Citrus Sinensis ID: 028704

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-----
Protein Sequence
MAEEQVKKVEAETPAAPAPAPALAPAPAPAVPNNDVAEEKAVTQLHDQEKPVDDSKALAVVDQTPDSAKKKISGEKKISGSHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHcccccccccccccccccccccccccccHHcccccccccccccccccccccccEEEEEccccccccccccHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccEEccc
Coil and Loop (DISEMBL)
MAEEQVKKVeaetpaapapapalapapapavpnndvaEEKAVTQlhdqekpvddskalavvdqtpdsakkkisgekkisgshdRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRatgttpkkllgcf
Flexible Loop (DISEMBL)
MAEEQVKKVeaetpaapapapALAPAPAPAVPNNDVAEEKAVTQlhdqekpvddskalavvdqtpdsakkkisgekkisgshdrdvALAEVEKEKRESFIKAWeesektkaenkAQKKLSavaawenskkasLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAmvearrgedvlkAEEIAakyratgttpkkllgcf
Low Complexity Region (SEG)
MAEEQVKKVEAETpaapapapalapapapavpNNDVAEEKAVTQLHDQEKPVDDSKALAVVDQTPDsakkkisgekkisgsHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENskkasleaklkkieEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF
Disordered region (IsUnstruct)
*************************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
*****************************************************************************************************AWE**EK********K*LSAVAAWE*****************************************************************RATGTTPKKLLGCF
Disordered Region (DISEMBL)
***************************APAVPNNDVAEEKAVTQLHDQEKPVDDSKALAVVDQ**********************VALAEVEKEKRESFIKAWEE***************************LEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF
Disordered Region (DISPRO)
*******************************************************KAL*V*DQT*****************HDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAEEQVKKVEAETPAAPAPAPALAPAPAPAVPNNDVAEEKAVTQLHDQEKPVDDSKALAVVDQTPDSAKKKISGEKKISGSHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	205	2.2.26 [Sep-21-2011]
P93788	198	Remorin OS=Solanum tubero	N/A	no	0.931	0.964	0.632	1e-58
Q9M2D8	212	Uncharacterized protein A	yes	no	0.804	0.778	0.660	2e-51
O80837	190	Remorin OS=Arabidopsis th	no	no	0.921	0.994	0.606	2e-48

>sp|P93788|REMO_SOLTU Remorin OS=Solanum tuberosum PE=1 SV=1

 Score =  225 bits (574), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 134/212 (63%), Positives = 158/212 (74%), Gaps = 21/212 (9%)

Query: 1   MAEEQVKKVEAETPAAPAPAPALAPAPAPAVPNNDVAEEKAVTQ------LHDQEKPVDD 54
           MAE + KKVE   PA PAP P  AP          VA+EKA+          ++EKP DD
Sbjct: 1   MAELEAKKVEIVDPAPPAPGPVEAP-------KEVVADEKAIVAPALPPPAEEKEKP-DD 52

Query: 55  SKALAVVD-QTPDSAKKKISGEKKISGSHDRDVALAEVEKEKRESFIKAWEESEKTKAEN 113
           SKAL VV+ + P+ A      ++K  GS DRD  LA V  EKR S IKAWEESEK+KAEN
Sbjct: 53  SKALVVVETKAPEPA------DEKKEGSIDRDAVLARVATEKRVSLIKAWEESEKSKAEN 106

Query: 114 KAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMV 173
           KAQKK+SA+ AWENSKKA+LEA+LKK+EEQLE+KKAEY EKMKNK+AL+HKEAEEKRAM+
Sbjct: 107 KAQKKVSAIGAWENSKKANLEAELKKMEEQLEKKKAEYTEKMKNKIALLHKEAEEKRAMI 166

Query: 174 EARRGEDVLKAEEIAAKYRATGTTPKKLLGCF 205
           EA+RGED+LKAEE+AAKYRATGT PKK+LG F
Sbjct: 167 EAKRGEDLLKAEELAAKYRATGTAPKKILGIF 198

Binds to both simple and complex galacturonides. May be involved in cell-to-cell signaling and molecular transport.
Solanum tuberosum (taxid: 4113)

>sp|Q9M2D8|Y3126_ARATH Uncharacterized protein At3g61260 OS=Arabidopsis thaliana GN=At3g61260 PE=1 SV=1

 Score =  201 bits (512), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 113/171 (66%), Positives = 135/171 (78%), Gaps = 6/171 (3%)

Query: 35  DVAEEKAVTQLHDQEKPVDDSKALAVVDQTPDSAKKKISGEKKISGSHDRDVALAEVEKE 94
           DVAEEK   Q    E+  DDSKAL VV++  +      +  K  S S DRDV LA++ KE
Sbjct: 48  DVAEEK--IQNPPPEQIFDDSKALTVVEKPVEEP----APAKPASASLDRDVKLADLSKE 101

Query: 95  KRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEK 154
           KR SF++AWEESEK+KAENKA+KK++ V AWENSKKA++EA+LKKIEEQLE+KKAEYAE+
Sbjct: 102 KRLSFVRAWEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAER 161

Query: 155 MKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF 205
           MKNKVA +HKEAEE+RAM+EA+RGEDVLKAEE AAKYRATG  PK   GCF
Sbjct: 162 MKNKVAAIHKEAEERRAMIEAKRGEDVLKAEETAAKYRATGIVPKATCGCF 212

Arabidopsis thaliana (taxid: 3702)

>sp|O80837|REMO_ARATH Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1

 Score =  191 bits (486), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 125/206 (60%), Positives = 154/206 (74%), Gaps = 17/206 (8%)

Query: 1   MAEEQ-VKKVEAETPAAPAPAPALAPAPAPAVPNNDVAEEKAVTQLHDQEKPVDDSKALA 59
           MAEEQ   KV+ E+PA  APA    PAP       +VA+EK    +H+   P  +SKALA
Sbjct: 1   MAEEQKTSKVDVESPAVLAPAKEPTPAPV------EVADEK----IHNP--PPVESKALA 48

Query: 60  VVDQTPDSAKKKISGEKKISGSHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKL 119
           VV++  +    K    K  SGS DRDV LA++EKEK+ SFIKAWEESEK+KAEN+AQKK+
Sbjct: 49  VVEKPIEEHTPK----KASSGSADRDVILADLEKEKKTSFIKAWEESEKSKAENRAQKKI 104

Query: 120 SAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGE 179
           S V AWENSKKA++EA+L+KIEE+LE+KKA+Y EKMKNKVA +HK AEEKRAMVEA++GE
Sbjct: 105 SDVHAWENSKKAAVEAQLRKIEEKLEKKKAQYGEKMKNKVAAIHKLAEEKRAMVEAKKGE 164

Query: 180 DVLKAEEIAAKYRATGTTPKKLLGCF 205
           ++LKAEE+ AKYRATG  PK   GCF
Sbjct: 165 ELLKAEEMGAKYRATGVVPKATCGCF 190


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.303    0.119    0.312 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,981,424
Number of Sequences: 539616
Number of extensions: 3049081
Number of successful extensions: 35707
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 2377
Number of HSP's that attempted gapping in prelim test: 26919
Number of HSP's gapped (non-prelim): 7935
length of query: 205
length of database: 191,569,459
effective HSP length: 112
effective length of query: 93
effective length of database: 131,132,467
effective search space: 12195319431
effective search space used: 12195319431
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 58 (26.9 bits)

Exhibits a non sequence-specific DNA-binding activity.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
255541538	188	Remorin, putative [Ricinus communis] gi|	0.917	1.0	0.731	5e-69
224130228	193	predicted protein [Populus trichocarpa]	0.921	0.979	0.665	3e-63
224067874	196	predicted protein [Populus trichocarpa]	0.921	0.964	0.655	7e-60
242076586	212	hypothetical protein SORBIDRAFT_06g02363	1.0	0.966	0.638	3e-57
34925093	198	RecName: Full=Remorin; AltName: Full=pp3	0.931	0.964	0.632	8e-57
115459618	206	Os04g0533300 [Oryza sativa Japonica Grou	0.809	0.805	0.702	1e-56
351721994	183	uncharacterized protein LOC100305679 [Gl	0.873	0.978	0.626	1e-56
326492750	211	predicted protein [Hordeum vulgare subsp	0.834	0.810	0.679	6e-56
341833968	198	remorin [Pyrus x bretschneideri]	0.907	0.939	0.604	9e-56
432278309	199	remorin [Morus indica]	0.965	0.994	0.621	1e-55

>gi|255541538|ref|XP_002511833.1| Remorin, putative [Ricinus communis] gi|223549013|gb|EEF50502.1| Remorin, putative [Ricinus communis]

 Score =  266 bits (679), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 150/205 (73%), Positives = 171/205 (83%), Gaps = 17/205 (8%)

Query: 1   MAEEQVKKVEAETPAAPAPAPALAPAPAPAVPNNDVAEEKAVTQLHDQEKPVDDSKALAV 60
           MAE++ KK+EAE+P APAPA A           +DVA +KA T    +EKP DDSKALAV
Sbjct: 1   MAEQEAKKLEAESPVAPAPAEA----------KSDVAHDKA-TVPTPEEKP-DDSKALAV 48

Query: 61  VDQTPDSAKKKISGEKKISGSHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLS 120
           V++ P+S  KK SG     GS DRD+ALAEVEKEKR SFIKAWE+SEK+KAENKAQKKLS
Sbjct: 49  VEKVPESGPKKTSG-----GSLDRDIALAEVEKEKRNSFIKAWEDSEKSKAENKAQKKLS 103

Query: 121 AVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGED 180
           +V AWENSKKA+LEAKL+KIEEQLE+KKAEYAEKMKNKVALVHK+AEEKRAMVEA+RGE+
Sbjct: 104 SVTAWENSKKAALEAKLRKIEEQLEKKKAEYAEKMKNKVALVHKQAEEKRAMVEAQRGEE 163

Query: 181 VLKAEEIAAKYRATGTTPKKLLGCF 205
           VLKAEE+AAKYRATG TPKKLLGCF
Sbjct: 164 VLKAEEMAAKYRATGQTPKKLLGCF 188

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130228|ref|XP_002320784.1| predicted protein [Populus trichocarpa] gi|222861557|gb|EEE99099.1| predicted protein [Populus trichocarpa]

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 139/209 (66%), Positives = 167/209 (79%), Gaps = 20/209 (9%)

Query: 1   MAEEQVKKVEAETPAAPAPAPALAPAPAPAVPNNDVAEEKAVT----QLHDQEKPVDDSK 56
           MAE++VKKVE ETP  PAP              +DVA+EKA+        ++EK  D+ K
Sbjct: 1   MAEQEVKKVETETPVTPAPVET----------KSDVADEKAIVPPPPAAEEKEKVADELK 50

Query: 57  ALAVVDQTPDSAKKKISGEKKISGSHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQ 116
           ALAVV++T + A KKISG     GS DRD+ALA++EKEKR SFIKAWE+SEKTKAENK+Q
Sbjct: 51  ALAVVEKT-EPAPKKISG-----GSIDRDIALADLEKEKRLSFIKAWEDSEKTKAENKSQ 104

Query: 117 KKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEAR 176
           KKLSAV AWENSKKA+LEA L+K+EE+LE++KAEYAEKMKNKVAL+HK+AEE+RAMVEA+
Sbjct: 105 KKLSAVVAWENSKKAALEATLRKMEEKLEKQKAEYAEKMKNKVALIHKDAEEQRAMVEAK 164

Query: 177 RGEDVLKAEEIAAKYRATGTTPKKLLGCF 205
           RGE+ LKAEE+AAKYRATG TPKKLLGCF
Sbjct: 165 RGEEFLKAEEMAAKYRATGQTPKKLLGCF 193

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067874|ref|XP_002302576.1| predicted protein [Populus trichocarpa] gi|118481279|gb|ABK92585.1| unknown [Populus trichocarpa] gi|222844302|gb|EEE81849.1| predicted protein [Populus trichocarpa]

 Score =  235 bits (600), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 139/212 (65%), Positives = 165/212 (77%), Gaps = 23/212 (10%)

Query: 1   MAEEQVKKVEAETPAAPAP-------APALAPAPAPAVPNNDVAEEKAVTQLHDQEKPVD 53
           MAE++VKKVEA TP APAP       A     AP P V      ++KA T         +
Sbjct: 1   MAEQEVKKVEAVTPVAPAPVETKSDVADGKVTAPPPPVAAE---KQKAATA-------AE 50

Query: 54  DSKALAVVDQTPDSAKKKISGEKKISGSHDRDVALAEVEKEKRESFIKAWEESEKTKAEN 113
           +SKALAVV++T + A KK+SG     GS DRDVALA++EKEKR SFIKAWE+SEKTKAEN
Sbjct: 51  ESKALAVVEKT-EPAPKKVSG-----GSIDRDVALADLEKEKRLSFIKAWEDSEKTKAEN 104

Query: 114 KAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMV 173
           K+QK  SAVAAWENSKKA+LEAKL+K+EE+LE++KAEYAEKMKNK+AL+HKEAEEK+A+V
Sbjct: 105 KSQKNFSAVAAWENSKKAALEAKLRKMEEKLEKQKAEYAEKMKNKIALIHKEAEEKKAIV 164

Query: 174 EARRGEDVLKAEEIAAKYRATGTTPKKLLGCF 205
           EA+RGE+VLKA E AAKYRATG TPKKLLGCF
Sbjct: 165 EAKRGEEVLKAGETAAKYRATGQTPKKLLGCF 196

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242076586|ref|XP_002448229.1| hypothetical protein SORBIDRAFT_06g023630 [Sorghum bicolor] gi|241939412|gb|EES12557.1| hypothetical protein SORBIDRAFT_06g023630 [Sorghum bicolor]

 Score =  226 bits (577), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 134/210 (63%), Positives = 159/210 (75%), Gaps = 5/210 (2%)

Query: 1   MAEEQVKKVEAETPAAPAPAPALAPAPAPAVPNNDVAEEKAVTQLHD-----QEKPVDDS 55
           MAEE  KKVE E      P  A A A   A    DVAEEKAV    +     ++ P DDS
Sbjct: 1   MAEEAAKKVEVEVTKDKEPEAAPAEAVPEAAAKEDVAEEKAVIPATEPPAAEEKPPADDS 60

Query: 56  KALAVVDQTPDSAKKKISGEKKISGSHDRDVALAEVEKEKRESFIKAWEESEKTKAENKA 115
           KALA+V++  D    +    +K  GS+DRD+ALA VE EKR S IKAWEE+EKTKAENKA
Sbjct: 61  KALAIVEKVADEPAPEKPAAEKQGGSNDRDLALARVETEKRNSLIKAWEENEKTKAENKA 120

Query: 116 QKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEA 175
            KK+SA+ +WEN+KKA++EA+LKKIEEQLE+KKAEYAEKMKNKVA++HKEAEEKRAMVEA
Sbjct: 121 AKKVSAILSWENTKKANIEAQLKKIEEQLEKKKAEYAEKMKNKVAMIHKEAEEKRAMVEA 180

Query: 176 RRGEDVLKAEEIAAKYRATGTTPKKLLGCF 205
           +RGE+VLKAEE+AAKYRATG  PKKL+GCF
Sbjct: 181 KRGEEVLKAEEMAAKYRATGHAPKKLIGCF 210

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|34925093|sp|P93788.1|REMO_SOLTU RecName: Full=Remorin; AltName: Full=pp34 gi|1881585|gb|AAB49425.1| remorin [Solanum tuberosum]

 Score =  225 bits (574), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 134/212 (63%), Positives = 158/212 (74%), Gaps = 21/212 (9%)

Query: 1   MAEEQVKKVEAETPAAPAPAPALAPAPAPAVPNNDVAEEKAVTQ------LHDQEKPVDD 54
           MAE + KKVE   PA PAP P  AP          VA+EKA+          ++EKP DD
Sbjct: 1   MAELEAKKVEIVDPAPPAPGPVEAP-------KEVVADEKAIVAPALPPPAEEKEKP-DD 52

Query: 55  SKALAVVD-QTPDSAKKKISGEKKISGSHDRDVALAEVEKEKRESFIKAWEESEKTKAEN 113
           SKAL VV+ + P+ A      ++K  GS DRD  LA V  EKR S IKAWEESEK+KAEN
Sbjct: 53  SKALVVVETKAPEPA------DEKKEGSIDRDAVLARVATEKRVSLIKAWEESEKSKAEN 106

Query: 114 KAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMV 173
           KAQKK+SA+ AWENSKKA+LEA+LKK+EEQLE+KKAEY EKMKNK+AL+HKEAEEKRAM+
Sbjct: 107 KAQKKVSAIGAWENSKKANLEAELKKMEEQLEKKKAEYTEKMKNKIALLHKEAEEKRAMI 166

Query: 174 EARRGEDVLKAEEIAAKYRATGTTPKKLLGCF 205
           EA+RGED+LKAEE+AAKYRATGT PKK+LG F
Sbjct: 167 EAKRGEDLLKAEELAAKYRATGTAPKKILGIF 198

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115459618|ref|NP_001053409.1| Os04g0533300 [Oryza sativa Japonica Group] gi|32489830|emb|CAE04574.1| OSJNBb0039L24.13 [Oryza sativa Japonica Group] gi|113564980|dbj|BAF15323.1| Os04g0533300 [Oryza sativa Japonica Group] gi|125549138|gb|EAY94960.1| hypothetical protein OsI_16768 [Oryza sativa Indica Group] gi|125591096|gb|EAZ31446.1| hypothetical protein OsJ_15583 [Oryza sativa Japonica Group] gi|215678908|dbj|BAG96338.1| unnamed protein product [Oryza sativa Japonica Group] gi|215694390|dbj|BAG89383.1| unnamed protein product [Oryza sativa Japonica Group] gi|215741127|dbj|BAG97622.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 125/178 (70%), Positives = 143/178 (80%), Gaps = 12/178 (6%)

Query: 35  DVAEEKAVTQLHDQEKP-----VDDSKALAVVDQTPDS--AKKKISGEKKISGSHDRDVA 87
           DVAEEKAV              VDDSKALA+V++  D   A+K   G     GS+DRDVA
Sbjct: 32  DVAEEKAVIPAPAPPAEEEKPPVDDSKALAIVEKVADEPPAEKPAQG-----GSNDRDVA 86

Query: 88  LAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERK 147
           LA VE EKR S IKAWEE+EKTKAENKA KKLSA+ +WEN+KKA++EA+LKKIEEQLE+K
Sbjct: 87  LARVETEKRNSLIKAWEENEKTKAENKASKKLSAILSWENTKKANIEAQLKKIEEQLEKK 146

Query: 148 KAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF 205
           KAEYAEKMKNKVA+VHKEAEEKRAMVEA+RGE+VLKAEE+AAKYRATG  PKKL+GCF
Sbjct: 147 KAEYAEKMKNKVAIVHKEAEEKRAMVEAKRGEEVLKAEEMAAKYRATGHAPKKLIGCF 204

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721994|ref|NP_001235181.1| uncharacterized protein LOC100305679 [Glycine max] gi|255626287|gb|ACU13488.1| unknown [Glycine max]

 Score =  224 bits (571), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 124/198 (62%), Positives = 155/198 (78%), Gaps = 19/198 (9%)

Query: 9   VEAETPAAPAPAPALAPAPAPAVPNNDVAEEKAVTQLHDQEKPVDDSKAL-AVVDQTPDS 67
           +++++  APAPAP +A      VP+ND   +KA            +SKA+ +V ++TP  
Sbjct: 4   LQSKSETAPAPAPVVAE-----VPSNDAVAKKA--------SETGESKAIVSVSEKTPVP 50

Query: 68  AKKKISGEKKISGSHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWEN 127
           A K+ S      GS DRD+ALAEVEKEK+ S++KAWEESEK KAEN+AQK LSA+AAWEN
Sbjct: 51  ANKQSS-----RGSIDRDIALAEVEKEKKLSYVKAWEESEKAKAENRAQKHLSAIAAWEN 105

Query: 128 SKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEI 187
           SKKA+LEA+LKK+EEQLE+KKAEY EKMKNKVALVHKEAEEKRAM+EA+RGE++L+ EE+
Sbjct: 106 SKKAALEAELKKLEEQLEKKKAEYGEKMKNKVALVHKEAEEKRAMIEAKRGEEILQTEEM 165

Query: 188 AAKYRATGTTPKKLLGCF 205
           AAKYRATGTTPKK +GCF
Sbjct: 166 AAKYRATGTTPKKTIGCF 183

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326492750|dbj|BAJ90231.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326526095|dbj|BAJ93224.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  222 bits (566), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 121/178 (67%), Positives = 148/178 (83%), Gaps = 7/178 (3%)

Query: 35  DVAEEKAVTQLH----DQEKP-VDDSKALAVVDQTPDS-AKKKISGEKKI-SGSHDRDVA 87
           DV EEKAV        D+EKP VDDSKAL VV++  D    +K++ EK    GS+DRD+A
Sbjct: 32  DVTEEKAVIPAPAPAADEEKPPVDDSKALVVVEKVADEPVAEKLTDEKAAHGGSNDRDLA 91

Query: 88  LAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERK 147
           LA VE EKR S IKAWEE+EKTKAENKA KK+SA+ +WEN+KKA++EA+LKKIEEQLE+K
Sbjct: 92  LARVESEKRNSLIKAWEENEKTKAENKATKKVSAILSWENTKKANIEAQLKKIEEQLEKK 151

Query: 148 KAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF 205
           KAEYAEKMKNK A++HKEAEEKRAMVEA++GE++LKAEE+AAKYRATG +PKK++GCF
Sbjct: 152 KAEYAEKMKNKAAMIHKEAEEKRAMVEAKKGEELLKAEEMAAKYRATGNSPKKVMGCF 209

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|341833968|gb|AEK94319.1| remorin [Pyrus x bretschneideri]

 Score =  222 bits (565), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 127/210 (60%), Positives = 157/210 (74%), Gaps = 24/210 (11%)

Query: 3   EEQVKKVEAETPAAPA-PAPALAPAP------APAVPNNDVAEEKAVTQLHDQEKPVDDS 55
           EEQ+KK EAE P+ P  P PA AP        A  VP +DV             K  DD+
Sbjct: 6   EEQLKKAEAE-PSLPVEPPPASAPVDVAVEKKADVVPPSDV-----------DVKGGDDT 53

Query: 56  KALAVVDQTPDSAKKKISGEKKISGSHDRDVALAEVEKEKRESFIKAWEESEKTKAENKA 115
           KAL VVD+ P++ +KK SG     GS DRD+ALA++EKEK  SF++AWEESEK KAENKA
Sbjct: 54  KALTVVDKVPETVEKKASG-----GSIDRDIALAQLEKEKSMSFVRAWEESEKAKAENKA 108

Query: 116 QKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEA 175
           QKKLS V AWE+S+KA++EAKL+ IEEQLE+KKA+YAEKM+NKVAL+HK+A+EKRAMV A
Sbjct: 109 QKKLSDVTAWESSRKAAVEAKLRSIEEQLEKKKAQYAEKMQNKVALLHKQADEKRAMVLA 168

Query: 176 RRGEDVLKAEEIAAKYRATGTTPKKLLGCF 205
           ++GE++LKA+E AAKYRATG+ PKK LGCF
Sbjct: 169 QKGEELLKADETAAKYRATGSIPKKFLGCF 198

Source: Pyrus x bretschneideri

Species: Pyrus x bretschneideri

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|432278309|gb|AGB07445.1| remorin [Morus indica]

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 128/206 (62%), Positives = 153/206 (74%), Gaps = 8/206 (3%)

Query: 1   MAEEQVKKVEAETPAAPAPAPA-LAPAPAPAVPNNDVAEEKAVTQLHDQEKPVDDSKALA 59
           MAEEQ  KVE E P++  P  A + PA  P     DV EEK+V      E   D+SKALA
Sbjct: 1   MAEEQPIKVEPEAPSSEPPTEAKVKPAEEPP---KDVTEEKSVIPHPPPEDKPDESKALA 57

Query: 60  VVDQTPDSAKKKISGEKKISGSHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKL 119
           VVD  P+ A +K S E    GS +RD  LA V  EKR S I+AWEESEK+KAENKA K +
Sbjct: 58  VVDMEPEPAAEKSSSE----GSINRDAVLARVATEKRLSLIRAWEESEKSKAENKAHKNV 113

Query: 120 SAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGE 179
           S++ AWENSKKAS+EA+LKK EE LE+KKAEY EKMKNK+AL+HKEAEE++A++EA+RGE
Sbjct: 114 SSIGAWENSKKASVEAQLKKFEENLEKKKAEYVEKMKNKIALIHKEAEERKAIIEAKRGE 173

Query: 180 DVLKAEEIAAKYRATGTTPKKLLGCF 205
           ++LKAEE AAKYRATGT PKKLLGCF
Sbjct: 174 ELLKAEESAAKYRATGTGPKKLLGCF 199

Source: Morus indica

Species: Morus indica

Genus: Morus

Family: Moraceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
UNIPROTKB|P93788	198	P93788 "Remorin" [Solanum tube	0.795	0.823	0.587	3.4e-45
TAIR|locus:2098921	212	AT3G61260 [Arabidopsis thalian	0.804	0.778	0.578	6.4e-44
TAIR|locus:2050704	190	AT2G45820 "AT2G45820" [Arabido	0.785	0.847	0.555	2.8e-41
TAIR|locus:2172793	202	AT5G23750 "AT5G23750" [Arabido	0.595	0.603	0.655	8.7e-40
TAIR|locus:2101303	175	AT3G48940 "AT3G48940" [Arabido	0.741	0.868	0.544	4.3e-38
TAIR|locus:2127058	123	AT4G00670 "AT4G00670" [Arabido	0.546	0.910	0.389	6.5e-19
TAIR|locus:2103508	296	AT3G57540 "AT3G57540" [Arabido	0.751	0.520	0.295	1.6e-13
TAIR|locus:2054376	274	AT2G41870 "AT2G41870" [Arabido	0.756	0.565	0.284	1.7e-13
TAIR|locus:2051673	486	AT2G02170 "AT2G02170" [Arabido	0.580	0.244	0.310	2e-12
TAIR|locus:2204197	509	AT1G30320 "AT1G30320" [Arabido	0.517	0.208	0.348	9.2e-11

UNIPROTKB|P93788 P93788 "Remorin" [Solanum tuberosum (taxid:4113)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 104/177 (58%), Positives = 122/177 (68%)

Query:    36 VAEEKAVTQ------LHDQEKPVDDSKALAVVD-QTPDXXXXXXXXXXXXXXXHDRDVAL 88
             VA+EKA+          ++EKP DDSKAL VV+ + P+                DRD  L
Sbjct:    29 VADEKAIVAPALPPPAEEKEKP-DDSKALVVVETKAPEPADEKKEGSI------DRDAVL 81

Query:    89 AEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXXEQLERKK 148
             A V  EKR S IKAWEESEK+KAENKAQKK+SA+ AWEN              EQLE+KK
Sbjct:    82 ARVATEKRVSLIKAWEESEKSKAENKAQKKVSAIGAWENSKKANLEAELKKMEEQLEKKK 141

Query:   149 AEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF 205
             AEY EKMKNK+AL+HKEAEEKRAM+EA+RGED+LKAEE+AAKYRATGT PKK+LG F
Sbjct:   142 AEYTEKMKNKIALLHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGTAPKKILGIF 198

GO:0005886 "plasma membrane" evidence=IDA

GO:0007267 "cell-cell signaling" evidence=NAS

GO:0048032 "galacturonate binding" evidence=IDA

TAIR|locus:2098921 AT3G61260 [Arabidopsis thaliana (taxid:3702)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 99/171 (57%), Positives = 117/171 (68%)

Query:    35 DVAEEKAVTQLHDQEKPVDDSKALAVVDQTPDXXXXXXXXXXXXXXXHDRDVALAEVEKE 94
             DVAEEK   Q    E+  DDSKAL VV++  +                DRDV LA++ KE
Sbjct:    48 DVAEEKI--QNPPPEQIFDDSKALTVVEKPVEEPAPAKPASASL----DRDVKLADLSKE 101

Query:    95 KRESFIKAWEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXXEQLERKKAEYAEK 154
             KR SF++AWEESEK+KAENKA+KK++ V AWEN              EQLE+KKAEYAE+
Sbjct:   102 KRLSFVRAWEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAER 161

Query:   155 MKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF 205
             MKNKVA +HKEAEE+RAM+EA+RGEDVLKAEE AAKYRATG  PK   GCF
Sbjct:   162 MKNKVAAIHKEAEERRAMIEAKRGEDVLKAEETAAKYRATGIVPKATCGCF 212

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2050704 AT2G45820 "AT2G45820" [Arabidopsis thaliana (taxid:3702)]

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 95/171 (55%), Positives = 118/171 (69%)

Query:    35 DVAEEKAVTQLHDQEKPVDDSKALAVVDQTPDXXXXXXXXXXXXXXXHDRDVALAEVEKE 94
             +VA+EK    +H+   PV+ SKALAVV++  +                DRDV LA++EKE
Sbjct:    30 EVADEK----IHNPP-PVE-SKALAVVEKPIEEHTPKKASSGSA----DRDVILADLEKE 79

Query:    95 KRESFIKAWEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXXEQLERKKAEYAEK 154
             K+ SFIKAWEESEK+KAEN+AQKK+S V AWEN              E+LE+KKA+Y EK
Sbjct:    80 KKTSFIKAWEESEKSKAENRAQKKISDVHAWENSKKAAVEAQLRKIEEKLEKKKAQYGEK 139

Query:   155 MKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF 205
             MKNKVA +HK AEEKRAMVEA++GE++LKAEE+ AKYRATG  PK   GCF
Sbjct:   140 MKNKVAAIHKLAEEKRAMVEAKKGEELLKAEEMGAKYRATGVVPKATCGCF 190

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2172793 AT5G23750 "AT5G23750" [Arabidopsis thaliana (taxid:3702)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 80/122 (65%), Positives = 95/122 (77%)

Query:    83 DRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXXE 142
             +RD  LA VE EKR S IKAWEE+EK K ENKA+KKLS++ +WEN              E
Sbjct:    80 NRDAVLARVETEKRMSLIKAWEEAEKCKVENKAEKKLSSIGSWENNKKAAVEAELKKMEE 139

Query:   143 QLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLL 202
             QLE+KKAEY E+MKNK+A +HKEAEEKRAM+EA+RGE++LKAEE+AAKYRATGT PKKL 
Sbjct:   140 QLEKKKAEYVEQMKNKIAQIHKEAEEKRAMIEAKRGEEILKAEELAAKYRATGTAPKKLF 199

Query:   203 GC 204
             GC
Sbjct:   200 GC 201

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0042546 "cell wall biogenesis" evidence=RCA

TAIR|locus:2101303 AT3G48940 "AT3G48940" [Arabidopsis thaliana (taxid:3702)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 86/158 (54%), Positives = 104/158 (65%)

Query:    48 QEKPVDDSKALAVVDQTPDXXXXXXXXXXXXXXXHDRDVALAEVEKEKRESFIKAWEESE 107
             +E+  DDSKA+ +V    +               H RD  L  +E++KR S IKAWEE+E
Sbjct:    24 KEEKSDDSKAIVLVVAAKEPTEDKKVGSV-----H-RDAVLVRLEQDKRISLIKAWEEAE 77

Query:   108 KTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXXEQLERKKAEYAEKMKNKVALVHKEAE 167
             K+K ENKAQKK+S+V AWEN              EQL +KKA Y E+MKNK+A +HKEAE
Sbjct:    78 KSKVENKAQKKISSVGAWENSKKASVEAELKKIEEQLNKKKAHYTEQMKNKIAQIHKEAE 137

Query:   168 EKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF 205
             EKRAM EA+RGEDVLKAEE+AAKYRATGT P KL G F
Sbjct:   138 EKRAMTEAKRGEDVLKAEEMAAKYRATGTAPTKLFGFF 175

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048765 "root hair cell differentiation" evidence=RCA

TAIR|locus:2127058 AT4G00670 "AT4G00670" [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 44/113 (38%), Positives = 69/113 (61%)

Query:    94 EKRESFIKAWEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXXEQLERKKAEYAE 153
             +++   IKAW+E + TK  NK QKKL  ++ WE                +++ KK E +E
Sbjct:    11 DEQSKVIKAWKELKITKVNNKTQKKLLDISGWEKKKTTKIESELARIQRKMDSKKMEKSE 70

Query:   154 KMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKL-LGCF 205
             K++N+ A VH +A++K+A V+ RR +++L AEE AA+++A G  PKK  L CF
Sbjct:    71 KLRNEKAAVHAKAQKKKADVQTRRAQEILDAEEAAARFQAAGKIPKKSSLSCF 123

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

TAIR|locus:2103508 AT3G57540 "AT3G57540" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 47/159 (29%), Positives = 74/159 (46%)

Query:    46 HDQEKPVDDSKALAVV-DQTPDXXXXXXXXXXXXXXXHDRDVALAEVEKEKRESF---IK 101
             H Q  P +DS   A+V D   +                +R V  A V++ KRE     I 
Sbjct:   132 HGQV-PEEDSNPWAIVPDDYNNRDGSENNIVLASSGGQNRMVTTASVQRVKREEVEAKIT 190

Query:   102 AWEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXXEQLERKKAEYAEKMKNKVAL 161
             AW+ ++  K  N+ +++ + +  W N               +LE ++A+  EK +NKVA 
Sbjct:   191 AWQTAKVAKINNRFKRQDAVINGWLNEQVHRANSWMKKIERKLEDRRAKAMEKTQNKVAK 250

Query:   162 VHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKK 200
               ++AEE+RA  E +RG +V +  E+A   RA G  P K
Sbjct:   251 AQRKAEERRATAEGKRGTEVARVLEVANLMRAVGRPPAK 289

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2054376 AT2G41870 "AT2G41870" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 1.7e-13, P = 1.7e-13
 Identities = 45/158 (28%), Positives = 75/158 (47%)

Query:    44 QLHDQEKPVDDSKALAVV-DQTPDXXXXXXXXXXXXXXXHDRDVALAEVEKEKRESFIKA 102
             ++H+     +++  LA+V DQ P                    V    V++E+ E+ I A
Sbjct:   112 RIHEDTDHEEETNPLAIVPDQYPGSGLDPGSDNGPGQSRVGSTVQ--RVKREEVEAKITA 169

Query:   103 WEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXXEQLERKKAEYAEKMKNKVALV 162
             W+ ++  K  N+ +++ + +  W N               +LE +KA+  EK +N VA  
Sbjct:   170 WQTAKLAKINNRFKREDAVINGWFNEQVNKANSWMKKIERKLEERKAKAMEKTQNNVAKA 229

Query:   163 HKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKK 200
              ++AEE+RA  EA+RG +V K  E+A   RA G  P K
Sbjct:   230 QRKAEERRATAEAKRGTEVAKVVEVANLMRALGRPPAK 267

GO:0003677 "DNA binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2051673 AT2G02170 "AT2G02170" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 37/119 (31%), Positives = 58/119 (48%)

Query:    87 ALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXXEQLER 146
             A  +  K   E+   AWEE+EK K   + +++   + AWEN               ++ER
Sbjct:   364 ASLQTSKSVSEARATAWEEAEKAKHMARFRREEMKIQAWENHQKAKSEAEMKKTEVKVER 423

Query:   147 KKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF 205
              K    +++  K+A + ++AEEKRA  EA++     K E+ A + R TG  P  L  CF
Sbjct:   424 IKGRAQDRLMKKLATIERKAEEKRAAAEAKKDHQAAKTEKQAEQIRRTGKVPSLLFSCF 482

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2204197 AT1G30320 "AT1G30320" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 9.2e-11, P = 9.2e-11
 Identities = 38/109 (34%), Positives = 58/109 (53%)

Query:    90 EVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXXEQLERKKA 149
             ++E EKR +   AWEE+EK+K   + +++   + AWE+               ++E+ KA
Sbjct:   392 KIEFEKRAT---AWEEAEKSKHNARYKREEIRIQAWESQEKAKLEAEMRRIEAKVEQMKA 448

Query:   150 EYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTP 198
             E   K+  K+AL  + +EEKRA+ EAR+  D  KA   A   R TG  P
Sbjct:   449 EAEAKIMKKIALAKQRSEEKRALAEARKTRDAEKAVAEAQYIRETGRIP 497

GO:0003677 "DNA binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P93788	REMO_SOLTU	No assigned EC number	0.6320	0.9317	0.9646	N/A	no
Q9M2D8	Y3126_ARATH	No assigned EC number	0.6608	0.8048	0.7783	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	205
pfam03763	112	pfam03763, Remorin_C, Remorin, C-terminal region	2e-27
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.002

>gnl|CDD|190741 pfam03763, Remorin_C, Remorin, C-terminal region

 Score =  100 bits (250), Expect = 2e-27
 Identities = 67/111 (60%), Positives = 82/111 (73%)

Query: 91  VEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAE 150
            +K + ES   AWEE+EK K  NK Q++ + + AWEN KKA  EA+LKKIE +LE+KKAE
Sbjct: 1   SKKSEAESRADAWEEAEKAKINNKYQREEAKIQAWENKKKAKAEAELKKIERKLEKKKAE 60

Query: 151 YAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKL 201
            AEK+KNK+A  HK+AEEKRA  EA+RGE+  KAEE AAK RATG  P KL
Sbjct: 61  AAEKLKNKLAAAHKKAEEKRATAEAKRGEEEAKAEEKAAKIRATGKLPSKL 111

Remorins are plant-specific plasma membrane-associated proteins. In tobacco remorin co-purifies with lipid rafts. Most remorins have a variable, proline-rich C-half and a more conserved N-half that is predicted to form coiled coils. Consistent with this, circular dichroism studies have demonstrated that much of the protein is alpha-helical. Remorins exist in plasma membrane preparations as oligomeric structures and form filaments in vitro. The proteins can bind polyanions including the extracellular matrix component oligogalacturonic acid (OGA). In vitro, remorin in plasma membrane preparations is phosphorylated (principally on threonine residues) in the presence of OGA and thus co-purifies with a protein kinases(s). The biological functions of remorins are unknown but roles as components of the membrane/cytoskeleton are possible. Length = 112

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 38.2 bits (88), Expect = 0.002
 Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 5/145 (3%)

Query: 47   DQEKPVDDSKALAVVDQTPDSAKKKISGEKKISGSHDRDVALAEVEKEKRESFIKAWEES 106
            +++K  D++K  A   +  D AKKK    KK + +  +       E +K     KA  E+
Sbjct: 1299 EEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAE----EAKKAAEAAKAEAEA 1354

Query: 107  EKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEA 166
               +AE   +K  +A    E +KK +  AK K  E++   +  + AE+ K K   + K A
Sbjct: 1355 AADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAA 1414

Query: 167  EEKRAMVEA-RRGEDVLKAEEIAAK 190
              K+   EA ++ E+  KA+E   K
Sbjct: 1415 AAKKKADEAKKKAEEKKKADEAKKK 1439

Length = 2084

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	205
PF03763	111	Remorin_C: Remorin, C-terminal region ; InterPro:	100.0
PF03766	57	Remorin_N: Remorin, N-terminal region ; InterPro:	99.27
PF03763	111	Remorin_C: Remorin, C-terminal region ; InterPro:	96.71

>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides

Probab=100.00  E-value=2.1e-37  Score=243.41  Aligned_cols=108  Identities=56%  Similarity=0.790  Sum_probs=105.6

Q ss_pred             HHHHHHhHHhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028704           93 KEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAM  172 (205)
Q Consensus        93 ~ekr~S~a~AWEeaEkaK~~nR~~reeakI~aWEn~qKAKAEA~mrKiE~KLEkkRA~a~EKm~NKiA~a~kkAEekRA~  172 (205)
                      .+.+++++++||+++++|+++||++++++|++|||+|+++|+++|+++|++||++|++++|||+|+|++||++|+++|++
T Consensus         2 ~~~~~a~a~aWe~ae~aK~~~r~~ree~~I~aWEn~qkaKaea~m~k~E~klEkkra~a~ek~~nkia~~~~~Aee~Ra~   81 (111)
T PF03763_consen    2 KEEVEAKADAWEEAEKAKINNRYEREEAKIQAWENLQKAKAEAEMRKIEEKLEKKRAKALEKMKNKIARAHKKAEEKRAA   81 (111)
T ss_pred             cHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHhhcCCCCCC
Q 028704          173 VEARRGEDVLKAEEIAAKYRATGTTPKK  200 (205)
Q Consensus       173 aeakr~ee~~Ka~EkA~k~R~TGk~P~s  200 (205)
                      ++++|+++++++.++|++||+||++|++
T Consensus        82 aea~r~~~~~k~~ekA~~~R~tG~~P~~  109 (111)
T PF03763_consen   82 AEARRGEEIAKAEEKAAKIRATGKVPSK  109 (111)
T ss_pred             HHHHHhhHHHhHHHHHHHHHhCCCCCcc
Confidence            9999999999999999999999999976

The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].

>PF03766 Remorin_N: Remorin, N-terminal region ; InterPro: IPR005518 Remorin binds both simple and complex galaturonides

Probab=99.27  E-value=2.1e-12  Score=91.75  Aligned_cols=53  Identities=55%  Similarity=0.683  Sum_probs=45.9

Q ss_pred             CCchhhhhcccCCCCCCCCCCCCCceeeccCC-CCcchhccccccCCCCCcchhhHHHHH
Q 028704           33 NNDVAEEKAVTQLHDQEKPVDDSKALAVVDQT-PDSAKKKISGEKKISGSHDRDVALAEV   91 (205)
Q Consensus        33 ~~~~~~e~~~~p~~~~~~~~~~sk~l~~v~~~-~~~~~~~~~~~~~~~gs~~rd~~l~~v   91 (205)
                      ++|++++++++|||. ++..||||+|+||++. ++|++     .+.++||+|||+.|++|
T Consensus         4 ~~dva~ek~~~PpP~-~~k~ddSKAl~vVek~~~epa~-----eK~s~GS~dRDa~LA~v   57 (57)
T PF03766_consen    4 AKDVAEEKSVIPPPA-EEKPDDSKALVVVEKKVPEPAE-----EKPSEGSIDRDAALARV   57 (57)
T ss_pred             chhhccccCCCCCCC-CCCCCccceEEEeeccCCCccc-----cccCCCcchhhhhhhcC
Confidence            589999999998886 6778999999999986 56766     77788999999999975

The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].

>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides

Probab=96.71  E-value=0.045  Score=43.38  Aligned_cols=82  Identities=23%  Similarity=0.320  Sum_probs=64.5

Q ss_pred             HHHHHHHHhHHhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028704           91 VEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKR  170 (205)
Q Consensus        91 v~~ekr~S~a~AWEeaEkaK~~nR~~reeakI~aWEn~qKAKAEA~mrKiE~KLEkkRA~a~EKm~NKiA~a~kkAEekR  170 (205)
                      -..++.++.|.+||..+++|+....++.+.++.-=-..---+..-.|..+..+.|.+|+.+..+-.+.+..+..+|.-.|
T Consensus        22 ~r~~ree~~I~aWEn~qkaKaea~m~k~E~klEkkra~a~ek~~nkia~~~~~Aee~Ra~aea~r~~~~~k~~ekA~~~R  101 (111)
T PF03763_consen   22 NRYEREEAKIQAWENLQKAKAEAEMRKIEEKLEKKRAKALEKMKNKIARAHKKAEEKRAAAEARRGEEIAKAEEKAAKIR  101 (111)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHH
Confidence            34566789999999999999999999999876432222223444566677889999999999999999999999998887


Q ss_pred             HH
Q 028704          171 AM  172 (205)
Q Consensus       171 A~  172 (205)
                      ..
T Consensus       102 ~t  103 (111)
T PF03763_consen  102 AT  103 (111)
T ss_pred             hC
Confidence            53

The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	205
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	4e-05

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 41.5 bits (96), Expect = 4e-05
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)

Query: 3  EEQ-VKKVEAE-TPAAPAPAPALA 24
          E+Q +KK++A     A   APALA
Sbjct: 18 EKQALKKLQASLKLYADDSAPALA 41

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00