999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  160 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  160 (205)
                      |||++++++|+.+..|+..+..... .++|+++|+||+|+.+ ...+..+++..++...+++++++||+++.|++++|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  160 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR-SREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEG  160 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhh-cccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHH
Confidence            9999999999999999999987654 4799999999999965 4668889999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 028686          161 IARDIKQR  168 (205)
Q Consensus       161 i~~~~~~~  168 (205)
                      +.+.+..+
T Consensus       161 l~~~i~~~  168 (169)
T 3q85_A          161 AVRQIRLR  168 (169)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            99988764

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=2.4e-34  Score=209.85  Aligned_cols=169  Identities=41%  Similarity=0.654  Sum_probs=138.1

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEEC-CEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   80 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   80 (205)
                      ..++|+++|++|||||||+++|++..+...+.++.+.++....+.++ +..+.+.+||+||++.+..++..+++.+|++|
T Consensus         7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   86 (182)
T 1ky3_A            7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCV   86 (182)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEE
Confidence            35899999999999999999999999888888888888887777776 56688999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-HhCCcEEEEcCCCCCCHH
Q 028686           81 LVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAVPTSKGQALAD-EYGIKFFETSAKTNLNVE  155 (205)
Q Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~  155 (205)
                      +|||++++++++.+..|+..+.....    .++|+++|+||+|+.+....+..+++..++. ..+++++++||++|.|++
T Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  166 (182)
T 1ky3_A           87 LVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVD  166 (182)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHH
T ss_pred             EEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHH
Confidence            99999999999999999999877653    6799999999999966556677888888888 456899999999999999


Q ss_pred             HHHHHHHHHHHHHhc
Q 028686          156 QVFFSIARDIKQRLA  170 (205)
Q Consensus       156 ~~~~~i~~~~~~~~~  170 (205)
                      ++|++|.+.+.++++
T Consensus       167 ~l~~~l~~~~~~~~~  181 (182)
T 1ky3_A          167 TAFEEIARSALQQNQ  181 (182)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999999987653

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=6.6e-34  Score=207.32  Aligned_cols=164  Identities=23%  Similarity=0.362  Sum_probs=140.1

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   80 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   80 (205)
                      |..+||+++|++|||||||+++|+++.+.. +.+|.+..+ ...+.+++..+.+.+||++|+++     ..+++++|++|
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i   77 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI   77 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence            356899999999999999999999998876 677777444 57778899999999999999886     45778899999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHhhc---CCCCcEEEEEeCCCCCC-CCCccCHHHHHHHHHHh-CCcEEEEcCCCCCCHH
Q 028686           81 LVYDVTDESSFNNIRNWIRNIEQHA---SDNVNKVLVGNKADMDE-SKRAVPTSKGQALADEY-GIKFFETSAKTNLNVE  155 (205)
Q Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~piiiv~nK~Dl~~-~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~  155 (205)
                      +|||++++++|+.+..|++.+....   .+++|+++|+||+|+.+ ....+..+++..++... +++++++||++|.|++
T Consensus        78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  157 (178)
T 2iwr_A           78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD  157 (178)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence            9999999999999999877765543   25799999999999953 34567888899998876 6899999999999999


Q ss_pred             HHHHHHHHHHHHHhcc
Q 028686          156 QVFFSIARDIKQRLAD  171 (205)
Q Consensus       156 ~~~~~i~~~~~~~~~~  171 (205)
                      ++|+++.+.+.+..+.
T Consensus       158 ~lf~~l~~~~~~~~~~  173 (178)
T 2iwr_A          158 RVFQEVAQKVVTLRKQ  173 (178)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999876654

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=9.7e-34  Score=209.08  Aligned_cols=167  Identities=44%  Similarity=0.761  Sum_probs=152.1

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   93 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL   93 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence            35899999999999999999999999888889999988888888999999999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  160 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  160 (205)
                      |||+++++++..+..|+..+..... .++|+++|+||+|+.  ...+..+++..++...+++++++||+++.|++++|++
T Consensus        94 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  171 (195)
T 1x3s_A           94 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE--NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE  171 (195)
T ss_dssp             EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS--SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc--ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            9999999999999999999977653 579999999999994  3556788899999999999999999999999999999


Q ss_pred             HHHHHHHHhc
Q 028686          161 IARDIKQRLA  170 (205)
Q Consensus       161 i~~~~~~~~~  170 (205)
                      |.+.+.+...
T Consensus       172 l~~~~~~~~~  181 (195)
T 1x3s_A          172 LVEKIIQTPG  181 (195)
T ss_dssp             HHHHHHTSGG
T ss_pred             HHHHHHhhhh
Confidence            9999876543

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=9.4e-35  Score=217.71  Aligned_cols=168  Identities=31%  Similarity=0.599  Sum_probs=143.6

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+++|++|+|||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+||+||++.+..++..+++++|++|+
T Consensus         8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il   86 (212)
T 2j0v_A            8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   86 (212)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence            458999999999999999999999998888888887555 4566788888999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCCC-------ccCHHHHHHHHHHhCC-cEEEEcCCCCC
Q 028686           82 VYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKR-------AVPTSKGQALADEYGI-KFFETSAKTNL  152 (205)
Q Consensus        82 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~-------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  152 (205)
                      |||++++++|+.+. .|+..+.... +++|++||+||+|+.+...       .+..+++..++..++. +++++||++|.
T Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~  165 (212)
T 2j0v_A           87 AFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQ  165 (212)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCC
Confidence            99999999999997 7999998765 4799999999999865321       2467888999999995 99999999999


Q ss_pred             CHHHHHHHHHHHHHHHhcc
Q 028686          153 NVEQVFFSIARDIKQRLAD  171 (205)
Q Consensus       153 gi~~~~~~i~~~~~~~~~~  171 (205)
                      |++++|++|++.+.+..+.
T Consensus       166 gi~~l~~~l~~~~~~~~~~  184 (212)
T 2j0v_A          166 NVKAVFDTAIKVVLQPPRR  184 (212)
T ss_dssp             THHHHHHHHHHHHHCC---
T ss_pred             CHHHHHHHHHHHHhhhhhh
Confidence            9999999999998765443

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=3.7e-34  Score=212.26  Aligned_cols=166  Identities=25%  Similarity=0.329  Sum_probs=143.5

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhh-hhhhhccCCcEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-ITTAYYRGAMGIL   80 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~d~~i   80 (205)
                      ..+||+|+|++|||||||+++|.+......+.++.+.++....+.+++..+.+.+||++|++.+.. ++..+++.+|++|
T Consensus        22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~i  101 (195)
T 3cbq_A           22 GIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFL  101 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEE
Confidence            358999999999999999999986554434455566667777788899999999999999987764 7788899999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHH
Q 028686           81 LVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF  159 (205)
Q Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  159 (205)
                      +|||++++++|+.+..|+..+..... .++|+++|+||+|+.+ ...+..++++.++..++++++++||+++.|++++|+
T Consensus       102 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~  180 (195)
T 3cbq_A          102 IVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR-SREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFE  180 (195)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccc-cCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHH
Confidence            99999999999999999999887653 5799999999999965 456778899999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 028686          160 SIARDIKQR  168 (205)
Q Consensus       160 ~i~~~~~~~  168 (205)
                      ++++.+...
T Consensus       181 ~l~~~i~~~  189 (195)
T 3cbq_A          181 GAVRQIRLR  189 (195)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHHh
Confidence            999988643

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=1.5e-33  Score=206.42  Aligned_cols=169  Identities=34%  Similarity=0.611  Sum_probs=149.8

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   80 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   80 (205)
                      |..+||+|+|++|||||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||+||++++..++..+++.+|+++
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   94 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence            4568999999999999999999999998888888877555 455678888899999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHH
Q 028686           81 LVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF  159 (205)
Q Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  159 (205)
                      +|||+++++++..+..|+..+..... .++|+++|+||+|+.+ ...+..+++..+++..+++++++||+++.|++++|+
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  173 (187)
T 2a9k_A           95 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED-KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFF  173 (187)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHH
Confidence            99999999999999999999987764 4799999999999965 345778889999999999999999999999999999


Q ss_pred             HHHHHHHHHhcc
Q 028686          160 SIARDIKQRLAD  171 (205)
Q Consensus       160 ~i~~~~~~~~~~  171 (205)
                      +|.+.+.+++.+
T Consensus       174 ~l~~~i~~~~~~  185 (187)
T 2a9k_A          174 DLMREIRARKME  185 (187)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHhhcc
Confidence            999999876544

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=1.3e-33  Score=209.81  Aligned_cols=168  Identities=29%  Similarity=0.483  Sum_probs=141.2

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+++|++|||||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.+||+||++++..++..++.++|++++
T Consensus        19 ~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   97 (201)
T 2q3h_A           19 RGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLL   97 (201)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEE
Confidence            468999999999999999999999988888888887544 4667788888999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC-----------CCccCHHHHHHHHHHhCC-cEEEEcC
Q 028686           82 VYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETSA  148 (205)
Q Consensus        82 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa  148 (205)
                      |||++++++|+.+. .|+..+.... +++|+++|+||+|+.+.           ...+..+++..++...+. +++++||
T Consensus        98 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  176 (201)
T 2q3h_A           98 CFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSA  176 (201)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEec
Confidence            99999999999997 6999988765 47999999999999652           345778889999999887 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhcc
Q 028686          149 KTNLNVEQVFFSIARDIKQRLAD  171 (205)
Q Consensus       149 ~~~~gi~~~~~~i~~~~~~~~~~  171 (205)
                      ++|.|++++|++|.+.+.+....
T Consensus       177 ~~g~gi~~l~~~l~~~~~~~~~~  199 (201)
T 2q3h_A          177 LTQKNLKEVFDAAIVAGIQYSDT  199 (201)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHC-
T ss_pred             CCCCCHHHHHHHHHHHHhccccc
Confidence            99999999999999999877654

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.4e-34  Score=214.01  Aligned_cols=168  Identities=28%  Similarity=0.492  Sum_probs=144.5

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+|+|.+|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++++
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~  101 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVL  101 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEE
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEE
Confidence            468999999999999999999999998888888888666 5666677777899999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  160 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  160 (205)
                      |||++++++|+.+..|+..+..... .++|+++|+||+|+.+ ...+..+++..++...+++++++||++|.|++++|++
T Consensus       102 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  180 (201)
T 3oes_A          102 VYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSP-EREVQAVEGKKLAESWGATFMESSARENQLTQGIFTK  180 (201)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCcc-ccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHH
Confidence            9999999999999999999977643 5789999999999965 4667888999999999999999999999999999999


Q ss_pred             HHHHHHHHhcc
Q 028686          161 IARDIKQRLAD  171 (205)
Q Consensus       161 i~~~~~~~~~~  171 (205)
                      |.+.+.+....
T Consensus       181 l~~~i~~~~~~  191 (201)
T 3oes_A          181 VIQEIARVENS  191 (201)
T ss_dssp             HHHHHHHC---
T ss_pred             HHHHHHhhhhh
Confidence            99999876544

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=4e-34  Score=215.02  Aligned_cols=168  Identities=43%  Similarity=0.813  Sum_probs=150.3

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCE----------EEEEEEEeCCChhhhhhhhhhh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK----------RIKLQIWDTAGQERFRTITTAY   72 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~----------~~~~~i~D~~g~~~~~~~~~~~   72 (205)
                      .+||+|+|++|||||||+++|++..+...+.+|.+.++....+.+++.          .+.+.+||+||++.+..++..+
T Consensus        25 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~  104 (217)
T 2f7s_A           25 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF  104 (217)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHHH
Confidence            589999999999999999999999888888888888888777777665          7899999999999999999999


Q ss_pred             ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCC
Q 028686           73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN  151 (205)
Q Consensus        73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  151 (205)
                      ++.+|++|+|||++++++++.+..|+..+..... .++|+++|+||+|+.+ ...+..++++.++...+++++++||+++
T Consensus       105 ~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~g  183 (217)
T 2f7s_A          105 FRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD-QREVNERQARELADKYGIPYFETSAATG  183 (217)
T ss_dssp             HTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCCEEEEBTTTT
T ss_pred             hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccc-ccccCHHHHHHHHHHCCCcEEEEECCCC
Confidence            9999999999999999999999999988876553 6799999999999965 4557788899999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhcc
Q 028686          152 LNVEQVFFSIARDIKQRLAD  171 (205)
Q Consensus       152 ~gi~~~~~~i~~~~~~~~~~  171 (205)
                      .|++++|++|.+.+.++.+.
T Consensus       184 ~gi~~l~~~l~~~i~~~~~~  203 (217)
T 2f7s_A          184 QNVEKAVETLLDLIMKRMEQ  203 (217)
T ss_dssp             BTHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhc
Confidence            99999999999999876554

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=1.8e-34  Score=215.05  Aligned_cols=170  Identities=25%  Similarity=0.445  Sum_probs=113.8

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhC--CCCCCcccceeeEEEEEEEEECCE--EEEEEEEeCCChhhhhhhhhhhccCCc
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDG--SFTTSFITTIGIDFKIRTIELDGK--RIKLQIWDTAGQERFRTITTAYYRGAM   77 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d   77 (205)
                      ..++|+|+|++|||||||+++|++.  .+...+.+|.+.++....+.+++.  .+.+.+||+||++.+..++..+++.+|
T Consensus        19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   98 (208)
T 2yc2_C           19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVY   98 (208)
T ss_dssp             EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCc
Confidence            3589999999999999999999998  777788888888888888888877  889999999999999999999999999


Q ss_pred             EEEEEEeCCChhHHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCC-CCC
Q 028686           78 GILLVYDVTDESSFNNIRNWIRNIEQHAS---DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT-NLN  153 (205)
Q Consensus        78 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~g  153 (205)
                      ++|+|||++++++|+.+..|+..+.....   .++|+++|+||+|+.+....+..+++..++..++++++++||++ +.|
T Consensus        99 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~g  178 (208)
T 2yc2_C           99 YAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKD  178 (208)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC------
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcC
Confidence            99999999999999999999999988765   57999999999999652355778899999999999999999999 999


Q ss_pred             HHHHHHHHHHHHHHHhcc
Q 028686          154 VEQVFFSIARDIKQRLAD  171 (205)
Q Consensus       154 i~~~~~~i~~~~~~~~~~  171 (205)
                      ++++|++|.+.+.+..+.
T Consensus       179 i~~l~~~i~~~~~~~~~~  196 (208)
T 2yc2_C          179 ADAPFLSIATTFYRNYED  196 (208)
T ss_dssp             -CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999988766543

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.2e-33  Score=207.01  Aligned_cols=166  Identities=34%  Similarity=0.544  Sum_probs=147.7

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+|+|++|||||||+++|++..+...+.+|.+..+ ...+.+++..+.+.+||+||++. ..++..+++.+|++++
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iil  104 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVL  104 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEE
Confidence            358999999999999999999999998888888887555 45677888889999999999987 7778889999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCC-CHHHHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL-NVEQVFF  159 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~~~~  159 (205)
                      |||++++++|+.+..|+..+..... .++|+++|+||+|+.+ ...+..+++..++...+++++++||+++. |++++|+
T Consensus       105 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~  183 (196)
T 2atv_A          105 VYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH-SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFY  183 (196)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccccc-ccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHH
Confidence            9999999999999999999887643 6799999999999965 35677889999999999999999999999 9999999


Q ss_pred             HHHHHHHHHhc
Q 028686          160 SIARDIKQRLA  170 (205)
Q Consensus       160 ~i~~~~~~~~~  170 (205)
                      +|.+.+.++..
T Consensus       184 ~l~~~i~~~~~  194 (196)
T 2atv_A          184 ELCREVRRRRM  194 (196)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHhhcc
Confidence            99999987654

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=6.5e-33  Score=205.74  Aligned_cols=163  Identities=32%  Similarity=0.593  Sum_probs=146.9

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEE-------------------------------
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR-------------------------------   51 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~-------------------------------   51 (205)
                      .+||+|+|++|+|||||+++|++..+...+.+|.+.++....+.+++..                               
T Consensus         7 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (208)
T 3clv_A            7 SYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNY   86 (208)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------CC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccc
Confidence            4899999999999999999999999888889999988888888877655                               


Q ss_pred             ------EEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC
Q 028686           52 ------IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR  125 (205)
Q Consensus        52 ------~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~  125 (205)
                            +.+.+||+||++.+..++..+++.+|++++|||+++++++..+..|+..+.....  .|+++|+||+|+  ...
T Consensus        87 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D~--~~~  162 (208)
T 3clv_A           87 NENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKIDK--NKF  162 (208)
T ss_dssp             CTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTTC--C-C
T ss_pred             cCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCCc--ccc
Confidence                  8899999999999999999999999999999999999999999999999987653  999999999993  245


Q ss_pred             ccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHHHHHHHh
Q 028686          126 AVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL  169 (205)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  169 (205)
                      .+..+++..++...+++++++||+++.|++++|++|.+.+.++.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  206 (208)
T 3clv_A          163 QVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI  206 (208)
T ss_dssp             CSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence            67789999999999999999999999999999999999987654

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=100.00  E-value=1.4e-33  Score=206.59  Aligned_cols=165  Identities=30%  Similarity=0.559  Sum_probs=146.0

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   80 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   80 (205)
                      |..+||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|+++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   81 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence            5679999999999999999999999988888888887554 456678889999999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCC-----------CccCHHHHHHHHHHhCC-cEEEEc
Q 028686           81 LVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETS  147 (205)
Q Consensus        81 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~S  147 (205)
                      +|||+++++++..+. .|+..+.... ++.|+++|+||+|+.+..           ..+..+++..++...+. +++++|
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  160 (186)
T 1mh1_A           82 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (186)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence            999999999999997 6998888765 479999999999996531           45677888899999886 999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHH
Q 028686          148 AKTNLNVEQVFFSIARDIKQ  167 (205)
Q Consensus       148 a~~~~gi~~~~~~i~~~~~~  167 (205)
                      |++|.|++++|+++.+.+.+
T Consensus       161 a~~g~gi~~l~~~l~~~~~~  180 (186)
T 1mh1_A          161 ALTQRGLKTVFDEAIRAVLC  180 (186)
T ss_dssp             TTTCTTHHHHHHHHHHHHSC
T ss_pred             CCCccCHHHHHHHHHHHHhc
Confidence            99999999999999998754

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=2e-33  Score=202.28  Aligned_cols=163  Identities=29%  Similarity=0.400  Sum_probs=122.9

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+++|++|||||||+++|.+.... ...++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   79 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence            579999999999999999999876653 3334444444 45667889999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  161 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i  161 (205)
                      ||++++++|+.+..|+..+.... ..++|+++|+||+|+.+ ...+..+++..++...+++++++||++|.|++++|+++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  158 (166)
T 3q72_A           80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR-SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV  158 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCS-SCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccc-ccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Confidence            99999999999999999987754 36799999999999975 46678889999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 028686          162 ARDIKQR  168 (205)
Q Consensus       162 ~~~~~~~  168 (205)
                      .+.+.++
T Consensus       159 ~~~~~~~  165 (166)
T 3q72_A          159 VRQIRLR  165 (166)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9998765

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=1.3e-33  Score=207.10  Aligned_cols=164  Identities=22%  Similarity=0.483  Sum_probs=144.8

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+++|++|||||||+++|.+..+...+.+|.+..+. ..+.+++..+.+.+||+||++.+..++..+++.+|++++
T Consensus         6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   84 (184)
T 1m7b_A            6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI   84 (184)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             eEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEE
Confidence            4689999999999999999999999988888888876653 566778888999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC-----------CCccCHHHHHHHHHHhC-CcEEEEcC
Q 028686           82 VYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYG-IKFFETSA  148 (205)
Q Consensus        82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~Sa  148 (205)
                      |||++++++|+.+ ..|+..+.... ++.|+++|+||+|+.+.           ...+..+++..+++.++ ++++++||
T Consensus        85 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  163 (184)
T 1m7b_A           85 CFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA  163 (184)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeee
Confidence            9999999999998 67999887765 57999999999999642           24577888999999888 79999999


Q ss_pred             C-CCCCHHHHHHHHHHHHHH
Q 028686          149 K-TNLNVEQVFFSIARDIKQ  167 (205)
Q Consensus       149 ~-~~~gi~~~~~~i~~~~~~  167 (205)
                      + ++.|++++|+++.+.+.+
T Consensus       164 ~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          164 LQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             TTBHHHHHHHHHHHHHHHHT
T ss_pred             cCCCcCHHHHHHHHHHHHhc
Confidence            9 689999999999998764

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=100.00  E-value=8.6e-33  Score=198.33  Aligned_cols=164  Identities=36%  Similarity=0.602  Sum_probs=146.0

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   80 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   80 (205)
                      |..++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++++..++..++..+|+++
T Consensus         1 m~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   79 (166)
T 2ce2_X            1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   79 (166)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEE
Confidence            7789999999999999999999999988777777776443 566778888899999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHH
Q 028686           81 LVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF  159 (205)
Q Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  159 (205)
                      +|||+++++++..+..|+..+..... .+.|+++|+||+|+.+  ..+..+++.++++.++++++++||+++.|++++|+
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  157 (166)
T 2ce2_X           80 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA--RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY  157 (166)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC--CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh--cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence            99999999999999999999877653 4799999999999965  45678889999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 028686          160 SIARDIKQ  167 (205)
Q Consensus       160 ~i~~~~~~  167 (205)
                      ++.+.+.+
T Consensus       158 ~l~~~~~~  165 (166)
T 2ce2_X          158 TLVREIRQ  165 (166)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            99988753

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.6e-33  Score=206.27  Aligned_cols=162  Identities=28%  Similarity=0.529  Sum_probs=144.4

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .++|+++|++|+|||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.+||+||++++..++..+++++|++++|
T Consensus        18 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   96 (194)
T 2atx_A           18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLIC   96 (194)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEE
Confidence            48999999999999999999999998888888887555 45667788889999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCC-----------CccCHHHHHHHHHHhCC-cEEEEcCC
Q 028686           83 YDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETSAK  149 (205)
Q Consensus        83 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~  149 (205)
                      ||++++++|..+. .|+..+.... +++|+++|+||+|+.+..           ..+..+++..++..+++ +++++||+
T Consensus        97 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  175 (194)
T 2atx_A           97 FSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSAL  175 (194)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTT
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCC
Confidence            9999999999997 7999988765 479999999999997531           35778889999999997 99999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 028686          150 TNLNVEQVFFSIARDIK  166 (205)
Q Consensus       150 ~~~gi~~~~~~i~~~~~  166 (205)
                      +|.|++++|++|.+.+.
T Consensus       176 ~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          176 TQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             TCTTHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHh
Confidence            99999999999998875

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=100.00  E-value=1.3e-32  Score=202.61  Aligned_cols=167  Identities=36%  Similarity=0.587  Sum_probs=137.7

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   80 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   80 (205)
                      |..++|+++|.+|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|+++
T Consensus        19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   97 (190)
T 3con_A           19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   97 (190)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred             cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence            5679999999999999999999999988777777776444 466778888899999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHH
Q 028686           81 LVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF  159 (205)
Q Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  159 (205)
                      +|||+++++++..+..|+..+..... .++|+++|+||+|+.+  ..+..++++++++..+++++++||+++.|++++|+
T Consensus        98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  175 (190)
T 3con_A           98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT--RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFY  175 (190)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC--CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc--ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999877653 5799999999999965  45678889999999999999999999999999999


Q ss_pred             HHHHHHHHHhc
Q 028686          160 SIARDIKQRLA  170 (205)
Q Consensus       160 ~i~~~~~~~~~  170 (205)
                      +|.+.+.+.+.
T Consensus       176 ~l~~~~~~~~~  186 (190)
T 3con_A          176 TLVREIRQYRM  186 (190)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHHHH
Confidence            99999876543

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.2e-33  Score=208.91  Aligned_cols=165  Identities=27%  Similarity=0.400  Sum_probs=139.2

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCC--CCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh-hhhhhhhhccCCcEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGS--FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRTITTAYYRGAMGI   79 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~d~~   79 (205)
                      .+||+|+|++|||||||+++|++..  +... .++++.+++...+.+++..+.+.+|||+|.+. +..+...+++.++++
T Consensus        37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~  115 (211)
T 2g3y_A           37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY  115 (211)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEE
Confidence            4899999999999999999999754  3333 34566677778888999999999999999876 566777888999999


Q ss_pred             EEEEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHH
Q 028686           80 LLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF  158 (205)
Q Consensus        80 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  158 (205)
                      |+|||++++++|+.+..|+..+.... ..++|+++|+||+||.+ ...+..++.+.++..++++++++||++|.||+++|
T Consensus       116 ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~-~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf  194 (211)
T 2g3y_A          116 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR-CREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF  194 (211)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhc-CceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999998887643 25799999999999965 45577788888899999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 028686          159 FSIARDIKQRL  169 (205)
Q Consensus       159 ~~i~~~~~~~~  169 (205)
                      +++.+.+....
T Consensus       195 ~~l~~~i~~~~  205 (211)
T 2g3y_A          195 EGIVRQVRLRR  205 (211)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhc
Confidence            99999886543

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=2.7e-33  Score=209.19  Aligned_cols=164  Identities=22%  Similarity=0.482  Sum_probs=145.0

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+|+|++|||||||+++|.+..+...+.+|.+.++ ...+.+++..+.+.+||++|++.+..++..+++.+|++|+
T Consensus        27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il  105 (205)
T 1gwn_A           27 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI  105 (205)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence            358999999999999999999999998888888888666 4566778888999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC-----------CCccCHHHHHHHHHHhC-CcEEEEcC
Q 028686           82 VYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYG-IKFFETSA  148 (205)
Q Consensus        82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~Sa  148 (205)
                      |||++++++|+.+ ..|+..+.... ++.|+++|+||+|+.+.           ...+..++++.+++.++ ++++++||
T Consensus       106 v~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA  184 (205)
T 1gwn_A          106 CFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA  184 (205)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeee
Confidence            9999999999999 67999887765 57999999999999642           24577888999999888 79999999


Q ss_pred             C-CCCCHHHHHHHHHHHHHH
Q 028686          149 K-TNLNVEQVFFSIARDIKQ  167 (205)
Q Consensus       149 ~-~~~gi~~~~~~i~~~~~~  167 (205)
                      + ++.|++++|+++++.+.+
T Consensus       185 k~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          185 LQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             TTCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCcCHHHHHHHHHHHHhh
Confidence            9 689999999999998875

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=100.00  E-value=4.7e-33  Score=209.08  Aligned_cols=166  Identities=32%  Similarity=0.574  Sum_probs=125.8

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+++|++|||||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.+||+||++.+..++..+++++|++++
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~  111 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL  111 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence            458999999999999999999999988777778776444 4567788889999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCC-----------CccCHHHHHHHHHHhCC-cEEEEcC
Q 028686           82 VYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETSA  148 (205)
Q Consensus        82 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa  148 (205)
                      |||++++++|+.+. .|+..+.... +++|+++|+||+|+.+..           ..+..+++..+++..++ +++++||
T Consensus       112 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA  190 (214)
T 2j1l_A          112 CFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSA  190 (214)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBT
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecC
Confidence            99999999999997 6999987765 579999999999996532           25677888999999997 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHh
Q 028686          149 KTNLNVEQVFFSIARDIKQRL  169 (205)
Q Consensus       149 ~~~~gi~~~~~~i~~~~~~~~  169 (205)
                      ++|.|++++|++|.+.+.+..
T Consensus       191 ~~g~gi~el~~~l~~~~~~~~  211 (214)
T 2j1l_A          191 RLHDNVHAVFQEAAEVALSSR  211 (214)
T ss_dssp             TTTBSHHHHHHHHHHHHHHC-
T ss_pred             CCCCCHHHHHHHHHHHHHHhh
Confidence            999999999999999987654

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.2e-32  Score=205.76  Aligned_cols=166  Identities=33%  Similarity=0.577  Sum_probs=139.4

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   80 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   80 (205)
                      |..+||+++|.+|||||||+++|++..+...+.++.+..+.. .+.+++..+.+.+||+||++++..++..+++++|+++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            356899999999999999999999999888888888766653 4678888899999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCCC-----------CccCHHHHHHHHHHhCC-cEEEEc
Q 028686           81 LVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETS  147 (205)
Q Consensus        81 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~S  147 (205)
                      +|||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+..           ..+..++...++...+. +++++|
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS  180 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence            99999999999999 56888887754 579999999999996531           34677888889988887 899999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHH
Q 028686          148 AKTNLNVEQVFFSIARDIKQR  168 (205)
Q Consensus       148 a~~~~gi~~~~~~i~~~~~~~  168 (205)
                      |++|.|++++|++|.+.+...
T Consensus       181 A~~g~gi~el~~~l~~~i~~~  201 (207)
T 2fv8_A          181 AKTKEGVREVFETATRAALQK  201 (207)
T ss_dssp             TTTCTTHHHHHHHHHHHHHSC
T ss_pred             CCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999988643

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=1.6e-32  Score=204.16  Aligned_cols=163  Identities=31%  Similarity=0.565  Sum_probs=143.9

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+++|.+|||||||+++|.+..+...+.++.+.++. ..+.+++..+.+.+||+||++.+..++..+++++|++++
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~  102 (201)
T 2gco_A           24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM  102 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence            4589999999999999999999999988888888876665 346788888999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCCC-----------CccCHHHHHHHHHHhCC-cEEEEcC
Q 028686           82 VYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETSA  148 (205)
Q Consensus        82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa  148 (205)
                      |||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+..           ..+..+++..++...+. +++++||
T Consensus       103 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA  181 (201)
T 2gco_A          103 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSA  181 (201)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeC
Confidence            9999999999999 57888887755 579999999999996531           34677888999999887 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q 028686          149 KTNLNVEQVFFSIARDIK  166 (205)
Q Consensus       149 ~~~~gi~~~~~~i~~~~~  166 (205)
                      ++|.|++++|++|.+.+.
T Consensus       182 ~~g~gi~~l~~~i~~~~l  199 (201)
T 2gco_A          182 KTKEGVREVFEMATRAGL  199 (201)
T ss_dssp             TTCTTHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHh
Confidence            999999999999998875

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=9.5e-33  Score=199.49  Aligned_cols=163  Identities=33%  Similarity=0.485  Sum_probs=142.3

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+++|++|+|||||+++|.++.+...+.++.+..+. ..+..++..+.+.+||+||++++..++..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            3589999999999999999999999887777787775543 556778888899999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF  159 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  159 (205)
                      |||++++++++.+..|+..+.....  ++.|+++|+||+|+.+ ...+..++...++...+++++++||++|.|++++|+
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  159 (172)
T 2erx_A           81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP-SREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQ  159 (172)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccc-ccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHH
Confidence            9999999999999999988876542  4799999999999965 355677888889999999999999999999999999


Q ss_pred             HHHHHHH
Q 028686          160 SIARDIK  166 (205)
Q Consensus       160 ~i~~~~~  166 (205)
                      +|.+.+.
T Consensus       160 ~l~~~~~  166 (172)
T 2erx_A          160 ELLNLEK  166 (172)
T ss_dssp             HHHHTCC
T ss_pred             HHHHHHh
Confidence            9987654

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=100.00  E-value=8.2e-33  Score=207.98  Aligned_cols=170  Identities=29%  Similarity=0.475  Sum_probs=148.1

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEEC-CEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   80 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   80 (205)
                      ..+||+|+|.+|||||||+++|+++.+...+.++.+..+....+... +..+.+.+||+||++.+..++..++..+|++|
T Consensus        10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (218)
T 4djt_A           10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAI   89 (218)
T ss_dssp             CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEE
Confidence            46899999999999999999999998888888888877776666554 44488999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686           81 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  160 (205)
Q Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  160 (205)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+.+ ...+..+++..++...+++++++||++|.|++++|++
T Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~  168 (218)
T 4djt_A           90 LFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN-RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLH  168 (218)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC-----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-ccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Confidence            999999999999999999999888767799999999999965 4567788888899889999999999999999999999


Q ss_pred             HHHHHHHHhccc
Q 028686          161 IARDIKQRLADT  172 (205)
Q Consensus       161 i~~~~~~~~~~~  172 (205)
                      |.+.+.+.....
T Consensus       169 l~~~~~~~~~~~  180 (218)
T 4djt_A          169 LARIFTGRPDLI  180 (218)
T ss_dssp             HHHHHHCCTTCC
T ss_pred             HHHHHhcccccc
Confidence            999987765443

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=100.00  E-value=7.2e-32  Score=199.45  Aligned_cols=166  Identities=27%  Similarity=0.404  Sum_probs=137.1

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCC--CCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh-hhhhhhhhccCCcE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGS--FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRTITTAYYRGAMG   78 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~d~   78 (205)
                      ..+||+++|++|||||||+++|++..  +...+ ++++.+++...+.+++..+.+.+||++|.+. +..+...+++.+|+
T Consensus         5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~   83 (192)
T 2cjw_A            5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA   83 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence            46899999999999999999999643  33333 4466677777888999999999999999875 55677788889999


Q ss_pred             EEEEEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHH
Q 028686           79 ILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV  157 (205)
Q Consensus        79 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  157 (205)
                      +++|||+++++||+.+..|+..+.... ..++|+++|+||+|+.. ...+..++...++..++++++++||++|.||+++
T Consensus        84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~-~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l  162 (192)
T 2cjw_A           84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR-XREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL  162 (192)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhc-cccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence            999999999999999999998887653 35799999999999964 4556778888888888999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 028686          158 FFSIARDIKQRL  169 (205)
Q Consensus       158 ~~~i~~~~~~~~  169 (205)
                      |+++.+.+....
T Consensus       163 f~~l~~~~~~~~  174 (192)
T 2cjw_A          163 FEGIVRQVRLRR  174 (192)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhc
Confidence            999999886544

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=100.00  E-value=2.5e-33  Score=204.67  Aligned_cols=163  Identities=31%  Similarity=0.617  Sum_probs=127.1

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+++|++|+|||||+++|.++.+...+.+|.+..+. ..+.+++..+.+.+||+||++++..++..+++++|++++
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   85 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   85 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence            4689999999999999999999999887777787764443 334456677888999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCCC---------ccCHHHHHHHHHHhCC-cEEEEcCCC
Q 028686           82 VYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKR---------AVPTSKGQALADEYGI-KFFETSAKT  150 (205)
Q Consensus        82 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~-~~~~~Sa~~  150 (205)
                      |||++++++++.+. .|+..+.... ++.|+++|+||+|+.+...         .+..+++..++...+. +++++||++
T Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  164 (182)
T 3bwd_D           86 AFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKS  164 (182)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCC
Confidence            99999999999997 6999888765 4799999999999865321         2467888999999996 999999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 028686          151 NLNVEQVFFSIARDIK  166 (205)
Q Consensus       151 ~~gi~~~~~~i~~~~~  166 (205)
                      |.|++++|+++.+.+.
T Consensus       165 ~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          165 QENVKGVFDAAIRVVL  180 (182)
T ss_dssp             CTTHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999998764

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=100.00  E-value=5.1e-33  Score=205.42  Aligned_cols=164  Identities=24%  Similarity=0.319  Sum_probs=138.1

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCC-----------cccceeeEEEEEEE-EECCEEEEEEEEeCCChhhhhhhhh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTS-----------FITTIGIDFKIRTI-ELDGKRIKLQIWDTAGQERFRTITT   70 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~-----------~~~t~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~~~~~~   70 (205)
                      .+||+|+|++|||||||++.+.+. +...           +.+|.+.++....+ .+++..+.+.+|||||++++..++.
T Consensus        14 ~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   92 (198)
T 3t1o_A           14 NFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRK   92 (198)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHH
Confidence            589999999999999999766554 3333           34566666665555 6677889999999999999999999


Q ss_pred             hhccCCcEEEEEEeCC------ChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC-cE
Q 028686           71 AYYRGAMGILLVYDVT------DESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KF  143 (205)
Q Consensus        71 ~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~  143 (205)
                      .+++++|++|+|||++      +.++|..+..|+..+.. ...++|+++|+||+|+.+   .+..+++.+++...++ ++
T Consensus        93 ~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~  168 (198)
T 3t1o_A           93 LILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRDLPD---ALPVEMVRAVVDPEGKFPV  168 (198)
T ss_dssp             HHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTTSTT---CCCHHHHHHHHCTTCCSCE
T ss_pred             HHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchhccc---ccCHHHHHHHHHhcCCceE
Confidence            9999999999999999      66788888888888743 336799999999999954   3778899999999998 99


Q ss_pred             EEEcCCCCCCHHHHHHHHHHHHHHHhcc
Q 028686          144 FETSAKTNLNVEQVFFSIARDIKQRLAD  171 (205)
Q Consensus       144 ~~~Sa~~~~gi~~~~~~i~~~~~~~~~~  171 (205)
                      +++||++|.|++++|++|.+.+.++.+.
T Consensus       169 ~~~Sa~~~~gv~~l~~~l~~~i~~~~~~  196 (198)
T 3t1o_A          169 LEAVATEGKGVFETLKEVSRLVLARVAG  196 (198)
T ss_dssp             EECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred             EEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999887654

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=100.00  E-value=3.3e-32  Score=203.04  Aligned_cols=162  Identities=30%  Similarity=0.572  Sum_probs=140.4

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+++|.+|||||||+++|+++.+...+.++.+ +.....+.+++..+.+.+||+||++.+..++..+++.+|++++
T Consensus        29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~  107 (204)
T 4gzl_A           29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  107 (204)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            468999999999999999999999998888888776 4455677788888999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCC-----------CccCHHHHHHHHHHhCC-cEEEEcC
Q 028686           82 VYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETSA  148 (205)
Q Consensus        82 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa  148 (205)
                      |||++++++|+.+. .|+..+.... ++.|+++|+||+|+.+..           ..+..+++..+++..+. +++++||
T Consensus       108 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA  186 (204)
T 4gzl_A          108 CFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  186 (204)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeC
Confidence            99999999999997 7998888776 679999999999986532           23677888899999885 6999999


Q ss_pred             CCCCCHHHHHHHHHHHH
Q 028686          149 KTNLNVEQVFFSIARDI  165 (205)
Q Consensus       149 ~~~~gi~~~~~~i~~~~  165 (205)
                      ++|.|++++|+++.+.+
T Consensus       187 ~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          187 LTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             TTCTTHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            99999999999998754

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=100.00  E-value=7.1e-35  Score=216.50  Aligned_cols=164  Identities=60%  Similarity=1.017  Sum_probs=140.2

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+|+|.+|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++++|++|+|
T Consensus        33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v  112 (199)
T 3l0i_B           33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV  112 (199)
T ss_dssp             EEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEEC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEE
Confidence            58999999999999999999999988888888888888888899999999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||++++++|+.+..|+..+......++|+++|+||+|+.+ ...+..+++..++..++++++++||+++.|++++|++|.
T Consensus       113 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~  191 (199)
T 3l0i_B          113 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT-KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA  191 (199)
T ss_dssp             C-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC---CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHT
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCc-cccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999999999877666899999999999965 455666778889999999999999999999999999998


Q ss_pred             HHHHH
Q 028686          163 RDIKQ  167 (205)
Q Consensus       163 ~~~~~  167 (205)
                      +.+.+
T Consensus       192 ~~l~~  196 (199)
T 3l0i_B          192 AEIKK  196 (199)
T ss_dssp             TTTTT
T ss_pred             HHHHH
Confidence            77643

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=100.00  E-value=8e-33  Score=208.61  Aligned_cols=165  Identities=29%  Similarity=0.589  Sum_probs=147.8

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+|+|.+|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++++|++++
T Consensus        14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   93 (221)
T 3gj0_A           14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII   93 (221)
T ss_dssp             CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEE
Confidence            46899999999999999999988888777888899888988888999999999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  161 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i  161 (205)
                      |||++++++|..+..|+..+.... +++|+++|+||+|+.+..  + ..+...++...+++++++||++|.|++++|++|
T Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~--~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  169 (221)
T 3gj0_A           94 MFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRK--V-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL  169 (221)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCS--S-CGGGCCHHHHHTCEEEECBGGGTBTTTHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCcccccc--c-cHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            999999999999999999998875 579999999999996532  2 235667788889999999999999999999999


Q ss_pred             HHHHHHHhc
Q 028686          162 ARDIKQRLA  170 (205)
Q Consensus       162 ~~~~~~~~~  170 (205)
                      .+.+.....
T Consensus       170 ~~~l~~~~~  178 (221)
T 3gj0_A          170 ARKLIGDPN  178 (221)
T ss_dssp             HHHHHTCTT
T ss_pred             HHHHHhCcc
Confidence            999876543

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=100.00  E-value=9.3e-31  Score=194.33  Aligned_cols=169  Identities=44%  Similarity=0.784  Sum_probs=149.1

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .++|+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.++.++..++..++++++|
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v   84 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLV   84 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEE
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEE
Confidence            48999999999999999999999998888888888888888899999999999999999999998889999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||+++..+++++..|+..+......+.|+++++||.|+.+ ...+..++++.++...++.++++||+++.|++++|+++.
T Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~-~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~  163 (199)
T 2f9l_A           85 YDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH-LRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL  163 (199)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc-ccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999999999888766556789999999999965 345667888999999999999999999999999999999


Q ss_pred             HHHHHHhccc
Q 028686          163 RDIKQRLADT  172 (205)
Q Consensus       163 ~~~~~~~~~~  172 (205)
                      +.+.+.....
T Consensus       164 ~~~~~~~~~~  173 (199)
T 2f9l_A          164 TEIYRIVSQK  173 (199)
T ss_dssp             HHHHHHHHTS
T ss_pred             HHHHHHHhhc
Confidence            9998765443

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.98  E-value=4e-31  Score=195.74  Aligned_cols=163  Identities=17%  Similarity=0.300  Sum_probs=130.3

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCC-CcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   80 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   80 (205)
                      ...+|+|+|.+|||||||+++|++..+.. .+.+|.+..+  ..+...  .+.+.+||+||++.+..++..+++++|++|
T Consensus        16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   91 (199)
T 4bas_A           16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFEKG--RVAFTVFDMGGAKKFRGLWETYYDNIDAVI   91 (199)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEEeC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEE
Confidence            35799999999999999999999999887 7788888443  334443  478999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHhhcC--------CCCcEEEEEeCCCCCCCCCccCHHHHHHH------HHHhCCcEEEE
Q 028686           81 LVYDVTDESSFNNIRNWIRNIEQHAS--------DNVNKVLVGNKADMDESKRAVPTSKGQAL------ADEYGIKFFET  146 (205)
Q Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~--------~~~piiiv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~~  146 (205)
                      +|||++++++|..+..|+..+.....        .++|+++|+||+|+.+..   ..+++...      +...+++++++
T Consensus        92 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  168 (199)
T 4bas_A           92 FVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK---TAAELVEILDLTTLMGDHPFVIFAS  168 (199)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC---CHHHHHHHHTHHHHHTTSCEEEEEC
T ss_pred             EEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC---CHHHHHHHhcchhhccCCeeEEEEe
Confidence            99999999999999999888865421        279999999999996532   22222221      14456899999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHhcc
Q 028686          147 SAKTNLNVEQVFFSIARDIKQRLAD  171 (205)
Q Consensus       147 Sa~~~~gi~~~~~~i~~~~~~~~~~  171 (205)
                      ||+++.|++++|++|.+.+.+....
T Consensus       169 Sa~~g~gv~~l~~~l~~~~~~~~~~  193 (199)
T 4bas_A          169 NGLKGTGVHEGFSWLQETASRQSGK  193 (199)
T ss_dssp             BTTTTBTHHHHHHHHHHHHHHHC--
T ss_pred             eCCCccCHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999876543

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.97  E-value=9.6e-31  Score=192.68  Aligned_cols=159  Identities=18%  Similarity=0.317  Sum_probs=132.1

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCC-CCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGS-FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   80 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   80 (205)
                      ..+||+|+|.+|||||||+++|.+.. +...+.+|.+  +....+.+++  +.+.+||+||++.+..++..+++++|+++
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   95 (190)
T 2h57_A           20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAII   95 (190)
T ss_dssp             -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            46899999999999999999999887 5666777777  4445566665  67999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-----HhCCcEEEEcCCCCC
Q 028686           81 LVYDVTDESSFNNIRNWIRNIEQHAS---DNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNL  152 (205)
Q Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~  152 (205)
                      +|||++++++|..+..|+..+.....   .+.|+++|+||+|+.+   ....+++.++..     ..+++++++||+++.
T Consensus        96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  172 (190)
T 2h57_A           96 FVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD---AVTSVKVSQLLCLENIKDKPWHICASDAIKGE  172 (190)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT---CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTB
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc---CCCHHHHHHHhChhhccCCceEEEEccCCCCc
Confidence            99999999999999999988876543   4799999999999964   234566665553     235789999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 028686          153 NVEQVFFSIARDIKQ  167 (205)
Q Consensus       153 gi~~~~~~i~~~~~~  167 (205)
                      |++++|++|.+.+.+
T Consensus       173 gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          173 GLQEGVDWLQDQIQT  187 (190)
T ss_dssp             THHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999987754

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.97  E-value=1.8e-30  Score=190.43  Aligned_cols=159  Identities=21%  Similarity=0.343  Sum_probs=131.2

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..++|+++|++|||||||+++|.++. ...+.||.+..  ...+.+++  +.+.+||+||++++..++..+++++|++++
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIW   91 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            35899999999999999999999988 66777888743  44555554  779999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-----HhCCcEEEEcCCCCCCHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVE  155 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~  155 (205)
                      |||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.   ...+++.+...     ..+++++++||+++.|++
T Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (186)
T 1ksh_A           92 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA---LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL  168 (186)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC---CCHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence            999999999999999988886643 257999999999999652   23344433322     345789999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028686          156 QVFFSIARDIKQR  168 (205)
Q Consensus       156 ~~~~~i~~~~~~~  168 (205)
                      ++|+++.+.+.++
T Consensus       169 ~l~~~l~~~i~~~  181 (186)
T 1ksh_A          169 PGIDWLLDDISSR  181 (186)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988654

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.97  E-value=9.3e-31  Score=192.59  Aligned_cols=160  Identities=21%  Similarity=0.372  Sum_probs=130.2

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+|+|++|||||||+++|+++.+...+.+|.+.++..  +...  .+.+.+||+||++++..++..+++.+|++|+
T Consensus        21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   96 (188)
T 1zd9_A           21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIVY   96 (188)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence            46899999999999999999999999888888888866653  3444  4779999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-----HhCCcEEEEcCCCCCCHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVE  155 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~  155 (205)
                      |||++++++++.+..|+..+.... ..++|+++|+||+|+.+.   ...++..+...     ..+++++++||++|.|++
T Consensus        97 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~  173 (188)
T 1zd9_A           97 MVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA---LDEKELIEKMNLSAIQDREICCYSISCKEKDNID  173 (188)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC---CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC---CCHHHHHHHhChhhhccCCeeEEEEECCCCCCHH
Confidence            999999999999999988886542 257999999999999652   22233322211     234679999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028686          156 QVFFSIARDIKQR  168 (205)
Q Consensus       156 ~~~~~i~~~~~~~  168 (205)
                      ++|++|.+.+.++
T Consensus       174 ~l~~~l~~~~~~~  186 (188)
T 1zd9_A          174 ITLQWLIQHSKSR  186 (188)
T ss_dssp             HHHHHHHHTCC--
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999876543

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.97  E-value=4e-31  Score=191.03  Aligned_cols=157  Identities=21%  Similarity=0.365  Sum_probs=127.5

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .++|+++|++|+|||||+++|.++.+. .+.||.+..  ...+.+++  +.+.+||+||++.+..++..+++.+|++++|
T Consensus         7 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v   81 (171)
T 1upt_A            7 EMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFN--VETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYV   81 (171)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEE--EEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccc--eEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEEEE
Confidence            589999999999999999999998874 356676643  34555554  7799999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHH-----HHHhCCcEEEEcCCCCCCHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQAL-----ADEYGIKFFETSAKTNLNVEQ  156 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~  156 (205)
                      ||++++++|..+..|+..+.... ..+.|+++|+||+|+.+..   ..+++...     +...+++++++||++|.|+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  158 (171)
T 1upt_A           82 VDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM---TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDE  158 (171)
T ss_dssp             EETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC---CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC---CHHHHHHHhCchhccCCceEEEECcCCCCcCHHH
Confidence            99999999999998888876543 2579999999999996531   22333222     223456899999999999999


Q ss_pred             HHHHHHHHHHH
Q 028686          157 VFFSIARDIKQ  167 (205)
Q Consensus       157 ~~~~i~~~~~~  167 (205)
                      +|+++.+.+.+
T Consensus       159 l~~~l~~~i~~  169 (171)
T 1upt_A          159 AMEWLVETLKS  169 (171)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhh
Confidence            99999998764

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.97  E-value=1e-31  Score=192.99  Aligned_cols=156  Identities=19%  Similarity=0.348  Sum_probs=124.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      +||+++|++|||||||+++|+++.+.. +.||.+.  ....+...+  +.+.+||+||++.+..++..+++++|++++||
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF--NVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSC--CEEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCce--eEEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            589999999999999999999888754 4667763  333444443  77999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHH-----HHhCCcEEEEcCCCCCCHHHH
Q 028686           84 DVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETSAKTNLNVEQV  157 (205)
Q Consensus        84 d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~~  157 (205)
                      |++++++|+.+..|+..+.... .++.|+++|+||+|+.+.   ...+++....     ...+++++++||++|.|++++
T Consensus        76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  152 (164)
T 1r8s_A           76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA---MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEG  152 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC---CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHH
Confidence            9999999999999988886542 357999999999999642   2223332221     123467999999999999999


Q ss_pred             HHHHHHHHHH
Q 028686          158 FFSIARDIKQ  167 (205)
Q Consensus       158 ~~~i~~~~~~  167 (205)
                      |+++.+.+.+
T Consensus       153 ~~~l~~~i~~  162 (164)
T 1r8s_A          153 LDWLSNQLRN  162 (164)
T ss_dssp             HHHHHHHC--
T ss_pred             HHHHHHHHhh
Confidence            9999987754

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.97  E-value=3.4e-31  Score=196.68  Aligned_cols=155  Identities=17%  Similarity=0.260  Sum_probs=123.0

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..++|+++|++|||||||+++|.++.+. .+.+|.+..  ...+.+++  +.+.+|||||++.++.++..+++.+|++++
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   98 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence            3579999999999999999999988764 455666643  34566666  789999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHH-----------------hCCcE
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADE-----------------YGIKF  143 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~  143 (205)
                      |||++++++|+.+..|+..+.... ..++|+++|+||+|+.+   .+..+++.+++..                 .++++
T Consensus        99 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (198)
T 1f6b_A           99 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE---AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  175 (198)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT---CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc---cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence            999999999999999999887643 35799999999999954   4567777776652                 34689


Q ss_pred             EEEcCCCCCCHHHHHHHHHHH
Q 028686          144 FETSAKTNLNVEQVFFSIARD  164 (205)
Q Consensus       144 ~~~Sa~~~~gi~~~~~~i~~~  164 (205)
                      +++||++|.|++++|++|.+.
T Consensus       176 ~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          176 FMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             EECBTTTTBSHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            999999999999999999764

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.97  E-value=1e-30  Score=192.89  Aligned_cols=154  Identities=19%  Similarity=0.266  Sum_probs=129.1

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .++|+++|++|||||||+++|.++.+. .+.+|.+..  ...+.+++  +.+.+||+||++.++.++..+++.+|++++|
T Consensus        23 ~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   97 (190)
T 1m2o_B           23 HGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFL   97 (190)
T ss_dssp             -CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence            479999999999999999999998864 456677653  45566776  7899999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHH------------hCCcEEEEcCC
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADE------------YGIKFFETSAK  149 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa~  149 (205)
                      ||++++++|+.+..|+..+.... ..+.|+++|+||+|+.+   .+..+++.++...            .+++++++||+
T Consensus        98 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  174 (190)
T 1m2o_B           98 VDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN---AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVV  174 (190)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT---CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTT
T ss_pred             EECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC---CCCHHHHHHHhCCccccccccccccceEEEEEeECC
Confidence            99999999999999998887643 25799999999999964   4556666665442            34689999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 028686          150 TNLNVEQVFFSIARD  164 (205)
Q Consensus       150 ~~~gi~~~~~~i~~~  164 (205)
                      +|.|++++|++|.+.
T Consensus       175 ~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          175 MRNGYLEAFQWLSQY  189 (190)
T ss_dssp             TTBSHHHHHHHHHTT
T ss_pred             cCCCHHHHHHHHHhh
Confidence            999999999999753

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=1.1e-30  Score=191.90  Aligned_cols=160  Identities=21%  Similarity=0.292  Sum_probs=126.6

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..++|+++|.+|||||||+++|+++.+. .+.+|.+..  ...+.+++  +.+.+||+||++++..++..+++++|++++
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   89 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV   89 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            4689999999999999999999988876 556666633  34455555  789999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-----HhCCcEEEEcCCCCCCHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVE  155 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~  155 (205)
                      |||++++++|+.+..|+..+.... ..+.|+++|+||+|+.+   ....+++.+...     ..+++++++||++|.|++
T Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (187)
T 1zj6_A           90 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE---CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  166 (187)
T ss_dssp             EEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT---CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC---CCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence            999999999999999998887653 25799999999999964   233455544432     335789999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 028686          156 QVFFSIARDIKQRL  169 (205)
Q Consensus       156 ~~~~~i~~~~~~~~  169 (205)
                      ++|++|.+.+....
T Consensus       167 ~l~~~l~~~~~~~~  180 (187)
T 1zj6_A          167 QGLEWMMSRLKIRL  180 (187)
T ss_dssp             HHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999998875443

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.97  E-value=1.7e-31  Score=197.31  Aligned_cols=157  Identities=20%  Similarity=0.352  Sum_probs=121.1

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+++|++|||||||+++|+++.+. .+.||.+  +....+...+  +.+.+||+||++++..++..+++++|++++
T Consensus        28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~iil  102 (192)
T 2b6h_A           28 KQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLIF  102 (192)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            4689999999999999999999988765 3456666  3344555554  789999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHH-----HHhCCcEEEEcCCCCCCHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETSAKTNLNVE  155 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~  155 (205)
                      |||++++++|+.+..|+..+.... ..+.|+++|+||+|+.+.   ...+++....     ...+++++++||++|.|++
T Consensus       103 v~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~  179 (192)
T 2b6h_A          103 VVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA---MPVSELTDKLGLQHLRSRTWYVQATCATQGTGLY  179 (192)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred             EEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC---CCHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence            999999999999999998886543 257999999999999642   2223332221     1234679999999999999


Q ss_pred             HHHHHHHHHHH
Q 028686          156 QVFFSIARDIK  166 (205)
Q Consensus       156 ~~~~~i~~~~~  166 (205)
                      ++|++|.+.+.
T Consensus       180 ~l~~~l~~~i~  190 (192)
T 2b6h_A          180 DGLDWLSHELS  190 (192)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            99999998764

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.97  E-value=1.9e-30  Score=189.99  Aligned_cols=159  Identities=19%  Similarity=0.330  Sum_probs=125.6

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..++|+++|++|||||||+++|.+..+ ..+.||.+  +....+.+++  +.+.+||+||++.+..++..+++.+|++++
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g--~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~   89 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQG--FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILIY   89 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETT--EEEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCC--eEEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            358999999999999999999998764 34566666  3344556664  779999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHH-----HHhCCcEEEEcCCCCCCHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETSAKTNLNVE  155 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~  155 (205)
                      |||++++++|+.+..|+..+.... ..+.|+++|+||+|+.+..   ..+++....     ...+++++++||++|.|++
T Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (181)
T 1fzq_A           90 VIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA---PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ  166 (181)
T ss_dssp             EEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC---CHHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence            999999999999999888875542 3579999999999996531   233333221     1234679999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028686          156 QVFFSIARDIKQR  168 (205)
Q Consensus       156 ~~~~~i~~~~~~~  168 (205)
                      ++|+++.+.+.++
T Consensus       167 ~l~~~l~~~~~~~  179 (181)
T 1fzq_A          167 DGMNWVCKNVNAK  179 (181)
T ss_dssp             HHHHHHHHTC---
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999877543

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.97  E-value=2.5e-29  Score=185.63  Aligned_cols=162  Identities=46%  Similarity=0.820  Sum_probs=146.6

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .++|+|+|++|||||||+++|.+..+...+.+|.+.++....+.+++..+.+.+||++|.+++..++..+++.++++++|
T Consensus        29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v  108 (191)
T 1oix_A           29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLV  108 (191)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEE
Confidence            48999999999999999999999998888899999999888999999999999999999999888888899999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||+++..+|+++..|+..+......+.|+++++||.|+.+ ...+..++++.++...++.++++|++++.|++++|+++.
T Consensus       109 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~-~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~  187 (191)
T 1oix_A          109 YDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH-LRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL  187 (191)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999998999888766556789999999999965 345667888999999999999999999999999999998


Q ss_pred             HHH
Q 028686          163 RDI  165 (205)
Q Consensus       163 ~~~  165 (205)
                      +.+
T Consensus       188 ~~i  190 (191)
T 1oix_A          188 TEI  190 (191)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            765

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.97  E-value=1.5e-30  Score=190.36  Aligned_cols=155  Identities=20%  Similarity=0.266  Sum_probs=126.5

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+++|.+|||||||+++|+++.+ ..+.+|.+...  ..+.+++  +.+.+||+||++++..++..+++++|++++
T Consensus        20 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   94 (181)
T 2h17_A           20 QEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV   94 (181)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            468999999999999999999999887 55566666433  3455555  789999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-----HhCCcEEEEcCCCCCCHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVE  155 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~  155 (205)
                      |||++++++|+.+..|+..+.... ..+.|+++|+||+|+.+.   ...+++.+...     ..+++++++||++|.|++
T Consensus        95 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  171 (181)
T 2h17_A           95 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC---MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  171 (181)
T ss_dssp             EEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC---CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence            999999999999999888887643 357999999999999542   33444444332     234689999999999999


Q ss_pred             HHHHHHHHH
Q 028686          156 QVFFSIARD  164 (205)
Q Consensus       156 ~~~~~i~~~  164 (205)
                      ++|++|.+.
T Consensus       172 ~l~~~l~~~  180 (181)
T 2h17_A          172 QGLEWMMSR  180 (181)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHhh
Confidence            999999764

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.97  E-value=2e-29  Score=200.50  Aligned_cols=163  Identities=28%  Similarity=0.564  Sum_probs=144.5

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .++|+++|.+|+|||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus       155 ~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v  233 (332)
T 2wkq_A          155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC  233 (332)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEE
T ss_pred             eeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEE
Confidence            48999999999999999999999998888888887544 56678889999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC-----------CCccCHHHHHHHHHHhCC-cEEEEcCC
Q 028686           83 YDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETSAK  149 (205)
Q Consensus        83 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~  149 (205)
                      ||++++++|+.+. .|+..+.... .++|+++|+||+|+.+.           ...+..+++..++...++ +++++||+
T Consensus       234 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  312 (332)
T 2wkq_A          234 FSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  312 (332)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCC
Confidence            9999999999997 6888887765 37999999999998653           245778889999999997 99999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 028686          150 TNLNVEQVFFSIARDIKQ  167 (205)
Q Consensus       150 ~~~gi~~~~~~i~~~~~~  167 (205)
                      +|.|++++|++|.+.+..
T Consensus       313 ~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          313 TQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             TCTTHHHHHHHHHHHHHC
T ss_pred             CCcCHHHHHHHHHHHHhc
Confidence            999999999999988753

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.97  E-value=3.9e-31  Score=194.04  Aligned_cols=164  Identities=21%  Similarity=0.356  Sum_probs=124.3

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhC--CCCCCcccceeeEEEEEEEEE---CCEEEEEEEEeCCChhhhhhhhhhhccCCc
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDG--SFTTSFITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQERFRTITTAYYRGAM   77 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~--~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   77 (205)
                      .+||+++|++|||||||+++|++.  .+...+.+|.+.++....+.+   ++..+.+.+||++|++++..++..++++++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            479999999999999999999985  455667888888877666544   345678999999999999999999999999


Q ss_pred             EEEEEEeCCCh-hHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccC---HHHHHHHHHHhCCc----EEEEcCC
Q 028686           78 GILLVYDVTDE-SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP---TSKGQALADEYGIK----FFETSAK  149 (205)
Q Consensus        78 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa~  149 (205)
                      ++++|||++++ .+++.+..|+..+.... ++.|+++|+||+|+.+. ..+.   .+....++...+++    ++++||+
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDE-KQRKACMSKITKELLNKRGFPAIRDYHFVNAT  159 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCH-HHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccc-hhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence            99999999997 58999999999987654 46999999999999542 2211   23345566666776    9999999


Q ss_pred             CCC-CHHHHHHHHHHHHHHH
Q 028686          150 TNL-NVEQVFFSIARDIKQR  168 (205)
Q Consensus       150 ~~~-gi~~~~~~i~~~~~~~  168 (205)
                      ++. +++++++.+.+.+.+.
T Consensus       160 ~~~~~~~~l~~~i~~~~~~~  179 (184)
T 2zej_A          160 EESDALAKLRKTIINESLNF  179 (184)
T ss_dssp             SCCHHHHHHHHHHHHHHHCC
T ss_pred             cCchhHHHHHHHHHHHHhcc
Confidence            996 9999999998877553

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.97  E-value=1.9e-30  Score=189.60  Aligned_cols=160  Identities=21%  Similarity=0.322  Sum_probs=127.1

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..++|+++|++|||||||+++|.++.+ ..+.+|.+..  ...+.+++  +.+.+||+||++++..++..+++++|++++
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF   91 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            468999999999999999999998876 5556676633  34455555  789999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-----HhCCcEEEEcCCCCCCHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVE  155 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~  155 (205)
                      |||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.   ...+++.+...     ..+++++++||++|.|++
T Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (183)
T 1moz_A           92 VVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA---LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT  168 (183)
T ss_dssp             EEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC---CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC---CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence            999999999999999998887654 367999999999999642   33444444332     123579999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 028686          156 QVFFSIARDIKQRL  169 (205)
Q Consensus       156 ~~~~~i~~~~~~~~  169 (205)
                      ++|++|.+.+.+++
T Consensus       169 ~l~~~l~~~~~~~q  182 (183)
T 1moz_A          169 EGLDWLIDVIKEEQ  182 (183)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999987654

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.97  E-value=8.3e-31  Score=192.79  Aligned_cols=159  Identities=16%  Similarity=0.295  Sum_probs=127.5

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+++|++|||||||+++|.++.+.. +.||.+.  ....+.+++  +.+.+|||||++++..++..+++++|++++
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   95 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGV--NLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVIY   95 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTC--CEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCce--EEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence            46899999999999999999999887643 5566663  334455554  779999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHH-----HHHhCCcEEEEcCCCCCCHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQAL-----ADEYGIKFFETSAKTNLNVE  155 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~  155 (205)
                      |||+++++++..+..|+..+.... ..+.|+++|+||+|+.+..   ..+++...     +...+++++++||+++.|++
T Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  172 (189)
T 2x77_A           96 VVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA---SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV  172 (189)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC---CHHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence            999999999999998888876543 2579999999999996531   22333222     12234689999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028686          156 QVFFSIARDIKQR  168 (205)
Q Consensus       156 ~~~~~i~~~~~~~  168 (205)
                      ++|+++.+.+.++
T Consensus       173 ~l~~~l~~~i~~~  185 (189)
T 2x77_A          173 EGMDWLVERLREQ  185 (189)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988664

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.94  E-value=1.6e-32  Score=204.41  Aligned_cols=162  Identities=30%  Similarity=0.589  Sum_probs=138.2

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+++|.+|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||+||++++..++..+++++|++++
T Consensus        29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil  107 (204)
T 3th5_A           29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI  107 (204)
Confidence            358999999999999999999999888777777776444 4555677778889999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCC-----------CccCHHHHHHHHHHhCC-cEEEEcC
Q 028686           82 VYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETSA  148 (205)
Q Consensus        82 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa  148 (205)
                      |||++++++++.+. .|+..+.... +++|+++|+||+|+.+..           ..+..+++..+++..++ +++++||
T Consensus       108 v~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA  186 (204)
T 3th5_A          108 CFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  186 (204)
Confidence            99999999999997 7888887654 379999999999996532           14556777888888887 9999999


Q ss_pred             CCCCCHHHHHHHHHHHH
Q 028686          149 KTNLNVEQVFFSIARDI  165 (205)
Q Consensus       149 ~~~~gi~~~~~~i~~~~  165 (205)
                      ++|.|++++|++|.+.+
T Consensus       187 ~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          187 LTQRGLKTVFDEAIRAV  203 (204)
Confidence            99999999999998765

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.96  E-value=7.4e-30  Score=189.03  Aligned_cols=159  Identities=18%  Similarity=0.245  Sum_probs=122.6

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEE--EEEEC-CEEEEEEEEeCCChhhhhhhh---hhhccC
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIR--TIELD-GKRIKLQIWDTAGQERFRTIT---TAYYRG   75 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~--~~~~~-~~~~~~~i~D~~g~~~~~~~~---~~~~~~   75 (205)
                      ..+||+++|++|||||||++++.+.. ...  ++.+.++...  ...+. +..+.+.+||++|++++..+.   ..++++
T Consensus        19 ~~~ki~~vG~~~vGKTsLi~~l~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   95 (196)
T 3llu_A           19 SKPRILLMGLRRSGKSSIQKVVFHKM-SPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRG   95 (196)
T ss_dssp             -CCEEEEEESTTSSHHHHHHHHHSCC-CGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhcC-CCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccccc
Confidence            46899999999999999999887743 222  3333333322  22332 556789999999999987766   899999


Q ss_pred             CcEEEEEEeCCCh--hHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC------CCccCHHHHHHHHH----HhCCcE
Q 028686           76 AMGILLVYDVTDE--SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES------KRAVPTSKGQALAD----EYGIKF  143 (205)
Q Consensus        76 ~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~------~~~~~~~~~~~~~~----~~~~~~  143 (205)
                      +|++|+|||++++  +++..+..|+..+.... +++|+++|+||+|+.+.      ...+..++...++.    ..++++
T Consensus        96 ~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  174 (196)
T 3llu_A           96 TGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSF  174 (196)
T ss_dssp             CSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEE
T ss_pred             CCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcce
Confidence            9999999999997  77888888888775443 57999999999998642      12344555667777    667899


Q ss_pred             EEEcCCCCCCHHHHHHHHHHHH
Q 028686          144 FETSAKTNLNVEQVFFSIARDI  165 (205)
Q Consensus       144 ~~~Sa~~~~gi~~~~~~i~~~~  165 (205)
                      +++||++ .|++++|+.+++.+
T Consensus       175 ~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          175 YLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             EEECTTS-THHHHHHHHHHHHT
T ss_pred             EEEEech-hhHHHHHHHHHHHh
Confidence            9999999 99999999998864

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.96  E-value=4.6e-29  Score=179.92  Aligned_cols=155  Identities=18%  Similarity=0.177  Sum_probs=117.9

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh------hhhhhhcc
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR------TITTAYYR   74 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~   74 (205)
                      |..++|+++|++|||||||+++|.+..+.....++.+.+.....+.+++  ..+.+|||||++.+.      .+...+++
T Consensus         1 m~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~   78 (165)
T 2wji_A            1 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII   78 (165)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHh
Confidence            7789999999999999999999998876555555555455555566665  579999999988764      34455654


Q ss_pred             --CCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCC
Q 028686           75 --GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL  152 (205)
Q Consensus        75 --~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  152 (205)
                        ++|++++|+|+++.+.   ...|+..+..   .+.|+++|+||+|+... ..+. .+...++..++++++++||++|.
T Consensus        79 ~~~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~~~~SA~~~~  150 (165)
T 2wji_A           79 NEKPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKS-LGIE-IDVDKLEKILGVKVVPLSAAKKM  150 (165)
T ss_dssp             HHCCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHH-TTCC-CCHHHHHHHHTSCEEECBGGGTB
T ss_pred             cCCCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccc-cChh-hHHHHHHHHhCCCEEEEEcCCCC
Confidence              8999999999998654   3446666654   36899999999998542 2232 24677888889999999999999


Q ss_pred             CHHHHHHHHHHHH
Q 028686          153 NVEQVFFSIARDI  165 (205)
Q Consensus       153 gi~~~~~~i~~~~  165 (205)
                      |++++|+++.+.+
T Consensus       151 ~v~~l~~~l~~~~  163 (165)
T 2wji_A          151 GIEELKKAISIAV  163 (165)
T ss_dssp             SHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998764

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.96  E-value=3.2e-29  Score=187.79  Aligned_cols=160  Identities=16%  Similarity=0.231  Sum_probs=115.3

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCE-EEEEEEEeCCChhhhhh-hhhhhccCCcEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK-RIKLQIWDTAGQERFRT-ITTAYYRGAMGI   79 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-~~~~~~~~~d~~   79 (205)
                      ..+||+++|++|||||||+++|+++.+...+.++. .++..  +.+++. .+.+.+|||||++++.. ++..+++.+|++
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~   82 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT-DSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV   82 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS-CEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc-eeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence            46899999999999999999999998877765543 44443  555543 57899999999999987 888899999999


Q ss_pred             EEEEeCCChh-HHHHHHH-HHHHHHhh--cCCCCcEEEEEeCCCCCCCCCc-cCHHHHHH--------------------
Q 028686           80 LLVYDVTDES-SFNNIRN-WIRNIEQH--ASDNVNKVLVGNKADMDESKRA-VPTSKGQA--------------------  134 (205)
Q Consensus        80 i~v~d~~~~~-s~~~~~~-~~~~i~~~--~~~~~piiiv~nK~Dl~~~~~~-~~~~~~~~--------------------  134 (205)
                      ++|||+++.+ ++..+.. |...+...  ...++|+++|+||+|+.+.... ...+.+..                    
T Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~  162 (214)
T 2fh5_B           83 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSS  162 (214)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC----------
T ss_pred             EEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCc
Confidence            9999999854 4666655 44444332  2357999999999999653210 00111111                    


Q ss_pred             ------------HHH-Hh--CCcEEEEcCCCC------CCHHHHHHHHHHH
Q 028686          135 ------------LAD-EY--GIKFFETSAKTN------LNVEQVFFSIARD  164 (205)
Q Consensus       135 ------------~~~-~~--~~~~~~~Sa~~~------~gi~~~~~~i~~~  164 (205)
                                  |+. ..  +++|+++||++|      .||+++|++|.+.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          163 TAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             --CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             cccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                        111 11  567999999999      9999999999875

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.96  E-value=6e-30  Score=197.12  Aligned_cols=162  Identities=25%  Similarity=0.314  Sum_probs=122.1

Q ss_pred             cceEEEEECCC---------CCcHHHHHHHHHh---CCCCCCcccce-eeEEEEEE--------------EEECCEEEEE
Q 028686            2 LFLLRIYFERG---------GVGKSCLLLRFSD---GSFTTSFITTI-GIDFKIRT--------------IELDGKRIKL   54 (205)
Q Consensus         2 ~~i~i~v~G~~---------~~GKtsli~~l~~---~~~~~~~~~t~-~~~~~~~~--------------~~~~~~~~~~   54 (205)
                      ..+||+|+|++         |||||||+++|++   ..+...+.+|+ +.++....              ..+++..+.+
T Consensus        18 ~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l   97 (255)
T 3c5h_A           18 GTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKM   97 (255)
T ss_dssp             SCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------CE
T ss_pred             ceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEEE
Confidence            46899999999         9999999999999   55655666654 33322211              1245677899


Q ss_pred             EEEe-----------------------CCChhhhhhhhhhhcc---------------------CCcEEEEEEeCCCh--
Q 028686           55 QIWD-----------------------TAGQERFRTITTAYYR---------------------GAMGILLVYDVTDE--   88 (205)
Q Consensus        55 ~i~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~~--   88 (205)
                      .+||                       ++|++++..++..+++                     ++|++|+|||++++  
T Consensus        98 ~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~  177 (255)
T 3c5h_A           98 HIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMN  177 (255)
T ss_dssp             EEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC---
T ss_pred             EEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCch
Confidence            9999                       6667777777777777                     79999999999998  


Q ss_pred             hHHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHH-hCCcEEEEcCCCCCCHHHHHHHHHHHHH
Q 028686           89 SSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALADE-YGIKFFETSAKTNLNVEQVFFSIARDIK  166 (205)
Q Consensus        89 ~s~~~~~~~~~~i~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~~~~~i~~~~~  166 (205)
                      ++|+.+..|+..+... ...++|+++|+||+|+.+ ...+  +++..++.. .+++++++||+++.|++++|++|.+.+.
T Consensus       178 ~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~-~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l~  254 (255)
T 3c5h_A          178 RNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGV-ERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLID  254 (255)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBC-HHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccc-cHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            9999999999998765 335799999999999954 2222  567777766 4789999999999999999999988763

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.96  E-value=1.9e-28  Score=178.08  Aligned_cols=157  Identities=21%  Similarity=0.190  Sum_probs=122.0

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..++|+++|++|||||||+++|.+..+...+.++.+.++....+.+++.  .+.+|||||++.+..++..++..+|++++
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   84 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVIL   84 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEEE
Confidence            3589999999999999999999999887776666665666666677774  57899999999999999999999999999


Q ss_pred             EEeCCC---hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHh-------C--CcEEEEcCC
Q 028686           82 VYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-------G--IKFFETSAK  149 (205)
Q Consensus        82 v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~  149 (205)
                      |||+++   .++++.+    ..+   ...++|+++|+||+|+.+.    ..++........       +  ++++++||+
T Consensus        85 v~d~~~~~~~~~~~~l----~~~---~~~~~p~ilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  153 (178)
T 2lkc_A           85 VVAADDGVMPQTVEAI----NHA---KAANVPIIVAINKMDKPEA----NPDRVMQELMEYNLVPEEWGGDTIFCKLSAK  153 (178)
T ss_dssp             EEETTCCCCHHHHHHH----HHH---GGGSCCEEEEEETTTSSCS----CHHHHHHHHTTTTCCBTTTTSSEEEEECCSS
T ss_pred             EEECCCCCcHHHHHHH----HHH---HhCCCCEEEEEECccCCcC----CHHHHHHHHHhcCcChhHcCCcccEEEEecC
Confidence            999988   4444333    222   2246899999999999652    223333333322       2  589999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhcc
Q 028686          150 TNLNVEQVFFSIARDIKQRLAD  171 (205)
Q Consensus       150 ~~~gi~~~~~~i~~~~~~~~~~  171 (205)
                      +|.|++++|++|.+.+.....+
T Consensus       154 ~~~gv~~l~~~l~~~~~~~~~~  175 (178)
T 2lkc_A          154 TKEGLDHLLEMILLVSEMEELK  175 (178)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTTT
T ss_pred             CCCCHHHHHHHHHHhhhhhccc
Confidence            9999999999999988765443

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.95  E-value=3.6e-29  Score=199.29  Aligned_cols=158  Identities=18%  Similarity=0.331  Sum_probs=120.5

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+|+|.+|+|||||+++|.+..+... .||.+..+.  .+...+  +.+.+|||||++.+..++..+++.+|++|+
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~--~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil  238 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF  238 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEE--EEEETT--EEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEE--EEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            357999999999999999999998886543 356664443  344444  789999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-----HhCCcEEEEcCCCCCCHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVE  155 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~  155 (205)
                      |||++++++|..+..|+..+.... .+++|++||+||+|+.+..   ..+++.....     ..+++++++||++|.||+
T Consensus       239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~  315 (329)
T 3o47_A          239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSLRHRNWYIQATCATSGDGLY  315 (329)
T ss_dssp             EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC---CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred             EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc---CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHH
Confidence            999999999999988777775543 3579999999999996532   2233322221     224579999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028686          156 QVFFSIARDIKQ  167 (205)
Q Consensus       156 ~~~~~i~~~~~~  167 (205)
                      ++|++|.+.+.+
T Consensus       316 el~~~l~~~l~~  327 (329)
T 3o47_A          316 EGLDWLSNQLRN  327 (329)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHh
Confidence            999999988754

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.95  E-value=1.8e-27  Score=180.18  Aligned_cols=165  Identities=22%  Similarity=0.176  Sum_probs=118.1

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCCh------hh----hhhhhhh
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ------ER----FRTITTA   71 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~------~~----~~~~~~~   71 (205)
                      ..++|+|+|.+|||||||+++|++..+.....+....+.....+..++  ..+.+|||||+      +.    +.. +..
T Consensus        28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~-~~~  104 (228)
T 2qu8_A           28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTT-ITA  104 (228)
T ss_dssp             TSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHH-HHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHH-HHH
Confidence            358999999999999999999999876433223222233333444444  67999999998      32    222 234


Q ss_pred             hccCCcEEEEEEeCCChhHHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHH---HHHHHHHHhC--CcEE
Q 028686           72 YYRGAMGILLVYDVTDESSFN--NIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS---KGQALADEYG--IKFF  144 (205)
Q Consensus        72 ~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~---~~~~~~~~~~--~~~~  144 (205)
                      ++..+|++++|||++++.+|.  ....|+..+.... ++.|+++|+||+|+.+. ..+..+   ....++...+  ++++
T Consensus       105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  182 (228)
T 2qu8_A          105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNM-DSLSIDNKLLIKQILDNVKNPIKFS  182 (228)
T ss_dssp             HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC---CCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred             hhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCc-hhhHHHHHHHHHHHHHhcCCCceEE
Confidence            567899999999999988765  2234666665432 47999999999999653 334433   4566777776  8999


Q ss_pred             EEcCCCCCCHHHHHHHHHHHHHHHhcc
Q 028686          145 ETSAKTNLNVEQVFFSIARDIKQRLAD  171 (205)
Q Consensus       145 ~~Sa~~~~gi~~~~~~i~~~~~~~~~~  171 (205)
                      ++||++|.|++++|++|.+.+.+.+..
T Consensus       183 ~~SA~~g~gi~~l~~~l~~~i~~~~~~  209 (228)
T 2qu8_A          183 SFSTLTGVGVEQAKITACELLKNDQAE  209 (228)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             EEecccCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999776543

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.95  E-value=4.1e-28  Score=178.09  Aligned_cols=157  Identities=23%  Similarity=0.283  Sum_probs=121.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCC-----------hhhhhhhhhhh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG-----------QERFRTITTAY   72 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~~   72 (205)
                      +||+++|++|||||||+++|++..+...+.++.+...  ..+.+.    .+.+||+||           ++.+..++..+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            6899999999999999999999987766666554322  223333    589999999           67788888888


Q ss_pred             ccC-CcEEEEEEeCCChhHHHHH-HHHHHH--------H-HhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC
Q 028686           73 YRG-AMGILLVYDVTDESSFNNI-RNWIRN--------I-EQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI  141 (205)
Q Consensus        73 ~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~--------i-~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  141 (205)
                      ++. ++++++||++.+..++..+ ..|...        + ......++|+++|+||+|+....    .++++.++..++.
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~  151 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV----QEVINFLAEKFEV  151 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH----HHHHHHHHHHHTC
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH----HHHHHHHHHHhhh
Confidence            887 8888888888888888877 556542        2 22222579999999999996532    5677888888886


Q ss_pred             c-------EEEEcCCCCCCHHHHHHHHHHHHHHHhc
Q 028686          142 K-------FFETSAKTNLNVEQVFFSIARDIKQRLA  170 (205)
Q Consensus       142 ~-------~~~~Sa~~~~gi~~~~~~i~~~~~~~~~  170 (205)
                      +       ++++||++|.|++++|+++.+.+.+..+
T Consensus       152 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~  187 (190)
T 2cxx_A          152 PLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG  187 (190)
T ss_dssp             CGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred             hhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence            4       7999999999999999999999876544

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.95  E-value=9.9e-28  Score=189.33  Aligned_cols=161  Identities=19%  Similarity=0.302  Sum_probs=129.1

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCC--CC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhh-----hhhhhhhc
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGS--FT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-----RTITTAYY   73 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~--~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~   73 (205)
                      ..+||+++|++|||||||+++|+++.  +. ..+.+|.+..+..  +.+++ .+.+.+||+||++.+     ..++..++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   78 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF   78 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence            35899999999999999999999873  22 2456677765553  34433 578999999999988     77888899


Q ss_pred             cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCCCC-Cc----cCHHHHHHHHHHhC---CcE
Q 028686           74 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHA--SDNVNKVLVGNKADMDESK-RA----VPTSKGQALADEYG---IKF  143 (205)
Q Consensus        74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piiiv~nK~Dl~~~~-~~----~~~~~~~~~~~~~~---~~~  143 (205)
                      +++|++|+|||++++++|+++..|...+....  .+++|+++|+||+|+.+.+ ..    +..+++.+++..+|   +++
T Consensus        79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~  158 (307)
T 3r7w_A           79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG  158 (307)
T ss_dssp             TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence            99999999999999999999987766554432  3679999999999996521 22    55577888999887   799


Q ss_pred             EEEcCCCCCCHHHHHHHHHHHHH
Q 028686          144 FETSAKTNLNVEQVFFSIARDIK  166 (205)
Q Consensus       144 ~~~Sa~~~~gi~~~~~~i~~~~~  166 (205)
                      +++||++ .++.++|..+++.+.
T Consensus       159 ~~tSa~~-~~i~e~~~~iv~~li  180 (307)
T 3r7w_A          159 FPTSIWD-ESLYKAWSQIVCSLI  180 (307)
T ss_dssp             EECCTTS-SHHHHHHHHHHHTTC
T ss_pred             EEeeecC-ChHHHHHHHHHHHHc
Confidence            9999999 799999999887553

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.95  E-value=7.2e-28  Score=176.71  Aligned_cols=159  Identities=18%  Similarity=0.195  Sum_probs=125.8

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh------hhhhhhcc
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR------TITTAYYR   74 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~   74 (205)
                      |..++|+++|++|||||||+++|.+..+.....++.+.+.....+.+++  ..+.+|||||++.+.      .++..++.
T Consensus         5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   82 (188)
T 2wjg_A            5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII   82 (188)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence            5678999999999999999999999775555556666666667777766  679999999988764      34555664


Q ss_pred             --CCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCC
Q 028686           75 --GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL  152 (205)
Q Consensus        75 --~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  152 (205)
                        .++++++|+|.++   ++....|+..+..   .+.|+++|+||+|+... ..+. ++...+++.++++++++||+++.
T Consensus        83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~~~~Sa~~~~  154 (188)
T 2wjg_A           83 NEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKS-LGIE-IDVDKLEKILGVKVVPLSAAKKM  154 (188)
T ss_dssp             HHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHH-TTCC-CCHHHHHHHHTSCEEECBGGGTB
T ss_pred             ccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhcccc-ccch-HHHHHHHHHhCCCeEEEEecCCC
Confidence              4999999999875   4556667777755   46899999999998542 2222 45677888889999999999999


Q ss_pred             CHHHHHHHHHHHHHHHh
Q 028686          153 NVEQVFFSIARDIKQRL  169 (205)
Q Consensus       153 gi~~~~~~i~~~~~~~~  169 (205)
                      |++++|+++.+.+.++.
T Consensus       155 ~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          155 GIEELKKAISIAVKDKK  171 (188)
T ss_dssp             SHHHHHHHHHHHHTTC-
T ss_pred             CHHHHHHHHHHHHHhcc
Confidence            99999999999886654

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.95  E-value=6.3e-29  Score=195.44  Aligned_cols=159  Identities=16%  Similarity=0.206  Sum_probs=122.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCC---CcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhh---hhhhhccCCcE
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTT---SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT---ITTAYYRGAMG   78 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~d~   78 (205)
                      ||+++|+.|||||||++++.+.....   .+.||.+.++..    ++ ..+.+++|||+|+++|..   +...+++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            68999999999999999887664332   356788766653    22 347899999999999964   46889999999


Q ss_pred             EEEEEeCCCh--hHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC------CccCHHHHHHHHHH----hCCcEEEE
Q 028686           79 ILLVYDVTDE--SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK------RAVPTSKGQALADE----YGIKFFET  146 (205)
Q Consensus        79 ~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~------~~~~~~~~~~~~~~----~~~~~~~~  146 (205)
                      +|+|||++++  +++..+..|+..+.... +++|+++++||+|+.+.+      +.+..++++++++.    .+++++++
T Consensus        76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT  154 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNLAMIIEYAYKVN-PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT  154 (331)
T ss_dssp             EEEECCCSSCTTHHHHHHHHHHHHHHHHC-TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHHhhcC-CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence            9999999997  44444444555554443 679999999999997532      34566667777775    67899999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHhc
Q 028686          147 SAKTNLNVEQVFFSIARDIKQRLA  170 (205)
Q Consensus       147 Sa~~~~gi~~~~~~i~~~~~~~~~  170 (205)
                      ||++ .+|.++|..+++.+.++.+
T Consensus       155 SAkd-~nV~eAFs~iv~~li~~~~  177 (331)
T 3r7w_B          155 SIFD-HSIYEAFSRIVQKLIPELS  177 (331)
T ss_dssp             CSSS-SHHHHHHHHHHTTSSTTHH
T ss_pred             ccCC-CcHHHHHHHHHHHHHhhHH
Confidence            9998 4899999999887755544

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.95  E-value=2.1e-27  Score=172.41  Aligned_cols=154  Identities=21%  Similarity=0.197  Sum_probs=115.1

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhh------h--hhhhc
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------I--TTAYY   73 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~--~~~~~   73 (205)
                      .++|+++|++|||||||+++|.+.... ....++.+.++....+.+++.  .+.+|||||+.++..      +  ...++
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   81 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQEI   81 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence            479999999999999999999987642 223344445566667777774  488999999864221      1  12357


Q ss_pred             cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCC
Q 028686           74 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN  153 (205)
Q Consensus        74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  153 (205)
                      +.+|++++|||++++.+++ ...|+..+......++|+++|+||+|+.+....        ++...+.+++++||+++.|
T Consensus        82 ~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~--------~~~~~~~~~~~~SA~~g~g  152 (172)
T 2gj8_A           82 EQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETLG--------MSEVNGHALIRLSARTGEG  152 (172)
T ss_dssp             HTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE--------EEEETTEEEEECCTTTCTT
T ss_pred             HhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchhh--------hhhccCCceEEEeCCCCCC
Confidence            8999999999999988876 346888777665567999999999998542211        1223467899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 028686          154 VEQVFFSIARDIKQ  167 (205)
Q Consensus       154 i~~~~~~i~~~~~~  167 (205)
                      ++++|++|.+.+..
T Consensus       153 v~~l~~~l~~~~~~  166 (172)
T 2gj8_A          153 VDVLRNHLKQSMGF  166 (172)
T ss_dssp             HHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999887643

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.94  E-value=5.4e-27  Score=167.62  Aligned_cols=150  Identities=19%  Similarity=0.162  Sum_probs=107.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh-------hhhhhhhhccC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-------FRTITTAYYRG   75 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~   75 (205)
                      .||+++|++|+|||||+++|.+..+. ....++.+.+.....+..++.  .+.+||+||+..       +...+..+++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            58999999999999999999998743 233333444455566666664  689999999876       44556778899


Q ss_pred             CcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC-cEEEEcCCCCCCH
Q 028686           76 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNV  154 (205)
Q Consensus        76 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi  154 (205)
                      +|++++|+|++++.+...  .|+..+...  .+.|+++|+||+|+.+.     .+++.+++ ..++ +++++||+++.|+
T Consensus        80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~-----~~~~~~~~-~~~~~~~~~~Sa~~~~gv  149 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKH-----ELYLGPLY-GLGFGDPIPTSSEHARGL  149 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGG-----GGGCGGGG-GGSSCSCEECBTTTTBSH
T ss_pred             CCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccc-----hHhHHHHH-hCCCCCeEEEecccCCCh
Confidence            999999999998543322  222222222  35899999999999653     23344455 5676 8999999999999


Q ss_pred             HHHHHHHHHHH
Q 028686          155 EQVFFSIARDI  165 (205)
Q Consensus       155 ~~~~~~i~~~~  165 (205)
                      +++|+++.+.+
T Consensus       150 ~~l~~~l~~~l  160 (161)
T 2dyk_A          150 EELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhC
Confidence            99999998764

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.94  E-value=1.5e-26  Score=170.63  Aligned_cols=155  Identities=14%  Similarity=0.158  Sum_probs=107.1

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCC----------hhhhhhhhhhh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QERFRTITTAY   72 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~~~~   72 (205)
                      .++|+|+|.+|||||||+++|++..+...+.++.+.+.......+++   .+.+|||||          ++.+..++..+
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   99 (195)
T 1svi_A           23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIETY   99 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHHHH
Confidence            58999999999999999999999876555555555444333444443   589999999          77788888888


Q ss_pred             ccCC---cEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccC--HHHHHH-HHHHhCCcEEEE
Q 028686           73 YRGA---MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP--TSKGQA-LADEYGIKFFET  146 (205)
Q Consensus        73 ~~~~---d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~--~~~~~~-~~~~~~~~~~~~  146 (205)
                      ++.+   |++++|+|++++.++.+.. ++..+..   .+.|+++|+||+|+.+. ..+.  .+++.+ +....+++++++
T Consensus       100 ~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  174 (195)
T 1svi_A          100 ITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPK-GKWDKHAKVVRQTLNIDPEDELILF  174 (195)
T ss_dssp             HHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCG-GGHHHHHHHHHHHHTCCTTSEEEEC
T ss_pred             HhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCCh-HHHHHHHHHHHHHHcccCCCceEEE
Confidence            8777   9999999999877776542 2233322   46899999999999652 2221  122222 222345799999


Q ss_pred             cCCCCCCHHHHHHHHHHHH
Q 028686          147 SAKTNLNVEQVFFSIARDI  165 (205)
Q Consensus       147 Sa~~~~gi~~~~~~i~~~~  165 (205)
                      ||+++.|++++|++|.+.+
T Consensus       175 Sa~~~~gv~~l~~~l~~~l  193 (195)
T 1svi_A          175 SSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             CTTTCTTHHHHHHHHHHHH
T ss_pred             EccCCCCHHHHHHHHHHHh
Confidence            9999999999999998875

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.94  E-value=2.9e-26  Score=176.69  Aligned_cols=156  Identities=16%  Similarity=0.139  Sum_probs=121.0

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhh------hhhhhc-
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------ITTAYY-   73 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~-   73 (205)
                      +..++|+++|.+|||||||+++|.+..+.....|+.+.+.....+...+  ..+.+||+||.+.+..      +...++ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            3568999999999999999999999876555555555555555555555  6799999999887654      234555 


Q ss_pred             -cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCC
Q 028686           74 -RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL  152 (205)
Q Consensus        74 -~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  152 (205)
                       ..+|++++|+|+++.++..   .|...+..   .++|+++|+||+|+... ..+. .+...+++.++++++++||++|.
T Consensus        81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~---~~~pvilv~NK~Dl~~~-~~i~-~~~~~l~~~lg~~vi~~SA~~g~  152 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQSL---YLLLEILE---MEKKVILAMTAIDEAKK-TGMK-IDRYELQKHLGIPVVFTSSVTGE  152 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHHH---HHHHHHHT---TTCCEEEEEECHHHHHH-TTCC-BCHHHHHHHHCSCEEECCTTTCT
T ss_pred             hcCCCEEEEEeCCCchhhHH---HHHHHHHh---cCCCEEEEEECcCCCCc-cchH-HHHHHHHHHcCCCEEEEEeeCCc
Confidence             5899999999999976543   35555544   36999999999998542 2222 34778888999999999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 028686          153 NVEQVFFSIARDIK  166 (205)
Q Consensus       153 gi~~~~~~i~~~~~  166 (205)
                      |++++|+++.+.+.
T Consensus       153 gi~el~~~i~~~~~  166 (258)
T 3a1s_A          153 GLEELKEKIVEYAQ  166 (258)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhh
Confidence            99999999988764

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.94  E-value=2.2e-27  Score=200.24  Aligned_cols=163  Identities=20%  Similarity=0.253  Sum_probs=124.1

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEE--------EECCEEEEEEEEeCCChhhhhhhhhhhc
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTI--------ELDGKRIKLQIWDTAGQERFRTITTAYY   73 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~--------~~~~~~~~~~i~D~~g~~~~~~~~~~~~   73 (205)
                      ..+||+++|.+|||||||+++|.+..+...+.+|.+.++.....        ..++..+.+.+||+||++.+..++..++
T Consensus        40 ~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l  119 (535)
T 3dpu_A           40 QEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFM  119 (535)
T ss_dssp             CEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHc
Confidence            46899999999999999999999999888888888877765521        1223457899999999999999999999


Q ss_pred             cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCC
Q 028686           74 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN  153 (205)
Q Consensus        74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  153 (205)
                      +.+|++|+|||+++.   +.+..|+..+.... ++.|+++|+||+|+.+ ...+..++++.++...+++++++||++|.|
T Consensus       120 ~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~vSA~~g~g  194 (535)
T 3dpu_A          120 TRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENP-SYNIEQKKINERFPAIENRFHRISCKNGDG  194 (535)
T ss_dssp             HSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCT-TCCCCHHHHHHHCGGGTTCEEECCC-----
T ss_pred             cCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCccc-ccccCHHHHHHHHHhcCCceEEEecCcccC
Confidence            999999999999765   55677888888775 4699999999999975 455677888888888899999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 028686          154 VEQVFFSIARDIKQRL  169 (205)
Q Consensus       154 i~~~~~~i~~~~~~~~  169 (205)
                      ++++|+++.+.+.+..
T Consensus       195 i~eL~~~l~~~~~~~~  210 (535)
T 3dpu_A          195 VESIAKSLKSAVLHPD  210 (535)
T ss_dssp             CTTHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHHhccc
Confidence            9999999999886543

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.93  E-value=1.1e-26  Score=180.59  Aligned_cols=156  Identities=15%  Similarity=0.117  Sum_probs=119.9

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhh----------hhh
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT----------ITT   70 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~   70 (205)
                      |..++|+++|.+|||||||+|+|.+........++.+.+.....+...+  ..+.+|||||.+.+..          +..
T Consensus         1 M~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~   78 (274)
T 3i8s_A            1 MKKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIAC   78 (274)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHH
Confidence            7889999999999999999999999876555566666667666777666  4578999999876552          223


Q ss_pred             hhc--cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcC
Q 028686           71 AYY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSA  148 (205)
Q Consensus        71 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  148 (205)
                      .++  ..+|++++|+|+++.+....+..++   ...   ++|+++|+||+|+.+.. . ...+...+.+.++++++++||
T Consensus        79 ~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l---~~~---~~p~ivv~NK~Dl~~~~-~-~~~~~~~l~~~lg~~~i~~SA  150 (274)
T 3i8s_A           79 HYILSGDADLLINVVDASNLERNLYLTLQL---LEL---GIPCIVALNMLDIAEKQ-N-IRIEIDALSARLGCPVIPLVS  150 (274)
T ss_dssp             HHHHHTCCSEEEEEEEGGGHHHHHHHHHHH---HHH---TCCEEEEEECHHHHHHT-T-EEECHHHHHHHHTSCEEECCC
T ss_pred             HHHhhcCCCEEEEEecCCChHHHHHHHHHH---Hhc---CCCEEEEEECccchhhh-h-HHHHHHHHHHhcCCCEEEEEc
Confidence            333  6899999999999876655444433   332   58999999999985421 1 123456778888999999999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q 028686          149 KTNLNVEQVFFSIARDIK  166 (205)
Q Consensus       149 ~~~~gi~~~~~~i~~~~~  166 (205)
                      ++|.|++++|+++.+.+.
T Consensus       151 ~~g~gi~el~~~i~~~~~  168 (274)
T 3i8s_A          151 TRGRGIEALKLAIDRYKA  168 (274)
T ss_dssp             GGGHHHHHHHHHHHTCCC
T ss_pred             CCCCCHHHHHHHHHHHHh
Confidence            999999999999877654

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.93  E-value=1.2e-25  Score=165.48  Aligned_cols=155  Identities=19%  Similarity=0.242  Sum_probs=111.1

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCC----------hhhhhhhhhhh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QERFRTITTAY   72 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~~~~   72 (205)
                      .++|+++|++|||||||+++|++..+ ..+.++.+.+........+.   .+.+||+||          ++.+..++..+
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   98 (195)
T 3pqc_A           23 KGEVAFVGRSNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVEDY   98 (195)
T ss_dssp             TCEEEEEEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHHHH
Confidence            47999999999999999999999873 23334443333323333332   478999999          66777777777


Q ss_pred             ccCC---cEEEEEEeCCChhH--HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC-CccCHHHHHHHHHHhC-CcEEE
Q 028686           73 YRGA---MGILLVYDVTDESS--FNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK-RAVPTSKGQALADEYG-IKFFE  145 (205)
Q Consensus        73 ~~~~---d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~  145 (205)
                      ++.+   +++++|+|.++..+  ...+..|+...      +.|+++|+||+|+.+.. .....+++..++...+ +++++
T Consensus        99 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (195)
T 3pqc_A           99 FKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIP  172 (195)
T ss_dssp             HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEE
T ss_pred             HhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEE
Confidence            7766   99999999987533  33333343332      58999999999996422 2233445556666544 79999


Q ss_pred             EcCCCCCCHHHHHHHHHHHHHH
Q 028686          146 TSAKTNLNVEQVFFSIARDIKQ  167 (205)
Q Consensus       146 ~Sa~~~~gi~~~~~~i~~~~~~  167 (205)
                      +||++|.|++++|+++.+.+.+
T Consensus       173 ~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          173 TSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHC-
T ss_pred             EecCCCCCHHHHHHHHHHHhhc
Confidence            9999999999999999988753

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.93  E-value=2.3e-26  Score=177.04  Aligned_cols=151  Identities=14%  Similarity=0.101  Sum_probs=119.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhh----------hhhhhc
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT----------ITTAYY   73 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~~~   73 (205)
                      .+|+++|.+|||||||+|+|.+........|+.+.+.....+.+++.  .+.+|||||...+..          +...++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            37899999999999999999998765555666766777777777774  789999999876653          455666


Q ss_pred             --cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCC
Q 028686           74 --RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN  151 (205)
Q Consensus        74 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  151 (205)
                        .++|++|+|+|+++.+++..+..|   +..   .++|+++|+||+|+....  ....+...+...++++++++||++|
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l~~---~~~pvilv~NK~Dl~~~~--~~~~~~~~l~~~lg~~vi~~SA~~g  151 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLTSQ---LFE---LGKPVVVALNMMDIAEHR--GISIDTEKLESLLGCSVIPIQAHKN  151 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHHHH---HTT---SCSCEEEEEECHHHHHHT--TCEECHHHHHHHHCSCEEECBGGGT
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHHHH---HHH---cCCCEEEEEEChhcCCcC--CcHHHHHHHHHHcCCCEEEEECCCC
Confidence              889999999999997766554433   322   368999999999986422  1223355677888999999999999


Q ss_pred             CCHHHHHHHHHHH
Q 028686          152 LNVEQVFFSIARD  164 (205)
Q Consensus       152 ~gi~~~~~~i~~~  164 (205)
                      .|++++|+++.+.
T Consensus       152 ~gi~el~~~i~~~  164 (256)
T 3iby_A          152 IGIPALQQSLLHC  164 (256)
T ss_dssp             BSHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHhh
Confidence            9999999999876

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.93  E-value=2.4e-25  Score=172.86  Aligned_cols=159  Identities=18%  Similarity=0.140  Sum_probs=124.4

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhh------hhhhhc-
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------ITTAYY-   73 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~-   73 (205)
                      |..++|+++|++|||||||+++|.+..+.....++.+.+.....+.+++.  .+.+||+||...+..      ....++ 
T Consensus         1 m~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~   78 (271)
T 3k53_A            1 MVLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFIL   78 (271)
T ss_dssp             CCCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHH
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhh
Confidence            77899999999999999999999998776566677777777777777774  489999999887655      455565 


Q ss_pred             -cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCC
Q 028686           74 -RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL  152 (205)
Q Consensus        74 -~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  152 (205)
                       .++|++++|+|+++.+.   ...|+..+...  ...|+++|+||+|+.+. .... .+...+.+.++++++++||++|.
T Consensus        79 ~~~~d~vi~v~D~~~~~~---~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~-~~~~-~~~~~l~~~lg~~~~~~Sa~~g~  151 (271)
T 3k53_A           79 DGNADVIVDIVDSTCLMR---NLFLTLELFEM--EVKNIILVLNKFDLLKK-KGAK-IDIKKMRKELGVPVIPTNAKKGE  151 (271)
T ss_dssp             TTCCSEEEEEEEGGGHHH---HHHHHHHHHHT--TCCSEEEEEECHHHHHH-HTCC-CCHHHHHHHHSSCEEECBGGGTB
T ss_pred             ccCCcEEEEEecCCcchh---hHHHHHHHHhc--CCCCEEEEEEChhcCcc-cccH-HHHHHHHHHcCCcEEEEEeCCCC
Confidence             68999999999998642   33344444443  22899999999998542 1122 23677888899999999999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q 028686          153 NVEQVFFSIARDIKQR  168 (205)
Q Consensus       153 gi~~~~~~i~~~~~~~  168 (205)
                      |++++|+++.+.+...
T Consensus       152 gi~~l~~~i~~~~~~~  167 (271)
T 3k53_A          152 GVEELKRMIALMAEGK  167 (271)
T ss_dssp             THHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHhcc
Confidence            9999999999887543

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.93  E-value=8.3e-26  Score=175.21  Aligned_cols=153  Identities=16%  Similarity=0.118  Sum_probs=115.4

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh------hhhhhhcc-
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR------TITTAYYR-   74 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~-   74 (205)
                      ..++|+++|++|||||||+|+|.+........|+.+  +......+.. ...+.+|||||++.+.      .+...++. 
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~t--v~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVT--VERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCC--CSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCc--EEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            357999999999999999999998764443334333  2233334444 5679999999998765      45566665 


Q ss_pred             -CCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCC
Q 028686           75 -GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN  153 (205)
Q Consensus        75 -~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  153 (205)
                       .+|++++|+|+++.+++.   .|...+..   .++|+++|+||+|+... ..+. .+...++..++++++++||++|.|
T Consensus        79 ~~~d~vi~V~D~t~~e~~~---~~~~~l~~---~~~p~ilv~NK~Dl~~~-~~~~-~~~~~l~~~lg~~vi~~SA~~g~g  150 (272)
T 3b1v_A           79 QRADSILNVVDATNLERNL---YLTTQLIE---TGIPVTIALNMIDVLDG-QGKK-INVDKLSYHLGVPVVATSALKQTG  150 (272)
T ss_dssp             TCCSEEEEEEEGGGHHHHH---HHHHHHHH---TCSCEEEEEECHHHHHH-TTCC-CCHHHHHHHHTSCEEECBTTTTBS
T ss_pred             CCCCEEEEEecCCchHhHH---HHHHHHHh---cCCCEEEEEEChhhCCc-CCcH-HHHHHHHHHcCCCEEEEEccCCCC
Confidence             699999999999876543   45555544   46999999999998542 2222 456778888999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028686          154 VEQVFFSIARDI  165 (205)
Q Consensus       154 i~~~~~~i~~~~  165 (205)
                      ++++|+++.+.+
T Consensus       151 i~el~~~i~~~~  162 (272)
T 3b1v_A          151 VDQVVKKAAHTT  162 (272)
T ss_dssp             HHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHH
Confidence            999999998764

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.93  E-value=8.7e-25  Score=172.55  Aligned_cols=159  Identities=16%  Similarity=0.066  Sum_probs=122.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCC-CcccceeeEEEEEEEEECCEEEEEEEEeCCChhhh----------hhhhhhh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF----------RTITTAY   72 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----------~~~~~~~   72 (205)
                      -.|+++|.+|||||||+|+|++.++.. ...+....+........+ ....+.+|||||..++          ......+
T Consensus        11 g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~   89 (308)
T 3iev_A           11 GYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQS   89 (308)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHHHHHHH
Confidence            468999999999999999999988642 222222223333333444 1367999999998543          3556778


Q ss_pred             ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC--CcEEEEcCCC
Q 028686           73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG--IKFFETSAKT  150 (205)
Q Consensus        73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~  150 (205)
                      +..+|++++|+|++++.++.+...|++.+..   .+.|+++|+||+|+.. ......+.+..+...++  .+++++||++
T Consensus        90 l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~-~~~~~~~~~~~l~~~~~~~~~i~~vSA~~  165 (308)
T 3iev_A           90 LEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIG-PAKNVLPLIDEIHKKHPELTEIVPISALK  165 (308)
T ss_dssp             HHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSS-SGGGGHHHHHHHHHHCTTCCCEEECBTTT
T ss_pred             hhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCC-CHHHHHHHHHHHHHhccCCCeEEEEeCCC
Confidence            8899999999999998888887777887776   3589999999999963 24455667777777775  7899999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 028686          151 NLNVEQVFFSIARDIKQ  167 (205)
Q Consensus       151 ~~gi~~~~~~i~~~~~~  167 (205)
                      |.|++++|+++.+.+.+
T Consensus       166 g~gv~~L~~~l~~~l~~  182 (308)
T 3iev_A          166 GANLDELVKTILKYLPE  182 (308)
T ss_dssp             TBSHHHHHHHHHHHSCB
T ss_pred             CCCHHHHHHHHHHhCcc
Confidence            99999999999987743

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.92  E-value=1.9e-24  Score=178.15  Aligned_cols=161  Identities=16%  Similarity=0.104  Sum_probs=116.8

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCCh----------hhhhhhhh-
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ----------ERFRTITT-   70 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~~-   70 (205)
                      .++|+++|.+|+|||||+|+|++.... ....++++.+.....+.+++.  .+.+|||||+          +.|..+.. 
T Consensus       175 ~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~~  252 (436)
T 2hjg_A          175 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRAL  252 (436)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHHHH
Confidence            489999999999999999999998753 334455555666666777774  4899999998          45554443 


Q ss_pred             hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHH-HHHH----HhCCcEEE
Q 028686           71 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ-ALAD----EYGIKFFE  145 (205)
Q Consensus        71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~-~~~~----~~~~~~~~  145 (205)
                      .+++.+|++++|+|++++.++.+. .|+..+..   .+.|+++|+||+|+.+. .....++.. .+..    ..++++++
T Consensus       253 ~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~  327 (436)
T 2hjg_A          253 KAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDK-DESTMKEFEENIRDHFQFLDYAPILF  327 (436)
T ss_dssp             HHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCC-CTTHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred             HHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCc-chHHHHHHHHHHHHhcccCCCCCEEE
Confidence            478889999999999998887765 46666654   46999999999999753 223223332 2222    23589999


Q ss_pred             EcCCCCCCHHHHHHHHHHHHHHHhc
Q 028686          146 TSAKTNLNVEQVFFSIARDIKQRLA  170 (205)
Q Consensus       146 ~Sa~~~~gi~~~~~~i~~~~~~~~~  170 (205)
                      +||++|.|++++|+.+.+.+..+..
T Consensus       328 ~SA~tg~~v~~l~~~i~~~~~~~~~  352 (436)
T 2hjg_A          328 MSALTKKRIHTLMPAIIKASENHSL  352 (436)
T ss_dssp             CCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred             EecccCCCHHHHHHHHHHHHHHhhc
Confidence            9999999999999999998876543

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.91  E-value=8e-25  Score=164.71  Aligned_cols=163  Identities=13%  Similarity=0.066  Sum_probs=106.4

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEEC-CEEEEEEEEeCCC----------hhhhhhhhhh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAG----------QERFRTITTA   71 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~g----------~~~~~~~~~~   71 (205)
                      .++|+|+|.+|+|||||+++|++........++.+.+.......+. .....+.+|||||          ++.+..+...
T Consensus        29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  108 (223)
T 4dhe_A           29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSS  108 (223)
T ss_dssp             SCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHH
Confidence            4799999999999999999999986321111222111222222332 2235689999999          4455666666


Q ss_pred             hccC---CcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC-ccCHHHHHHHHHH-------hC
Q 028686           72 YYRG---AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-AVPTSKGQALADE-------YG  140 (205)
Q Consensus        72 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~-~~~~~~~~~~~~~-------~~  140 (205)
                      +++.   +|++++|+|.++..+.. ...|+..+..   .+.|+++|+||+|+.+... ....+++.+....       .+
T Consensus       109 ~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~  184 (223)
T 4dhe_A          109 YLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGK  184 (223)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred             HHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCC
Confidence            6665   78899999998753322 2334555544   4589999999999864211 0011222222222       45


Q ss_pred             CcEEEEcCCCCCCHHHHHHHHHHHHHHHh
Q 028686          141 IKFFETSAKTNLNVEQVFFSIARDIKQRL  169 (205)
Q Consensus       141 ~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  169 (205)
                      .+++++||++|.|++++|++|.+.+....
T Consensus       185 ~~~~~~SA~~g~gv~~l~~~l~~~~~~~~  213 (223)
T 4dhe_A          185 LTVQLFSALKRTGLDDAHALIESWLRPAA  213 (223)
T ss_dssp             EEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred             CeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence            78999999999999999999998885543

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.91  E-value=1.8e-25  Score=167.80  Aligned_cols=141  Identities=18%  Similarity=0.233  Sum_probs=105.7

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCC---CcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccC----
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTT---SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG----   75 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~----   75 (205)
                      .++|+++|++|+|||||+++|.+..+..   .+.++.+.++         ..+.+.+||+||++.++..+..+++.    
T Consensus        12 ~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   82 (218)
T 1nrj_B           12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRAKF   82 (218)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHHGGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhcccc
Confidence            5799999999999999999999987654   2344333222         33568999999999998888888877    


Q ss_pred             CcEEEEEEeCC-ChhHHHHHHHHHHHHHhh----cCCCCcEEEEEeCCCCCCCCCccC------HHHHHHHHHHhCCcEE
Q 028686           76 AMGILLVYDVT-DESSFNNIRNWIRNIEQH----ASDNVNKVLVGNKADMDESKRAVP------TSKGQALADEYGIKFF  144 (205)
Q Consensus        76 ~d~~i~v~d~~-~~~s~~~~~~~~~~i~~~----~~~~~piiiv~nK~Dl~~~~~~~~------~~~~~~~~~~~~~~~~  144 (205)
                      +|++|+|||++ ++++|..+..|+..+...    ...++|+++|+||+|+.+. ..+.      .+++..++...+++++
T Consensus        83 ~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~  161 (218)
T 1nrj_B           83 VKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA-RPPSKIKDALESEIQKVIERRKKSLN  161 (218)
T ss_dssp             EEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhccc-CCHHHHHHHHHHHHHHHHHHHhcccc
Confidence            89999999999 889999999988888654    3357999999999999653 2222      4556677777778999


Q ss_pred             EEcCCCCCC
Q 028686          145 ETSAKTNLN  153 (205)
Q Consensus       145 ~~Sa~~~~g  153 (205)
                      ++||+++.+
T Consensus       162 ~~Sa~~~~~  170 (218)
T 1nrj_B          162 EVERKINEE  170 (218)
T ss_dssp             C--------
T ss_pred             ccccccccc
Confidence            999998864

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.91  E-value=5.6e-24  Score=176.34  Aligned_cols=156  Identities=19%  Similarity=0.118  Sum_probs=100.0

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCC-CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhh--------hhhc
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT--------TAYY   73 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~~   73 (205)
                      .++|+++|.+|+|||||+|+|++... .....++++.++....+.+++  +.+.+|||||..++...+        ..++
T Consensus       233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~  310 (476)
T 3gee_A          233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM  310 (476)
T ss_dssp             CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence            47899999999999999999998863 234445555667667777877  569999999987765443        3367


Q ss_pred             cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCC
Q 028686           74 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN  153 (205)
Q Consensus        74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  153 (205)
                      +.+|++++|+|++++.++.++..+...+...  .+.|+++|+||+|+.+. ...   +.+.+......+++++||++|.|
T Consensus       311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l--~~~piIvV~NK~Dl~~~-~~~---~~~~l~~~~~~~~i~vSAktg~G  384 (476)
T 3gee_A          311 AEADLILYLLDLGTERLDDELTEIRELKAAH--PAAKFLTVANKLDRAAN-ADA---LIRAIADGTGTEVIGISALNGDG  384 (476)
T ss_dssp             SSCSEEEEEEETTTCSSGGGHHHHHHHHHHC--TTSEEEEEEECTTSCTT-THH---HHHHHHHHHTSCEEECBTTTTBS
T ss_pred             ccCCEEEEEEECCCCcchhhhHHHHHHHHhc--CCCCEEEEEECcCCCCc-cch---hHHHHHhcCCCceEEEEECCCCC
Confidence            8999999999999988876544433333333  26999999999999653 221   22334443237899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028686          154 VEQVFFSIARDIK  166 (205)
Q Consensus       154 i~~~~~~i~~~~~  166 (205)
                      ++++|++|.+.+.
T Consensus       385 I~eL~~~i~~~~~  397 (476)
T 3gee_A          385 IDTLKQHMGDLVK  397 (476)
T ss_dssp             HHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999886

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.91  E-value=5.2e-23  Score=165.55  Aligned_cols=162  Identities=15%  Similarity=0.146  Sum_probs=119.6

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh---------hhhhhhc
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR---------TITTAYY   73 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~   73 (205)
                      .++|+++|.+|||||||+++|.+........+....+.....+...+  ..+.+|||||.....         .....+.
T Consensus       167 ~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~  244 (357)
T 2e87_A          167 IPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILALR  244 (357)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence            47899999999999999999998774322222222223333334443  568999999975321         1122345


Q ss_pred             cCCcEEEEEEeCCChh--HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCC
Q 028686           74 RGAMGILLVYDVTDES--SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN  151 (205)
Q Consensus        74 ~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  151 (205)
                      ..+|++++|+|++++.  +++....|+..+..... +.|+++|+||.|+... .  ..++...++...+++++++||++|
T Consensus       245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~-~--~~~~~~~~~~~~~~~~~~iSA~~g  320 (357)
T 2e87_A          245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADE-E--NIKRLEKFVKEKGLNPIKISALKG  320 (357)
T ss_dssp             GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCH-H--HHHHHHHHHHHTTCCCEECBTTTT
T ss_pred             hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCCh-H--HHHHHHHHHHhcCCCeEEEeCCCC
Confidence            5799999999999877  67888889988877653 7999999999998542 1  124556667777899999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhc
Q 028686          152 LNVEQVFFSIARDIKQRLA  170 (205)
Q Consensus       152 ~gi~~~~~~i~~~~~~~~~  170 (205)
                      +|++++|+++.+.+....+
T Consensus       321 ~gi~~l~~~i~~~l~~~~~  339 (357)
T 2e87_A          321 TGIDLVKEEIIKTLRPLAE  339 (357)
T ss_dssp             BTHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHh
Confidence            9999999999998866543

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.90  E-value=8.5e-24  Score=175.19  Aligned_cols=162  Identities=16%  Similarity=0.108  Sum_probs=118.5

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCC-CCCcccceeeEEEEEEEEECCEEEEEEEEeCCC----------hhhhhhhhh-
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QERFRTITT-   70 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~~-   70 (205)
                      .++|+++|.+|+|||||+++|++... .....++++.+.....+..++.  .+.+|||||          ++.+..+.. 
T Consensus       195 ~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~~  272 (456)
T 4dcu_A          195 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRAL  272 (456)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred             cceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence            58999999999999999999997752 2333444444444456667774  689999999          666766654 


Q ss_pred             hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHh-----CCcEEE
Q 028686           71 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-----GIKFFE  145 (205)
Q Consensus        71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~  145 (205)
                      .+++.+|++++|+|+++..+ +....|+..+..   .+.|+++|+||+|+.+ ......+++.+.+...     ++++++
T Consensus       273 ~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (456)
T 4dcu_A          273 KAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AGKAVVIVVNKWDAVD-KDESTMKEFEENIRDHFQFLDYAPILF  347 (456)
T ss_dssp             HHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSC-CCSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred             HHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEEEEEChhcCC-CchHHHHHHHHHHHHhcccCCCCCEEE
Confidence            37889999999999988533 222345555544   4699999999999975 3445556666655544     489999


Q ss_pred             EcCCCCCCHHHHHHHHHHHHHHHhcc
Q 028686          146 TSAKTNLNVEQVFFSIARDIKQRLAD  171 (205)
Q Consensus       146 ~Sa~~~~gi~~~~~~i~~~~~~~~~~  171 (205)
                      +||++|.|++++|+++.+.+..+...
T Consensus       348 ~SA~~g~gv~~l~~~i~~~~~~~~~~  373 (456)
T 4dcu_A          348 MSALTKKRIHTLMPAIIKASENHSLR  373 (456)
T ss_dssp             CCTTTCTTGGGHHHHHHHHHHHHTCC
T ss_pred             EcCCCCcCHHHHHHHHHHHHHHhccc
Confidence            99999999999999999988776544

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.90  E-value=2.2e-23  Score=171.99  Aligned_cols=178  Identities=20%  Similarity=0.241  Sum_probs=115.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh---------hhhhhhhhc
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---------FRTITTAYY   73 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~   73 (205)
                      -+|+++|.||||||||+|+|++.... ....|+.+.+.....+.+++.  .+.+|||||.+.         +......++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            37999999999999999999988743 333444555555667777775  478999999653         345567789


Q ss_pred             cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHH-HHHHHHhCC-cEEEEcCCCC
Q 028686           74 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG-QALADEYGI-KFFETSAKTN  151 (205)
Q Consensus        74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~~  151 (205)
                      +.+|++++|+|+.+..+..+  .++..+.+.  .+.|+++|+||+|+...   . ..++ .++. ..++ +++++||++|
T Consensus        80 ~~ad~il~V~D~~~~~~~~d--~~i~~~l~~--~~~p~ilv~NK~D~~~~---~-~~~~~~~~~-~lg~~~~~~iSA~~g  150 (439)
T 1mky_A           80 READLVLFVVDGKRGITKED--ESLADFLRK--STVDTILVANKAENLRE---F-EREVKPELY-SLGFGEPIPVSAEHN  150 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHH--HHHHHHHHH--HTCCEEEEEESCCSHHH---H-HHHTHHHHG-GGSSCSCEECBTTTT
T ss_pred             HhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEeCCCCccc---c-HHHHHHHHH-hcCCCCEEEEeccCC
Confidence            99999999999987544432  222222222  25899999999998421   1 1223 3443 4566 7899999999


Q ss_pred             CCHHHHHHHHHHHHHHHhcc-cC--CCCCCccccccCCCCCCCC
Q 028686          152 LNVEQVFFSIARDIKQRLAD-TD--SRSEPSTIKINQPDQAGGV  192 (205)
Q Consensus       152 ~gi~~~~~~i~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~  192 (205)
                      .|++++|+++.+.+.+.... ..  ....+.++.+..++..+++
T Consensus       151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKS  194 (439)
T 1mky_A          151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKS  194 (439)
T ss_dssp             BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHH
T ss_pred             CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHH
Confidence            99999999999988754311 11  1223345556665555543

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.90  E-value=3.3e-23  Score=162.88  Aligned_cols=154  Identities=16%  Similarity=0.081  Sum_probs=107.8

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCC-CcccceeeEEEEEEEEECCEEEEEEEEeCCChhh--------hhhhhhhhc
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTAYY   73 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~   73 (205)
                      ..+|+++|.+|||||||+|+|++.++.. ...+.+..+.....+..++  ..+.+|||||..+        +......++
T Consensus         7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l   84 (301)
T 1wf3_A            7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEAL   84 (301)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence            4579999999999999999999988642 2222222222222333333  6799999999765        445566788


Q ss_pred             cCCcEEEEEEeCCChhHHHHHHHHH-HHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHh-C-CcEEEEcCCC
Q 028686           74 RGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-G-IKFFETSAKT  150 (205)
Q Consensus        74 ~~~d~~i~v~d~~~~~s~~~~~~~~-~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~  150 (205)
                      +.+|++++|+|++++.+..  ..|+ +.+.... ++.|+++|+||+|+.+....     ..+.+..+ + .+++++||++
T Consensus        85 ~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~~~iSA~~  156 (301)
T 1wf3_A           85 ADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEE-----AMKAYHELLPEAEPRMLSALD  156 (301)
T ss_dssp             SSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHH-----HHHHHHHTSTTSEEEECCTTC
T ss_pred             hcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHH-----HHHHHHHhcCcCcEEEEeCCC
Confidence            9999999999998864433  2343 4554432 46999999999998642110     22223322 3 5789999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 028686          151 NLNVEQVFFSIARDIK  166 (205)
Q Consensus       151 ~~gi~~~~~~i~~~~~  166 (205)
                      |.|++++|+++.+.+.
T Consensus       157 g~gv~~l~~~l~~~l~  172 (301)
T 1wf3_A          157 ERQVAELKADLLALMP  172 (301)
T ss_dssp             HHHHHHHHHHHHTTCC
T ss_pred             CCCHHHHHHHHHHhcc
Confidence            9999999999987653

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.90  E-value=2.8e-24  Score=171.33  Aligned_cols=157  Identities=19%  Similarity=0.238  Sum_probs=117.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCC-Cc-ccceeeEEEEEEEEECCEEEEEEEEeCCChhh----hhhhhhhhcc---
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTT-SF-ITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTAYYR---   74 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~-~~-~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~~---   74 (205)
                      .+|+|+|.+|||||||+++|++..... .+ .+|.....  ..+.+++ ...+.+||+||...    +..+...+++   
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~--g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~  235 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNL--GMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIE  235 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCE--EEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceE--EEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHH
Confidence            368999999999999999999876432 22 22332222  2344443 14689999999643    3344455544   


Q ss_pred             CCcEEEEEEeCCC---hhHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC--CcEEEEc
Q 028686           75 GAMGILLVYDVTD---ESSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYG--IKFFETS  147 (205)
Q Consensus        75 ~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~S  147 (205)
                      .++++|+|+|+++   +++++++..|+..+..+..  .+.|+++|+||+|+...     .+....+.+.+.  .+++++|
T Consensus       236 ~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~-----~e~~~~l~~~l~~~~~v~~iS  310 (342)
T 1lnz_A          236 RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA-----AENLEAFKEKLTDDYPVFPIS  310 (342)
T ss_dssp             HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH-----HHHHHHHHHHCCSCCCBCCCS
T ss_pred             hccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC-----HHHHHHHHHHhhcCCCEEEEE
Confidence            5999999999998   7899999999999987642  47999999999998542     245566777666  6899999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHH
Q 028686          148 AKTNLNVEQVFFSIARDIKQR  168 (205)
Q Consensus       148 a~~~~gi~~~~~~i~~~~~~~  168 (205)
                      |+++.|+++++++|.+.+.+.
T Consensus       311 A~tg~gi~eL~~~l~~~l~~~  331 (342)
T 1lnz_A          311 AVTREGLRELLFEVANQLENT  331 (342)
T ss_dssp             SCCSSTTHHHHHHHHHHHTSC
T ss_pred             CCCCcCHHHHHHHHHHHHhhC
Confidence            999999999999999887543

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.90  E-value=2.2e-23  Score=172.94  Aligned_cols=152  Identities=24%  Similarity=0.213  Sum_probs=115.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChh-hhhh--------hhhhhc
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE-RFRT--------ITTAYY   73 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~-~~~~--------~~~~~~   73 (205)
                      ++|+++|.||+|||||+|+|.+.+.. ....++++.++....+.+++  ..+.+|||||.. .+..        ....++
T Consensus       244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~  321 (482)
T 1xzp_A          244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI  321 (482)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence            79999999999999999999998632 34445455566666777777  568999999987 5432        234577


Q ss_pred             cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCC
Q 028686           74 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN  153 (205)
Q Consensus        74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  153 (205)
                      +.+|++++|+|++++.++++.. +++.+     .+.|+++|+||+|+.+.   +..+++..+.. .+++++++||++|.|
T Consensus       322 ~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~---~~~~~~~~~~~-~~~~~i~iSAktg~G  391 (482)
T 1xzp_A          322 EKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK---INEEEIKNKLG-TDRHMVKISALKGEG  391 (482)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC---CCHHHHHHHHT-CSTTEEEEEGGGTCC
T ss_pred             hcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc---cCHHHHHHHhc-CCCcEEEEECCCCCC
Confidence            8999999999999987776543 33333     36899999999999642   34455554432 346899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 028686          154 VEQVFFSIARDIKQ  167 (205)
Q Consensus       154 i~~~~~~i~~~~~~  167 (205)
                      ++++|++|.+.+..
T Consensus       392 i~eL~~~l~~~~~~  405 (482)
T 1xzp_A          392 LEKLEESIYRETQE  405 (482)
T ss_dssp             HHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998764

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.89  E-value=8e-23  Score=170.10  Aligned_cols=157  Identities=15%  Similarity=0.138  Sum_probs=113.9

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCC-------CCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhc
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGS-------FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY   73 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~   73 (205)
                      |..++|+++|.+++|||||+++|.+..       ...+..+.++.+.....+.+++  ..+.+|||||+++|.......+
T Consensus        17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~   94 (482)
T 1wb1_A           17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA   94 (482)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHH
Confidence            567999999999999999999999876       2233333333334334455555  5799999999999988888899


Q ss_pred             cCCcEEEEEEeCCC---hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC-CccCHHHHHHHHHHh----CCcEEE
Q 028686           74 RGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK-RAVPTSKGQALADEY----GIKFFE  145 (205)
Q Consensus        74 ~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-~~~~~~~~~~~~~~~----~~~~~~  145 (205)
                      ..+|++++|+|+++   +++++.+.    .+..   .++|+++++||+|+.+.. .+...+++.+++...    ++++++
T Consensus        95 ~~aD~~ilVvda~~g~~~qt~e~l~----~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~  167 (482)
T 1wb1_A           95 DIIDLALIVVDAKEGPKTQTGEHML----ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIP  167 (482)
T ss_dssp             TSCCEEEEEEETTTCSCHHHHHHHH----HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEE
T ss_pred             hhCCEEEEEEecCCCccHHHHHHHH----HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEE
Confidence            99999999999988   56655543    2222   358999999999996421 122234455565554    578999


Q ss_pred             EcCCCCCCHHHHHHHHHHHHH
Q 028686          146 TSAKTNLNVEQVFFSIARDIK  166 (205)
Q Consensus       146 ~Sa~~~~gi~~~~~~i~~~~~  166 (205)
                      +||++|.|+++++++|.+.+.
T Consensus       168 vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          168 ISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHH
T ss_pred             EECcCCCCHHHHHHHHHHhhc
Confidence            999999999999999998876

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.89  E-value=1.2e-23  Score=173.33  Aligned_cols=180  Identities=17%  Similarity=0.135  Sum_probs=110.6

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChh--------hhhhhhhhh
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE--------RFRTITTAY   72 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~   72 (205)
                      |...+|+++|.+|||||||+|+|++..+.. ..++.|.+.......+......+.+|||||.+        .+...+..+
T Consensus         1 m~~~~V~ivG~~nvGKStL~n~l~~~~~~~-v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~   79 (436)
T 2hjg_A            1 MGKPVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA   79 (436)
T ss_dssp             --CCEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHH
Confidence            556799999999999999999999876531 22333333333333333333579999999985        566777888


Q ss_pred             ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC-cEEEEcCCCC
Q 028686           73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTN  151 (205)
Q Consensus        73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  151 (205)
                      ++.+|++++|+|+.++.++.+  .|+..+.+.  .+.|+++|+||+|+......     +.++. ..+. +++++||++|
T Consensus        80 ~~~ad~il~vvD~~~~~~~~d--~~~~~~l~~--~~~pvilv~NK~D~~~~~~~-----~~~~~-~lg~~~~~~iSA~~g  149 (436)
T 2hjg_A           80 MDEADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTEMRAN-----IYDFY-SLGFGEPYPISGTHG  149 (436)
T ss_dssp             HHHCSEEEEEEETTTCSCHHH--HHHHHHHTT--CCSCEEEEEECCCC-----C-----CCSSG-GGSSCCCEECBTTTT
T ss_pred             HHhCCEEEEEEeCCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccCccchhh-----HHHHH-HcCCCCeEEEeCcCC
Confidence            999999999999998766543  233333222  46899999999998643211     11222 3454 7899999999


Q ss_pred             CCHHHHHHHHHHHHHHHhcccCCCCCCccccccCCCCCCCC
Q 028686          152 LNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGV  192 (205)
Q Consensus       152 ~gi~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (205)
                      .|++++++++.+.+.+... ......+.++.+...+..+++
T Consensus       150 ~gv~~L~~~i~~~l~~~~~-~~~~~~~~ki~lvG~~nvGKS  189 (436)
T 2hjg_A          150 LGLGDLLDAVAEHFKNIPE-TKYNEEVIQFCLIGRPNVGKS  189 (436)
T ss_dssp             BTHHHHHHHHHHTGGGCCS-SCCCTTCEEEEEECSTTSSHH
T ss_pred             CChHHHHHHHHHhcCcccc-ccccccCcEEEEEcCCCCCHH
Confidence            9999999999887753211 111233445555565555543

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.89  E-value=6.2e-24  Score=173.54  Aligned_cols=156  Identities=17%  Similarity=0.129  Sum_probs=113.4

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhh-------hhhhcc
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-------TTAYYR   74 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~~~~   74 (205)
                      .++|+|+|..|+|||||+++|++..+. ....+.++.+.....+.+.+. ..+.+|||||++++..+       ...++.
T Consensus        34 ~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~l~  112 (423)
T 3qq5_A           34 RRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRVFY  112 (423)
T ss_dssp             CEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHHHh
Confidence            589999999999999999999988753 233333334455555666543 27899999999876544       345788


Q ss_pred             CCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCH
Q 028686           75 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV  154 (205)
Q Consensus        75 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  154 (205)
                      .+|++++|+|+...+.   ...|+..+...   ++|+++|+||+|+.+...   .+..+.++..++++++++||++|.|+
T Consensus       113 ~aD~vllVvD~~~~~~---~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~---~~~~~~l~~~~g~~v~~vSAktg~gI  183 (423)
T 3qq5_A          113 RADCGILVTDSAPTPY---EDDVVNLFKEM---EIPFVVVVNKIDVLGEKA---EELKGLYESRYEAKVLLVSALQKKGF  183 (423)
T ss_dssp             SCSEEEEECSSSCCHH---HHHHHHHHHHT---TCCEEEECCCCTTTTCCC---THHHHHSSCCTTCCCCCCSSCCTTST
T ss_pred             cCCEEEEEEeCCChHH---HHHHHHHHHhc---CCCEEEEEeCcCCCCccH---HHHHHHHHHHcCCCEEEEECCCCCCH
Confidence            9999999999944333   34566666654   689999999999975432   26667777788899999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 028686          155 EQVFFSIARDIKQR  168 (205)
Q Consensus       155 ~~~~~~i~~~~~~~  168 (205)
                      +++|++|.+.+.+.
T Consensus       184 ~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          184 DDIGKTISEILPGD  197 (423)
T ss_dssp             TTHHHHHHHHSCCC
T ss_pred             HHHHHHHHHhhhhh
Confidence            99999999887443

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.89  E-value=5.9e-22  Score=159.35  Aligned_cols=160  Identities=16%  Similarity=0.062  Sum_probs=110.6

Q ss_pred             EEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCCh---------hhhhhhhhhhccCC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ---------ERFRTITTAYYRGA   76 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~---------~~~~~~~~~~~~~~   76 (205)
                      |+++|++|||||||+|+|.+........+..+.+.....+.+++  ..+.+|||+|.         +.+...+. .+..+
T Consensus       182 V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~a  258 (364)
T 2qtf_A          182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYS  258 (364)
T ss_dssp             EEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHH-GGGGS
T ss_pred             EEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHH-HHHhC
Confidence            89999999999999999998875433333333345556677777  45799999996         22333333 46789


Q ss_pred             cEEEEEEeCCChh--HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHh---CCcEEEEcCCCC
Q 028686           77 MGILLVYDVTDES--SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY---GIKFFETSAKTN  151 (205)
Q Consensus        77 d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~  151 (205)
                      |++++|+|++++.  ..+.+..|.+.+......+.|+++|+||+|+.+.......+.+..++...   +.+++++||+++
T Consensus       259 D~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g  338 (364)
T 2qtf_A          259 DALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKR  338 (364)
T ss_dssp             SEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTT
T ss_pred             CEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCC
Confidence            9999999999876  56666667666665544578999999999986422111112233344554   246899999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q 028686          152 LNVEQVFFSIARDIKQR  168 (205)
Q Consensus       152 ~gi~~~~~~i~~~~~~~  168 (205)
                      .|+++++++|.+.+...
T Consensus       339 ~gi~~L~~~I~~~l~~~  355 (364)
T 2qtf_A          339 TNLELLRDKIYQLATQL  355 (364)
T ss_dssp             BSHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHhccc
Confidence            99999999999877654

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.89  E-value=2.1e-22  Score=161.12  Aligned_cols=133  Identities=20%  Similarity=0.225  Sum_probs=106.9

Q ss_pred             cceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCC----------hhHHHHHHHHHHHHHh
Q 028686           34 TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----------ESSFNNIRNWIRNIEQ  103 (205)
Q Consensus        34 ~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~  103 (205)
                      +|.|..  ...+.+++  +.+.+||++|++.++.+|..++++++++|||||+++          ..++.+...|+..+..
T Consensus       179 ~T~Gi~--~~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~  254 (353)
T 1cip_A          179 KTTGIV--ETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN  254 (353)
T ss_dssp             CCCSEE--EEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred             ceeceE--EEEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHc
Confidence            345533  34455554  789999999999999999999999999999999999          5679999889988876


Q ss_pred             hc-CCCCcEEEEEeCCCCCCCC--------------CccCHHHHHHHHH-----------HhCCcEEEEcCCCCCCHHHH
Q 028686          104 HA-SDNVNKVLVGNKADMDESK--------------RAVPTSKGQALAD-----------EYGIKFFETSAKTNLNVEQV  157 (205)
Q Consensus       104 ~~-~~~~piiiv~nK~Dl~~~~--------------~~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~gi~~~  157 (205)
                      .. ..++|++|++||.|+....              ..+..+++..++.           ..++.++++||+++.||+++
T Consensus       255 ~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~v  334 (353)
T 1cip_A          255 NKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFV  334 (353)
T ss_dssp             CGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHH
T ss_pred             CccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHH
Confidence            43 2679999999999984311              1356788888876           34678999999999999999


Q ss_pred             HHHHHHHHHHHhc
Q 028686          158 FFSIARDIKQRLA  170 (205)
Q Consensus       158 ~~~i~~~~~~~~~  170 (205)
                      |+++.+.+.+..-
T Consensus       335 F~~v~~~i~~~~l  347 (353)
T 1cip_A          335 FDAVTDVIIKNNL  347 (353)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999876543

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.88  E-value=3.1e-22  Score=164.91  Aligned_cols=156  Identities=15%  Similarity=0.061  Sum_probs=108.3

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCC-------------------------------CCCCcccceeeEEEEEEEEECCE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGS-------------------------------FTTSFITTIGIDFKIRTIELDGK   50 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~~~   50 (205)
                      ..++|+++|.+++|||||+++|++..                               ...+..+.++.+.....+..++ 
T Consensus        16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~-   94 (439)
T 3j2k_7           16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK-   94 (439)
T ss_pred             ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC-
Confidence            35899999999999999999996542                               1112224445555555555554 


Q ss_pred             EEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChh---HHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCC-
Q 028686           51 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR-  125 (205)
Q Consensus        51 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~Dl~~~~~-  125 (205)
                       ..+.+|||||+++|.......++.+|++|+|+|+++..   +|+...++.+.+......++| +++++||+|+...+. 
T Consensus        95 -~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~  173 (439)
T 3j2k_7           95 -KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS  173 (439)
T ss_pred             -eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchH
Confidence             57999999999999999999999999999999998853   222222223333322224577 899999999854221 


Q ss_pred             ----ccCHHHHHHHHHHhC------CcEEEEcCCCCCCHHHHHH
Q 028686          126 ----AVPTSKGQALADEYG------IKFFETSAKTNLNVEQVFF  159 (205)
Q Consensus       126 ----~~~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~~~~  159 (205)
                          ....+++..++...+      ++++++||++|.|++++++
T Consensus       174 ~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          174 NERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence                112334445555544      5799999999999999766

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.88  E-value=1.3e-21  Score=159.69  Aligned_cols=157  Identities=15%  Similarity=0.115  Sum_probs=114.1

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEE------------------------CCEEEEEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL------------------------DGKRIKLQIW   57 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~------------------------~~~~~~~~i~   57 (205)
                      ..++|+++|.+++|||||+++|.+.......    +  +.......                        ......+.+|
T Consensus         7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii   80 (403)
T 3sjy_A            7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKKL----G--YAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFI   80 (403)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHSCCCCSSS----E--EEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccc----C--ccccceeeccccccccceecccccccccccccccccceEEEE
Confidence            4589999999999999999999986432211    1  11111000                        1123679999


Q ss_pred             eCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC-ccCHHHHHHHH
Q 028686           58 DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-AVPTSKGQALA  136 (205)
Q Consensus        58 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~-~~~~~~~~~~~  136 (205)
                      ||||+++|.......+..+|++++|+|+++..++.....|+..+....  ..|+++++||+|+.+.+. ....+++.++.
T Consensus        81 DtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l  158 (403)
T 3sjy_A           81 DAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFT  158 (403)
T ss_dssp             ECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHH
T ss_pred             ECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998876777777777666543  258999999999965211 11122233333


Q ss_pred             HHh---CCcEEEEcCCCCCCHHHHHHHHHHHHH
Q 028686          137 DEY---GIKFFETSAKTNLNVEQVFFSIARDIK  166 (205)
Q Consensus       137 ~~~---~~~~~~~Sa~~~~gi~~~~~~i~~~~~  166 (205)
                      ...   +++++++||++|.|+++++++|.+.+.
T Consensus       159 ~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~  191 (403)
T 3sjy_A          159 KGTWAENVPIIPVSALHKINIDSLIEGIEEYIK  191 (403)
T ss_dssp             TTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HhhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence            222   478999999999999999999987653

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.88  E-value=4.8e-22  Score=157.03  Aligned_cols=134  Identities=20%  Similarity=0.222  Sum_probs=106.2

Q ss_pred             ccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCC----------ChhHHHHHHHHHHHHH
Q 028686           33 ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT----------DESSFNNIRNWIRNIE  102 (205)
Q Consensus        33 ~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~  102 (205)
                      .||+|.  ....+.+++  +.+.+||++|++.++.+|..++++++++|+|||++          +.+++.+...|+..+.
T Consensus       152 ~~TiGi--~~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~  227 (327)
T 3ohm_A          152 VPTTGI--IEYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTII  227 (327)
T ss_dssp             CCCCSE--EEEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHH
T ss_pred             CceeeE--EEEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHh
Confidence            455563  334455554  88999999999999999999999999999999664          6778888888888886


Q ss_pred             hhc-CCCCcEEEEEeCCCCCCCC---------------CccCHHHHHHHHH----------HhCCcEEEEcCCCCCCHHH
Q 028686          103 QHA-SDNVNKVLVGNKADMDESK---------------RAVPTSKGQALAD----------EYGIKFFETSAKTNLNVEQ  156 (205)
Q Consensus       103 ~~~-~~~~piiiv~nK~Dl~~~~---------------~~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~gi~~  156 (205)
                      ... ..++|+++++||+|+.+..               ..+..+++.+++.          ..++.++++||+++.||+.
T Consensus       228 ~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~  307 (327)
T 3ohm_A          228 TYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRF  307 (327)
T ss_dssp             TSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHH
T ss_pred             hhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHH
Confidence            543 2679999999999985421               1456778877742          3457889999999999999


Q ss_pred             HHHHHHHHHHHHhc
Q 028686          157 VFFSIARDIKQRLA  170 (205)
Q Consensus       157 ~~~~i~~~~~~~~~  170 (205)
                      +|..+.+.+.+.+-
T Consensus       308 vF~~v~~~Il~~~l  321 (327)
T 3ohm_A          308 VFAAVKDTILQLNL  321 (327)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhH
Confidence            99999999987543

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.88  E-value=3.1e-21  Score=157.74  Aligned_cols=158  Identities=14%  Similarity=0.088  Sum_probs=106.6

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCC---CCCCccc--ceeeEEEEEEEEE-------------C--C----EEEEEEEEe
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGS---FTTSFIT--TIGIDFKIRTIEL-------------D--G----KRIKLQIWD   58 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~---~~~~~~~--t~~~~~~~~~~~~-------------~--~----~~~~~~i~D   58 (205)
                      .++|+++|..++|||||+++|.+..   +..+..+  |....+....+..             +  +    ....+.+||
T Consensus         8 ~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD   87 (408)
T 1s0u_A            8 EVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVD   87 (408)
T ss_dssp             CEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEE
T ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEE
Confidence            5899999999999999999998543   3333334  4444444433321             1  1    136899999


Q ss_pred             CCChhhhhhhhhhhccCCcEEEEEEeCCC----hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC-ccCHHHHH
Q 028686           59 TAGQERFRTITTAYYRGAMGILLVYDVTD----ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-AVPTSKGQ  133 (205)
Q Consensus        59 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~-~~~~~~~~  133 (205)
                      +||+++|.......+..+|++|+|+|+++    +++++.+..|    ...  ...|+++++||+|+.+.+. ....+++.
T Consensus        88 tPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~l--~~~~iivv~NK~Dl~~~~~~~~~~~~i~  161 (408)
T 1s0u_A           88 SPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL----EIL--GIDKIIIVQNKIDLVDEKQAEENYEQIK  161 (408)
T ss_dssp             CSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH----HHT--TCCCEEEEEECTTSSCTTTTTTHHHHHH
T ss_pred             CCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH----HHc--CCCeEEEEEEccCCCCHHHHHHHHHHHH
Confidence            99999998888888889999999999984    5566655432    222  2258999999999976432 23356666


Q ss_pred             HHHHH---hCCcEEEEcCCCCCCHHHHHHHHHHHHH
Q 028686          134 ALADE---YGIKFFETSAKTNLNVEQVFFSIARDIK  166 (205)
Q Consensus       134 ~~~~~---~~~~~~~~Sa~~~~gi~~~~~~i~~~~~  166 (205)
                      +++..   .+++++++||++|.|+++++++|.+.+.
T Consensus       162 ~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~  197 (408)
T 1s0u_A          162 EFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP  197 (408)
T ss_dssp             HHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred             HHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            76664   3578999999999999999999987654

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.88  E-value=1e-22  Score=168.22  Aligned_cols=153  Identities=20%  Similarity=0.166  Sum_probs=103.9

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhh--------hhc
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITT--------AYY   73 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~--------~~~   73 (205)
                      .++|+++|.+|+|||||+|+|++.... ....++++.++....+.+++  ..+.+|||||..++...+.        .++
T Consensus       224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~~  301 (462)
T 3geh_A          224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQAA  301 (462)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CCC
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence            478999999999999999999987542 33345555555555667777  5589999999866544333        357


Q ss_pred             cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCC
Q 028686           74 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN  153 (205)
Q Consensus        74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  153 (205)
                      ..+|++++|+|++++.+... ..|+..+.     +.|+++|+||+|+.+... ..  ....+.  .+.+++++||++|.|
T Consensus       302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~-~~--~~~~~~--~~~~~i~iSAktg~G  370 (462)
T 3geh_A          302 NTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQL-IT--SLEYPE--NITQIVHTAAAQKQG  370 (462)
T ss_dssp             CSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGG-ST--TCCCCT--TCCCEEEEBTTTTBS
T ss_pred             hcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchh-hH--HHHHhc--cCCcEEEEECCCCCC
Confidence            88999999999998766554 34555542     379999999999965321 11  111111  346899999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 028686          154 VEQVFFSIARDIKQR  168 (205)
Q Consensus       154 i~~~~~~i~~~~~~~  168 (205)
                      +++++++|.+.+...
T Consensus       371 i~eL~~~i~~~~~~~  385 (462)
T 3geh_A          371 IDSLETAILEIVQTG  385 (462)
T ss_dssp             HHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999887543

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.87  E-value=1.1e-21  Score=166.35  Aligned_cols=157  Identities=25%  Similarity=0.309  Sum_probs=110.2

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCC--CCC-----Cc------ccceeeEEEEEE--EEE---CCEEEEEEEEeCCChhh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGS--FTT-----SF------ITTIGIDFKIRT--IEL---DGKRIKLQIWDTAGQER   64 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~--~~~-----~~------~~t~~~~~~~~~--~~~---~~~~~~~~i~D~~g~~~   64 (205)
                      ..+|+++|..++|||||+++|+...  +..     .+      ....|.+.....  +.+   ++..+.+.+|||||+.+
T Consensus         4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d   83 (599)
T 3cb4_D            4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD   83 (599)
T ss_dssp             EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence            4689999999999999999998732  111     00      011222222222  222   45678999999999999


Q ss_pred             hhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC---
Q 028686           65 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI---  141 (205)
Q Consensus        65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---  141 (205)
                      |...+...++.+|++|+|+|+++..++.....|...+.    .++|+++++||+|+.+.+   ..+...++...++.   
T Consensus        84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~---~~~v~~ei~~~lg~~~~  156 (599)
T 3cb4_D           84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD---PERVAEEIEDIVGIDAT  156 (599)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC---HHHHHHHHHHHTCCCCT
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc---HHHHHHHHHHHhCCCcc
Confidence            99999999999999999999998766666666665543    468999999999996532   23334566666675   


Q ss_pred             cEEEEcCCCCCCHHHHHHHHHHHHH
Q 028686          142 KFFETSAKTNLNVEQVFFSIARDIK  166 (205)
Q Consensus       142 ~~~~~Sa~~~~gi~~~~~~i~~~~~  166 (205)
                      .++++||++|.|++++|+++.+.+.
T Consensus       157 ~vi~vSAktg~GI~~Ll~~I~~~lp  181 (599)
T 3cb4_D          157 DAVRCSAKTGVGVQDVLERLVRDIP  181 (599)
T ss_dssp             TCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred             eEEEeecccCCCchhHHHHHhhcCC
Confidence            4899999999999999999988764

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.87  E-value=6.4e-22  Score=152.50  Aligned_cols=163  Identities=13%  Similarity=0.093  Sum_probs=108.3

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCC-CCCCcccc-eeeEEEEEEEEECCEEEEEEEEeCCChhhhhh-----------h
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGS-FTTSFITT-IGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-----------I   68 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~-~~~~~~~t-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~   68 (205)
                      ..++|+|+|.+|||||||+++|++.. +...+.++ .+.+.....+.+++  ..+.+|||||..++..           .
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~~   98 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQRC   98 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence            35899999999999999999999887 44444343 33344444555666  4689999999865432           2


Q ss_pred             hhhhccCCcEEEEEEeCCChhH-HHHHHHHHHHHHhhcCCCCcEEEEEe-CCCCCCCCCccCH-------HHHHHHHHHh
Q 028686           69 TTAYYRGAMGILLVYDVTDESS-FNNIRNWIRNIEQHASDNVNKVLVGN-KADMDESKRAVPT-------SKGQALADEY  139 (205)
Q Consensus        69 ~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piiiv~n-K~Dl~~~~~~~~~-------~~~~~~~~~~  139 (205)
                      ...+++.+|++++|+|+++... ...+..|+..+.... ...|+++++| |+|+...  .+..       ++++.++...
T Consensus        99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~  175 (260)
T 2xtp_A           99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGG--SLMDYMHDSDNKALSKLVAAC  175 (260)
T ss_dssp             HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTC--CHHHHHHHCCCHHHHHHHHHT
T ss_pred             HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCc--cHHHHHHhcchHHHHHHHHHh
Confidence            2336788999999999986222 222323333332211 1356776666 9999642  2221       3344566665


Q ss_pred             CCcE-----EEEcCCCCCCHHHHHHHHHHHHHHHh
Q 028686          140 GIKF-----FETSAKTNLNVEQVFFSIARDIKQRL  169 (205)
Q Consensus       140 ~~~~-----~~~Sa~~~~gi~~~~~~i~~~~~~~~  169 (205)
                      +..+     +++||+++.|++++|+++.+.+....
T Consensus       176 ~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~  210 (260)
T 2xtp_A          176 GGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN  210 (260)
T ss_dssp             TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence            5332     68999999999999999999887643

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.87  E-value=7.1e-21  Score=144.93  Aligned_cols=162  Identities=16%  Similarity=0.143  Sum_probs=109.4

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCccc--ceeeEEEEEEEEECCEEEEEEEEeCCCh-----------hhhhhh
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFIT--TIGIDFKIRTIELDGKRIKLQIWDTAGQ-----------ERFRTI   68 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~i~D~~g~-----------~~~~~~   68 (205)
                      ..++|+|+|.+|||||||+++|++..+.....+  +.+.+.....+.+++  ..+.+|||||.           ..+...
T Consensus        28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~  105 (239)
T 3lxx_A           28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEIIRC  105 (239)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence            358999999999999999999999887554444  334444555566666  46899999993           334455


Q ss_pred             hhhhccCCcEEEEEEeCCChhH--HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccC------HHHHHHHHHHhC
Q 028686           69 TTAYYRGAMGILLVYDVTDESS--FNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP------TSKGQALADEYG  140 (205)
Q Consensus        69 ~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~------~~~~~~~~~~~~  140 (205)
                      +...++.+|++++|+|+++...  ...+..+...+...  ...|+++|+||+|+... ..+.      .+.++.+....+
T Consensus       106 ~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~-~~~~~~i~~~~~~l~~l~~~~~  182 (239)
T 3lxx_A          106 ILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGD-TNLHDYLREAPEDIQDLMDIFG  182 (239)
T ss_dssp             HHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC-------------CHHHHHHHHHHS
T ss_pred             HHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCc-ccHHHHHHhchHHHHHHHHHcC
Confidence            5566678999999999876432  22232233322222  23699999999998642 2121      246778888888


Q ss_pred             CcEEEEcCCCC-----CCHHHHHHHHHHHHHHH
Q 028686          141 IKFFETSAKTN-----LNVEQVFFSIARDIKQR  168 (205)
Q Consensus       141 ~~~~~~Sa~~~-----~gi~~~~~~i~~~~~~~  168 (205)
                      ..++.++...+     .++.++|..+.+.+.+.
T Consensus       183 ~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~  215 (239)
T 3lxx_A          183 DRYCALNNKATGAEQEAQRAQLLGLIQRVVREN  215 (239)
T ss_dssp             SSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CEEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence            88888877654     68899999888877653

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.87  E-value=4.3e-21  Score=158.25  Aligned_cols=160  Identities=20%  Similarity=0.123  Sum_probs=108.0

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhh------------h
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI------------T   69 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------------~   69 (205)
                      .++|+++|++|||||||+|+|++.... ....++++.+.....+.+++.  .+.+|||+|..+....            .
T Consensus       180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~  257 (439)
T 1mky_A          180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYRV  257 (439)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHHH
Confidence            479999999999999999999987642 233344444555566777875  5789999997533221            1


Q ss_pred             hhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHH-HHHH----HhCCcEE
Q 028686           70 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ-ALAD----EYGIKFF  144 (205)
Q Consensus        70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~-~~~~----~~~~~~~  144 (205)
                      ..++..+|++++|+|+++..+..+. .+...+..   .+.|+++|+||+|+.+. .....++.. .+..    ..+++++
T Consensus       258 ~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  332 (439)
T 1mky_A          258 VDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVH-REKRYDEFTKLFREKLYFIDYSPLI  332 (439)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTT-GGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCc-hhhHHHHHHHHHHHHhccCCCCcEE
Confidence            2356789999999999886665542 22333332   46899999999999652 223333332 2222    2357899


Q ss_pred             EEcCCCCCCHHHHHHHHHHHHHHHh
Q 028686          145 ETSAKTNLNVEQVFFSIARDIKQRL  169 (205)
Q Consensus       145 ~~Sa~~~~gi~~~~~~i~~~~~~~~  169 (205)
                      ++||++|.|++++|+.+.+.+..+.
T Consensus       333 ~~SA~~g~gv~~l~~~i~~~~~~~~  357 (439)
T 1mky_A          333 FTSADKGWNIDRMIDAMNLAYASYT  357 (439)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             EEECCCCCCHHHHHHHHHHHHHhhc
Confidence            9999999999999999998887654

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.87  E-value=3.9e-24  Score=178.95  Aligned_cols=160  Identities=18%  Similarity=0.135  Sum_probs=116.2

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      +..+|+++|.+++|||||+++|.+..+.....++++.++....+.+++ ...+.+|||||++.|..++..++..+|++++
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            357899999999999999999998766555555555444444444421 1368999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHH---HHHh--CCcEEEEcCCCCCCHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQAL---ADEY--GIKFFETSAKTNLNVEQ  156 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~---~~~~--~~~~~~~Sa~~~~gi~~  156 (205)
                      |+|+++......    .+.+......++|+++++||+|+.+.......++...+   +..+  .++++++||++|.|+++
T Consensus        82 VVDa~dg~~~qt----~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e  157 (537)
T 3izy_P           82 VVAADDGVMKQT----VESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA  157 (537)
T ss_dssp             ECBSSSCCCHHH----HHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred             EEECCCCccHHH----HHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence            999998543322    23333333356899999999999754433333333332   1122  25899999999999999


Q ss_pred             HHHHHHHHHH
Q 028686          157 VFFSIARDIK  166 (205)
Q Consensus       157 ~~~~i~~~~~  166 (205)
                      +|+++...+.
T Consensus       158 Lle~I~~l~~  167 (537)
T 3izy_P          158 LAEATIALAE  167 (537)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHhhh
Confidence            9999987764

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.87  E-value=2.7e-21  Score=163.71  Aligned_cols=157  Identities=22%  Similarity=0.297  Sum_probs=111.8

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCC--CCC-----Ccccc------eeeEEE--EEEEEE---CCEEEEEEEEeCCChhh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGS--FTT-----SFITT------IGIDFK--IRTIEL---DGKRIKLQIWDTAGQER   64 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~--~~~-----~~~~t------~~~~~~--~~~~~~---~~~~~~~~i~D~~g~~~   64 (205)
                      ..+|+++|..++|||||+++|+...  +..     ....+      .|.+..  ...+.+   ++..+.+.+|||||+.+
T Consensus         6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d   85 (600)
T 2ywe_A            6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD   85 (600)
T ss_dssp             EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence            4689999999999999999998631  111     00000      111111  111222   45568899999999999


Q ss_pred             hhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC---
Q 028686           65 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI---  141 (205)
Q Consensus        65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---  141 (205)
                      |.......++.+|++++|+|+++..++.....|.....    .++|+++++||+|+.+.+   ..+...++...+++   
T Consensus        86 F~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~---~~~v~~el~~~lg~~~~  158 (600)
T 2ywe_A           86 FSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD---VDRVKKQIEEVLGLDPE  158 (600)
T ss_dssp             GHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC---HHHHHHHHHHTSCCCGG
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC---HHHHHHHHHHhhCCCcc
Confidence            99888999999999999999999877766666665543    469999999999996532   22334556666665   


Q ss_pred             cEEEEcCCCCCCHHHHHHHHHHHHH
Q 028686          142 KFFETSAKTNLNVEQVFFSIARDIK  166 (205)
Q Consensus       142 ~~~~~Sa~~~~gi~~~~~~i~~~~~  166 (205)
                      +++++||++|.|++++|+++.+.+.
T Consensus       159 ~vi~vSAktg~GI~~Lle~I~~~lp  183 (600)
T 2ywe_A          159 EAILASAKEGIGIEEILEAIVNRIP  183 (600)
T ss_dssp             GCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             cEEEEEeecCCCchHHHHHHHHhcc
Confidence            4899999999999999999987764

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.86  E-value=2.1e-22  Score=156.42  Aligned_cols=160  Identities=16%  Similarity=0.161  Sum_probs=93.9

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCC-CCc-------ccceeeEEEEEEEEECCEEEEEEEEeCCChh-------hhh
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFT-TSF-------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQE-------RFR   66 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~-------~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~-------~~~   66 (205)
                      ..++|+|+|.+|+|||||+|+|++.... ..+       .+|.+.+.....+..++..+.+.+|||||..       .+.
T Consensus         7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~   86 (274)
T 3t5d_A            7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ   86 (274)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence            3589999999999999999998876643 333       5667777776666666766799999999973       122


Q ss_pred             hhh-------hhhcc-------------CCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC-C
Q 028686           67 TIT-------TAYYR-------------GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK-R  125 (205)
Q Consensus        67 ~~~-------~~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-~  125 (205)
                      .+.       ..++.             .+|+++++++.+...-...-..++..+..    ++|+++|+||+|+.... .
T Consensus        87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~e~  162 (274)
T 3t5d_A           87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPEEC  162 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHHHH
Confidence            222       22222             37789999877652211112234444433    69999999999985311 1


Q ss_pred             ccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHHHH
Q 028686          126 AVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI  165 (205)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~  165 (205)
                      ....+.+.+.....+++++++|+.++.|+++++++|.+.+
T Consensus       163 ~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          163 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred             HHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence            1112334445556789999999999999999998887643

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.86  E-value=7.3e-21  Score=155.64  Aligned_cols=158  Identities=16%  Similarity=0.115  Sum_probs=112.2

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCC---CCCCccc--ceeeEEEEEEEEE-------------C--C----EEEEEEEEe
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGS---FTTSFIT--TIGIDFKIRTIEL-------------D--G----KRIKLQIWD   58 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~---~~~~~~~--t~~~~~~~~~~~~-------------~--~----~~~~~~i~D   58 (205)
                      .++|+++|..++|||||+++|.+..   +..+..+  |....+....+..             +  +    ....+.+||
T Consensus        10 ~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD   89 (410)
T 1kk1_A           10 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFID   89 (410)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEE
Confidence            4899999999999999999998643   2333334  4444444433321             1  1    136799999


Q ss_pred             CCChhhhhhhhhhhccCCcEEEEEEeCCC----hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC-ccCHHHHH
Q 028686           59 TAGQERFRTITTAYYRGAMGILLVYDVTD----ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-AVPTSKGQ  133 (205)
Q Consensus        59 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~-~~~~~~~~  133 (205)
                      |||+++|.......+..+|++|+|+|+++    +++.+.+..|    ...  ...|+++++||+|+.+.+. ....+++.
T Consensus        90 tPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~~--~~~~iivviNK~Dl~~~~~~~~~~~~i~  163 (410)
T 1kk1_A           90 APGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL----QII--GQKNIIIAQNKIELVDKEKALENYRQIK  163 (410)
T ss_dssp             CSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH----HHH--TCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH----HHc--CCCcEEEEEECccCCCHHHHHHHHHHHH
Confidence            99999998887778889999999999984    4566555432    222  1258999999999965221 12234455


Q ss_pred             HHHHH---hCCcEEEEcCCCCCCHHHHHHHHHHHHH
Q 028686          134 ALADE---YGIKFFETSAKTNLNVEQVFFSIARDIK  166 (205)
Q Consensus       134 ~~~~~---~~~~~~~~Sa~~~~gi~~~~~~i~~~~~  166 (205)
                      +++..   .+++++++||++|.|+++++++|.+.+.
T Consensus       164 ~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~  199 (410)
T 1kk1_A          164 EFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  199 (410)
T ss_dssp             HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            55554   3579999999999999999999987654

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.86  E-value=2.1e-21  Score=161.81  Aligned_cols=151  Identities=14%  Similarity=0.072  Sum_probs=96.9

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCC--CC-----------------------------CCcccceeeEEEEEEEEECCE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGS--FT-----------------------------TSFITTIGIDFKIRTIELDGK   50 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~--~~-----------------------------~~~~~t~~~~~~~~~~~~~~~   50 (205)
                      ..+||+++|.+++|||||+++|++..  +.                             .+..+.+..+.....+..  .
T Consensus        32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--~  109 (483)
T 3p26_A           32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST--H  109 (483)
T ss_dssp             CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC--S
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec--C
Confidence            45899999999999999999997652  11                             011112222222223333  3


Q ss_pred             EEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHH------HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC
Q 028686           51 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNN------IRNWIRNIEQHASDNVNKVLVGNKADMDESK  124 (205)
Q Consensus        51 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~------~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~  124 (205)
                      ...+.+|||||+++|......+++.+|++|+|+|+++.+++..      ....+..+.. . ...|+++|+||+|+.+. 
T Consensus       110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~-~~~~iIvviNK~Dl~~~-  186 (483)
T 3p26_A          110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-L-GIHNLIIAMNKMDNVDW-  186 (483)
T ss_dssp             SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-T-TCCCEEEEEECGGGGTT-
T ss_pred             CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-c-CCCcEEEEEECcCcccc-
Confidence            4679999999999999999999999999999999998754432      1112222222 1 22469999999999652 


Q ss_pred             CccCHHH----HHHHHHHh-----CCcEEEEcCCCCCCHHHH
Q 028686          125 RAVPTSK----GQALADEY-----GIKFFETSAKTNLNVEQV  157 (205)
Q Consensus       125 ~~~~~~~----~~~~~~~~-----~~~~~~~Sa~~~~gi~~~  157 (205)
                      .....++    +..+....     +++++++||++|.|++++
T Consensus       187 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el  228 (483)
T 3p26_A          187 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  228 (483)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence            2222232    33333333     368999999999999853

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.86  E-value=2.2e-22  Score=165.71  Aligned_cols=155  Identities=17%  Similarity=0.160  Sum_probs=106.2

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhC--CCCCCc-----------------------------ccceeeEEEEEEEEECCE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDG--SFTTSF-----------------------------ITTIGIDFKIRTIELDGK   50 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~--~~~~~~-----------------------------~~t~~~~~~~~~~~~~~~   50 (205)
                      ..++|+++|.+++|||||+++|++.  .+....                             .+.++.+.....+...  
T Consensus         5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~--   82 (435)
T 1jny_A            5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK--   82 (435)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS--
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC--
Confidence            4589999999999999999999874  232110                             1222223333333333  


Q ss_pred             EEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhh----cCCCC-cEEEEEeCCCCCCCCC
Q 028686           51 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQH----ASDNV-NKVLVGNKADMDESKR  125 (205)
Q Consensus        51 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~-piiiv~nK~Dl~~~~~  125 (205)
                      ...+.+|||||+++|......++..+|++|+|+|+++ .+|+.+..|......+    ...++ |+++++||+|+.+...
T Consensus        83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~  161 (435)
T 1jny_A           83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPY  161 (435)
T ss_dssp             SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTT
T ss_pred             CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccc
Confidence            3679999999999999989999999999999999998 6777554333322221    11244 6899999999965221


Q ss_pred             -----ccCHHHHHHHHHHhC-----CcEEEEcCCCCCCHHHHHH
Q 028686          126 -----AVPTSKGQALADEYG-----IKFFETSAKTNLNVEQVFF  159 (205)
Q Consensus       126 -----~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~~~  159 (205)
                           ....+++..++...+     ++++++||++|.|+.+++.
T Consensus       162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          162 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence                 122455667777665     6799999999999986654

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.86  E-value=3.1e-22  Score=165.84  Aligned_cols=179  Identities=17%  Similarity=0.129  Sum_probs=110.7

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCC--------hhhhhhhhhhh
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG--------QERFRTITTAY   72 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g--------~~~~~~~~~~~   72 (205)
                      |...+|+|+|.+|||||||+|+|.+..+. ....+.|.+.......+......+.+|||||        ++.+......+
T Consensus        21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~   99 (456)
T 4dcu_A           21 MGKPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA   99 (456)
T ss_dssp             --CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence            56679999999999999999999987653 1223344444444445544456799999999        77788888899


Q ss_pred             ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC-CcEEEEcCCCC
Q 028686           73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTN  151 (205)
Q Consensus        73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~  151 (205)
                      ++.+|++++|+|..+.-+  ....|+..+...  .+.|+++|+||+|+.+..     +...++. ..+ ...+++||++|
T Consensus       100 ~~~ad~il~VvD~~~~~~--~~d~~l~~~l~~--~~~pvilV~NK~D~~~~~-----~~~~e~~-~lg~~~~~~iSA~~g  169 (456)
T 4dcu_A          100 MDEADVIIFMVNGREGVT--AADEEVAKILYR--TKKPVVLAVNKLDNTEMR-----ANIYDFY-SLGFGEPYPISGTHG  169 (456)
T ss_dssp             HHHCSEEEEEEESSSCSC--HHHHHHHHHHTT--CCSCEEEEEECC--------------CCSG-GGSSSSEEECCTTTC
T ss_pred             HhhCCEEEEEEeCCCCCC--hHHHHHHHHHHH--cCCCEEEEEECccchhhh-----hhHHHHH-HcCCCceEEeecccc
Confidence            999999999999876332  222333333332  569999999999985421     1111111 223 25679999999


Q ss_pred             CCHHHHHHHHHHHHHHHhcccCCCCCCccccccCCCCCCC
Q 028686          152 LNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGG  191 (205)
Q Consensus       152 ~gi~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (205)
                      .|+.++++.+.+.+.... .........++.+...+..++
T Consensus       170 ~gv~~L~~~i~~~l~~~~-~~~~~~~~~ki~ivG~~~vGK  208 (456)
T 4dcu_A          170 LGLGDLLDAVAEHFKNIP-ETKYNEEVIQFCLIGRPNVGK  208 (456)
T ss_dssp             TTHHHHHHHHHTTGGGSC-SSCCCTTCEEEEEECSTTSSH
T ss_pred             cchHHHHHHHHhhccccc-ccccccccceeEEecCCCCCH
Confidence            999999999987664321 111223334455555444443

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.86  E-value=7.9e-22  Score=145.02  Aligned_cols=111  Identities=17%  Similarity=0.261  Sum_probs=86.4

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCC---CcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccC----
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTT---SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG----   75 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~----   75 (205)
                      .++|+++|++|||||||+++|.+..+..   .+.++.+.++         ..+.+.+||+||++.+...+..++..    
T Consensus        48 ~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~  118 (193)
T 2ged_A           48 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRAKF  118 (193)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHHHGGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHhhccc
Confidence            4799999999999999999999987543   1222222111         33578999999999888777777766    


Q ss_pred             CcEEEEEEeCC-ChhHHHHHHHHHHHHHhhc----CCCCcEEEEEeCCCCCC
Q 028686           76 AMGILLVYDVT-DESSFNNIRNWIRNIEQHA----SDNVNKVLVGNKADMDE  122 (205)
Q Consensus        76 ~d~~i~v~d~~-~~~s~~~~~~~~~~i~~~~----~~~~piiiv~nK~Dl~~  122 (205)
                      +|++++|||++ +++++..+..|+..+....    ..++|+++|+||+|+.+
T Consensus       119 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  170 (193)
T 2ged_A          119 VKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT  170 (193)
T ss_dssp             EEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred             CCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcC
Confidence            89999999999 8999999998888876542    35799999999999965

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.86  E-value=2.4e-22  Score=161.70  Aligned_cols=163  Identities=21%  Similarity=0.274  Sum_probs=93.1

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCC-CCCCc--------ccceeeEEEEEEEEECCEEEEEEEEeCCCh-------hhhh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGS-FTTSF--------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQ-------ERFR   66 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~-~~~~~--------~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~~~   66 (205)
                      .++|+|+|++|+|||||+++|++.. +...+        .+|.+..+....+..++..+.+.+|||||.       +.+.
T Consensus        37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~  116 (361)
T 2qag_A           37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK  116 (361)
T ss_dssp             EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred             CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence            4789999999999999999987654 22222        245555555455555677788999999998       5566


Q ss_pred             hhhh-------hhccCCcE-----------EEEEEeCCC-hhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCCCc
Q 028686           67 TITT-------AYYRGAMG-----------ILLVYDVTD-ESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRA  126 (205)
Q Consensus        67 ~~~~-------~~~~~~d~-----------~i~v~d~~~-~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~  126 (205)
                      .+..       .+++.+++           .+++|++++ ..++..+. .|+..+    ..++|+++|+||+|+... ..
T Consensus       117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~-~e  191 (361)
T 2qag_A          117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTL-KE  191 (361)
T ss_dssp             CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCH-HH
T ss_pred             HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCH-HH
Confidence            6554       55544332           235555554 44555554 244433    257999999999998642 22


Q ss_pred             cCH--HHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHHHHHHHhcc
Q 028686          127 VPT--SKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLAD  171 (205)
Q Consensus       127 ~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~~  171 (205)
                      +..  +++..++..++++++++||+++.+ ++.|.++.+.+.+..+.
T Consensus       192 v~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~  237 (361)
T 2qag_A          192 RERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIPF  237 (361)
T ss_dssp             HHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCSC
T ss_pred             HHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCCC
Confidence            222  456666777789999999999999 99999999988776553

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.85  E-value=1.1e-20  Score=148.58  Aligned_cols=156  Identities=18%  Similarity=0.139  Sum_probs=106.3

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCC-CcccceeeEEEEEEEEECCEEEEEEEEeCCChh-h--------hhhhhhhh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE-R--------FRTITTAY   72 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~-~--------~~~~~~~~   72 (205)
                      ..+|+++|++|+|||||+|+|++..+.. ...+....+.....+..++  ..+.+|||||.. .        +......+
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~   85 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASSS   85 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence            3579999999999999999999987531 1222111111222233344  578999999986 2        33344667


Q ss_pred             ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC-cEEEEcCCCC
Q 028686           73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTN  151 (205)
Q Consensus        73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  151 (205)
                      ++.+|++++|+|.++   +.....|+.....  ..+.|+++++||.|+.. ......+.+..+...++. .++++||+++
T Consensus        86 l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~-~~~~~~~~l~~l~~~~~~~~~i~iSA~~g  159 (301)
T 1ega_A           86 IGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNVQ-EKADLLPHLQFLASQMNFLDIVPISAETG  159 (301)
T ss_dssp             CCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTCC-CHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred             HhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccCc-cHHHHHHHHHHHHHhcCcCceEEEECCCC
Confidence            889999999999976   2222233332222  24689999999999854 122233455566666675 7999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 028686          152 LNVEQVFFSIARDIK  166 (205)
Q Consensus       152 ~gi~~~~~~i~~~~~  166 (205)
                      .|++++++.+.+.+.
T Consensus       160 ~~v~~l~~~i~~~l~  174 (301)
T 1ega_A          160 LNVDTIAAIVRKHLP  174 (301)
T ss_dssp             TTHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHhCC
Confidence            999999999987653

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.85  E-value=3e-21  Score=159.01  Aligned_cols=152  Identities=19%  Similarity=0.095  Sum_probs=103.2

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCC--CCC----------cccce---------------------eeEEEEEEEEECC
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSF--TTS----------FITTI---------------------GIDFKIRTIELDG   49 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~--~~~----------~~~t~---------------------~~~~~~~~~~~~~   49 (205)
                      .++|+++|.+++|||||+++|++...  ...          ..++.                     ..+.....+..++
T Consensus        24 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~  103 (434)
T 1zun_B           24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAK  103 (434)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSS
T ss_pred             ceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCC
Confidence            48999999999999999999987541  110          11111                     1111122233333


Q ss_pred             EEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCC-cEEEEEeCCCCCCCCCc--
Q 028686           50 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNV-NKVLVGNKADMDESKRA--  126 (205)
Q Consensus        50 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-piiiv~nK~Dl~~~~~~--  126 (205)
                        ..+.+|||||+++|......++..+|++|+|+|+++... .....|+..+...   ++ |+++|+||+|+.+.+..  
T Consensus       104 --~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~~~~  177 (434)
T 1zun_B          104 --RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL---GIKHIVVAINKMDLNGFDERVF  177 (434)
T ss_dssp             --EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT---TCCEEEEEEECTTTTTSCHHHH
T ss_pred             --ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEEcCcCCcccHHHH
Confidence              578999999999998888888999999999999998532 2233344444332   34 58999999999652211  


Q ss_pred             -cCHHHHHHHHHHhC-----CcEEEEcCCCCCCHHHHHHH
Q 028686          127 -VPTSKGQALADEYG-----IKFFETSAKTNLNVEQVFFS  160 (205)
Q Consensus       127 -~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~~~~  160 (205)
                       ...+++..++...+     ++++++||++|.|+++++..
T Consensus       178 ~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~  217 (434)
T 1zun_B          178 ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER  217 (434)
T ss_dssp             HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred             HHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence             12345566677776     78999999999999985443

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.85  E-value=2.6e-20  Score=147.64  Aligned_cols=130  Identities=18%  Similarity=0.220  Sum_probs=102.2

Q ss_pred             cceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCC----------ChhHHHHHHHHHHHHHh
Q 028686           34 TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT----------DESSFNNIRNWIRNIEQ  103 (205)
Q Consensus        34 ~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~  103 (205)
                      +|.|...  ..+.++  .+.+.+||++|++.++.+|..++++++++|+|||++          +.+++.+...|+..+..
T Consensus       147 ~TiGi~~--~~~~~~--~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~  222 (340)
T 4fid_A          147 KTTGIHE--YDFVVK--DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMT  222 (340)
T ss_dssp             CCCSCEE--EEEESS--SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHH
T ss_pred             ceeeeEE--EEEEee--eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhh
Confidence            4455333  333443  478999999999999999999999999999999998          77889999888888876


Q ss_pred             hc-CCCCcEEEEEeCCCCCCC--------------CCccCHHHHHHHHH-Hh--------------------------CC
Q 028686          104 HA-SDNVNKVLVGNKADMDES--------------KRAVPTSKGQALAD-EY--------------------------GI  141 (205)
Q Consensus       104 ~~-~~~~piiiv~nK~Dl~~~--------------~~~~~~~~~~~~~~-~~--------------------------~~  141 (205)
                      .. ..++|++|++||.|+...              ......+++.+++. .+                          .+
T Consensus       223 ~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i  302 (340)
T 4fid_A          223 NEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKV  302 (340)
T ss_dssp             CGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEE
T ss_pred             hhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcce
Confidence            53 367999999999998431              11124566655542 33                          37


Q ss_pred             cEEEEcCCCCCCHHHHHHHHHHHHHH
Q 028686          142 KFFETSAKTNLNVEQVFFSIARDIKQ  167 (205)
Q Consensus       142 ~~~~~Sa~~~~gi~~~~~~i~~~~~~  167 (205)
                      .++++||++..+|+.+|..+.+.+.+
T Consensus       303 y~h~TsA~dt~nv~~vF~~v~~~Il~  328 (340)
T 4fid_A          303 YTNPTNATDGSNIKRVFMLAVDVIMK  328 (340)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999988

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.84  E-value=7.8e-21  Score=161.21  Aligned_cols=161  Identities=17%  Similarity=0.118  Sum_probs=110.3

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCC----cccceeeEEEEEEE------------EECCEEEEEEEEeCCChhhh
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTS----FITTIGIDFKIRTI------------ELDGKRIKLQIWDTAGQERF   65 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~----~~~t~~~~~~~~~~------------~~~~~~~~~~i~D~~g~~~~   65 (205)
                      +..+|+++|++++|||||+++|.+..+...    ..++.+..+.....            .++.....+.+|||||+++|
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            468999999999999999999987654321    22333322221110            00001124899999999999


Q ss_pred             hhhhhhhccCCcEEEEEEeCCC---hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCcc-----------CHH-
Q 028686           66 RTITTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAV-----------PTS-  130 (205)
Q Consensus        66 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~-----------~~~-  130 (205)
                      ..++...++.+|++|+|+|+++   +++++.+..    +..   .++|+++++||+|+.+.....           ..+ 
T Consensus        84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~  156 (594)
T 1g7s_A           84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ  156 (594)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence            9999999999999999999999   777766542    222   469999999999996421100           000 


Q ss_pred             ----------HHHHHHHHhC---------------CcEEEEcCCCCCCHHHHHHHHHHHHHHHh
Q 028686          131 ----------KGQALADEYG---------------IKFFETSAKTNLNVEQVFFSIARDIKQRL  169 (205)
Q Consensus       131 ----------~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  169 (205)
                                +......+.+               ++++++||++|.|++++++++...+....
T Consensus       157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~  220 (594)
T 1g7s_A          157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYL  220 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccc
Confidence                      1111111111               47999999999999999999998776443

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.84  E-value=4.2e-22  Score=165.28  Aligned_cols=154  Identities=16%  Similarity=0.076  Sum_probs=94.9

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhC--CCCC-----------------------------CcccceeeEEEEEEEEECCEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDG--SFTT-----------------------------SFITTIGIDFKIRTIELDGKR   51 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~--~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~   51 (205)
                      .++|+++|..++|||||+++|+..  .+..                             +....++.+.....+.+++  
T Consensus        43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~--  120 (467)
T 1r5b_A           43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH--  120 (467)
T ss_dssp             EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS--
T ss_pred             eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC--
Confidence            479999999999999999999752  1210                             0011111222222344444  


Q ss_pred             EEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCCh---hHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCC--
Q 028686           52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE---SSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR--  125 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~Dl~~~~~--  125 (205)
                      ..+.+|||||+++|.......+..+|++|+|+|+++.   ++|+...+|.+.+......++| +++++||+|+.+...  
T Consensus       121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~  200 (467)
T 1r5b_A          121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE  200 (467)
T ss_dssp             EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred             eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccH
Confidence            5789999999999998888889999999999999985   3554444444444433335687 999999999954221  


Q ss_pred             ---ccCHHHHHHHHHHh-------CCcEEEEcCCCCCCHHHHH
Q 028686          126 ---AVPTSKGQALADEY-------GIKFFETSAKTNLNVEQVF  158 (205)
Q Consensus       126 ---~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi~~~~  158 (205)
                         ....+++..++...       +++++++||++|.|+++++
T Consensus       201 ~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          201 ERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             HHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence               11233466666665       3569999999999998866

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.84  E-value=1.5e-21  Score=159.41  Aligned_cols=148  Identities=18%  Similarity=0.131  Sum_probs=101.6

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhC--------CCCCC-------cccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDG--------SFTTS-------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR   66 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~--------~~~~~-------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   66 (205)
                      ..++|+++|.+++|||||+++|++.        .+...       .....+.++......+......+.+|||||+++|.
T Consensus        10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~   89 (405)
T 2c78_A           10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI   89 (405)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHH
Confidence            4589999999999999999999873        11110       00011211222222333333678999999999998


Q ss_pred             hhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCC--ccCHHHHHHHHHHhC---
Q 028686           67 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR--AVPTSKGQALADEYG---  140 (205)
Q Consensus        67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~---  140 (205)
                      ......+..+|++|+|+|+++... .....|+..+..   .++| +++++||+|+.+...  +...+++.+++...+   
T Consensus        90 ~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~---~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~  165 (405)
T 2c78_A           90 KNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPG  165 (405)
T ss_dssp             HHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHH---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccc
Confidence            888889999999999999988643 344455555544   3578 889999999964111  112335566666665   


Q ss_pred             --CcEEEEcCCCCCC
Q 028686          141 --IKFFETSAKTNLN  153 (205)
Q Consensus       141 --~~~~~~Sa~~~~g  153 (205)
                        ++++++||++|.|
T Consensus       166 ~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          166 DEVPVIRGSALLALE  180 (405)
T ss_dssp             TTSCEEECCHHHHHH
T ss_pred             cCCCEEEccHHHhhh
Confidence              6899999999987

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.84  E-value=6.2e-21  Score=155.41  Aligned_cols=160  Identities=18%  Similarity=0.122  Sum_probs=107.5

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCC-------CCCC-------cccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhh
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGS-------FTTS-------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT   67 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~-------~~~~-------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~   67 (205)
                      ..+||+++|.+++|||||+++|++..       +...       .....+.+.......+......+.+|||||+++|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            45899999999999999999998741       1100       000112222222233333336789999999999988


Q ss_pred             hhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCC--ccCHHHHHHHHHHhC----
Q 028686           68 ITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR--AVPTSKGQALADEYG----  140 (205)
Q Consensus        68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~----  140 (205)
                      .....+..+|++|+|+|+++..... ...++..+..   .++| +++++||+|+.+...  +...+++.+++...+    
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~q-t~e~l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~  157 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQ-TREHLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE  157 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHH-HHHHHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence            8888999999999999999843222 2222333332   3588 689999999964111  112345666777665    


Q ss_pred             -CcEEEEcCCCCCC----------HHHHHHHHHHHH
Q 028686          141 -IKFFETSAKTNLN----------VEQVFFSIARDI  165 (205)
Q Consensus       141 -~~~~~~Sa~~~~g----------i~~~~~~i~~~~  165 (205)
                       ++++++||++|.|          ++++++.+.+.+
T Consensus       158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~  193 (397)
T 1d2e_A          158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (397)
T ss_dssp             TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence             5899999999764          778887776654

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.84  E-value=3.2e-22  Score=165.66  Aligned_cols=151  Identities=14%  Similarity=0.065  Sum_probs=102.6

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhC--CCCCC-----------------------------cccceeeEEEEEEEEECCE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDG--SFTTS-----------------------------FITTIGIDFKIRTIELDGK   50 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~--~~~~~-----------------------------~~~t~~~~~~~~~~~~~~~   50 (205)
                      ..++|+++|.+++|||||+++|++.  .+...                             ..+.+..+.....+..++ 
T Consensus         6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~-   84 (458)
T 1f60_A            6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK-   84 (458)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS-
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC-
Confidence            3589999999999999999999864  12110                             001122222222333333 


Q ss_pred             EEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChh---HHH---HHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCC
Q 028686           51 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SFN---NIRNWIRNIEQHASDNVN-KVLVGNKADMDES  123 (205)
Q Consensus        51 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~p-iiiv~nK~Dl~~~  123 (205)
                       ..+.+|||||+++|.......+..+|++|+|+|+++..   +|+   ....++..+..   .++| +++++||+|+.+.
T Consensus        85 -~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~~  160 (458)
T 1f60_A           85 -YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVKW  160 (458)
T ss_dssp             -EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGTT
T ss_pred             -ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEccccccC
Confidence             67999999999999998889999999999999999752   332   22222222222   3566 8999999999631


Q ss_pred             CC---ccCHHHHHHHHHHhC-----CcEEEEcCCCCCCHHHH
Q 028686          124 KR---AVPTSKGQALADEYG-----IKFFETSAKTNLNVEQV  157 (205)
Q Consensus       124 ~~---~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~  157 (205)
                      +.   ....+++..++...+     ++++++||++|.|+.++
T Consensus       161 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          161 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            11   122345566666665     68999999999999755

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.83  E-value=6.5e-23  Score=170.30  Aligned_cols=153  Identities=18%  Similarity=0.210  Sum_probs=107.7

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      +..+|+++|.+++|||||+++|.+..+.....++++.+.....+.+++  ..+.+|||||+++|..++...+..+|++++
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL   80 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVL   80 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence            457899999999999999999988665443333333222222333444  468999999999999999999999999999


Q ss_pred             EEeCCC---hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHH---HHHHHHhC--CcEEEEcCCCCCC
Q 028686           82 VYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG---QALADEYG--IKFFETSAKTNLN  153 (205)
Q Consensus        82 v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~---~~~~~~~~--~~~~~~Sa~~~~g  153 (205)
                      |+|+++   +++.+.+    ..+..   .++|+++++||+|+.+.+.....++.   ..+...++  ++++++||++|.|
T Consensus        81 VVda~~g~~~qT~e~l----~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~g  153 (501)
T 1zo1_I           81 VVAADDGVMPQTIEAI----QHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTG  153 (501)
T ss_dssp             EEETTTBSCTTTHHHH----HHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTT
T ss_pred             EeecccCccHHHHHHH----HHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccC
Confidence            999988   4444433    22222   46899999999999753211111110   01112222  6899999999999


Q ss_pred             HHHHHHHHHH
Q 028686          154 VEQVFFSIAR  163 (205)
Q Consensus       154 i~~~~~~i~~  163 (205)
                      ++++|+++..
T Consensus       154 I~eLle~I~~  163 (501)
T 1zo1_I          154 IDELLDAILL  163 (501)
T ss_dssp             CTTHHHHTTT
T ss_pred             cchhhhhhhh
Confidence            9999999874

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.83  E-value=7.5e-21  Score=153.30  Aligned_cols=147  Identities=9%  Similarity=0.008  Sum_probs=107.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEe
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   84 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   84 (205)
                      +|+++|.+++|||||+++|+      ....|....+  ..+..++  ..+.+|||||+++|.......++.+|++|+|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~~~--~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG------KKGTSSDITM--YNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS------EEEEESSSEE--EEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHH------hCCEEEEeeE--EEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            89999999999999999998      1122222222  2333333  569999999999998777788899999999999


Q ss_pred             CCChhHHHHHHHHHHHHHhhcCCCCcE-EEEEe-CCCCCCCCCcc--CHHHHHHHHHHhC---CcEEE--EcCCC---CC
Q 028686           85 VTDESSFNNIRNWIRNIEQHASDNVNK-VLVGN-KADMDESKRAV--PTSKGQALADEYG---IKFFE--TSAKT---NL  152 (205)
Q Consensus        85 ~~~~~s~~~~~~~~~~i~~~~~~~~pi-iiv~n-K~Dl~~~~~~~--~~~~~~~~~~~~~---~~~~~--~Sa~~---~~  152 (205)
                       +. ..+.....|+..+..   .++|. ++++| |+|+ +. ..+  ..+++++++...+   +++++  +||++   +.
T Consensus        93 -~~-g~~~qt~e~~~~~~~---~~i~~~ivvvNNK~Dl-~~-~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~  165 (370)
T 2elf_A           93 -PQ-GLDAHTGECIIALDL---LGFKHGIIALTRSDST-HM-HAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFE  165 (370)
T ss_dssp             -TT-CCCHHHHHHHHHHHH---TTCCEEEEEECCGGGS-CH-HHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTT
T ss_pred             -CC-CCcHHHHHHHHHHHH---cCCCeEEEEEEeccCC-CH-HHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCC
Confidence             43 345555666665544   35777 88899 9998 42 211  1245555555443   78999  99999   99


Q ss_pred             CHHHHHHHHHHHHHHH
Q 028686          153 NVEQVFFSIARDIKQR  168 (205)
Q Consensus       153 gi~~~~~~i~~~~~~~  168 (205)
                      |++++++.|.+.+...
T Consensus       166 gi~~L~~~l~~~~~~~  181 (370)
T 2elf_A          166 GVDELKARINEVAEKI  181 (370)
T ss_dssp             THHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhhcccc
Confidence            9999999999887654

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.83  E-value=1.6e-20  Score=157.54  Aligned_cols=114  Identities=15%  Similarity=0.071  Sum_probs=81.2

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCC------------------C----CcccceeeEEEEEEEEECCEEEEEEEEeCC
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFT------------------T----SFITTIGIDFKIRTIELDGKRIKLQIWDTA   60 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~------------------~----~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   60 (205)
                      ..+|+|+|.+|+|||||+++|+.....                  .    +..+..........+.+.+  +.+.+||||
T Consensus        13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liDTP   90 (528)
T 3tr5_A           13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLDTP   90 (528)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEECCC
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEECC
Confidence            468999999999999999999621100                  0    0001111112223344444  679999999


Q ss_pred             ChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686           61 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  122 (205)
Q Consensus        61 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~  122 (205)
                      |+.++......+++.+|++|+|+|+++..+......| ..+..   .++|+++|+||+|+..
T Consensus        91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~---~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL---RHTPIMTFINKMDRDT  148 (528)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT---TTCCEEEEEECTTSCC
T ss_pred             CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEeCCCCcc
Confidence            9999999999999999999999999987665555444 33332   4689999999999864

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.82  E-value=1.1e-20  Score=161.14  Aligned_cols=152  Identities=16%  Similarity=0.109  Sum_probs=101.7

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCc-------------------------------ccceeeEEEEEEEEECCEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSF-------------------------------ITTIGIDFKIRTIELDGKR   51 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~-------------------------------~~t~~~~~~~~~~~~~~~~   51 (205)
                      .+||+++|.+++|||||+++|++.......                               .+.+..+.....+...+  
T Consensus       167 ~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~--  244 (611)
T 3izq_1          167 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR--  244 (611)
T ss_dssp             CCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS--
T ss_pred             ceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC--
Confidence            589999999999999999999876321110                               11222222223333433  


Q ss_pred             EEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChh---HHHHHHHHHHHHHhhcCCCC-cEEEEEeCCCCCCCCCcc
Q 028686           52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SFNNIRNWIRNIEQHASDNV-NKVLVGNKADMDESKRAV  127 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~-piiiv~nK~Dl~~~~~~~  127 (205)
                      ..+.||||||+++|.......++.+|++|+|+|+++..   +|....++...+......++ |++||+||+|+.+.. ..
T Consensus       245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~-~~  323 (611)
T 3izq_1          245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWS-QQ  323 (611)
T ss_dssp             CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTC-HH
T ss_pred             ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchh-HH
Confidence            57899999999999999999999999999999998742   11112223333322222344 599999999996521 11


Q ss_pred             C----HHHHHHHHHHhC-----CcEEEEcCCCCCCHHHH
Q 028686          128 P----TSKGQALADEYG-----IKFFETSAKTNLNVEQV  157 (205)
Q Consensus       128 ~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~  157 (205)
                      .    .+++..+....+     ++++++||++|.|++++
T Consensus       324 ~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          324 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            1    233444444444     68999999999999976

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.81  E-value=7.5e-20  Score=136.20  Aligned_cols=156  Identities=15%  Similarity=0.172  Sum_probs=98.5

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChh----------hhhhhhhhh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----------RFRTITTAY   72 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~~~~   72 (205)
                      ..+|+++|++|||||||+++|++..+...+.++.|.......+.+++   .+.+||+||..          .+......+
T Consensus        26 ~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~  102 (210)
T 1pui_A           26 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGEY  102 (210)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHHH
Confidence            36899999999999999999998764444455555444333333333   47899999973          233333334


Q ss_pred             c---cCCcEEEEEEeCCChhHHHH--HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC-CccCHHHHHHHHHHhC--CcEE
Q 028686           73 Y---RGAMGILLVYDVTDESSFNN--IRNWIRNIEQHASDNVNKVLVGNKADMDESK-RAVPTSKGQALADEYG--IKFF  144 (205)
Q Consensus        73 ~---~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~--~~~~  144 (205)
                      +   ..++++++++|++++.++..  +..|+.    .  .++|+++++||+|+.... .+...+.+..++...+  +.++
T Consensus       103 ~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~----~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~  176 (210)
T 1pui_A          103 LEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV----D--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVE  176 (210)
T ss_dssp             HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH----H--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEE
T ss_pred             HHhhhcccEEEEEEECCCCCchhHHHHHHHHH----H--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceE
Confidence            3   46899999999988655432  222322    1  358999999999985421 1111345555555554  5788


Q ss_pred             EEcCCCCCCHHHHHHHHHHHHHH
Q 028686          145 ETSAKTNLNVEQVFFSIARDIKQ  167 (205)
Q Consensus       145 ~~Sa~~~~gi~~~~~~i~~~~~~  167 (205)
                      ++|++++.|+++++++|.+.+.+
T Consensus       177 ~~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          177 TFSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHC-
T ss_pred             EEeecCCCCHHHHHHHHHHHHhh
Confidence            99999999999999999877543

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.81  E-value=5.5e-20  Score=163.31  Aligned_cols=160  Identities=17%  Similarity=0.094  Sum_probs=107.2

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCC-------CCC-------CcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhh
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGS-------FTT-------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT   67 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~-------~~~-------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~   67 (205)
                      ..++|+++|.+++|||||+++|.+..       +..       ....+.|.++....+.++.....+.+|||||+++|..
T Consensus       295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~  374 (1289)
T 3avx_A          295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVK  374 (1289)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHHH
T ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHHH
Confidence            35899999999999999999998741       000       0112223322222233333446789999999999998


Q ss_pred             hhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCC--ccCHHHHHHHHHHhC----
Q 028686           68 ITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR--AVPTSKGQALADEYG----  140 (205)
Q Consensus        68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~----  140 (205)
                      .....+..+|++|+|+|+++... .+...|+..+..   .++| +++++||+|+.+...  +...+++..++...+    
T Consensus       375 ~mi~gas~AD~aILVVDAtdGv~-~QTrEhL~ll~~---lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~  450 (1289)
T 3avx_A          375 NMITGAAQMDGAILVVAATDGPM-PQTREHILLGRQ---VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGD  450 (1289)
T ss_dssp             HHHHTSCCCSEEEEEEETTTCSC-TTHHHHHHHHHH---HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHhhCCEEEEEEcCCccCc-HHHHHHHHHHHH---cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccccc
Confidence            88889999999999999998532 233344444443   2588 789999999964211  112345666776665    


Q ss_pred             -CcEEEEcCCCC--------CCHHHHHHHHHHHH
Q 028686          141 -IKFFETSAKTN--------LNVEQVFFSIARDI  165 (205)
Q Consensus       141 -~~~~~~Sa~~~--------~gi~~~~~~i~~~~  165 (205)
                       ++++++||++|        .|++++++.|.+.+
T Consensus       451 ~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I  484 (1289)
T 3avx_A          451 DTPIVRGSALKALEGDAEWEAKILELAGFLDSYI  484 (1289)
T ss_dssp             TCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred             ceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence             68999999999        45777777776544

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.80  E-value=5.8e-19  Score=136.17  Aligned_cols=119  Identities=18%  Similarity=0.209  Sum_probs=84.2

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhcc-----
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR-----   74 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-----   74 (205)
                      |..++|+++|.+|+|||||+++|++.... ....+..........+..++  ..+.+|||||+.++......+++     
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence            45699999999999999999999998742 22222222334444556666  47999999999776554444332     


Q ss_pred             ----CCcEEEEEEeCCChhHHHHH-HHHHHHHHhhcCCC--CcEEEEEeCCCCCC
Q 028686           75 ----GAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDN--VNKVLVGNKADMDE  122 (205)
Q Consensus        75 ----~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~--~piiiv~nK~Dl~~  122 (205)
                          .+|++++|++++... +... ..|++.+......+  .|+++|+||+|+.+
T Consensus       112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~  165 (262)
T 3def_A          112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP  165 (262)
T ss_dssp             TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred             HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence                789999999988754 4333 35777777655433  49999999999854

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.80  E-value=4.4e-19  Score=142.34  Aligned_cols=147  Identities=20%  Similarity=0.191  Sum_probs=108.2

Q ss_pred             HHHHHhCCCCCC-------cccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCC-----
Q 028686           20 LLRFSDGSFTTS-------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD-----   87 (205)
Q Consensus        20 i~~l~~~~~~~~-------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~-----   87 (205)
                      +.++....+.++       ..+|.|...  ..+.+++  +.+.+||++|++.++..|..++++++++|||||+++     
T Consensus       166 ~~ri~~~~Y~PT~~Dil~~r~~T~Gi~~--~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l  241 (362)
T 1zcb_A          166 LDKLGVPDYIPSQQDILLARRPTKGIHE--YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVL  241 (362)
T ss_dssp             HHHHTSTTCCCCHHHHHHCCCCCSSEEE--EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEE
T ss_pred             HHHHhcCCCCCChhhhhhccCCccceEE--EEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccc
Confidence            556665555443       456777554  4455554  789999999999999999999999999999999999     


Q ss_pred             -----hhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCC---------------CccCHHHHHHHHH---------
Q 028686           88 -----ESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESK---------------RAVPTSKGQALAD---------  137 (205)
Q Consensus        88 -----~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~---------------~~~~~~~~~~~~~---------  137 (205)
                           ..++.+...|+..+.... ..++|++|++||.||....               ..+..+++..++.         
T Consensus       242 ~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~  321 (362)
T 1zcb_A          242 MEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRD  321 (362)
T ss_dssp             TTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSS
T ss_pred             cccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcc
Confidence                 779999999999887643 3679999999999985311               1256777777652         


Q ss_pred             --HhCCcEEEEcCCCCCCHHHHHHHHHHHHHHHhc
Q 028686          138 --EYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA  170 (205)
Q Consensus       138 --~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~  170 (205)
                        ..++.++++||+++.||+++|+++.+.+.+.+-
T Consensus       322 ~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~l  356 (362)
T 1zcb_A          322 QQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNL  356 (362)
T ss_dssp             CC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCceEEEEEecCCchhHHHHHHHHHHHHHHHHH
Confidence              345789999999999999999999999876553

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.80  E-value=2.7e-20  Score=146.00  Aligned_cols=159  Identities=13%  Similarity=0.094  Sum_probs=101.4

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCC------Cccccee----------------------eE---------------
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTT------SFITTIG----------------------ID---------------   39 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~------~~~~t~~----------------------~~---------------   39 (205)
                      .++|+|+|.+|||||||+|+|++..+.+      ...|+..                      .+               
T Consensus        26 ~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~g  105 (299)
T 2aka_B           26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhcc
Confidence            4689999999999999999999987632      1122200                      00               


Q ss_pred             --------EEEEEEEECCEEEEEEEEeCCChh-------------hhhhhhhhhccCCcEEE-EEEeCCChhHHHHHHHH
Q 028686           40 --------FKIRTIELDGKRIKLQIWDTAGQE-------------RFRTITTAYYRGAMGIL-LVYDVTDESSFNNIRNW   97 (205)
Q Consensus        40 --------~~~~~~~~~~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~~   97 (205)
                              .....+... ....+.+|||||..             .+..+...+++.++.++ +|+|+++..+......|
T Consensus       106 ~~~gi~~~~~~~~~~~~-~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~  184 (299)
T 2aka_B          106 TNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  184 (299)
T ss_dssp             STTCCCSCCEEEEEEET-TCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred             cCCCccccceEEEEeCC-CCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence                    000000000 02568999999963             34566777888888776 79999875443333334


Q ss_pred             HHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHH--hC-CcEEEEcCCCCCCHHHHHHHHHHHHH
Q 028686           98 IRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADE--YG-IKFFETSAKTNLNVEQVFFSIARDIK  166 (205)
Q Consensus        98 ~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~gi~~~~~~i~~~~~  166 (205)
                      +..+.   ..+.|+++|+||+|+.+... ...+.++.....  .+ .+++++||+++.|++++|+++.+...
T Consensus       185 ~~~~~---~~~~~~i~V~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~  252 (299)
T 2aka_B          185 AKEVD---PQGQRTIGVITKLDLMDEGT-DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERK  252 (299)
T ss_dssp             HHHHC---TTCSSEEEEEECGGGSCTTC-CCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHH
T ss_pred             HHHhC---CCCCeEEEEEEccccCCCCc-hHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHH
Confidence            44443   24689999999999965322 222222211001  12 36789999999999999999987443

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.80  E-value=3.3e-21  Score=163.86  Aligned_cols=144  Identities=19%  Similarity=0.121  Sum_probs=80.5

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCC--C-----------------------------CCCcccceeeEEEEEEEEECCEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGS--F-----------------------------TTSFITTIGIDFKIRTIELDGKR   51 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~--~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~   51 (205)
                      .++|+++|.+++|||||+++|++..  +                             ..+..++++.+.....+..+  .
T Consensus       177 ~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~--~  254 (592)
T 3mca_A          177 VVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD--K  254 (592)
T ss_dssp             EEEEEEECCSSSTHHHHHHHHHHHHHCC----------------------------------------------------
T ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC--C
Confidence            4799999999999999999996421  0                             01112223333333333333  4


Q ss_pred             EEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCCh----------hHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCC
Q 028686           52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----------SSFNNIRNWIRNIEQHASDNVN-KVLVGNKADM  120 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~Dl  120 (205)
                      ..+.||||||+++|.......+..+|++|+|+|+++.          ++.+.+    ..+..   .++| +++|+||+|+
T Consensus       255 ~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l----~~~~~---lgip~iIvviNKiDl  327 (592)
T 3mca_A          255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHA----YLLRA---LGISEIVVSVNKLDL  327 (592)
T ss_dssp             ----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHH----HHHHH---SSCCCEEEEEECGGG
T ss_pred             eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHH----HHHHH---cCCCeEEEEEecccc
Confidence            6789999999999988888889999999999999853          333222    22222   3465 8999999999


Q ss_pred             CCCCCcc---CHHHHHHHH-HHhC-----CcEEEEcCCCCCCHH
Q 028686          121 DESKRAV---PTSKGQALA-DEYG-----IKFFETSAKTNLNVE  155 (205)
Q Consensus       121 ~~~~~~~---~~~~~~~~~-~~~~-----~~~~~~Sa~~~~gi~  155 (205)
                      .+.....   ..+++..+. ...+     ++++++||++|.|+.
T Consensus       328 ~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          328 MSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             GTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             ccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            6522111   123334444 3344     379999999999998

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.79  E-value=3.5e-19  Score=142.47  Aligned_cols=121  Identities=14%  Similarity=0.210  Sum_probs=96.2

Q ss_pred             EEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCC----------ChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCC
Q 028686           50 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT----------DESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKA  118 (205)
Q Consensus        50 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~  118 (205)
                      +.+.+.+||++|++.++.+|..++++++++|+|||++          +.++|++...|++.+.... .+++|++||+||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            6789999999999999999999999999999999998          7889999999999887643 3679999999999


Q ss_pred             CCCCCCC-c-------------------cCHHHHHHHHHH----------------hCCcEEEEcCCCCCCHHHHHHHHH
Q 028686          119 DMDESKR-A-------------------VPTSKGQALADE----------------YGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus       119 Dl~~~~~-~-------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||.+... .                   ...+++..++..                ..+.++++||+++.||+++|+++.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            9843211 0                   124566666432                124568999999999999999999


Q ss_pred             HHHHHHhc
Q 028686          163 RDIKQRLA  170 (205)
Q Consensus       163 ~~~~~~~~  170 (205)
                      +.+.+...
T Consensus       341 ~~I~~~~l  348 (354)
T 2xtz_A          341 ETLRRRNL  348 (354)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99876554

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.78  E-value=1.7e-18  Score=140.08  Aligned_cols=133  Identities=17%  Similarity=0.178  Sum_probs=104.9

Q ss_pred             cceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCC----------hhHHHHHHHHHHHHHh
Q 028686           34 TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----------ESSFNNIRNWIRNIEQ  103 (205)
Q Consensus        34 ~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~  103 (205)
                      +|+|.+.  ..+.+++  +.+.+||++|++.++.+|..++++++++|+|||+++          .++|.++..|+..+..
T Consensus       203 ~TiGi~~--~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~  278 (402)
T 1azs_C          203 LTSGIFE--TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWN  278 (402)
T ss_dssp             CCCSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHT
T ss_pred             ceeeeEE--EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHh
Confidence            4566544  4555665  889999999999999999999999999999999999          8999999999999876


Q ss_pred             hc-CCCCcEEEEEeCCCCCCCCC--cc---------------------------CHHHHHHHH-----HH--------hC
Q 028686          104 HA-SDNVNKVLVGNKADMDESKR--AV---------------------------PTSKGQALA-----DE--------YG  140 (205)
Q Consensus       104 ~~-~~~~piiiv~nK~Dl~~~~~--~~---------------------------~~~~~~~~~-----~~--------~~  140 (205)
                      .. ..++|++||+||.||.....  .+                           ..+++..|+     ..        .+
T Consensus       279 ~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~  358 (402)
T 1azs_C          279 NRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHY  358 (402)
T ss_dssp             CTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSC
T ss_pred             cccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcc
Confidence            53 36799999999999843111  01                           135555553     22        24


Q ss_pred             CcEEEEcCCCCCCHHHHHHHHHHHHHHHhc
Q 028686          141 IKFFETSAKTNLNVEQVFFSIARDIKQRLA  170 (205)
Q Consensus       141 ~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~  170 (205)
                      +.++++||+++.||+++|.++.+.+.....
T Consensus       359 ~~~~~TSA~d~~nV~~vF~~v~~~I~~~~l  388 (402)
T 1azs_C          359 CYPHFTCAVDTENIRRVFNDCRDIIQRMHL  388 (402)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEEeecCcCHHHHHHHHHHHHHHHHH
Confidence            677899999999999999999998876644

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.78  E-value=1.2e-18  Score=141.87  Aligned_cols=159  Identities=13%  Similarity=0.125  Sum_probs=110.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCC-Cc-ccceeeEEEEEEEEECCEEEEEEEEeCCChhh----hhhhhhh---hccC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTT-SF-ITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTA---YYRG   75 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~-~~-~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~---~~~~   75 (205)
                      .|+|+|++|||||||+++|.+..... .+ ..|....  ...+.+++ ...+.+||+||...    +..+...   .+..
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~--~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~er  235 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPN--LGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIAR  235 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCE--EEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCcccceecce--eeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHH
Confidence            47899999999999999998875321 11 1122212  22233433 24588999999732    2222222   2457


Q ss_pred             CcEEEEEEeCCChhHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCC
Q 028686           76 AMGILLVYDVTDESSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN  153 (205)
Q Consensus        76 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  153 (205)
                      ++.+++++|++ ..++.++..|...+..+..  ...|.++++||.|+...   ...+++.+.....+++++++||+++.|
T Consensus       236 a~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~---~~~~~l~~~l~~~g~~vi~iSA~~g~g  311 (416)
T 1udx_A          236 TRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE---EAVKALADALAREGLAVLPVSALTGAG  311 (416)
T ss_dssp             SSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH---HHHHHHHHHHHTTTSCEEECCTTTCTT
T ss_pred             HHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH---HHHHHHHHHHHhcCCeEEEEECCCccC
Confidence            99999999998 6677788777777765431  24799999999998542   233445555556678999999999999


Q ss_pred             HHHHHHHHHHHHHHHhc
Q 028686          154 VEQVFFSIARDIKQRLA  170 (205)
Q Consensus       154 i~~~~~~i~~~~~~~~~  170 (205)
                      +++++++|.+.+.+...
T Consensus       312 i~eL~~~i~~~l~~~~~  328 (416)
T 1udx_A          312 LPALKEALHALVRSTPP  328 (416)
T ss_dssp             HHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHHHhccc
Confidence            99999999999876543

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.78  E-value=9e-20  Score=143.37  Aligned_cols=133  Identities=22%  Similarity=0.218  Sum_probs=109.1

Q ss_pred             HHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChh-HHHHHH
Q 028686           18 CLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES-SFNNIR   95 (205)
Q Consensus        18 sli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~   95 (205)
                      +|+.+++.+.+. ..+.||+|..+. ..+..++   .+.+||+  +++++.+++.+++++|++|+|||+++++ ++..+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            578888888888 888999995444 3332232   6899999  8899999999999999999999999997 788899


Q ss_pred             HHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC--CcEEEEcCCCCCCHHHHHHHHH
Q 028686           96 NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG--IKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        96 ~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      .|+..+..   .++|+++|+||+||.+. ..  .+++.+++..++  ++++++||++|.|++++|..+.
T Consensus       106 ~~l~~~~~---~~~piilv~NK~DL~~~-~~--v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~  168 (301)
T 1u0l_A          106 KFLVLAEK---NELETVMVINKMDLYDE-DD--LRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK  168 (301)
T ss_dssp             HHHHHHHH---TTCEEEEEECCGGGCCH-HH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred             HHHHHHHH---CCCCEEEEEeHHHcCCc-hh--HHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence            99988765   46999999999999642 22  245777777777  8999999999999999998864

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.77  E-value=2.6e-18  Score=148.02  Aligned_cols=112  Identities=12%  Similarity=0.071  Sum_probs=79.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCc------------------ccceeeEEEEEEEEECCEEEEEEEEeCCChhhh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSF------------------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF   65 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~------------------~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   65 (205)
                      .+|+++|+.|+|||||+++|++.......                  ...++.......+...  .+.+.+|||||+.++
T Consensus        10 ~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~--~~~~nliDTpG~~~f   87 (665)
T 2dy1_A           10 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--GHRVFLLDAPGYGDF   87 (665)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--TEEEEEEECCCSGGG
T ss_pred             cEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC--CEEEEEEeCCCccch
Confidence            58999999999999999999853321000                  0111211222233333  477999999999999


Q ss_pred             hhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028686           66 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD  121 (205)
Q Consensus        66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~  121 (205)
                      ......+++.+|++++|+|+++..... ...++..+..   .++|+++++||+|+.
T Consensus        88 ~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~---~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           88 VGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER---LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred             HHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH---ccCCEEEEecCCchh
Confidence            988999999999999999988753322 2344444443   369999999999985

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.77  E-value=9.3e-20  Score=143.22  Aligned_cols=163  Identities=21%  Similarity=0.255  Sum_probs=87.7

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhC-CCCCCcc--------cceeeEEEEEEEEECCEEEEEEEEeCCCh-------hhhh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDG-SFTTSFI--------TTIGIDFKIRTIELDGKRIKLQIWDTAGQ-------ERFR   66 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~-~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~~~   66 (205)
                      .++|+|+|++|+|||||+++|.+. .++....        ++.........+..++....+.+||++|.       +.+.
T Consensus        18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~   97 (301)
T 2qnr_A           18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK   97 (301)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CT
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHH
Confidence            478999999999999999998875 3333221        22221111122222344568999999998       4444


Q ss_pred             hhhh-------hhccC-------------CcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC-C
Q 028686           67 TITT-------AYYRG-------------AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK-R  125 (205)
Q Consensus        67 ~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-~  125 (205)
                      .+..       .+++.             +++++|+.+.+. .+++.+.  .+.+.... .+.|+++|+||.|+.... .
T Consensus        98 ~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~--~~~l~~l~-~~~~iilV~~K~Dl~~~~e~  173 (301)
T 2qnr_A           98 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLD--VAFMKAIH-NKVNIVPVIAKADTLTLKER  173 (301)
T ss_dssp             THHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHH--HHHHHHHT-TTSCEEEEECCGGGSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHH--HHHHHHHH-hcCCEEEEEEeCCCCCHHHH
Confidence            4443       34332             233555544332 1233322  13333333 468999999999986421 1


Q ss_pred             ccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHHHHHHHhc
Q 028686          126 AVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA  170 (205)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~  170 (205)
                      ....+++.+++..++++++++||+++ |++++|.++.+.+.+..+
T Consensus       174 ~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p  217 (301)
T 2qnr_A          174 ERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIP  217 (301)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCC
Confidence            22346778888889999999999999 999999999998875443

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.76  E-value=9.1e-19  Score=140.95  Aligned_cols=109  Identities=11%  Similarity=0.108  Sum_probs=78.1

Q ss_pred             EEEEEeCCChhhh-------------hhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 028686           53 KLQIWDTAGQERF-------------RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD  119 (205)
Q Consensus        53 ~~~i~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D  119 (205)
                      .+.+|||||..++             ..+...++.++|++|+|+|..+.+...  ..|+..+......+.|+++|+||+|
T Consensus       137 ~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~~~~~~i~V~nK~D  214 (360)
T 3t34_A          137 NLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPSGDRTFGVLTKID  214 (360)
T ss_dssp             SEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred             CeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcccCCCEEEEEeCCc
Confidence            5899999997765             566788899999999999876543221  3345555555546789999999999


Q ss_pred             CCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHHH
Q 028686          120 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARD  164 (205)
Q Consensus       120 l~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~  164 (205)
                      +.+. .....+.+..+....+.+|+++++.++.++++.+..+...
T Consensus       215 l~~~-~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~~  258 (360)
T 3t34_A          215 LMDK-GTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAAR  258 (360)
T ss_dssp             GCCT-TCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHHH
T ss_pred             cCCC-cccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHHH
Confidence            9753 3334444444455667899999999998888776654443

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.76  E-value=3.1e-18  Score=148.08  Aligned_cols=161  Identities=14%  Similarity=0.168  Sum_probs=106.9

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCC-CCccccee-eEEE---------------------------------------
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIG-IDFK---------------------------------------   41 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~-~~~~---------------------------------------   41 (205)
                      .++|+|+|.+|+|||||+|+|++..+. ....|++. ....                                       
T Consensus        69 ~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~~  148 (695)
T 2j69_A           69 VFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKK  148 (695)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHHH
Confidence            589999999999999999999988743 22233331 0000                                       


Q ss_pred             -------------EEEEEECCEE--EEEEEEeCCChhh---hhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHh
Q 028686           42 -------------IRTIELDGKR--IKLQIWDTAGQER---FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ  103 (205)
Q Consensus        42 -------------~~~~~~~~~~--~~~~i~D~~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~  103 (205)
                                   ...+.++...  ..+.+|||||...   .......+++.+|++++|+|++++.+..+...|.+.+..
T Consensus       149 l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~  228 (695)
T 2j69_A          149 LEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG  228 (695)
T ss_dssp             HHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT
T ss_pred             HhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh
Confidence                         0001111000  2489999999765   335566788999999999999988777776656555432


Q ss_pred             hcCCCCcEEEEEeCCCCCCCCCccCHH----------HHHH-----HHHH--------hCCcEEEEcCC-----------
Q 028686          104 HASDNVNKVLVGNKADMDESKRAVPTS----------KGQA-----LADE--------YGIKFFETSAK-----------  149 (205)
Q Consensus       104 ~~~~~~piiiv~nK~Dl~~~~~~~~~~----------~~~~-----~~~~--------~~~~~~~~Sa~-----------  149 (205)
                         .+.|+++|+||+|+.... .+..+          .+..     +...        ...+++++||+           
T Consensus       229 ---~~~~iiiVlNK~Dl~~~~-~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~  304 (695)
T 2j69_A          229 ---RGLTVFFLVNAWDQVRES-LIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ  304 (695)
T ss_dssp             ---SCCCEEEEEECGGGGGGG-CSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred             ---hCCCEEEEEECccccccc-ccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence               357899999999986422 11111          1111     1111        12478999999           


Q ss_pred             ---CCCCHHHHHHHHHHHHHH
Q 028686          150 ---TNLNVEQVFFSIARDIKQ  167 (205)
Q Consensus       150 ---~~~gi~~~~~~i~~~~~~  167 (205)
                         ++.|+++++.++.+.+..
T Consensus       305 ~~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          305 ADLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             CCCTTSSHHHHHHHHHHHHHH
T ss_pred             hhhhccCHHHHHHHHHHHHHH
Confidence               999999999999887754

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.75  E-value=1.1e-17  Score=140.34  Aligned_cols=114  Identities=17%  Similarity=0.121  Sum_probs=77.0

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCC--CCCC------------------cccceeeEEE--EEEEEECCEEEEEEEEeCC
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGS--FTTS------------------FITTIGIDFK--IRTIELDGKRIKLQIWDTA   60 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~--~~~~------------------~~~t~~~~~~--~~~~~~~~~~~~~~i~D~~   60 (205)
                      ..+|+++|.+++|||||+++|+...  +...                  ..++.+.+..  ...+..++  +.+.+||||
T Consensus        13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liDTP   90 (529)
T 2h5e_A           13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLDTP   90 (529)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEECCC
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEECC
Confidence            5799999999999999999998742  1000                  0001111111  12233333  679999999


Q ss_pred             ChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686           61 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  122 (205)
Q Consensus        61 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~  122 (205)
                      |+.+|......++..+|++|+|+|+++.... ....++..+.   ..++|+++++||+|+..
T Consensus        91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~-~t~~~~~~~~---~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVED-RTRKLMEVTR---LRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCH-HHHHHHHHHT---TTTCCEEEEEECTTSCC
T ss_pred             CChhHHHHHHHHHHHCCEEEEEEeCCccchH-HHHHHHHHHH---HcCCCEEEEEcCcCCcc
Confidence            9999988888899999999999999885321 1222223222   24799999999999864

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.75  E-value=1.7e-17  Score=143.37  Aligned_cols=112  Identities=19%  Similarity=0.144  Sum_probs=81.4

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCC--C------CC------------CcccceeeEEEEEEEEECCEEEEEEEEeCCCh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGS--F------TT------------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   62 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~--~------~~------------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~   62 (205)
                      ..+|+|+|.+|+|||||+++|+...  +      ..            ....|..  .....+.+.+  +.+.+|||||+
T Consensus        12 ~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~--~~~~~~~~~~--~~i~liDTPG~   87 (691)
T 1dar_A           12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITIT--AAVTTCFWKD--HRINIIDTPGH   87 (691)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHCC------------------------------CCEEEEEETT--EEEEEECCCSS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccc--cceEEEEECC--eEEEEEECcCc
Confidence            5799999999999999999998421  1      00            1111211  2222334444  67999999999


Q ss_pred             hhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686           63 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  122 (205)
Q Consensus        63 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~  122 (205)
                      .+|...+..+++.+|++|+|+|+++..++.....|.. +..   .++|+++++||+|+..
T Consensus        88 ~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           88 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred             cchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence            9999889999999999999999998777666555543 332   3699999999999865

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.74  E-value=5e-17  Score=140.67  Aligned_cols=116  Identities=18%  Similarity=0.101  Sum_probs=80.9

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCC--CCCC-----------c-----ccceeeEEEEEEEEEC-----CEEEEEEEEeC
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGS--FTTS-----------F-----ITTIGIDFKIRTIELD-----GKRIKLQIWDT   59 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~--~~~~-----------~-----~~t~~~~~~~~~~~~~-----~~~~~~~i~D~   59 (205)
                      ..+|+|+|..++|||||+++|+...  +...           +     ...+........+.++     +..+.+.+|||
T Consensus        10 ~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDT   89 (704)
T 2rdo_7           10 YRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDT   89 (704)
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeC
Confidence            5789999999999999999997531  1110           0     0111111122223332     23478999999


Q ss_pred             CChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686           60 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  122 (205)
Q Consensus        60 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~  122 (205)
                      ||+.+|......+++.+|++|+|+|+++.........| ..+..   .++|+++++||+|+..
T Consensus        90 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           90 PGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK---YKVPRIAFVNKMDRMG  148 (704)
T ss_pred             CCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH---cCCCEEEEEeCCCccc
Confidence            99999998899999999999999999987554443333 22322   4699999999999864

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.74  E-value=1.8e-17  Score=128.34  Aligned_cols=118  Identities=18%  Similarity=0.172  Sum_probs=79.1

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCC-CcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhh-------hh-
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITT-------AY-   72 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-------~~-   72 (205)
                      ..++|+++|.+|+|||||+|+|++..+.. ...+..........+..++  ..+.+|||||..++.....       .+ 
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~~  115 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSFL  115 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence            35899999999999999999999887521 1112111122223334444  6799999999865542221       11 


Q ss_pred             -ccCCcEEEEEEeCCChhHHHHH-HHHHHHHHhhcCCC--CcEEEEEeCCCCCC
Q 028686           73 -YRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDN--VNKVLVGNKADMDE  122 (205)
Q Consensus        73 -~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~--~piiiv~nK~Dl~~  122 (205)
                       ...+|++++|+|++.. ++... ..|+..+......+  .|+++|+||+|+.+
T Consensus       116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~  168 (270)
T 1h65_A          116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP  168 (270)
T ss_dssp             TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred             hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence             3479999999998763 34333 35777776654433  69999999999864

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.73  E-value=4.6e-18  Score=138.62  Aligned_cols=157  Identities=15%  Similarity=0.172  Sum_probs=82.0

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCC-CCc-------ccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh-------h
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFT-TSF-------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------T   67 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~-------~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~   67 (205)
                      .++|+|+|++|||||||++.|++..+. ...       .++.+.......+...+....+.+||++|...+.       .
T Consensus        31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~  110 (418)
T 2qag_C           31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP  110 (418)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred             CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence            478999999999999999999987652 211       2233322222222223444578999999976431       1


Q ss_pred             ------------------hhhhhccCCcEEEEEEeCCCh-hHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCCCcc
Q 028686           68 ------------------ITTAYYRGAMGILLVYDVTDE-SSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAV  127 (205)
Q Consensus        68 ------------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~  127 (205)
                                        +...++.++++.+++|..... .++..+. .|+..+.    .++|+|+|+||+|+.. ...+
T Consensus       111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~-~~ev  185 (418)
T 2qag_C          111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLT-PEEC  185 (418)
T ss_dssp             HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSC-HHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCcc-HHHH
Confidence                              123345556655555555432 3444443 4666553    3699999999999854 2223


Q ss_pred             CH--HHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHHH
Q 028686          128 PT--SKGQALADEYGIKFFETSAKTNLNVEQVFFSIARD  164 (205)
Q Consensus       128 ~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~  164 (205)
                      ..  +.+..++...+++++++|+.++.+++++|..+...
T Consensus       186 ~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~  224 (418)
T 2qag_C          186 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR  224 (418)
T ss_dssp             HHHHHHHHHHHHHHTCCCCCCC-----------------
T ss_pred             HHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence            32  56677778889999999999999999887776643

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.73  E-value=2.6e-17  Score=142.28  Aligned_cols=114  Identities=19%  Similarity=0.139  Sum_probs=81.2

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHh--CCCCCC---c-------------ccceeeEEEEEEEEECCEEEEEEEEeCCChhh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSD--GSFTTS---F-------------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQER   64 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~--~~~~~~---~-------------~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   64 (205)
                      ..+|+|+|.+|+|||||+++|+.  +.+...   .             .+.+........+.+++  +.+.+|||||+.+
T Consensus        10 ~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~d   87 (693)
T 2xex_A           10 TRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPGHVD   87 (693)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCCCSS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcCCcc
Confidence            47899999999999999999985  222100   0             01111111122334444  6799999999999


Q ss_pred             hhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686           65 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  122 (205)
Q Consensus        65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~  122 (205)
                      +......+++.+|++++|+|+++..++.....|.. +..   .++|+++|+||+|+..
T Consensus        88 f~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           88 FTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLG  141 (693)
T ss_dssp             CCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred             hHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence            98888999999999999999998766665554543 333   3689999999999865

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.73  E-value=3.9e-18  Score=138.53  Aligned_cols=85  Identities=20%  Similarity=0.145  Sum_probs=47.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCccc--ceeeEEEEEEE-------------------EECC-EEEEEEEEeCCC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFIT--TIGIDFKIRTI-------------------ELDG-KRIKLQIWDTAG   61 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~--t~~~~~~~~~~-------------------~~~~-~~~~~~i~D~~g   61 (205)
                      ++|+++|.||||||||+|+|.+........|  |.........+                   .+++ ..+.+.+|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            5899999999999999999998873222222  11111221111                   1222 257899999999


Q ss_pred             hhh----hhhhhh---hhccCCcEEEEEEeCCCh
Q 028686           62 QER----FRTITT---AYYRGAMGILLVYDVTDE   88 (205)
Q Consensus        62 ~~~----~~~~~~---~~~~~~d~~i~v~d~~~~   88 (205)
                      ...    ...+..   ..++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            753    233333   346899999999999875

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.72  E-value=1.8e-17  Score=130.79  Aligned_cols=112  Identities=12%  Similarity=0.161  Sum_probs=70.0

Q ss_pred             EEEEEEeCCChhh-------------hhhhhhhhccCCcEEEEEEeCCChhHH-HHHHHHHHHHHhhcCCCCcEEEEEeC
Q 028686           52 IKLQIWDTAGQER-------------FRTITTAYYRGAMGILLVYDVTDESSF-NNIRNWIRNIEQHASDNVNKVLVGNK  117 (205)
Q Consensus        52 ~~~~i~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~piiiv~nK  117 (205)
                      ..+.+|||||..+             +......++..+|++++|+|.++.... .....+...+.   ..+.|+++|+||
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~---~~~~~~i~v~NK  207 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD---PEGKRTIGVITK  207 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC---SSCSSEEEEEEC
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhC---CCCCcEEEEEcC
Confidence            4689999999643             456677788999999999997442211 11112223332   246899999999


Q ss_pred             CCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCC------CCCHHHHHHHHHHHHHH
Q 028686          118 ADMDESKRAVPTSKGQALADEYGIKFFETSAKT------NLNVEQVFFSIARDIKQ  167 (205)
Q Consensus       118 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------~~gi~~~~~~i~~~~~~  167 (205)
                      +|+.+... ...+.+......++..++++++.+      +.|++++++.+.+.+..
T Consensus       208 ~Dl~~~~~-~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~  262 (315)
T 1jwy_B          208 LDLMDKGT-DAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN  262 (315)
T ss_dssp             TTSSCSSC-CCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred             cccCCcch-HHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence            99965332 122222211112225677776654      67889999988777754

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.68  E-value=6.9e-19  Score=132.54  Aligned_cols=153  Identities=18%  Similarity=0.177  Sum_probs=90.1

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEE------------EEEEEEC-CEEE-----------------
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFK------------IRTIELD-GKRI-----------------   52 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~------------~~~~~~~-~~~~-----------------   52 (205)
                      ..+|+|+|.+|||||||+++|+...+...+.++++.++.            ...+.++ +..+                 
T Consensus        38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~  117 (226)
T 2hf9_A           38 VVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNLD  117 (226)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCGG
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhcC
Confidence            478999999999999999999987655545555554432            1222221 1111                 


Q ss_pred             --EEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHH
Q 028686           53 --KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS  130 (205)
Q Consensus        53 --~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~  130 (205)
                        .+.++|++|.-...   ..+-...+..+.+.|.........  .+...      .+.|.++|+||+|+.+ ......+
T Consensus       118 ~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~------~~~~~iiv~NK~Dl~~-~~~~~~~  185 (226)
T 2hf9_A          118 EIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGI------MKTADLIVINKIDLAD-AVGADIK  185 (226)
T ss_dssp             GCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHH------HTTCSEEEEECGGGHH-HHTCCHH
T ss_pred             CCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhH------hhcCCEEEEeccccCc-hhHHHHH
Confidence              23344444421000   001112333445555422111000  00011      1367899999999854 2224566


Q ss_pred             HHHHHHHHh--CCcEEEEcCCCCCCHHHHHHHHHHHHHH
Q 028686          131 KGQALADEY--GIKFFETSAKTNLNVEQVFFSIARDIKQ  167 (205)
Q Consensus       131 ~~~~~~~~~--~~~~~~~Sa~~~~gi~~~~~~i~~~~~~  167 (205)
                      ++..++..+  +++++++||++|.|++++|+++.+.+..
T Consensus       186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            677776655  5789999999999999999999988764

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.67  E-value=6e-17  Score=121.47  Aligned_cols=155  Identities=17%  Similarity=0.078  Sum_probs=94.0

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEE--------------EEEEEEEC----------------CEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDF--------------KIRTIELD----------------GKRI   52 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~--------------~~~~~~~~----------------~~~~   52 (205)
                      ..+|+++|.+|||||||+++|+..............++              ....+...                ....
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC  109 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence            36899999999999999999987532111111111000              00111110                0124


Q ss_pred             EEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHH
Q 028686           53 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG  132 (205)
Q Consensus        53 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~  132 (205)
                      .+.+|||+|+....   ..+....+.+++|+|+.+...  ....+...      .+.|+++|+||+|+.+. .....+++
T Consensus       110 d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~--~~~~~~~~------~~~~~iiv~NK~Dl~~~-~~~~~~~~  177 (221)
T 2wsm_A          110 DLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDD--VVEKHPEI------FRVADLIVINKVALAEA-VGADVEKM  177 (221)
T ss_dssp             SEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTT--HHHHCHHH------HHTCSEEEEECGGGHHH-HTCCHHHH
T ss_pred             CEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcch--hhhhhhhh------hhcCCEEEEecccCCcc-hhhHHHHH
Confidence            57899998852111   011125678999999876532  11111111      13789999999998542 12345666


Q ss_pred             HHHHHHh--CCcEEEEcCCCCCCHHHHHHHHHHHHHHHh
Q 028686          133 QALADEY--GIKFFETSAKTNLNVEQVFFSIARDIKQRL  169 (205)
Q Consensus       133 ~~~~~~~--~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  169 (205)
                      ..++...  +++++++||++|.|++++|+++.+.+..+.
T Consensus       178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~  216 (221)
T 2wsm_A          178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS  216 (221)
T ss_dssp             HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred             HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence            6666554  378999999999999999999998876543

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.66  E-value=4.3e-18  Score=136.66  Aligned_cols=157  Identities=14%  Similarity=0.115  Sum_probs=92.6

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCC------cccceeeE-------------------------------------
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTS------FITTIGID-------------------------------------   39 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~------~~~t~~~~-------------------------------------   39 (205)
                      ..+|+|+|.+|||||||+|+|++.++.+.      ..|+....                                     
T Consensus        31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g  110 (353)
T 2x2e_A           31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  110 (353)
T ss_dssp             CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence            46899999999999999999999876321      11220000                                     


Q ss_pred             ------EEEEEEEECC-EEEEEEEEeCCChh-------------hhhhhhhhhccCCcEEEE-EEeCCChhHHHHHHHHH
Q 028686           40 ------FKIRTIELDG-KRIKLQIWDTAGQE-------------RFRTITTAYYRGAMGILL-VYDVTDESSFNNIRNWI   98 (205)
Q Consensus        40 ------~~~~~~~~~~-~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~~~~   98 (205)
                            .....+.+.+ ....+.+|||||..             .+..+...++..++.+|+ |.|.+..  +... .|.
T Consensus       111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~--~~~~-~~~  187 (353)
T 2x2e_A          111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD--LANS-DAL  187 (353)
T ss_dssp             TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSC--GGGC-HHH
T ss_pred             cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCc--cchh-HHH
Confidence                  0000011100 12468999999953             345566677766665554 5565542  2111 122


Q ss_pred             HHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHH--HHHHhC-CcEEEEcCCCCCCHHHHHHHHHH
Q 028686           99 RNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQA--LADEYG-IKFFETSAKTNLNVEQVFFSIAR  163 (205)
Q Consensus        99 ~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~--~~~~~~-~~~~~~Sa~~~~gi~~~~~~i~~  163 (205)
                      ..+......+.|+++|+||+|+.+.... ..+.+..  +....+ .+++++||+++.|++++++++.+
T Consensus       188 ~i~~~~~~~~~~~i~V~NK~Dl~~~~~~-~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          188 KVAKEVDPQGQRTIGVITKLDLMDEGTD-ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHHHCTTCTTEEEEEECGGGSCTTCC-CHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHHHhCcCCCceEEEeccccccCcchh-HHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            2333333457899999999999653221 1111111  001123 35678999999999999999876

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.66  E-value=1.6e-15  Score=121.21  Aligned_cols=145  Identities=14%  Similarity=0.075  Sum_probs=91.7

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCccc--ceeeEEEEEEEEECCE---------------EEEEEEEeCCChhhh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFIT--TIGIDFKIRTIELDGK---------------RIKLQIWDTAGQERF   65 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~   65 (205)
                      .++|+++|.||||||||+|+|.+........|  |...+..  .+.+++.               ...+.+||+||..++
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g--~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~   79 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG--VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG   79 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS--EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE--EEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence            47899999999999999999999774322222  2222221  2333332               146999999998754


Q ss_pred             h----hhhh---hhccCCcEEEEEEeCCCh----------hHHHHHHHHHHHH---------------------------
Q 028686           66 R----TITT---AYYRGAMGILLVYDVTDE----------SSFNNIRNWIRNI---------------------------  101 (205)
Q Consensus        66 ~----~~~~---~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i---------------------------  101 (205)
                      .    .+..   ..++.+|++++|+|+++.          ++++++..+..++                           
T Consensus        80 a~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~  159 (363)
T 1jal_A           80 ASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAK  159 (363)
T ss_dssp             HHHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred             ccccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHH
Confidence            3    2322   347899999999999862          3344433222211                           


Q ss_pred             -------------H-------------------hhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcC
Q 028686          102 -------------E-------------------QHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSA  148 (205)
Q Consensus       102 -------------~-------------------~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  148 (205)
                                   .                   .+. ....|+++++|+.|... ......+.+.+++...+.+++.+||
T Consensus       160 ~~~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~-~~n~~~~~v~~~~~~~~~~~i~~sA  238 (363)
T 1jal_A          160 FELSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGF-ENNPYLDRVREIAAKEGAVVVPVCA  238 (363)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCS-SSCHHHHHHHHHHHHTTCEEEEECH
T ss_pred             HHHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccc-cccHHHHHHHHHHHHcCCCEEEech
Confidence                         0                   010 12489999999998632 1223456677888888899999997


Q ss_pred             CC
Q 028686          149 KT  150 (205)
Q Consensus       149 ~~  150 (205)
                      +.
T Consensus       239 ~~  240 (363)
T 1jal_A          239 AI  240 (363)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.65  E-value=4e-16  Score=137.43  Aligned_cols=125  Identities=20%  Similarity=0.158  Sum_probs=88.6

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCC--CCC--------------Ccc--cceeeEEEEEEEE------------ECCEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGS--FTT--------------SFI--TTIGIDFKIRTIE------------LDGKRI   52 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~--~~~--------------~~~--~t~~~~~~~~~~~------------~~~~~~   52 (205)
                      ..+|+|+|.+++|||||+++|+...  ...              +..  .|+........+.            .++..+
T Consensus        19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~   98 (842)
T 1n0u_A           19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF   98 (842)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCc
Confidence            4799999999999999999998742  100              011  1222222222222            234478


Q ss_pred             EEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHH
Q 028686           53 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK  131 (205)
Q Consensus        53 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~  131 (205)
                      .+.+|||||+.+|...+..+++.+|++|+|+|+++..++.....|.....    .++|+++++||+|+...+.....++
T Consensus        99 ~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~~~e~~~~~~e  173 (842)
T 1n0u_A           99 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRALLELQVSKED  173 (842)
T ss_dssp             EEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHHHHTSCCCHHH
T ss_pred             eEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcchhhhccCHHH
Confidence            89999999999999999999999999999999999877776655554332    4689999999999864333333333

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.61  E-value=3.6e-16  Score=125.52  Aligned_cols=105  Identities=14%  Similarity=0.131  Sum_probs=69.3

Q ss_pred             EEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC-ccCHH
Q 028686           52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-AVPTS  130 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~-~~~~~  130 (205)
                      +.+.+|||||....   ....+..+|++++|+|....+.+..+.       .. ..+.|+++|+||+|+.+... ....+
T Consensus       172 ~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~-------~~-~~~~p~ivVlNK~Dl~~~~~~~~~~~  240 (355)
T 3p32_A          172 FDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIK-------KG-VLELADIVVVNKADGEHHKEARLAAR  240 (355)
T ss_dssp             CCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCC-------TT-SGGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred             CCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHH-------Hh-HhhcCCEEEEECCCCcChhHHHHHHH
Confidence            56899999995432   233457899999999987655432221       10 12368999999999853110 00111


Q ss_pred             HHHHHHHHh-------CCcEEEEcCCCCCCHHHHHHHHHHHHHH
Q 028686          131 KGQALADEY-------GIKFFETSAKTNLNVEQVFFSIARDIKQ  167 (205)
Q Consensus       131 ~~~~~~~~~-------~~~~~~~Sa~~~~gi~~~~~~i~~~~~~  167 (205)
                      +........       +.+++++||++|.|+++++++|.+.+..
T Consensus       241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            222221112       4789999999999999999999988765

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.61  E-value=3.9e-15  Score=125.48  Aligned_cols=115  Identities=13%  Similarity=0.037  Sum_probs=78.4

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCC----------------------CCCcccceeeEEEEEEEEECCEEEEEEEEeCC
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSF----------------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTA   60 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~----------------------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   60 (205)
                      .-+|+|+|..++|||||..+|+...-                      ..+....+.+......+.+++  +.+.|+|||
T Consensus        31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDTP  108 (548)
T 3vqt_A           31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDTP  108 (548)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECCC
T ss_pred             cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeCC
Confidence            45899999999999999999963210                      001111111111223344555  678999999


Q ss_pred             ChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028686           61 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES  123 (205)
Q Consensus        61 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~  123 (205)
                      |+.+|.....+.++-+|++|+|+|+...-.-.....| ..+..   .++|+++++||+|....
T Consensus       109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~---~~lp~i~fINK~Dr~~a  167 (548)
T 3vqt_A          109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM---RATPVMTFVNKMDREAL  167 (548)
T ss_dssp             CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH---TTCCEEEEEECTTSCCC
T ss_pred             CcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH---hCCceEEEEecccchhc
Confidence            9999999999999999999999999874322222223 33333   46999999999997553

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.59  E-value=4.1e-15  Score=119.43  Aligned_cols=150  Identities=16%  Similarity=0.121  Sum_probs=94.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCC-C-----cccceeeEEEEEEEEECC-------------------EEEEEEEEe
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTT-S-----FITTIGIDFKIRTIELDG-------------------KRIKLQIWD   58 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~-~-----~~~t~~~~~~~~~~~~~~-------------------~~~~~~i~D   58 (205)
                      ++|+++|.||+|||||+|+|.+..... .     ..|+.+..      .+.+                   ....+.+||
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~------~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvD   75 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV------PLEDERLYALQRTFAKGERVPPVVPTHVEFVD   75 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE------ECCCHHHHHHHHHHCBTTBCCCEECCEEEEEE
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE------ecChHHHHHHHHHhcccccccccCCceEEEEE
Confidence            578999999999999999998864221 1     23333321      2211                   235699999


Q ss_pred             CCChhhhh----hh---hhhhccCCcEEEEEEeCCCh----------hHHHHHHHHHHHH--------------------
Q 028686           59 TAGQERFR----TI---TTAYYRGAMGILLVYDVTDE----------SSFNNIRNWIRNI--------------------  101 (205)
Q Consensus        59 ~~g~~~~~----~~---~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i--------------------  101 (205)
                      +||.....    .+   ....++.+|++++|+|+++.          +.++++..+..++                    
T Consensus        76 tpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~  155 (368)
T 2dby_A           76 IAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEAR  155 (368)
T ss_dssp             CCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccccccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhc
Confidence            99986532    22   22347899999999999751          2222221111111                    


Q ss_pred             ---------------H----h-------------------hc-CCCCcEEEEEeCCCCC--CCCCccCHHHHHHHHHHhC
Q 028686          102 ---------------E----Q-------------------HA-SDNVNKVLVGNKADMD--ESKRAVPTSKGQALADEYG  140 (205)
Q Consensus       102 ---------------~----~-------------------~~-~~~~piiiv~nK~Dl~--~~~~~~~~~~~~~~~~~~~  140 (205)
                                     .    .                   +. ....|+++++||.|..  +.......+.+++++...+
T Consensus       156 ~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g  235 (368)
T 2dby_A          156 ADRERLPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEG  235 (368)
T ss_dssp             HCGGGHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHT
T ss_pred             cchhHHHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcC
Confidence                           0    0                   00 0137999999999842  2111345677788888889


Q ss_pred             CcEEEEcCCCCCCHHHHHH
Q 028686          141 IKFFETSAKTNLNVEQVFF  159 (205)
Q Consensus       141 ~~~~~~Sa~~~~gi~~~~~  159 (205)
                      .+++++||+...++.+++.
T Consensus       236 ~~vv~iSAk~E~el~eL~~  254 (368)
T 2dby_A          236 AEVVVVSARLEAELAELSG  254 (368)
T ss_dssp             CEEEEECHHHHHHHHTSCH
T ss_pred             CeEEEeechhHHHHHHhch
Confidence            9999999988766665544

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.56  E-value=5.2e-15  Score=124.86  Aligned_cols=117  Identities=16%  Similarity=0.126  Sum_probs=79.2

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCC---CCcccceeeEEEEEE----------------------EEE------CCEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFT---TSFITTIGIDFKIRT----------------------IEL------DGKR   51 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~---~~~~~t~~~~~~~~~----------------------~~~------~~~~   51 (205)
                      ..+|+|+|.+|+|||||+|+|++..+.   ....+++........                      +..      ++..
T Consensus        65 ~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~  144 (550)
T 2qpt_A           65 KPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFM  144 (550)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccce
Confidence            478999999999999999999998763   222332211100000                      000      0000


Q ss_pred             ---------EEEEEEeCCChhh-----------hhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcE
Q 028686           52 ---------IKLQIWDTAGQER-----------FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK  111 (205)
Q Consensus        52 ---------~~~~i~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi  111 (205)
                               ..+.+|||||...           +......++..+|++++|+|+++.........|+..+..   .+.|+
T Consensus       145 ~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~pv  221 (550)
T 2qpt_A          145 CAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---HEDKI  221 (550)
T ss_dssp             EEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---CGGGE
T ss_pred             EEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---cCCCE
Confidence                     2588999999764           445667788899999999999875444555556665543   35899


Q ss_pred             EEEEeCCCCCC
Q 028686          112 VLVGNKADMDE  122 (205)
Q Consensus       112 iiv~nK~Dl~~  122 (205)
                      ++|+||+|+.+
T Consensus       222 ilVlNK~Dl~~  232 (550)
T 2qpt_A          222 RVVLNKADMVE  232 (550)
T ss_dssp             EEEEECGGGSC
T ss_pred             EEEEECCCccC
Confidence            99999999864

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.54  E-value=7.6e-14  Score=107.12  Aligned_cols=110  Identities=15%  Similarity=0.055  Sum_probs=68.3

Q ss_pred             EEEEEEeCCChhhhhhhhh------hhccCCcEEEEEEeCCC---hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686           52 IKLQIWDTAGQERFRTITT------AYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  122 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~  122 (205)
                      +.+.+|||||.........      ..+.. +++++++|...   +..+.....+.....  ...+.|+++|+||+|+..
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~iv~NK~D~~~  185 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID--LRLGATTIPALNKVDLLS  185 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH--HHHTSCEEEEECCGGGCC
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh--cccCCCeEEEEecccccc
Confidence            4689999999876543221      23455 88888888754   223322221111111  113589999999999854


Q ss_pred             CCCccCHHHHHHH----------------------------HHHhC--CcEEEEcCCCCCCHHHHHHHHHHHHHH
Q 028686          123 SKRAVPTSKGQAL----------------------------ADEYG--IKFFETSAKTNLNVEQVFFSIARDIKQ  167 (205)
Q Consensus       123 ~~~~~~~~~~~~~----------------------------~~~~~--~~~~~~Sa~~~~gi~~~~~~i~~~~~~  167 (205)
                      .. .  .+++.++                            +..++  .+++++||+++.|++++++++.+.+..
T Consensus       186 ~~-~--~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~  257 (262)
T 1yrb_A          186 EE-E--KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT  257 (262)
T ss_dssp             HH-H--HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cc-c--HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence            21 1  1111111                            23333  489999999999999999999887654

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.53  E-value=6.5e-14  Score=112.07  Aligned_cols=103  Identities=12%  Similarity=0.094  Sum_probs=62.5

Q ss_pred             EEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHH
Q 028686           52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK  131 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~  131 (205)
                      +.+.++||+|....   ...+...+|.+++|+|+..++....+..   .+     .+.|.++|+||+|+.+.. . ....
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~-~-~~~~  233 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIV-P-ARRI  233 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHH-H-HHHH
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCch-h-HHHH
Confidence            46799999996422   2334678999999999987543222211   11     236889999999985310 0 0111


Q ss_pred             HHHHHH----------HhCCcEEEEcCCCCCCHHHHHHHHHHHHHH
Q 028686          132 GQALAD----------EYGIKFFETSAKTNLNVEQVFFSIARDIKQ  167 (205)
Q Consensus       132 ~~~~~~----------~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~  167 (205)
                      ...+..          ....+++.+||+++.|+++++++|.+.+..
T Consensus       234 ~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~  279 (349)
T 2www_A          234 QAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL  279 (349)
T ss_dssp             HHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            222211          113578999999999999999999887643

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.50  E-value=7.1e-13  Score=106.50  Aligned_cols=152  Identities=16%  Similarity=0.129  Sum_probs=96.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhh----hhh---hhhhccCC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF----RTI---TTAYYRGA   76 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~---~~~~~~~~   76 (205)
                      .+|+++|.||||||||+|+|.+........|.++.+.....+.+++  ..+.++|+||...-    ..+   ....++.+
T Consensus        73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~a  150 (376)
T 4a9a_A           73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVARTC  150 (376)
T ss_dssp             EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHHC
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHhc
Confidence            4799999999999999999999876555555555566666777777  56889999996421    111   22346789


Q ss_pred             cEEEEEEeCCChhHHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCC-------CCCccCHHHHHHHHHHhCCcEEEEc
Q 028686           77 MGILLVYDVTDESSFNNIRNWIRNIEQHA--SDNVNKVLVGNKADMDE-------SKRAVPTSKGQALADEYGIKFFETS  147 (205)
Q Consensus        77 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piiiv~nK~Dl~~-------~~~~~~~~~~~~~~~~~~~~~~~~S  147 (205)
                      |++++|+|++++..  +......++....  -.+.|.++++||.|...       .......+++..+...+.+..-.+-
T Consensus       151 d~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv~  228 (376)
T 4a9a_A          151 NLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEIA  228 (376)
T ss_dssp             SEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEEE
T ss_pred             CccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCee
Confidence            99999999998642  2222223332221  13578889999999632       1123456666666666654323333


Q ss_pred             CCCCCCHHHHHH
Q 028686          148 AKTNLNVEQVFF  159 (205)
Q Consensus       148 a~~~~gi~~~~~  159 (205)
                      ...+...+++.+
T Consensus       229 ~~~nv~eddl~d  240 (376)
T 4a9a_A          229 FRCDATVDDLID  240 (376)
T ss_dssp             ECSCCCHHHHHH
T ss_pred             ecccCCHHHHHH
Confidence            333444555443

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.49  E-value=1.7e-14  Score=115.22  Aligned_cols=104  Identities=15%  Similarity=0.143  Sum_probs=65.3

Q ss_pred             EEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccC--H
Q 028686           52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP--T  129 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~--~  129 (205)
                      +.+.+|||||..+...   .....+|++++|+|.+..+.+..+..   ..     .+.|.++|+||+|+.+. ....  .
T Consensus       149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~-~~~~~~~  216 (341)
T 2p67_A          149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNH-TNVAIAR  216 (341)
T ss_dssp             CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCH-HHHHHHH
T ss_pred             CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCCh-HHHHHHH
Confidence            5689999999764432   24578999999999976543221111   11     13688999999998542 1111  1


Q ss_pred             HHHHHHHHHh-------CCcEEEEcCCCCCCHHHHHHHHHHHHHH
Q 028686          130 SKGQALADEY-------GIKFFETSAKTNLNVEQVFFSIARDIKQ  167 (205)
Q Consensus       130 ~~~~~~~~~~-------~~~~~~~Sa~~~~gi~~~~~~i~~~~~~  167 (205)
                      ++.+......       ..+++++||++|.|+++++++|.+.+..
T Consensus       217 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~  261 (341)
T 2p67_A          217 HMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTA  261 (341)
T ss_dssp             HHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence            1222222221       3578999999999999999999987753

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.47  E-value=7.1e-15  Score=126.12  Aligned_cols=117  Identities=18%  Similarity=0.167  Sum_probs=78.0

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCC--CC------CCcccce--------eeEEEEEEEEECCEEEEEEEEeCCChhhhh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGS--FT------TSFITTI--------GIDFKIRTIELDGKRIKLQIWDTAGQERFR   66 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~--~~------~~~~~t~--------~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   66 (205)
                      .-||+|+|..++|||||+.+|+...  ..      .....+.        |++.....+.+..++..+.++||||+.+|.
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~   81 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL   81 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence            4579999999999999999996421  11      0000000        111122222223344678999999999999


Q ss_pred             hhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028686           67 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES  123 (205)
Q Consensus        67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~  123 (205)
                      ......++-+|++|+|+|+...-.-. ....+..+..+   ++|+++++||+|....
T Consensus        82 ~Ev~raL~~~DgavlVVDa~~GV~~q-T~~v~~~a~~~---~lp~i~~INKmDr~~a  134 (638)
T 3j25_A           82 AEVYRSLSVLDGAILLISAKDGVQAQ-TRILFHALRKM---GIPTIFFINKIDQNGI  134 (638)
T ss_dssp             HHHHHHHTTCSEEECCEESSCTTCSH-HHHHHHHHHHH---TCSCEECCEECCSSSC
T ss_pred             HHHHHHHHHhCEEEEEEeCCCCCcHH-HHHHHHHHHHc---CCCeEEEEeccccccC
Confidence            99999999999999999998742211 22233344433   5899999999997654

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.47  E-value=4.2e-13  Score=116.52  Aligned_cols=115  Identities=17%  Similarity=0.050  Sum_probs=76.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC--------CCCC----------CcccceeeEEEEEEEEEC-----CEEEEEEEEeCC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG--------SFTT----------SFITTIGIDFKIRTIELD-----GKRIKLQIWDTA   60 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~--------~~~~----------~~~~t~~~~~~~~~~~~~-----~~~~~~~i~D~~   60 (205)
                      -||+|+|..++|||||..+|+..        ....          +....+.+......+.+.     ...+.+.++|||
T Consensus        14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP   93 (709)
T 4fn5_A           14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP   93 (709)
T ss_dssp             EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence            47999999999999999999632        1111          111111111122233332     135789999999


Q ss_pred             ChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686           61 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  122 (205)
Q Consensus        61 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~  122 (205)
                      |+.+|.....+.++-+|++|+|+|+...-.... ...+.....   .++|+++++||+|...
T Consensus        94 GHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT-~~v~~~a~~---~~lp~i~~iNKiDr~~  151 (709)
T 4fn5_A           94 GHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQS-ETVWRQANK---YGVPRIVYVNKMDRQG  151 (709)
T ss_dssp             SCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH---HTCCEEEEEECSSSTT
T ss_pred             CCcccHHHHHHHHHHhCeEEEEEECCCCCchhH-HHHHHHHHH---cCCCeEEEEccccccC
Confidence            999999999999999999999999987432222 222333333   3599999999999754

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.46  E-value=1.5e-13  Score=107.82  Aligned_cols=96  Identities=17%  Similarity=0.147  Sum_probs=78.4

Q ss_pred             hhhhhhhhhhhccCCcEEEEEEeCCChh-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccC-HHHHHHHHHHh
Q 028686           62 QERFRTITTAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP-TSKGQALADEY  139 (205)
Q Consensus        62 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~-~~~~~~~~~~~  139 (205)
                      ++++..+...+++++|++++|+|+++++ ++..+..|+..+..   .++|+++|+||+||.+. ..+. .++...++...
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~-~~v~~~~~~~~~~~~~  141 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNE-EEKKELERWISIYRDA  141 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCH-HHHHHHHHHHHHHHHT
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCc-cccHHHHHHHHHHHHC
Confidence            5667778888999999999999999986 89888899987765   46999999999999642 1112 34556666777


Q ss_pred             CCcEEEEcCCCCCCHHHHHHHH
Q 028686          140 GIKFFETSAKTNLNVEQVFFSI  161 (205)
Q Consensus       140 ~~~~~~~Sa~~~~gi~~~~~~i  161 (205)
                      +++++++||+++.|+++++..+
T Consensus       142 g~~~~~~SA~~g~gi~~L~~~l  163 (302)
T 2yv5_A          142 GYDVLKVSAKTGEGIDELVDYL  163 (302)
T ss_dssp             TCEEEECCTTTCTTHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHhhc
Confidence            8999999999999999999875

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.39  E-value=5e-13  Score=115.63  Aligned_cols=155  Identities=14%  Similarity=0.110  Sum_probs=93.5

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCC-CCCccccee----eE--------------------------------------
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSF-TTSFITTIG----ID--------------------------------------   39 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~----~~--------------------------------------   39 (205)
                      ..+|+|+|.+++|||||+|+|++..+ +....+++.    ..                                      
T Consensus        51 lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g  130 (772)
T 3zvr_A           51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  130 (772)
T ss_dssp             CSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcC
Confidence            35899999999999999999999775 222111110    00                                      


Q ss_pred             --------EEEEEEEECCEEEEEEEEeCCChhh-------------hhhhhhhhc-cCCcEEEEEEeCCChhHHHHHHHH
Q 028686           40 --------FKIRTIELDGKRIKLQIWDTAGQER-------------FRTITTAYY-RGAMGILLVYDVTDESSFNNIRNW   97 (205)
Q Consensus        40 --------~~~~~~~~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~   97 (205)
                              .....+...+ ...+.++||||...             ...+...++ ..+|++++|+|++....-.+...+
T Consensus       131 ~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l  209 (772)
T 3zvr_A          131 TNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  209 (772)
T ss_dssp             STTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred             CCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence                    0000111111 12478999999432             223334444 578999999999864322222223


Q ss_pred             HHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHH----hC-CcEEEEcCCCCCCHHHHHHHHHHH
Q 028686           98 IRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADE----YG-IKFFETSAKTNLNVEQVFFSIARD  164 (205)
Q Consensus        98 ~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~----~~-~~~~~~Sa~~~~gi~~~~~~i~~~  164 (205)
                      +..+.   ..+.|+++|+||+|+.+... .. ..+.. ...    .+ .+++.+||++|.|++++++.+.+.
T Consensus       210 l~~L~---~~g~pvIlVlNKiDlv~~~~-~~-~~il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          210 AKEVD---PQGQRTIGVITKLDLMDEGT-DA-RDVLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHHC---TTCSSEEEEEECTTSSCTTC-CS-HHHHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHHH---hcCCCEEEEEeCcccCCcch-hh-HHHHH-HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            33333   34689999999999975322 21 11111 111    12 356789999999999999998863

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.38  E-value=2.4e-13  Score=99.75  Aligned_cols=106  Identities=8%  Similarity=-0.027  Sum_probs=70.3

Q ss_pred             CCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHH----HHhhc-CCCCcEEEEEeCC-CCCCCCCccCHHHH
Q 028686           59 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRN----IEQHA-SDNVNKVLVGNKA-DMDESKRAVPTSKG  132 (205)
Q Consensus        59 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~----i~~~~-~~~~piiiv~nK~-Dl~~~~~~~~~~~~  132 (205)
                      .+|+...+.+|..|+.++|++|||+|.+|++-++ ....+..    +.... ..++|++|++||. |+++   .....++
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~---Ams~~EI  184 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK---RMPCFYL  184 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC---BCCHHHH
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC---CCCHHHH
Confidence            3478899999999999999999999999975433 3333322    22221 2578999999995 6743   3455555


Q ss_pred             HHHHH----HhCCcEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 028686          133 QALAD----EYGIKFFETSAKTNLNVEQVFFSIARDIKQR  168 (205)
Q Consensus       133 ~~~~~----~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~  168 (205)
                      .+...    ...+.++.|||.+|+|+.+.++||...+..+
T Consensus       185 ~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k  224 (227)
T 3l82_B          185 AHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  224 (227)
T ss_dssp             HHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred             HHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence            44322    1347789999999999999999998776443

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.34  E-value=5.7e-12  Score=100.32  Aligned_cols=103  Identities=13%  Similarity=0.110  Sum_probs=63.2

Q ss_pred             EEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHH
Q 028686           52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK  131 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~  131 (205)
                      +.+.++||+|.....   ......+|.+++|+|....+....+..   .+.     +.+.++++||+|+... .......
T Consensus       148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~---~i~-----~~~~ivvlNK~Dl~~~-~~~s~~~  215 (337)
T 2qm8_A          148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKK---GIF-----ELADMIAVNKADDGDG-ERRASAA  215 (337)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCT---THH-----HHCSEEEEECCSTTCC-HHHHHHH
T ss_pred             CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHH---HHh-----ccccEEEEEchhccCc-hhHHHHH
Confidence            568999999975322   123468999999999865432211111   111     2356778899997431 1112222


Q ss_pred             HHHHHHHh----------CCcEEEEcCCCCCCHHHHHHHHHHHHH
Q 028686          132 GQALADEY----------GIKFFETSAKTNLNVEQVFFSIARDIK  166 (205)
Q Consensus       132 ~~~~~~~~----------~~~~~~~Sa~~~~gi~~~~~~i~~~~~  166 (205)
                      .+++....          ..+++.+||+++.|++++++.|.+...
T Consensus       216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            33333211          357889999999999999999988765

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.33  E-value=8.7e-13  Score=106.45  Aligned_cols=89  Identities=15%  Similarity=0.086  Sum_probs=50.1

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCE---------------EEEEEEEeCCChhhhhh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK---------------RIKLQIWDTAGQERFRT   67 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~~   67 (205)
                      .++|+++|.+|+|||||+|+|.+..+.....|+.+.+.....+.+++.               ...+.+||+||.....+
T Consensus        22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as  101 (396)
T 2ohf_A           22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAH  101 (396)
T ss_dssp             CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC------
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccc
Confidence            478999999999999999999988754444443333333334444332               23589999999876443


Q ss_pred             -------hhhhhccCCcEEEEEEeCCChhHH
Q 028686           68 -------ITTAYYRGAMGILLVYDVTDESSF   91 (205)
Q Consensus        68 -------~~~~~~~~~d~~i~v~d~~~~~s~   91 (205)
                             .+..+++.+|++++|+|+.+.+++
T Consensus       102 ~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i  132 (396)
T 2ohf_A          102 NGQGLGNAFLSHISACDGIFHLTRAFEDDDI  132 (396)
T ss_dssp             -----CCHHHHHHHTSSSEEEEEEC------
T ss_pred             hhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence                   345678899999999999865443

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.29  E-value=3.2e-11  Score=97.45  Aligned_cols=85  Identities=19%  Similarity=0.171  Sum_probs=57.5

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCC-CCCcccceeeEEEEEEEEECCE-------------E--EEEEEEeCCChhh--
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGK-------------R--IKLQIWDTAGQER--   64 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~-------------~--~~~~i~D~~g~~~--   64 (205)
                      -.+++++|.+|||||||+|.|.+... .....|+...+.....+.+.+.             .  ..+.+||+||...  
T Consensus        20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~   99 (392)
T 1ni3_A           20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA   99 (392)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence            36899999999999999999999765 3444443333333333444431             1  3589999999543  


Q ss_pred             -----hhhhhhhhccCCcEEEEEEeCCC
Q 028686           65 -----FRTITTAYYRGAMGILLVYDVTD   87 (205)
Q Consensus        65 -----~~~~~~~~~~~~d~~i~v~d~~~   87 (205)
                           ........++.+|++++|+|+.+
T Consensus       100 s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A          100 STGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                 22234455678999999999863

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.28  E-value=4.6e-12  Score=97.32  Aligned_cols=107  Identities=7%  Similarity=-0.027  Sum_probs=75.2

Q ss_pred             CCChhhhhhhhhhhccCCcEEEEEEeCCChhHHH---HHHHHHHHHHhhc-CCCCcEEEEEeC-CCCCCCCCccCHHHHH
Q 028686           59 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFN---NIRNWIRNIEQHA-SDNVNKVLVGNK-ADMDESKRAVPTSKGQ  133 (205)
Q Consensus        59 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~---~~~~~~~~i~~~~-~~~~piiiv~nK-~Dl~~~~~~~~~~~~~  133 (205)
                      .+|+...+.+|..|+.++|++|||+|.+|++-++   ++..+...+.... ..++|++|++|| .|+++   .....++.
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~---Ams~~EI~  270 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK---RMPCFYLA  270 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC---BCCHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC---CCCHHHHH
Confidence            4678889999999999999999999999976543   2222223332221 257999999996 58853   34555554


Q ss_pred             HHHH----HhCCcEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 028686          134 ALAD----EYGIKFFETSAKTNLNVEQVFFSIARDIKQR  168 (205)
Q Consensus       134 ~~~~----~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~  168 (205)
                      +...    ...+.++.|||.+|+|+.+.++|+.+.+..+
T Consensus       271 e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k  309 (312)
T 3l2o_B          271 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  309 (312)
T ss_dssp             HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred             HHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence            4322    1346789999999999999999999877543

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.09  E-value=4.1e-10  Score=90.61  Aligned_cols=96  Identities=22%  Similarity=0.321  Sum_probs=74.0

Q ss_pred             ChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHH----H
Q 028686           61 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQAL----A  136 (205)
Q Consensus        61 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~----~  136 (205)
                      ..++|..+...+.+.++++++|+|+++++     ..|...+.+.. .+.|+++|+||+||.+.  ....+...++    +
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~NK~DL~~~--~~~~~~~~~~l~~~~  126 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGNKADLIPK--SVKHDKVKHWMRYSA  126 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEECGGGSCT--TSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEEChhcCCc--ccCHHHHHHHHHHHH
Confidence            35678899999999999999999999864     34666666654 36899999999999642  2334444444    5


Q ss_pred             HHhCC---cEEEEcCCCCCCHHHHHHHHHHH
Q 028686          137 DEYGI---KFFETSAKTNLNVEQVFFSIARD  164 (205)
Q Consensus       137 ~~~~~---~~~~~Sa~~~~gi~~~~~~i~~~  164 (205)
                      ...++   .++++||++|.|++++++.+.+.
T Consensus       127 ~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~  157 (368)
T 3h2y_A          127 KQLGLKPEDVFLISAAKGQGIAELADAIEYY  157 (368)
T ss_dssp             HHTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence            56676   79999999999999999998664

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.01  E-value=6.9e-10  Score=89.35  Aligned_cols=97  Identities=23%  Similarity=0.279  Sum_probs=72.7

Q ss_pred             ChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHH----H
Q 028686           61 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQAL----A  136 (205)
Q Consensus        61 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~----~  136 (205)
                      .+++|+++...++..++++++|+|++++++     .|...+.+.. .+.|+++|+||+||.+.  ....+...++    +
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~NK~DLl~~--~~~~~~~~~~l~~~~  128 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGNKADLLPR--SVKYPKLLRWMRRMA  128 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEECGGGSCT--TCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEEChhcCCC--ccCHHHHHHHHHHHH
Confidence            467899999999999999999999999763     3444454444 36899999999999652  2333444444    4


Q ss_pred             HHhCC---cEEEEcCCCCCCHHHHHHHHHHHH
Q 028686          137 DEYGI---KFFETSAKTNLNVEQVFFSIARDI  165 (205)
Q Consensus       137 ~~~~~---~~~~~Sa~~~~gi~~~~~~i~~~~  165 (205)
                      ...|+   .++.+||++|.|++++++.+.+..
T Consensus       129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             HTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            55665   689999999999999999987654

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.92  E-value=2.5e-09  Score=82.95  Aligned_cols=102  Identities=17%  Similarity=0.153  Sum_probs=70.1

Q ss_pred             EEeCCChh-hhhhhhhhhccCCcEEEEEEeCCChhHHHH--HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHH
Q 028686           56 IWDTAGQE-RFRTITTAYYRGAMGILLVYDVTDESSFNN--IRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG  132 (205)
Q Consensus        56 i~D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~  132 (205)
                      +-..||+- +........+..+|++++|+|+.++.+..+  +..|+        .+.|.++|+||+||.+.   ...+..
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~---~~~~~~   71 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADA---AVTQQW   71 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCH---HHHHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCH---HHHHHH
Confidence            34578875 445556677889999999999999877643  33222        46899999999999641   111222


Q ss_pred             HHHHHHhCCcEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 028686          133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR  168 (205)
Q Consensus       133 ~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~  168 (205)
                      .++.+..+++++.+||.++.|++++++.+.+.+...
T Consensus        72 ~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~  107 (282)
T 1puj_A           72 KEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEK  107 (282)
T ss_dssp             HHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             HHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            333444578999999999999999999988877654

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.92  E-value=2.5e-09  Score=87.09  Aligned_cols=59  Identities=20%  Similarity=0.257  Sum_probs=34.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCc----ccceeeEEEEEEEEECCEEEEEEEEeCCCh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSF----ITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   62 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~   62 (205)
                      ++++|+|++|+|||||++.|++..+....    .+............-.+....+.++|++|.
T Consensus        43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~  105 (427)
T 2qag_B           43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGF  105 (427)
T ss_dssp             EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhh
Confidence            67999999999999999999987532111    121111111111111222336888999874

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.84  E-value=2.1e-10  Score=92.31  Aligned_cols=139  Identities=15%  Similarity=0.104  Sum_probs=79.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC------CCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhh--------hh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG------SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------IT   69 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~   69 (205)
                      .+|+++|.+|+|||||+|+|++.      .......|.++.+  ...+.++.   .+.++||||......        ..
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l  237 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD--MIEIPLES---GATLYDTPGIINHHQMAHFVDARDL  237 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE--EEEEECST---TCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe--eEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHH
Confidence            47999999999999999999986      2222222322222  22333332   278999999542211        11


Q ss_pred             hhhc--cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEc
Q 028686           70 TAYY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETS  147 (205)
Q Consensus        70 ~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S  147 (205)
                      ..++  +..++++++++....--+..+    ..+......+.|+++++||.|...  ..-.......+.+..|..+...+
T Consensus       238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l----~~l~~l~~~~~~~~~v~~k~d~~~--~~~~~~~~~~~~~~~g~~l~p~~  311 (369)
T 3ec1_A          238 KIITPKREIHPRVYQLNEGQTLFFGGL----ARLDYIKGGRRSFVCYMANELTVH--RTKLEKADSLYANQLGELLSPPS  311 (369)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTT----EEEEEEESSSEEEEEEECTTSCEE--EEEGGGHHHHHHHHBTTTBCSSC
T ss_pred             HHHhcccccCceEEEEcCCceEEECCE----EEEEEccCCCceEEEEecCCcccc--cccHHHHHHHHHHhcCCccCCCC
Confidence            2222  568899999987432000011    111222235689999999999754  22334445556677776655555


Q ss_pred             CCCCCC
Q 028686          148 AKTNLN  153 (205)
Q Consensus       148 a~~~~g  153 (205)
                      +.+..+
T Consensus       312 ~~~~~~  317 (369)
T 3ec1_A          312 KRYAAE  317 (369)
T ss_dssp             GGGTTT
T ss_pred             chhhhh
Confidence            544333

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.83  E-value=1.4e-10  Score=93.38  Aligned_cols=135  Identities=11%  Similarity=0.054  Sum_probs=73.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCC-----CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhh--------hh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFT-----TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TT   70 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~-----~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~   70 (205)
                      .+|+++|.+|+|||||+|+|++....     ....+..+.+.....+.+...   +.++||||......+        ..
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~  237 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK  237 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence            47999999999999999999886311     111122222222333344332   789999996432211        11


Q ss_pred             hh--ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEc
Q 028686           71 AY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETS  147 (205)
Q Consensus        71 ~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S  147 (205)
                      .+  .+..+.++++++.....-+..+    ..+......+.|+++++||.|...  ..........+.+..|..++..+
T Consensus       238 ~~~~~~~i~~~~~~l~~~~~~~~g~l----~~~d~l~~~~~~~~~v~nk~d~~~--~~~~~~~~~~~~~~~g~~l~p~~  310 (368)
T 3h2y_A          238 LITPTKEIKPMVFQLNEEQTLFFSGL----ARFDYVSGGRRAFTCHFSNRLTIH--RTKLEKADELYKNHAGDLLSPPT  310 (368)
T ss_dssp             HHSCSSCCCCEEEEECTTEEEEETTT----EEEEEEESSSEEEEEEECTTSCEE--EEEHHHHHHHHHHHBTTTBCSSC
T ss_pred             HhccccccCceEEEEcCCCEEEEcce----EEEEEecCCCceEEEEecCccccc--cccHHHHHHHHHHHhCCccCCCc
Confidence            11  2567788888877321100111    111222234689999999999754  22233444455666665444343

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.83  E-value=1.4e-09  Score=90.54  Aligned_cols=149  Identities=13%  Similarity=0.123  Sum_probs=84.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHH------hCCC---C-CCcccc-----------eeeEEEEEEEE-------------ECC
Q 028686            4 LLRIYFERGGVGKSCLLLRFS------DGSF---T-TSFITT-----------IGIDFKIRTIE-------------LDG   49 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~------~~~~---~-~~~~~t-----------~~~~~~~~~~~-------------~~~   49 (205)
                      ..|+++|.+||||||+++.|.      +.+.   . ..+.+.           .+.+++.....             +..
T Consensus       102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~~  181 (504)
T 2j37_W          102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN  181 (504)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHHH
Confidence            478999999999999999998      3321   0 001110           01112211000             000


Q ss_pred             EEEEEEEEeCCChhhhh-hhhhh---h--ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcE-EEEEeCCCCCC
Q 028686           50 KRIKLQIWDTAGQERFR-TITTA---Y--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK-VLVGNKADMDE  122 (205)
Q Consensus        50 ~~~~~~i~D~~g~~~~~-~~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-iiv~nK~Dl~~  122 (205)
                      ..+.+.|+||||..... .+...   +  ...+|.+++|+|........   .....+...    +|+ ++|+||.|...
T Consensus       182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~~----~~i~gvVlNK~D~~~  254 (504)
T 2j37_W          182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKDK----VDVASVIVTKLDGHA  254 (504)
T ss_dssp             TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHHH----HCCCCEEEECTTSCC
T ss_pred             CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHhh----cCceEEEEeCCcccc
Confidence            22568999999975321 11111   1  12689999999998754321   122233221    565 88999999753


Q ss_pred             CCCccCHHHHHHHHHHhCCcE------------------EEEcCCCCCC-HHHHHHHHHHH
Q 028686          123 SKRAVPTSKGQALADEYGIKF------------------FETSAKTNLN-VEQVFFSIARD  164 (205)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~g-i~~~~~~i~~~  164 (205)
                       ..    ..+.......+.|+                  +.+|+..|.| ++++++++.+.
T Consensus       255 -~~----g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          255 -KG----GGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             -CC----THHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             -ch----HHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence             11    11222334445443                  3468889988 99999988765

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.71  E-value=7.8e-08  Score=74.06  Aligned_cols=25  Identities=20%  Similarity=0.235  Sum_probs=22.7

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCC
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      .++++++|++|+|||||++.|++..
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCC
Confidence            5899999999999999999998754

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.65  E-value=2.7e-07  Score=75.09  Aligned_cols=157  Identities=13%  Similarity=0.093  Sum_probs=83.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCC-cccceeeEEE--EEEEEECCEEEEEEEEeCCChhhhhhhhhh-----hccC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTS-FITTIGIDFK--IRTIELDGKRIKLQIWDTAGQERFRTITTA-----YYRG   75 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~-~~~t~~~~~~--~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~-----~~~~   75 (205)
                      ..++|+|++|||||||+|.|.+...... .....+.+..  ........ .-.+.+||++|..........     -+..
T Consensus        70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~-~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~  148 (413)
T 1tq4_A           70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKMKFYE  148 (413)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred             eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccc-cCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence            3689999999999999999998532211 1111111110  00111111 114788999985421111111     1233


Q ss_pred             CcEEEEEEeCC--ChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC--C----CCCccCHHH----HHHHH----HHh
Q 028686           76 AMGILLVYDVT--DESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD--E----SKRAVPTSK----GQALA----DEY  139 (205)
Q Consensus        76 ~d~~i~v~d~~--~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~--~----~~~~~~~~~----~~~~~----~~~  139 (205)
                      .+..++ ++..  .++..    .+...+..   .+.|+++|.||.|+.  +    .-+....++    +.++.    .+.
T Consensus       149 ~~~~~~-lS~G~~~kqrv----~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~  220 (413)
T 1tq4_A          149 YDFFII-ISATRFKKNDI----DIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN  220 (413)
T ss_dssp             CSEEEE-EESSCCCHHHH----HHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCeEE-eCCCCccHHHH----HHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            455554 6765  33221    12222322   358999999999963  1    011122232    33332    122


Q ss_pred             C---CcEEEEcC--CCCCCHHHHHHHHHHHHHHHh
Q 028686          140 G---IKFFETSA--KTNLNVEQVFFSIARDIKQRL  169 (205)
Q Consensus       140 ~---~~~~~~Sa--~~~~gi~~~~~~i~~~~~~~~  169 (205)
                      +   ...+.+|+  .++.|++++.+.+.+.+.+..
T Consensus       221 g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~  255 (413)
T 1tq4_A          221 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK  255 (413)
T ss_dssp             TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred             CCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence            2   35788999  666779999999987765444

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.41  E-value=7.9e-08  Score=73.72  Aligned_cols=57  Identities=19%  Similarity=0.184  Sum_probs=35.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER   64 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   64 (205)
                      ++++++|.+|+|||||+|+|.+..... ..++.+.+.....+.++   ..+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLE---NGVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeC---CCEEEEECCCccc
Confidence            589999999999999999999876422 12222322222222332   2578999999764

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.38  E-value=2.9e-07  Score=71.31  Aligned_cols=56  Identities=21%  Similarity=0.241  Sum_probs=34.8

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   63 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~   63 (205)
                      .++|+++|.||+|||||+|+|.+.... ....|..+  .....+.++.   .+.+|||||..
T Consensus       120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T--~~~~~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          120 AIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGIT--TSQQWVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCCC
T ss_pred             CceEEEEecCCCchHHHHHHHhcCceeecCCCCCee--eeeEEEEeCC---CEEEEECcCcC
Confidence            478999999999999999999987632 22222221  1112233332   47899999964

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.34  E-value=2.6e-07  Score=70.86  Aligned_cols=93  Identities=13%  Similarity=0.066  Sum_probs=61.1

Q ss_pred             CCChhh-hhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH
Q 028686           59 TAGQER-FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD  137 (205)
Q Consensus        59 ~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~  137 (205)
                      .||+-. ........+.++|++++|+|+.++.+.....  ++ +   .  +.|.++|+||+||.+.  . ..+...++..
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l---l--~k~~iivlNK~DL~~~--~-~~~~~~~~~~   72 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F---S--RKETIILLNKVDIADE--K-TTKKWVEFFK   72 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C---T--TSEEEEEEECGGGSCH--H-HHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h---c--CCCcEEEEECccCCCH--H-HHHHHHHHHH
Confidence            466652 3344566778999999999999887654311  01 1   1  6899999999999642  1 1122233444


Q ss_pred             HhCCcEEEEcCCCCCCHHHHHHHHHH
Q 028686          138 EYGIKFFETSAKTNLNVEQVFFSIAR  163 (205)
Q Consensus       138 ~~~~~~~~~Sa~~~~gi~~~~~~i~~  163 (205)
                      ..+.++ .+||.++.|++++++.+..
T Consensus        73 ~~g~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           73 KQGKRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             HTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred             HcCCeE-EEECCCCcCHHHHHHHHHH
Confidence            557888 9999999999999887654

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.26  E-value=7.4e-07  Score=72.95  Aligned_cols=91  Identities=14%  Similarity=0.098  Sum_probs=53.1

Q ss_pred             EEEEEEeCCChhhhh-----hhhh-hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC
Q 028686           52 IKLQIWDTAGQERFR-----TITT-AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR  125 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~-----~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~  125 (205)
                      +.+.++||+|.....     .+.. .....+|.+++|+|+...+....   ....+....   .+..+|+||.|...   
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~~~---~i~gVIlTKlD~~~---  253 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKEAT---PIGSIIVTKLDGSA---  253 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHSC---TTEEEEEECCSSCS---
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHhhC---CCeEEEEECCCCcc---
Confidence            568899999953211     1110 11235789999999887543322   223333221   34568899999742   


Q ss_pred             ccCHHHHHHHHHHhCCcEEEEcCCCCCCHH
Q 028686          126 AVPTSKGQALADEYGIKFFETSAKTNLNVE  155 (205)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  155 (205)
                        ....+..+....+.|+..++.  |++++
T Consensus       254 --~gG~~ls~~~~~g~PI~fig~--Ge~vd  279 (443)
T 3dm5_A          254 --KGGGALSAVAATGAPIKFIGT--GEKID  279 (443)
T ss_dssp             --SHHHHHHHHHTTCCCEEEEEC--SSSTT
T ss_pred             --cccHHHHHHHHHCCCEEEEEc--CCChH
Confidence              123345556677888887775  54443

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.21  E-value=2.3e-06  Score=70.05  Aligned_cols=84  Identities=18%  Similarity=0.113  Sum_probs=48.3

Q ss_pred             EEEEEEeCCChhhhhh-hh---h--hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCC-c-EEEEEeCCCCCCC
Q 028686           52 IKLQIWDTAGQERFRT-IT---T--AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNV-N-KVLVGNKADMDES  123 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~-~~---~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-p-iiiv~nK~Dl~~~  123 (205)
                      +.+.++||||...... +.   .  ..+..+|.+++|+|......   .......+.    ..+ | ..+|+||.|... 
T Consensus       181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~----~~~~~i~gvVlnK~D~~~-  252 (432)
T 2v3c_C          181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK----EAVGEIGSIIVTKLDGSA-  252 (432)
T ss_dssp             CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH----TTSCSCEEEEEECSSSCS-
T ss_pred             CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh----hcccCCeEEEEeCCCCcc-
Confidence            4689999999653211 11   1  11226899999999876532   222222222    235 6 788999999742 


Q ss_pred             CCccCHHHHHHHHHHhCCcEEEEc
Q 028686          124 KRAVPTSKGQALADEYGIKFFETS  147 (205)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~S  147 (205)
                      .    ...+..+....+.++..++
T Consensus       253 ~----~g~~l~~~~~~~~pi~~ig  272 (432)
T 2v3c_C          253 K----GGGALSAVAETKAPIKFIG  272 (432)
T ss_dssp             T----THHHHHHHHHSSCCEEEEC
T ss_pred             c----hHHHHHHHHHHCCCEEEee
Confidence            1    1233446666777766553

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.13  E-value=7.9e-07  Score=69.57  Aligned_cols=92  Identities=12%  Similarity=0.144  Sum_probs=60.3

Q ss_pred             hhhhhhhccCCcEEEEEEeCCChhH-HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCc-cCHHHHHHHHHHhCCcE
Q 028686           66 RTITTAYYRGAMGILLVYDVTDESS-FNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA-VPTSKGQALADEYGIKF  143 (205)
Q Consensus        66 ~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~  143 (205)
                      ..+....+.++|.+++|+|+.++.. ...+..++....   ..++|.+||+||+||.+.... ...+...++....|.++
T Consensus        77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v  153 (307)
T 1t9h_A           77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV  153 (307)
T ss_dssp             CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred             hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeE
Confidence            3445567889999999999997653 333333333322   256899999999999652100 01233344444568899


Q ss_pred             EEEcCCCCCCHHHHHHH
Q 028686          144 FETSAKTNLNVEQVFFS  160 (205)
Q Consensus       144 ~~~Sa~~~~gi~~~~~~  160 (205)
                      +.+||.++.|+++++..
T Consensus       154 ~~~sa~~~~g~~~L~~~  170 (307)
T 1t9h_A          154 YLTSSKDQDSLADIIPH  170 (307)
T ss_dssp             EECCHHHHTTCTTTGGG
T ss_pred             EEEecCCCCCHHHHHhh
Confidence            99999998887766543

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.06  E-value=1.1e-05  Score=64.26  Aligned_cols=82  Identities=17%  Similarity=0.153  Sum_probs=54.8

Q ss_pred             hccCCcEEEEEEeCCChh-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHH---HHHhCCcEEEEc
Q 028686           72 YYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQAL---ADEYGIKFFETS  147 (205)
Q Consensus        72 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~~S  147 (205)
                      .+.++|.+++|.+.. |. +...+..++-....   .++|++||+||+||.+..   ..+....+   ....|++++.+|
T Consensus       127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~---~~~~~~~~~~~y~~~G~~v~~~S  199 (358)
T 2rcn_A          127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDE---GMDFVNEQMDIYRNIGYRVLMVS  199 (358)
T ss_dssp             EEECCCEEEEEEEST-TTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHH---HHHHHHHHHHHHHTTTCCEEECB
T ss_pred             HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCch---hHHHHHHHHHHHHhCCCcEEEEe
Confidence            467899999887764 43 34444444433332   358889999999996421   11123333   335678999999


Q ss_pred             CCCCCCHHHHHHH
Q 028686          148 AKTNLNVEQVFFS  160 (205)
Q Consensus       148 a~~~~gi~~~~~~  160 (205)
                      +.++.|++++...
T Consensus       200 a~~~~gl~~L~~~  212 (358)
T 2rcn_A          200 SHTQDGLKPLEEA  212 (358)
T ss_dssp             TTTTBTHHHHHHH
T ss_pred             cCCCcCHHHHHHh
Confidence            9999999988764

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.05  E-value=2.9e-07  Score=76.37  Aligned_cols=108  Identities=12%  Similarity=0.076  Sum_probs=63.4

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChh--hhhhhh--------hhh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE--RFRTIT--------TAY   72 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~--~~~~~~--------~~~   72 (205)
                      .+.|+++|.+||||||+.++|...-.. ...++.............+......+||..|..  +.+..+        ..+
T Consensus        39 ~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~  117 (469)
T 1bif_A           39 PTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKF  117 (469)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999764211 112222111000000011111234688999873  233333        455


Q ss_pred             ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEE
Q 028686           73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVG  115 (205)
Q Consensus        73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~  115 (205)
                      +...++.++|+|.++. +.+....|++.+...   +.+++++-
T Consensus       118 l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~---~~~vv~l~  156 (469)
T 1bif_A          118 LSEEGGHVAVFDATNT-TRERRAMIFNFGEQN---GYKTFFVE  156 (469)
T ss_dssp             HHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH---TCEEEEEE
T ss_pred             HHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc---CCcEEEEE
Confidence            6567888999999987 566666777776654   24555443

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.03  E-value=1.7e-06  Score=70.77  Aligned_cols=90  Identities=13%  Similarity=0.061  Sum_probs=53.7

Q ss_pred             EEEEEEeCCChhh--hh----hhhhhh--ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028686           52 IKLQIWDTAGQER--FR----TITTAY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES  123 (205)
Q Consensus        52 ~~~~i~D~~g~~~--~~----~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~  123 (205)
                      +.+.++||||...  ..    .....+  .-..+.+++|+|....+...+   ....+....   .+..||+||.|... 
T Consensus       180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~~---~~~gVIlTKlD~~a-  252 (433)
T 3kl4_A          180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQAS---PIGSVIITKMDGTA-  252 (433)
T ss_dssp             CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHHC---SSEEEEEECGGGCS-
T ss_pred             CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhccc---CCcEEEEecccccc-
Confidence            4578999999533  11    111111  124688999999987543322   223333322   35678999999632 


Q ss_pred             CCccCHHHHHHHHHHhCCcEEEEcCCCCCCH
Q 028686          124 KRAVPTSKGQALADEYGIKFFETSAKTNLNV  154 (205)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  154 (205)
                          ....+..+....+.|+..++.  |+++
T Consensus       253 ----~~G~als~~~~~g~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          253 ----KGGGALSAVVATGATIKFIGT--GEKI  277 (433)
T ss_dssp             ----CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred             ----cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence                233455566677899888876  5554

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.01  E-value=3e-06  Score=71.83  Aligned_cols=59  Identities=20%  Similarity=0.133  Sum_probs=37.3

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCc-----ccceeeEEEEEEEEE-CCEEEEEEEEeCCChh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSF-----ITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQE   63 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~-----~~t~~~~~~~~~~~~-~~~~~~~~i~D~~g~~   63 (205)
                      .++|+|+|.||+|||||+|+|++....-..     ..|.+....  .... ......+.++||||..
T Consensus        38 ~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~--~~~~~~~~~~~i~LiDTpGi~  102 (592)
T 1f5n_A           38 MVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMW--CVPHPKKPGHILVLLDTEGLG  102 (592)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEE--EEECSSSTTCEEEEEEECCBC
T ss_pred             CcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEe--ecccccCCCceEEEecCCCcC
Confidence            478999999999999999999987632111     222332111  1111 1122468899999965

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.00  E-value=2.2e-05  Score=67.08  Aligned_cols=23  Identities=22%  Similarity=0.138  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      .|+|+|++|||||||++.|.+..
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC
T ss_pred             eEEEECCCCChHHHHHHHHhCCC
Confidence            48999999999999999999864

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.93  E-value=2.5e-05  Score=60.83  Aligned_cols=91  Identities=14%  Similarity=0.106  Sum_probs=55.3

Q ss_pred             EEEEEEeCCChhh--hhh-hhh-----hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCC
Q 028686           52 IKLQIWDTAGQER--FRT-ITT-----AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDE  122 (205)
Q Consensus        52 ~~~~i~D~~g~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~Dl~~  122 (205)
                      +.+.++||||...  ... +..     .....+|.+++|+|.....   +.......+..    ..| ..+|.||.|...
T Consensus       181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----~~~i~gvVlnk~D~~~  253 (297)
T 1j8m_F          181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ----ASKIGTIIITKMDGTA  253 (297)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred             CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence            4589999999765  221 111     1234689999999986532   22222233322    356 678899999632


Q ss_pred             CCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHH
Q 028686          123 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ  156 (205)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  156 (205)
                           ....+..+....+.|+..++  .|+++++
T Consensus       254 -----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          254 -----KGGGALSAVAATGATIKFIG--TGEKIDE  280 (297)
T ss_dssp             -----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             -----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence                 23345567777888888776  4666654

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.57  E-value=0.00037  Score=57.17  Aligned_cols=59  Identities=25%  Similarity=0.183  Sum_probs=37.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC------------------CCC---CCcccceeeEEEEEEE--E-ECCEEEEEEEEeCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG------------------SFT---TSFITTIGIDFKIRTI--E-LDGKRIKLQIWDTA   60 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~------------------~~~---~~~~~t~~~~~~~~~~--~-~~~~~~~~~i~D~~   60 (205)
                      =|.|+|.+++|||+|+|.|++.                  .+.   .....|.|+-.....+  . .++....+.+.||+
T Consensus        69 vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllDTe  148 (447)
T 3q5d_A           69 AVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQ  148 (447)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEEEEE
T ss_pred             EEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEEcCC
Confidence            3789999999999999999863                  122   1122233422211111  1 14556889999999


Q ss_pred             Chh
Q 028686           61 GQE   63 (205)
Q Consensus        61 g~~   63 (205)
                      |..
T Consensus       149 G~~  151 (447)
T 3q5d_A          149 GTF  151 (447)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            964

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.42  E-value=8.9e-05  Score=53.30  Aligned_cols=23  Identities=26%  Similarity=0.382  Sum_probs=20.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .+++++|++|||||||++.+.+.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999765

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.27  E-value=0.00018  Score=51.13  Aligned_cols=26  Identities=19%  Similarity=0.112  Sum_probs=22.9

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhC
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      |+...|++.|.+||||||+.+.|...
T Consensus         1 m~~~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            1 MTTRMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHh
Confidence            66677999999999999999999763

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.26  E-value=0.00016  Score=51.91  Aligned_cols=22  Identities=14%  Similarity=0.202  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      -++|+|++|||||||++.|.+.
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4799999999999999999874

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.21  E-value=0.00022  Score=51.29  Aligned_cols=25  Identities=24%  Similarity=0.271  Sum_probs=21.1

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHh
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      |+...|+|.|.+||||||+.+.|..
T Consensus         1 M~~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            1 MKPLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             --CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            7778899999999999999998864

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.20  E-value=0.00019  Score=52.32  Aligned_cols=22  Identities=27%  Similarity=0.317  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .++|+|++|||||||++.|.+.
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5799999999999999999763

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.14  E-value=0.00027  Score=50.69  Aligned_cols=25  Identities=20%  Similarity=0.041  Sum_probs=20.9

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHh
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      |....|+|.|.+||||||+.+.|..
T Consensus         1 M~~~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            1 MKNKVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             --CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            5567899999999999999999865

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.14  E-value=0.00031  Score=49.87  Aligned_cols=23  Identities=22%  Similarity=0.156  Sum_probs=20.7

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      +..|++.|.+||||||+.+.|..
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEecCCCCCHHHHHHHHHh
Confidence            45689999999999999999986

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.12  E-value=0.00026  Score=51.48  Aligned_cols=22  Identities=27%  Similarity=0.363  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      -++|+|++|||||||++.|.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            4789999999999999999875

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.11  E-value=0.00024  Score=51.11  Aligned_cols=22  Identities=18%  Similarity=0.229  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .|+++|++|||||||++.|.+.
T Consensus        11 ~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           11 ILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5899999999999999999875

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.09  E-value=0.00038  Score=50.79  Aligned_cols=25  Identities=24%  Similarity=0.138  Sum_probs=21.9

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHh
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      |....|+|.|.+||||||+.+.|..
T Consensus         2 m~~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            2 KKGVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            3457899999999999999999965

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.04  E-value=0.00034  Score=51.27  Aligned_cols=22  Identities=18%  Similarity=0.203  Sum_probs=19.8

Q ss_pred             EEEECCCCCcHHHHHHHHHhCC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      ++|+|++|||||||++.+.+..
T Consensus        23 ~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           23 VVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhhC
Confidence            6899999999999999998753

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.03  E-value=0.00036  Score=51.84  Aligned_cols=23  Identities=30%  Similarity=0.359  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      -++|+|++|||||||++.|.+..
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            47899999999999999998753

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.02  E-value=0.00036  Score=51.67  Aligned_cols=23  Identities=22%  Similarity=0.312  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      .++|+|++|||||||++.|.+..
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            37899999999999999998743

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.02  E-value=0.00029  Score=50.10  Aligned_cols=19  Identities=21%  Similarity=0.302  Sum_probs=17.1

Q ss_pred             EEEECCCCCcHHHHHHHHH
Q 028686            6 RIYFERGGVGKSCLLLRFS   24 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~   24 (205)
                      ++++|++|||||||++.+.
T Consensus        12 ~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           12 VVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEECCTTSCHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHc
Confidence            6899999999999999754

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.01  E-value=0.00041  Score=51.31  Aligned_cols=22  Identities=18%  Similarity=0.178  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      ..|+++|++||||||+.+.|..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998865

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.01  E-value=0.00038  Score=51.04  Aligned_cols=23  Identities=26%  Similarity=0.179  Sum_probs=20.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      ..|+|+|++|||||||++.|.+.
T Consensus        23 ~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           23 QLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998764

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.97  E-value=0.00044  Score=48.86  Aligned_cols=23  Identities=17%  Similarity=0.106  Sum_probs=20.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      ..|+|+|++||||||+.+.|...
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999764

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=96.96  E-value=0.00044  Score=50.73  Aligned_cols=23  Identities=22%  Similarity=0.216  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      -|+|+|++||||||+++.|....
T Consensus        10 ~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A           10 LIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHST
T ss_pred             EEEEECcCCCCHHHHHHHHHhhC
Confidence            47899999999999999998753

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.95  E-value=0.0005  Score=50.50  Aligned_cols=22  Identities=14%  Similarity=0.179  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      ++|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3789999999999999999854

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.95  E-value=0.00058  Score=49.80  Aligned_cols=23  Identities=17%  Similarity=0.208  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      --|+|+|++|||||||++.|...
T Consensus        20 ~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           20 KTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECcCCCCHHHHHHHHHhh
Confidence            45789999999999999999864

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.94  E-value=0.0005  Score=48.33  Aligned_cols=23  Identities=22%  Similarity=0.200  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      -++++|+.|+|||||++.+.+.-
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            37899999999999999998754

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.94  E-value=0.0005  Score=48.37  Aligned_cols=20  Identities=20%  Similarity=0.105  Sum_probs=18.5

Q ss_pred             eEEEEECCCCCcHHHHHHHH
Q 028686            4 LLRIYFERGGVGKSCLLLRF   23 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l   23 (205)
                      +.|+|.|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999999

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.93  E-value=0.00053  Score=50.40  Aligned_cols=22  Identities=18%  Similarity=0.194  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      ++|+|+|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999954

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.93  E-value=0.0005  Score=49.70  Aligned_cols=21  Identities=29%  Similarity=0.330  Sum_probs=19.2

Q ss_pred             EEEECCCCCcHHHHHHHHHhC
Q 028686            6 RIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~   26 (205)
                      |+|+|++|||||||+++|+..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            689999999999999999754

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.93  E-value=0.0005  Score=50.22  Aligned_cols=23  Identities=22%  Similarity=0.261  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      ..|+|+|++||||||+++.|...
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            35799999999999999999764

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.92  E-value=0.00066  Score=49.50  Aligned_cols=22  Identities=23%  Similarity=0.211  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      +.|+++|++||||||+.+.|..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999999976

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.92  E-value=0.00063  Score=48.64  Aligned_cols=23  Identities=22%  Similarity=0.263  Sum_probs=20.5

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      ...|+++|.+||||||+.+.|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999864

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.92  E-value=0.00057  Score=48.09  Aligned_cols=22  Identities=23%  Similarity=0.060  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .|+|.|++||||||+.+.|...
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5799999999999999999653

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.89  E-value=0.00057  Score=49.13  Aligned_cols=21  Identities=38%  Similarity=0.417  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHh
Q 028686            5 LRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~   25 (205)
                      -++++|++||||||+++.|..
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999975

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.88  E-value=0.0007  Score=49.20  Aligned_cols=24  Identities=29%  Similarity=0.389  Sum_probs=21.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      ..|+|+|++||||||+++.|.+.-
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            468999999999999999998754

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=96.87  E-value=0.00054  Score=51.42  Aligned_cols=22  Identities=23%  Similarity=0.132  Sum_probs=19.8

Q ss_pred             EEEECCCCCcHHHHHHHHHhCC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      ++++|+.|||||||++.+.+-.
T Consensus        34 ~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           34 VSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCC
Confidence            6899999999999999998753

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.86  E-value=0.00067  Score=49.85  Aligned_cols=22  Identities=18%  Similarity=0.457  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      ++|+|+|+|||||+|...+|..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998865

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.86  E-value=0.00062  Score=49.55  Aligned_cols=21  Identities=19%  Similarity=0.292  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHh
Q 028686            5 LRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~   25 (205)
                      .|+|+|++||||||+++.|.+
T Consensus        31 ~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           31 HVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999865

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.85  E-value=0.00064  Score=49.45  Aligned_cols=22  Identities=23%  Similarity=0.101  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      .+|+|+|.+||||||+.+.|..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3689999999999999999987

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.84  E-value=0.00076  Score=48.44  Aligned_cols=23  Identities=22%  Similarity=0.141  Sum_probs=20.5

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      ...|+|.|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46789999999999999999865

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.84  E-value=0.00089  Score=47.42  Aligned_cols=22  Identities=18%  Similarity=0.305  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      -.|+++|++||||||+.+.|..
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999999865

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.83  E-value=0.00083  Score=48.19  Aligned_cols=24  Identities=13%  Similarity=0.080  Sum_probs=21.2

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhC
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      ..+|+++|.+||||||+.+.|...
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            457999999999999999999764

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.82  E-value=0.00075  Score=48.86  Aligned_cols=21  Identities=29%  Similarity=0.295  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHh
Q 028686            5 LRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~   25 (205)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999999976

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.79  E-value=0.00077  Score=50.70  Aligned_cols=21  Identities=24%  Similarity=0.368  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHH
Q 028686            4 LLRIYFERGGVGKSCLLLRFS   24 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~   24 (205)
                      ..|+|+|++||||||+++.|.
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            468999999999999999998

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.79  E-value=0.00065  Score=48.46  Aligned_cols=22  Identities=23%  Similarity=0.246  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .++++|++|+|||||++.+.+.
T Consensus        40 ~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           40 GLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             EEEECCSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998764

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.78  E-value=0.0024  Score=43.82  Aligned_cols=23  Identities=9%  Similarity=-0.038  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      ..|++.|++|+|||++++.+...
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CcEEEECCCCccHHHHHHHHHHh
Confidence            45899999999999999988654

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.78  E-value=0.00086  Score=48.74  Aligned_cols=21  Identities=24%  Similarity=0.165  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHh
Q 028686            5 LRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~   25 (205)
                      .|+++|++||||||+.+.|..
T Consensus        27 ~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           27 RIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            689999999999999999864

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.77  E-value=0.00076  Score=50.76  Aligned_cols=23  Identities=22%  Similarity=0.241  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      .++++|+.|||||||++.+.+-.
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            36899999999999999998853

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.77  E-value=0.00096  Score=48.45  Aligned_cols=24  Identities=13%  Similarity=0.304  Sum_probs=21.0

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHh
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      ..+.|+|.|.+||||||+.+.|..
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999865

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.77  E-value=0.00074  Score=48.92  Aligned_cols=22  Identities=27%  Similarity=0.294  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .++++|++|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            4789999999999999998764

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=96.77  E-value=0.0007  Score=49.53  Aligned_cols=23  Identities=13%  Similarity=0.054  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      ..|+|+|++|||||||++.|.+.
T Consensus         7 ~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            7 FVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998763

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=96.77  E-value=0.00063  Score=50.63  Aligned_cols=22  Identities=27%  Similarity=0.194  Sum_probs=19.7

Q ss_pred             EEEECCCCCcHHHHHHHHHhCC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      ++++|+.|||||||++.+.+-.
T Consensus        33 ~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           33 VSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            6899999999999999998753

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.77  E-value=0.0008  Score=48.93  Aligned_cols=23  Identities=17%  Similarity=0.137  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      ..|+|+|.+||||||+.+.|...
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999998653

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.76  E-value=0.00071  Score=53.90  Aligned_cols=24  Identities=33%  Similarity=0.414  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSF   28 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~   28 (205)
                      .++|+|++|||||||+|.|.+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            478999999999999999998643

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.75  E-value=0.00079  Score=47.77  Aligned_cols=21  Identities=24%  Similarity=0.271  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHh
Q 028686            5 LRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~   25 (205)
                      +|+|+|++||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            689999999999999999865

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.75  E-value=0.00095  Score=47.69  Aligned_cols=23  Identities=13%  Similarity=0.112  Sum_probs=20.2

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      ...|+++|++||||||+.+.|..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999999864

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.75  E-value=0.00081  Score=49.44  Aligned_cols=22  Identities=14%  Similarity=0.039  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      ++|+|.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999865

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.75  E-value=0.00087  Score=47.75  Aligned_cols=23  Identities=22%  Similarity=0.213  Sum_probs=20.1

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      ...|++.|.+||||||+.+.|..
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHH
Confidence            34689999999999999999864

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.73  E-value=0.00099  Score=47.73  Aligned_cols=21  Identities=33%  Similarity=0.468  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHh
Q 028686            5 LRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~   25 (205)
                      .|+|.|.+||||||+.+.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999865

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.73  E-value=0.0011  Score=49.89  Aligned_cols=24  Identities=21%  Similarity=0.160  Sum_probs=21.2

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHh
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      ..++|+|.|++||||||+.+.|..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999999964

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.73  E-value=0.00067  Score=48.32  Aligned_cols=25  Identities=20%  Similarity=0.066  Sum_probs=16.5

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHh
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      |....|+|.|.+||||||+.+.|..
T Consensus         3 ~~~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            3 MRSPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             --CCEEEEECCC----CHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3446789999999999999999864

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.72  E-value=0.00081  Score=50.49  Aligned_cols=22  Identities=32%  Similarity=0.311  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .++++|+.|||||||++.+.+.
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999875

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.72  E-value=0.00082  Score=49.68  Aligned_cols=22  Identities=27%  Similarity=0.338  Sum_probs=19.8

Q ss_pred             EEEECCCCCcHHHHHHHHHhCC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      ++++|+.|||||||++.+.+..
T Consensus        38 ~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           38 VNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            6899999999999999998753

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.72  E-value=0.0008  Score=51.33  Aligned_cols=22  Identities=23%  Similarity=0.114  Sum_probs=19.8

Q ss_pred             EEEECCCCCcHHHHHHHHHhCC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      ++++|+.|||||||++.+.+-.
T Consensus        35 ~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           35 ISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            6899999999999999998753

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.71  E-value=0.00093  Score=48.58  Aligned_cols=23  Identities=22%  Similarity=0.122  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      -.|+|+|++||||||+.+.|.+.
T Consensus        26 ~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           26 CVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            45889999999999999998664

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.71  E-value=0.00096  Score=47.66  Aligned_cols=22  Identities=27%  Similarity=0.434  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      -++++|++|||||||+++|...
T Consensus         8 ~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            8 LLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHh
Confidence            4789999999999999999864

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.70  E-value=0.00083  Score=51.62  Aligned_cols=22  Identities=32%  Similarity=0.403  Sum_probs=19.8

Q ss_pred             EEEECCCCCcHHHHHHHHHhCC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      ++++|+.|||||||++.+.+-.
T Consensus        37 ~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           37 TAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            6899999999999999998753

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.70  E-value=0.0011  Score=51.32  Aligned_cols=24  Identities=17%  Similarity=0.032  Sum_probs=21.0

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHh
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      ....|++.|++||||||+.+.|..
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346789999999999999999975

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.69  E-value=0.0012  Score=47.88  Aligned_cols=24  Identities=13%  Similarity=0.113  Sum_probs=21.3

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhC
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      ...|+|.|.+||||||+.+.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            367999999999999999999764

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.68  E-value=0.00089  Score=50.88  Aligned_cols=23  Identities=22%  Similarity=0.257  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      -++++|+.|||||||++.+.+..
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            36899999999999999998753

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.67  E-value=0.0011  Score=51.79  Aligned_cols=22  Identities=18%  Similarity=0.070  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .++|+|++|+|||||++.|.+-
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhhh
Confidence            5799999999999999999864

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.67  E-value=0.00093  Score=50.50  Aligned_cols=23  Identities=26%  Similarity=0.117  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      .++++|+.|||||||++.+.+..
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998753

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.66  E-value=0.00083  Score=49.44  Aligned_cols=22  Identities=18%  Similarity=0.212  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .++++|+.|||||||++.+.+.
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999999875

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.66  E-value=0.001  Score=50.73  Aligned_cols=22  Identities=27%  Similarity=0.244  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .++|+|++|||||||++.+.+.
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHHh
Confidence            4789999999999999998763

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.66  E-value=0.0009  Score=51.15  Aligned_cols=23  Identities=26%  Similarity=0.267  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      .++++|+.|||||||++.+.+-.
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            36899999999999999998753

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.66  E-value=0.0012  Score=46.29  Aligned_cols=21  Identities=19%  Similarity=-0.097  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHh
Q 028686            5 LRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~   25 (205)
                      +|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999865

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.66  E-value=0.00096  Score=49.82  Aligned_cols=23  Identities=26%  Similarity=0.284  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      .++++|+.|||||||++.+.+..
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999998753

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.65  E-value=0.0012  Score=46.43  Aligned_cols=21  Identities=10%  Similarity=0.082  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHh
Q 028686            5 LRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~   25 (205)
                      .|+|.|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999865

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.65  E-value=0.0013  Score=47.10  Aligned_cols=23  Identities=13%  Similarity=0.039  Sum_probs=20.1

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      ...|+|.|.+||||||+.+.|..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999999864

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.65  E-value=0.0011  Score=50.03  Aligned_cols=23  Identities=17%  Similarity=0.164  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      .++++|+.|||||||++.+.+-.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998753

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.65  E-value=0.00096  Score=50.93  Aligned_cols=23  Identities=22%  Similarity=0.218  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      .++++|+.|||||||++.+.+-.
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Confidence            36899999999999999998753

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.65  E-value=0.00098  Score=50.12  Aligned_cols=23  Identities=17%  Similarity=0.212  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      .++++|+.|||||||++.+.+..
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            36899999999999999998753

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.64  E-value=0.0011  Score=50.22  Aligned_cols=22  Identities=23%  Similarity=0.282  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .++++|+.|||||||++.+.+.
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3689999999999999999885

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.63  E-value=0.0015  Score=46.79  Aligned_cols=25  Identities=20%  Similarity=0.155  Sum_probs=21.1

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhC
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      ....|++.|.+||||||+.+.|...
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            3457899999999999999998653

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.62  E-value=0.0012  Score=47.40  Aligned_cols=23  Identities=13%  Similarity=0.072  Sum_probs=20.3

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      ...|+|.|.+||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999864

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.62  E-value=0.001  Score=50.53  Aligned_cols=23  Identities=22%  Similarity=0.109  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      .++++|+.|||||||++.+.+..
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36899999999999999998753

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.61  E-value=0.0012  Score=48.26  Aligned_cols=23  Identities=13%  Similarity=-0.013  Sum_probs=20.6

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      ...|+|.|.+||||||+.+.|..
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            46799999999999999999865

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.61  E-value=0.0012  Score=47.07  Aligned_cols=21  Identities=24%  Similarity=0.279  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHh
Q 028686            5 LRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~   25 (205)
                      .|+|+|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999998865

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.61  E-value=0.0011  Score=50.24  Aligned_cols=23  Identities=30%  Similarity=0.403  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      .++++|+.|||||||++.+.+..
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            36899999999999999998753

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.61  E-value=0.0013  Score=48.49  Aligned_cols=23  Identities=13%  Similarity=0.196  Sum_probs=20.4

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      .+.|+|+|.+||||||+.+.|..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999999865

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.60  E-value=0.0011  Score=50.52  Aligned_cols=22  Identities=18%  Similarity=0.055  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .++++|+.|||||||++.+.+.
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            4789999999999999999875

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.60  E-value=0.0012  Score=50.53  Aligned_cols=22  Identities=23%  Similarity=0.320  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .++++|+.|||||||++.+.+.
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3689999999999999999885

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.60  E-value=0.00071  Score=48.23  Aligned_cols=22  Identities=18%  Similarity=0.194  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .++|+|++|||||||++.|.+.
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5799999999999999999874

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.60  E-value=0.0011  Score=51.78  Aligned_cols=23  Identities=17%  Similarity=-0.050  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .-|+|+|++|||||||++.|.+.
T Consensus        91 ~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           91 FIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEECCCCchHHHHHHHHHhh
Confidence            45899999999999999998774

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.60  E-value=0.0011  Score=50.83  Aligned_cols=23  Identities=17%  Similarity=0.176  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      .++|+|+.|||||||++.+.+..
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36899999999999999998753

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.59  E-value=0.0043  Score=45.02  Aligned_cols=22  Identities=14%  Similarity=0.285  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .+++.|++|+|||++++.+...
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999998763

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.59  E-value=0.00075  Score=50.23  Aligned_cols=22  Identities=14%  Similarity=0.270  Sum_probs=14.7

Q ss_pred             EEEEECCCCCcHHHHHHHHH-hC
Q 028686            5 LRIYFERGGVGKSCLLLRFS-DG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~-~~   26 (205)
                      -++|+|++|||||||++.|. +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            47899999999999999998 54

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.58  E-value=0.0014  Score=51.04  Aligned_cols=23  Identities=35%  Similarity=0.423  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      .++++|++|||||||+|.|.+..
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTC
T ss_pred             eEEEECCCCCcHHHHHHHhcccc
Confidence            46899999999999999998754

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.58  E-value=0.0015  Score=47.20  Aligned_cols=25  Identities=16%  Similarity=-0.028  Sum_probs=22.1

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhC
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      ....|+|.|.+||||||+.+.|...
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            4577999999999999999999874

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.57  E-value=0.0011  Score=48.82  Aligned_cols=21  Identities=24%  Similarity=0.150  Sum_probs=19.4

Q ss_pred             EEEECCCCCcHHHHHHHHHhC
Q 028686            6 RIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~   26 (205)
                      ++|+|++|||||||++.+++.
T Consensus        28 ~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           28 TEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999999874

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.57  E-value=0.0011  Score=50.94  Aligned_cols=23  Identities=26%  Similarity=0.316  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      .++|+|+.|||||||++.+.+..
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            36899999999999999998753

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.56  E-value=0.0014  Score=48.49  Aligned_cols=22  Identities=23%  Similarity=0.217  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      +.|+|.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999864

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.56  E-value=0.0015  Score=47.76  Aligned_cols=23  Identities=17%  Similarity=0.043  Sum_probs=20.7

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      ...|+|.|.+||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999975

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.55  E-value=0.00046  Score=53.87  Aligned_cols=23  Identities=35%  Similarity=0.459  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      .++|+|++|||||||+|.|.+..
T Consensus       175 ~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          175 TTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHhcccc
Confidence            57999999999999999998753

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.54  E-value=0.0012  Score=50.04  Aligned_cols=23  Identities=26%  Similarity=0.248  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      .++++|+.|||||||++.+.+..
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            36899999999999999998753

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.54  E-value=0.0013  Score=52.46  Aligned_cols=23  Identities=17%  Similarity=0.131  Sum_probs=20.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      -+++|+|++|||||||++.|.+.
T Consensus       171 ~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          171 KTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999999875

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.53  E-value=0.0014  Score=50.29  Aligned_cols=21  Identities=19%  Similarity=0.229  Sum_probs=19.6

Q ss_pred             EEEECCCCCcHHHHHHHHHhC
Q 028686            6 RIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~   26 (205)
                      ++++|++|+|||||++.+.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            899999999999999999874

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.53  E-value=0.0011  Score=46.03  Aligned_cols=23  Identities=26%  Similarity=0.375  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      .++++|++|+|||+|++.+.+.-
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998743

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.53  E-value=0.0013  Score=50.26  Aligned_cols=23  Identities=26%  Similarity=0.151  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      .++++|+.|||||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            36899999999999999998753

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.52  E-value=0.0014  Score=48.55  Aligned_cols=22  Identities=23%  Similarity=0.339  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      ..|+|.|.+||||||+.+.|..
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999864

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.51  E-value=0.0017  Score=48.68  Aligned_cols=24  Identities=21%  Similarity=0.099  Sum_probs=20.8

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHh
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      ..+.|++.|++||||||+.+.|..
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999864

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.50  E-value=0.0019  Score=47.13  Aligned_cols=23  Identities=13%  Similarity=0.046  Sum_probs=20.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      ..|+|+|.+||||||+.+.|...
T Consensus        22 ~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           22 FIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            56899999999999999999774

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.49  E-value=0.0018  Score=46.45  Aligned_cols=21  Identities=19%  Similarity=0.254  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHh
Q 028686            5 LRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~   25 (205)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999866

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.48  E-value=0.0015  Score=50.86  Aligned_cols=22  Identities=41%  Similarity=0.649  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      -++++|++|||||||+|.|. ..
T Consensus       167 i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-SC
T ss_pred             EEEEECCCCCCHHHHHHHHH-Hh
Confidence            46899999999999999998 53

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.47  E-value=0.0014  Score=49.57  Aligned_cols=24  Identities=13%  Similarity=0.065  Sum_probs=21.0

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhC
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      ...|+++|.+||||||+.+.|...
T Consensus        32 ~~~i~l~G~~GsGKSTla~~L~~~   55 (253)
T 2p5t_B           32 PIAILLGGQSGAGKTTIHRIKQKE   55 (253)
T ss_dssp             CEEEEEESCGGGTTHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            467899999999999999998653

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.46  E-value=0.0021  Score=47.28  Aligned_cols=23  Identities=26%  Similarity=0.222  Sum_probs=20.9

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      .+.|+|.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999976

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.46  E-value=0.0013  Score=51.39  Aligned_cols=22  Identities=23%  Similarity=0.135  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .++|+|+.|||||||++.|.+-
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTS
T ss_pred             EEEEECCCCchHHHHHHHHHcC
Confidence            5799999999999999998774

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.46  E-value=0.0017  Score=48.85  Aligned_cols=22  Identities=18%  Similarity=0.090  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      .-|+|+|+.|||||||++.|.+
T Consensus        26 ~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           26 FLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999876

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.45  E-value=0.0017  Score=49.56  Aligned_cols=22  Identities=32%  Similarity=0.311  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .++++|+.|||||||++.+.+.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl   53 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGL   53 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999875

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.45  E-value=0.0015  Score=48.26  Aligned_cols=22  Identities=14%  Similarity=-0.026  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      ..|+|+|++||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999999864

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.43  E-value=0.0019  Score=45.87  Aligned_cols=22  Identities=14%  Similarity=0.176  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .+.++|.+|||||||+.+|...
T Consensus         6 ~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            6 VWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            4789999999999999998763

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.42  E-value=0.0018  Score=48.80  Aligned_cols=22  Identities=23%  Similarity=0.209  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .++++|++|+|||||++.+.+.
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3799999999999999999874

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.41  E-value=0.0021  Score=45.54  Aligned_cols=22  Identities=18%  Similarity=0.362  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .+++.|++|+|||++++.+...
T Consensus        45 ~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           45 NPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988764

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.41  E-value=0.0018  Score=47.65  Aligned_cols=22  Identities=18%  Similarity=0.043  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHHh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      ++|+|+|.+||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999864

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.39  E-value=0.0017  Score=51.83  Aligned_cols=22  Identities=23%  Similarity=0.264  Sum_probs=20.1

Q ss_pred             EEEECCCCCcHHHHHHHHHhCC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      ++++|++|||||||++.+.+-.
T Consensus        33 ~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           33 LFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCchHHHHHHHHhcCC
Confidence            6899999999999999998864

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.39  E-value=0.0018  Score=46.67  Aligned_cols=22  Identities=14%  Similarity=0.184  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      ..|+|.|.+||||||+.+.|..
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999865

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.39  E-value=0.0019  Score=48.88  Aligned_cols=21  Identities=14%  Similarity=0.366  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHh
Q 028686            5 LRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~   25 (205)
                      .|+|+|++|||||||.+.|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999864

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.37  E-value=0.002  Score=51.35  Aligned_cols=22  Identities=18%  Similarity=0.169  Sum_probs=20.0

Q ss_pred             EEEECCCCCcHHHHHHHHHhCC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      ++++|++|||||||++.+.+-.
T Consensus        44 ~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           44 VGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCCcHHHHHHHHhCCC
Confidence            6899999999999999998864

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.35  E-value=0.00092  Score=48.87  Aligned_cols=21  Identities=29%  Similarity=0.308  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHh
Q 028686            5 LRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~   25 (205)
                      -|+|.|.+||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            479999999999999999865

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.34  E-value=0.0028  Score=45.97  Aligned_cols=22  Identities=14%  Similarity=0.161  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      ..|+|.|.+||||||+.+.|..
T Consensus        16 ~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           16 SVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999864

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.34  E-value=0.0021  Score=51.30  Aligned_cols=22  Identities=23%  Similarity=0.261  Sum_probs=19.9

Q ss_pred             EEEECCCCCcHHHHHHHHHhCC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      ++++|++|||||||++.+.+-.
T Consensus        32 ~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           32 VALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEcCCCchHHHHHHHHHCCC
Confidence            6899999999999999998854

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.32  E-value=0.0027  Score=47.25  Aligned_cols=22  Identities=14%  Similarity=0.280  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      .+|+|+|.+||||||+.+.|..
T Consensus        17 ~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           17 VRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999865

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.31  E-value=0.0022  Score=49.99  Aligned_cols=84  Identities=15%  Similarity=0.078  Sum_probs=45.2

Q ss_pred             EEEEEeCCChhhhh------------hhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028686           53 KLQIWDTAGQERFR------------TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM  120 (205)
Q Consensus        53 ~~~i~D~~g~~~~~------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl  120 (205)
                      .+.+.|++|.....            .+........+.++++.|........+   .+..+....  + ..+++++|.|.
T Consensus       186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~---~~~~~~~~~--~-~t~iivTh~d~  259 (304)
T 1rj9_A          186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLE---QAKKFHEAV--G-LTGVIVTKLDG  259 (304)
T ss_dssp             SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHH---HHHHHHHHH--C-CSEEEEECTTS
T ss_pred             CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHH---HHHHHHHHc--C-CcEEEEECCcc
Confidence            35678999853211            111223345677888989876543222   223333222  1 34678899885


Q ss_pred             CCCCCccCHHHHHHHHHHhCCcEEEEc
Q 028686          121 DESKRAVPTSKGQALADEYGIKFFETS  147 (205)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~S  147 (205)
                      .. .    .-.+..+....+.|+..+.
T Consensus       260 ~a-~----gg~~l~i~~~~~~pi~~ig  281 (304)
T 1rj9_A          260 TA-K----GGVLIPIVRTLKVPIKFVG  281 (304)
T ss_dssp             SC-C----CTTHHHHHHHHCCCEEEEE
T ss_pred             cc-c----ccHHHHHHHHHCCCeEEEe
Confidence            32 1    1233455666777776665

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.31  E-value=0.0022  Score=51.25  Aligned_cols=22  Identities=27%  Similarity=0.288  Sum_probs=20.0

Q ss_pred             EEEECCCCCcHHHHHHHHHhCC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      ++++|++|||||||++.+.+-.
T Consensus        32 ~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           32 MALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCchHHHHHHHHhcCC
Confidence            6899999999999999998864

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.30  E-value=0.0024  Score=50.87  Aligned_cols=22  Identities=32%  Similarity=0.258  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .|+|+|++|||||||++.+++.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5899999999999999998764

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.30  E-value=0.0022  Score=51.50  Aligned_cols=22  Identities=27%  Similarity=0.383  Sum_probs=20.0

Q ss_pred             EEEECCCCCcHHHHHHHHHhCC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      ++++|++|||||||++.+.+-.
T Consensus        32 ~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           32 VVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEcCCCchHHHHHHHHHcCC
Confidence            6899999999999999998864

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.29  E-value=0.0019  Score=49.99  Aligned_cols=22  Identities=27%  Similarity=0.329  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .++++|+.|||||||++.+.+.
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4789999999999999999875

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.29  E-value=0.007  Score=49.58  Aligned_cols=58  Identities=26%  Similarity=0.197  Sum_probs=36.9

Q ss_pred             EEEECCCCCcHHHHHHHHHh------------------CCCCC---CcccceeeEEEEEEE--EE-CCEEEEEEEEeCCC
Q 028686            6 RIYFERGGVGKSCLLLRFSD------------------GSFTT---SFITTIGIDFKIRTI--EL-DGKRIKLQIWDTAG   61 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~------------------~~~~~---~~~~t~~~~~~~~~~--~~-~~~~~~~~i~D~~g   61 (205)
                      |.|+|..++|||+|+|.|+.                  ..|..   ....|.|+-.....+  .. ++..+.+.++||.|
T Consensus        70 vsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDTEG  149 (457)
T 4ido_A           70 VSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQG  149 (457)
T ss_dssp             EEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEECC
T ss_pred             EEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEeccC
Confidence            56899999999999996642                  12321   223355543322222  22 56778899999999


Q ss_pred             hh
Q 028686           62 QE   63 (205)
Q Consensus        62 ~~   63 (205)
                      ..
T Consensus       150 ~~  151 (457)
T 4ido_A          150 TF  151 (457)
T ss_dssp             BT
T ss_pred             CC
Confidence            54

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.28  E-value=0.0023  Score=51.28  Aligned_cols=22  Identities=23%  Similarity=0.262  Sum_probs=20.0

Q ss_pred             EEEECCCCCcHHHHHHHHHhCC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      ++++|++|||||||++.+.+-.
T Consensus        32 ~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           32 MILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCcHHHHHHHHHHcCC
Confidence            6899999999999999998864

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.28  E-value=0.0023  Score=51.08  Aligned_cols=22  Identities=23%  Similarity=0.093  Sum_probs=19.9

Q ss_pred             EEEECCCCCcHHHHHHHHHhCC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      ++++|++|||||||++.+.+-.
T Consensus        57 ~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           57 YGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEcCCCchHHHHHHHHhcCC
Confidence            6899999999999999998854

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.27  E-value=0.0025  Score=47.19  Aligned_cols=20  Identities=15%  Similarity=0.170  Sum_probs=17.4

Q ss_pred             EEEECCCCCcHHHHHHHHHh
Q 028686            6 RIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~   25 (205)
                      |+|+|+|||||+|...+|..
T Consensus        32 I~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           32 IFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             EEEECCTTCCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56789999999999998865

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.27  E-value=0.0022  Score=46.61  Aligned_cols=22  Identities=23%  Similarity=0.101  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHHh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      .-|+|+|.+||||||+++.|.+
T Consensus        23 ~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           23 LVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999999875

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.27  E-value=0.0029  Score=48.84  Aligned_cols=23  Identities=22%  Similarity=0.156  Sum_probs=20.5

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      +..|++.|.+||||||+.+.|..
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999999976

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.27  E-value=0.0033  Score=44.68  Aligned_cols=22  Identities=14%  Similarity=0.197  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHHh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      ..|+++|.+||||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999999876

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.26  E-value=0.0024  Score=51.22  Aligned_cols=22  Identities=18%  Similarity=0.241  Sum_probs=19.9

Q ss_pred             EEEECCCCCcHHHHHHHHHhCC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      ++++|++|||||||++.+.+-.
T Consensus        40 ~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           40 LVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCChHHHHHHHHHcCC
Confidence            6899999999999999998754

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.26  E-value=0.0029  Score=48.02  Aligned_cols=22  Identities=32%  Similarity=0.377  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHHh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      ..|++.|.+||||||+.+.|..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.26  E-value=0.0024  Score=50.31  Aligned_cols=22  Identities=18%  Similarity=0.196  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .++++|++|+|||||++.+.+.
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999999874

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.26  E-value=0.0032  Score=49.42  Aligned_cols=24  Identities=17%  Similarity=-0.136  Sum_probs=20.5

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhC
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      ++-|+|+|++|||||||++.|...
T Consensus        92 p~iigI~GpsGSGKSTl~~~L~~l  115 (321)
T 3tqc_A           92 PYIIGIAGSVAVGKSTTSRVLKAL  115 (321)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999988653

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.25  E-value=0.0022  Score=50.03  Aligned_cols=23  Identities=17%  Similarity=-0.034  Sum_probs=20.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .-|+|+|++|||||||++.|.+.
T Consensus        81 ~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           81 YIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999773

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.24  E-value=0.0031  Score=47.67  Aligned_cols=21  Identities=19%  Similarity=0.143  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHH
Q 028686            4 LLRIYFERGGVGKSCLLLRFS   24 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~   24 (205)
                      ..|+|+|++||||||+++.|.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            578999999999999999997

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.23  E-value=0.002  Score=51.20  Aligned_cols=22  Identities=18%  Similarity=0.194  Sum_probs=20.0

Q ss_pred             EEEECCCCCcHHHHHHHHHhCC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      ++++|++|||||||++.+.+-.
T Consensus        29 ~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           29 FVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEECCCCccHHHHHHHHHcCC
Confidence            6899999999999999998854

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.23  E-value=0.0034  Score=48.57  Aligned_cols=23  Identities=22%  Similarity=0.283  Sum_probs=20.0

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      ...|+|.|++|||||||++.|..
T Consensus        31 ~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           31 PLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46789999999999999988754

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.22  E-value=0.0032  Score=44.20  Aligned_cols=21  Identities=24%  Similarity=0.164  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHh
Q 028686            5 LRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~   25 (205)
                      .|+|.|.+||||||+.+.|..
T Consensus         9 ~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            9 HLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            579999999999999999865

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.22  E-value=0.0026  Score=49.47  Aligned_cols=21  Identities=19%  Similarity=0.267  Sum_probs=18.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHh
Q 028686            5 LRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~   25 (205)
                      -++++|+.||||||+++.|.+
T Consensus       102 vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          102 VIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999999865

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.21  E-value=0.0027  Score=48.60  Aligned_cols=22  Identities=23%  Similarity=0.209  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .++++|++|+|||||++.+.+.
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcChHHHHHHHHHHH
Confidence            3899999999999999999874

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.20  E-value=0.0029  Score=46.62  Aligned_cols=21  Identities=24%  Similarity=0.283  Sum_probs=18.9

Q ss_pred             EEEECCCCCcHHHHHHHHHhC
Q 028686            6 RIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~   26 (205)
                      ++++|++|+|||||+..+...
T Consensus        26 ~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           26 IALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHH
Confidence            688999999999999999854

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.19  E-value=0.0029  Score=50.72  Aligned_cols=22  Identities=27%  Similarity=0.244  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .++|+|++||||||+++.|.+.
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4899999999999999999763

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.19  E-value=0.0036  Score=47.22  Aligned_cols=23  Identities=17%  Similarity=0.043  Sum_probs=20.6

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      .+.|+|.|.+||||||+.+.|..
T Consensus        22 ~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           22 PFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998865

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.19  E-value=0.0027  Score=46.59  Aligned_cols=25  Identities=20%  Similarity=0.119  Sum_probs=21.0

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHh
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      |..+.|++.|.+||||||+.+.|..
T Consensus         1 m~~~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            1 MKAINIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             --CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            6677899999999999999998865

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=96.16  E-value=0.012  Score=42.42  Aligned_cols=85  Identities=14%  Similarity=0.056  Sum_probs=55.8

Q ss_pred             EEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCCCCCccCH
Q 028686           52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA--SDNVNKVLVGNKADMDESKRAVPT  129 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piiiv~nK~Dl~~~~~~~~~  129 (205)
                      +.+.++|+|+..  .......+..+|.++++...+...  ..+..+++.+....  .++.++.+|.|+.|-..    ...
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~----~~~  147 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA----TML  147 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE----EEE
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc----hHH
Confidence            568899999865  233445566799999998876554  66666666665543  24578899999998421    233


Q ss_pred             HHHHHHHHHhCCcEE
Q 028686          130 SKGQALADEYGIKFF  144 (205)
Q Consensus       130 ~~~~~~~~~~~~~~~  144 (205)
                      .+..++.+.++.+++
T Consensus       148 ~~~~~~l~~~~~~vl  162 (206)
T 4dzz_A          148 NVLKESIKDTGVKAF  162 (206)
T ss_dssp             HHHHHHHHHHTCCBC
T ss_pred             HHHHHHHHHcCCcee
Confidence            455566666665544

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.16  E-value=0.0038  Score=45.22  Aligned_cols=24  Identities=21%  Similarity=0.088  Sum_probs=20.8

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHh
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      |.. .|+|.|.+||||||+.+.|..
T Consensus         1 m~~-~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            1 MRG-IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             CCS-EEEEECSTTSSHHHHHHHHHH
T ss_pred             CCe-EEEEECCCCCCHHHHHHHHHH
Confidence            444 689999999999999999865

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.16  E-value=0.0026  Score=45.00  Aligned_cols=23  Identities=22%  Similarity=0.251  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      -.++|.|++|+|||++++.+...
T Consensus        44 ~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           44 NNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             CEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            35799999999999999988664

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.16  E-value=0.0029  Score=49.83  Aligned_cols=91  Identities=12%  Similarity=0.109  Sum_probs=51.7

Q ss_pred             EEEEEeCCChhhhhh-hh---hh--hccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCc
Q 028686           53 KLQIWDTAGQERFRT-IT---TA--YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA  126 (205)
Q Consensus        53 ~~~i~D~~g~~~~~~-~~---~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~  126 (205)
                      .+.++|++|...... +.   ..  ..-..|-.+++.|....+   ++......+....   -..+++++|.|...    
T Consensus       213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~---~it~iilTKlD~~a----  282 (328)
T 3e70_C          213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV---KIDGIILTKLDADA----  282 (328)
T ss_dssp             SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS---CCCEEEEECGGGCS----
T ss_pred             hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc---CCCEEEEeCcCCcc----
Confidence            356789998643211 11   10  111367888999976653   2223333443322   23477889998522    


Q ss_pred             cCHHHHHHHHHHhCCcEEEEcCCCCCCHHH
Q 028686          127 VPTSKGQALADEYGIKFFETSAKTNLNVEQ  156 (205)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  156 (205)
                       ..-.+..+....+.|+..++  +|+++++
T Consensus       283 -~~G~~l~~~~~~~~pi~~i~--~Ge~v~d  309 (328)
T 3e70_C          283 -RGGAALSISYVIDAPILFVG--VGQGYDD  309 (328)
T ss_dssp             -CCHHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred             -chhHHHHHHHHHCCCEEEEe--CCCCccc
Confidence             12345566777888888887  6666654

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.15  E-value=0.0025  Score=50.23  Aligned_cols=23  Identities=17%  Similarity=0.095  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      .++|+|++|||||||++.|.+.-
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47999999999999999998753

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.14  E-value=0.0026  Score=50.77  Aligned_cols=22  Identities=18%  Similarity=0.286  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .++|+|+.|||||||++.|.+.
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5799999999999999999875

>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}

Probab=96.12  E-value=0.008  Score=44.66  Aligned_cols=24  Identities=17%  Similarity=0.025  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      +.|++-|.++.|||.|++++++..
T Consensus        30 ilvl~~~~~~~~~~~~~~~lf~~~   53 (233)
T 3uc9_A           30 ILVLSDHPHNFLKTQFLQDLFHCS   53 (233)
T ss_dssp             EEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred             eEEEecCcccccHHHHHHHHhccc
Confidence            445555999999999999999874

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.11  E-value=0.0037  Score=46.16  Aligned_cols=23  Identities=9%  Similarity=0.016  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      -.++|.|++|+|||+|++.+...
T Consensus        53 ~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           53 QAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999998763

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=96.10  E-value=0.0039  Score=49.78  Aligned_cols=21  Identities=24%  Similarity=0.414  Sum_probs=19.5

Q ss_pred             ceEEEEECCCCCcHHHHHHHH
Q 028686            3 FLLRIYFERGGVGKSCLLLRF   23 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l   23 (205)
                      .+||+|+|.+|||||||++++
T Consensus        33 ~~killlG~~~SGKST~~kq~   53 (362)
T 1zcb_A           33 LVKILLLGAGESGKSTFLKQM   53 (362)
T ss_dssp             CEEEEEECSTTSSHHHHHHHH
T ss_pred             ccEEEEECCCCCcHHHHHHHH
Confidence            589999999999999999886

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.10  E-value=0.0033  Score=47.37  Aligned_cols=23  Identities=17%  Similarity=0.130  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      -.+++.|++|+|||++++.+.+.
T Consensus        46 ~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            35899999999999999999764

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.09  E-value=0.002  Score=51.34  Aligned_cols=22  Identities=14%  Similarity=0.128  Sum_probs=20.0

Q ss_pred             EEEECCCCCcHHHHHHHHHhCC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      ++++|++|||||||++.+.+-.
T Consensus        34 ~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           34 FGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEECCCCCcHHHHHHHHhCCC
Confidence            6899999999999999998864

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.08  E-value=0.0025  Score=47.38  Aligned_cols=23  Identities=22%  Similarity=0.199  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .-|+|.|..||||||+++.|.+.
T Consensus        21 ~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           21 FTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            35899999999999999998775

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.07  E-value=0.004  Score=45.04  Aligned_cols=23  Identities=26%  Similarity=0.216  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      -.+++.|++|+|||+|+..+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998764

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.05  E-value=0.0035  Score=47.45  Aligned_cols=22  Identities=14%  Similarity=-0.011  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      -.|+|+|++||||||+.+.|..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999865

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.05  E-value=0.0032  Score=50.81  Aligned_cols=22  Identities=36%  Similarity=0.285  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .++++|++|||||||++.+.+-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            3689999999999999999874

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.03  E-value=0.0052  Score=45.78  Aligned_cols=23  Identities=13%  Similarity=0.183  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      ..|+|.|.+||||||+++.|...
T Consensus        27 ~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           27 AFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            56899999999999999999764

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.02  E-value=0.0036  Score=50.96  Aligned_cols=22  Identities=23%  Similarity=0.140  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .++|+|+.|||||||++.+++.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            3789999999999999999874

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.02  E-value=0.004  Score=45.57  Aligned_cols=22  Identities=23%  Similarity=0.188  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      ..|++.|.+||||||+.+.|..
T Consensus        26 ~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           26 LTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998865

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=95.99  E-value=0.0042  Score=45.40  Aligned_cols=21  Identities=24%  Similarity=0.208  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHh
Q 028686            5 LRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~   25 (205)
                      -++++|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            368999999999999999987

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=95.99  E-value=0.0035  Score=48.33  Aligned_cols=21  Identities=19%  Similarity=0.203  Sum_probs=19.1

Q ss_pred             EEEECCCCCcHHHHHHHHHhC
Q 028686            6 RIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~   26 (205)
                      ++|+|++|+|||||+..+.+.
T Consensus        38 ~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           38 IMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHH
Confidence            689999999999999998765

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=95.96  E-value=0.0031  Score=49.41  Aligned_cols=27  Identities=22%  Similarity=0.193  Sum_probs=21.1

Q ss_pred             CcceE-EEEECCCCCcHHHHHHHHHhCC
Q 028686            1 MLFLL-RIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         1 ~~~i~-i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      |..+. ++|+|..|||||||++.|.+..
T Consensus         1 m~~i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            1 MNPIAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             -CCEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             CCcccEEEEEecCCCCHHHHHHHHHhhc
Confidence            44444 4678999999999999999753

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=95.94  E-value=0.0044  Score=46.03  Aligned_cols=22  Identities=14%  Similarity=0.113  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      -++|+|++|+|||||+..++..
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            3689999999999999999874

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=95.93  E-value=0.0042  Score=49.49  Aligned_cols=21  Identities=19%  Similarity=0.267  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHh
Q 028686            5 LRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~   25 (205)
                      -|+++|+.||||||+++.|.+
T Consensus       159 vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          159 VIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCChHHHHHHHHHh
Confidence            478999999999999999865

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=95.90  E-value=0.0059  Score=44.22  Aligned_cols=23  Identities=17%  Similarity=0.121  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      ..|++.|.+||||||+.+.|...
T Consensus        13 ~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           13 MVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            56899999999999999998763

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=95.89  E-value=0.0037  Score=51.58  Aligned_cols=22  Identities=14%  Similarity=0.084  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .++|+|+.|||||||++.|++.
T Consensus       140 ~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          140 RVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            5799999999999999999875

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=95.88  E-value=0.004  Score=52.01  Aligned_cols=23  Identities=17%  Similarity=-0.029  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      .++|+|++||||||+++.|++.-
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            48999999999999999998753

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=95.87  E-value=0.0046  Score=49.09  Aligned_cols=23  Identities=39%  Similarity=0.450  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      +++++|+.|+|||||++.+.+..
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999999864

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=95.87  E-value=0.0055  Score=47.09  Aligned_cols=23  Identities=22%  Similarity=0.260  Sum_probs=20.4

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      .+.|+|.|.+||||||+.+.|..
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999973

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.85  E-value=0.0057  Score=45.60  Aligned_cols=22  Identities=18%  Similarity=0.193  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      +++.|+|+|||||||+...|..
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cceeeECCCCCCHHHHHHHHHH
Confidence            6899999999999999998854

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=95.84  E-value=0.0048  Score=51.20  Aligned_cols=92  Identities=16%  Similarity=0.147  Sum_probs=48.3

Q ss_pred             EEEEEEeCCChhhhhh----hhhhh---c-----cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 028686           52 IKLQIWDTAGQERFRT----ITTAY---Y-----RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD  119 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~----~~~~~---~-----~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D  119 (205)
                      +.+.++||+|......    ....+   +     ...+-+++|.|.+..+...   .....+....  + ...+|++|.|
T Consensus       376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al---~~ak~f~~~~--~-itgvIlTKLD  449 (503)
T 2yhs_A          376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV---SQAKLFHEAV--G-LTGITLTKLD  449 (503)
T ss_dssp             CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH---HHHHHHHHHT--C-CSEEEEECGG
T ss_pred             CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHH---HHHHHHHhhc--C-CCEEEEEcCC
Confidence            3477899999642111    01111   1     1245678898877653221   2223333322  1 2357889998


Q ss_pred             CCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHH
Q 028686          120 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ  156 (205)
Q Consensus       120 l~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  156 (205)
                      -.   .  ..-.+..+....+.++..+.  +|+++++
T Consensus       450 ~t---a--kgG~~lsi~~~~~~PI~fig--~Ge~vdD  479 (503)
T 2yhs_A          450 GT---A--KGGVIFSVADQFGIPIRYIG--VGERIED  479 (503)
T ss_dssp             GC---S--CCTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             Cc---c--cccHHHHHHHHHCCCEEEEe--cCCChhh
Confidence            52   1  22345666777788876643  3444443

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.84  E-value=0.0061  Score=41.82  Aligned_cols=24  Identities=8%  Similarity=0.033  Sum_probs=21.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      ..|++.|++|+|||++++.+....
T Consensus        25 ~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           25 IAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCEEEECCCCCCHHHHHHHHHHhC
Confidence            458999999999999999997754

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=95.81  E-value=0.0052  Score=46.94  Aligned_cols=23  Identities=17%  Similarity=0.184  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      -.+++.|++|+|||+|++.+...
T Consensus        52 ~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           52 KGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             SEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999999764

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=95.80  E-value=0.0051  Score=43.72  Aligned_cols=20  Identities=20%  Similarity=0.026  Sum_probs=18.0

Q ss_pred             EEEECCCCCcHHHHHHHHHh
Q 028686            6 RIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~   25 (205)
                      .+|+|+.|+|||||+..+..
T Consensus        29 ~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           29 TAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            57999999999999999865

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=95.80  E-value=0.0054  Score=46.11  Aligned_cols=22  Identities=18%  Similarity=0.205  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .|++.|++|+|||++++.+...
T Consensus        41 ~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           41 GALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4799999999999999999763

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.80  E-value=0.0053  Score=47.25  Aligned_cols=23  Identities=22%  Similarity=0.182  Sum_probs=20.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      -.+++.|++|+|||++++.+...
T Consensus        55 ~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           55 KGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            36899999999999999999874

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.80  E-value=0.0056  Score=44.96  Aligned_cols=22  Identities=23%  Similarity=0.439  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      -++|.|++|+|||++++.+...
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~~   68 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAKG   68 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998653

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.75  E-value=0.0046  Score=45.32  Aligned_cols=22  Identities=18%  Similarity=0.229  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .+++.|+||+|||+++..+++.
T Consensus        60 ~ili~GPPGtGKTt~a~ala~~   81 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIHF   81 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999888763

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.72  E-value=0.0059  Score=49.02  Aligned_cols=21  Identities=14%  Similarity=0.166  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHh
Q 028686            5 LRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~   25 (205)
                      .++++|++|+|||||++.|.+
T Consensus       171 ~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          171 YWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            578999999999999999986

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.71  E-value=0.0081  Score=46.91  Aligned_cols=26  Identities=19%  Similarity=0.075  Sum_probs=22.1

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhC
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      |+..-|+|+|++|||||+|...|...
T Consensus         1 m~~~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            1 MKEKLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             -CCEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CCCcEEEEECCCcCCHHHHHHHHHHh
Confidence            56667899999999999999999764

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.69  E-value=0.0061  Score=47.23  Aligned_cols=22  Identities=18%  Similarity=0.354  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .|++.|++|+|||+|++.+.+.
T Consensus        51 ~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           51 GVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCcCHHHHHHHHHHH
Confidence            4899999999999999999874

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.68  E-value=0.0057  Score=47.28  Aligned_cols=23  Identities=22%  Similarity=0.063  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .-+++.|+||+|||+|++.+...
T Consensus        37 ~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           37 LILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            45778899999999999999764

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.67  E-value=0.0082  Score=44.69  Aligned_cols=23  Identities=13%  Similarity=-0.012  Sum_probs=20.4

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      ...|+|+|.+||||||+.+.|..
T Consensus        16 ~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           16 TIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998875

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.66  E-value=0.12  Score=40.17  Aligned_cols=21  Identities=14%  Similarity=0.176  Sum_probs=17.0

Q ss_pred             EEEECCCCCcHHHHHHHHHhC
Q 028686            6 RIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~   26 (205)
                      +++.|++|+|||++++.+...
T Consensus        51 ~L~~G~~G~GKT~la~~la~~   71 (324)
T 3u61_B           51 ILHSPSPGTGKTTVAKALCHD   71 (324)
T ss_dssp             EEECSSTTSSHHHHHHHHHHH
T ss_pred             EEeeCcCCCCHHHHHHHHHHH
Confidence            345566999999999999764

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.64  E-value=0.0064  Score=47.46  Aligned_cols=22  Identities=23%  Similarity=0.279  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .+++.|++|+|||+|++.+.+.
T Consensus        39 ~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           39 PIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             SEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999998764

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=95.63  E-value=0.0063  Score=49.84  Aligned_cols=23  Identities=35%  Similarity=0.317  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      +++++|++|+|||||++.+.+..
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            57999999999999999998864

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.57  E-value=0.0097  Score=46.67  Aligned_cols=23  Identities=17%  Similarity=0.232  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      ..|+|+|++|||||||...|...
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~   28 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADA   28 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999763

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.50  E-value=0.0073  Score=46.19  Aligned_cols=20  Identities=35%  Similarity=0.552  Sum_probs=18.4

Q ss_pred             EEEECCCCCcHHHHHHHHHh
Q 028686            6 RIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~   25 (205)
                      ++|+|++|+|||||+..++.
T Consensus        33 ~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           33 GALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            68999999999999999875

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=95.49  E-value=0.0077  Score=49.85  Aligned_cols=21  Identities=24%  Similarity=0.324  Sum_probs=18.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHh
Q 028686            5 LRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~   25 (205)
                      -++|+|+.|||||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            368999999999999999865

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.48  E-value=0.011  Score=43.51  Aligned_cols=25  Identities=24%  Similarity=0.106  Sum_probs=20.9

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHh
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      |.-.-|+|.|.+||||||+++.|..
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHH
Confidence            4556789999999999999999854

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.46  E-value=0.0085  Score=50.39  Aligned_cols=23  Identities=17%  Similarity=0.114  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      .++++|+.|||||||++.|.+..
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998854

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.45  E-value=0.0083  Score=46.34  Aligned_cols=21  Identities=19%  Similarity=0.365  Sum_probs=18.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHh
Q 028686            5 LRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~   25 (205)
                      .++|.|++|+|||++++.+..
T Consensus        69 ~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           69 HMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999986654

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.44  E-value=0.0079  Score=48.90  Aligned_cols=23  Identities=17%  Similarity=0.140  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .-|+++|.+||||||+.++|...
T Consensus       259 ~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          259 EVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTGG
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            45889999999999999998753

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.44  E-value=0.0097  Score=45.21  Aligned_cols=23  Identities=13%  Similarity=0.161  Sum_probs=20.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      -.+++.|++|+|||++++.+...
T Consensus        65 ~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           65 VSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHH
Confidence            46899999999999999999774

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.44  E-value=0.0083  Score=48.93  Aligned_cols=22  Identities=18%  Similarity=0.336  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      -|++.|+||+|||+|++++.+.
T Consensus       208 GiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          208 GVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             EEEEESCTTTTHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999874

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.43  E-value=0.0085  Score=48.95  Aligned_cols=23  Identities=17%  Similarity=0.186  Sum_probs=20.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      -.|++.|+||+|||+|++++.+.
T Consensus       216 rGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          216 KGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeeEEECcCCCCHHHHHHHHHHH
Confidence            35899999999999999999874

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=95.40  E-value=0.0099  Score=47.30  Aligned_cols=21  Identities=19%  Similarity=0.309  Sum_probs=19.4

Q ss_pred             ceEEEEECCCCCcHHHHHHHH
Q 028686            3 FLLRIYFERGGVGKSCLLLRF   23 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l   23 (205)
                      .+||+++|.++|||||+++++
T Consensus         9 ~~k~lllG~~~sGKsT~~kq~   29 (354)
T 2xtz_A            9 IRKLLLLGAGESGKSTIFKQI   29 (354)
T ss_dssp             EEEEEEECSTTSSHHHHHHHH
T ss_pred             ceeEEEECCCCCcHHHHHHHH
Confidence            479999999999999999887

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.39  E-value=0.0092  Score=45.93  Aligned_cols=23  Identities=22%  Similarity=0.218  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      -.+++.|++|+|||++++.+...
T Consensus        51 ~~vll~G~~GtGKT~la~~la~~   73 (310)
T 1ofh_A           51 KNILMIGPTGVGKTEIARRLAKL   73 (310)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999998764

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.38  E-value=0.0092  Score=46.75  Aligned_cols=22  Identities=27%  Similarity=0.279  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .|++.|+||+|||+|++.+...
T Consensus        47 ~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           47 GILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             EEEEESSSSSCHHHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHHH
Confidence            5899999999999999999874

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=95.35  E-value=0.008  Score=51.04  Aligned_cols=22  Identities=23%  Similarity=0.179  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .++++|+.|||||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~  392 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRF  392 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhc
Confidence            5799999999999999999875

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=95.35  E-value=0.011  Score=40.91  Aligned_cols=19  Identities=32%  Similarity=0.431  Sum_probs=17.1

Q ss_pred             EEEECCCCCcHHHHHHHHH
Q 028686            6 RIYFERGGVGKSCLLLRFS   24 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~   24 (205)
                      .+|+|+.|+||||++..+.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4789999999999999975

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.35  E-value=0.0094  Score=48.73  Aligned_cols=23  Identities=17%  Similarity=0.182  Sum_probs=20.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      --|++.|+||+|||+|++++.+.
T Consensus       216 rGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          216 KGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999999874

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=95.33  E-value=0.0093  Score=50.64  Aligned_cols=22  Identities=27%  Similarity=0.256  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .++++|+.|||||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRF  392 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999875

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.32  E-value=0.011  Score=43.13  Aligned_cols=24  Identities=29%  Similarity=0.266  Sum_probs=21.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      ..|+|+|++|+|||+|...|....
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            458999999999999999998754

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.31  E-value=0.0087  Score=50.32  Aligned_cols=22  Identities=23%  Similarity=0.292  Sum_probs=19.9

Q ss_pred             EEEECCCCCcHHHHHHHHHhCC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      ++++|+.|||||||++.|.+..
T Consensus        28 ~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           28 LGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCC
Confidence            6899999999999999998753

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=95.31  E-value=0.0098  Score=42.59  Aligned_cols=21  Identities=14%  Similarity=-0.037  Sum_probs=19.3

Q ss_pred             EEEECCCCCcHHHHHHHHHhC
Q 028686            6 RIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~   26 (205)
                      ++|+|.++||||+|..+|...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            789999999999999999864

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.30  E-value=0.0089  Score=47.36  Aligned_cols=22  Identities=14%  Similarity=0.153  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .++|.|++|+|||+|++.+.+.
T Consensus        47 ~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           47 NIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998764

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.28  E-value=0.0095  Score=44.24  Aligned_cols=20  Identities=20%  Similarity=0.184  Sum_probs=17.6

Q ss_pred             EEEECCCCCcHHHHHHHHHh
Q 028686            6 RIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~   25 (205)
                      ++++|++|+|||||+..++.
T Consensus        26 ~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           26 VLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            68999999999999887754

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.28  E-value=0.0084  Score=47.23  Aligned_cols=20  Identities=15%  Similarity=0.360  Sum_probs=18.8

Q ss_pred             EEEECCCCCcHHHHHHHHHh
Q 028686            6 RIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~   25 (205)
                      +++.|++|+||||+++.+.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999999877

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.26  E-value=0.013  Score=49.97  Aligned_cols=23  Identities=22%  Similarity=0.239  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      -++++|+.|+|||||++.|.+..
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            37899999999999999998754

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.26  E-value=0.012  Score=46.09  Aligned_cols=23  Identities=22%  Similarity=0.209  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      -.|++.|+||+|||+|++.+...
T Consensus        52 ~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           52 SGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999999764

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.22  E-value=0.011  Score=45.64  Aligned_cols=22  Identities=23%  Similarity=0.339  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .+++.|++|+|||++++.+...
T Consensus        49 ~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           49 SFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHHH
Confidence            5899999999999999998764

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.22  E-value=0.011  Score=47.81  Aligned_cols=22  Identities=23%  Similarity=0.244  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      -|++.|+||+|||+|++.+.+.
T Consensus       184 GvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          184 GVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CEEEESCSSSSHHHHHHHHHHH
T ss_pred             ceEEeCCCCCCHHHHHHHHHHh
Confidence            5899999999999999999874

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.22  E-value=0.012  Score=45.74  Aligned_cols=23  Identities=26%  Similarity=0.303  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      -.+++.|++|+|||+|+..+...
T Consensus       153 ~~lll~G~~GtGKT~La~aia~~  175 (308)
T 2qgz_A          153 KGLYLYGDMGIGKSYLLAAMAHE  175 (308)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999988763

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.22  E-value=0.011  Score=46.53  Aligned_cols=21  Identities=14%  Similarity=0.480  Sum_probs=19.2

Q ss_pred             EEEECCCCCcHHHHHHHHHhC
Q 028686            6 RIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~   26 (205)
                      +++.|++|+||||+++.+.+.
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998775

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.21  E-value=0.01  Score=45.98  Aligned_cols=85  Identities=14%  Similarity=0.111  Sum_probs=46.3

Q ss_pred             EEEEEEeCCChhhhhh--h--hhhhcc--CCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC
Q 028686           52 IKLQIWDTAGQERFRT--I--TTAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR  125 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~--~--~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~  125 (205)
                      ..+.++||+|......  +  ....+.  ..+..++|+|.+..  ...+.++.+.+..   -+ ..-+|.||.|...   
T Consensus       183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~---l~-~~giVltk~D~~~---  253 (296)
T 2px0_A          183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS---VP-VNQYIFTKIDETT---  253 (296)
T ss_dssp             SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS---SC-CCEEEEECTTTCS---
T ss_pred             CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc---CC-CCEEEEeCCCccc---
Confidence            4588999999654321  1  112232  35677888877642  2333333333321   11 2346679999642   


Q ss_pred             ccCHHHHHHHHHHhCCcEEEEc
Q 028686          126 AVPTSKGQALADEYGIKFFETS  147 (205)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~S  147 (205)
                        ....+..+....++|+..++
T Consensus       254 --~~g~~~~~~~~~~~pi~~i~  273 (296)
T 2px0_A          254 --SLGSVFNILAESKIGVGFMT  273 (296)
T ss_dssp             --CCHHHHHHHHTCSCCCSEEC
T ss_pred             --chhHHHHHHHHHCcCEEEEE
Confidence              12355666777787765554

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.20  E-value=0.011  Score=47.00  Aligned_cols=23  Identities=22%  Similarity=0.249  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      .++|.|++|+|||+|++.+.+.-
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            58999999999999999997643

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.17  E-value=0.0088  Score=45.30  Aligned_cols=24  Identities=13%  Similarity=-0.107  Sum_probs=20.7

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhC
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      ...|+|.|.+||||||+++.|...
T Consensus        24 ~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           24 IKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            357899999999999999988654

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.16  E-value=0.015  Score=46.22  Aligned_cols=22  Identities=23%  Similarity=0.291  Sum_probs=19.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      .+|+++|++|+||||+...|..
T Consensus        25 ~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           25 VCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHH
Confidence            5799999999999999987754

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.16  E-value=0.012  Score=45.83  Aligned_cols=86  Identities=21%  Similarity=0.180  Sum_probs=47.6

Q ss_pred             EEEEEEeCCChhhhhh-h------hhhhc-----cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 028686           52 IKLQIWDTAGQERFRT-I------TTAYY-----RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD  119 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~-~------~~~~~-----~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D  119 (205)
                      ..+.++|+||...... +      ....+     ...+.+++|.|.....  +.+.+ ...+....   -..-+|.||.|
T Consensus       187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~-a~~~~~~~---~i~gvVlTk~D  260 (306)
T 1vma_A          187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQ-AKIFKEAV---NVTGIILTKLD  260 (306)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHH-HHHHHHHS---CCCEEEEECGG
T ss_pred             CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHH-HHHHHhcC---CCCEEEEeCCC
Confidence            3478999998532111 0      01111     2477888999887432  22222 22333221   13356789999


Q ss_pred             CCCCCCccCHHHHHHHHHHhCCcEEEEcC
Q 028686          120 MDESKRAVPTSKGQALADEYGIKFFETSA  148 (205)
Q Consensus       120 l~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  148 (205)
                      ...     ..-.+..+....+.|+..+..
T Consensus       261 ~~~-----~gG~~l~~~~~~~~Pi~~i~~  284 (306)
T 1vma_A          261 GTA-----KGGITLAIARELGIPIKFIGV  284 (306)
T ss_dssp             GCS-----CTTHHHHHHHHHCCCEEEEEC
T ss_pred             Ccc-----chHHHHHHHHHHCCCEEEEeC
Confidence            532     123467777888888777754

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=95.15  E-value=0.013  Score=43.83  Aligned_cols=25  Identities=20%  Similarity=0.125  Sum_probs=20.6

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHh
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      |...-|+|.|.+||||||+++.|..
T Consensus        25 ~~~~~i~~eG~~GsGKsT~~~~l~~   49 (236)
T 3lv8_A           25 MNAKFIVIEGLEGAGKSTAIQVVVE   49 (236)
T ss_dssp             -CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3446789999999999999999854

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.14  E-value=0.0092  Score=50.84  Aligned_cols=22  Identities=14%  Similarity=0.052  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .++++|++|||||||++.+.+-
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~  404 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRF  404 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            5799999999999999999774

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.13  E-value=0.0057  Score=46.32  Aligned_cols=22  Identities=18%  Similarity=0.157  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .+++.|++|+|||+|++.+...
T Consensus        46 ~vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            3789999999999999999763

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.08  E-value=0.012  Score=50.18  Aligned_cols=23  Identities=13%  Similarity=0.104  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      .++++|+.|+|||||++.|.+..
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            47899999999999999998754

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.07  E-value=0.013  Score=45.99  Aligned_cols=21  Identities=19%  Similarity=0.542  Sum_probs=19.1

Q ss_pred             EEEECCCCCcHHHHHHHHHhC
Q 028686            6 RIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~   26 (205)
                      +++.|++|+|||++++.+...
T Consensus        61 ~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999998764

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.06  E-value=0.017  Score=45.54  Aligned_cols=23  Identities=17%  Similarity=0.245  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      ..|+|.|++|||||||...|...
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~   30 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKK   30 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHHH
Confidence            46899999999999999998653

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.05  E-value=0.012  Score=49.58  Aligned_cols=23  Identities=13%  Similarity=0.163  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      .++|+|+.|||||||++.|.+..
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            36899999999999999998854

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.05  E-value=0.012  Score=46.71  Aligned_cols=21  Identities=24%  Similarity=0.150  Sum_probs=19.3

Q ss_pred             EEEECCCCCcHHHHHHHHHhC
Q 028686            6 RIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~   26 (205)
                      +.|+|++|+|||||+..++..
T Consensus       134 ~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          134 TEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999999875

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=94.99  E-value=0.015  Score=48.97  Aligned_cols=23  Identities=13%  Similarity=0.199  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      .++|+|+.|||||||++.|.+..
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998864

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=94.99  E-value=0.014  Score=46.32  Aligned_cols=22  Identities=23%  Similarity=0.250  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .|+|.|++|+|||+|++.+...
T Consensus        86 ~iLL~GppGtGKT~la~ala~~  107 (355)
T 2qp9_X           86 GILLYGPPGTGKSYLAKAVATE  107 (355)
T ss_dssp             CEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999999764

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=94.98  E-value=0.0088  Score=46.19  Aligned_cols=23  Identities=17%  Similarity=0.196  Sum_probs=17.2

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      .+-|+|.|++||||||+.+.|..
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45699999999999999999865

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=94.98  E-value=0.012  Score=46.65  Aligned_cols=22  Identities=14%  Similarity=0.176  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .++|.|++|+|||++++.+...
T Consensus        46 ~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           46 NALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CEEECBCTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999998764

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=94.97  E-value=0.013  Score=46.45  Aligned_cols=22  Identities=14%  Similarity=0.329  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .++|.|+||+|||++++.+...
T Consensus        72 ~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           72 AVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998754

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=94.96  E-value=0.0083  Score=50.91  Aligned_cols=22  Identities=23%  Similarity=0.173  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .++++|+.|||||||++.+.+-
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~  390 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRF  390 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            5789999999999999988764

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=94.96  E-value=0.014  Score=46.56  Aligned_cols=19  Identities=32%  Similarity=0.373  Sum_probs=17.3

Q ss_pred             EEEECCCCCcHHHHHHHHH
Q 028686            6 RIYFERGGVGKSCLLLRFS   24 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~   24 (205)
                      .+|+|+.|||||||++.++
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4689999999999999986

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=94.96  E-value=0.014  Score=49.87  Aligned_cols=23  Identities=13%  Similarity=0.199  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      .++|+|+.|+|||||++.|.+..
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998864

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=94.95  E-value=0.017  Score=43.06  Aligned_cols=23  Identities=17%  Similarity=-0.000  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      ..|++-|..||||||+++.|...
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            56899999999999999998754

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=94.95  E-value=0.014  Score=48.16  Aligned_cols=23  Identities=17%  Similarity=0.260  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      -+++++|+||+|||++++.|...
T Consensus       202 ~~~LL~G~pG~GKT~la~~la~~  224 (468)
T 3pxg_A          202 NNPVLIGEPGVGKTAIAEGLAQQ  224 (468)
T ss_dssp             CEEEEESCTTTTTHHHHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999988654

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=94.93  E-value=0.015  Score=43.27  Aligned_cols=22  Identities=27%  Similarity=0.353  Sum_probs=16.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      .-|+|.|.+||||||+++.|..
T Consensus        26 ~~I~~eG~~GsGKsT~~~~l~~   47 (227)
T 3v9p_A           26 KFITFEGIDGAGKTTHLQWFCD   47 (227)
T ss_dssp             CEEEEECCC---CHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999999864

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.93  E-value=0.015  Score=47.35  Aligned_cols=22  Identities=23%  Similarity=0.283  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      -|++.|+||+|||+|++++.+.
T Consensus       218 GvLLyGPPGTGKTlLAkAiA~e  239 (437)
T 4b4t_I          218 GVILYGAPGTGKTLLAKAVANQ  239 (437)
T ss_dssp             EEEEESSTTTTHHHHHHHHHHH
T ss_pred             CCceECCCCchHHHHHHHHHHH
Confidence            5899999999999999999874

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=94.93  E-value=0.013  Score=45.88  Aligned_cols=23  Identities=17%  Similarity=-0.047  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      -.++|.|+||+|||++++.++..
T Consensus        46 ~~lli~GpPGTGKT~~v~~v~~~   68 (318)
T 3te6_A           46 KLFYITNADDSTKFQLVNDVMDE   68 (318)
T ss_dssp             CEEEEECCCSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998764

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=94.90  E-value=0.015  Score=47.68  Aligned_cols=22  Identities=23%  Similarity=0.305  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .+++.|++|+|||+|++.+.+.
T Consensus       132 ~lll~Gp~G~GKTtLa~aia~~  153 (440)
T 2z4s_A          132 PLFIYGGVGLGKTHLLQSIGNY  153 (440)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998763

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=94.89  E-value=0.011  Score=50.37  Aligned_cols=22  Identities=27%  Similarity=0.244  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .++++|++|||||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRL  392 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5799999999999999988764

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=94.85  E-value=0.15  Score=37.03  Aligned_cols=85  Identities=13%  Similarity=0.076  Sum_probs=54.8

Q ss_pred             EEEEEEeCCCh-hhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHH
Q 028686           52 IKLQIWDTAGQ-ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS  130 (205)
Q Consensus        52 ~~~~i~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~  130 (205)
                      +.+.++|+|+. ...  .....+..+|.+|++...+ ..++..+..+++.+....  +.++.+|.|+.|-...  . ..+
T Consensus        68 yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~--~-~~~  139 (209)
T 3cwq_A           68 YQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS--K-DGD  139 (209)
T ss_dssp             CSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS--C-HHH
T ss_pred             CCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc--h-HHH
Confidence            45889999976 432  2334566799888887765 556777777777776543  4678899999985320  1 234


Q ss_pred             HHHHHHHHhCCcEE
Q 028686          131 KGQALADEYGIKFF  144 (205)
Q Consensus       131 ~~~~~~~~~~~~~~  144 (205)
                      +..+..++++.+++
T Consensus       140 ~~~~~l~~~g~~v~  153 (209)
T 3cwq_A          140 EARQLLTTAGLPLF  153 (209)
T ss_dssp             HHHHHHHHTTCCBC
T ss_pred             HHHHHHHHcCCchh
Confidence            55555555665544

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=94.84  E-value=0.016  Score=45.31  Aligned_cols=22  Identities=23%  Similarity=0.241  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .|++.|++|+|||++++.+...
T Consensus        57 ~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           57 HILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHH
Confidence            5899999999999999999764

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=94.83  E-value=0.017  Score=45.92  Aligned_cols=23  Identities=17%  Similarity=0.143  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      -.|+|.|++|+|||+|++.+...
T Consensus       118 ~~vLl~GppGtGKT~la~aia~~  140 (357)
T 3d8b_A          118 KGILLFGPPGTGKTLIGKCIASQ  140 (357)
T ss_dssp             SEEEEESSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999764

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=94.81  E-value=0.016  Score=49.46  Aligned_cols=22  Identities=18%  Similarity=0.362  Sum_probs=20.2

Q ss_pred             EEEECCCCCcHHHHHHHHHhCC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      ++|+|+.|+|||||++.|.+..
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~  402 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGAL  402 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCC
Confidence            6899999999999999998865

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=94.81  E-value=0.013  Score=45.73  Aligned_cols=22  Identities=9%  Similarity=0.022  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .+++.|+||+|||+|++.+...
T Consensus        48 ~vll~G~pGtGKT~la~~la~~   69 (331)
T 2r44_A           48 HILLEGVPGLAKTLSVNTLAKT   69 (331)
T ss_dssp             CEEEESCCCHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            5899999999999999998763

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=94.80  E-value=0.019  Score=43.41  Aligned_cols=24  Identities=21%  Similarity=0.160  Sum_probs=20.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      ..|++.|++|+|||++++.+....
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~~~   53 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHYLS   53 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred             CCEEEECCCCCcHHHHHHHHHHhc
Confidence            358999999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	205
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	3e-53
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	4e-51
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	3e-46
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	7e-46
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	8e-45
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	4e-44
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	1e-43
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	4e-43
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	4e-43
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	3e-41
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	1e-40
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	2e-40
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	4e-39
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	4e-37
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	1e-35
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	1e-35
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	5e-35
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	5e-35
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	7e-34
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	6e-33
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	2e-32
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	2e-32
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	7e-32
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	2e-31
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	3e-31
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	3e-31
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	2e-30
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	2e-30
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	4e-30
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	7e-30
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	2e-29
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	4e-29
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	7e-29
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	9e-29
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	5e-28
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-27
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-27
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	2e-27
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	3e-27
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	5e-24
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	2e-23
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	6e-23
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-22
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	2e-22
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	3e-22
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	9e-22
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	3e-21
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	4e-21
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	2e-20
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-20
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	9e-19
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	1e-17
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	1e-15
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	7e-15
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	1e-14
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	2e-12
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	3e-08
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	4e-05
d2qn6a3	205	c.37.1.8 (A:2-206) Initiation factor eIF2 gamma su	8e-04
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	0.001
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	0.002

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  166 bits (421), Expect = 3e-53
 Identities = 111/158 (70%), Positives = 138/158 (87%), Gaps = 1/158 (0%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
            GVGK+C+L RFS+ +F ++FI+TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA
Sbjct: 15  SGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 74

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YYRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK D+++ KR V   +
Sbjct: 75  YYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKER 133

Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
           G+ LA +YGIKF ETSAK N+NVE  FF++ARDIK ++
Sbjct: 134 GEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 171

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  160 bits (406), Expect = 4e-51
 Identities = 94/158 (59%), Positives = 127/158 (80%), Gaps = 2/158 (1%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
            GVGKSCLL+RF +  F  SFITTIGIDFKI+T++++GK++KLQIWDTAGQERFRTITTA
Sbjct: 11  SGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTA 70

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YYRGAMGI+LVYD+TDE +F NI+ W + + +HA+D    +LVGNK+DM+   R V   +
Sbjct: 71  YYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQ 128

Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
           G+ALA E GI F E+SAK + NV ++FF++A+ I++++
Sbjct: 129 GEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 166

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  148 bits (374), Expect = 3e-46
 Identities = 80/157 (50%), Positives = 118/157 (75%), Gaps = 2/157 (1%)

Query: 12  GGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITT 70
            GVGK+CLL+RF DG+F   +FI+T+GIDF+ + +++DG ++KLQ+WDTAGQERFR++T 
Sbjct: 15  SGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTH 74

Query: 71  AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS 130
           AYYR A  +LL+YDVT+++SF+NI+ W+  I ++A  +V  +L+GNK      +R V   
Sbjct: 75  AYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNK-VDSAHERVVKRE 133

Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
            G+ LA EYG+ F ETSAKT LNV+  F +IA+++K+
Sbjct: 134 DGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 170

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  147 bits (372), Expect = 7e-46
 Identities = 73/154 (47%), Positives = 105/154 (68%), Gaps = 1/154 (0%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
            GVGK+CL+ RF+ G F      TIG+DF I+T+E++G+++KLQIWDTAGQERFR+IT +
Sbjct: 14  AGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQS 73

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YYR A  ++L YD+T E SF  +  W+R IEQ+AS+ V  VLVGNK D    +R V   +
Sbjct: 74  YYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKID-LAERREVSQQR 132

Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
            +  ++   + + ETSAK + NVE++F  +A  +
Sbjct: 133 AEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 166

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  145 bits (367), Expect = 8e-45
 Identities = 88/158 (55%), Positives = 119/158 (75%), Gaps = 1/158 (0%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
            GVGKSCLLLRFSD ++T  +I+TIG+DFKI+T+ELDGK +KLQIWDTAGQERFRTIT++
Sbjct: 15  SGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSS 74

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YYRG+ GI++VYDVTD+ SFN ++ W++ I+++A+  V K+LVGNK    + KR V    
Sbjct: 75  YYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNK-CDLKDKRVVEYDV 133

Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
            +  AD   + F ETSA  + NVE  F ++AR IK+ +
Sbjct: 134 AKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESM 171

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  143 bits (360), Expect = 4e-44
 Identities = 73/154 (47%), Positives = 103/154 (66%), Gaps = 1/154 (0%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
            GVGKSCLL +F++  F      TIG++F  R IE+ G++IKLQIWDTAGQERFR +T +
Sbjct: 13  MGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRS 72

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YYRGA G L+VYD+T  S++N++ +W+ +     + N   +L+GNKAD+ E++R V   +
Sbjct: 73  YYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADL-EAQRDVTYEE 131

Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
            +  A+E G+ F E SAKT  NVE  F   A+ I
Sbjct: 132 AKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  141 bits (357), Expect = 1e-43
 Identities = 75/158 (47%), Positives = 107/158 (67%), Gaps = 1/158 (0%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
            GVGKS LL RF+   F     +TIG++F  R+I++DGK IK QIWDTAGQER+R IT+A
Sbjct: 13  SGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSA 72

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+    RAVPT +
Sbjct: 73  YYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH-LRAVPTDE 131

Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
            +A A++  + F ETSA  + NVE+ F +I  +I + +
Sbjct: 132 ARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIV 169

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  140 bits (353), Expect = 4e-43
 Identities = 85/157 (54%), Positives = 117/157 (74%), Gaps = 1/157 (0%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
             VGK+  L R++D SFT +F++T+GIDFK++TI  + KRIKLQIWDTAGQER+RTITTA
Sbjct: 14  SSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTA 73

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   +LVGNK DM E +R V + +
Sbjct: 74  YYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM-EDERVVSSER 132

Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
           G+ LAD  G +FFE SAK N+NV+Q F  +   I ++
Sbjct: 133 GRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 169

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  140 bits (354), Expect = 4e-43
 Identities = 69/157 (43%), Positives = 97/157 (61%), Gaps = 1/157 (0%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
            GVGKS LLLRF+D +F      TIG+DFK++TI +DG + KL IWDTAGQERFRT+T +
Sbjct: 16  SGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPS 75

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YYRGA G++LVYDVT   +F  + NW+  +E + + N    ++     +D+  R V  ++
Sbjct: 76  YYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGN-KIDKENREVDRNE 134

Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
           G   A ++ + F E SAKT   V+  F  +   I Q 
Sbjct: 135 GLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT 171

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (341), Expect = 3e-41
 Identities = 70/158 (44%), Positives = 95/158 (60%), Gaps = 1/158 (0%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
            G GKSCLL +F +  F      TIG++F  + I + GK +KLQIWDTAGQERFR++T +
Sbjct: 14  AGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRS 73

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YYRGA G LLVYD+T   ++N + NW+ +    AS N+  +L GNK    ++ R V   +
Sbjct: 74  YYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK-KDLDADREVTFLE 132

Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
               A E  + F ETSA T  NVE+ F   AR I  ++
Sbjct: 133 ASRFAQENELMFLETSALTGENVEEAFVQCARKILNKI 170

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  134 bits (337), Expect = 1e-40
 Identities = 82/158 (51%), Positives = 116/158 (73%), Gaps = 1/158 (0%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
            GVGKSCLLL+F+D  F      TIG++F  R + +DGK+IKLQIWDTAGQE FR+IT +
Sbjct: 12  TGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRS 71

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YYRGA G LLVYD+T   +FN++ +W+ +  QH+S N+  +L+GNK+D+ ES+R V   +
Sbjct: 72  YYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDL-ESRRDVKREE 130

Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
           G+A A E+G+ F ETSAKT  NVE+ F + A++I +++
Sbjct: 131 GEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKI 168

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  134 bits (337), Expect = 2e-40
 Identities = 72/169 (42%), Positives = 110/169 (65%), Gaps = 12/169 (7%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL----------DGKRIKLQIWDTAG 61
            GVGK+  L R++D  F   FITT+GIDF+ + +               ++ LQ+WDTAG
Sbjct: 14  SGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAG 73

Query: 62  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADM 120
           QERFR++TTA++R AMG LL++D+T + SF N+RNW+  ++ +   +N + VL+GNKAD+
Sbjct: 74  QERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADL 133

Query: 121 DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
            + +R V   + + LAD+YGI +FETSA T  NVE+   ++   I +R+
Sbjct: 134 PD-QREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRM 181

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (326), Expect = 4e-39
 Identities = 63/154 (40%), Positives = 94/154 (61%), Gaps = 1/154 (0%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
             VGK+ L+ RF   SF  ++  TIGIDF  +T+ L+ + I+LQ+WDTAGQERFR++  +
Sbjct: 9   QSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPS 68

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           Y R +   ++VYD+T+ +SF     WI ++      +V  +LVGNK D+   KR V   +
Sbjct: 69  YIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL-ADKRQVSIEE 127

Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
           G+  A E  + F ETSAK   NV+Q+F  +A  +
Sbjct: 128 GERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (313), Expect = 4e-37
 Identities = 59/156 (37%), Positives = 94/156 (60%), Gaps = 1/156 (0%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+ L+LR+ +  F    ITT+G  F  + + + GKR+ L IWDTAGQERF  +   
Sbjct: 12  GCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPI 71

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YYR + G +LVYD+TDE SF  ++NW++ + +   + +   +VGNK    E +R V   +
Sbjct: 72  YYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNK-IDLEKERHVSIQE 130

Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
            ++ A+  G K + TSAK N  +E++F  + + + +
Sbjct: 131 AESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 166

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (304), Expect = 1e-35
 Identities = 59/157 (37%), Positives = 91/157 (57%), Gaps = 3/157 (1%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L ++F  G+F   +  TI  DF  + IE+D     L+I DTAG E+F ++   
Sbjct: 12  GGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDL 70

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIE-QHASDNVNKVLVGNKADMDESKRAVPTS 130
           Y +   G +LVY + ++ SF +I+     I      + V  +LVGNK D++  +  V +S
Sbjct: 71  YIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESERE-VSSS 129

Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
           +G+ALA+E+G  F ETSAK+   V+++F  I R +  
Sbjct: 130 EGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNY 166

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (303), Expect = 1e-35
 Identities = 67/156 (42%), Positives = 100/156 (64%), Gaps = 1/156 (0%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
             VGKS L+LRF  G F     +TIG  F  +T+ LD   +K +IWDTAGQER+ ++   
Sbjct: 15  SAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPM 74

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YYRGA   ++VYD+T+E SF   +NW++ +++ AS N+   L GNK     +KRAV   +
Sbjct: 75  YYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK-ADLANKRAVDFQE 133

Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
            Q+ AD+  + F ETSAKT++NV ++F +IA+ + +
Sbjct: 134 AQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (300), Expect = 5e-35
 Identities = 62/159 (38%), Positives = 87/159 (54%), Gaps = 3/159 (1%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L+ R+    F T    TIG++F  + +E+DG  + +QIWDTAGQERFR++ T 
Sbjct: 15  GGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTP 74

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPT 129
           +YRG+   LL + V D  SF N+ NW +    +A   +  +   V     +D S+R V T
Sbjct: 75  FYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVST 134

Query: 130 SKGQALADEYG-IKFFETSAKTNLNVEQVFFSIARDIKQ 167
            + QA   + G   +FETSAK   NV   F    R +  
Sbjct: 135 EEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 173

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  119 bits (299), Expect = 5e-35
 Identities = 66/159 (41%), Positives = 92/159 (57%), Gaps = 2/159 (1%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
             VGKS ++LRF    F  +   TIG  F  + + ++   +K +IWDTAGQERF ++   
Sbjct: 12  AAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPM 71

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD--MDESKRAVPT 129
           YYR A   L+VYDVT   SF   R+W++ + + AS ++   LVGNK D   +  +R V  
Sbjct: 72  YYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAR 131

Query: 130 SKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
            +G+ LA+E G+ FFETSAKT  NV  VF  I   I  +
Sbjct: 132 EEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (291), Expect = 7e-34
 Identities = 57/157 (36%), Positives = 83/157 (52%), Gaps = 4/157 (2%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L ++     F   +  TI  D   + + +DG+   L I DTAGQE +  +   
Sbjct: 12  GGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQ 70

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTS 130
           Y R   G L V+ + +  SF +I  +   I++    D+V  VLVGNK D+        + 
Sbjct: 71  YMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTV--ESR 128

Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
           + Q LA  YGI + ETSAKT   VE  F+++ R+I+Q
Sbjct: 129 QAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  114 bits (285), Expect = 6e-33
 Identities = 57/158 (36%), Positives = 91/158 (57%), Gaps = 3/158 (1%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L L+F    F   +  T   D   + + LDG+ +++ I DTAGQE +  I   
Sbjct: 13  GGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDN 71

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKVLVGNKADMDESKRAVPTS 130
           Y+R   G L V+ +T+  SF    ++   I      +NV  +LVGNK+D+++ ++ V   
Sbjct: 72  YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ-VSVE 130

Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
           + +  AD++ + + ETSAKT  NV++VFF + R+I+ R
Sbjct: 131 EAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (283), Expect = 2e-32
 Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 13/168 (7%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+ ++  +F   +I T+  D     + +DGK + L +WDTAGQE +  +   
Sbjct: 14  GAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPL 72

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAV---- 127
            Y      L+ + +   +SF N+R       +H   N   +LVG K D+ + K  +    
Sbjct: 73  SYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLK 132

Query: 128 -------PTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIARDIKQ 167
                     +G A+A E G +K+ E SA T   ++ VF    R +  
Sbjct: 133 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 180

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (283), Expect = 2e-32
 Identities = 42/177 (23%), Positives = 73/177 (41%), Gaps = 13/177 (7%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+ ++   F + ++ T+  D    T+ + G+   L ++DTAGQE +  +   
Sbjct: 12  GAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPL 70

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAV---- 127
            Y      L+ + V   SSF N++        H       +LVG + D+ +    +    
Sbjct: 71  SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLA 130

Query: 128 -------PTSKGQALADEY-GIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRS 176
                       + LA +   +K+ E SA T   ++ VF        +      SR 
Sbjct: 131 KNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRR 187

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (279), Expect = 7e-32
 Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 13/166 (7%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGK+CLL+ +++ +F   ++ T+  D    ++ + GK+  L ++DTAGQE +  +   
Sbjct: 18  GAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPL 76

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR------ 125
            Y      L+ + V + +SF N++       +  + NV  +L+G + D+ +  +      
Sbjct: 77  SYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLN 136

Query: 126 -----AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIARDI 165
                 +   +GQ LA E G   + E SA T   ++ VF      I
Sbjct: 137 DMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 182

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (275), Expect = 2e-31
 Identities = 58/158 (36%), Positives = 82/158 (51%), Gaps = 3/158 (1%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L ++F    F + +      D   +   +DG   +L I DTAGQE F  +   
Sbjct: 15  GGVGKSALTIQFIQSYFVSDYDP-TIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQ 73

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKVLVGNKADMDESKRAVPTS 130
           Y R   G LLV+ + D  SFN +      I      D+   VLVGNKAD+ ES+R VP S
Sbjct: 74  YMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL-ESQRQVPRS 132

Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
           +  A    + + +FE SAK  LNV++ F  + R +++ 
Sbjct: 133 EASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKY 170

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (274), Expect = 3e-31
 Identities = 50/156 (32%), Positives = 84/156 (53%), Gaps = 2/156 (1%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L ++F  G F   +  TI  D   + +E+D ++  L+I DTAG E+F  +   
Sbjct: 12  GGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDL 70

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKVLVGNKADMDESKRAVPTS 130
           Y +   G  LVY +T +S+FN++++    I     +++V  +LVGNK D+++ +      
Sbjct: 71  YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQ 130

Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIK 166
                       F E+SAK+ +NV ++F+ + R I 
Sbjct: 131 GQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  110 bits (274), Expect = 3e-31
 Identities = 57/155 (36%), Positives = 89/155 (57%), Gaps = 1/155 (0%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
            GVGKS ++ RF + SF  +   TIG  F  +T++   +  K  IWDTAG ERFR +   
Sbjct: 13  TGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPM 72

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YYRG+   ++VYD+T E +F+ ++NW+R + QH   ++   + GNK D+ + +  +    
Sbjct: 73  YYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVME-RD 131

Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIK 166
            +  AD     F ETSAK  +N+ ++F  I+R I 
Sbjct: 132 AKDYADSIHAIFVETSAKNAININELFIEISRRIP 166

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  107 bits (268), Expect = 2e-30
 Identities = 66/156 (42%), Positives = 100/156 (64%), Gaps = 6/156 (3%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-RTITT 70
             VGK+CL  RF  G F      TIG+DF+ R +++DG+RIK+Q+WDTAGQERF +++  
Sbjct: 11  SNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQ 70

Query: 71  AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPT 129
            YYR    ++ VYD+T+ +SF+++  WI   +QH  ++++ ++LVGNK D+      VPT
Sbjct: 71  HYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS-AIQVPT 129

Query: 130 SKGQALADEYGIKFFETSAKT---NLNVEQVFFSIA 162
              Q  AD + +  FETSAK    N +VE +F ++A
Sbjct: 130 DLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 165

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (269), Expect = 2e-30
 Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 13/168 (7%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G  GK+CLL+  S   F   ++ T+  +  +  IE+DGK+++L +WDTAG E +  +   
Sbjct: 11  GACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPL 69

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA----- 126
            Y     IL+ + +    S  NI        +H   NV  +LVGNK D+   +       
Sbjct: 70  SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELA 129

Query: 127 ------VPTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIARDIKQ 167
                 V   +G+ +A+  G   + E SAKT   V +VF    R   Q
Sbjct: 130 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 177

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  107 bits (267), Expect = 4e-30
 Identities = 69/163 (42%), Positives = 100/163 (61%), Gaps = 6/163 (3%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRI-KLQIWDTAGQERFRTITT 70
            GVGK+ L+ R+ +  ++  +  TIG DF  + + +DG ++  +Q+WDTAGQERF+++  
Sbjct: 11  SGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGV 70

Query: 71  AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK----VLVGNKADMDESKRA 126
           A+YRGA   +LVYDVT+ SSF NI++W      HA+ N  +    V++GNK D +ESK+ 
Sbjct: 71  AFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKI 130

Query: 127 VPTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIARDIKQR 168
           V     Q LA   G I  F TSAK  +NV+  F  IAR   Q+
Sbjct: 131 VSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 173

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (265), Expect = 7e-30
 Identities = 60/158 (37%), Positives = 84/158 (53%), Gaps = 3/158 (1%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L ++F    F T +  TI  D   +   +D +  +L I DTAGQE F  +   
Sbjct: 14  GGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQ 72

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIR-NIEQHASDNVNKVLVGNKADMDESKRAVPTS 130
           Y R   G LLV+ VTD  SF  I  + R  +     D    +L+GNKAD+D  +R V   
Sbjct: 73  YMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH-QRQVTQE 131

Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
           +GQ LA +  + + E SAK  +NV+Q F  + R I++ 
Sbjct: 132 EGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKF 169

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  105 bits (262), Expect = 2e-29
 Identities = 61/175 (34%), Positives = 100/175 (57%), Gaps = 6/175 (3%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
            GVGK+ L+ ++ +  F+  +  TIG DF  + + +D + + +QIWDTAGQERF+++  A
Sbjct: 11  SGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVA 70

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAV 127
           +YRGA   +LV+DVT  ++F  + +W       AS    +N   V++GNK D++  +   
Sbjct: 71  FYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQV-A 129

Query: 128 PTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSE-PSTI 181
                     +  I +FETSAK  +NVEQ F +IAR+  ++  + +  +E P  I
Sbjct: 130 TKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPI 184

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  104 bits (259), Expect = 4e-29
 Identities = 52/158 (32%), Positives = 82/158 (51%), Gaps = 2/158 (1%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L ++F    F   +  TI  D  ++  E+D +   L + DTAGQE F  +   
Sbjct: 13  GGVGKSALTIQFFQKIFVPDYDPTI-EDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQ 71

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           Y R   G L+VY VTD++SF ++  + + I +        +++          R V   +
Sbjct: 72  YMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQ 131

Query: 132 GQALADEYGIKFFETSAKT-NLNVEQVFFSIARDIKQR 168
           G+ +A +Y I + ETSAK   LNV++ F  + R I+Q+
Sbjct: 132 GKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 169

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  104 bits (259), Expect = 7e-29
 Identities = 36/170 (21%), Positives = 73/170 (42%), Gaps = 14/170 (8%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
              GK+ LL  F+   F  +++ T+  +    + E+D +RI+L +WDT+G   +  +   
Sbjct: 11  SQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPYYDNVRPL 69

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES-------- 123
            Y  +  +L+ +D++   + +++    +   Q    N   +LVG K+D+           
Sbjct: 70  SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELS 129

Query: 124 ---KRAVPTSKGQALADEYGI-KFFETSAKTNLN-VEQVFFSIARDIKQR 168
              +  V   +G  +A + G   + E SA  + N V  +F         +
Sbjct: 130 NHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 179

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  103 bits (257), Expect = 9e-29
 Identities = 59/156 (37%), Positives = 88/156 (56%), Gaps = 2/156 (1%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G VGKS ++ R+  G FT  +  TIG+DF  R I+++ + ++L +WDTAGQE F  IT A
Sbjct: 11  GAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKA 70

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YYRGA   +LV+  TD  SF  I +W   +      ++   LV NK D+ +    +   +
Sbjct: 71  YYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSC-IKNEE 128

Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
            + LA    ++F+ TS K +LNV +VF  +A    Q
Sbjct: 129 AEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 164

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (253), Expect = 5e-28
 Identities = 53/159 (33%), Positives = 78/159 (49%), Gaps = 4/159 (2%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GGVGKS L+LRF  G+F  S+I T+   ++      D     LQI DT G  +F  +   
Sbjct: 11  GGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISC-DKSICTLQITDTTGSHQFPAMQRL 69

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK--VLVGNKADMDESKRAVPT 129
                   +LVY +T   S   ++     I +   D  +   +LVGNK   +   R V +
Sbjct: 70  SISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNK-CDESPSREVQS 128

Query: 130 SKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
           S+ +ALA  +   F ETSAK N NV+++F  +    K+R
Sbjct: 129 SEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRR 167

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score =  100 bits (250), Expect = 1e-27
 Identities = 31/158 (19%), Positives = 58/158 (36%), Gaps = 8/158 (5%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
              GK+ +L +   G   T+ I T+G + +  T     K +K  +WD  GQ++ R +   
Sbjct: 21  DAAGKTTILYKLKLGQSVTT-IPTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRH 75

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKAD--MDESKRAVP 128
           YY G  G++ V D  D    +  R  +  I       +   ++  NK D         + 
Sbjct: 76  YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQ 135

Query: 129 TSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIK 166
              G     +       + A +   + +    +  + K
Sbjct: 136 EKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 173

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score =  100 bits (249), Expect = 1e-27
 Identities = 24/157 (15%), Positives = 48/157 (30%), Gaps = 8/157 (5%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
              GK+ +L +   G   T                ++ K I   +WD  GQ++ R +   
Sbjct: 9   DAAGKTTILYKLKLGEIVT-----TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 63

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE---SKRAVP 128
           Y++   G++ V D  D    N  R  +  +          +LV           +   + 
Sbjct: 64  YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEIT 123

Query: 129 TSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
              G             T A +   + +    ++  +
Sbjct: 124 DKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (248), Expect = 2e-27
 Identities = 51/159 (32%), Positives = 81/159 (50%), Gaps = 5/159 (3%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
            GVGKS L++RF    F   +  T+   ++ +    D + + ++I DT   +        
Sbjct: 11  AGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATI-DDEVVSMEILDT-AGQEDTIQREG 68

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIR-NIEQHASDNVNKVLVGNKADMDESKRAVPTS 130
           + R   G +LVYD+TD  SF  +        E     NV  +LVGNKAD+D   R V T 
Sbjct: 69  HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH-SRQVSTE 127

Query: 131 KGQALADEYGIKFFETSAKTN-LNVEQVFFSIARDIKQR 168
           +G+ LA E    F+E SA T   N+ ++F+ + R++++R
Sbjct: 128 EGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR 166

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score =  100 bits (248), Expect = 3e-27
 Identities = 35/160 (21%), Positives = 57/160 (35%), Gaps = 8/160 (5%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
            G GK+ +L R   G   T+  T IG + +     L  K +KL +WD  GQ   R     
Sbjct: 26  DGAGKTTILYRLQIGEVVTTKPT-IGFNVET----LSYKNLKLNVWDLGGQTSIRPYWRC 80

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDE--SKRAVP 128
           YY     ++ V D TD+   +     +  + Q     +   ++  NK D     S   V 
Sbjct: 81  YYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVS 140

Query: 129 TSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
                    +       +SA     + +    +   IK+ 
Sbjct: 141 KELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 180

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 91.6 bits (226), Expect = 5e-24
 Identities = 28/158 (17%), Positives = 52/158 (32%), Gaps = 8/158 (5%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
              GK+ +L +FS      +  T      +I          +  +WD  GQE  R+    
Sbjct: 24  DNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVIN-----NTRFLMWDIGGQESLRSSWNT 78

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADM--DESKRAVP 128
           YY     +++V D TD    +  R  +  +  H        ++  NK D+    +   + 
Sbjct: 79  YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEIS 138

Query: 129 TSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIK 166
                    ++        A T   + Q    +   +K
Sbjct: 139 QFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 176

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.8 bits (221), Expect = 2e-23
 Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 3/156 (1%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
             VGKS L ++F +G F  S+  TI  +   + I ++G+   LQ+ DTAGQ+ +      
Sbjct: 13  RSVGKSSLTIQFVEGQFVDSYDPTI-ENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQT 71

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDNVNKVLVGNKADMDESKRAVPTS 130
           Y     G +LVY VT   SF  I+    + ++      +  +LVGNK D+   +  +   
Sbjct: 72  YSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERV-ISYE 130

Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIK 166
           +G+ALA+ +   F E+SAK N     VF  I  + +
Sbjct: 131 EGKALAESWNAAFLESSAKENQTAVDVFRRIILEAE 166

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.6 bits (218), Expect = 6e-23
 Identities = 47/156 (30%), Positives = 82/156 (52%), Gaps = 4/156 (2%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           GG GK+  + R   G F   ++ T+G++        +   IK  +WDTAGQE+F  +   
Sbjct: 12  GGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDG 71

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
           YY  A   ++++DVT   ++ N+ NW R++ +   +N+  VL GNK D+   K     +K
Sbjct: 72  YYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDI---KDRKVKAK 127

Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
                 +  +++++ SAK+N N E+ F  +AR +  
Sbjct: 128 SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 163

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 87.3 bits (215), Expect = 2e-22
 Identities = 27/157 (17%), Positives = 53/157 (33%), Gaps = 8/157 (5%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
              GK+ LL + +    +     T G + K        +  KL +WD  GQ + R    +
Sbjct: 25  DNAGKTTLLKQLASEDISH-ITPTQGFNIKSVQS----QGFKLNVWDIGGQRKIRPYWRS 79

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADM--DESKRAVP 128
           Y+     ++ V D  D   F      +  + +      V  ++  NK D+        + 
Sbjct: 80  YFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIA 139

Query: 129 TSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
                    +   +    SA T   V+     + +++
Sbjct: 140 EGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.1 bits (214), Expect = 2e-22
 Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 4/158 (2%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
            GVGKS L   F                   R+I +DG+   L ++D   Q+  R +   
Sbjct: 10  PGVGKSALARIFGGVEDGPE--AEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGH 67

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNW-IRNIEQHASDNVNKVLVGNKADMDESKRAVPTS 130
                   ++VY VTD+ SF       ++      +D+V  +LVGNK+D+    R V   
Sbjct: 68  CMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR-SREVSVD 126

Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
           +G+A A  +  KF ETSA  + NV+ +F  + R I+ R
Sbjct: 127 EGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 164

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.6 bits (213), Expect = 3e-22
 Identities = 32/159 (20%), Positives = 64/159 (40%), Gaps = 6/159 (3%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
              GKS L+ RF  GS+          +   + + +DG+   + I + AG    +     
Sbjct: 14  ARSGKSSLIHRFLTGSYQVL--EKTESEQYKKEMLVDGQTHLVLIREEAGAPDAKFSGW- 70

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM-DESKRAVPTS 130
                + +  + D     + + +   + ++       +   LVG +  +   S R V  +
Sbjct: 71  -ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDA 129

Query: 131 KGQALA-DEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
           + +AL  D     ++ET A   LNV++VF  +A+ +   
Sbjct: 130 RARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTL 168

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 85.5 bits (210), Expect = 9e-22
 Identities = 31/161 (19%), Positives = 58/161 (36%), Gaps = 8/161 (4%)

Query: 11  RGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITT 70
               GK+ +L +F+     T     I          L+ +  KL IWD  GQ+  R+   
Sbjct: 10  LDNAGKTTILKKFNGEDVDT-----ISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWR 64

Query: 71  AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDE--SKRAV 127
            Y+    G++ V D  D     + +  ++++           ++  NK D+    S  A+
Sbjct: 65  NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAI 124

Query: 128 PTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
             +        +  +    SA T  ++      +  DI  R
Sbjct: 125 QEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 165

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.0 bits (206), Expect = 3e-21
 Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 4/160 (2%)

Query: 12  GGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTA-GQERFRTIT 69
            GVGKS L   F+    +  S    +G D   RT+ +DG+   + + D    +     + 
Sbjct: 12  QGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLH 71

Query: 70  TAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDESKRAVP 128
               +     L+VY +TD +SF       I+      ++++  +LVGNK+D+   +  V 
Sbjct: 72  DHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCRE-VS 130

Query: 129 TSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
            S+G+A A  +  KF ETSA    NV+++F  I R ++ R
Sbjct: 131 VSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 170

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 83.6 bits (205), Expect = 4e-21
 Identities = 26/163 (15%), Positives = 57/163 (34%), Gaps = 15/163 (9%)

Query: 11  RGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITT 70
               GK+ LL    +    T     +   +   + EL    IK   +D  G  + R +  
Sbjct: 8   LDNAGKTTLLHMLKNDRLAT-----LQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWK 62

Query: 71  AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVG----------NKADM 120
            Y+    GI+ + D  D   F+  R  +  +   A       ++           ++A++
Sbjct: 63  DYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAEL 122

Query: 121 DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR 163
             +   + T+  Q +  +  ++ F  S        + F  +++
Sbjct: 123 RSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 82.0 bits (201), Expect = 2e-20
 Identities = 30/158 (18%), Positives = 63/158 (39%), Gaps = 7/158 (4%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
              GK+  +   + G F    I T          ++    + +++WD  GQ RFR++   
Sbjct: 11  QYSGKTTFVNVIASGQFNEDMIPT----VGFNMRKITKGNVTIKLWDIGGQPRFRSMWER 66

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDES--KRAVP 128
           Y RG   I+ + D  D+      +N + N+        +  +++GNK D+  +  ++ + 
Sbjct: 67  YCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELI 126

Query: 129 TSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIK 166
                +   +  I  +  S K   N++     + +  K
Sbjct: 127 EKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 164

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 81.7 bits (200), Expect = 2e-20
 Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 8/161 (4%)

Query: 11  RGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITT 70
             G GK+ +L R   G   T                +  K +K Q+WD  G    R    
Sbjct: 13  LDGAGKTTILYRLQVGEVVT-----TIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWR 67

Query: 71  AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDE--SKRAV 127
            YY     ++ V D  D       ++ +  + +         V+  NK DM++  +   +
Sbjct: 68  CYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEM 127

Query: 128 PTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
             S G     +   + F+TSA     +++    +   +K R
Sbjct: 128 ANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 168

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.4 bits (192), Expect = 9e-19
 Identities = 27/194 (13%), Positives = 53/194 (27%), Gaps = 44/194 (22%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G  GKS  + +      +   + T GI         D + +  ++ D  GQ   R     
Sbjct: 11  GESGKSTFIKQMRIIHGSG--VPTTGIIEY----PFDLQSVIFRMVDVGGQRSERRKWIH 64

Query: 72  YYRGAMGILLVYDVTD-----------ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM 120
            +     I+ +  +++                +   +   I      N + +L  NK   
Sbjct: 65  CFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNK-KD 123

Query: 121 DESKRAVPTSKGQALADEYG--------------------------IKFFETSAKTNLNV 154
              ++ + +       +  G                          I    T A    N+
Sbjct: 124 LLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENI 183

Query: 155 EQVFFSIARDIKQR 168
             VF ++   I Q 
Sbjct: 184 RFVFAAVKDTILQL 197

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.9 bits (186), Expect = 1e-17
 Identities = 25/183 (13%), Positives = 50/183 (27%), Gaps = 19/183 (10%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G  GKS ++ +          + T GI       +    ++   ++D  GQ   R     
Sbjct: 15  GESGKSTIVKQMRILHV----VLTSGIFET----KFQVDKVNFHMFDVGGQRDERRKWIQ 66

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQH-----------ASDNVNKVLVGNKADM 120
            +     I+ V   +  +      N    +++                ++ +L  NK D+
Sbjct: 67  CFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 126

Query: 121 DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPST 180
              K     SK +    E+        A      +         I+       + S    
Sbjct: 127 LAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGR 186

Query: 181 IKI 183
              
Sbjct: 187 HYC 189

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 70.0 bits (170), Expect = 1e-15
 Identities = 26/194 (13%), Positives = 49/194 (25%), Gaps = 47/194 (24%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G  GKS ++ +        + I      FK             +++D  GQ   R     
Sbjct: 11  GESGKSTIVKQMKIIHEAGTGIVETHFTFKDLHF---------KMFDVGGQRSERKKWIH 61

Query: 72  YYRGAMGILLVYDVTDESSFNNIRN-----------WIRNIEQHASDNVNKVLVGNKADM 120
            + G   I+    ++D                    +          + + +L  NK   
Sbjct: 62  CFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNK-KD 120

Query: 121 DESKRAVPTSKGQALADEYG--------------------------IKFFETSAKTNLNV 154
              ++   +       +  G                          I    T A    NV
Sbjct: 121 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNV 180

Query: 155 EQVFFSIARDIKQR 168
           + VF ++   I + 
Sbjct: 181 QFVFDAVTDVIIKN 194

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.0 bits (165), Expect = 7e-15
 Identities = 30/195 (15%), Positives = 51/195 (26%), Gaps = 46/195 (23%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
           G  GKS  L +            T GI       + + K +  ++ D  GQ   R     
Sbjct: 11  GESGKSTFLKQMR---IIHGQDPTKGIHEY----DFEIKNVPFKMVDVGGQRSERKRWFE 63

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWIRN-----------IEQHASDNVNKVLVGNKADM 120
            +     IL +   ++                        +      NV+ +L  NK D+
Sbjct: 64  CFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 123

Query: 121 DESKRAVPTSKGQALADEYG---------------------------IKFFETSAKTNLN 153
            E ++    S      +  G                           +    T+A    N
Sbjct: 124 LE-EKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTEN 182

Query: 154 VEQVFFSIARDIKQR 168
           +  VF  +   I   
Sbjct: 183 IRLVFRDVKDTILHD 197

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 67.0 bits (162), Expect = 1e-14
 Identities = 28/169 (16%), Positives = 47/169 (27%), Gaps = 20/169 (11%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
              GK+ LL    D            +      + + G              + R +   
Sbjct: 22  DNAGKTTLLHMLKDDRL---GQHVPTLHPTSEELTIAGMTFTTFDLGG--HIQARRVWKN 76

Query: 72  YYRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDNVNKVLVGNKADMDE-------- 122
           Y     GI+ + D  D       +  +   +      NV  +++GNK D  E        
Sbjct: 77  YLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLR 136

Query: 123 ---SKRAVPTSKGQALADEYG---IKFFETSAKTNLNVEQVFFSIARDI 165
                    T KG     E     ++ F  S        + F  +A+ I
Sbjct: 137 EMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.2 bits (147), Expect = 2e-12
 Identities = 17/117 (14%), Positives = 40/117 (34%), Gaps = 5/117 (4%)

Query: 12  GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
              GK+ L +R   G +  +  T+I     I  +  +       I     +     +   
Sbjct: 9   CDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDR 67

Query: 72  YYRGAMGILLVYDVTD-ESSFNNIRNWIRNIEQHASDNVNK---VLVGNKADMDESK 124
           +   A  ++ V D    +    ++  ++  +   +    N    ++  NK D+  +K
Sbjct: 68  FKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 124

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.6 bits (117), Expect = 3e-08
 Identities = 28/198 (14%), Positives = 54/198 (27%), Gaps = 28/198 (14%)

Query: 11  RGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITT 70
               GK+ LL   +  S       T+     +   + DG  +   + D  G  + R   +
Sbjct: 11  PQNSGKTSLLTLLTTDSVR----PTVVSQEPLSAADYDGSGV--TLVDFPGHVKLRYKLS 64

Query: 71  AYY-----RGAMGILLVYDVTDESSFNNIRNWIRNI----EQHASDNVNKVLVGNKADMD 121
            Y           I +V    D         ++ +I    E    + ++ ++  NK   +
Sbjct: 65  DYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNK--SE 122

Query: 122 ESKRAVPTSKGQALADE---------YGIKFFETSAKTNLNVEQVFFSI--ARDIKQRLA 170
                 P+    AL  E           +   E         E     +      K    
Sbjct: 123 LFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTDGFKFANL 182

Query: 171 DTDSRSEPSTIKINQPDQ 188
           +    +   +I   +  Q
Sbjct: 183 EASVVAFEGSINKRKISQ 200

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 40.1 bits (92), Expect = 4e-05
 Identities = 30/166 (18%), Positives = 54/166 (32%), Gaps = 20/166 (12%)

Query: 11  RGGVGKSCLLLRFS-DGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT------AGQE 63
           R   GKS LL   +   +   + I     D     I +DG  + +             + 
Sbjct: 9   RPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVER 68

Query: 64  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 123
                       A  +L + D T   + +    W   I +     +   +V NKAD+   
Sbjct: 69  IGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARL-PAKLPITVVRNKADI--- 124

Query: 124 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
                T +   +++  G      SA+T   V+ +       +KQ +
Sbjct: 125 -----TGETLGMSEVNGHALIRLSARTGEGVDVLR----NHLKQSM 161

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 205

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 36.9 bits (84), Expect = 8e-04
 Identities = 21/138 (15%), Positives = 39/138 (28%), Gaps = 6/138 (4%)

Query: 33  ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN 92
             T        + +      ++   D  G E       +      G +LV    +     
Sbjct: 67  YVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQP 126

Query: 93  NIRNWIRNIEQHASDNVNKVLVGNKADM--DESKRAVPTSKGQALADEYG--IKFFETSA 148
             R     +      N+   +V NK D+   E   +      Q     +   +     SA
Sbjct: 127 QTREHFVALGIIGVKNLI--IVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSA 184

Query: 149 KTNLNVEQVFFSIARDIK 166
              +N++ +   I   IK
Sbjct: 185 LHKINIDSLIEGIEEYIK 202

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.3 bits (82), Expect = 0.001
 Identities = 21/165 (12%), Positives = 48/165 (29%), Gaps = 8/165 (4%)

Query: 11  RGGVGKSCLLLRFSDGSFT--TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI 68
           R  VGKS  +    +      TS             I  +   + +  +  A   +    
Sbjct: 31  RSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSERE 90

Query: 69  TTAYYRGAMGI----LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK 124
                          L       +       + ++  E      +  +++  KAD     
Sbjct: 91  AWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKG 150

Query: 125 RAVPTSKG--QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
           +    +K   Q L  +   +    S++T    ++ + +I + I +
Sbjct: 151 KWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMINR 195

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 35.4 bits (80), Expect = 0.002
 Identities = 26/177 (14%), Positives = 45/177 (25%), Gaps = 19/177 (10%)

Query: 11  RGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITT 70
           R  VGKS L+ R +           +         +              G  +      
Sbjct: 8   RSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEVQERI 67

Query: 71  AYYRGAM---------GILLVYDVTDESSFNNIRNWIRNIEQH-------ASDNVNKVLV 114
                             +LV D                I             ++  ++ 
Sbjct: 68  KDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVA 127

Query: 115 GNKADMDESKRAVPTSKGQALA---DEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
            NK D  ++ + V     +       E    F   SAK   N+E++   I   I++R
Sbjct: 128 VNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER 184

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	205
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	100.0
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	100.0
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.98
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.97
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.97
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.94
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.94
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.93
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.93
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.93
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.92
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.92
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.91
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.91
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.91
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.9
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.89
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.88
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.88
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.88
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.87
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.87
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.87
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.84
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.83
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.82
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.8
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.8
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.76
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.74
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.73
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.7
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.68
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.67
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.65
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.65
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.65
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.64
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.51
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.5
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.5
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.38
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.21
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.2
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.15
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.1
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.94
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.91
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.78
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.47
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.38
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.37
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.35
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.27
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.17
d1okkd2	207	GTPase domain of the signal recognition particle r	98.02
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.97
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.95
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.92
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.86
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.82
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.78
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.76
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.75
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.73
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.68
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.61
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.58
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.54
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.45
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.44
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.43
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.41
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.38
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.36
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.36
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.32
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.3
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.21
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.2
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.2
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.19
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.17
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.16
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.14
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.13
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.07
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.06
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.0
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.0
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.96
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.93
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.93
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.92
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.91
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.9
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.89
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.87
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.85
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.83
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.83
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	96.82
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.82
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.8
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.79
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.79
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.79
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.79
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.78
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.78
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.77
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.75
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.75
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.74
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.73
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.72
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.69
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.68
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.68
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.62
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.6
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.57
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.56
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.53
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.52
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.51
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.48
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.46
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.45
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.44
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.42
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.41
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.4
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.35
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.34
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.31
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.27
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.24
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.2
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.2
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.11
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.11
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.1
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.09
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.08
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.04
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.03
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.01
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.01
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.0
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.98
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.91
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.74
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.55
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.5
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	95.38
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	95.31
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.27
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.25
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.25
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.17
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.16
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.15
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.12
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.08
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	94.93
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.87
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	94.87
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.86
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	94.84
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	94.81
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	94.78
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.65
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.58
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	94.48
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.45
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	94.3
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	94.28
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.23
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.17
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.02
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	93.95
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	93.93
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	93.92
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	93.91
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	93.76
d1tuea_	205	Replication protein E1 helicase domain {Human papi	93.63
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	93.57
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	93.46
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	93.45
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	93.35
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	93.25
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	93.18
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	93.14
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	92.94
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	92.68
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	92.44
d1xpua3	289	Transcription termination factor Rho, ATPase domai	92.38
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	92.37
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	91.78
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	91.53
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	91.45
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	91.4
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	91.16
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	90.92
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	90.55
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	89.93
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	89.88
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	88.5
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	88.32
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	88.21
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	86.58
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	86.33
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	85.14
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	84.72
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	84.64
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	84.54
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	84.5
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	83.15
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	82.99
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	82.73
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	82.5
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	81.98
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	81.64
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	81.42
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	81.39
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	81.34
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	81.2
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	80.93

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-38  Score=233.38  Aligned_cols=166  Identities=25%  Similarity=0.419  Sum_probs=146.4

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   80 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   80 (205)
                      |..+||+++|++|||||||+++|+.+.+...+.||.+ +.......+++..+.+.+||++|++++..++..+++.+|+++
T Consensus         1 m~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i   79 (191)
T d2ngra_           1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL   79 (191)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CCceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eecceeEeeCCceeeeeccccccchhhhhhhhhcccccceee
Confidence            8899999999999999999999999999999999988 445566778889999999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC-----------CCccCHHHHHHHHHHhC-CcEEEEcC
Q 028686           81 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYG-IKFFETSA  148 (205)
Q Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~Sa  148 (205)
                      +|||+++++||+++..|+........+++|+++|+||.|+.+.           ...+..++++++++..+ ++|+|+||
T Consensus        80 lv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA  159 (191)
T d2ngra_          80 VCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA  159 (191)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCT
T ss_pred             cccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeC
Confidence            9999999999999987555554555578999999999998542           34578899999999865 79999999


Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q 028686          149 KTNLNVEQVFFSIARDIKQ  167 (205)
Q Consensus       149 ~~~~gi~~~~~~i~~~~~~  167 (205)
                      ++|.||+++|+.+++.+.+
T Consensus       160 k~~~~V~e~f~~l~~~~~~  178 (191)
T d2ngra_         160 LTQKGLKNVFDEAILAALE  178 (191)
T ss_dssp             TTCTTHHHHHHHHHHHHTS
T ss_pred             CCCcCHHHHHHHHHHHHhc
Confidence            9999999999999987643

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-38  Score=227.48  Aligned_cols=166  Identities=45%  Similarity=0.794  Sum_probs=155.4

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+|+|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..++++++++++|
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v   84 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILT   84 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEe
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||+++++++..+..|+..+.+.....+|+++|+||.|+.+ ...+..++++.+++..+++++++||++|.||+++|.+|+
T Consensus        85 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~-~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~l~  163 (171)
T d2ew1a1          85 YDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE-RREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLA  163 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             eecccchhhhhhhhhhhhhcccccccccEEEEEeeccccc-ccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHHHH
Confidence            9999999999999999999887777899999999999864 567888999999999999999999999999999999999


Q ss_pred             HHHHHHh
Q 028686          163 RDIKQRL  169 (205)
Q Consensus       163 ~~~~~~~  169 (205)
                      +.+....
T Consensus       164 ~~l~~~~  170 (171)
T d2ew1a1         164 CRLISEA  170 (171)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            8887654

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.8e-39  Score=229.03  Aligned_cols=162  Identities=36%  Similarity=0.663  Sum_probs=152.1

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+++|++|||||||+++|.++.+...+.||.+.++.......++..+.+.+||++|+.++..++..+++.++++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            58999999999999999999999999999999999888888899999999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||+++++||+++..|++.+.... +++|+++|+||+|+.+ +..+..++++.++++++++|+++||++|.||+++|++|+
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~iilVgnK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~  159 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLD-DSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA  159 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGG-GCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHH
T ss_pred             EeccchhhhhhcccccccccccC-CCceEEEeeccCCccc-ceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHH
Confidence            99999999999999999998776 5799999999999965 467888999999999999999999999999999999999


Q ss_pred             HHHH
Q 028686          163 RDIK  166 (205)
Q Consensus       163 ~~~~  166 (205)
                      +.+.
T Consensus       160 ~~~l  163 (164)
T d1z2aa1         160 EKHL  163 (164)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9875

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=6.4e-38  Score=225.83  Aligned_cols=164  Identities=51%  Similarity=0.896  Sum_probs=153.4

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+|+|++|||||||+++|.++.+...+.++.+.+.....+......+.+.+||+||++++..++..+++.+|++|+|
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv   84 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM   84 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||+++++++..+..|+..+........|+++++||.|+.+ ...+..++++.+++..+++|+++||++|.||+++|++|+
T Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~-~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~  163 (169)
T d3raba_          85 YDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED-ERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV  163 (169)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             EECccchhhhhhhhhhhhhhcccCCcceEEEEEeeccccc-ccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHHHH
Confidence            9999999999999999988877777899999999999865 456788999999999999999999999999999999999


Q ss_pred             HHHHH
Q 028686          163 RDIKQ  167 (205)
Q Consensus       163 ~~~~~  167 (205)
                      +.+.+
T Consensus       164 ~~i~e  168 (169)
T d3raba_         164 DVICE  168 (169)
T ss_dssp             HHHHT
T ss_pred             HHHhh
Confidence            98865

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-38  Score=227.85  Aligned_cols=165  Identities=36%  Similarity=0.744  Sum_probs=147.8

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+|+|++|||||||+++|+++.+.+.+.||.+.++....+..++..+.+.+||++|+.++..++..+++++|++++
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  161 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i  161 (205)
                      |||+++++||+.+..|+..+........|+++++||+|+.. +..+..++++.++++++++|+++||++|.||+++|.+|
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~-~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l  160 (167)
T d1z08a1          82 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK-ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL  160 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             EEeCCchhHHHhhhhhhhhcccccccccceeeecccccccc-ccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHH
Confidence            99999999999999999988777667789999999999965 56788999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 028686          162 ARDIKQ  167 (205)
Q Consensus       162 ~~~~~~  167 (205)
                      ++.+.+
T Consensus       161 ~~~i~~  166 (167)
T d1z08a1         161 CKRMIE  166 (167)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            998763

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8e-38  Score=224.86  Aligned_cols=164  Identities=37%  Similarity=0.682  Sum_probs=154.7

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   80 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   80 (205)
                      |+.+||+|+|++|||||||+++|.++++...+.+|.+..+.......+.....+.+||++|++++..++..+++.+++++
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   81 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence            67899999999999999999999999999999999998888888889999999999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686           81 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  160 (205)
Q Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  160 (205)
                      +|||++++++|+.+..|+..+.....++.|+++|+||.|+.+ ...+..++++.+++..+++|+++||++|.||+++|.+
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~  160 (167)
T d1z0ja1          82 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD-VREVMERDAKDYADSIHAIFVETSAKNAININELFIE  160 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhcc-ccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence            999999999999999999999888878899999999999965 5678899999999999999999999999999999999


Q ss_pred             HHHHH
Q 028686          161 IARDI  165 (205)
Q Consensus       161 i~~~~  165 (205)
                      |++.+
T Consensus       161 l~~~i  165 (167)
T d1z0ja1         161 ISRRI  165 (167)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            98875

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-38  Score=226.21  Aligned_cols=167  Identities=35%  Similarity=0.560  Sum_probs=151.5

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+|+|++|||||||+++|+++.+...+.++.. +...+.+.+++..+.+.+||++|++++..++..+++++|++|+
T Consensus         5 ~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i~   83 (173)
T d2fn4a1           5 ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLL   83 (173)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEE
T ss_pred             CeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc-cceeeEeccCCeeeeeeccccccccccccccchhhccceeeee
Confidence            358999999999999999999999999888888764 5666788999999999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  160 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  160 (205)
                      |||+++++||+.+..|+..+.+.. ..++|++||+||+|+.+ ...+..++++.+++.++++|+++||++|.||+++|++
T Consensus        84 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~  162 (173)
T d2fn4a1          84 VFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES-QRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQ  162 (173)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             ecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhh-ccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHHHH
Confidence            999999999999999999987654 36799999999999965 4567789999999999999999999999999999999


Q ss_pred             HHHHHHHHhc
Q 028686          161 IARDIKQRLA  170 (205)
Q Consensus       161 i~~~~~~~~~  170 (205)
                      |++.+.++++
T Consensus       163 l~~~i~k~~~  172 (173)
T d2fn4a1         163 LVRAVRKYQE  172 (173)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHhc
Confidence            9999877543

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.4e-38  Score=224.75  Aligned_cols=164  Identities=29%  Similarity=0.375  Sum_probs=134.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      +||+|+|++|||||||+++|.+..+.. ..++.+ +.+...+.+++..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~-~~~~~~-~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~   79 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAG-HTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   79 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC----------C-EEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCC-cCCeee-eeecceeeccccccceeeeecccccccceecccchhhhhhhceec
Confidence            799999999999999999999887543 334443 455677889999999999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           84 DVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        84 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      |+++++||+++..|+..+..... ..+|+++|+||+|+.+ ..++...+++.+++.++++|+++||++|.||+++|++|+
T Consensus        80 d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~  158 (168)
T d2gjsa1          80 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR-SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  158 (168)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHH
T ss_pred             cccccccccccccccchhhcccccccceEEEeecccchhh-hcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHH
Confidence            99999999999999999977653 6689999999999965 567889999999999999999999999999999999999


Q ss_pred             HHHHHHhc
Q 028686          163 RDIKQRLA  170 (205)
Q Consensus       163 ~~~~~~~~  170 (205)
                      +.+..++.
T Consensus       159 ~~i~~~~~  166 (168)
T d2gjsa1         159 RQIRLRRD  166 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            99877654

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-37  Score=223.07  Aligned_cols=162  Identities=45%  Similarity=0.809  Sum_probs=152.3

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+|+|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+|++++|
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv   83 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   83 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEE
Confidence            48999999999999999999999999999999999899999999999999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||+++++||..+..|+..+........|+++++||.|+.. ...+..++++.+++..+++|+++||++|.||+++|++|+
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i~  162 (166)
T d1z0fa1          84 YDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA-QRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAA  162 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             eccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchh-hcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999999999999888778899999999999865 566778899999999999999999999999999999999


Q ss_pred             HHH
Q 028686          163 RDI  165 (205)
Q Consensus       163 ~~~  165 (205)
                      +.+
T Consensus       163 ~~i  165 (166)
T d1z0fa1         163 KKI  165 (166)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            875

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-37  Score=224.00  Aligned_cols=164  Identities=31%  Similarity=0.463  Sum_probs=150.2

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      +.+||+|+|++|||||||+++|+++.+...+.||.+.++ ...+.+++..+.+.+||++|.+.+..+...+++.+|++|+
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   81 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence            458999999999999999999999999888899998765 4677899999999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  160 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  160 (205)
                      |||+++++||..+..|+..+.+.. ..++|+++|+||+|+.. .+.+..++++.++++++++|+++||++|.||+++|+.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~-~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  160 (167)
T d1xtqa1          82 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM-ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR  160 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred             hcccchhhhhhhhhhhhhhhhhcccccccceeeecccccccc-ccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence            999999999999999999997765 36799999999999965 5678899999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 028686          161 IARDIKQ  167 (205)
Q Consensus       161 i~~~~~~  167 (205)
                      |++.+.+
T Consensus       161 li~~~~K  167 (167)
T d1xtqa1         161 IILEAEK  167 (167)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhcC
Confidence            9988753

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-37  Score=222.42  Aligned_cols=168  Identities=43%  Similarity=0.734  Sum_probs=156.7

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+|+|++|||||||+++|..+.+...+.++.+.......+..++..+.+.+||++|++++..++..+++.++++|+|
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLV   84 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEE
Confidence            48999999999999999999999999999999999888888888899999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||.+++++|..+..|+..+.....+++|+++|+||+|+.. ...+..+++..+++..+++|+++||++|.|++++|++++
T Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~l~  163 (174)
T d2bmea1          85 YDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA-DREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCA  163 (174)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EecccchhHHHHhhhhcccccccCCceEEEEEEecccccc-hhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHH
Confidence            9999999999999999999888778899999999999865 567788889999999999999999999999999999999


Q ss_pred             HHHHHHhcc
Q 028686          163 RDIKQRLAD  171 (205)
Q Consensus       163 ~~~~~~~~~  171 (205)
                      +.+.++.+.
T Consensus       164 ~~i~~~~~~  172 (174)
T d2bmea1         164 RKILNKIES  172 (174)
T ss_dssp             HHHHHHHHS
T ss_pred             HHHHHHHhc
Confidence            999876554

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=2e-37  Score=223.00  Aligned_cols=163  Identities=36%  Similarity=0.626  Sum_probs=146.6

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+|+|++|||||||+++|+++++...+.||.+.++ ...+.+++..+.+.+||++|++++..++..+++++|++++|
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccc-ccccccccccccccccccccccchhhhhhhcccccceeEEE
Confidence            57999999999999999999999999999999998665 46678899999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  161 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i  161 (205)
                      ||++++++|+.+..|++.+.+.. .+++|+++|+||+|+.+ ...+..++++.+++.++++|+++||++|.||+++|++|
T Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l  161 (168)
T d1u8za_          83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED-KRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             eeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccc-cccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            99999999999999999997764 36799999999999965 56788999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 028686          162 ARDIKQ  167 (205)
Q Consensus       162 ~~~~~~  167 (205)
                      ++.+..
T Consensus       162 ~~~i~~  167 (168)
T d1u8za_         162 MREIRA  167 (168)
T ss_dssp             HHHHHT
T ss_pred             HHHHHC
Confidence            988753

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-37  Score=223.18  Aligned_cols=164  Identities=37%  Similarity=0.628  Sum_probs=150.4

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   80 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   80 (205)
                      |+.+||+++|++|||||||+++|+++.+...+.++.+ +.+.....+++..+.+.+||++|++.+..+...+++++|+++
T Consensus         1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~i   79 (167)
T d1kaoa_           1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI   79 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhccccee
Confidence            8889999999999999999999999999888888887 566677888999999999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHH
Q 028686           81 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF  159 (205)
Q Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  159 (205)
                      +|||++++++|.++..|+..+.... .+++|++||+||+|+.. ...+..++++.+++.++++|+++||++|.||+++|+
T Consensus        80 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~  158 (167)
T d1kaoa_          80 LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES-EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFA  158 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHH
T ss_pred             eeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhh-cccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHH
Confidence            9999999999999999999987654 36799999999999965 456778899999999999999999999999999999


Q ss_pred             HHHHHHH
Q 028686          160 SIARDIK  166 (205)
Q Consensus       160 ~i~~~~~  166 (205)
                      +|++++.
T Consensus       159 ~i~~~i~  165 (167)
T d1kaoa_         159 EIVRQMN  165 (167)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHc
Confidence            9998764

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-37  Score=222.23  Aligned_cols=161  Identities=39%  Similarity=0.711  Sum_probs=151.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      +||+|+|++|||||||+++|.++++...+.++.+.+........++..+.+.+||++|++++...+..++..++++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            58999999999999999999999999999999998888888888999999999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHH
Q 028686           84 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR  163 (205)
Q Consensus        84 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~  163 (205)
                      |++++++|+++..|+..+.....+++|+++|+||.|+.+ ...+..+++..++++++++|+++||++|.||+++|++|++
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~  159 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD-KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAA  159 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhh-hhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHH
Confidence            999999999999999999888778899999999999965 4567788999999999999999999999999999999998


Q ss_pred             HH
Q 028686          164 DI  165 (205)
Q Consensus       164 ~~  165 (205)
                      ++
T Consensus       160 ~l  161 (164)
T d1yzqa1         160 AL  161 (164)
T ss_dssp             HS
T ss_pred             hh
Confidence            75

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.9e-37  Score=220.77  Aligned_cols=164  Identities=34%  Similarity=0.542  Sum_probs=149.4

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+++|++|||||||+++|+++.+.+.+.||.+.. +.+.+.+++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv   82 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDS-YLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV   82 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEE-EEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeec-cccccccccccccccccccccccccccchhhhhhhccEEEEe
Confidence            5899999999999999999999999988888888744 456678899999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCC-CHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL-NVEQVFFS  160 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~~~~~  160 (205)
                      ||+++++||+++..|+..+.+.. ..++|+++++||+|+.. ...+..+++.++++.++++|+++||+++. ||+++|+.
T Consensus        83 ~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~-~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~~  161 (169)
T d1x1ra1          83 YSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH-LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHD  161 (169)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCST-TCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHH
T ss_pred             cccccchhhhccchhhHHHHhhccccCccEEEEecccchhh-hceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHHH
Confidence            99999999999999999987764 36799999999999965 56788999999999999999999999885 99999999


Q ss_pred             HHHHHHHH
Q 028686          161 IARDIKQR  168 (205)
Q Consensus       161 i~~~~~~~  168 (205)
                      |++.+.++
T Consensus       162 l~~~i~~~  169 (169)
T d1x1ra1         162 LVRVIRQQ  169 (169)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhC
Confidence            99998763

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-37  Score=221.07  Aligned_cols=165  Identities=37%  Similarity=0.584  Sum_probs=146.6

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+|+|++|||||||+++|+++.+...+.||.+ +.....+.+++..+.+.+||++|...+......+++.+|++++|
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   83 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV   83 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEEEe
Confidence            48999999999999999999999999888888877 56667888999999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  161 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i  161 (205)
                      ||+++++||+.+..|+..+.... ....|++||+||.|+.+ ...+..+++..+++.++++|+++||++|.||+++|++|
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l  162 (171)
T d2erya1          84 FSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH-QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHEL  162 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTT-SCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             eccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhh-hccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHH
Confidence            99999999999999998876654 36789999999999965 56788999999999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 028686          162 ARDIKQRL  169 (205)
Q Consensus       162 ~~~~~~~~  169 (205)
                      ++.+.+++
T Consensus       163 ~~~i~k~~  170 (171)
T d2erya1         163 VRVIRKFQ  170 (171)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            99986554

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.9e-37  Score=225.87  Aligned_cols=167  Identities=53%  Similarity=0.942  Sum_probs=155.8

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+|+|++|||||||+++|..+.+...+.+|.+..+....+.+++..+.+.+|||+|++++..++..++++++++|+|
T Consensus         6 ~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v   85 (194)
T d2bcgy1           6 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIV   85 (194)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            58999999999999999999999999999999999888888999999999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||++++++|..+..|+..+.+....+.|+++|+||.|+.+ ...+..++...++...++.|+++||++|.||+++|++|+
T Consensus        86 ~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~~l~  164 (194)
T d2bcgy1          86 YDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD-KRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMA  164 (194)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             EeCcchhhhhhHhhhhhhhhhcccCCceEEEEEecccccc-ccchhHHHHhhhhhccCcceEEEecCcCccHHHHHHHHH
Confidence            9999999999999999999887778899999999999976 567888899999999999999999999999999999999


Q ss_pred             HHHHHHhc
Q 028686          163 RDIKQRLA  170 (205)
Q Consensus       163 ~~~~~~~~  170 (205)
                      +.+.+...
T Consensus       165 ~~i~~~~~  172 (194)
T d2bcgy1         165 RQIKESMS  172 (194)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHHhh
Confidence            98876543

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.9e-37  Score=221.61  Aligned_cols=163  Identities=30%  Similarity=0.490  Sum_probs=145.1

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      +.||+|+|++|||||||+++|.++.+...+.||.+ +.......+++..+.+.+||++|++.+..++..+++++|++|+|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            57999999999999999999999999988889887 55557778899999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC-----------CCccCHHHHHHHHHHhC-CcEEEEcCCC
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYG-IKFFETSAKT  150 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  150 (205)
                      ||+++++||+++..|+..+.....+++|++||+||+|+.+.           ...+..++++.++++++ ++|+|+||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            99999999999887665555555578999999999999642           24577889999999988 5899999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 028686          151 NLNVEQVFFSIARDIK  166 (205)
Q Consensus       151 ~~gi~~~~~~i~~~~~  166 (205)
                      |.||+++|+.++++++
T Consensus       161 ~~gi~e~F~~i~~~~l  176 (177)
T d1kmqa_         161 KDGVREVFEMATRAAL  176 (177)
T ss_dssp             CTTHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999999876

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.4e-37  Score=221.02  Aligned_cols=168  Identities=48%  Similarity=0.856  Sum_probs=151.0

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+|+|++|||||||+++|+++++...+.++.+...........+..+.+.+||++|++.+..++..++..+|++|+|
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv   82 (173)
T d2a5ja1           3 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV   82 (173)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEE
Confidence            48999999999999999999999999888888888888888888889999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||++++++|+++..|+..+......++|++||+||.|+.. ...+..+++..+++..+++|+++||++|.||+++|.+++
T Consensus        83 ~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~-~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~  161 (173)
T d2a5ja1          83 YDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES-RRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTA  161 (173)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             EeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhh-hhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999999999888778899999999999865 456788899999999999999999999999999999999


Q ss_pred             HHHHHHhcc
Q 028686          163 RDIKQRLAD  171 (205)
Q Consensus       163 ~~~~~~~~~  171 (205)
                      +.+.++.++
T Consensus       162 ~~i~~~~~~  170 (173)
T d2a5ja1         162 KEIYRKIQQ  170 (173)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHc
Confidence            998876543

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-37  Score=220.51  Aligned_cols=164  Identities=34%  Similarity=0.633  Sum_probs=148.3

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   80 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   80 (205)
                      |+.+||+++|++|||||||+++|+.+.+...+.|+.+..+ ...+.+++..+.+.+||++|+..+..++..+++++|++|
T Consensus         1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   79 (167)
T d1c1ya_           1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA   79 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeeeEEEeccccccCcccccccccccccccceeE
Confidence            8899999999999999999999999999999999888554 466678888999999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHh-CCcEEEEcCCCCCCHHHHH
Q 028686           81 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEQVF  158 (205)
Q Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~~~  158 (205)
                      +|||+++++||+++..|+..+.+.. .+++|+++|+||.|+.. ...+..+++..+++++ +++|+++||++|.||+++|
T Consensus        80 lv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F  158 (167)
T d1c1ya_          80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED-ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF  158 (167)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHH
T ss_pred             EeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCccc-ccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHH
Confidence            9999999999999999999987754 46799999999999965 4567788888888875 6899999999999999999


Q ss_pred             HHHHHHHH
Q 028686          159 FSIARDIK  166 (205)
Q Consensus       159 ~~i~~~~~  166 (205)
                      ++|++++.
T Consensus       159 ~~l~~~i~  166 (167)
T d1c1ya_         159 YDLVRQIN  166 (167)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            99998874

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.8e-37  Score=219.17  Aligned_cols=164  Identities=36%  Similarity=0.622  Sum_probs=149.7

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   80 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   80 (205)
                      |..+||+|+|++|||||||+++|+++.+...+.++.+..+. ..+...+..+.+.+||++|.+.+...+..+++.+++++
T Consensus         1 m~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~i   79 (166)
T d1ctqa_           1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   79 (166)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeec-cceeeeceeeeeeeeeccCccccccchhhhhhcccccc
Confidence            77899999999999999999999999999988999886655 44667888999999999999999999999999999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHH
Q 028686           81 LVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF  159 (205)
Q Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  159 (205)
                      +|||++++++|+.+..|+..+.+... +++|+++|+||+|+.  ...+..++++.+++.++++|+++||++|.||+++|+
T Consensus        80 iv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~  157 (166)
T d1ctqa_          80 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA--ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY  157 (166)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCS--CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             eeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccc--cccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHH
Confidence            99999999999999999999987653 579999999999985  356778999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 028686          160 SIARDIKQ  167 (205)
Q Consensus       160 ~i~~~~~~  167 (205)
                      +|++.+.+
T Consensus       158 ~i~~~i~~  165 (166)
T d1ctqa_         158 TLVREIRQ  165 (166)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            99998864

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-37  Score=224.11  Aligned_cols=164  Identities=27%  Similarity=0.460  Sum_probs=144.6

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+|+|++|||||||+++|+++.+...+.||.+ +...+.+...+..+.+.+||++|++.+..++..+++.+|++++
T Consensus         8 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~-~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~il   86 (185)
T d2atxa1           8 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI   86 (185)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC-CCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcee-eeeeEEEeeCCceEEeecccccccchhhhhhhhcccccceeee
Confidence            458999999999999999999999999999999887 4556677788889999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC-----------CCCccCHHHHHHHHHHhC-CcEEEEcCC
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE-----------SKRAVPTSKGQALADEYG-IKFFETSAK  149 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~-----------~~~~~~~~~~~~~~~~~~-~~~~~~Sa~  149 (205)
                      |||+++++||+++..|+..+.+...+++|+++|+||+|+.+           ..+.+..+++.+++++++ ++|+|+||+
T Consensus        87 v~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~SAk  166 (185)
T d2atxa1          87 CFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSAL  166 (185)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTT
T ss_pred             ccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEecCC
Confidence            99999999999887655555444457899999999999864           235678899999999988 799999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 028686          150 TNLNVEQVFFSIARDIK  166 (205)
Q Consensus       150 ~~~gi~~~~~~i~~~~~  166 (205)
                      +|.||+++|+.++++++
T Consensus       167 ~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         167 TQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             TCTTHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHc
Confidence            99999999999999874

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-36  Score=219.43  Aligned_cols=168  Identities=45%  Similarity=0.788  Sum_probs=151.6

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+|+|++|||||||+++|.++.+...+.++.+.+.....+.+++..+.+.+||++|++.+..++..+++.++++++|
T Consensus         4 ~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v   83 (175)
T d2f9la1           4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLV   83 (175)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEE
Confidence            58999999999999999999999999988888888888888999999999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||.++++||..+..|+..+..+..+++|+++|+||+|+.+ ......+....+...++.+|+++||++|.|++++|++++
T Consensus        84 ~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l~  162 (175)
T d2f9la1          84 YDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH-LRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL  162 (175)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccc-cccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHHHH
Confidence            9999999999999999999988878899999999999965 345566777888889999999999999999999999999


Q ss_pred             HHHHHHhcc
Q 028686          163 RDIKQRLAD  171 (205)
Q Consensus       163 ~~~~~~~~~  171 (205)
                      +.+.+....
T Consensus       163 ~~i~~~~~~  171 (175)
T d2f9la1         163 TEIYRIVSQ  171 (175)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHhhh
Confidence            998765543

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.6e-37  Score=222.65  Aligned_cols=166  Identities=67%  Similarity=1.143  Sum_probs=125.5

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+|+|.+|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+|
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~v   85 (173)
T d2fu5c1           6 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLV   85 (173)
T ss_dssp             EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEEE
Confidence            48999999999999999999999999889999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||+++++||..+..|+..+......+.|+++|+||.|+.. ......+++..++...+++|+++||++|.||+++|++|+
T Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~l~  164 (173)
T d2fu5c1          86 YDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA  164 (173)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS-CCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHH
T ss_pred             EECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchh-hcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999999999999887778899999999999865 455667888899999999999999999999999999999


Q ss_pred             HHHHHHh
Q 028686          163 RDIKQRL  169 (205)
Q Consensus       163 ~~~~~~~  169 (205)
                      +.+..+.
T Consensus       165 ~~i~~k~  171 (173)
T d2fu5c1         165 RDIKAKM  171 (173)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9987654

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.1e-37  Score=220.48  Aligned_cols=163  Identities=42%  Similarity=0.745  Sum_probs=153.1

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+++|++|||||||+++|+++.+...+.++.+.++........+..+.+.+||++|++.+..++..++++++++++|
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   85 (170)
T d1r2qa_           6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVV   85 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEEE
Confidence            47999999999999999999999999999999999999888889999999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||++++++|+++..|+..+.+...+++|+++|+||+|+.+ ...+..++++.+++.++++|+++||++|.||+++|++|+
T Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~-~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~  164 (170)
T d1r2qa_          86 YDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN-KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA  164 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             eccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccc-cccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHH
Confidence            9999999999999999999887778899999999999965 567889999999999999999999999999999999998


Q ss_pred             HHHH
Q 028686          163 RDIK  166 (205)
Q Consensus       163 ~~~~  166 (205)
                      +.+.
T Consensus       165 ~~i~  168 (170)
T d1r2qa_         165 KKLP  168 (170)
T ss_dssp             HTSC
T ss_pred             HHHh
Confidence            8654

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-37  Score=222.30  Aligned_cols=161  Identities=33%  Similarity=0.480  Sum_probs=145.2

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+++|++|||||||+++|+++.+...+.||.+..+ .....+++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecc-ccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            47999999999999999999999999889999988544 45667899999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  160 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  160 (205)
                      ||++++++|+++..|+..+.....  .++|+++|+||+|+.. ...+..++++.+++.++++|+++||++|.||+++|+.
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~-~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~  159 (171)
T d2erxa1          81 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP-SREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  159 (171)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             eecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccc-cccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHH
Confidence            999999999999999998876543  6799999999999954 5668889999999999999999999999999999999


Q ss_pred             HHHHH
Q 028686          161 IARDI  165 (205)
Q Consensus       161 i~~~~  165 (205)
                      |++.+
T Consensus       160 l~~~~  164 (171)
T d2erxa1         160 LLNLE  164 (171)
T ss_dssp             HHHTC
T ss_pred             HHHHH
Confidence            98755

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-38  Score=226.38  Aligned_cols=162  Identities=29%  Similarity=0.591  Sum_probs=143.2

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+++|++|||||||+++|+++.+...+.||.+.++..+.+..++..+.+.+||++|+..+..++..++++++++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            58999999999999999999999999999999999999999998999999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||+++++||+++..|+..+.+.. +++|+++|+||+|+....   ..++...++...+++|+++||++|.||+++|++|+
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~---~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~  158 (170)
T d1i2ma_          83 FDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRK---VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  158 (170)
T ss_dssp             EETTSGGGGTTHHHHHHHHHHHH-CSCCEEEEEECCCCSCSC---CTTTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHH
T ss_pred             cccccccccchhHHHHHHHhhcc-CCCceeeecchhhhhhhh---hhhHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999999988766 579999999999996432   23455678888899999999999999999999999


Q ss_pred             HHHHHH
Q 028686          163 RDIKQR  168 (205)
Q Consensus       163 ~~~~~~  168 (205)
                      +.+...
T Consensus       159 ~~l~~~  164 (170)
T d1i2ma_         159 RKLIGD  164 (170)
T ss_dssp             HHHHTC
T ss_pred             HHHccC
Confidence            988653

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-36  Score=217.72  Aligned_cols=163  Identities=34%  Similarity=0.569  Sum_probs=144.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      +||+++|++|||||||+++|+++.+...+.||.+.++. ..+..++..+.+.+||++|++.+. ....+++.++++++||
T Consensus         3 iKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~-~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~   80 (168)
T d2atva1           3 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVY   80 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccc-ccccccccceEEEEeecccccccc-cchhhhcccccceeec
Confidence            79999999999999999999999999999999987765 445678899999999999998764 4566888999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCC-CHHHHHHHH
Q 028686           84 DVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL-NVEQVFFSI  161 (205)
Q Consensus        84 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~~~~~i  161 (205)
                      |+++++||..+..|+..+..... ++.|+++|+||+|+.. .+.+..++++.++++++++|+++||++|. ||+++|..|
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~-~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l  159 (168)
T d2atva1          81 DITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH-SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL  159 (168)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred             ccCCccchhhhhhhcccccccccccCcceeeeccchhhhh-hccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHH
Confidence            99999999999998877655443 6799999999999965 56789999999999999999999999998 499999999


Q ss_pred             HHHHHHHh
Q 028686          162 ARDIKQRL  169 (205)
Q Consensus       162 ~~~~~~~~  169 (205)
                      ++.+.+++
T Consensus       160 ~~~i~~~r  167 (168)
T d2atva1         160 CREVRRRR  167 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99887654

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.7e-36  Score=217.41  Aligned_cols=163  Identities=41%  Similarity=0.713  Sum_probs=151.6

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+++|++|||||||+++|.++.+...+.||.+.++..+.+..++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence            58999999999999999999999999999999999999989999999999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC--CCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES--KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  160 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  160 (205)
                      ||+++++||+++..|+..+........|+++++||.|+.+.  .+.+..++++.+++..+++|+++||++|.||+++|..
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~~  162 (170)
T d1ek0a_          83 YDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLG  162 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHH
Confidence            99999999999999999888877778999999999998542  4577889999999999999999999999999999999


Q ss_pred             HHHHH
Q 028686          161 IARDI  165 (205)
Q Consensus       161 i~~~~  165 (205)
                      |++.+
T Consensus       163 i~~~i  167 (170)
T d1ek0a_         163 IGEKI  167 (170)
T ss_dssp             HHTTS
T ss_pred             HHHHh
Confidence            87654

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-36  Score=221.25  Aligned_cols=167  Identities=44%  Similarity=0.811  Sum_probs=149.7

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECC----------EEEEEEEEeCCChhhhhhhhhhh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG----------KRIKLQIWDTAGQERFRTITTAY   72 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----------~~~~~~i~D~~g~~~~~~~~~~~   72 (205)
                      .+||+|+|++|||||||+++|+++.+...+.++.+.++....+.+++          ..+.+.+||++|++++..++..+
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~~   84 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF   84 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHHH
Confidence            58999999999999999999999999888889888887777665533          35789999999999999999999


Q ss_pred             ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCC
Q 028686           73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN  151 (205)
Q Consensus        73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  151 (205)
                      ++++|++|+|||++++++|+.+..|+..+.... ....|+++|+||.|+.+ ...+..+++.+++++++++|+++||++|
T Consensus        85 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~-~~~v~~~e~~~~~~~~~~~~~e~Sak~~  163 (186)
T d2f7sa1          85 FRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD-QREVNERQARELADKYGIPYFETSAATG  163 (186)
T ss_dssp             HTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCCEEEEBTTTT
T ss_pred             HhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchh-hhcchHHHHHHHHHHcCCEEEEEeCCCC
Confidence            999999999999999999999999998886654 36689999999999965 5678899999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhc
Q 028686          152 LNVEQVFFSIARDIKQRLA  170 (205)
Q Consensus       152 ~gi~~~~~~i~~~~~~~~~  170 (205)
                      +||+++|++|++.+.++.+
T Consensus       164 ~~i~e~f~~l~~~i~~k~~  182 (186)
T d2f7sa1         164 QNVEKAVETLLDLIMKRME  182 (186)
T ss_dssp             BTHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHH
Confidence            9999999999999887654

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.1e-36  Score=215.64  Aligned_cols=164  Identities=57%  Similarity=1.034  Sum_probs=147.1

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+++|++|||||||+++|+.+++...+.+|.+.++....+.+++..+.+.+||+||++.+..++..++++++++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  162 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  162 (205)
                      ||+++++|++.+..|+..+........|++++++|.|+.  ......+++++++..++++|+++||++|+||+++|++|+
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~  159 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA  159 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT--TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             EECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhh--hhhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHH
Confidence            999999999999999999988887788999999999985  355778899999999999999999999999999999999


Q ss_pred             HHHHHH
Q 028686          163 RDIKQR  168 (205)
Q Consensus       163 ~~~~~~  168 (205)
                      +.+.++
T Consensus       160 ~~i~~k  165 (166)
T d1g16a_         160 KLIQEK  165 (166)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            988764

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-35  Score=213.70  Aligned_cols=163  Identities=50%  Similarity=0.917  Sum_probs=141.9

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCC-CcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      .+||+|+|+++||||||+++|+++.+.. .+.++.+.++....+..++..+.+.+|||+|++++..++..+++++|++++
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~   85 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLL   85 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeEE
Confidence            5899999999999999999999998754 456667888888889999999999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  161 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i  161 (205)
                      |||+++++++..+..|+..+........|+++|+||.|+.+ ...+..+++..+++.++++|+++||++|.||+++|++|
T Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~-~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~l  164 (170)
T d2g6ba1          86 LYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH-ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAI  164 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS-CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             EecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhh-cccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence            99999999999999999988887777899999999999865 56788899999999999999999999999999999999


Q ss_pred             HHHHH
Q 028686          162 ARDIK  166 (205)
Q Consensus       162 ~~~~~  166 (205)
                      ++.+.
T Consensus       165 ~~~i~  169 (170)
T d2g6ba1         165 AKELK  169 (170)
T ss_dssp             HHHHH
T ss_pred             HHHcC
Confidence            98875

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-35  Score=213.06  Aligned_cols=166  Identities=45%  Similarity=0.768  Sum_probs=153.2

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+|+|++|||||||+++|.++.+...+.++.+..+....+.+++..+.+.+||++|++++..++..+++.+|++++|
T Consensus         7 ~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v   86 (177)
T d1x3sa1           7 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILV   86 (177)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            58999999999999999999999999999999999888888899999999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  161 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i  161 (205)
                      ||+++++++..+..|+..+.+... ...|+++++||.|..  ...+..+++..+++.++++|+++||++|.||+++|+++
T Consensus        87 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~--~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~l  164 (177)
T d1x3sa1          87 YDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE--NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEEL  164 (177)
T ss_dssp             EETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS--SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EECCCccccccchhhhhhhcccccccceeeEEEeeccccc--cccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHH
Confidence            999999999999999999976543 568999999999974  46788899999999999999999999999999999999


Q ss_pred             HHHHHHHhc
Q 028686          162 ARDIKQRLA  170 (205)
Q Consensus       162 ~~~~~~~~~  170 (205)
                      ++.+.+...
T Consensus       165 ~~~l~~~p~  173 (177)
T d1x3sa1         165 VEKIIQTPG  173 (177)
T ss_dssp             HHHHHTSGG
T ss_pred             HHHHccCcc
Confidence            999987543

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-35  Score=213.43  Aligned_cols=164  Identities=28%  Similarity=0.409  Sum_probs=141.8

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCC---hhhhhhhhhhhccCCcE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAG---QERFRTITTAYYRGAMG   78 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g---~~~~~~~~~~~~~~~d~   78 (205)
                      .+||+++|++|||||||+++|.+..+. ....++.+.+++.+.+.++++.+.+.+||+++   ++++  ++..+++.+|+
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~~   80 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDA   80 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCSE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccce
Confidence            589999999999999999999988754 44556777788888899999999999999764   4444  56778999999


Q ss_pred             EEEEEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHH
Q 028686           79 ILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV  157 (205)
Q Consensus        79 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  157 (205)
                      +|+|||+++++||+++..|+..+.... .+++|+++|+||+|+.+ ...+..++++.+++.++++|+++||++|.||+++
T Consensus        81 ~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~-~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~  159 (172)
T d2g3ya1          81 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR-CREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL  159 (172)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             eeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccc-cccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHH
Confidence            999999999999999999999887654 36799999999999965 5678899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 028686          158 FFSIARDIKQRL  169 (205)
Q Consensus       158 ~~~i~~~~~~~~  169 (205)
                      |+.|++.+..++
T Consensus       160 f~~l~~~i~~rr  171 (172)
T d2g3ya1         160 FEGIVRQVRLRR  171 (172)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcc
Confidence            999999987654

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-35  Score=214.71  Aligned_cols=168  Identities=41%  Similarity=0.682  Sum_probs=134.7

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEE-CCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      .|||+++|++|||||||+++|+++++...+.++.+.......... +...+.+.+||++|++++..++..+++.++++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            589999999999999999999999998888888776555555443 4455779999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC-CcEEEEcCCCCCCHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQ  156 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~  156 (205)
                      |||++++.||..+..|++.+.....    .++|+++|+||+|+.+....+..++++++++.++ ++|+++||++|.||++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e  161 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDT  161 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHH
T ss_pred             EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Confidence            9999999999999999999876432    4789999999999976555678889999999986 7999999999999999


Q ss_pred             HHHHHHHHHHHHhc
Q 028686          157 VFFSIARDIKQRLA  170 (205)
Q Consensus       157 ~~~~i~~~~~~~~~  170 (205)
                      +|++|++.+.++++
T Consensus       162 ~f~~l~~~~l~~~~  175 (175)
T d1ky3a_         162 AFEEIARSALQQNQ  175 (175)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhccC
Confidence            99999999987653

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-35  Score=214.25  Aligned_cols=164  Identities=29%  Similarity=0.497  Sum_probs=142.6

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      +.|||+|+|++|||||||+++|+.+.+...+.+|.+ +.....+..++..+.+.+||++|++.+..++..+++.+|++++
T Consensus         4 ~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (183)
T d1mh1a_           4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (183)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             eeEEEEEECCCCCCHHHHHHHHHhCCCCccccccee-eceeeeeeccCcceEEEeecccccccchhhhhhcccccceeee
Confidence            468999999999999999999999999999999887 4455667789999999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC-----------CCccCHHHHHHHHHHhC-CcEEEEcCC
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYG-IKFFETSAK  149 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~Sa~  149 (205)
                      |||+++++||+++..|+....+....++|++||+||+|+.+.           .......++..+++..+ ++|+|+||+
T Consensus        83 v~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SAk  162 (183)
T d1mh1a_          83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  162 (183)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             eeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCCC
Confidence            999999999999987444444444568999999999998542           23456778888888887 799999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 028686          150 TNLNVEQVFFSIARDIK  166 (205)
Q Consensus       150 ~~~gi~~~~~~i~~~~~  166 (205)
                      +|.||+++|+.|++.++
T Consensus       163 ~~~~V~e~F~~l~~~il  179 (183)
T d1mh1a_         163 TQRGLKTVFDEAIRAVL  179 (183)
T ss_dssp             TCTTHHHHHHHHHHHHS
T ss_pred             CCcCHHHHHHHHHHHHc
Confidence            99999999999999875

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.7e-35  Score=213.86  Aligned_cols=164  Identities=21%  Similarity=0.397  Sum_probs=144.2

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      ++||+++|++|||||||+++|+.+.+...+.||.+ +.....+.+++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-ecccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            68999999999999999999999999999999886 45556677888999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC-----------CCccCHHHHHHHHHHhC-CcEEEEcCCC
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYG-IKFFETSAKT  150 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  150 (205)
                      ||+++++||+.+..|+........+++|+++||||+|+...           ...+..+++..++++.+ .+|+|+||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~  160 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ  160 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred             eecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCC
Confidence            99999999999988665554444568999999999998542           35578899999999987 5899999999


Q ss_pred             CC-CHHHHHHHHHHHHHH
Q 028686          151 NL-NVEQVFFSIARDIKQ  167 (205)
Q Consensus       151 ~~-gi~~~~~~i~~~~~~  167 (205)
                      |. +++++|+.+++.+.+
T Consensus       161 ~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         161 SENSVRDIFHVATLACVN  178 (179)
T ss_dssp             BHHHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHhc
Confidence            97 599999999998865

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-34  Score=207.97  Aligned_cols=162  Identities=40%  Similarity=0.698  Sum_probs=145.0

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+|+|++|||||||+++|.++.+...+.+|.+..+.......++..+.+.+||++|+..+...+..++..+++++++
T Consensus         6 ~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~~   85 (174)
T d1wmsa_           6 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLT   85 (174)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEEEE
Confidence            47999999999999999999999999999999999888888889999999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC-CcEEEEcCCCCCCHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQV  157 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~----~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~  157 (205)
                      ||.+++.||+.+..|++.+.....    +++|+++|+||.|+.  +..+..+++++++++.+ ++|+++||++|.||+++
T Consensus        86 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~--~~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~  163 (174)
T d1wmsa_          86 FSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS--ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAA  163 (174)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS--SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHH
T ss_pred             EeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchh--hccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHHH
Confidence            999999999999999998876532    568999999999995  35788999999998765 89999999999999999


Q ss_pred             HHHHHHHHH
Q 028686          158 FFSIARDIK  166 (205)
Q Consensus       158 ~~~i~~~~~  166 (205)
                      |++|++.++
T Consensus       164 f~~l~~~il  172 (174)
T d1wmsa_         164 FEEAVRRVL  172 (174)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999875

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-34  Score=206.89  Aligned_cols=159  Identities=42%  Similarity=0.794  Sum_probs=143.7

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh-hhhhhhccCCcEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-TITTAYYRGAMGIL   80 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~d~~i   80 (205)
                      +.+||+++|++|||||||+++|+++++...+.++.+..+......+......+.+||++|...+. ..+..+++++|++|
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            36899999999999999999999999999999999988888888999999999999999988665 45678899999999


Q ss_pred             EEEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCC---CCCHHH
Q 028686           81 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT---NLNVEQ  156 (205)
Q Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~gi~~  156 (205)
                      +|||+++++||+.+..|+..+.+.. .+++|++||+||+|+.+ ...+..++++.++++++++|+++||++   ++||++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e  159 (165)
T d1z06a1          81 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS-AIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEA  159 (165)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHH
T ss_pred             EEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchh-ccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHH
Confidence            9999999999999999999997765 36799999999999965 456899999999999999999999997   469999


Q ss_pred             HHHHH
Q 028686          157 VFFSI  161 (205)
Q Consensus       157 ~~~~i  161 (205)
                      +|++|
T Consensus       160 ~F~~l  164 (165)
T d1z06a1         160 IFMTL  164 (165)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99987

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.9e-34  Score=209.18  Aligned_cols=167  Identities=39%  Similarity=0.676  Sum_probs=150.2

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+|+|.+|||||||+++|+++++...+.||.+.++..+.....+..+.+.+||++|+..+...+..++..++++++|
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHH-hCCcEEEEcCCCCCCHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAVPTSKGQALADE-YGIKFFETSAKTNLNVEQV  157 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~----~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~~  157 (205)
                      ||.+++.++..+..|++.+.....    .++|+++|+||+|+.+  ..+..++..+++.. .+++++++||++|.||+++
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~  159 (184)
T d1vg8a_          82 FDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN--RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQA  159 (184)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC--CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHH
T ss_pred             ecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc--cchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHH
Confidence            999999999999999998876542    4689999999999854  55777777777654 5689999999999999999


Q ss_pred             HHHHHHHHHHHhcc
Q 028686          158 FFSIARDIKQRLAD  171 (205)
Q Consensus       158 ~~~i~~~~~~~~~~  171 (205)
                      |+++++.+.++...
T Consensus       160 f~~l~~~i~~~~~~  173 (184)
T d1vg8a_         160 FQTIARNALKQETE  173 (184)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccc
Confidence            99999998776553

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-32  Score=199.30  Aligned_cols=164  Identities=23%  Similarity=0.327  Sum_probs=137.4

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      -.+||+++|++|||||||+++|+++.+.. +.++.+. .+.+.+.+++..+.+.+||++|+..+     .+++.+|++|+
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~t~~~-~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~il   76 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESE-QYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIF   76 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCC-CCCSSCE-EEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCC-cCCccce-eEEEEeecCceEEEEEEeeccccccc-----ccccccceeEE
Confidence            45899999999999999999999999854 3455554 44677889999999999999998754     36788999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhc---CCCCcEEEEEeCCCCCCC-CCccCHHHHHHHHHH-hCCcEEEEcCCCCCCHHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHA---SDNVNKVLVGNKADMDES-KRAVPTSKGQALADE-YGIKFFETSAKTNLNVEQ  156 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~---~~~~piiiv~nK~Dl~~~-~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~  156 (205)
                      |||+++++||+++..|+..+....   ...+|+++|+||.|+... ...+..++++.++.. .+++|+++||++|.|+++
T Consensus        77 Vfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~  156 (175)
T d2bmja1          77 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDR  156 (175)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHH
T ss_pred             EeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHH
Confidence            999999999999999999886553   256899999999998543 345677888888654 568999999999999999


Q ss_pred             HHHHHHHHHHHHhccc
Q 028686          157 VFFSIARDIKQRLADT  172 (205)
Q Consensus       157 ~~~~i~~~~~~~~~~~  172 (205)
                      +|..+++.+...+.++
T Consensus       157 ~F~~l~~~i~~~~~~~  172 (175)
T d2bmja1         157 VFQEVAQKVVTLRKQQ  172 (175)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhc
Confidence            9999999998776543

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=100.00  E-value=5.3e-33  Score=198.87  Aligned_cols=156  Identities=20%  Similarity=0.363  Sum_probs=129.6

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+++|++|||||||+++|.++.+...+.||.+.++.  .+..++  +.+.+||+||++.+...+..++..++++++|
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeee--eeeeee--EEEEEeeccccccccccccccccccchhhcc
Confidence            489999999999999999999999998888999886554  344544  7899999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHH-----HHHhCCcEEEEcCCCCCCHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQAL-----ADEYGIKFFETSAKTNLNVEQ  156 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~  156 (205)
                      ||++++++|+.+..|+..+.... .+++|++||+||.|+.+..   ..+++.+.     +...+++++++||++|.|+++
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e  154 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL---DEKELIEKMNLSAIQDREICCYSISCKEKDNIDI  154 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             cccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhh---hHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHH
Confidence            99999999999998888775543 3679999999999996432   22333222     223457899999999999999


Q ss_pred             HHHHHHHHH
Q 028686          157 VFFSIARDI  165 (205)
Q Consensus       157 ~~~~i~~~~  165 (205)
                      +|+||++.+
T Consensus       155 ~~~~l~~~~  163 (164)
T d1zd9a1         155 TLQWLIQHS  163 (164)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHcc
Confidence            999998753

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.98  E-value=4.9e-31  Score=188.63  Aligned_cols=157  Identities=20%  Similarity=0.328  Sum_probs=125.1

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+++|++|||||||+++|.+..+ ..+.||.+...  ..+..++  +.+.+||++|++.++..+..+++.++++++|
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGFNI--KTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCC-SSCCCCSSEEE--EEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCC-CcccceEeeee--eeccccc--cceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            58999999999999999999998765 45667777433  3445554  7899999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHH-----HHhCCcEEEEcCCCCCCHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETSAKTNLNVEQ  156 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~-~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~  156 (205)
                      ||+++..++.....++..+.. ....+.|++||+||.|+.+.   ...++.....     ...+++++++||++|+|+++
T Consensus        77 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e  153 (165)
T d1ksha_          77 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA---LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLP  153 (165)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             eecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccc---cCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHH
Confidence            999999999988876665543 33467999999999999542   2233333321     12246799999999999999


Q ss_pred             HHHHHHHHHHH
Q 028686          157 VFFSIARDIKQ  167 (205)
Q Consensus       157 ~~~~i~~~~~~  167 (205)
                      +|+||++++..
T Consensus       154 ~~~~l~~~i~~  164 (165)
T d1ksha_         154 GIDWLLDDISS  164 (165)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHc
Confidence            99999998764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.97  E-value=1.5e-31  Score=193.15  Aligned_cols=155  Identities=20%  Similarity=0.320  Sum_probs=123.3

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      +.+||+++|++|||||||+++|.++++... .++.+  +....+...+  +.+.+||++|++.++..+..+++.+|++++
T Consensus        15 ~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~-~~~~~--~~~~~i~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~   89 (176)
T d1fzqa_          15 QEVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQG--FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILIY   89 (176)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCSCCEEE-EEETT--EEEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred             CEEEEEEECCCCCCHHHHHHHHhcCCCCcc-eeeee--eeEEEeccCC--eeEeEeeccccccchhHHHHHhhccceeEE
Confidence            458999999999999999999999887433 34444  3334455554  789999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHH-----HHHhCCcEEEEcCCCCCCHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQAL-----ADEYGIKFFETSAKTNLNVE  155 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~  155 (205)
                      |||++++.++.++..|+..+.... ..++|++|++||.|+.+..   ..+...+.     +....++++++||++|+|++
T Consensus        90 v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~  166 (176)
T d1fzqa_          90 VIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA---PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ  166 (176)
T ss_dssp             EEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             eeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccc---cHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCHH
Confidence            999999999999988887775543 3679999999999996532   22232222     22334689999999999999


Q ss_pred             HHHHHHHHH
Q 028686          156 QVFFSIARD  164 (205)
Q Consensus       156 ~~~~~i~~~  164 (205)
                      ++|+||++.
T Consensus       167 e~~~~l~~~  175 (176)
T d1fzqa_         167 DGMNWVCKN  175 (176)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhc
Confidence            999999875

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.97  E-value=1.7e-31  Score=194.00  Aligned_cols=160  Identities=21%  Similarity=0.314  Sum_probs=123.4

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      +.+||+++|++|||||||+++|.++.+. ...||.+....  .....+  +.+.+||++|++.+..++..++..++++++
T Consensus        16 k~~KI~lvG~~~vGKTsLi~~l~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~   90 (182)
T d1moza_          16 KELRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVE--TLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF   90 (182)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSEEE-EECSSTTCCEE--EEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCC-ccccccceEEE--EEeeCC--EEEEEEecccccccchhHHhhhccceeEEE
Confidence            3589999999999999999999887753 33455554333  334444  789999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHH-----HHHhCCcEEEEcCCCCCCHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQAL-----ADEYGIKFFETSAKTNLNVE  155 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~  155 (205)
                      |||++++.++..+..|+..+.... ..+.|++||+||+|+.+.   ...+++...     +...++++++|||++|+||+
T Consensus        91 v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv~  167 (182)
T d1moza_          91 VVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA---LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT  167 (182)
T ss_dssp             EEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC---CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             EeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccc---cCHHHHHHHHHHHHHhhCCCEEEEEECCCCCCHH
Confidence            999999999999988877665433 367999999999999542   333444332     23345789999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 028686          156 QVFFSIARDIKQRL  169 (205)
Q Consensus       156 ~~~~~i~~~~~~~~  169 (205)
                      ++|++|++.+.+++
T Consensus       168 e~~~~l~~~i~~~~  181 (182)
T d1moza_         168 EGLDWLIDVIKEEQ  181 (182)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcC
Confidence            99999999987753

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.97  E-value=4.5e-31  Score=190.31  Aligned_cols=156  Identities=19%  Similarity=0.352  Sum_probs=122.7

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ..+||+++|++|||||||+++|+++.+.. ..+|.+..+  .......  +.+.+||+||+..++..+..+++.++++++
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~   85 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNV--ETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   85 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTTCCCCEE-EEEETTEEE--EEEEETT--EEEEEEEESCCGGGHHHHGGGTTTCCEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCC-ccceeeeeE--EEeeccc--eeeEEecCCCcchhhhHHHhhhcccceEEE
Confidence            35899999999999999999999887543 334455333  2333333  789999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCCCccCHHHHHHH-----HHHhCCcEEEEcCCCCCCHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQAL-----ADEYGIKFFETSAKTNLNVE  155 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~  155 (205)
                      |||+++++++..+..|+..+... ...+.|+++++||+|+.+.   ....++...     +...++.++++||++|+||+
T Consensus        86 v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~  162 (173)
T d1e0sa_          86 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA---MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY  162 (173)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEecccchhHHHHHHHHHHHhhhcccccceeeeeeeccccccc---ccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHH
Confidence            99999999999998887776543 3467999999999999643   223333322     22335679999999999999


Q ss_pred             HHHHHHHHHH
Q 028686          156 QVFFSIARDI  165 (205)
Q Consensus       156 ~~~~~i~~~~  165 (205)
                      ++|+||.+.+
T Consensus       163 e~~~~l~~~~  172 (173)
T d1e0sa_         163 EGLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhc
Confidence            9999998753

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.96  E-value=5.2e-30  Score=181.71  Aligned_cols=154  Identities=16%  Similarity=0.242  Sum_probs=122.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   83 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   83 (205)
                      +||+++|++|||||||+++|.++++...+..+.....     ..+...+.+.+||++|...+...+..++..+++++++|
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEE-----EEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeEEE-----EEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            6899999999999999999999987665554443222     22335578999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHH-----HHHHHhCCcEEEEcCCCCCCHHHH
Q 028686           84 DVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQ-----ALADEYGIKFFETSAKTNLNVEQV  157 (205)
Q Consensus        84 d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~gi~~~  157 (205)
                      |..+++++..+..|+..+.... ....|+++++||.|+.+..   ...++.     .+++..+++++++||++|+||+++
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~  152 (160)
T d1r8sa_          76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEG  152 (160)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC---CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHH
T ss_pred             EecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccc---cHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHH
Confidence            9999999999988887776544 3668999999999986422   222222     233445688999999999999999


Q ss_pred             HHHHHHHH
Q 028686          158 FFSIARDI  165 (205)
Q Consensus       158 ~~~i~~~~  165 (205)
                      |++|.+++
T Consensus       153 ~~~l~~~l  160 (160)
T d1r8sa_         153 LDWLSNQL  160 (160)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhcC
Confidence            99998763

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.94  E-value=1.9e-26  Score=166.02  Aligned_cols=156  Identities=20%  Similarity=0.275  Sum_probs=116.5

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      +.+||+|+|.+|||||||+++|.++++... .++.+.  ........+  +.+.+||+++.+.....+..++..++++++
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~-~~~~~~--~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~   88 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGS--NVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV   88 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCEEE-ECCSCS--SCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCcc-ccccce--eEEEEeecc--eEEEEeccccccccccchhhhhccceeeee
Confidence            358999999999999999999999886533 233332  223333333  679999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHH-----HHhCCcEEEEcCCCCCCHH
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETSAKTNLNVE  155 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~  155 (205)
                      ++|.++.+++.....+........ ..+.|+++|+||.|++...   ..+++....     ...+++++++||++|+|++
T Consensus        89 v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~  165 (177)
T d1zj6a1          89 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM---TVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  165 (177)
T ss_dssp             EEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC---CHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             ecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccC---cHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHH
Confidence            999999999988877666554433 3679999999999986532   223333322     2334689999999999999


Q ss_pred             HHHHHHHHHH
Q 028686          156 QVFFSIARDI  165 (205)
Q Consensus       156 ~~~~~i~~~~  165 (205)
                      ++|++|.+++
T Consensus       166 e~~~~L~~~l  175 (177)
T d1zj6a1         166 QGLEWMMSRL  175 (177)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999875

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.94  E-value=5.6e-26  Score=161.84  Aligned_cols=160  Identities=22%  Similarity=0.379  Sum_probs=121.7

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+++|++|||||||+++|.++++... .++.+...  .....++  +.+.+||.+|...+...+...+...++++++
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~~~~~~~-~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNV--ETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYV   79 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSSEEE--EEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCcce-ecccceee--eeeccCc--eEEEEeeccccccccccchhhhhhhhhhhhh
Confidence            58999999999999999999999987643 34554322  3334444  6789999999999999999999999999999


Q ss_pred             EeCCChhHHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCCCc--cCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHH
Q 028686           83 YDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRA--VPTSKGQALADEYGIKFFETSAKTNLNVEQVFF  159 (205)
Q Consensus        83 ~d~~~~~s~~~~~~~~~~i~~-~~~~~~piiiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  159 (205)
                      +|+.+..++.....++..... ......|+++++||.|+.+....  +..+....++...+++++++||++|.||+++|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~  159 (169)
T d1upta_          80 VDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAME  159 (169)
T ss_dssp             EETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHH
T ss_pred             hhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHH
Confidence            999998888877775554433 33467899999999999653221  111111223344568999999999999999999


Q ss_pred             HHHHHHHH
Q 028686          160 SIARDIKQ  167 (205)
Q Consensus       160 ~i~~~~~~  167 (205)
                      +|++.+.+
T Consensus       160 ~l~~~l~~  167 (169)
T d1upta_         160 WLVETLKS  167 (169)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            99987754

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=2.1e-25  Score=157.98  Aligned_cols=151  Identities=19%  Similarity=0.294  Sum_probs=118.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEe
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   84 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   84 (205)
                      ||+++|++|||||||+++|.++++. .+.||.+....  ....  ..+...+||++|...+...+..++..++++++++|
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSE--ELAI--GNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCSCEEE--EECC--TTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC-eeeceeeEeEE--Eecc--CCeeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence            7999999999999999999999875 45666664443  2233  33678999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH------------HhCCcEEEEcCCCC
Q 028686           85 VTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD------------EYGIKFFETSAKTN  151 (205)
Q Consensus        85 ~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~Sa~~~  151 (205)
                      .++..++.....|+..+.... ..+.|++++++|.|+..   .....++.....            ..++.++++||++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg  153 (166)
T d2qtvb1          77 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN---AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMR  153 (166)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSS---CCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTT
T ss_pred             ccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccc---cCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCC
Confidence            999999988888777776544 36789999999999854   233343332221            22357999999999


Q ss_pred             CCHHHHHHHHHH
Q 028686          152 LNVEQVFFSIAR  163 (205)
Q Consensus       152 ~gi~~~~~~i~~  163 (205)
                      +|++|+|+||.+
T Consensus       154 ~Gv~e~~~~l~~  165 (166)
T d2qtvb1         154 NGYLEAFQWLSQ  165 (166)
T ss_dssp             BSHHHHHHHHTT
T ss_pred             CCHHHHHHHHhC
Confidence            999999999864

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=9.5e-26  Score=164.53  Aligned_cols=157  Identities=17%  Similarity=0.185  Sum_probs=116.5

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+++|+.|||||||+++|....++     |.+.  ....+...  .+.+.+||++|++.+..++..+++.++++++|
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~-----t~~~--~~~~~~~~--~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v   72 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEA-----GTGI--VETHFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFC   72 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSC-----CCSE--EEEEEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCC-----CccE--EEEEEEee--eeeeeeeccccccccccchhhcccCCceeeeE
Confidence            589999999999999999999887654     3332  22334444  47899999999999999999999999999999


Q ss_pred             EeCCChhHH-----------HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC--------------CCccCHHHHHH-HH
Q 028686           83 YDVTDESSF-----------NNIRNWIRNIEQHASDNVNKVLVGNKADMDES--------------KRAVPTSKGQA-LA  136 (205)
Q Consensus        83 ~d~~~~~s~-----------~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~--------------~~~~~~~~~~~-~~  136 (205)
                      ||+++.+++           +....|...+......+.|+++++||.|+...              .......+... +.
T Consensus        73 ~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (195)
T d1svsa1          73 VALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQ  152 (195)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHH
T ss_pred             EeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHH
Confidence            999988776           33344555565555577999999999995210              11122222222 11


Q ss_pred             HH----------hCCcEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 028686          137 DE----------YGIKFFETSAKTNLNVEQVFFSIARDIKQR  168 (205)
Q Consensus       137 ~~----------~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~  168 (205)
                      ..          ..+.++++||+++.||+++|+.+.+.+.++
T Consensus       153 ~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         153 CQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             HHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence            11          135688999999999999999999888765

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=2e-25  Score=163.43  Aligned_cols=161  Identities=19%  Similarity=0.127  Sum_probs=125.5

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   82 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   82 (205)
                      .+||+++|++|||||||+++|..+.+  .+.||.|.++..  +..  ..+.+.+||++|++.++..+..+++.+++++++
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~--~~~pTiG~~~~~--~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   75 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYP--FDL--QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFL   75 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTS--SCCCCCSCEEEE--EEC--SSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCC--CCCceeeEEEEE--Eec--cceeeeeccccccccccccccccccccceeeEe
Confidence            58999999999999999999998887  467999966543  333  447899999999999999999999999999999


Q ss_pred             EeCCChh-----------HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC---------------CccCHHHHHHHH
Q 028686           83 YDVTDES-----------SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK---------------RAVPTSKGQALA  136 (205)
Q Consensus        83 ~d~~~~~-----------s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~---------------~~~~~~~~~~~~  136 (205)
                      ||.++.+           .++....|...+......+.|+++++||.|+....               ..........+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  155 (200)
T d2bcjq2          76 VALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFI  155 (200)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHH
T ss_pred             eeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHH
Confidence            9988753           45667778888877766789999999999973211               112222333322


Q ss_pred             H----------HhCCcEEEEcCCCCCCHHHHHHHHHHHHHHHh
Q 028686          137 D----------EYGIKFFETSAKTNLNVEQVFFSIARDIKQRL  169 (205)
Q Consensus       137 ~----------~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  169 (205)
                      .          ...+.++++||++|.||+++|+.+.+.+.+.+
T Consensus       156 ~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~n  198 (200)
T d2bcjq2         156 LKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  198 (200)
T ss_dssp             HHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHHh
Confidence            1          11255789999999999999999999887654

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=9.2e-25  Score=157.59  Aligned_cols=153  Identities=16%  Similarity=0.097  Sum_probs=106.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCC-CcccceeeEEEEEEEEECCEEEEEEEEeCCChhh--------hhhhhhhhccC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTAYYRG   75 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~~   75 (205)
                      .|+|+|.+|||||||+|+|++.+... ...+....+.........+  ..+.+|||||...        +.......+.+
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~   84 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEALAD   84 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccccccchhccccccccccc
Confidence            59999999999999999999886421 2222222233333444554  5689999999643        22333455789


Q ss_pred             CcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC-CcEEEEcCCCCCCH
Q 028686           76 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNV  154 (205)
Q Consensus        76 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi  154 (205)
                      +|++++|+|++++.+..+ ..|.+.+... ..+.|+++|+||+|+...    ..+....+.+..+ ..++++||++|.|+
T Consensus        85 ad~il~v~D~~~~~~~~~-~~i~~~l~~~-~~~~piilv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~iSA~~~~gi  158 (178)
T d1wf3a1          85 VNAVVWVVDLRHPPTPED-ELVARALKPL-VGKVPILLVGNKLDAAKY----PEEAMKAYHELLPEAEPRMLSALDERQV  158 (178)
T ss_dssp             CSEEEEEEETTSCCCHHH-HHHHHHHGGG-TTTSCEEEEEECGGGCSS----HHHHHHHHHHTSTTSEEEECCTTCHHHH
T ss_pred             ccceeeeechhhhhcccc-cchhhheecc-ccchhhhhhhcccccccC----HHHHHHHHHhhcccCceEEEecCCCCCH
Confidence            999999999988644332 3344555443 356899999999998542    1233444555554 57899999999999


Q ss_pred             HHHHHHHHHHH
Q 028686          155 EQVFFSIARDI  165 (205)
Q Consensus       155 ~~~~~~i~~~~  165 (205)
                      ++++++|++.+
T Consensus       159 ~~L~~~i~~~l  169 (178)
T d1wf3a1         159 AELKADLLALM  169 (178)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHHhC
Confidence            99999998654

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=4.9e-25  Score=156.32  Aligned_cols=150  Identities=22%  Similarity=0.238  Sum_probs=110.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhh--------hhhhhhhcc
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF--------RTITTAYYR   74 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~~~~~~~~   74 (205)
                      +||+++|.+|||||||+|+|++.+.. ....+....+.....+...+  ..+.+||++|..+.        ......++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHHH
Confidence            79999999999999999999987743 23333333334444555655  56889999995422        122345578


Q ss_pred             CCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCH
Q 028686           75 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV  154 (205)
Q Consensus        75 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  154 (205)
                      .+|++++++|..+..+++....|.+.+.... .+.|+++|+||+|+.+......        +..+.+++++||++|.||
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~iilv~NK~Dl~~~~~~~~--------~~~~~~~~~iSAk~~~gi  150 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEIWPEFIARLP-AKLPITVVRNKADITGETLGMS--------EVNGHALIRLSARTGEGV  150 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHHSC-TTCCEEEEEECHHHHCCCCEEE--------EETTEEEEECCTTTCTTH
T ss_pred             hccccceeeccccccchhhhhhhhhhhhhcc-cccceeeccchhhhhhhHHHHH--------HhCCCcEEEEECCCCCCH
Confidence            8999999999999888777776666665544 5799999999999865332211        223478999999999999


Q ss_pred             HHHHHHHHHH
Q 028686          155 EQVFFSIARD  164 (205)
Q Consensus       155 ~~~~~~i~~~  164 (205)
                      ++++++|.+.
T Consensus       151 ~~L~~~l~~~  160 (161)
T d2gj8a1         151 DVLRNHLKQS  160 (161)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999999875

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=2.3e-24  Score=157.90  Aligned_cols=161  Identities=20%  Similarity=0.196  Sum_probs=112.3

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      +.+||+++|++|||||||+++|.   +...+.||.|...  ..+....  +.+.+||++|++.++..+..+++.++++++
T Consensus         1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~--~~~~~~~--~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~   73 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHE--YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILF   73 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEE--EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEE--EEEeeee--eeeeeecccceeeecccccccccccceeEE
Confidence            35899999999999999999994   4456788998544  3455544  779999999999999999999999999999


Q ss_pred             EEeCCChhH----------HHHHHHHHHHHH-hhcCCCCcEEEEEeCCCCCCC---------------CCccCHHHHHHH
Q 028686           82 VYDVTDESS----------FNNIRNWIRNIE-QHASDNVNKVLVGNKADMDES---------------KRAVPTSKGQAL  135 (205)
Q Consensus        82 v~d~~~~~s----------~~~~~~~~~~i~-~~~~~~~piiiv~nK~Dl~~~---------------~~~~~~~~~~~~  135 (205)
                      +||.++..+          ++....|+..+. .....++|+++++||.|+.+.               ...-..+.+.++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  153 (200)
T d1zcba2          74 LVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKF  153 (200)
T ss_dssp             EEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHH
T ss_pred             EEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHH
Confidence            999987543          344444445443 333468999999999997421               011122334333


Q ss_pred             HHH-----------hCCcEEEEcCCCCCCHHHHHHHHHHHHHHHh
Q 028686          136 ADE-----------YGIKFFETSAKTNLNVEQVFFSIARDIKQRL  169 (205)
Q Consensus       136 ~~~-----------~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  169 (205)
                      ...           ..+.++++||+++.+|+++|+.+.+.+.+.+
T Consensus       154 ~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~~  198 (200)
T d1zcba2         154 LVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDN  198 (200)
T ss_dssp             HHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHHh
Confidence            221           1256778999999999999999988876653

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.91  E-value=1.3e-23  Score=151.63  Aligned_cols=156  Identities=18%  Similarity=0.283  Sum_probs=112.7

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      +..||+++|++|||||||+++|.++.+... .++.+...  ..+.+++  ..+.+||+.+...+...+..+....+++++
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~-~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   86 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcce-ecccccce--eEEEecc--cccccccccchhhhhhHHhhhhcccceeee
Confidence            458999999999999999999999886543 34444222  3345555  567899999999988889999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHh-----------------CCcE
Q 028686           82 VYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-----------------GIKF  143 (205)
Q Consensus        82 v~d~~~~~s~~~~~~~~~~i~~-~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~  143 (205)
                      ++|.++...+.....++..... ....+.|+++++||.|++..   ....++.......                 ++++
T Consensus        87 ~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (186)
T d1f6ba_          87 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA---ISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  163 (186)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC---CCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             eeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCcccc---CCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEE
Confidence            9999999998887765544443 33467999999999998542   3344444333211                 2469


Q ss_pred             EEEcCCCCCCHHHHHHHHHHHH
Q 028686          144 FETSAKTNLNVEQVFFSIARDI  165 (205)
Q Consensus       144 ~~~Sa~~~~gi~~~~~~i~~~~  165 (205)
                      +++||++|+|++|+|+||.+.+
T Consensus       164 ~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         164 FMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             EECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEeCCCCCCHHHHHHHHHHhh
Confidence            9999999999999999998753

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=6.2e-24  Score=153.42  Aligned_cols=156  Identities=15%  Similarity=0.091  Sum_probs=103.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCc--ccceeeEEEEEEEEECCEEEEEEEEeCCChhh-------hhhhhhhhccC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTSF--ITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-------FRTITTAYYRG   75 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~   75 (205)
                      +|+++|.+|||||||+|+|++.......  ..+....+.  . ........+.+||+||...       ........+..
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~--~-~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~   79 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG--V-VEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIAR   79 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEE--E-EECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeec--e-eeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHh
Confidence            5899999999999999999887643222  222222222  1 1222234688999999432       11122345678


Q ss_pred             CcEEEEEEeCCCh--hHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCC
Q 028686           76 AMGILLVYDVTDE--SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN  153 (205)
Q Consensus        76 ~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  153 (205)
                      ++++++++|....  +++.....|+....... .+.|+++|+||+|+.+.   ...++..+.....+.+++++||++|.|
T Consensus        80 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~iiv~NK~D~~~~---~~~~~~~~~~~~~~~~~~~iSA~tg~g  155 (180)
T d1udxa2          80 TRVLLYVLDAADEPLKTLETLRKEVGAYDPAL-LRRPSLVALNKVDLLEE---EAVKALADALAREGLAVLPVSALTGAG  155 (180)
T ss_dssp             SSEEEEEEETTSCHHHHHHHHHHHHHHHCHHH-HHSCEEEEEECCTTSCH---HHHHHHHHHHHTTTSCEEECCTTTCTT
T ss_pred             hhhhhhhcccccccccchhhhhhhhhcccccc-chhhhhhhhhhhhhhhH---HHHHHHHHHHHhcCCeEEEEEcCCCCC
Confidence            9999999998653  33444444444332221 35799999999999542   123444555566678999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 028686          154 VEQVFFSIARDIKQ  167 (205)
Q Consensus       154 i~~~~~~i~~~~~~  167 (205)
                      ++++++.|.+.+..
T Consensus       156 id~L~~~i~~~l~~  169 (180)
T d1udxa2         156 LPALKEALHALVRS  169 (180)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999998887754

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.90  E-value=2.5e-23  Score=150.24  Aligned_cols=161  Identities=15%  Similarity=0.133  Sum_probs=106.3

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccce-----ee--EEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhc
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTI-----GI--DFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY   73 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~-----~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~   73 (205)
                      |+.++|+++|.+++|||||+|+|++.........+.     +.  ......+..++  ..+.++|++|+.++.......+
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~l   80 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA   80 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCC--ccccccccccccccccchhhhh
Confidence            567899999999999999999998754221111111     11  11112223344  5688999999999888888889


Q ss_pred             cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCcc-CHHHHHHHHHH----hCCcEEEEcC
Q 028686           74 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAV-PTSKGQALADE----YGIKFFETSA  148 (205)
Q Consensus        74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~-~~~~~~~~~~~----~~~~~~~~Sa  148 (205)
                      ..+|++++|+|+.+....... ..+..+..   .++|+++|+||+|+.+.+... ..+..+.+.+.    .+.+++++||
T Consensus        81 ~~~d~~ilv~d~~~g~~~~~~-~~~~~~~~---~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA  156 (179)
T d1wb1a4          81 DIIDLALIVVDAKEGPKTQTG-EHMLILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISA  156 (179)
T ss_dssp             TSCCEEEEEEETTTCSCHHHH-HHHHHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCT
T ss_pred             hhccccccccccccccchhhh-hhhhhhhh---cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc
Confidence            999999999999875432222 22222322   469999999999986532111 11112222222    1368999999


Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q 028686          149 KTNLNVEQVFFSIARDIKQ  167 (205)
Q Consensus       149 ~~~~gi~~~~~~i~~~~~~  167 (205)
                      ++|+|++++++.|.+.+.+
T Consensus       157 ~~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         157 KTGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             TTCTTHHHHHHHHHHHHHH
T ss_pred             cCCcCHHHHHHHHHhcCCc
Confidence            9999999999999887765

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=9.2e-23  Score=146.01  Aligned_cols=158  Identities=20%  Similarity=0.188  Sum_probs=100.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCC-CcccceeeEEEEEEEEECCEEEEEEEEeCCChhh---------hhhhhhhhcc
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---------FRTITTAYYR   74 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~~   74 (205)
                      .|+|+|.+|||||||+++|++..... ...+..........+....  ..+.+||++|...         +......++.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   79 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccc--cccccccccceeeeeccccccccccccccccc
Confidence            58999999999999999999866431 1122111112222333333  5689999998421         2233445567


Q ss_pred             CCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCH
Q 028686           75 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV  154 (205)
Q Consensus        75 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  154 (205)
                      .+|+++++.|.+....... ..++..+...   ++|+++|+||+|+.+.   ...+...++.+.....++++||++|.|+
T Consensus        80 ~ad~i~~~~~~~~~~~~~~-~~~~~~l~~~---~~pviiv~NK~Dl~~~---~~~~~~~~~~~~~~~~~i~iSAk~g~gi  152 (171)
T d1mkya1          80 EADLVLFVVDGKRGITKED-ESLADFLRKS---TVDTILVANKAENLRE---FEREVKPELYSLGFGEPIPVSAEHNINL  152 (171)
T ss_dssp             TCSEEEEEEETTTCCCHHH-HHHHHHHHHH---TCCEEEEEESCCSHHH---HHHHTHHHHGGGSSCSCEECBTTTTBSH
T ss_pred             cCcEEEEeecccccccccc-cccccccccc---cccccccchhhhhhhh---hhhHHHHHHHhcCCCCeEEEecCCCCCH
Confidence            8999999999877544332 3345555543   5899999999998531   1122222333333357799999999999


Q ss_pred             HHHHHHHHHHHHHHhcc
Q 028686          155 EQVFFSIARDIKQRLAD  171 (205)
Q Consensus       155 ~~~~~~i~~~~~~~~~~  171 (205)
                      ++++++|.+.+.+...+
T Consensus       153 d~L~~~i~~~l~e~~~~  169 (171)
T d1mkya1         153 DTMLETIIKKLEEKGLD  169 (171)
T ss_dssp             HHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhCCCCCCC
Confidence            99999999988776554

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.88  E-value=1.6e-22  Score=146.18  Aligned_cols=150  Identities=20%  Similarity=0.197  Sum_probs=97.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChh-----------h----hhhhh
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE-----------R----FRTIT   69 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----------~----~~~~~   69 (205)
                      .|+++|.+|||||||+|+|++.+......|..+.+.  ..+...+    +.+||+||..           .    +....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~--~~~~~~~----~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWKN----HKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEETT----EEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeecc--ccccccc----ceecccCCceeccccccccccccchhhhhhh
Confidence            589999999999999999998876544444222221  2233333    5789999941           1    11223


Q ss_pred             hhhccCCcEEEEEEeCCChhHHHHHH----------HHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHh
Q 028686           70 TAYYRGAMGILLVYDVTDESSFNNIR----------NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY  139 (205)
Q Consensus        70 ~~~~~~~d~~i~v~d~~~~~s~~~~~----------~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~  139 (205)
                      ...++.+|++++|+|...........          .+++.+..   .+.|+++|+||+|+....    .+....+....
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~---~~~p~iiv~NK~D~~~~~----~~~~~~~~~~~  148 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKNV----QEVINFLAEKF  148 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSCH----HHHHHHHHHHH
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH---cCCCEEEEEeeeehhhhH----HHHHHHHHHHh
Confidence            34467899999999987643322211          12233322   468999999999975421    12222222222


Q ss_pred             C-------CcEEEEcCCCCCCHHHHHHHHHHHHHH
Q 028686          140 G-------IKFFETSAKTNLNVEQVFFSIARDIKQ  167 (205)
Q Consensus       140 ~-------~~~~~~Sa~~~~gi~~~~~~i~~~~~~  167 (205)
                      .       ..++++||++|.|+++++++|.+.+.+
T Consensus       149 ~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         149 EVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             TCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence            2       358899999999999999999988765

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=2.6e-22  Score=141.95  Aligned_cols=149  Identities=24%  Similarity=0.201  Sum_probs=100.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh--------h-hhhhhhhc
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------F-RTITTAYY   73 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~-~~~~~~~~   73 (205)
                      +||+++|.+|||||||+|+|++.+.. ....+..........+...+  ..+.+||+||...        . .......+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            69999999999999999999987632 22222222223334455555  5688999999421        1 01122235


Q ss_pred             cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCC
Q 028686           74 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN  153 (205)
Q Consensus        74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  153 (205)
                      ..+|++++|+|.+++.......-+ ..+     ...++++++||.|+.+.   ...+++.... ..+.+++++||++|.|
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~~-~~~-----~~~~~i~~~~k~d~~~~---~~~~~~~~~~-~~~~~~~~vSA~~g~g  148 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKIL-ERI-----KNKRYLVVINKVDVVEK---INEEEIKNKL-GTDRHMVKISALKGEG  148 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHHH-HHH-----TTSSEEEEEEECSSCCC---CCHHHHHHHH-TCSTTEEEEEGGGTCC
T ss_pred             HhCCEEEEEEeCCCCcchhhhhhh-hhc-----ccccceeeeeeccccch---hhhHHHHHHh-CCCCcEEEEECCCCCC
Confidence            789999999999987665443222 111     34789999999998652   2333333222 2347899999999999


Q ss_pred             HHHHHHHHHHH
Q 028686          154 VEQVFFSIARD  164 (205)
Q Consensus       154 i~~~~~~i~~~  164 (205)
                      |++++++|.+.
T Consensus       149 i~~L~~~I~ke  159 (160)
T d1xzpa2         149 LEKLEESIYRE  159 (160)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99999998763

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=1.2e-21  Score=141.81  Aligned_cols=159  Identities=21%  Similarity=0.115  Sum_probs=103.7

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh------------hhhhh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER------------FRTIT   69 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~------------~~~~~   69 (205)
                      .+||+++|.+|||||||+|+|++.... ....+..........+.+++  ..+.++|+||...            .....
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKYSNYRV   85 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--EEEEESSCSCC-----------CCSCCHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCC--ceeeeeccCCccccccccccccccchhHHH
Confidence            489999999999999999999987632 12222222223333455666  4578889998642            12233


Q ss_pred             hhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHH----h-CCcEE
Q 028686           70 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADE----Y-GIKFF  144 (205)
Q Consensus        70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~----~-~~~~~  144 (205)
                      ...++.+|++++|+|++.... +....+...+..   .+.|+++|+||+|+..... ....+..+...+    . ..+++
T Consensus        86 ~~~~~~~dvii~v~d~~~~~~-~~~~~~~~~~~~---~~~~~i~v~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~  160 (186)
T d1mkya2          86 VDSIEKADVVVIVLDATQGIT-RQDQRMAGLMER---RGRASVVVFNKWDLVVHRE-KRYDEFTKLFREKLYFIDYSPLI  160 (186)
T ss_dssp             HHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSTTGG-GCHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHhcCCEEEEeecccccch-hhHHHHHHHHHH---cCCceeeeccchhhhcchh-hhhhhHHHHHHHHhcccCCCeEE
Confidence            445678999999999986433 222333344433   4589999999999865332 233333333222    1 26899


Q ss_pred             EEcCCCCCCHHHHHHHHHHHHHHH
Q 028686          145 ETSAKTNLNVEQVFFSIARDIKQR  168 (205)
Q Consensus       145 ~~Sa~~~~gi~~~~~~i~~~~~~~  168 (205)
                      ++||++|.|+++++++|.+.+..+
T Consensus       161 ~vSa~~g~gv~~L~~~i~~~~~~~  184 (186)
T d1mkya2         161 FTSADKGWNIDRMIDAMNLAYASY  184 (186)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHhC
Confidence            999999999999999998887765

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=2.9e-21  Score=142.18  Aligned_cols=116  Identities=16%  Similarity=0.300  Sum_probs=87.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh-hhhhhhccCCcEEEEEE
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-TITTAYYRGAMGILLVY   83 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~d~~i~v~   83 (205)
                      +|+++|++|||||||+++|.++.+... .++.+.++....+. ++..+.+.+||++|++.++ ..+..++..++++++|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~-~~t~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKVN-NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCB-CCCCSCEEEEEECS-STTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcc-cCCeeEEEEEEEEe-eeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            689999999999999999999887654 45666555443332 3455789999999999875 56788889999999999


Q ss_pred             eCCChhHH-HHHHHHHHH-HHhh--cCCCCcEEEEEeCCCCCC
Q 028686           84 DVTDESSF-NNIRNWIRN-IEQH--ASDNVNKVLVGNKADMDE  122 (205)
Q Consensus        84 d~~~~~s~-~~~~~~~~~-i~~~--~~~~~piiiv~nK~Dl~~  122 (205)
                      |+++..++ .....|+.. +...  ...++|++|++||+|+++
T Consensus        80 D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~  122 (207)
T d2fh5b1          80 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM  122 (207)
T ss_dssp             ETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred             EcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCC
Confidence            99997664 444444433 3322  235689999999999975

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.87  E-value=3e-22  Score=149.70  Aligned_cols=162  Identities=17%  Similarity=0.099  Sum_probs=103.7

Q ss_pred             EEEECCCCCcHHHHHHHHHhCCCCCCccccee--eEEEEEE--------------EEECCEEEEEEEEeCCChhhhhhhh
Q 028686            6 RIYFERGGVGKSCLLLRFSDGSFTTSFITTIG--IDFKIRT--------------IELDGKRIKLQIWDTAGQERFRTIT   69 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~--~~~~~~~--------------~~~~~~~~~~~i~D~~g~~~~~~~~   69 (205)
                      |+|+|.+++|||||+++|++............  .......              ..+......+.++||||+.+|....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            99999999999999999987532111111110  0011110              0112223468899999999988877


Q ss_pred             hhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHH-------------------
Q 028686           70 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS-------------------  130 (205)
Q Consensus        70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~-------------------  130 (205)
                      ...+..+|++|+|+|+.+.-.-.. ...+..+..   .++|+++++||+|+.+.......+                   
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~---~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  163 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKPQT-QEALNILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDT  163 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHH
T ss_pred             hhcccccceEEEEEecccCcccch-hHHHHHhhc---CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHHH
Confidence            788899999999999987322111 222333333   468999999999987643221110                   


Q ss_pred             HHHHHHHH---h---------------CCcEEEEcCCCCCCHHHHHHHHHHHHHHHhcc
Q 028686          131 KGQALADE---Y---------------GIKFFETSAKTNLNVEQVFFSIARDIKQRLAD  171 (205)
Q Consensus       131 ~~~~~~~~---~---------------~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~~  171 (205)
                      ...+....   .               .++++.+||++|.|++++++.+.....+..++
T Consensus       164 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~~~~  222 (227)
T d1g7sa4         164 KVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLRE  222 (227)
T ss_dssp             HHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSG
T ss_pred             HHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            01111110   0               14689999999999999999999888776654

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.87  E-value=1.3e-22  Score=151.14  Aligned_cols=160  Identities=16%  Similarity=0.139  Sum_probs=115.2

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   81 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   81 (205)
                      ...||+++|++|||||||+++|..+.+    .||.|..  ...+.+++  +.+.+||++|+..++..|..++.+++++++
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~--~~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~   76 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIF--ETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIF   76 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCE--EEEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEEE
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCeE--EEEEEECc--EEEEEEecCccceeccchhhhcccccceEE
Confidence            357999999999999999999987654    5788844  34456665  789999999999999999999999999999


Q ss_pred             EEeCCChh----------HHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC-------------------------
Q 028686           82 VYDVTDES----------SFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDESKR-------------------------  125 (205)
Q Consensus        82 v~d~~~~~----------s~~~~-~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~-------------------------  125 (205)
                      |+|.++.+          .+.+. ..|...+......++|++|++||+|+.+...                         
T Consensus        77 v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~  156 (221)
T d1azta2          77 VVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATP  156 (221)
T ss_dssp             EEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCC
T ss_pred             EEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccc
Confidence            99998643          22333 3344444444446799999999999743100                         


Q ss_pred             ----ccCHHHHHHHH-----HHh--------CCcEEEEcCCCCCCHHHHHHHHHHHHHHHh
Q 028686          126 ----AVPTSKGQALA-----DEY--------GIKFFETSAKTNLNVEQVFFSIARDIKQRL  169 (205)
Q Consensus       126 ----~~~~~~~~~~~-----~~~--------~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  169 (205)
                          .....++..+.     ...        .+..+++||.++.+|+.+|+.+.+.+.+.+
T Consensus       157 ~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~~  217 (221)
T d1azta2         157 EPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMH  217 (221)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             cCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHHH
Confidence                00122232221     111        134568999999999999999888777653

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.84  E-value=1.3e-21  Score=141.62  Aligned_cols=155  Identities=19%  Similarity=0.141  Sum_probs=95.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEE-CCEEEEEEEEeCCChhhhh----hhh---hhhccCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFR----TIT---TAYYRGA   76 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~----~~~---~~~~~~~   76 (205)
                      +|+|+|.+|||||||+|+|.+........+..+.........+ ++  ..+.+|||||..+..    .+.   ...+..+
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG--RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT   80 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS--CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCC--cEEEEecCCCcccCchHHHHHHHHHHHHHHHh
Confidence            6899999999999999999887643222222111122222222 33  247899999964321    111   1224568


Q ss_pred             cEEEEEEeCCChhHHHHHH--HHHHHHHh---hcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHh--CCcEEEEcCC
Q 028686           77 MGILLVYDVTDESSFNNIR--NWIRNIEQ---HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY--GIKFFETSAK  149 (205)
Q Consensus        77 d~~i~v~d~~~~~s~~~~~--~~~~~i~~---~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~  149 (205)
                      +.++++++....+......  .+......   ....+.|+++|+||+|+.+.     .+..+.+.+..  +.+++.+||+
T Consensus        81 ~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~-----~~~~~~~~~~~~~~~~v~~iSA~  155 (185)
T d1lnza2          81 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA-----AENLEAFKEKLTDDYPVFPISAV  155 (185)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH-----HHHHHHHHHHCCSCCCBCCCSSC
T ss_pred             hhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhH-----HHHHHHHHHHhccCCcEEEEECC
Confidence            8888888766543222211  11111111   22246899999999998642     23334444443  5789999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 028686          150 TNLNVEQVFFSIARDIK  166 (205)
Q Consensus       150 ~~~gi~~~~~~i~~~~~  166 (205)
                      +|.|+++++++|.+.+.
T Consensus       156 ~g~Gi~~L~~~i~~~L~  172 (185)
T d1lnza2         156 TREGLRELLFEVANQLE  172 (185)
T ss_dssp             CSSTTHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHhhh
Confidence            99999999999988764

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.83  E-value=1.2e-19  Score=132.25  Aligned_cols=161  Identities=17%  Similarity=0.108  Sum_probs=104.4

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCC---cc--cceeeEEEEEEEEE-------------------CCEEEEEEEEe
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTS---FI--TTIGIDFKIRTIEL-------------------DGKRIKLQIWD   58 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~---~~--~t~~~~~~~~~~~~-------------------~~~~~~~~i~D   58 (205)
                      .++|+++|..++|||||+++|.+......   ..  -|....+......-                   ......+.++|
T Consensus         5 ~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD   84 (195)
T d1kk1a3           5 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFID   84 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEE
T ss_pred             cEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeeec
Confidence            48999999999999999999987532111   11  11111122111111                   11235689999


Q ss_pred             CCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCc-cCHHHHHHHHH
Q 028686           59 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA-VPTSKGQALAD  137 (205)
Q Consensus        59 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~-~~~~~~~~~~~  137 (205)
                      +||+.+|......-+..+|++++|+|+.+..........+..+....  ..+++++.||+|+.+.... ...+.+.++..
T Consensus        85 tPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~--~~~iiv~inK~D~~d~~~~~~~~~~~~~~~~  162 (195)
T d1kk1a3          85 APGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKIELVDKEKALENYRQIKEFIE  162 (195)
T ss_dssp             CSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred             cchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhc--CccceeeeecccchhhHHHHHHHHHHHHHhc
Confidence            99999999888888889999999999987532222333333343332  2457888999998652111 11233344444


Q ss_pred             HhC---CcEEEEcCCCCCCHHHHHHHHHHHH
Q 028686          138 EYG---IKFFETSAKTNLNVEQVFFSIARDI  165 (205)
Q Consensus       138 ~~~---~~~~~~Sa~~~~gi~~~~~~i~~~~  165 (205)
                      ..+   ++++++||++|+|+++|++.+.+.+
T Consensus       163 ~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         163 GTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             TSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             cccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            332   6899999999999999999887643

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.82  E-value=2.2e-19  Score=130.79  Aligned_cols=153  Identities=12%  Similarity=0.078  Sum_probs=89.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChh----------h---hhhhhh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----------R---FRTITT   70 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~---~~~~~~   70 (205)
                      .+|+|+|.+|||||||+|+|++.+......+..+.+..........   .+.+.|++|..          .   ......
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  100 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIETYI  100 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhhhHHhhhh
Confidence            3899999999999999999998653222111111111111122221   23445665521          1   112223


Q ss_pred             hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHH----hCCcEEEE
Q 028686           71 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADE----YGIKFFET  146 (205)
Q Consensus        71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~  146 (205)
                      ..+..++++++|+|++.+..- ....+++.+..   .++|+++|+||+|+.+. . ...+..+.+.+.    .+.+++.+
T Consensus       101 ~~~~~~~~vi~viD~~~~~~~-~~~~~~~~l~~---~~~piivv~NK~D~~~~-~-~~~~~~~~~~~~l~~~~~~~~~~~  174 (195)
T d1svia_         101 TTREELKAVVQIVDLRHAPSN-DDVQMYEFLKY---YGIPVIVIATKADKIPK-G-KWDKHAKVVRQTLNIDPEDELILF  174 (195)
T ss_dssp             HHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHH---TTCCEEEEEECGGGSCG-G-GHHHHHHHHHHHHTCCTTSEEEEC
T ss_pred             ccccchhhhhhhhhccccccc-ccccccccccc---ccCcceechhhccccCH-H-HHHHHHHHHHHHhcccCCCCEEEE
Confidence            345568999999999764321 12234444544   35899999999998542 1 112233333333    33679999


Q ss_pred             cCCCCCCHHHHHHHHHHHH
Q 028686          147 SAKTNLNVEQVFFSIARDI  165 (205)
Q Consensus       147 Sa~~~~gi~~~~~~i~~~~  165 (205)
                      ||++|.|+++++++|.+.+
T Consensus       175 SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         175 SSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             CTTTCTTHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHh
Confidence            9999999999999998876

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.80  E-value=1e-18  Score=128.30  Aligned_cols=159  Identities=14%  Similarity=0.106  Sum_probs=98.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCC-----CcccceeeEEEEEEEEE------------------------CCEEEEE
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTT-----SFITTIGIDFKIRTIEL------------------------DGKRIKL   54 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~-----~~~~t~~~~~~~~~~~~------------------------~~~~~~~   54 (205)
                      ++|+++|..++|||||+++|++.....     ....+.........+..                        ......+
T Consensus         9 ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~   88 (205)
T d2qn6a3           9 VNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRI   88 (205)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEE
T ss_pred             eEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccceEEE
Confidence            899999999999999999998642110     00000000111111111                        0112468


Q ss_pred             EEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCcc-CHHHHH
Q 028686           55 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAV-PTSKGQ  133 (205)
Q Consensus        55 ~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~-~~~~~~  133 (205)
                      .++|+||+.+|.......+..+|++|+|+|+.+.-.-...+..+..+...  .-.|++|+.||+|+.+..... ...+..
T Consensus        89 ~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~--~i~~iIV~vNK~Dl~~~~~~~~~~~~~~  166 (205)
T d2qn6a3          89 SFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII--GVKNLIIVQNKVDVVSKEEALSQYRQIK  166 (205)
T ss_dssp             EEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT--TCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred             EEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc--CCceeeeccccCCCccchHHHHHHHHHH
Confidence            99999999999887777888999999999998742111222222333222  124888899999996532111 111222


Q ss_pred             HHHHHh---CCcEEEEcCCCCCCHHHHHHHHHHH
Q 028686          134 ALADEY---GIKFFETSAKTNLNVEQVFFSIARD  164 (205)
Q Consensus       134 ~~~~~~---~~~~~~~Sa~~~~gi~~~~~~i~~~  164 (205)
                      .+....   +++++++||++|.||+++++.+...
T Consensus       167 ~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~  200 (205)
T d2qn6a3         167 QFTKGTWAENVPIIPVSALHKINIDSLIEGIEEY  200 (205)
T ss_dssp             HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HHhccccCCCCeEEEEeCCCCCChHHHHHHHHhh
Confidence            222222   3789999999999999999987764

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.80  E-value=2e-19  Score=130.95  Aligned_cols=155  Identities=15%  Similarity=0.072  Sum_probs=103.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC----------------CCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG----------------SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT   67 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~----------------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~   67 (205)
                      ++|+++|..++|||||+++|++.                ....+....+..+.....+...+  ..+.++|+||+.+|..
T Consensus         4 ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~--~~~~~iDtPGh~~f~~   81 (196)
T d1d2ea3           4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA--RHYAHTDCPGHADYVK   81 (196)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSS--CEEEEEECSSHHHHHH
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEece--eeEEeecCcchHHHHH
Confidence            89999999999999999999752                11122223333333333333444  5688999999999988


Q ss_pred             hhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCc--cCHHHHHHHHHHhC-----
Q 028686           68 ITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA--VPTSKGQALADEYG-----  140 (205)
Q Consensus        68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~-----  140 (205)
                      .....+..+|++++|+|+.+.-. ++....+..+...  ...|+|+++||+|+.+.+..  ....+++.+....+     
T Consensus        82 ~~~~~~~~aD~allVVda~~G~~-~QT~~~~~~a~~~--~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~  158 (196)
T d1d2ea3          82 NMITGTAPLDGCILVVAANDGPM-PQTREHLLLARQI--GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE  158 (196)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSC-HHHHHHHHHHHHT--TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred             HHHHHHhhcCeEEEEEEcCCCCc-hhHHHHHHHHHHh--cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCccc
Confidence            88888899999999999987422 2233333444333  22578889999998642211  12234445554443     


Q ss_pred             CcEEEEcCCCC----------CCHHHHHHHHHH
Q 028686          141 IKFFETSAKTN----------LNVEQVFFSIAR  163 (205)
Q Consensus       141 ~~~~~~Sa~~~----------~gi~~~~~~i~~  163 (205)
                      ++++.+|+++|          +++.++++.+.+
T Consensus       159 ~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~  191 (196)
T d1d2ea3         159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDT  191 (196)
T ss_dssp             SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHH
T ss_pred             CEEEEEEccccccccCcccccCCHHHHHHHHHh
Confidence            67999999987          477777776644

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=4.7e-18  Score=121.75  Aligned_cols=153  Identities=18%  Similarity=0.147  Sum_probs=95.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhh---------hhhhhhhcc
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF---------RTITTAYYR   74 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~~   74 (205)
                      .|+|+|.+|||||||+|+|++.+.. ....++............+.  ..+..||++|....         .........
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASSSIG   84 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTSCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCC--ceeEeecCCCceecchhhhhhhhhhccccchh
Confidence            4899999999999999999987643 12222222222223333344  34567888874321         112222344


Q ss_pred             CCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC-CcEEEEcCCCCCC
Q 028686           75 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLN  153 (205)
Q Consensus        75 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g  153 (205)
                      .+++++++.|..+...  ....+...+..   ...|+++++||.|.... ......+.+.+....+ .+++++||++|.|
T Consensus        85 ~~~~~l~~~d~~~~~~--~~~~~~~~l~~---~~~~~i~v~~k~d~~~~-~~~~~~~~~~~~~~~~~~~~~~vSA~~g~g  158 (179)
T d1egaa1          85 DVELVIFVVEGTRWTP--DDEMVLNKLRE---GKAPVILAVNKVDNVQE-KADLLPHLQFLASQMNFLDIVPISAETGLN  158 (179)
T ss_dssp             CEEEEEEEEETTCCCH--HHHHHHHHHHS---SSSCEEEEEESTTTCCC-HHHHHHHHHHHHTTSCCSEEEECCTTTTTT
T ss_pred             hcceeEEEEecCccch--hHHHHHHHhhh---ccCceeeeeeeeeccch-hhhhhhHhhhhhhhcCCCCEEEEeCcCCCC
Confidence            6778888888776332  22222333332   45789999999997653 2223344455555566 6899999999999


Q ss_pred             HHHHHHHHHHHH
Q 028686          154 VEQVFFSIARDI  165 (205)
Q Consensus       154 i~~~~~~i~~~~  165 (205)
                      +++++++|.+.+
T Consensus       159 i~~L~~~i~~~l  170 (179)
T d1egaa1         159 VDTIAAIVRKHL  170 (179)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhC
Confidence            999999987754

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.74  E-value=1.9e-18  Score=126.59  Aligned_cols=141  Identities=18%  Similarity=0.094  Sum_probs=91.7

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhC--------CCC---------CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDG--------SFT---------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF   65 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~--------~~~---------~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   65 (205)
                      .|+|+++|.+++|||||+++|+..        ...         ++..+.+.++.....+.+++  ..+.++||||+.+|
T Consensus         3 ~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~--~~i~iiDtPGh~df   80 (204)
T d2c78a3           3 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGHADY   80 (204)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCSGGG
T ss_pred             CeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCC--eEEEEEeCCCchhh
Confidence            489999999999999999999642        000         01111223334444555555  56788999999999


Q ss_pred             hhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCCc--cCHHHHHHHHHHhC--
Q 028686           66 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKRA--VPTSKGQALADEYG--  140 (205)
Q Consensus        66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--  140 (205)
                      .......+..+|++|+|+|+.+.-... ....+..+..   .++| ++|++||+|+.+....  ...++++.+....+  
T Consensus        81 ~~~~~~~~~~aD~avlVvda~~Gv~~q-t~~~~~~~~~---~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~  156 (204)
T d2c78a3          81 IKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP  156 (204)
T ss_dssp             HHHHHHHHTTCSSEEEEEETTTCCCHH-HHHHHHHHHH---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCC
Confidence            988888889999999999998754332 2223333333   3566 6778999998652211  11233444444433  


Q ss_pred             ---CcEEEEcCC
Q 028686          141 ---IKFFETSAK  149 (205)
Q Consensus       141 ---~~~~~~Sa~  149 (205)
                         ++++..|+.
T Consensus       157 ~~~i~~i~~sa~  168 (204)
T d2c78a3         157 GDEVPVIRGSAL  168 (204)
T ss_dssp             TTTSCEEECCHH
T ss_pred             cccceeeeeech
Confidence               567888765

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=3.8e-18  Score=125.09  Aligned_cols=115  Identities=15%  Similarity=0.216  Sum_probs=79.8

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhh----ccCCcE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY----YRGAMG   78 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~----~~~~d~   78 (205)
                      .-+|+|+|++|||||||+|+|.++++.+.    ++.+.....+..+  ...+.+||+||+..+...+..+    ...++.
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~~~~----tt~~~~~~~~~~~--~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~   76 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSVRPT----VVSQEPLSAADYD--GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKG   76 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCCCB----CCCSSCEEETTGG--GSSCEEEECCCCGGGTHHHHHHHHHHGGGEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCe----EEecceEEEEEeC--CeEEEEEecccccchhhHHHHHHHHHhhhccc
Confidence            35799999999999999999999876433    2212222223333  3568899999998766555444    345688


Q ss_pred             EEEEEeCCC-hhHHHHHHHHHH----HHHhhcCCCCcEEEEEeCCCCCCC
Q 028686           79 ILLVYDVTD-ESSFNNIRNWIR----NIEQHASDNVNKVLVGNKADMDES  123 (205)
Q Consensus        79 ~i~v~d~~~-~~s~~~~~~~~~----~i~~~~~~~~piiiv~nK~Dl~~~  123 (205)
                      +++++|..+ ..+++.+..|+.    .+......++|+++|+||+|+.+.
T Consensus        77 ~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          77 LIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             EEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             cceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence            888888664 556666555543    334445578999999999999653

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.70  E-value=2e-16  Score=116.93  Aligned_cols=147  Identities=20%  Similarity=0.129  Sum_probs=93.6

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCC--CCC-------------------------------CcccceeeEEEEEEEEECC
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGS--FTT-------------------------------SFITTIGIDFKIRTIELDG   49 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~--~~~-------------------------------~~~~t~~~~~~~~~~~~~~   49 (205)
                      .+||+++|..++|||||+.+|+...  +..                               +.....+.+.....+...+
T Consensus         9 ~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~   88 (222)
T d1zunb3           9 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAK   88 (222)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSS
T ss_pred             cceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEeccc
Confidence            5899999999999999999996421  100                               0111112222223333344


Q ss_pred             EEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCCccC
Q 028686           50 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKRAVP  128 (205)
Q Consensus        50 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~Dl~~~~~~~~  128 (205)
                        ..+.++|+||+.+|......-...+|++++|+|+.+.-. .+....+..+..   .+++ ++++.||+|+.+.+....
T Consensus        89 --~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~-~Qt~e~~~~~~~---~gv~~iiv~vNK~D~~~~~~~~~  162 (222)
T d1zunb3          89 --RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASL---LGIKHIVVAINKMDLNGFDERVF  162 (222)
T ss_dssp             --EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHH---TTCCEEEEEEECTTTTTSCHHHH
T ss_pred             --eEEEEEeccchhhhhhhhccccccCceEEEEeccccCcc-cchHHHHHHHHH---cCCCEEEEEEEccccccccceeh
Confidence              458899999999999888888889999999999987321 111111222222   3555 778899999976333222


Q ss_pred             H---HHHHHHHHHhC-----CcEEEEcCCCCCCHH
Q 028686          129 T---SKGQALADEYG-----IKFFETSAKTNLNVE  155 (205)
Q Consensus       129 ~---~~~~~~~~~~~-----~~~~~~Sa~~~~gi~  155 (205)
                      .   +++..+....+     ++++++||++|.|+.
T Consensus       163 ~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         163 ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             hhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence            2   23344454443     468899999999884

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.68  E-value=5.7e-16  Score=117.50  Aligned_cols=115  Identities=18%  Similarity=0.113  Sum_probs=79.6

Q ss_pred             cce-EEEEECCCCCcHHHHHHHHHhCC--CCC----------------CcccceeeEEEEEEEEECCEEEEEEEEeCCCh
Q 028686            2 LFL-LRIYFERGGVGKSCLLLRFSDGS--FTT----------------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   62 (205)
Q Consensus         2 ~~i-~i~v~G~~~~GKtsli~~l~~~~--~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~   62 (205)
                      ..+ +|+++|..++|||||+.+|+...  ...                +......+......+.+++  .++.++||||+
T Consensus         4 ~~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~--~~~n~iDtPG~   81 (276)
T d2bv3a2           4 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDAPGH   81 (276)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETT--EEEEEECCCSS
T ss_pred             hhceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCC--eEEEEecCCch
Confidence            345 69999999999999999996421  110                1111111222233445555  56899999999


Q ss_pred             hhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686           63 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  122 (205)
Q Consensus        63 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~  122 (205)
                      .+|.......++.+|++|+|+|..+.-..... ..++....   .++|.++++||+|...
T Consensus        82 ~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~-~~w~~a~~---~~lP~i~fINKmDr~~  137 (276)
T d2bv3a2          82 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSE-TVWRQAEK---YKVPRIAFANKMDKTG  137 (276)
T ss_dssp             SSCSTTHHHHHHHCCEEEEEEETTTSSCHHHH-HHHHHHHT---TTCCEEEEEECTTSTT
T ss_pred             hhhHHHHHHHHHhhhheEEeccccCCcchhHH-HHHHHHHH---cCCCEEEEEecccccc
Confidence            99998888899999999999999885333222 23344433   4699999999999644

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=3.2e-16  Score=112.44  Aligned_cols=156  Identities=12%  Similarity=0.034  Sum_probs=79.8

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcc--cceeeEEEEEEEEECCEEEEEEEEeCCChh-------hhhhh---hh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFI--TTIGIDFKIRTIELDGKRIKLQIWDTAGQE-------RFRTI---TT   70 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~-------~~~~~---~~   70 (205)
                      .++|+++|.+|||||||+|+|.+.+......  ++...... ......+ ...+..++.++..       .....   ..
T Consensus        16 ~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLIN-LFEVADG-KRLVDLPGYGYAEVPEEMKRKWQRALGEYL   93 (188)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC-------------CCEE-EEEEETT-EEEEECCCCC------CCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeecc-ceecccc-cceeeeecccccchhhhhhhhhhhhhhhhh
Confidence            5899999999999999999998876432222  11111111 1111122 1122222222211       11111   12


Q ss_pred             hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC-ccCHHHHHHHHHHhC--CcEEEEc
Q 028686           71 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-AVPTSKGQALADEYG--IKFFETS  147 (205)
Q Consensus        71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~--~~~~~~S  147 (205)
                      ......+.++.+.+........ ...++..+..   ...++++++||.|+.+... ....++.++.....+  .+++.+|
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~vS  169 (188)
T d1puia_          94 EKRQSLQGLVVLMDIRHPLKDL-DQQMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFS  169 (188)
T ss_dssp             HHCTTEEEEEEEEETTSCCCHH-HHHHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECB
T ss_pred             hhhhheeEEEEeecccccchhH-HHHHHHHhhh---ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEEEe
Confidence            2223444555566665543222 2233344433   3578999999999854211 111122222222222  5789999


Q ss_pred             CCCCCCHHHHHHHHHHH
Q 028686          148 AKTNLNVEQVFFSIARD  164 (205)
Q Consensus       148 a~~~~gi~~~~~~i~~~  164 (205)
                      |++|.|++++++.|.+.
T Consensus       170 A~~g~Gid~L~~~i~~~  186 (188)
T d1puia_         170 SLKKQGVDKLRQKLDTW  186 (188)
T ss_dssp             TTTTBSHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            99999999999988654

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.65  E-value=1.9e-16  Score=117.52  Aligned_cols=152  Identities=17%  Similarity=0.148  Sum_probs=92.5

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCC--C-----------------------------CCCcccceeeEEEEEEEEECCEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGS--F-----------------------------TTSFITTIGIDFKIRTIELDGKR   51 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~--~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~   51 (205)
                      -++|+++|..++|||||+.+|+...  .                             ..+.......+.....+..++  
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~--   80 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK--   80 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS--
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCC--
Confidence            4899999999999999999986311  0                             011112122222223333443  


Q ss_pred             EEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChh---HHHHHHHHHHHHHhhcCCC-CcEEEEEeCCCCCCCCCcc
Q 028686           52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SFNNIRNWIRNIEQHASDN-VNKVLVGNKADMDESKRAV  127 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~-~piiiv~nK~Dl~~~~~~~  127 (205)
                      ..+.++||||+.+|......-++-+|++++|+|+.+..   ++.-..+..+.+......+ .++|+++||+|+.......
T Consensus        81 ~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iNK~D~~~~~~~~  160 (224)
T d1jnya3          81 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDE  160 (224)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCH
T ss_pred             ceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhCCCceEEEEEcccCCCccccH
Confidence            67899999999999999988999999999999999742   1111112222221111123 4688889999986532221


Q ss_pred             -----CHHHHHHHHHHhC-----CcEEEEcCCCCCCHHH
Q 028686          128 -----PTSKGQALADEYG-----IKFFETSAKTNLNVEQ  156 (205)
Q Consensus       128 -----~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~  156 (205)
                           ...++..+...++     ++++++||.+|.|+.+
T Consensus       161 ~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         161 KRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             HHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence                 1122333333333     6789999999998853

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.65  E-value=5.8e-17  Score=121.73  Aligned_cols=152  Identities=16%  Similarity=0.095  Sum_probs=82.3

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCC--CC-----------------------------CCcccceeeEEEEEEEEECCEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGS--FT-----------------------------TSFITTIGIDFKIRTIELDGKR   51 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~--~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~   51 (205)
                      .++|+++|..++|||||+.+|+...  ..                             .+..+....+.....+..++  
T Consensus        24 ~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~--  101 (245)
T d1r5ba3          24 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH--  101 (245)
T ss_dssp             EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS--
T ss_pred             ceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccccc--
Confidence            4789999999999999999995321  00                             00011111111111222333  


Q ss_pred             EEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChh---HHH---HHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCC
Q 028686           52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SFN---NIRNWIRNIEQHASDNVN-KVLVGNKADMDESK  124 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~p-iiiv~nK~Dl~~~~  124 (205)
                      ..+.+.|+||+..|......-...+|++++|+|+.+..   ++.   .....+..+..   .++| +++++||+|++..+
T Consensus       102 ~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~---~~i~~iiv~iNKmD~~~~~  178 (245)
T d1r5ba3         102 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART---QGINHLVVVINKMDEPSVQ  178 (245)
T ss_dssp             EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH---TTCSSEEEEEECTTSTTCS
T ss_pred             ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHH---cCCCeEEEEEEcCCCCccc
Confidence            46899999999999988888888999999999998731   111   12222222222   3454 77889999986532


Q ss_pred             Cc-cCHHH----HHHHHHHh-------CCcEEEEcCCCCCCHHHHHH
Q 028686          125 RA-VPTSK----GQALADEY-------GIKFFETSAKTNLNVEQVFF  159 (205)
Q Consensus       125 ~~-~~~~~----~~~~~~~~-------~~~~~~~Sa~~~~gi~~~~~  159 (205)
                      .. ...++    +..+....       .++++++||++|+||.++++
T Consensus       179 ~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         179 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             hhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            21 11122    22222222       25799999999999976543

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=5.9e-17  Score=121.18  Aligned_cols=149  Identities=14%  Similarity=0.067  Sum_probs=98.6

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhC--CCC-----------------------------CCcccceeeEEEEEEEEECCEE
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDG--SFT-----------------------------TSFITTIGIDFKIRTIELDGKR   51 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~--~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~   51 (205)
                      .++|+++|..++|||||+.+|+..  ...                             .+.....+++.....+.+.+  
T Consensus         6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--   83 (239)
T d1f60a3           6 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK--   83 (239)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS--
T ss_pred             ccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC--
Confidence            489999999999999999999631  000                             01122333333344455555  


Q ss_pred             EEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhH---H---HHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCC
Q 028686           52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS---F---NNIRNWIRNIEQHASDNVN-KVLVGNKADMDESK  124 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iiiv~nK~Dl~~~~  124 (205)
                      .++.++|+||+.+|......-+..+|++|+|+|+....-   +   .+....+..+..   .++| +|+++||+|+.+.+
T Consensus        84 ~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~---~gv~~iiv~iNKmD~~~~d  160 (239)
T d1f60a3          84 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVKWD  160 (239)
T ss_dssp             EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGTTC
T ss_pred             EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHH---cCCCeEEEEEECCCCCCCC
Confidence            578999999999999888889999999999999986421   1   112222222222   3565 77889999987633


Q ss_pred             Ccc---CHHHHHHHHHHhC-----CcEEEEcCCCCCCHHH
Q 028686          125 RAV---PTSKGQALADEYG-----IKFFETSAKTNLNVEQ  156 (205)
Q Consensus       125 ~~~---~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~  156 (205)
                      ...   ..+++..+....+     ++++.+|+.+|.|+-+
T Consensus       161 ~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         161 ESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            221   1233444555444     6789999999988654

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.64  E-value=5.4e-15  Score=111.77  Aligned_cols=112  Identities=13%  Similarity=0.105  Sum_probs=79.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCC--CCC----------------CcccceeeEEEEEEEEECCEEEEEEEEeCCChhhh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGS--FTT----------------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF   65 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~--~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   65 (205)
                      -+|+++|..++|||||+.+|+...  ...                +.............+.+++  .++.++||||+.+|
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~--~~~n~iDtPGh~dF   80 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYGDF   80 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSGGG
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc--cceeEEccCchhhh
Confidence            469999999999999999996422  100                0111122233344556666  56889999999999


Q ss_pred             hhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028686           66 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD  121 (205)
Q Consensus        66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~  121 (205)
                      .......++.+|++++|+|+.+.-...... .++.+..   .++|.++++||+|..
T Consensus        81 ~~e~~~al~~~D~avlvvda~~Gv~~~t~~-~~~~~~~---~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          81 VGEIRGALEAADAALVAVSAEAGVQVGTER-AWTVAER---LGLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTCSCHHHHH-HHHHHHH---TTCCEEEEEECGGGC
T ss_pred             hhhhhhhhcccCceEEEeeccCCccchhHH-HHHhhhh---ccccccccccccccc
Confidence            988888999999999999998754333222 2333333   469999999999963

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=2.8e-14  Score=111.24  Aligned_cols=127  Identities=19%  Similarity=0.157  Sum_probs=84.0

Q ss_pred             ce-EEEEECCCCCcHHHHHHHHHhCC--CC--------------CCcccceeeEEEEEEEEE--------------CCEE
Q 028686            3 FL-LRIYFERGGVGKSCLLLRFSDGS--FT--------------TSFITTIGIDFKIRTIEL--------------DGKR   51 (205)
Q Consensus         3 ~i-~i~v~G~~~~GKtsli~~l~~~~--~~--------------~~~~~t~~~~~~~~~~~~--------------~~~~   51 (205)
                      .| +|+|+|..++|||||+.+|+...  ..              .+..+...+......+.+              +++.
T Consensus        16 ~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~   95 (341)
T d1n0ua2          16 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS   95 (341)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred             cCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccc
Confidence            45 59999999999999999996321  10              011111111111111111              3456


Q ss_pred             EEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHH
Q 028686           52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK  131 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~  131 (205)
                      +.+.++||||+.+|.......++-+|++++|+|+.+.-.......|.... .   .++|+++++||+|....+.....++
T Consensus        96 ~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~-~---~~~p~i~viNKiDr~~~el~~~~~~  171 (341)
T d1n0ua2          96 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G---ERIKPVVVINKVDRALLELQVSKED  171 (341)
T ss_dssp             EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H---TTCEEEEEEECHHHHHHTSCCCHHH
T ss_pred             eEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHH-H---cCCCeEEEEECcccccccHHhhHHH
Confidence            78999999999999988888999999999999999864443333333322 2   4699999999999655455555555


Q ss_pred             HH
Q 028686          132 GQ  133 (205)
Q Consensus       132 ~~  133 (205)
                      +.
T Consensus       172 ~~  173 (341)
T d1n0ua2         172 LY  173 (341)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=4.6e-14  Score=112.85  Aligned_cols=160  Identities=13%  Similarity=0.071  Sum_probs=90.9

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCccccee---eEEEEEEEEECCEEEEEEEEeCCChhhhhh-----hhhhhcc
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIG---IDFKIRTIELDGKRIKLQIWDTAGQERFRT-----ITTAYYR   74 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----~~~~~~~   74 (205)
                      .++|+|+|.+|+|||||+|+|.+...........+   .+.....+...+ .-.+.+|||||......     +....+.
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~-~~~~~l~DtPG~~~~~~~~~~~~~~~~~~  134 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKMKFY  134 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccC-CCeEEEEeCCCcccccccHHHHHHHhhhh
Confidence            58999999999999999999998653221111111   011111112211 12378999999653221     2233356


Q ss_pred             CCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC------CCCccCHH----HH----HHHHHHhC
Q 028686           75 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE------SKRAVPTS----KG----QALADEYG  140 (205)
Q Consensus        75 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~------~~~~~~~~----~~----~~~~~~~~  140 (205)
                      .+|.++++.|..-.+.-.   .+...+..   .+.|+++|.||+|...      .......+    ++    .......+
T Consensus       135 ~~d~~l~~~~~~~~~~d~---~l~~~l~~---~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~~  208 (400)
T d1tq4a_         135 EYDFFIIISATRFKKNDI---DIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG  208 (400)
T ss_dssp             GCSEEEEEESSCCCHHHH---HHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             cceEEEEecCCCCCHHHH---HHHHHHHH---cCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHcC
Confidence            788888887754332222   23344443   3589999999999521      01111111    11    12222333


Q ss_pred             ---CcEEEEcCCCC--CCHHHHHHHHHHHHHHHh
Q 028686          141 ---IKFFETSAKTN--LNVEQVFFSIARDIKQRL  169 (205)
Q Consensus       141 ---~~~~~~Sa~~~--~gi~~~~~~i~~~~~~~~  169 (205)
                         -++|.+|..+.  .|+.++.+.+.+.+.++.
T Consensus       209 ~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~~  242 (400)
T d1tq4a_         209 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK  242 (400)
T ss_dssp             CSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred             CCCCCEEEecCCcccccCHHHHHHHHHHHhHHHH
Confidence               35788887653  589999988877765443

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.50  E-value=1.2e-13  Score=104.15  Aligned_cols=119  Identities=18%  Similarity=0.108  Sum_probs=71.0

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCC-CcccceeeEEEEEEEEECCEEEEEEEEeCCChhhh-------hhhhhh--
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-------RTITTA--   71 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~--   71 (205)
                      ..++|+++|.+|+|||||+|.|++..... ...+..+.+........++  ..+.++||||..+.       ......  
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~~~  108 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSFL  108 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHHHHH
Confidence            35899999999999999999999876432 2222222233334445666  46899999995321       111111  


Q ss_pred             hccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCC--CcEEEEEeCCCCCC
Q 028686           72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN--VNKVLVGNKADMDE  122 (205)
Q Consensus        72 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~nK~Dl~~  122 (205)
                      .....++++||++++...--......+..+...++.+  .+++||+||.|...
T Consensus       109 ~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~  161 (257)
T d1h65a_         109 LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP  161 (257)
T ss_dssp             TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred             hcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCC
Confidence            1235788888888765210011112223333332222  47899999999865

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.38  E-value=3e-13  Score=100.69  Aligned_cols=112  Identities=14%  Similarity=0.046  Sum_probs=66.6

Q ss_pred             EEEEEeCCChhhhhhhhhh---hc--cCCcEEEEEEeCC---ChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC
Q 028686           53 KLQIWDTAGQERFRTITTA---YY--RGAMGILLVYDVT---DESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK  124 (205)
Q Consensus        53 ~~~i~D~~g~~~~~~~~~~---~~--~~~d~~i~v~d~~---~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~  124 (205)
                      .+.+.|+||+..+......   +.  ...+.+++++|..   +++.+.............  ...|.++++||+|+...+
T Consensus        96 ~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~--~~~~~ivvinK~D~~~~~  173 (244)
T d1yrba1          96 DYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLSEE  173 (244)
T ss_dssp             SEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCCHH
T ss_pred             ceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH--hCCCceeeeeccccccHH
Confidence            4788899998764332211   11  2356788888875   344444332222222222  358999999999986521


Q ss_pred             CccC----------------------HHHHHH---HHHH--hCCcEEEEcCCCCCCHHHHHHHHHHHHH
Q 028686          125 RAVP----------------------TSKGQA---LADE--YGIKFFETSAKTNLNVEQVFFSIARDIK  166 (205)
Q Consensus       125 ~~~~----------------------~~~~~~---~~~~--~~~~~~~~Sa~~~~gi~~~~~~i~~~~~  166 (205)
                      ....                      ......   ....  ..++++++||++|+|+++++..|.+.+.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~~  242 (244)
T d1yrba1         174 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  242 (244)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence            1000                      000000   1111  1378999999999999999999888753

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.21  E-value=4.2e-11  Score=90.99  Aligned_cols=84  Identities=14%  Similarity=0.082  Sum_probs=52.1

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECC-------------EE--EEEEEEeCCChh---
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG-------------KR--IKLQIWDTAGQE---   63 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-------------~~--~~~~i~D~~g~~---   63 (205)
                      |.++|.++|.|+||||||+++|.+........|..+.+...-.+.+..             +.  ..+.++|+||..   
T Consensus         1 m~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga   80 (278)
T d1jala1           1 MGFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (278)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCc
Confidence            468999999999999999999998875433333222221111233221             11  247899999943   


Q ss_pred             -hhhhhhhh---hccCCcEEEEEEeC
Q 028686           64 -RFRTITTA---YYRGAMGILLVYDV   85 (205)
Q Consensus        64 -~~~~~~~~---~~~~~d~~i~v~d~   85 (205)
                       +-..+...   -++++|++++|+|+
T Consensus        81 ~~g~Glg~~FL~~ir~~d~LihVVr~  106 (278)
T d1jala1          81 SKGEGLGNKFLANIRETDAIGHVVRC  106 (278)
T ss_dssp             HHHGGGTCCHHHHHHTCSEEEEEEEC
T ss_pred             ccCCCccHHHHHHHHhccceEEEeec
Confidence             22334433   46789999999986

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.20  E-value=2.5e-11  Score=93.96  Aligned_cols=104  Identities=11%  Similarity=0.080  Sum_probs=61.3

Q ss_pred             EEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHH
Q 028686           52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK  131 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~  131 (205)
                      +.+.+++|.|.......   ...-+|..++|......+....   ....+...     .=++|+||+|+.+. .......
T Consensus       144 ~d~iiiETVG~gq~e~~---~~~~~D~~v~v~~p~~GD~iQ~---~k~gilE~-----aDi~vvNKaD~~~~-~~~~~~~  211 (323)
T d2qm8a1         144 FDVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDELQG---IKKGIFEL-----ADMIAVNKADDGDG-ERRASAA  211 (323)
T ss_dssp             CCEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC---------CCTTHHHH-----CSEEEEECCSTTCC-HHHHHHH
T ss_pred             CCeEEEeehhhhhhhhh---hhcccceEEEEeeccchhhhhh---hhhhHhhh-----hheeeEeccccccc-hHHHHHH
Confidence            34677777765432222   2334999999998887654322   22223322     33999999998652 2121122


Q ss_pred             HHHHHHH----------hCCcEEEEcCCCCCCHHHHHHHHHHHHHH
Q 028686          132 GQALADE----------YGIKFFETSAKTNLNVEQVFFSIARDIKQ  167 (205)
Q Consensus       132 ~~~~~~~----------~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~  167 (205)
                      ...+...          ...+++.+||+++.|+++++++|.+....
T Consensus       212 ~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~  257 (323)
T d2qm8a1         212 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSK  257 (323)
T ss_dssp             HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHH
Confidence            1222221          23579999999999999999999776543

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=2.9e-11  Score=93.68  Aligned_cols=87  Identities=10%  Similarity=0.107  Sum_probs=50.4

Q ss_pred             hccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCc-cCHHHHHHHHHH-------hCCcE
Q 028686           72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA-VPTSKGQALADE-------YGIKF  143 (205)
Q Consensus        72 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~-~~~~~~~~~~~~-------~~~~~  143 (205)
                      +...+|.+++|.+....+   .+......+...     +=++|+||+|+...... ....+.......       ...++
T Consensus       164 i~~~aD~~l~v~~P~~Gd---~iq~~k~gi~e~-----aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V  235 (327)
T d2p67a1         164 VARMVDCFISLQIAGGGD---DLQGIKKGLMEV-----ADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRV  235 (327)
T ss_dssp             HHTTCSEEEEEECC---------CCCCHHHHHH-----CSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEE
T ss_pred             hhhccceEEEEecCCCch---hhhhhchhhhcc-----ccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCccee
Confidence            445689988887665443   333333444443     23889999998542111 111122222211       12579


Q ss_pred             EEEcCCCCCCHHHHHHHHHHHHH
Q 028686          144 FETSAKTNLNVEQVFFSIARDIK  166 (205)
Q Consensus       144 ~~~Sa~~~~gi~~~~~~i~~~~~  166 (205)
                      +.+||.+|.|++++++.|.+...
T Consensus       236 ~~~SA~~g~Gi~eL~~~I~~~~~  258 (327)
T d2p67a1         236 LTCSALEKRGIDEIWHAIIDFKT  258 (327)
T ss_dssp             EECBGGGTBSHHHHHHHHHHHHH
T ss_pred             EEEEeeCCCCHHHHHHHHHHHHH
Confidence            99999999999999999877554

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.10  E-value=2.8e-10  Score=87.09  Aligned_cols=85  Identities=18%  Similarity=0.114  Sum_probs=53.7

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCC-CCCcccceeeEEEEEEEEECC---------------EEEEEEEEeCCChhh--
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDG---------------KRIKLQIWDTAGQER--   64 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~~~~i~D~~g~~~--   64 (205)
                      .++|.++|.|+||||||+|+|.+... .....|.++.+...-.+.+..               ....+.+.|.||...  
T Consensus        10 ~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~gA   89 (296)
T d1ni3a1          10 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA   89 (296)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccccc
Confidence            47999999999999999999998753 222222222221111233321               124688999998532  


Q ss_pred             --hhhh---hhhhccCCcEEEEEEeCCC
Q 028686           65 --FRTI---TTAYYRGAMGILLVYDVTD   87 (205)
Q Consensus        65 --~~~~---~~~~~~~~d~~i~v~d~~~   87 (205)
                        -..+   .-.-++.+|++++|+|+.+
T Consensus        90 ~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          90 STGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccHHHHHHHhhccceeEEEEeccC
Confidence              2222   2334678999999998754

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.94  E-value=8e-09  Score=78.79  Aligned_cols=117  Identities=14%  Similarity=0.194  Sum_probs=69.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCC-CCCcccceeeEEEEEEEE-------E---CCE----------------------
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIE-------L---DGK----------------------   50 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~-------~---~~~----------------------   50 (205)
                      -+|+|+|..++|||||+|+|++.++ +....+++..........       +   .+.                      
T Consensus        27 P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (299)
T d2akab1          27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGT  106 (299)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSS
T ss_pred             CeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhCC
Confidence            3689999999999999999999885 444334332111111000       0   000                      


Q ss_pred             -----------------EEEEEEEeCCChhh-------------hhhhhhhhccCCcEEE-EEEeCCChhHHHHHHHHHH
Q 028686           51 -----------------RIKLQIWDTAGQER-------------FRTITTAYYRGAMGIL-LVYDVTDESSFNNIRNWIR   99 (205)
Q Consensus        51 -----------------~~~~~i~D~~g~~~-------------~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~~~~   99 (205)
                                       ...+.++|+||...             ...+...|+...+.++ +|.+....-+-..+..+.+
T Consensus       107 ~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~  186 (299)
T d2akab1         107 NKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAK  186 (299)
T ss_dssp             TTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHH
T ss_pred             CcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHH
Confidence                             01378899999431             2244555666776554 5556654333333444444


Q ss_pred             HHHhhcCCCCcEEEEEeCCCCCCC
Q 028686          100 NIEQHASDNVNKVLVGNKADMDES  123 (205)
Q Consensus       100 ~i~~~~~~~~piiiv~nK~Dl~~~  123 (205)
                      .+..   ...++++|+||.|..+.
T Consensus       187 ~~~~---~~~r~i~Vltk~D~~~~  207 (299)
T d2akab1         187 EVDP---QGQRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHCT---TCSSEEEEEECGGGSCT
T ss_pred             HhCc---CCCceeeEEeccccccc
Confidence            4432   44689999999998653

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.91  E-value=1.1e-09  Score=84.53  Aligned_cols=83  Identities=19%  Similarity=0.124  Sum_probs=44.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcccce------eeEEEEEEEE----------------ECCEEEEEEEEeCCC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTI------GIDFKIRTIE----------------LDGKRIKLQIWDTAG   61 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~------~~~~~~~~~~----------------~~~~~~~~~i~D~~g   61 (205)
                      ++|+++|.|+||||||+|+|.+.+......|.+      |..+......                .......+.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            589999999999999999999877544333322      2211111100                011336799999999


Q ss_pred             hhhh----hhhhh---hhccCCcEEEEEEeCC
Q 028686           62 QERF----RTITT---AYYRGAMGILLVYDVT   86 (205)
Q Consensus        62 ~~~~----~~~~~---~~~~~~d~~i~v~d~~   86 (205)
                      -...    ..+..   ..++.+|++++|+|+.
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDAT  112 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETT
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEeccc
Confidence            5321    12222   2356899999999985

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.78  E-value=2.5e-08  Score=76.28  Aligned_cols=67  Identities=15%  Similarity=0.270  Sum_probs=40.9

Q ss_pred             EEEEEeCCChhh-------------hhhhhhhhccCCcEEEEEE-eCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 028686           53 KLQIWDTAGQER-------------FRTITTAYYRGAMGILLVY-DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA  118 (205)
Q Consensus        53 ~~~i~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~  118 (205)
                      .+.++|+||...             ...+...|+.+++.+++++ +....-.-.....+...+   .....++++|+||.
T Consensus       132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~---~~~~~r~i~Vitk~  208 (306)
T d1jwyb_         132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITKL  208 (306)
T ss_dssp             SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEECT
T ss_pred             CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHh---CcCCCeEEEEEecc
Confidence            377999999432             2355677888899877665 433221112222333333   22446899999999


Q ss_pred             CCCC
Q 028686          119 DMDE  122 (205)
Q Consensus       119 Dl~~  122 (205)
                      |...
T Consensus       209 D~~~  212 (306)
T d1jwyb_         209 DLMD  212 (306)
T ss_dssp             TSSC
T ss_pred             cccc
Confidence            9864

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.47  E-value=6e-08  Score=73.01  Aligned_cols=56  Identities=21%  Similarity=0.277  Sum_probs=34.9

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCCh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   62 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~   62 (205)
                      .++|+|+|.||||||||+|+|.+.+.. ...+..|.+.....+..+.   .+.++||||-
T Consensus       112 ~~~v~vvG~PNvGKSsliN~L~~~~~~-~~~~~pG~Tr~~~~i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         112 AIRALIIGIPNVGKSTLINRLAKKNIA-KTGDRPGITTSQQWVKVGK---ELELLDTPGI  167 (273)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCC
T ss_pred             ceEEEEEecCccchhhhhhhhhccceE-EECCcccccccceEEECCC---CeEEecCCCc
Confidence            588999999999999999999987642 1223333333333333332   3789999995

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.38  E-value=5e-07  Score=67.84  Aligned_cols=113  Identities=15%  Similarity=0.134  Sum_probs=75.1

Q ss_pred             hhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHH---HHhCCcEE
Q 028686           68 ITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALA---DEYGIKFF  144 (205)
Q Consensus        68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~  144 (205)
                      .....++.+|++++|.|+.+|.+..+-  +++.+   . .+.|+++|+||+||.+      .+...+|.   ...+...+
T Consensus         8 ~i~~~i~~~DvIl~V~DaR~P~ss~~~--~l~~~---~-~~Kp~IlVlNK~DLv~------~~~~~~w~~~f~~~~~~~i   75 (273)
T d1puja_           8 EVTEKLKLIDIVYELVDARIPMSSRNP--MIEDI---L-KNKPRIMLLNKADKAD------AAVTQQWKEHFENQGIRSL   75 (273)
T ss_dssp             HHHHHGGGCSEEEEEEETTSTTTTSCH--HHHHH---C-SSSCEEEEEECGGGSC------HHHHHHHHHHHHTTTCCEE
T ss_pred             HHHHHHHhCCEEEEEEECCCCCCCCCH--HHHHH---H-cCCCeEEEEECccCCc------hHHHHHHHHHHHhcCCccc
Confidence            345678899999999999887665431  12222   2 2579999999999964      23333333   34457889


Q ss_pred             EEcCCCCCCHHHHHHHHHHHHHHHhcc---cCCCCCCccccccCCCCCCCC
Q 028686          145 ETSAKTNLNVEQVFFSIARDIKQRLAD---TDSRSEPSTIKINQPDQAGGV  192 (205)
Q Consensus       145 ~~Sa~~~~gi~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  192 (205)
                      .+|+.++.+..++...+.+.+.+..+.   ......+.++-+...++.++|
T Consensus        76 ~isa~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~vvG~PNvGKS  126 (273)
T d1puja_          76 SINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKS  126 (273)
T ss_dssp             ECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHH
T ss_pred             eeecccCCCccccchhhhhhhhhhhhhhhhccCCCCceEEEEEecCccchh
Confidence            999999999988888877766554332   233334445555566665554

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.37  E-value=4.1e-07  Score=65.98  Aligned_cols=85  Identities=22%  Similarity=0.209  Sum_probs=60.5

Q ss_pred             hhccCCcEEEEEEeCCChh-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHH--hCCcEEEEc
Q 028686           71 AYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADE--YGIKFFETS  147 (205)
Q Consensus        71 ~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~~S  147 (205)
                      -.+.+.|.+++|+++.+|+ +...+..|+-....   .++|.+||+||+||.+.+   ..+....+...  .+.+++.+|
T Consensus         6 P~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~---~~i~pvIvlnK~DL~~~~---~~~~~~~~~~~~~~~~~v~~vS   79 (225)
T d1u0la2           6 PHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NELETVMVINKMDLYDED---DLRKVRELEEIYSGLYPIVKTS   79 (225)
T ss_dssp             TTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHH---HHHHHHHHHHHHTTTSCEEECC
T ss_pred             CCcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---cCCCEEEEEeCcccCCHH---HHHHHHHhhcccccceeEEEec
Confidence            3567899999999988764 45556655555544   469999999999996421   12233333332  247889999


Q ss_pred             CCCCCCHHHHHHHH
Q 028686          148 AKTNLNVEQVFFSI  161 (205)
Q Consensus       148 a~~~~gi~~~~~~i  161 (205)
                      ++++.|++++..++
T Consensus        80 a~~~~g~~~L~~~l   93 (225)
T d1u0la2          80 AKTGMGIEELKEYL   93 (225)
T ss_dssp             TTTCTTHHHHHHHH
T ss_pred             cccchhHhhHHHHh
Confidence            99999999998876

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.35  E-value=4.4e-06  Score=57.94  Aligned_cols=23  Identities=26%  Similarity=0.382  Sum_probs=21.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      +||+++|++|+|||||++.+++.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            58999999999999999999874

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=1.7e-06  Score=62.85  Aligned_cols=71  Identities=10%  Similarity=0.145  Sum_probs=40.7

Q ss_pred             CcEEEEEEeCCChhHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC--CcEEEEcCCCCC
Q 028686           76 AMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG--IKFFETSAKTNL  152 (205)
Q Consensus        76 ~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~  152 (205)
                      .+.+|.|+|+........- ..+..++..   .+   +|++||+|+.++     .+.+++..+..+  +++++++ ....
T Consensus       122 l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~---AD---~ivlNK~Dl~~~-----~~~~~~~l~~lNP~a~Ii~~~-~g~v  189 (222)
T d1nija1         122 LDGVIALVDAVHADEQMNQFTIAQSQVGY---AD---RILLTKTDVAGE-----AEKLHERLARINARAPVYTVT-HGDI  189 (222)
T ss_dssp             EEEEEEEEETTTHHHHHHHCHHHHHHHHT---CS---EEEEECTTTCSC-----THHHHHHHHHHCSSSCEEECC-SSCC
T ss_pred             ccchhhhhhhhhhhhhhhhhHHHHHHHHh---CC---cccccccccccH-----HHHHHHHHHHHhCCCeEEEee-CCcc
Confidence            5778889999875432222 123333322   22   788999998642     244555555555  6666543 3345


Q ss_pred             CHHHHH
Q 028686          153 NVEQVF  158 (205)
Q Consensus       153 gi~~~~  158 (205)
                      .++.+|
T Consensus       190 ~~~~ll  195 (222)
T d1nija1         190 DLGLLF  195 (222)
T ss_dssp             CGGGGS
T ss_pred             CHHHhh
Confidence            666664

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.17  E-value=2.9e-07  Score=66.98  Aligned_cols=86  Identities=15%  Similarity=0.170  Sum_probs=61.1

Q ss_pred             hhccCCcEEEEEEeCCChh-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHH---HHHHHhCCcEEEE
Q 028686           71 AYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ---ALADEYGIKFFET  146 (205)
Q Consensus        71 ~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~---~~~~~~~~~~~~~  146 (205)
                      -.+.+.|.+++|+++.+|+ ++..+..++-....   .+++.+||+||+||.++  ....+.+.   +.....|++++.+
T Consensus         6 P~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~---~~i~pvIvlnK~DL~~~--~~~~~~~~~~~~~y~~~g~~v~~~   80 (231)
T d1t9ha2           6 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIED--QDTEDTIQAYAEDYRNIGYDVYLT   80 (231)
T ss_dssp             TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCC--HHHHHHHHHHHHHHHHHTCCEEEC
T ss_pred             CCccccCEEEEEEECCCCCCCHHHHHHHHHHHHH---cCCCEEEEEeccccccc--HHHHHHHHHHHHHHhhccccceee
Confidence            3467899999999988764 45666655555443   56999999999999642  11222233   3344568999999


Q ss_pred             cCCCCCCHHHHHHHH
Q 028686          147 SAKTNLNVEQVFFSI  161 (205)
Q Consensus       147 Sa~~~~gi~~~~~~i  161 (205)
                      |+.++.|++++..++
T Consensus        81 Sa~~~~gl~~L~~~l   95 (231)
T d1t9ha2          81 SSKDQDSLADIIPHF   95 (231)
T ss_dssp             CHHHHTTCTTTGGGG
T ss_pred             ecCChhHHHHHHHhh
Confidence            999999998887654

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.02  E-value=6.7e-06  Score=58.80  Aligned_cols=92  Identities=11%  Similarity=0.085  Sum_probs=52.9

Q ss_pred             EEEEEEeCCChhhhhhh----hhhh---c-----cCCcEEEEEEeCCCh-hHHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 028686           52 IKLQIWDTAGQERFRTI----TTAY---Y-----RGAMGILLVYDVTDE-SSFNNIRNWIRNIEQHASDNVNKVLVGNKA  118 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~~----~~~~---~-----~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piiiv~nK~  118 (205)
                      ..+.++||+|...+...    ...+   +     ...+-.++|.|.+.. +....+...+..+.       +--++++|.
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~-------~~~lI~TKl  161 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVG-------LTGVIVTKL  161 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHC-------CSEEEEECT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhccC-------CceEEEecc
Confidence            45799999995433211    1111   1     134667888888764 44555444444431       235789999


Q ss_pred             CCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHH
Q 028686          119 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV  157 (205)
Q Consensus       119 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  157 (205)
                      |-..     ..-.+..++...+.|+..++.  |++.+++
T Consensus       162 Det~-----~~G~~l~~~~~~~~Pi~~i~~--Gq~p~Dl  193 (207)
T d1okkd2         162 DGTA-----KGGVLIPIVRTLKVPIKFVGV--GEGPDDL  193 (207)
T ss_dssp             TSSC-----CCTTHHHHHHHHCCCEEEEEC--SSSTTCE
T ss_pred             CCCC-----CccHHHHHHHHHCCCEEEEeC--CCChHhC
Confidence            9532     123345667778888777773  4445433

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.97  E-value=3.7e-06  Score=60.84  Aligned_cols=23  Identities=35%  Similarity=0.423  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      ..+++|.+|||||||+|+|.+..
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~  119 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGL  119 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTC
T ss_pred             eEEEECCCCCCHHHHHHhhcchh
Confidence            46899999999999999998753

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.95  E-value=1e-05  Score=58.08  Aligned_cols=91  Identities=20%  Similarity=0.158  Sum_probs=52.4

Q ss_pred             EEEEEEeCCChhhhhhh----hhhh---cc-----CCcEEEEEEeCCCh-hHHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 028686           52 IKLQIWDTAGQERFRTI----TTAY---YR-----GAMGILLVYDVTDE-SSFNNIRNWIRNIEQHASDNVNKVLVGNKA  118 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~~----~~~~---~~-----~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piiiv~nK~  118 (205)
                      +.+.++||+|...++..    ...+   +.     ..+-.++|.|.+.. +.+..+...+..+       -+--++++|.
T Consensus        94 ~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-------~~~~lI~TKl  166 (213)
T d1vmaa2          94 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAV-------NVTGIILTKL  166 (213)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHHS-------CCCEEEEECG
T ss_pred             CCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhhhhhcccc-------CCceEEEecc
Confidence            35799999995432211    1111   11     13567889888763 3344443333222       2346789999


Q ss_pred             CCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHH
Q 028686          119 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ  156 (205)
Q Consensus       119 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  156 (205)
                      |...     ..-.+..++...+.|+..++  +|+++++
T Consensus       167 De~~-----~~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  197 (213)
T d1vmaa2         167 DGTA-----KGGITLAIARELGIPIKFIG--VGEKAED  197 (213)
T ss_dssp             GGCS-----CTTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             cCCC-----cccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            9532     23455667778888888777  4666654

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.92  E-value=2e-05  Score=56.43  Aligned_cols=91  Identities=16%  Similarity=0.185  Sum_probs=52.8

Q ss_pred             EEEEEEeCCChhhhhh----hhhh---hcc-----CCcEEEEEEeCCCh-hHHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 028686           52 IKLQIWDTAGQERFRT----ITTA---YYR-----GAMGILLVYDVTDE-SSFNNIRNWIRNIEQHASDNVNKVLVGNKA  118 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~----~~~~---~~~-----~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piiiv~nK~  118 (205)
                      +.+.++||+|....+.    ....   .++     ..+-.++|.|.+.. +....+...++.+       -+--++++|.
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-------~~~~lIlTKl  164 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV-------GLTGITLTKL  164 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS-------CCCEEEEECC
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc-------CCceEEEeec
Confidence            3578999999543221    1111   122     23577888888763 3444443333322       1336789999


Q ss_pred             CCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHH
Q 028686          119 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ  156 (205)
Q Consensus       119 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  156 (205)
                      |-..     ..-.+..++...++|+..++  +|++|++
T Consensus       165 De~~-----~~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         165 DGTA-----KGGVIFSVADQFGIPIRYIG--VGERIED  195 (211)
T ss_dssp             TTCT-----TTTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             CCCC-----CccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            9532     23455666778888988777  5666654

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.86  E-value=3.7e-06  Score=57.82  Aligned_cols=25  Identities=28%  Similarity=0.307  Sum_probs=22.5

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHh
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      |...+|+|+|+|||||||+.+.|..
T Consensus         2 m~~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           2 MLLPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHH
Confidence            6678999999999999999999965

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=5.4e-06  Score=56.85  Aligned_cols=24  Identities=29%  Similarity=0.437  Sum_probs=21.3

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHh
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      |.++ |+|+|.+|||||||+++|+.
T Consensus         1 m~Pv-i~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           1 MIPL-LAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             CCCE-EEEECCTTSCHHHHHHHHHH
T ss_pred             CCCE-EEEEcCCCCCHHHHHHHHHH
Confidence            5665 89999999999999999975

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.78  E-value=4e-05  Score=54.82  Aligned_cols=91  Identities=14%  Similarity=0.140  Sum_probs=52.3

Q ss_pred             EEEEEEeCCChhhhhh------hhhhhc--cCCcEEEEEEeCCChh-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686           52 IKLQIWDTAGQERFRT------ITTAYY--RGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  122 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~  122 (205)
                      ..+.++||+|...+..      ....+.  -..+-.++|.|++..+ ..+.+..   ... ..   -+--++++|.|...
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~---~~~-~~---~~~~lI~TKlDet~  167 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASK---FNQ-AS---KIGTIIITKMDGTA  167 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHH---HHH-HC---TTEEEEEECTTSCS
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhh---hhc-cc---CcceEEEecccCCC
Confidence            3589999999643221      111111  1356678888887643 3333322   221 11   12347799999532


Q ss_pred             CCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHH
Q 028686          123 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ  156 (205)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  156 (205)
                           ..-.+-.++...++|+..++  +|+++++
T Consensus       168 -----~~G~~l~~~~~~~lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         168 -----KGGGALSAVAATGATIKFIG--TGEKIDE  194 (211)
T ss_dssp             -----CHHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             -----cccHHHHHHHHHCcCEEEEe--CCCCccc
Confidence                 34566677778888887777  4666654

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.76  E-value=8.2e-06  Score=55.01  Aligned_cols=25  Identities=24%  Similarity=0.186  Sum_probs=21.3

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhC
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      |..+ |++.|+|||||||++++|...
T Consensus         1 Mkkl-Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           1 MKKI-ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             CCEE-EEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEE-EEEECCCCCCHHHHHHHHHHh
Confidence            5665 789999999999999998653

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.75  E-value=2.9e-06  Score=61.58  Aligned_cols=23  Identities=35%  Similarity=0.459  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      ..+++|.+|||||||+|+|.+..
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC--
T ss_pred             eEEEECCCCccHHHHHHhhccHh
Confidence            45799999999999999998753

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.73  E-value=0.00011  Score=52.33  Aligned_cols=84  Identities=20%  Similarity=0.189  Sum_probs=48.7

Q ss_pred             EEEEEEeCCChhhhhhh----hhhh--ccCCcEEEEEEeCCChh-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC
Q 028686           52 IKLQIWDTAGQERFRTI----TTAY--YRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK  124 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~  124 (205)
                      ..+.++||+|....+..    +..+  ..+.+-.++|.|.+..+ ..+.+..+++.+    .   +--++++|.|...  
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~----~---~~~~I~TKlDe~~--  163 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKV----G---VTGLVLTKLDGDA--  163 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHT----C---CCEEEEECGGGCS--
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhC----C---CCeeEEeecCccc--
Confidence            35789999995432211    1112  22567788898887654 333332222222    1   2247899999532  


Q ss_pred             CccCHHHHHHHHHHhCCcEEEEc
Q 028686          125 RAVPTSKGQALADEYGIKFFETS  147 (205)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~S  147 (205)
                         ..-.+-.++...+.|+..++
T Consensus       164 ---~~G~~l~~~~~~~~Pi~~i~  183 (207)
T d1ls1a2         164 ---RGGAALSARHVTGKPIYFAG  183 (207)
T ss_dssp             ---SCHHHHHHHHHHCCCEEEEC
T ss_pred             ---cchHHHHHHHHHCCCEEEEe
Confidence               23555667778888877665

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.68  E-value=1e-05  Score=56.04  Aligned_cols=38  Identities=16%  Similarity=0.274  Sum_probs=27.4

Q ss_pred             HHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHHHHHHHhccc
Q 028686          132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADT  172 (205)
Q Consensus       132 ~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~~~  172 (205)
                      ..++.+.++.+++.+.+   .++++.++.+++.+.......
T Consensus       148 ~~~~l~~~~~~~i~i~~---~~~~e~~~~i~~~I~~ll~~~  185 (192)
T d1lw7a2         148 LKKLLDKYKVPYIEIES---PSYLDRYNQVKAVIEKVLNEE  185 (192)
T ss_dssp             HHHHHHGGGCCCEEEEC---SSHHHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHCCCCEEEeCC---CCHHHHHHHHHHHHHHHHCcC
Confidence            44555666788887764   478999999988887765543

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.61  E-value=1.7e-05  Score=54.30  Aligned_cols=25  Identities=36%  Similarity=0.323  Sum_probs=21.1

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhC
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      |..+ |+|.|+|||||||++++|...
T Consensus         1 M~kl-I~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           1 MKKL-YIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             CEEE-EEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeE-EEEECCCCCCHHHHHHHHHHH
Confidence            4544 889999999999999999764

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.58  E-value=2.1e-05  Score=53.96  Aligned_cols=25  Identities=12%  Similarity=0.049  Sum_probs=22.1

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhC
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      ..++|+|.|+|||||||+.+.|...
T Consensus         4 k~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           4 KGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            4589999999999999999999653

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.54  E-value=2.3e-05  Score=54.35  Aligned_cols=22  Identities=14%  Similarity=0.167  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHHh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      +||+|+|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998855

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.45  E-value=3.6e-05  Score=53.55  Aligned_cols=23  Identities=17%  Similarity=0.196  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      ++|+|+|+|||||||+.+.|...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999988753

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.44  E-value=3.9e-05  Score=53.95  Aligned_cols=25  Identities=20%  Similarity=0.232  Sum_probs=22.0

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhC
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      +.+||+|+|+|||||||+...|...
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHH
Confidence            3579999999999999999999763

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.43  E-value=3.8e-05  Score=53.36  Aligned_cols=23  Identities=13%  Similarity=0.333  Sum_probs=20.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      +||+|+|+|||||||+.+.|...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999998653

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.41  E-value=3.2e-05  Score=54.22  Aligned_cols=24  Identities=13%  Similarity=-0.092  Sum_probs=21.2

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhC
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      +++|+|+|+|||||||+.+.|...
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            678999999999999999988643

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.38  E-value=4.8e-05  Score=53.25  Aligned_cols=23  Identities=13%  Similarity=0.193  Sum_probs=21.0

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      -+||+++|+|||||||+...|..
T Consensus         3 ~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           3 GVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHH
Confidence            47999999999999999999875

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.36  E-value=4.6e-05  Score=52.82  Aligned_cols=22  Identities=14%  Similarity=0.039  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      +||+|+|+|||||||..+.|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999988864

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.36  E-value=5.4e-05  Score=52.59  Aligned_cols=23  Identities=13%  Similarity=0.196  Sum_probs=21.0

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      .+||+|+|+|||||||+.+.|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999965

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.32  E-value=6.9e-05  Score=53.62  Aligned_cols=25  Identities=16%  Similarity=0.018  Sum_probs=23.1

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHh
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      |..+.|++-|+|||||||....|..
T Consensus         1 Mk~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           1 MKTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            8899999999999999999998865

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.30  E-value=6.9e-05  Score=51.23  Aligned_cols=19  Identities=16%  Similarity=0.191  Sum_probs=17.5

Q ss_pred             EEECCCCCcHHHHHHHHHh
Q 028686            7 IYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         7 ~v~G~~~~GKtsli~~l~~   25 (205)
                      .|+|.+|||||||+++|+.
T Consensus         5 ~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           5 QVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEECCTTSSHHHHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHHHH
Confidence            6999999999999999865

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.21  E-value=9.8e-05  Score=51.73  Aligned_cols=23  Identities=13%  Similarity=0.039  Sum_probs=20.1

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      +.-|+|+|+|||||||+.++|..
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34589999999999999999965

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.20  E-value=8.7e-05  Score=49.97  Aligned_cols=22  Identities=18%  Similarity=0.144  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .|+|+|++||||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999764

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00011  Score=51.41  Aligned_cols=23  Identities=22%  Similarity=0.263  Sum_probs=20.6

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      ++.|+|+|+|||||||....|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998865

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00018  Score=53.55  Aligned_cols=57  Identities=19%  Similarity=0.037  Sum_probs=38.4

Q ss_pred             EEEECCCCCcHHHHHHHHHhCCC--CC---CcccceeeEEEEEEEEECCEEEEEEEEeCCChh
Q 028686            6 RIYFERGGVGKSCLLLRFSDGSF--TT---SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   63 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~~--~~---~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~   63 (205)
                      |.++|+.++|||+|+|.|++...  ..   ....|.|+-.....+ .++....+.++||.|..
T Consensus        35 vsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~-~~~~~~~~~~lDteG~~   96 (277)
T d1f5na2          35 VAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPH-PKKPGHILVLLDTEGLG   96 (277)
T ss_dssp             EEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEEC-SSSTTCEEEEEEECCBC
T ss_pred             EEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeec-cCCCCceEEEEeccccc
Confidence            67899999999999999998763  21   223455643332222 23445678899999964

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.17  E-value=0.00012  Score=51.66  Aligned_cols=23  Identities=13%  Similarity=0.128  Sum_probs=20.2

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      +.-|+++|.|||||||+.++|..
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34589999999999999999975

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.16  E-value=0.0001  Score=50.87  Aligned_cols=22  Identities=18%  Similarity=0.140  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      .-|+++|.|||||||+++++..
T Consensus        15 ~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          15 EVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTG
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999864

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.14  E-value=0.0001  Score=50.35  Aligned_cols=22  Identities=23%  Similarity=0.232  Sum_probs=19.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      -||+++|++||||||+.+.|..
T Consensus         2 p~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999888854

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00012  Score=50.21  Aligned_cols=21  Identities=29%  Similarity=0.360  Sum_probs=18.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHh
Q 028686            5 LRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~   25 (205)
                      .|+|.|++|+|||||+..+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            478999999999999999864

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.07  E-value=0.00014  Score=49.53  Aligned_cols=21  Identities=24%  Similarity=0.271  Sum_probs=18.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHh
Q 028686            5 LRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~   25 (205)
                      +|+++|++||||||+.+.|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988854

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.00018  Score=49.87  Aligned_cols=25  Identities=16%  Similarity=0.162  Sum_probs=21.1

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhC
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      |..+ |+|+|++|+||+||+++|+..
T Consensus         2 m~k~-ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           2 MRKT-LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             CCCE-EEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCc-EEEECCCCCCHHHHHHHHHHh
Confidence            4444 889999999999999999854

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.00  E-value=0.00019  Score=48.84  Aligned_cols=20  Identities=20%  Similarity=0.320  Sum_probs=18.0

Q ss_pred             EEEECCCCCcHHHHHHHHHh
Q 028686            6 RIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~   25 (205)
                      ++|+|++||||||+.+.|..
T Consensus         9 ivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           9 YVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEECSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56789999999999999865

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.00  E-value=0.00019  Score=49.37  Aligned_cols=20  Identities=20%  Similarity=0.071  Sum_probs=17.7

Q ss_pred             EEEECCCCCcHHHHHHHHHh
Q 028686            6 RIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~   25 (205)
                      |+|.|.+||||||+++.|..
T Consensus         4 I~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67889999999999998854

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.96  E-value=0.00021  Score=49.83  Aligned_cols=21  Identities=29%  Similarity=0.330  Sum_probs=19.2

Q ss_pred             EEEECCCCCcHHHHHHHHHhC
Q 028686            6 RIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~   26 (205)
                      |+|+|++|||||||+++|+..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            689999999999999999764

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.93  E-value=0.00022  Score=48.63  Aligned_cols=21  Identities=19%  Similarity=0.196  Sum_probs=18.7

Q ss_pred             EEEECCCCCcHHHHHHHHHhC
Q 028686            6 RIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~   26 (205)
                      |+|.|++||||||+.+.|...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            778899999999999988764

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.93  E-value=0.00023  Score=51.80  Aligned_cols=22  Identities=27%  Similarity=0.150  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      +|+|+|++|||||||++.|.+-
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5899999999999999999874

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.92  E-value=0.00024  Score=49.76  Aligned_cols=21  Identities=14%  Similarity=0.202  Sum_probs=18.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHh
Q 028686            5 LRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~   25 (205)
                      -|+|+|+|||||||+...|..
T Consensus        10 iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_          10 VIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378899999999999999966

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.91  E-value=0.00033  Score=47.79  Aligned_cols=22  Identities=9%  Similarity=-0.008  Sum_probs=19.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      +-|.++|.|||||||+.+.|..
T Consensus         7 ~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           7 FTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5688999999999999988864

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.90  E-value=0.00026  Score=49.05  Aligned_cols=21  Identities=19%  Similarity=0.241  Sum_probs=18.9

Q ss_pred             EEEECCCCCcHHHHHHHHHhC
Q 028686            6 RIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~   26 (205)
                      |+|+|++|||||||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            688999999999999999764

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.89  E-value=0.00025  Score=48.93  Aligned_cols=21  Identities=33%  Similarity=0.368  Sum_probs=17.5

Q ss_pred             EE-EEECCCCCcHHHHHHHHHh
Q 028686            5 LR-IYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         5 ~i-~v~G~~~~GKtsli~~l~~   25 (205)
                      || +|.|.+||||||+++.|..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            45 4579999999999999854

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.87  E-value=0.00031  Score=51.43  Aligned_cols=23  Identities=17%  Similarity=0.106  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .-|++.|+||+|||||+..|.+.
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            45899999999999999999774

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.85  E-value=0.00031  Score=48.11  Aligned_cols=21  Identities=10%  Similarity=0.082  Sum_probs=18.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHh
Q 028686            5 LRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~   25 (205)
                      .|+++|++||||||+.+.|..
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999999854

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.83  E-value=0.00033  Score=53.27  Aligned_cols=24  Identities=17%  Similarity=0.062  Sum_probs=21.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      -+|+|.|+.|||||||++.|+..-
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCEEEEeeccccchHHHHHHhhhc
Confidence            468999999999999999998753

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.00024  Score=49.33  Aligned_cols=22  Identities=14%  Similarity=0.197  Sum_probs=19.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      +-|.++|.|||||||+.+.|..
T Consensus        20 ~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          20 CTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999999964

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.82  E-value=0.0003  Score=49.77  Aligned_cols=22  Identities=27%  Similarity=0.338  Sum_probs=19.8

Q ss_pred             EEEECCCCCcHHHHHHHHHhCC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      ++++|+.|||||||++.+++.-
T Consensus        30 ~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          30 VNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCChHHHHHHHHhccc
Confidence            6899999999999999998753

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.82  E-value=0.00032  Score=51.08  Aligned_cols=22  Identities=18%  Similarity=0.200  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .++++|++|||||||++.|.+-
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            5799999999999999999774

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.00034  Score=50.54  Aligned_cols=22  Identities=27%  Similarity=0.383  Sum_probs=19.6

Q ss_pred             EEEECCCCCcHHHHHHHHHhCC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      ++++|++|||||||++.+.+-.
T Consensus        29 ~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          29 VVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCChHHHHHHHHhcCC
Confidence            6899999999999999987753

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00043  Score=49.07  Aligned_cols=24  Identities=17%  Similarity=0.003  Sum_probs=21.1

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHh
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      +++-|+|.|++|||||||.+.|..
T Consensus         1 ~P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           1 EPFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999998854

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.79  E-value=0.0003  Score=51.57  Aligned_cols=22  Identities=23%  Similarity=0.179  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .++|+|++|||||||++.|.+-
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            5899999999999999999774

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.79  E-value=0.00031  Score=49.15  Aligned_cols=21  Identities=14%  Similarity=0.161  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHh
Q 028686            5 LRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~   25 (205)
                      -|+|+|+|||||||+..+|..
T Consensus        10 iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378899999999999999966

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.79  E-value=0.00045  Score=46.96  Aligned_cols=26  Identities=19%  Similarity=0.112  Sum_probs=20.3

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhC
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      |..-=|+|.|.+||||||+.+.|...
T Consensus         1 M~~kiI~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           1 MTTRMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            33334666699999999999999764

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.78  E-value=0.00033  Score=50.53  Aligned_cols=22  Identities=23%  Similarity=0.132  Sum_probs=19.3

Q ss_pred             EEEECCCCCcHHHHHHHHHhCC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      ++++|++|||||||++.+.+-.
T Consensus        34 ~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          34 VSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCcchhhHhccCCC
Confidence            6899999999999999887743

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.78  E-value=0.00037  Score=48.75  Aligned_cols=21  Identities=29%  Similarity=0.368  Sum_probs=18.8

Q ss_pred             EEEECCCCCcHHHHHHHHHhC
Q 028686            6 RIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~   26 (205)
                      |+|+|++|||||||+++|...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999998653

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.00036  Score=51.06  Aligned_cols=22  Identities=18%  Similarity=0.212  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .++++|++|||||||++.+.+-
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl   63 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNL   63 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcc
Confidence            5799999999999999998774

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.75  E-value=0.00038  Score=50.26  Aligned_cols=22  Identities=23%  Similarity=0.338  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .+++.|+||+||||+++.+.+.
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999764

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.75  E-value=0.00039  Score=50.13  Aligned_cols=22  Identities=18%  Similarity=0.196  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .+++.|+||+||||+++.|...
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHhc
Confidence            4899999999999999999764

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.74  E-value=0.00046  Score=47.87  Aligned_cols=23  Identities=22%  Similarity=0.050  Sum_probs=20.1

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      ++=|+|-|++|||||||.+.|..
T Consensus        22 ~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          22 RLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45688999999999999999864

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.73  E-value=0.00042  Score=50.25  Aligned_cols=22  Identities=23%  Similarity=0.252  Sum_probs=19.7

Q ss_pred             EEEECCCCCcHHHHHHHHHhCC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      ++++|+.|||||||++.+.+-.
T Consensus        27 ~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCChHHHHHHHHHcCC
Confidence            5789999999999999998854

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.72  E-value=0.00049  Score=48.26  Aligned_cols=24  Identities=17%  Similarity=0.245  Sum_probs=20.5

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhC
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .=+++++|+||+|||++++.|...
T Consensus        43 k~n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          43 KNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEecCCcccHHHHHHHHHH
Confidence            347899999999999999888653

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.69  E-value=0.00043  Score=51.51  Aligned_cols=22  Identities=23%  Similarity=0.283  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .++|+|+.|||||||++.+.+.
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            4799999999999999999874

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.68  E-value=0.00047  Score=49.99  Aligned_cols=22  Identities=18%  Similarity=0.241  Sum_probs=19.9

Q ss_pred             EEEECCCCCcHHHHHHHHHhCC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      ++++|++|||||||++.+.+-.
T Consensus        35 ~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          35 LVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCChHHHHHHHHHcCC
Confidence            6899999999999999998854

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.68  E-value=0.00047  Score=48.88  Aligned_cols=21  Identities=29%  Similarity=0.327  Sum_probs=19.1

Q ss_pred             EEEECCCCCcHHHHHHHHHhC
Q 028686            6 RIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~   26 (205)
                      |+|+|++|||||||+++|+..
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            689999999999999999764

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.62  E-value=0.00056  Score=49.25  Aligned_cols=22  Identities=18%  Similarity=0.194  Sum_probs=20.1

Q ss_pred             EEEECCCCCcHHHHHHHHHhCC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      ++++|++|||||||++.+.+-.
T Consensus        29 ~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          29 FVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCc
Confidence            6899999999999999998864

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.60  E-value=0.00057  Score=49.56  Aligned_cols=23  Identities=22%  Similarity=0.280  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      -++++|++|||||||++.+.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            36899999999999999998754

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.57  E-value=0.00051  Score=49.84  Aligned_cols=22  Identities=23%  Similarity=0.093  Sum_probs=19.7

Q ss_pred             EEEECCCCCcHHHHHHHHHhCC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      ++++|++|||||||++.+.+-.
T Consensus        34 ~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          34 YGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHcCCc
Confidence            6899999999999999997753

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.56  E-value=0.00067  Score=50.05  Aligned_cols=23  Identities=17%  Similarity=0.183  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      =+++++|+||+|||++++.|...
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHH
Confidence            47899999999999999888653

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.53  E-value=0.00038  Score=51.06  Aligned_cols=22  Identities=23%  Similarity=0.173  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      +++|+|++|||||||++.+.+-
T Consensus        46 ~vaivG~sGsGKSTLl~ll~gl   67 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPRF   67 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHhc
Confidence            5899999999999999988763

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.00049  Score=49.74  Aligned_cols=21  Identities=33%  Similarity=0.373  Sum_probs=19.3

Q ss_pred             EEEECCCCCcHHHHHHHHHhC
Q 028686            6 RIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~   26 (205)
                      ++++|+.|||||||++.+.+.
T Consensus        28 ~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          28 LHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCcHHHHHHHHhCC
Confidence            689999999999999999874

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.51  E-value=0.00065  Score=49.32  Aligned_cols=22  Identities=18%  Similarity=0.179  Sum_probs=19.9

Q ss_pred             EEEECCCCCcHHHHHHHHHhCC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      ++++|+.|||||||++.+.+-.
T Consensus        35 ~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          35 VTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHhCCC
Confidence            6899999999999999998854

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.48  E-value=0.00074  Score=49.20  Aligned_cols=23  Identities=13%  Similarity=0.161  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      ..|++.|+||+|||++++.+.+.
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhhc
Confidence            35899999999999999999764

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.46  E-value=0.0019  Score=43.52  Aligned_cols=23  Identities=22%  Similarity=0.200  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      -|++-|+-|||||||++.++.+-
T Consensus        35 ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEecCCCccHHHHHHHHHhhc
Confidence            37788999999999999997653

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.45  E-value=0.00079  Score=48.79  Aligned_cols=22  Identities=14%  Similarity=0.271  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .+++.|+||+||||++..+++.
T Consensus        54 ~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          54 AAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999999875

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.44  E-value=0.00082  Score=48.12  Aligned_cols=22  Identities=23%  Similarity=0.335  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .+++.|++|+||||+++.+...
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            5789999999999999998763

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.42  E-value=0.0005  Score=49.88  Aligned_cols=23  Identities=13%  Similarity=0.091  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      .++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            36899999999999999998854

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.41  E-value=0.00095  Score=48.37  Aligned_cols=22  Identities=23%  Similarity=0.072  Sum_probs=19.9

Q ss_pred             EEEECCCCCcHHHHHHHHHhCC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      ++++|+.|||||||++.+.+..
T Consensus        31 ~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          31 FGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            5799999999999999998864

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.40  E-value=0.00085  Score=50.56  Aligned_cols=22  Identities=23%  Similarity=0.259  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .|+++|+||+|||.|++++...
T Consensus        51 ~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          51 NILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHhhc
Confidence            4899999999999999999764

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.35  E-value=0.00091  Score=49.07  Aligned_cols=22  Identities=23%  Similarity=0.114  Sum_probs=19.7

Q ss_pred             EEEECCCCCcHHHHHHHHHhCC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      ++++|++|||||||++.+.+-.
T Consensus        31 ~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          31 ISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHHcCc
Confidence            6899999999999999998753

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.34  E-value=0.00099  Score=46.36  Aligned_cols=25  Identities=20%  Similarity=0.111  Sum_probs=21.7

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhC
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      +++-|+|-|..||||||+++.|...
T Consensus         8 kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           8 QPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHH
Confidence            4577999999999999999998753

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.31  E-value=0.00099  Score=48.75  Aligned_cols=22  Identities=23%  Similarity=0.241  Sum_probs=19.9

Q ss_pred             EEEECCCCCcHHHHHHHHHhCC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      ++++|+.|||||||++.+.+..
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHHCCC
Confidence            6899999999999999998863

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.27  E-value=0.0018  Score=44.88  Aligned_cols=25  Identities=16%  Similarity=-0.028  Sum_probs=21.7

Q ss_pred             cceEEEEECCCCCcHHHHHHHHHhC
Q 028686            2 LFLLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         2 ~~i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .++-|+|.|.+||||||+.+.|...
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHC
Confidence            4678999999999999999988654

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.24  E-value=0.0013  Score=47.75  Aligned_cols=22  Identities=23%  Similarity=0.289  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .++|.|+||+|||++++.+...
T Consensus        45 ~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          45 RATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998764

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.20  E-value=0.0013  Score=46.40  Aligned_cols=20  Identities=20%  Similarity=0.204  Sum_probs=17.6

Q ss_pred             EEEECCCCCcHHHHHHHHHh
Q 028686            6 RIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~   25 (205)
                      |++.|+|||||+|+...|..
T Consensus         6 I~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           6 ITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67779999999999998865

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.20  E-value=0.0013  Score=47.84  Aligned_cols=22  Identities=23%  Similarity=0.209  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .|++.|+||+|||++++.+...
T Consensus        44 giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHHH
Confidence            4899999999999999999864

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.11  E-value=0.0016  Score=46.40  Aligned_cols=22  Identities=18%  Similarity=0.178  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .+++.|++|+||||+++.|+..
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHHH
Confidence            4789999999999999988653

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.11  E-value=0.00091  Score=48.91  Aligned_cols=21  Identities=24%  Similarity=0.124  Sum_probs=17.6

Q ss_pred             EEEECCCCCcHHHHHHHHHhC
Q 028686            6 RIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~   26 (205)
                      +++.|+||+|||++++.+...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            345699999999999998764

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.10  E-value=0.0016  Score=46.55  Aligned_cols=22  Identities=18%  Similarity=0.489  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .+++.|++|+||||+++.++..
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHH
Confidence            3789999999999999999764

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.09  E-value=0.0023  Score=45.12  Aligned_cols=24  Identities=25%  Similarity=0.202  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhCC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      +=|+|.|..||||||+.+.|....
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~G   27 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADLG   27 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEECCCcCCHHHHHHHHHHCC
Confidence            448899999999999999886543

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.08  E-value=0.0014  Score=47.57  Aligned_cols=21  Identities=14%  Similarity=0.156  Sum_probs=18.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHh
Q 028686            5 LRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~   25 (205)
                      -|+|.|++|+|||||+++++.
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            367889999999999999875

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.04  E-value=0.0017  Score=47.45  Aligned_cols=22  Identities=18%  Similarity=0.167  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .+++.|+||+|||++++.+...
T Consensus        47 ~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          47 GVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEeeCCCCCCccHHHHHHHHH
Confidence            4899999999999999999863

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.03  E-value=0.0018  Score=45.76  Aligned_cols=22  Identities=23%  Similarity=0.188  Sum_probs=19.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      +=|.+.|.||||||||.+.|..
T Consensus        25 ~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          25 LTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999999864

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.01  E-value=0.0018  Score=46.04  Aligned_cols=22  Identities=14%  Similarity=0.430  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .+++.|++|+||||++..++..
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            4789999999999999999864

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.01  E-value=0.0015  Score=47.17  Aligned_cols=22  Identities=14%  Similarity=0.305  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .+++.|++|+||||++..++..
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            4789999999999999998764

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.00  E-value=0.0019  Score=47.30  Aligned_cols=22  Identities=14%  Similarity=0.238  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .|++.|+||+|||++++.+...
T Consensus        40 giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          40 GILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eeEEecCCCCCchHHHHHHHHH
Confidence            5899999999999999999874

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.98  E-value=0.0022  Score=44.84  Aligned_cols=21  Identities=29%  Similarity=0.308  Sum_probs=18.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHh
Q 028686            5 LRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~   25 (205)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.91  E-value=0.0018  Score=51.13  Aligned_cols=23  Identities=22%  Similarity=0.226  Sum_probs=20.4

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      +-+|+++|++|||||-|+++|..
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cccEEEECCCCCCHHHHHHHHHH
Confidence            34799999999999999999965

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.74  E-value=0.0025  Score=46.76  Aligned_cols=23  Identities=17%  Similarity=0.340  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      -|++.|++|+|||+|++.++..-
T Consensus        43 giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          43 GVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             EEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             eEEEECCCCCcchhHHHHHHHHh
Confidence            48999999999999999998753

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.55  E-value=0.0023  Score=49.66  Aligned_cols=20  Identities=20%  Similarity=0.399  Sum_probs=17.3

Q ss_pred             EEEEECCCCCcHHHHHHHHH
Q 028686            5 LRIYFERGGVGKSCLLLRFS   24 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~   24 (205)
                      +++++|+||||||++++.|.
T Consensus        45 n~llvG~~GvGKtaiv~~la   64 (387)
T d1qvra2          45 NPVLIGEPGVGKTAIVEGLA   64 (387)
T ss_dssp             CCEEEECTTSCHHHHHHHHH
T ss_pred             CCeEECCCCCCHHHHHHHHH
Confidence            57999999999999986554

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.50  E-value=0.0063  Score=42.60  Aligned_cols=22  Identities=23%  Similarity=0.211  Sum_probs=19.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      +=|+|.|..||||||+.+.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999998854

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=95.38  E-value=0.0048  Score=46.23  Aligned_cols=23  Identities=17%  Similarity=-0.025  Sum_probs=20.0

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      ++=|+|.|++|||||||.+.|..
T Consensus        80 P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          80 PYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEEeCCCCCCCcHHHHHHHH
Confidence            57799999999999999888754

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=95.31  E-value=0.0036  Score=47.46  Aligned_cols=26  Identities=23%  Similarity=0.110  Sum_probs=23.5

Q ss_pred             CcceEEEEECCCCCcHHHHHHHHHhC
Q 028686            1 MLFLLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         1 ~~~i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      |..++|+|=|.-||||||+++.|...
T Consensus         3 m~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           3 MGVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHH
Confidence            66789999999999999999999764

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.27  E-value=0.0052  Score=42.70  Aligned_cols=22  Identities=14%  Similarity=0.072  Sum_probs=19.1

Q ss_pred             EEEECCCCCcHHHHHHHHHhCC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      +.|.|+||+|||+|...|+.+-
T Consensus        26 ~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          26 TEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHH
Confidence            5789999999999999987643

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.25  E-value=0.0052  Score=45.28  Aligned_cols=22  Identities=23%  Similarity=0.285  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      -|+|.|++|+|||||+..+.+.
T Consensus        46 ~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          46 FLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            3679999999999999998764

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.25  E-value=0.0048  Score=43.30  Aligned_cols=20  Identities=15%  Similarity=0.056  Sum_probs=17.7

Q ss_pred             EEEECCCCCcHHHHHHHHHh
Q 028686            6 RIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~   25 (205)
                      |+|-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67889999999999998864

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.16  E-value=0.0071  Score=44.78  Aligned_cols=22  Identities=23%  Similarity=0.262  Sum_probs=18.9

Q ss_pred             ceEEEEECCCCCcHHHHHHHHH
Q 028686            3 FLLRIYFERGGVGKSCLLLRFS   24 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~   24 (205)
                      ++=|+|-|.+|||||||...|.
T Consensus        27 P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          27 PLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEeECCCCCCHHHHHHHHH
Confidence            5678999999999999987763

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.15  E-value=0.0068  Score=41.53  Aligned_cols=23  Identities=26%  Similarity=0.219  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      -|++.|++|+||||+.-.|....
T Consensus        16 gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          16 GVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHcC
Confidence            47899999999999999988754

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.12  E-value=0.0059  Score=46.86  Aligned_cols=21  Identities=14%  Similarity=0.166  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHh
Q 028686            5 LRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~   25 (205)
                      -+++.|+||+|||+|.+.+++
T Consensus       156 ~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         156 YWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999876

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.08  E-value=0.0036  Score=47.31  Aligned_cols=21  Identities=24%  Similarity=0.301  Sum_probs=18.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHh
Q 028686            5 LRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~   25 (205)
                      .|++.|+||+|||+|++++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            489999999999999999864

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.93  E-value=0.0064  Score=43.17  Aligned_cols=21  Identities=24%  Similarity=0.107  Sum_probs=18.6

Q ss_pred             EEEECCCCCcHHHHHHHHHhC
Q 028686            6 RIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~   26 (205)
                      +.|.|+||+|||+|...|+..
T Consensus        37 ~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          37 TELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EEEEESTTSSHHHHHHHHTTT
T ss_pred             EEEEcCCCCCHHHHHHHHHHH
Confidence            678899999999999998754

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.87  E-value=0.0069  Score=43.34  Aligned_cols=22  Identities=23%  Similarity=0.128  Sum_probs=19.1

Q ss_pred             EEEECCCCCcHHHHHHHHHhCC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      ++|.|+||+|||+|...++..-
T Consensus        39 ~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          39 TEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Confidence            6789999999999999987644

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.87  E-value=0.005  Score=43.86  Aligned_cols=21  Identities=14%  Similarity=-0.035  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHh
Q 028686            5 LRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~   25 (205)
                      .|+|-|..||||||+++.|..
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478899999999999998865

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.86  E-value=0.008  Score=42.47  Aligned_cols=21  Identities=24%  Similarity=0.328  Sum_probs=19.2

Q ss_pred             EEEECCCCCcHHHHHHHHHhC
Q 028686            6 RIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~   26 (205)
                      +.+.|++|+|||.|++.+++.
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            689999999999999999775

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.84  E-value=0.0075  Score=42.47  Aligned_cols=28  Identities=18%  Similarity=0.116  Sum_probs=20.2

Q ss_pred             cEEEEcCCCCCCHHHHHHHHHHHHHHHhcc
Q 028686          142 KFFETSAKTNLNVEQVFFSIARDIKQRLAD  171 (205)
Q Consensus       142 ~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~~  171 (205)
                      .++.+.+.  ..++++.+.|...+.+....
T Consensus       171 ~~~~IDa~--~~~e~V~~~I~~~v~~~l~~  198 (209)
T d1nn5a_         171 NWKMVDAS--KSIEAVHEDIRVLSEDAIAT  198 (209)
T ss_dssp             CEEEEETT--SCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECC--CCHHHHHHHHHHHHHHHHHh
Confidence            46666653  47999988888887777654

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=94.81  E-value=0.0084  Score=41.08  Aligned_cols=23  Identities=26%  Similarity=0.297  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      =|++.|++|+||||+.-.|....
T Consensus        17 gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          17 GVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             EEEEEESSSSSHHHHHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHcC
Confidence            47899999999999999998754

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.78  E-value=0.0043  Score=46.01  Aligned_cols=20  Identities=20%  Similarity=0.218  Sum_probs=15.1

Q ss_pred             EEEECCCCCcHHHHHHHHHh
Q 028686            6 RIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~   25 (205)
                      |+|.|.+||||||+.++|..
T Consensus         7 IgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           7 ISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             EEEESCC---CCTHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            89999999999999998754

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.65  E-value=0.01  Score=44.62  Aligned_cols=21  Identities=24%  Similarity=0.377  Sum_probs=17.7

Q ss_pred             EEEECCCCCcHHHHHHHHHhC
Q 028686            6 RIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~   26 (205)
                      +++.|+||+|||.|++.|...
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            345799999999999999764

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.58  E-value=0.011  Score=40.27  Aligned_cols=23  Identities=22%  Similarity=0.198  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      -|++.|++|+||||+.-.|+...
T Consensus        17 gvli~G~sg~GKS~la~~l~~~g   39 (169)
T d1ko7a2          17 GVLITGDSGIGKSETALELIKRG   39 (169)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHcC
Confidence            47999999999999998888764

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.48  E-value=0.0097  Score=42.37  Aligned_cols=22  Identities=27%  Similarity=0.459  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      -++|.|+||+|||+|+.+++.+
T Consensus        28 l~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            3688999999999999998765

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.45  E-value=0.011  Score=44.33  Aligned_cols=22  Identities=23%  Similarity=0.377  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .++++|++|+|||.|+..|...
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~   75 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKA   75 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHhh
Confidence            4789999999999999998653

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=94.30  E-value=0.011  Score=45.27  Aligned_cols=22  Identities=14%  Similarity=0.188  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      -+++++|++|||||-|.++|..
T Consensus        69 ~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          69 SNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             cceeeeCCCCccHHHHHHHHHh
Confidence            3589999999999999999865

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=94.28  E-value=0.0028  Score=43.62  Aligned_cols=18  Identities=28%  Similarity=0.355  Sum_probs=16.1

Q ss_pred             EEECCCCCcHHHHHHHHH
Q 028686            7 IYFERGGVGKSCLLLRFS   24 (205)
Q Consensus         7 ~v~G~~~~GKtsli~~l~   24 (205)
                      +|+|+.||||||++.+|.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            467999999999999984

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.23  E-value=0.012  Score=41.71  Aligned_cols=21  Identities=14%  Similarity=0.104  Sum_probs=18.5

Q ss_pred             EEEECCCCCcHHHHHHHHHhC
Q 028686            6 RIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~   26 (205)
                      ++|.|+||+|||+|+..++.+
T Consensus        37 ~~i~G~~G~GKT~~~l~~a~~   57 (258)
T d2i1qa2          37 TEFAGVFGSGKTQIMHQSCVN   57 (258)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHH
Confidence            678899999999999998754

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.02  E-value=0.015  Score=41.36  Aligned_cols=21  Identities=19%  Similarity=0.036  Sum_probs=18.8

Q ss_pred             EEEECCCCCcHHHHHHHHHhC
Q 028686            6 RIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~   26 (205)
                      ++|.|+||+|||+|...++..
T Consensus        40 ~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          40 TEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             EEEECCTTCTHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678999999999999999864

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.95  E-value=0.017  Score=41.30  Aligned_cols=20  Identities=20%  Similarity=0.393  Sum_probs=17.7

Q ss_pred             EEEECCCCCcHHHHHHHHHh
Q 028686            6 RIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~   25 (205)
                      +++.|++|+|||++++.+..
T Consensus        37 ~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          37 YLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            68889999999999998754

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.93  E-value=0.017  Score=40.38  Aligned_cols=20  Identities=20%  Similarity=0.333  Sum_probs=18.2

Q ss_pred             EEEECCCCCcHHHHHHHHHh
Q 028686            6 RIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~   25 (205)
                      +++.|++|+||||++..+..
T Consensus        27 lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          27 LLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999998765

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.91  E-value=0.015  Score=41.34  Aligned_cols=21  Identities=19%  Similarity=0.051  Sum_probs=18.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHh
Q 028686            5 LRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~   25 (205)
                      -|+|=|..||||||+++.|..
T Consensus         4 ~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            578889999999999999975

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=93.76  E-value=0.021  Score=43.07  Aligned_cols=24  Identities=17%  Similarity=0.019  Sum_probs=21.5

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHhC
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .++|+|=|.-|+||||+++.|...
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             eEEEEEECCccCCHHHHHHHHHHH
Confidence            478999999999999999999764

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=93.63  E-value=0.016  Score=40.39  Aligned_cols=22  Identities=18%  Similarity=0.229  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      -+++.|++++|||.|++.|+.-
T Consensus        55 ~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          55 CLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHHH
Confidence            3689999999999999988663

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.57  E-value=0.019  Score=40.31  Aligned_cols=20  Identities=20%  Similarity=0.348  Sum_probs=17.1

Q ss_pred             EEEECCCCCcHHHHHHHHHh
Q 028686            6 RIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~   25 (205)
                      +.|.|+||+|||+|...++.
T Consensus        29 ~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          29 TLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            57889999999999877654

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.46  E-value=0.021  Score=40.16  Aligned_cols=20  Identities=10%  Similarity=-0.084  Sum_probs=18.0

Q ss_pred             EEEECCCCCcHHHHHHHHHh
Q 028686            6 RIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~   25 (205)
                      |+|=|..||||||+++.|..
T Consensus         6 I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78899999999999998864

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=93.45  E-value=0.022  Score=44.17  Aligned_cols=21  Identities=24%  Similarity=0.102  Sum_probs=19.4

Q ss_pred             EEEECCCCCcHHHHHHHHHhC
Q 028686            6 RIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~   26 (205)
                      |+|.|+.||||||.++.++..
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhhh
Confidence            789999999999999999874

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.35  E-value=0.015  Score=42.92  Aligned_cols=18  Identities=22%  Similarity=0.283  Sum_probs=16.3

Q ss_pred             EEECCCCCcHHHHHHHHH
Q 028686            7 IYFERGGVGKSCLLLRFS   24 (205)
Q Consensus         7 ~v~G~~~~GKtsli~~l~   24 (205)
                      +++|+.|||||+++.++.
T Consensus        28 vlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEECCTTTCSTHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHH
Confidence            688999999999999883

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=93.25  E-value=0.025  Score=41.07  Aligned_cols=70  Identities=9%  Similarity=0.079  Sum_probs=34.4

Q ss_pred             EEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEE--EeCCCCCCCCCcc------CHHHHHHHHHHhCCcEEEEcCCC
Q 028686           79 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV--GNKADMDESKRAV------PTSKGQALADEYGIKFFETSAKT  150 (205)
Q Consensus        79 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv--~nK~Dl~~~~~~~------~~~~~~~~~~~~~~~~~~~Sa~~  150 (205)
                      .+++++.........+..........  .++.++||  ++..+-.......      ....+..++.+++++++.++-.+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~~  197 (277)
T d1cr2a_         120 TFHLYDSFAEAETDRLLAKLAYMRSG--LGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK  197 (277)
T ss_dssp             CEEEECCC-CCCHHHHHHHHHHHHHT--TCCSEEEEEEEEC----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred             eeeeeccccchhHHHHHHHhhhhhhc--cCcceEEEcccccccccccccchhHHHHHHHHHHHHHhhhccccceeecccc
Confidence            45566655444555555444444433  34566666  3444321111111      12446677888899988887554

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=93.18  E-value=0.027  Score=40.03  Aligned_cols=20  Identities=10%  Similarity=-0.162  Sum_probs=18.2

Q ss_pred             EEEECCCCCcHHHHHHHHHh
Q 028686            6 RIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~   25 (205)
                      |+|.|..||||||+.+.|..
T Consensus         4 IgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           4 IFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            68999999999999998855

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=93.14  E-value=0.026  Score=42.50  Aligned_cols=22  Identities=18%  Similarity=0.064  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      ++|+|=|.-||||||+++.|..
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC
T ss_pred             eEEEEECCcCCCHHHHHHHHHH
Confidence            6799999999999999999864

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=92.94  E-value=0.02  Score=42.07  Aligned_cols=15  Identities=20%  Similarity=0.452  Sum_probs=12.9

Q ss_pred             EEEECCCCCcHHHHH
Q 028686            6 RIYFERGGVGKSCLL   20 (205)
Q Consensus         6 i~v~G~~~~GKtsli   20 (205)
                      ++|+|.||+||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            678999999999753

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.68  E-value=0.029  Score=43.01  Aligned_cols=18  Identities=28%  Similarity=0.320  Sum_probs=16.4

Q ss_pred             EEECCCCCcHHHHHHHHH
Q 028686            7 IYFERGGVGKSCLLLRFS   24 (205)
Q Consensus         7 ~v~G~~~~GKtsli~~l~   24 (205)
                      +|+|+.|+|||+++.++.
T Consensus        29 ~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          29 SIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEECSTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            688999999999999984

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=92.44  E-value=0.034  Score=40.20  Aligned_cols=20  Identities=35%  Similarity=0.552  Sum_probs=17.1

Q ss_pred             EEEECCCCCcHHHHHHHHHh
Q 028686            6 RIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~   25 (205)
                      .+|.|++|+|||+|+-.|..
T Consensus        32 ~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            56899999999999987753

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=92.38  E-value=0.038  Score=40.68  Aligned_cols=22  Identities=18%  Similarity=0.244  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      |++++|++|+|||+|+..+..+
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHHH
Confidence            7899999999999999988764

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=92.37  E-value=0.027  Score=41.74  Aligned_cols=15  Identities=27%  Similarity=0.479  Sum_probs=13.0

Q ss_pred             EEEECCCCCcHHHHH
Q 028686            6 RIYFERGGVGKSCLL   20 (205)
Q Consensus         6 i~v~G~~~~GKtsli   20 (205)
                      ++|.|.+||||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            688999999999754

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=91.78  E-value=0.045  Score=40.85  Aligned_cols=21  Identities=24%  Similarity=0.373  Sum_probs=18.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHh
Q 028686            5 LRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~   25 (205)
                      .++++|++|+|||.+++.|..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHH
Confidence            467889999999999998854

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=91.53  E-value=0.047  Score=42.24  Aligned_cols=22  Identities=27%  Similarity=0.244  Sum_probs=18.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .++|+|.+|+|||+++..++..
T Consensus        52 H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          52 HLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             CEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEeCCCCcHHHHHHHHHHH
Confidence            4899999999999998877643

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=91.45  E-value=0.06  Score=39.19  Aligned_cols=22  Identities=14%  Similarity=0.128  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      -+.+.|++++|||+|++.+...
T Consensus       106 ~~~l~G~~~tGKS~f~~~i~~~  127 (267)
T d1u0ja_         106 TIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4678899999999999998763

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.40  E-value=0.048  Score=37.23  Aligned_cols=22  Identities=14%  Similarity=-0.019  Sum_probs=19.3

Q ss_pred             EEEECCCCCcHHHHHHHHHhCC
Q 028686            6 RIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      |+|+|...||||.+..++....
T Consensus         2 iLVtGGarSGKS~~AE~l~~~~   23 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGDA   23 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCSC
T ss_pred             EEEECCCCccHHHHHHHHHhcC
Confidence            6899999999999999997543

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.16  E-value=1  Score=30.91  Aligned_cols=76  Identities=12%  Similarity=0.136  Sum_probs=48.9

Q ss_pred             EEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCCCCccCHH
Q 028686           52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKV-LVGNKADMDESKRAVPTS  130 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-iv~nK~Dl~~~~~~~~~~  130 (205)
                      +.+.++|+++....  .....+..+|.++++...+ ..++..+....+.+.+   .++|++ +|.|+.+..+  ..+..+
T Consensus       112 ~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~---~~~~~~giv~N~~~~~~--~~~~~~  183 (237)
T d1g3qa_         112 FDFILIDCPAGLQL--DAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKK---AGLAILGFVLNRYGRSD--RDIPPE  183 (237)
T ss_dssp             CSEEEEECCSSSSH--HHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHH---TTCEEEEEEEEEETSCT--TCCCHH
T ss_pred             CCEEEEcccccccc--cchhhhhhhhccccccccc-ceecchhhHHHHHHhh---hhhhhhhhhhccccccc--chhhhH
Confidence            46889999876432  2333456799998887764 5667777666666654   457766 8899998543  334444


Q ss_pred             HHHHH
Q 028686          131 KGQAL  135 (205)
Q Consensus       131 ~~~~~  135 (205)
                      ..+++
T Consensus       184 ~~~~~  188 (237)
T d1g3qa_         184 AAEDV  188 (237)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            44433

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=90.92  E-value=0.067  Score=40.66  Aligned_cols=18  Identities=17%  Similarity=0.324  Sum_probs=15.0

Q ss_pred             EEEECCCCCcHHHHHHHH
Q 028686            6 RIYFERGGVGKSCLLLRF   23 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l   23 (205)
                      .+|.|+||+|||+++..+
T Consensus       166 ~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         166 SVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEECCTTSTHHHHHHHH
T ss_pred             EEEEcCCCCCceehHHHH
Confidence            578899999999987553

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=90.55  E-value=0.72  Score=30.08  Aligned_cols=50  Identities=22%  Similarity=0.225  Sum_probs=29.0

Q ss_pred             hhhccCCcEEEEEEeCCChhH----------HHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 028686           70 TAYYRGAMGILLVYDVTDESS----------FNNIRNWIRNIEQHASDNVNKVLVGNKAD  119 (205)
Q Consensus        70 ~~~~~~~d~~i~v~d~~~~~s----------~~~~~~~~~~i~~~~~~~~piiiv~nK~D  119 (205)
                      ...++++|++++.......+.          ..-+..+.+.+.++..++.-++++.|-.|
T Consensus        75 ~~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvD  134 (154)
T d1y7ta1          75 KVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPAN  134 (154)
T ss_dssp             HHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             hhhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHH
Confidence            445678998888876543211          12233455566665544555666677666

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.93  E-value=0.12  Score=32.60  Aligned_cols=22  Identities=9%  Similarity=-0.007  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHh
Q 028686            4 LLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      +-|.+.|.+|+||+++.+.|..
T Consensus         7 f~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           7 FSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             EEEEECTTCCSCHHHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHH
Confidence            6789999999999999999854

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.88  E-value=0.077  Score=38.73  Aligned_cols=22  Identities=27%  Similarity=0.468  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      |++++|++|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            6899999999999999888764

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=88.50  E-value=0.14  Score=36.98  Aligned_cols=21  Identities=19%  Similarity=0.226  Sum_probs=17.9

Q ss_pred             EEEECCCCCcHHHHHHHHHhC
Q 028686            6 RIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~   26 (205)
                      +.|.|++++|||+|.-.++..
T Consensus        57 tei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          57 VEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHHH
Confidence            568899999999998887654

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=88.32  E-value=2.2  Score=28.34  Aligned_cols=100  Identities=15%  Similarity=0.152  Sum_probs=55.3

Q ss_pred             cceEEEEECC-CCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh----------------
Q 028686            2 LFLLRIYFER-GGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------------   64 (205)
Q Consensus         2 ~~i~i~v~G~-~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------------   64 (205)
                      +.+||+|+|. .+.|-+ |+..|..+..-...                 ..+.+++.|.+....                
T Consensus        23 ~~~kV~I~GA~G~Ig~~-l~~~La~g~v~g~~-----------------~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~   84 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNH-LLFKLASGEVFGQD-----------------QPIALKLLGSERSFQALEGVAMELEDSLYPL   84 (175)
T ss_dssp             CCEEEEEETTTSHHHHH-HHHHHHHTTTTCTT-----------------CCEEEEEECCGGGHHHHHHHHHHHHTTTCTT
T ss_pred             CCcEEEEECCCcHHHHH-HHHHHHcCcccCCC-----------------ceEEEEEecCccccchhcchhhhhccccccc
Confidence            4689999996 667755 45566665431111                 113455566654211                


Q ss_pred             -----hhhhhhhhccCCcEEEEEEeCCChh--HHHH--------HHHHHHHHHhhcCCCCcEEEEEeCCC
Q 028686           65 -----FRTITTAYYRGAMGILLVYDVTDES--SFNN--------IRNWIRNIEQHASDNVNKVLVGNKAD  119 (205)
Q Consensus        65 -----~~~~~~~~~~~~d~~i~v~d~~~~~--s~~~--------~~~~~~~i~~~~~~~~piiiv~nK~D  119 (205)
                           ...-....+.++|++|++.......  +-.+        +..+.+.+.++..++.-+++++|=.|
T Consensus        85 ~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd  154 (175)
T d7mdha1          85 LREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCN  154 (175)
T ss_dssp             EEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             ccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHH
Confidence                 0011233467899888887655422  1111        23355566666655667777777766

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=88.21  E-value=0.15  Score=36.51  Aligned_cols=23  Identities=17%  Similarity=0.106  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHhC
Q 028686            4 LLRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         4 i~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      .-|+|.|.+|+||+.+.+.+...
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih~~   46 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIHKL   46 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHHHh
Confidence            35799999999999999988653

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.58  E-value=0.62  Score=30.42  Aligned_cols=25  Identities=20%  Similarity=0.190  Sum_probs=18.4

Q ss_pred             cceEEEEECC-CCCcHHHHHHHHHhCC
Q 028686            2 LFLLRIYFER-GGVGKSCLLLRFSDGS   27 (205)
Q Consensus         2 ~~i~i~v~G~-~~~GKtsli~~l~~~~   27 (205)
                      +++||.|+|. .++|.+... .|+.+.
T Consensus         2 ~p~KV~IiGA~G~VG~~la~-~l~~~~   27 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLY-SIGNGS   27 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHH-HHHTTT
T ss_pred             CceEEEEECCCCHHHHHHHH-HHHHHH
Confidence            5789999995 789988654 455543

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=86.33  E-value=0.22  Score=35.67  Aligned_cols=88  Identities=16%  Similarity=0.156  Sum_probs=52.0

Q ss_pred             EEEEEEeCCChhhhhh-hhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcC-CCCcE-EEEEeCCCCCCCCCccC
Q 028686           52 IKLQIWDTAGQERFRT-ITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNK-VLVGNKADMDESKRAVP  128 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~-~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~pi-iiv~nK~Dl~~~~~~~~  128 (205)
                      +.+.++|+|+...... ........+|.++++.+. +..++..+......+..... .+.++ -++.|+.+...     .
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~-----~  189 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN-----E  189 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC-----C
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCC-----c
Confidence            4578889986542222 122223457877777655 56677776666666655432 33443 36789987532     2


Q ss_pred             HHHHHHHHHHhCCcEEE
Q 028686          129 TSKGQALADEYGIKFFE  145 (205)
Q Consensus       129 ~~~~~~~~~~~~~~~~~  145 (205)
                      .+.++.+.+.++.+++.
T Consensus       190 ~~~~~~~~~~~~~~~~~  206 (269)
T d1cp2a_         190 YELLDAFAKELGSQLIH  206 (269)
T ss_dssp             HHHHHHHHHHHTCCEEE
T ss_pred             cchhhhhHhhcCCeEEE
Confidence            45566777778876553

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.14  E-value=0.27  Score=34.78  Aligned_cols=20  Identities=20%  Similarity=-0.009  Sum_probs=17.2

Q ss_pred             EEEECCCCCcHHHHHHHHHh
Q 028686            6 RIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~   25 (205)
                      ++|.|+..+||||+++.+.-
T Consensus        44 ~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHHH
Confidence            57889999999999998743

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=84.72  E-value=0.31  Score=34.26  Aligned_cols=20  Identities=20%  Similarity=0.084  Sum_probs=17.3

Q ss_pred             EEEECCCCCcHHHHHHHHHh
Q 028686            6 RIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~   25 (205)
                      ++|.|+..+||||+++++.-
T Consensus        38 ~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhHH
Confidence            57889999999999998743

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.64  E-value=0.16  Score=37.11  Aligned_cols=22  Identities=9%  Similarity=0.098  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHhC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~   26 (205)
                      |++++|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEeecCCCCChHHHHHHHHHh
Confidence            6789999999999998877654

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=84.54  E-value=0.2  Score=37.00  Aligned_cols=14  Identities=36%  Similarity=0.759  Sum_probs=12.8

Q ss_pred             EEECCCCCcHHHHH
Q 028686            7 IYFERGGVGKSCLL   20 (205)
Q Consensus         7 ~v~G~~~~GKtsli   20 (205)
                      +++|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (313)
T d2olra1          18 VFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEECSTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            68999999999975

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=83.15  E-value=0.22  Score=36.92  Aligned_cols=15  Identities=33%  Similarity=0.696  Sum_probs=13.1

Q ss_pred             EEEECCCCCcHHHHH
Q 028686            6 RIYFERGGVGKSCLL   20 (205)
Q Consensus         6 i~v~G~~~~GKtsli   20 (205)
                      -+++|.+|+|||||.
T Consensus        17 alffGLSGTGKTTLs   31 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEECTTSCHHHHT
T ss_pred             EEEEccCCCCccccc
Confidence            378999999999975

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=82.99  E-value=0.43  Score=32.71  Aligned_cols=23  Identities=4%  Similarity=-0.174  Sum_probs=20.2

Q ss_pred             ceEEEEECCCCCcHHHHHHHHHh
Q 028686            3 FLLRIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         3 ~i~i~v~G~~~~GKtsli~~l~~   25 (205)
                      ...+++.|++|+|||++...+..
T Consensus        15 ~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          15 GISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999998876

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=82.73  E-value=0.26  Score=36.54  Aligned_cols=14  Identities=36%  Similarity=0.759  Sum_probs=12.9

Q ss_pred             EEECCCCCcHHHHH
Q 028686            7 IYFERGGVGKSCLL   20 (205)
Q Consensus         7 ~v~G~~~~GKtsli   20 (205)
                      +++|.+|+|||||.
T Consensus        18 lfFGLSGTGKTTLs   31 (323)
T d1ii2a1          18 VFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEECCTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            68999999999986

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=82.50  E-value=0.41  Score=34.40  Aligned_cols=37  Identities=16%  Similarity=0.221  Sum_probs=23.8

Q ss_pred             EEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcE-EEEEeCC
Q 028686           78 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK-VLVGNKA  118 (205)
Q Consensus        78 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-iiv~nK~  118 (205)
                      .+++|... ++-++.++...++.+...   ++|+ -+|+|+.
T Consensus       200 ~~~lVt~p-e~~~~~~~~r~~~~l~~~---gi~~~~vVvN~v  237 (296)
T d1ihua1         200 RLVLVARL-QKSTLQEVARTHLELAAI---GLKNQYLVINGV  237 (296)
T ss_dssp             EEEEEEES-CHHHHHHHHHHHHHHHHH---TCCCEEEEEEEE
T ss_pred             eeeEecCc-chhHHHHHHHHHHHHHhc---CCCceEEEEcCC
Confidence            45555443 456777777777777654   3565 4778996

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=81.98  E-value=0.45  Score=32.40  Aligned_cols=20  Identities=15%  Similarity=0.022  Sum_probs=16.5

Q ss_pred             EEEEECCC-CCcHHHHHHHHH
Q 028686            5 LRIYFERG-GVGKSCLLLRFS   24 (205)
Q Consensus         5 ~i~v~G~~-~~GKtsli~~l~   24 (205)
                      |+.|.|-. ||||||+.--|.
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La   23 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALL   23 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHH
Confidence            67889995 999999976663

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=81.64  E-value=0.37  Score=30.48  Aligned_cols=20  Identities=20%  Similarity=0.077  Sum_probs=16.0

Q ss_pred             EEEECCCCCcHHHHHHHHHh
Q 028686            6 RIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~   25 (205)
                      .+|.++.|+|||.++-.++.
T Consensus        11 ~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1          11 AHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             EEEECCTTSCTTTHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            46789999999998866544

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=81.42  E-value=0.3  Score=35.52  Aligned_cols=23  Identities=9%  Similarity=0.026  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Q 028686            5 LRIYFERGGVGKSCLLLRFSDGS   27 (205)
Q Consensus         5 ~i~v~G~~~~GKtsli~~l~~~~   27 (205)
                      |++++|.+|+|||+|+..+..+.
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~~~~   91 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTILNQ   91 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHHHTC
T ss_pred             eEeeccCCCCChHHHHHHHHhhh
Confidence            57899999999999988765543

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=81.39  E-value=0.48  Score=33.82  Aligned_cols=18  Identities=28%  Similarity=0.589  Sum_probs=13.6

Q ss_pred             EEEECCCCCcHHHHHHHH
Q 028686            6 RIYFERGGVGKSCLLLRF   23 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l   23 (205)
                      |++.|..|+||||+.-.|
T Consensus        23 ii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          23 IMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            345599999999985554

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.34  E-value=0.49  Score=34.18  Aligned_cols=20  Identities=15%  Similarity=0.145  Sum_probs=16.9

Q ss_pred             EEEECCCCCcHHHHHHHHHh
Q 028686            6 RIYFERGGVGKSCLLLRFSD   25 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~   25 (205)
                      +.+.|++++|||+|.-.++.
T Consensus        63 ~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          63 IEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHH
Confidence            46889999999999877764

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=81.20  E-value=7.1  Score=27.54  Aligned_cols=88  Identities=19%  Similarity=0.213  Sum_probs=48.2

Q ss_pred             EEEEEEeCCChhhhhhhhhhh-ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhc-CCCCcEE-EEEeCCCCCCCCCccC
Q 028686           52 IKLQIWDTAGQERFRTITTAY-YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKV-LVGNKADMDESKRAVP  128 (205)
Q Consensus        52 ~~~~i~D~~g~~~~~~~~~~~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pii-iv~nK~Dl~~~~~~~~  128 (205)
                      +.+.++|+|+..........+ ...++.++++. ..+..++..+......+.... ..+.++. +|.|+.+...     .
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~-~~~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~-----~  192 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVC-SGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDR-----E  192 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEE-CSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTT-----H
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeeccc-chhHHHHHHHHHHHHHHHhhhhcccccccceeehhhcchh-----h
Confidence            457888998654222211111 23466555554 444566666666666664433 2445553 7789876421     2


Q ss_pred             HHHHHHHHHHhCCcEEE
Q 028686          129 TSKGQALADEYGIKFFE  145 (205)
Q Consensus       129 ~~~~~~~~~~~~~~~~~  145 (205)
                      .+....+.+.++.+++.
T Consensus       193 ~~~~~~~~~~~g~~vl~  209 (289)
T d2afhe1         193 DELIIALANKLGTQMIH  209 (289)
T ss_dssp             HHHHHHHHHHHTSCEEE
T ss_pred             HHHHHHHHHHcCCeEEE
Confidence            34456677777766553

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=80.93  E-value=0.46  Score=34.26  Aligned_cols=21  Identities=19%  Similarity=0.189  Sum_probs=17.7

Q ss_pred             EEEECCCCCcHHHHHHHHHhC
Q 028686            6 RIYFERGGVGKSCLLLRFSDG   26 (205)
Q Consensus         6 i~v~G~~~~GKtsli~~l~~~   26 (205)
                      +.+.|++++|||+|...++..
T Consensus        60 tei~G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          60 TEIYGPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEecCCccchHHHHHHHHHH
Confidence            468899999999999887653