Citrus Sinensis ID: 028703

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-----
MNVKLQLLALIAKQPAFHQLRTVEQLGYITALLQRNDFGIHGVQFIIQSSVKGPKYIDLRVESFLQMFESKLYEMTSDQFKNNVNALIDMKLEKHKNLKEESGFYWREISDGILKFDRREVEVAALRQLTQQELIYFFNENIKAGAPRKKTLSVRVYGSLHAPELKEETSESADPHIVHIDDIFSFRRSQPLYGSFKGGFVQMKL
cHHHHHHHHHHHcHHHHHHHHHHHccccEEEEEEEEEcccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHcccHHHHHHHHHHHHcccccccEEEEEEEEEcccccccccccccccccccEEEccHHHHHHccccccccccccccccc
ccHHHHHHHHHHccccHHHHcHHHHccEEEEcccccccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHccHHHHHHHHHHHHccccccccEEEEEEEccccccccccccccccccccEEEccHHHHHHccccccccccccccEcc
MNVKLQLLALIAKQPAFHQLRTVEQLGYITALLQRNDFGIHGVQFIIQssvkgpkyIDLRVESFLQMFESKLYEMTSDQFKNNVNALIDMKLEKhknlkeesgFYWREISDGILKFDRREVEVAALRQLTQQELIYFFNEnikagaprkktLSVRVYgslhapelkeetsesadphivhiddifsfrrsqplygsfkggfvqmkl
MNVKLQLLALIAKQPAFHQLRTVEQLGYITALLQRNDFGIHGVQFIIQSSVKGPKYIDLRVESFLQMFESKLYEMTSDQFKNNVNALIDMKLEKhknlkeesgfyWREISDGILKFDRREVEVAALRQLTQQELIYFFNenikagaprkktLSVRVYGSLHAPelkeetsesadphIVHIDDIFSFRRSQPlygsfkggfvqmkl
MNVKLQLLALIAKQPAFHQLRTVEQLGYITALLQRNDFGIHGVQFIIQSSVKGPKYIDLRVESFLQMFESKLYEMTSDQFKNNVNALIDMKLEKHKNLKEESGFYWREISDGILKFDRREVEVAALRQLTQQELIYFFNENIKAGAPRKKTLSVRVYGSLHAPELKEETSESADPHIVHIDDIFSFRRSQPLYGSFKGGFVQMKL
****LQLLALIAKQPAFHQLRTVEQLGYITALLQRNDFGIHGVQFIIQSSVKGPKYIDLRVESFLQMFESKLYEMTSDQFKNNVNALIDMKLEKHKNLKEESGFYWREISDGILKFDRREVEVAALRQLTQQELIYFFNENIKAGAPRKKTLSVRVYGSL***************HIVHIDDIFSFRRSQPLYGSFKGGF*****
MNVKLQLLALIAKQPAFHQLRTVEQLGYITALLQRNDFGIHGVQFIIQSSVKGPKYIDLRVESFLQMFESKLYEMTSDQFKNNVNALIDMKLEKHKNLKEESGFYWREISDGILKFDRREVEVAALRQLTQQELIYFFNENIKAGAPRKKTLSV***********************VHIDDIFSFRRSQPLYGSFKGGF**M**
MNVKLQLLALIAKQPAFHQLRTVEQLGYITALLQRNDFGIHGVQFIIQSSVKGPKYIDLRVESFLQMFESKLYEMTSDQFKNNVNALIDMKLEKHKNLKEESGFYWREISDGILKFDRREVEVAALRQLTQQELIYFFNENIKAGAPRKKTLSVRVYGSLHAPE*********DPHIVHIDDIFSFRRSQPLYGSFKGGFVQMKL
MNVKLQLLALIAKQPAFHQLRTVEQLGYITALLQRNDFGIHGVQFIIQSSVKGPKYIDLRVESFLQMFESKLYEMTSDQFKNNVNALIDMKLEKHKNLKEESGFYWREISDGILKFDRREVEVAALRQLTQQELIYFFNENIKAGAPRKKTLSVRVYGSL**************PHIVHIDDIFSFRRSQPLYGSFKGGFVQMK*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNVKLQLLALIAKQPAFHQLRTVEQLGYITALLQRNDFGIHGVQFIIQSSVKGPKYIDLRVESFLQMFESKLYEMTSDQFxxxxxxxxxxxxxxxxxxxxxSGFYWREISDGILKFDRREVEVAALRQLTQQELIYFFNENIKAGAPRKKTLSVRVYGSLHAPELKEETSESADPHIVHIDDIFSFRRSQPLYGSFKGGFVQMKL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query205 2.2.26 [Sep-21-2011]
O22941970 Zinc-metallopeptidase, pe yes no 0.960 0.203 0.696 1e-74
Q24K021019 Insulin-degrading enzyme yes no 0.751 0.151 0.419 2e-26
Q9JHR71019 Insulin-degrading enzyme yes no 0.921 0.185 0.357 3e-26
P147351019 Insulin-degrading enzyme no no 0.751 0.151 0.419 5e-26
P355591019 Insulin-degrading enzyme yes no 0.921 0.185 0.352 8e-26
O14077969 Putative zinc protease mu yes no 0.707 0.149 0.376 6e-20
P22817990 Insulin-degrading enzyme yes no 0.912 0.188 0.301 1e-19
Q8BHG11161 Nardilysin OS=Mus musculu no no 0.736 0.130 0.326 7e-15
P472451161 Nardilysin OS=Rattus norv no no 0.736 0.130 0.326 8e-15
O438471150 Nardilysin OS=Homo sapien no no 0.809 0.144 0.313 2e-14
>sp|O22941|PXM16_ARATH Zinc-metallopeptidase, peroxisomal OS=Arabidopsis thaliana GN=PXM16 PE=2 SV=1 Back     alignment and function desciption
 Score =  278 bits (712), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 138/198 (69%), Positives = 161/198 (81%), Gaps = 1/198 (0%)

Query: 1   MNVKLQLLALIAKQPAFHQLRTVEQLGYITALLQRNDFGIHGVQFIIQSSVKGPKYIDLR 60
           MN+KLQL  L+AKQ  FHQLRTVEQLGYITAL QRND GI+GVQFIIQSSVKGP +ID R
Sbjct: 768 MNIKLQLFGLVAKQATFHQLRTVEQLGYITALAQRNDSGIYGVQFIIQSSVKGPGHIDSR 827

Query: 61  VESFLQMFESKLYEMTSDQFKNNVNALIDMKLEKHKNLKEESGFYWREISDGILKFDRRE 120
           VES L+ FESKLYEM+++ FK+NV ALIDMKLEKHKNLKEES FYWREI  G LKF+R+E
Sbjct: 828 VESLLKNFESKLYEMSNEDFKSNVTALIDMKLEKHKNLKEESRFYWREIQSGTLKFNRKE 887

Query: 121 VEVAALRQLTQQELIYFFNENIKAGAPRKKTLSVRVYGSLHAPELKEETSESADPHIVHI 180
            EV+AL+QL +QELI FF+E IK GA RKK+LS+RVYGS H  E+  +  E   P  V I
Sbjct: 888 AEVSALKQLQKQELIDFFDEYIKVGAARKKSLSIRVYGSQHLKEMASDKDEVPSPS-VEI 946

Query: 181 DDIFSFRRSQPLYGSFKG 198
           +DI  FR+SQPL+GSF+G
Sbjct: 947 EDIVGFRKSQPLHGSFRG 964
Peptidase that might be involved in pathogen or wound response. Not required for peroxisome biogenesis, indole-3-butyric acid (IBA) metabolism, fatty acid beta-oxidation or degradation of glyoxylate cycle enzymes during seedling development.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: -
>sp|Q24K02|IDE_BOVIN Insulin-degrading enzyme OS=Bos taurus GN=IDE PE=2 SV=1 Back     alignment and function description
>sp|Q9JHR7|IDE_MOUSE Insulin-degrading enzyme OS=Mus musculus GN=Ide PE=1 SV=1 Back     alignment and function description
>sp|P14735|IDE_HUMAN Insulin-degrading enzyme OS=Homo sapiens GN=IDE PE=1 SV=4 Back     alignment and function description
>sp|P35559|IDE_RAT Insulin-degrading enzyme OS=Rattus norvegicus GN=Ide PE=1 SV=1 Back     alignment and function description
>sp|O14077|MU138_SCHPO Putative zinc protease mug138 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug138 PE=1 SV=1 Back     alignment and function description
>sp|P22817|IDE_DROME Insulin-degrading enzyme OS=Drosophila melanogaster GN=Ide PE=1 SV=4 Back     alignment and function description
>sp|Q8BHG1|NRDC_MOUSE Nardilysin OS=Mus musculus GN=Nrd1 PE=1 SV=1 Back     alignment and function description
>sp|P47245|NRDC_RAT Nardilysin OS=Rattus norvegicus GN=Nrd1 PE=2 SV=1 Back     alignment and function description
>sp|O43847|NRDC_HUMAN Nardilysin OS=Homo sapiens GN=NRD1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query205
224087014 949 predicted protein [Populus trichocarpa] 0.995 0.214 0.769 1e-87
255582581 967 Insulin-degrading enzyme, putative [Rici 1.0 0.211 0.741 3e-85
225441825 965 PREDICTED: zinc-metallopeptidase, peroxi 0.995 0.211 0.759 5e-84
350535204 971 insulin degrading enzyme [Solanum lycope 1.0 0.211 0.721 2e-83
225441823 965 PREDICTED: zinc-metallopeptidase, peroxi 0.995 0.211 0.725 4e-80
356504785 964 PREDICTED: zinc-metallopeptidase, peroxi 0.985 0.209 0.717 6e-79
449437948 952 PREDICTED: LOW QUALITY PROTEIN: zinc-met 0.985 0.212 0.707 4e-77
449519440 897 PREDICTED: zinc-metallopeptidase, peroxi 0.985 0.225 0.707 4e-77
356572034 964 PREDICTED: zinc-metallopeptidase, peroxi 0.985 0.209 0.697 9e-76
449437946 929 PREDICTED: LOW QUALITY PROTEIN: zinc-met 0.985 0.217 0.702 3e-75
>gi|224087014|ref|XP_002308028.1| predicted protein [Populus trichocarpa] gi|222854004|gb|EEE91551.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  328 bits (840), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 157/204 (76%), Positives = 180/204 (88%)

Query: 2   NVKLQLLALIAKQPAFHQLRTVEQLGYITALLQRNDFGIHGVQFIIQSSVKGPKYIDLRV 61
           NVKLQLLALIAKQPAFHQLR+VEQLGYIT L+QRND GI G+QFIIQS+VKGP  IDLRV
Sbjct: 746 NVKLQLLALIAKQPAFHQLRSVEQLGYITVLMQRNDSGIRGLQFIIQSTVKGPGQIDLRV 805

Query: 62  ESFLQMFESKLYEMTSDQFKNNVNALIDMKLEKHKNLKEESGFYWREISDGILKFDRREV 121
           E+FL+MFE+KLY MT+D+FK+NVNALIDMKLEKHKNL+EES F+WREISDG LKFDRRE 
Sbjct: 806 EAFLKMFETKLYGMTNDEFKSNVNALIDMKLEKHKNLREESAFFWREISDGTLKFDRREC 865

Query: 122 EVAALRQLTQQELIYFFNENIKAGAPRKKTLSVRVYGSLHAPELKEETSESADPHIVHID 181
           EVAAL+QLTQQ+LI FF+E++K GAPRK+TLSVRVYG LH+ E   + S+   P+ V I+
Sbjct: 866 EVAALKQLTQQDLIDFFDEHVKVGAPRKRTLSVRVYGKLHSCEYPSDKSQQLPPNAVQIE 925

Query: 182 DIFSFRRSQPLYGSFKGGFVQMKL 205
           DIFSFRRSQPLYGSFKGGF  MKL
Sbjct: 926 DIFSFRRSQPLYGSFKGGFGHMKL 949

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255582581|ref|XP_002532073.1| Insulin-degrading enzyme, putative [Ricinus communis] gi|223528255|gb|EEF30307.1| Insulin-degrading enzyme, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225441825|ref|XP_002283993.1| PREDICTED: zinc-metallopeptidase, peroxisomal [Vitis vinifera] gi|297739661|emb|CBI29843.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|350535204|ref|NP_001233926.1| insulin degrading enzyme [Solanum lycopersicum] gi|15485612|emb|CAC67408.1| insulin degrading enzyme [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|225441823|ref|XP_002283970.1| PREDICTED: zinc-metallopeptidase, peroxisomal [Vitis vinifera] gi|297739662|emb|CBI29844.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356504785|ref|XP_003521175.1| PREDICTED: zinc-metallopeptidase, peroxisomal-like [Glycine max] Back     alignment and taxonomy information
>gi|449437948|ref|XP_004136752.1| PREDICTED: LOW QUALITY PROTEIN: zinc-metallopeptidase, peroxisomal-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449519440|ref|XP_004166743.1| PREDICTED: zinc-metallopeptidase, peroxisomal-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356572034|ref|XP_003554175.1| PREDICTED: zinc-metallopeptidase, peroxisomal-like [Glycine max] Back     alignment and taxonomy information
>gi|449437946|ref|XP_004136751.1| PREDICTED: LOW QUALITY PROTEIN: zinc-metallopeptidase, peroxisomal-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query205
TAIR|locus:2054346970 AT2G41790 [Arabidopsis thalian 0.960 0.203 0.696 1.3e-68
TAIR|locus:2103523891 AT3G57470 [Arabidopsis thalian 0.956 0.219 0.609 8e-56
UNIPROTKB|J9NYF5400 IDE "Uncharacterized protein" 0.751 0.385 0.419 5.2e-26
UNIPROTKB|Q24K021019 IDE "Insulin-degrading enzyme" 0.751 0.151 0.419 4.6e-25
UNIPROTKB|F1P6U4902 IDE "Uncharacterized protein" 0.751 0.170 0.419 7.8e-25
UNIPROTKB|E2RGZ31019 IDE "Uncharacterized protein" 0.751 0.151 0.419 9.6e-25
UNIPROTKB|P147351019 IDE "Insulin-degrading enzyme" 0.751 0.151 0.419 9.6e-25
MGI|MGI:964121019 Ide "insulin degrading enzyme" 0.980 0.197 0.353 9.6e-25
UNIPROTKB|F1SC98990 IDE "Uncharacterized protein" 0.751 0.155 0.412 1.2e-24
ZFIN|ZDB-GENE-070410-85998 ide "insulin-degrading enzyme" 0.931 0.191 0.351 1.5e-24
TAIR|locus:2054346 AT2G41790 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
 Identities = 138/198 (69%), Positives = 161/198 (81%)

Query:     1 MNVKLQLLALIAKQPAFHQLRTVEQLGYITALLQRNDFGIHGVQFIIQSSVKGPKYIDLR 60
             MN+KLQL  L+AKQ  FHQLRTVEQLGYITAL QRND GI+GVQFIIQSSVKGP +ID R
Sbjct:   768 MNIKLQLFGLVAKQATFHQLRTVEQLGYITALAQRNDSGIYGVQFIIQSSVKGPGHIDSR 827

Query:    61 VESFLQMFESKLYEMTSDQFKNNVNALIDMKLEKHKNLKEESGFYWREISDGILKFDRRE 120
             VES L+ FESKLYEM+++ FK+NV ALIDMKLEKHKNLKEES FYWREI  G LKF+R+E
Sbjct:   828 VESLLKNFESKLYEMSNEDFKSNVTALIDMKLEKHKNLKEESRFYWREIQSGTLKFNRKE 887

Query:   121 VEVAALRQLTQQELIYFFNENIKAGAPRKKTLSVRVYGSLHAPELKEETSESADPHIVHI 180
              EV+AL+QL +QELI FF+E IK GA RKK+LS+RVYGS H  E+  +  E   P  V I
Sbjct:   888 AEVSALKQLQKQELIDFFDEYIKVGAARKKSLSIRVYGSQHLKEMASDKDEVPSPS-VEI 946

Query:   181 DDIFSFRRSQPLYGSFKG 198
             +DI  FR+SQPL+GSF+G
Sbjct:   947 EDIVGFRKSQPLHGSFRG 964
GO:0003824 "catalytic activity" evidence=IEA
GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0008270 "zinc ion binding" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
TAIR|locus:2103523 AT3G57470 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|J9NYF5 IDE "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q24K02 IDE "Insulin-degrading enzyme" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1P6U4 IDE "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E2RGZ3 IDE "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P14735 IDE "Insulin-degrading enzyme" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:96412 Ide "insulin degrading enzyme" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SC98 IDE "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070410-85 ide "insulin-degrading enzyme" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query205
COG1025937 COG1025, Ptr, Secreted/periplasmic Zn-dependent pe 8e-26
PRK15101961 PRK15101, PRK15101, protease3; Provisional 2e-20
>gnl|CDD|223956 COG1025, Ptr, Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
 Score =  103 bits (260), Expect = 8e-26
 Identities = 53/158 (33%), Positives = 81/158 (51%), Gaps = 2/158 (1%)

Query: 7   LLALIAKQPAFHQLRTVEQLGYITALLQRNDFGIHGVQFIIQSSVKGPKYIDLRVESFLQ 66
           LL  +     F QLRT EQLGY      R      G+ F++QS+ K P Y+  R+ +FL+
Sbjct: 758 LLGQLIHPWFFDQLRTKEQLGYAVFSGPREVGRTPGIGFLVQSNSKSPSYLLERINAFLE 817

Query: 67  MFESKLYEMTSDQFKNNVNALIDMKLEKHKNLKEESGFYWREISDGILKFDRREVEVAAL 126
             E +L EM+ + F+    ALI+  L+  +NL EE+   W+    G L FD RE ++ A+
Sbjct: 818 TAEPELREMSEEDFEQIKKALINQILQPPQNLAEEASRLWKAFGRGNLDFDHREKKIEAV 877

Query: 127 RQLTQQELIYFFNENIKAGAPRKKTLSVRVYGSLHAPE 164
           + LT+Q+L+ FF   +     +   L   + G     E
Sbjct: 878 KTLTKQKLLDFFENALS--YEQGSKLLSHIRGQNGEAE 913

Length = 937
>gnl|CDD|185056 PRK15101, PRK15101, protease3; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 205
COG1025937 Ptr Secreted/periplasmic Zn-dependent peptidases, 100.0
KOG0959974 consensus N-arginine dibasic convertase NRD1 and r 100.0
PRK15101961 protease3; Provisional 99.97
TIGR02110696 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe 99.44
PF05193184 Peptidase_M16_C: Peptidase M16 inactive domain; In 98.85
COG0612438 PqqL Predicted Zn-dependent peptidases [General fu 98.71
KOG2067472 consensus Mitochondrial processing peptidase, alph 97.24
COG1026978 Predicted Zn-dependent peptidases, insulinase-like 96.85
PTZ004321119 falcilysin; Provisional 96.75
PRK15101 961 protease3; Provisional 96.54
PTZ00432 1119 falcilysin; Provisional 96.52
TIGR02110 696 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe 95.93
COG0612 438 PqqL Predicted Zn-dependent peptidases [General fu 95.07
KOG0960467 consensus Mitochondrial processing peptidase, beta 94.83
KOG09611022 consensus Predicted Zn2+-dependent endopeptidase, 94.31
KOG0959 974 consensus N-arginine dibasic convertase NRD1 and r 93.66
COG1025 937 Ptr Secreted/periplasmic Zn-dependent peptidases, 93.3
KOG2681 498 consensus Metal-dependent phosphohydrolase [Functi 86.63
PF09568170 RE_MjaI: MjaI restriction endonuclease; InterPro: 86.14
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=7e-35  Score=273.60  Aligned_cols=182  Identities=29%  Similarity=0.462  Sum_probs=165.2

Q ss_pred             chHHHHHHHHHchHHHHHhhhccccceEEEEEEeeeCCeeEEEEEEeCCCCChhHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 028703            2 NVKLQLLALIAKQPAFHQLRTVEQLGYITALLQRNDFGIHGVQFIIQSSVKGPKYIDLRVESFLQMFESKLYEMTSDQFK   81 (205)
Q Consensus         2 ~a~~~Ll~~ils~~~f~~LRTkqQLGYvV~s~~~~~~~~~gl~~~VQS~~~~~~~l~~~i~~Fl~~~~~~L~~ls~eeF~   81 (205)
                      .|+..|+.++++.+||++|||||||||+|+|+++.+.+.+|+.|+|||+.++|++|.+||..|++.+...|.+|++++|+
T Consensus       753 ~a~s~Ll~~l~~~~ff~~LRTkeQLGY~Vfs~~~~v~~~~gi~f~vqS~~~~p~~L~~r~~~F~~~~~~~l~~ms~e~Fe  832 (937)
T COG1025         753 SALSSLLGQLIHPWFFDQLRTKEQLGYAVFSGPREVGRTPGIGFLVQSNSKSPSYLLERINAFLETAEPELREMSEEDFE  832 (937)
T ss_pred             HHHHHHHHHHHhHHhHHHhhhhhhcceEEEecceeecCccceEEEEeCCCCChHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccCcChHHHHHHhHHHHhcCCCCccccHHHHHHHhcCCHHHHHHHHHHhhhcCCCCccEEEEEEeeCCC
Q 028703           82 NNVNALIDMKLEKHKNLKEESGFYWREISDGILKFDRREVEVAALRQLTQQELIYFFNENIKAGAPRKKTLSVRVYGSLH  161 (205)
Q Consensus        82 ~~k~~li~~l~~~~~sl~~~~~~~w~~I~~~~~~F~~~~~~i~~l~~it~~dl~~f~~~~~~~~~~~~~~l~i~v~~~~~  161 (205)
                      .+|++|++++.++++|+.+++.|+|..|..|.++|+++++.|+++++||++++++||.+.+  ...++.++++||.|++.
T Consensus       833 ~~k~alin~il~~~~nl~e~a~r~~~~~~~g~~~Fd~~ek~i~~vk~LT~~~l~~f~~~~l--~~~~g~~l~~~i~g~~~  910 (937)
T COG1025         833 QIKKALINQILQPPQNLAEEASRLWKAFGRGNLDFDHREKKIEAVKTLTKQKLLDFFENAL--SYEQGSKLLSHIRGQNG  910 (937)
T ss_pred             HHHHHHHHHHHccCCCHHHHHHHHHHHhccCCCCcCcHHHHHHHHHhcCHHHHHHHHHHhh--cccccceeeeeeecccc
Confidence            9999999999999999999999999999999999999999999999999999999999999  46788999999999655


Q ss_pred             CcccccccCCCCCCCccccCCHHhHhccCC
Q 028703          162 APELKEETSESADPHIVHIDDIFSFRRSQP  191 (205)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~i~d~~~fk~~~~  191 (205)
                      .+      +....++-..+++..+++..++
T Consensus       911 e~------~~~~~~~~~~~~~~~~~~~~~~  934 (937)
T COG1025         911 EA------EYAHPEGWTVLENVSALQQTAP  934 (937)
T ss_pred             cc------ccccCCceeeehhhhhhccccc
Confidence            22      2333344455666666665554

>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2681 consensus Metal-dependent phosphohydrolase [Function unknown] Back     alignment and domain information
>PF09568 RE_MjaI: MjaI restriction endonuclease; InterPro: IPR019068 There are four classes of restriction endonucleases: types I, II,III and IV Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query205
3e4a_A1019 Human Ide-Inhibitor Complex At 2.6 Angstrom Resolut 2e-28
2wby_A990 Crystal Structure Of Human Insulin-Degrading Enzyme 3e-28
3hgz_A969 Crystal Structure Of Human Insulin-Degrading Enzyme 3e-28
3cww_A990 Crystal Structure Of Ide-Bradykinin Complex Length 3e-28
3qz2_A990 The Structure Of Cysteine-Free Human Insulin Degrad 3e-28
2g47_A990 Crystal Structure Of Human Insulin-Degrading Enzyme 4e-27
3e4z_A990 Crystal Structure Of Human Insulin Degrading Enzyme 5e-27
3p7o_A1019 Rat Insulin Degrading Enzyme (Insulysin) E111f Muta 6e-27
3p7l_A978 Rat Insulin Degrading Enzyme (Insulysin) Length = 9 7e-27
3tuv_A1019 Crystal Structure Of Insulysin With Bound Atp Lengt 7e-27
2jg4_A990 Substrate-Free Ide Structure In Its Closed Conforma 1e-26
1q2l_A939 Crystal Structure Of Pitrilysin Length = 939 2e-12
>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution Length = 1019 Back     alignment and structure 
Iteration: 1

 Score =  121 bits (304), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/202 (38%), Positives = 108/202 (53%), Gaps = 11/202 (5%)
Query: 2    NVKLQLLALIAKQPAFHQLRTVEQLGYITALLQRNDFGIHGVQFIIQSSVKGPKYIDLRV 61
            N+ L+L A I  +PAF+ LRT EQLGYI     R   GI G++FIIQS  K P Y++ RV
Sbjct: 805  NMFLELFAQIISEPAFNTLRTKEQLGYIVFSGPRRANGIQGLRFIIQSE-KPPHYLESRV 863
Query: 62   ESFLQMFESKLYEMTSDQFKNNVNALIDMKLEKHKNLKEESGFYWREISDGILKFDRREV 121
            E+FL   E  + +MT + F+ ++ AL   +L+K K L  ES  YW EI      FDR   
Sbjct: 864  EAFLITMEKSIEDMTEEAFQKHIQALAIRRLDKPKKLSAESAKYWGEIISQQYNFDRDNT 923
Query: 122  EVAALRQLTQQELIYFFNENIKAGAPRKKTLSVR----------VYGSLHAPELKEETSE 171
            EVA L+ LT++++I F+ E +   APR+  +SV           V G   A      +  
Sbjct: 924  EVAYLKTLTKEDIIKFYKEMLAVDAPRRHKVSVHVLAREMDSNPVVGEFPAQNDINLSQA 983
Query: 172  SADPHIVHIDDIFSFRRSQPLY 193
             A P    I ++  F+R  PL+
Sbjct: 984  PALPQPEVIQNMTEFKRGLPLF 1005
>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In Complex With Insulin Length = 990 Back     alignment and structure
>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In Complex With Amylin Length = 969 Back     alignment and structure
>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex Length = 990 Back     alignment and structure
>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading Enzyme Length = 990 Back     alignment and structure
>pdb|2G47|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In Complex With Amyloid-Beta (1-40) Length = 990 Back     alignment and structure
>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In Complex With Insulin-Like Growth Factor Ii Length = 990 Back     alignment and structure
>pdb|3P7O|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) E111f Mutant With Two Bound Peptides Length = 1019 Back     alignment and structure
>pdb|3P7L|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) Length = 978 Back     alignment and structure
>pdb|3TUV|A Chain A, Crystal Structure Of Insulysin With Bound Atp Length = 1019 Back     alignment and structure
>pdb|2JG4|A Chain A, Substrate-Free Ide Structure In Its Closed Conformation Length = 990 Back     alignment and structure
>pdb|1Q2L|A Chain A, Crystal Structure Of Pitrilysin Length = 939 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query205
3cww_A990 Insulysin, insulin-degrading enzyme, insulinase; A 4e-52
1q2l_A939 Protease III; hydrolase; 2.20A {Escherichia coli s 1e-49
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Length = 990 Back     alignment and structure
 Score =  178 bits (452), Expect = 4e-52
 Identities = 75/207 (36%), Positives = 107/207 (51%), Gaps = 11/207 (5%)

Query: 1   MNVKLQLLALIAKQPAFHQLRTVEQLGYITALLQRNDFGIHGVQFIIQSSVKGPKYIDLR 60
            N+ L+L A I  +PAF+ LRT EQLGYI     R   GI G++FIIQS  K P Y++ R
Sbjct: 775 ENMFLELFAQIISEPAFNTLRTKEQLGYIVFSGPRRANGIQGLRFIIQSE-KPPHYLESR 833

Query: 61  VESFLQMFESKLYEMTSDQFKNNVNALIDMKLEKHKNLKEESGFYWREISDGILKFDRRE 120
           VE+FL   E  + +MT + F+ ++ AL   +L+K K L  ES  YW EI      FDR  
Sbjct: 834 VEAFLITMEKSIEDMTEEAFQKHIQALAIRRLDKPKKLSAESAKYWGEIISQQYNFDRDN 893

Query: 121 VEVAALRQLTQQELIYFFNENIKAGAPRKKTLSVRVYGSLHAPELKEETSESAD------ 174
            EVA L+ LT+ ++I F+ E +   APR+  +SV V               + +      
Sbjct: 894 TEVAYLKTLTKADIIKFYKEMLAVDAPRRHKVSVHVLAREMDSNPVVGEFPAQNDINLSQ 953

Query: 175 ----PHIVHIDDIFSFRRSQPLYGSFK 197
               P    I ++ +F+R  PL+   K
Sbjct: 954 APALPQPEVIQNMTAFKRGLPLFPLVK 980
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 939 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query205
1q2l_A939 Protease III; hydrolase; 2.20A {Escherichia coli s 99.96
3cww_A990 Insulysin, insulin-degrading enzyme, insulinase; A 99.96
3gwb_A434 Peptidase M16 inactive domain family protein; pept 99.66
1pp9_B439 Ubiquinol-cytochrome C reductase complex core Pro 99.61
1hr6_A475 Alpha-MPP, mitochondrial processing peptidase alph 99.58
3amj_B424 Zinc peptidase inactive subunit; alpha/beta, zinc 99.56
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 99.53
3cx5_A431 Cytochrome B-C1 complex subunit 1, mitochondrial; 99.52
3ih6_A197 Putative zinc protease; bordetella pertussis toham 99.44
2fge_A995 Atprep2;, zinc metalloprotease (insulinase family) 99.34
3hdi_A421 Processing protease; CAGE structure, M16B peptidas 99.31
3eoq_A406 Putative zinc protease; two similar domains of bet 99.29
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 99.22
1pp9_A446 Ubiquinol-cytochrome C reductase complex core Pro 99.21
3ami_A445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 99.07
3go9_A492 Insulinase family protease; IDP00573, structural g 98.78
3s5m_A1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 98.3
2fge_A 995 Atprep2;, zinc metalloprotease (insulinase family) 98.01
3s5m_A 1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 97.79
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 97.68
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 97.25
3cx5_B352 Cytochrome B-C1 complex subunit 2, mitochondrial; 97.04
3amj_B 424 Zinc peptidase inactive subunit; alpha/beta, zinc 96.61
3cx5_A 431 Cytochrome B-C1 complex subunit 1, mitochondrial; 95.8
3d3y_A 425 Uncharacterized protein; APC29635, conserved prote 95.4
3gwb_A 434 Peptidase M16 inactive domain family protein; pept 95.23
3hdi_A 421 Processing protease; CAGE structure, M16B peptidas 94.94
3ami_A 445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 94.59
3eoq_A 406 Putative zinc protease; two similar domains of bet 94.56
1pp9_B 439 Ubiquinol-cytochrome C reductase complex core Pro 94.09
1hr6_B 443 Beta-MPP, mitochondrial processing peptidase beta 94.07
1pp9_A 446 Ubiquinol-cytochrome C reductase complex core Pro 93.96
1hr6_A 475 Alpha-MPP, mitochondrial processing peptidase alph 93.39
3cx5_B 352 Cytochrome B-C1 complex subunit 2, mitochondrial; 93.21
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
Probab=99.96  E-value=2.4e-28  Score=234.06  Aligned_cols=189  Identities=26%  Similarity=0.368  Sum_probs=172.0

Q ss_pred             chHHHHHHHHHchHHHHHhhhccccceEEEEEEeeeCCeeEEEEEEeCCCCChhHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 028703            2 NVKLQLLALIAKQPAFHQLRTVEQLGYITALLQRNDFGIHGVQFIIQSSVKGPKYIDLRVESFLQMFESKLYEMTSDQFK   81 (205)
Q Consensus         2 ~a~~~Ll~~ils~~~f~~LRTkqQLGYvV~s~~~~~~~~~gl~~~VQS~~~~~~~l~~~i~~Fl~~~~~~L~~ls~eeF~   81 (205)
                      .+++.+|++++++++|++|||++||||.|+|+.....+..|+.|+|||+.++|+++..+|+.|+..+...+.+||+++|+
T Consensus       750 ~~~~~lL~~~~~s~lf~~LRek~gl~Y~v~s~~~~~~~~~g~~~~i~s~~~~p~~~~~~i~~~~~~~~~~~~~~t~~el~  829 (939)
T 1q2l_A          750 SAYSSLLGQIVQPWFYNQLRTEEQLGYAVFAFPMSVGRQWGMGFLLQSNDKQPSFLWERYKAFFPTAEAKLRAMKPDEFA  829 (939)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHTSCCSSSCEEEEEEEETTEEEEEEEEEESSSCHHHHHHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCceeeeeEeecCCeeEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            46789999999999999999999999999999999999999999999988999999999999999999888899999999


Q ss_pred             HHHHHHHHHHhccCcChHHHHHHhHHHHhcCCCCccccHHHHHHHhcCCHHHHHHHHHHhhhcCCCCccEEEEEEeeCCC
Q 028703           82 NNVNALIDMKLEKHKNLKEESGFYWREISDGILKFDRREVEVAALRQLTQQELIYFFNENIKAGAPRKKTLSVRVYGSLH  161 (205)
Q Consensus        82 ~~k~~li~~l~~~~~sl~~~~~~~w~~I~~~~~~F~~~~~~i~~l~~it~~dl~~f~~~~~~~~~~~~~~l~i~v~~~~~  161 (205)
                      .+|+++++++.+.+.|+.+++.++|.+|..+.+.|++.+..++.|++||++|+.+++++++  .++++++++|+|.|..+
T Consensus       830 ~~k~~l~~~~~~~~~s~~~~~~~~w~~i~~~~~~~d~~~~~~~~i~~vT~~dv~~~a~~~l--~~~~~~~l~v~v~G~~~  907 (939)
T 1q2l_A          830 QIQQAVITQMLQAPQTLGEEASKLSKDFDRGNMRFDSRDKIVAQIKLLTPQKLADFFHQAV--VEPQGMAILSQISGSQN  907 (939)
T ss_dssp             HHHHHHHHHHTCCCSSHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTCCHHHHHHHHHHHT--TSCSSEEEEEEECCSSH
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCCCChHHHHHHHHhcCCHHHHHHHHHHHh--cCCCCCEEEEEEecCCC
Confidence            9999999999999999999999999999999999999999999999999999999999998  46788899999999875


Q ss_pred             CcccccccCCCCCCCccccCCHHhHhccCCCcCCCC
Q 028703          162 APELKEETSESADPHIVHIDDIFSFRRSQPLYGSFK  197 (205)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~i~d~~~fk~~~~~~~~~~  197 (205)
                      ...     .....+....|+|+..||+.+++||..+
T Consensus       908 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  938 (939)
T 1q2l_A          908 GKA-----EYVHPEGWKVWENVSALQQTMPLMSEKN  938 (939)
T ss_dssp             HHH-----CCCCCTTCEECSCHHHHHTTSCEEECC-
T ss_pred             Ccc-----cccccCCCcEeCCHHHHhhcCccccccc
Confidence            321     1124456678999999999999999653
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Back     alignment and structure
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Back     alignment and structure
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 205
d1q2la2228 d.185.1.1 (A:733-960) Protease III {Escherichia co 1e-37
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]} Length = 228 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Protease III
species: Escherichia coli [TaxId: 562]

 Score =  128 bits (322), Expect = 1e-37
 Identities = 49/193 (25%), Positives = 92/193 (47%), Gaps = 7/193 (3%)

Query: 1   MNVKLQLLALIAKQPAFHQLRTVEQLGYITALLQRNDFGIHGVQFIIQSSVKGPKYIDLR 60
            +    LL  I +   ++QLRT EQLGY       +     G+ F++QS+ K P ++  R
Sbjct: 40  SSAYSSLLGQIVQPWFYNQLRTEEQLGYAVFAFPMSVGRQWGMGFLLQSNDKQPSFLWER 99

Query: 61  VESFLQMFESKLYEMTSDQFKNNVNALIDMKLEKHKNLKEESGFYWREISDGILKFDRRE 120
            ++F    E+KL  M  D+F     A+I   L+  + L EE+    ++   G ++FD R+
Sbjct: 100 YKAFFPTAEAKLRAMKPDEFAQIQQAVITQMLQAPQTLGEEASKLSKDFDRGNMRFDSRD 159

Query: 121 VEVAALRQLTQQELIYFFNENIKAGAPRKKTLSVRVYGSLHAPELKEETSESADPHIVHI 180
             VA ++ LT Q+L  FF++ +    P+   +  ++ GS +      +            
Sbjct: 160 KIVAQIKLLTPQKLADFFHQAVV--EPQGMAILSQISGSQN-----GKAEYVHPEGWKVW 212

Query: 181 DDIFSFRRSQPLY 193
           +++ + +++ PL 
Sbjct: 213 ENVSALQQTMPLM 225

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query205
d1q2la2228 Protease III {Escherichia coli [TaxId: 562]} 100.0
d1ppjb2204 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 99.51
d1hr6b2217 Mitochondrial processing peptidase (MPP) beta chai 99.45
d1hr6a2237 Mitochondrial processing peptidase (MPP) alpha cha 99.4
d1ppja2209 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 99.35
d2fgea2196 Presequence protease 1, PREP1 {Thale cress (Arabid 99.24
d3cx5a2218 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 99.06
d1q2la1229 Protease III {Escherichia coli [TaxId: 562]} 98.28
d1ppja1232 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 97.08
d1hr6b1222 Mitochondrial processing peptidase (MPP) beta chai 96.82
d1hr6a1220 Mitochondrial processing peptidase (MPP) alpha cha 96.64
d3cx5a1213 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 96.58
d1ppjb1219 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 95.97
d3cx5b1202 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 92.0
d1q2la4240 Protease III {Escherichia coli [TaxId: 562]} 91.32
d2fgea3268 Presequence protease 1, PREP1 {Thale cress (Arabid 88.56
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Protease III
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.5e-44  Score=296.00  Aligned_cols=187  Identities=26%  Similarity=0.378  Sum_probs=175.8

Q ss_pred             chHHHHHHHHHchHHHHHhhhccccceEEEEEEeeeCCeeEEEEEEeCCCCChhHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 028703            2 NVKLQLLALIAKQPAFHQLRTVEQLGYITALLQRNDFGIHGVQFIIQSSVKGPKYIDLRVESFLQMFESKLYEMTSDQFK   81 (205)
Q Consensus         2 ~a~~~Ll~~ils~~~f~~LRTkqQLGYvV~s~~~~~~~~~gl~~~VQS~~~~~~~l~~~i~~Fl~~~~~~L~~ls~eeF~   81 (205)
                      +|++.||+++|+++||++||||+||||+|+|+.+...+++|+.|+|||+.++|.++.++|++|+..+...+.+|++++|+
T Consensus        41 ~a~~~ll~~~ls~~~F~eLRtk~qLGY~V~s~~~~~~~~~g~~~~vqS~~~~~~~l~~~I~~fl~~~~~~l~~~~~eef~  120 (228)
T d1q2la2          41 SAYSSLLGQIVQPWFYNQLRTEEQLGYAVFAFPMSVGRQWGMGFLLQSNDKQPSFLWERYKAFFPTAEAKLRAMKPDEFA  120 (228)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHTSCCSSSCEEEEEEEETTEEEEEEEEEESSSCHHHHHHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHhccceEEEEEEEEeCCcccEEEEEEeCCCCHHHHHHHHHHHHHHHHHHhhcccHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccCcChHHHHHHhHHHHhcCCCCccccHHHHHHHhcCCHHHHHHHHHHhhhcCCCCccEEEEEEeeCCC
Q 028703           82 NNVNALIDMKLEKHKNLKEESGFYWREISDGILKFDRREVEVAALRQLTQQELIYFFNENIKAGAPRKKTLSVRVYGSLH  161 (205)
Q Consensus        82 ~~k~~li~~l~~~~~sl~~~~~~~w~~I~~~~~~F~~~~~~i~~l~~it~~dl~~f~~~~~~~~~~~~~~l~i~v~~~~~  161 (205)
                      .+|+++++++.++|.|+.+++.++|.+|..+.|+||++++.+++|++||++|+++||++++  .++++++|+|+|.|..+
T Consensus       121 ~~K~~li~~l~~~~~~l~~~~~~~w~~I~~~~~~Fd~~e~~~~~l~~lT~edl~~f~~~~i--~~~~~~~l~i~v~g~~~  198 (228)
T d1q2la2         121 QIQQAVITQMLQAPQTLGEEASKLSKDFDRGNMRFDSRDKIVAQIKLLTPQKLADFFHQAV--VEPQGMAILSQISGSQN  198 (228)
T ss_dssp             HHHHHHHHHHTCCCSSHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTCCHHHHHHHHHHHT--TSCSSEEEEEEECCSSH
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCCCcChHHHHHHHHHhcCHHHHHHHHHHHh--cCCcccEEEEEEecccC
Confidence            9999999999999999999999999999999999999999999999999999999999998  46778899999999876


Q ss_pred             CcccccccCCCCCCCccccCCHHhHhccCCCcCC
Q 028703          162 APELKEETSESADPHIVHIDDIFSFRRSQPLYGS  195 (205)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~i~d~~~fk~~~~~~~~  195 (205)
                      ..     ......++...|+|++.||+.+|+||.
T Consensus       199 ~~-----~~~~~~~~~~~i~~i~~f~~~~~l~~~  227 (228)
T d1q2la2         199 GK-----AEYVHPEGWKVWENVSALQQTMPLMSE  227 (228)
T ss_dssp             HH-----HCCCCCTTCEECSCHHHHHTTSCEEEC
T ss_pred             cc-----ccccCCCCCeEeCCHHHHHhcCCCcCC
Confidence            43     224445677889999999999999985
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure