Citrus Sinensis ID: 028726

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-----
Protein Sequence
MALVTTATETLCLKNPFANLLTPSFPIAAAAAATSGFLPCALSAIMKERRGLLCRSFALKNEVIETADGAQQVEEEEEKKEMEKPRETLLYSIAPLPLLFDAALPGAGTVRALFGPFVELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDKPIFER
Secondary Structure (PSIPRED)
cccccccHHHHHccccccccccccccHHHHHHHHccccHHHHHHHHHHHHccccccccccHHHHHHHccccccHHHHHHHHHccccccEEEccccHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEcccEEEEcEEEEEcccHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEccccccccccccHHccccccHHHHHHHHcccccHHHHHHHHHcccccccccccccccHHHHHcccccccHcHcHHHHHccccEEEEccccHHHHHHHHccccHHHHHHHHHHHHHHHHccccccEEEcccHHHHEEEEEEHHHHHHHHccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MALVTTATEtlclknpfanlltpsfpIAAAAAATSGFLPCALSAIMKERRGLLCRSFALKNEVIETADGAQQVEEEEEKKEMEKPRETllysiaplpllfdaalpgagtvralfGPFVELVkswnlpdwlvhwghpgNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKakdlhpkllggMFFFFAlgatggitslltsdkpifer
Flexible Loop (DISEMBL)
MALVTTATETLCLKNPFANLLTPSFPIAAAAAATSGFLPCALSAIMKERRGLLCRSFALKNEVIEtadgaqqveeeeekkemekprETLLYSIAPLPLLFDAALPGAGTVRALFGPFVELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGItslltsdkpifer
Low Complexity Region (SEG)
MALVTTATETLCLKNPFANLLTPSFPIaaaaaaTSGFLPCALSAIMKERRGLLCRSFALKNEVIETADGAQQVeeeeekkemekPRETLLYSIaplpllfdaalpgaGTVRALFGPFVELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKllggmffffalgatggITSLLTSDKPIFER
Disordered region (IsUnstruct)
***VTTATETLCLKNPFANLLTPSFPIAAAAAATSGFLPCALSAIMKERRGLLCRSFALKNEVI***********************TLLYSIAPLPLLFDAALPGAGTVRALFGPFVELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDME**AKAKDLHPKLLGGMFFFFALGATGGITSLLT********
Disordered Region (DISOPRED)
*******TETLCLKNPFANLLTPSFPIAAAAAATSGFLPCALSAIMKERRGLLCRSFALKNEV**************************LYSIAPLPLLFDAALPGAGTVRALFGPFVELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRY**************PKLLGGMFFFFALGATGGITSLLTSDKP****
Disordered Region (DISEMBL)
MALVTTATETLCLKNPFANLLTPSFPIAAAAAATSGFLPCALSAIMKERRGLLCRSFALKNEVIETAD*****************RETLLYSIAPLPLLFDAALPGAGTVRALFGPFVELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDKPIFER
Disordered Region (DISPRO)
*ALVTTATETLCLKNPFANLLTPSFPIAAAAAATSGFLPCALSAIMKERRGLLCRSFALKNEVIETADGAQ*V**E*EKKEMEKPRETLLYSIAPLPLLFDAALPGAGTVRALFGPFVELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDKPI***
Transmembrane Helix (TMHMM)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MALVTTATETLCLKNPFANLLTPSFPIAAAAAATSGFLPCALSAIMKERRGLLCRSFALKNEVIETADGAQQVEEEEEKKEMEKPRETLLYSIAPLPLLFDAALPGAGTVRALFGPFVELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDKPIFER
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
224140263	182	predicted protein [Populus trichocarpa]	0.6	0.675	0.886	2e-57
449451050	255	PREDICTED: uncharacterized protein LOC10	0.712	0.572	0.753	1e-56
449482416	255	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.712	0.572	0.746	7e-56
225441197	260	PREDICTED: uncharacterized protein LOC10	0.756	0.596	0.754	7e-56
255556892	263	conserved hypothetical protein [Ricinus	0.975	0.760	0.649	2e-53
356548264	243	PREDICTED: uncharacterized protein LOC10	0.653	0.551	0.748	3e-51
297739961	182	unnamed protein product [Vitis vinifera]	0.6	0.675	0.869	7e-51
334184737	255	uncharacterized protein [Arabidopsis tha	0.717	0.576	0.708	2e-50
18404264	256	uncharacterized protein [Arabidopsis tha	0.717	0.574	0.708	2e-50
297827189	258	hypothetical protein ARALYDRAFT_482670 [	0.658	0.523	0.726	1e-46

>gi|224140263|ref|XP_002323503.1| predicted protein [Populus trichocarpa] gi|222868133|gb|EEF05264.1| predicted protein [Populus trichocarpa]

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 109/123 (88%), Positives = 115/123 (93%)

Query: 82  MEKPRETLLYSIAPLPLLFDAALPGAGTVRALFGPFVELVKSWNLPDWLVHWGHPGNMAV 141
           M+KP+ TLLYS  PLPLLF AALPGA TVR+LFGPFVE+VKS NLPDWLVHWGHPGNMAV
Sbjct: 1   MDKPKMTLLYSFIPLPLLFTAALPGAATVRSLFGPFVEIVKSLNLPDWLVHWGHPGNMAV 60

Query: 142 VLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDKP 201
           VLFAMGGYGTYLGF IR+SDD+EEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDK 
Sbjct: 61  VLFAMGGYGTYLGFRIRFSDDVEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDKT 120

Query: 202 IFE 204
           IFE
Sbjct: 121 IFE 123

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451050|ref|XP_004143275.1| PREDICTED: uncharacterized protein LOC101222568 [Cucumis sativus]

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 110/146 (75%), Positives = 122/146 (83%)

Query: 59  LKNEVIETADGAQQVEEEEEKKEMEKPRETLLYSIAPLPLLFDAALPGAGTVRALFGPFV 118
           L+  V      A+  E  + ++  E+  E  LYS++P PLLF AALPGAGTVR+LFGPFV
Sbjct: 51  LRTSVRFNPSFARNDEFGDFEETKEETSEMRLYSLSPFPLLFIAALPGAGTVRSLFGPFV 110

Query: 119 ELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLG 178
           ELVKSWNLP+WLVHWGHPGNMAVVLFAMGGYGTYLGF IRYSDD+EEKA AKDLHPKLLG
Sbjct: 111 ELVKSWNLPEWLVHWGHPGNMAVVLFAMGGYGTYLGFRIRYSDDVEEKAYAKDLHPKLLG 170

Query: 179 GMFFFFALGATGGITSLLTSDKPIFE 204
           GMFFFFALGATGG+TSLLTSDKPI E
Sbjct: 171 GMFFFFALGATGGVTSLLTSDKPILE 196

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449482416|ref|XP_004156275.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101230564 [Cucumis sativus]

 Score =  222 bits (565), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 109/146 (74%), Positives = 121/146 (82%)

Query: 59  LKNEVIETADGAQQVEEEEEKKEMEKPRETLLYSIAPLPLLFDAALPGAGTVRALFGPFV 118
           L+  V      A+  E  + ++  E+  E  LYS++P PLLF AALPGAGTVR+LFGPFV
Sbjct: 51  LRTSVRFNPSFARNDEFGDFEETKEETSEMRLYSLSPFPLLFIAALPGAGTVRSLFGPFV 110

Query: 119 ELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLG 178
           ELVKSWNLP+WLVHWGHPGNMAVVLFAMGGYGTYLGF IRYSDD+EEKA AKDLHPKLLG
Sbjct: 111 ELVKSWNLPEWLVHWGHPGNMAVVLFAMGGYGTYLGFRIRYSDDVEEKAYAKDLHPKLLG 170

Query: 179 GMFFFFALGATGGITSLLTSDKPIFE 204
           GM FFFALGATGG+TSLLTSDKPI E
Sbjct: 171 GMXFFFALGATGGVTSLLTSDKPILE 196

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441197|ref|XP_002266366.1| PREDICTED: uncharacterized protein LOC100255653 [Vitis vinifera]

 Score =  222 bits (565), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 117/155 (75%), Positives = 131/155 (84%)

Query: 50  RGLLCRSFALKNEVIETADGAQQVEEEEEKKEMEKPRETLLYSIAPLPLLFDAALPGAGT 109
           R L   SF LK++  E      Q + E+E+++M + RETLLYS  PLPLL  AALPGAG 
Sbjct: 47  RPLFTPSFVLKDDHCEVIATFDQDKVEDEEEDMREGRETLLYSFTPLPLLLVAALPGAGA 106

Query: 110 VRALFGPFVELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKA 169
           VR+LFGPFVELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGF IR+S+D+EEKAKA
Sbjct: 107 VRSLFGPFVELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFRIRFSEDVEEKAKA 166

Query: 170 KDLHPKLLGGMFFFFALGATGGITSLLTSDKPIFE 204
           KDLHPKLL GMFFFFALGATGG+TSLLTSD+PIFE
Sbjct: 167 KDLHPKLLAGMFFFFALGATGGVTSLLTSDRPIFE 201

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556892|ref|XP_002519479.1| conserved hypothetical protein [Ricinus communis] gi|223541342|gb|EEF42893.1| conserved hypothetical protein [Ricinus communis]

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 135/208 (64%), Positives = 151/208 (72%), Gaps = 8/208 (3%)

Query: 1   MALVTTATETLCLKNPFANLLTPSFPIAAAAA----ATSGFLPCALSAIMKERRGLLCRS 56
           MA+V  +   L    P  +    SFP  + AA      +   PCALSA  +  R L   S
Sbjct: 1   MAMVNASLSPLKNSIPLLSHSFSSFPGTSTAAFFKTPLNESFPCALSACTRSSRCLF-PS 59

Query: 57  FALKNEVIETADGAQQVEEEEEKKEMEKPRETLLYSIAPLPLLFDAALPGAGTVRALFGP 116
            A+KN+V E    + + EE E  +E+    ET LYS  PLPLL  AALPGAGTVR+L GP
Sbjct: 60  PAIKNKVPEADYRSDEDEEVEHVEELT---ETHLYSFTPLPLLLVAALPGAGTVRSLIGP 116

Query: 117 FVELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKL 176
           FVELVKSWNLP+WLVHWGHPGNMAVVLFAMGGYGTYLGF IR+SDD+EEKAKAKDLHPKL
Sbjct: 117 FVELVKSWNLPEWLVHWGHPGNMAVVLFAMGGYGTYLGFRIRFSDDVEEKAKAKDLHPKL 176

Query: 177 LGGMFFFFALGATGGITSLLTSDKPIFE 204
           LGGMFFFFALGATGGITSLLTSDKPIFE
Sbjct: 177 LGGMFFFFALGATGGITSLLTSDKPIFE 204

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548264|ref|XP_003542523.1| PREDICTED: uncharacterized protein LOC100793792 [Glycine max]

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 101/135 (74%), Positives = 113/135 (83%), Gaps = 1/135 (0%)

Query: 71  QQVEEEEEKKEMEKPRETLLYSIAPLPLLFDAAL-PGAGTVRALFGPFVELVKSWNLPDW 129
           Q    E E  +  +  + +L+S +P PLL  AAL PG+  V ++FGPFVELVKSWNLPDW
Sbjct: 50  QDSPLELELVKSTQNTQIILHSFSPFPLLCAAALLPGSEAVTSVFGPFVELVKSWNLPDW 109

Query: 130 LVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGAT 189
           LVHWGHPGNMAVVLFAMGGYGTYLGF IRYSD++EEKAKAKDLHPKLL GMFFFFALGAT
Sbjct: 110 LVHWGHPGNMAVVLFAMGGYGTYLGFRIRYSDNLEEKAKAKDLHPKLLAGMFFFFALGAT 169

Query: 190 GGITSLLTSDKPIFE 204
           GGIT+LLTSDKPIFE
Sbjct: 170 GGITALLTSDKPIFE 184

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739961|emb|CBI30143.3| unnamed protein product [Vitis vinifera]

 Score =  205 bits (522), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 107/123 (86%), Positives = 114/123 (92%)

Query: 82  MEKPRETLLYSIAPLPLLFDAALPGAGTVRALFGPFVELVKSWNLPDWLVHWGHPGNMAV 141
           M + RETLLYS  PLPLL  AALPGAG VR+LFGPFVELVKSWNLPDWLVHWGHPGNMAV
Sbjct: 1   MREGRETLLYSFTPLPLLLVAALPGAGAVRSLFGPFVELVKSWNLPDWLVHWGHPGNMAV 60

Query: 142 VLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDKP 201
           VLFAMGGYGTYLGF IR+S+D+EEKAKAKDLHPKLL GMFFFFALGATGG+TSLLTSD+P
Sbjct: 61  VLFAMGGYGTYLGFRIRFSEDVEEKAKAKDLHPKLLAGMFFFFALGATGGVTSLLTSDRP 120

Query: 202 IFE 204
           IFE
Sbjct: 121 IFE 123

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334184737|ref|NP_973615.2| uncharacterized protein [Arabidopsis thaliana] gi|330254220|gb|AEC09314.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 107/151 (70%), Positives = 123/151 (81%), Gaps = 4/151 (2%)

Query: 55  RSFALKNEVIETADGAQQVEEE-EEKKEMEKPRETLLYSIAPLPLLFDAALPGAGTVRAL 113
           R   L        DG +++E   +++ E+   RETL+ S++PLPLL  A+LPGA TVR++
Sbjct: 50  RKIPLTPACSSIVDGDEEIEARGDDENEI---RETLMLSVSPLPLLLVASLPGAETVRSV 106

Query: 114 FGPFVELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLH 173
           FGP VE+VKS NLPDWLVHWGHPGNMAVVLFAMGGYGTYLGF IRYSDD+EEKAKAKDLH
Sbjct: 107 FGPVVEIVKSLNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFRIRYSDDIEEKAKAKDLH 166

Query: 174 PKLLGGMFFFFALGATGGITSLLTSDKPIFE 204
           PKLL GMFFFFALGATGG+ SLLTSDKPIFE
Sbjct: 167 PKLLAGMFFFFALGATGGVISLLTSDKPIFE 197

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18404264|ref|NP_565853.1| uncharacterized protein [Arabidopsis thaliana] gi|20197943|gb|AAM15322.1| Expressed protein [Arabidopsis thaliana] gi|21555809|gb|AAM63938.1| unknown [Arabidopsis thaliana] gi|26983860|gb|AAN86182.1| unknown protein [Arabidopsis thaliana] gi|330254219|gb|AEC09313.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 107/151 (70%), Positives = 123/151 (81%), Gaps = 4/151 (2%)

Query: 55  RSFALKNEVIETADGAQQVEEE-EEKKEMEKPRETLLYSIAPLPLLFDAALPGAGTVRAL 113
           R   L        DG +++E   +++ E+   RETL+ S++PLPLL  A+LPGA TVR++
Sbjct: 50  RKIPLTPACSSIVDGDEEIEARGDDENEI---RETLMLSVSPLPLLLVASLPGAETVRSV 106

Query: 114 FGPFVELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLH 173
           FGP VE+VKS NLPDWLVHWGHPGNMAVVLFAMGGYGTYLGF IRYSDD+EEKAKAKDLH
Sbjct: 107 FGPVVEIVKSLNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFRIRYSDDIEEKAKAKDLH 166

Query: 174 PKLLGGMFFFFALGATGGITSLLTSDKPIFE 204
           PKLL GMFFFFALGATGG+ SLLTSDKPIFE
Sbjct: 167 PKLLAGMFFFFALGATGGVISLLTSDKPIFE 197

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297827189|ref|XP_002881477.1| hypothetical protein ARALYDRAFT_482670 [Arabidopsis lyrata subsp. lyrata] gi|297327316|gb|EFH57736.1| hypothetical protein ARALYDRAFT_482670 [Arabidopsis lyrata subsp. lyrata]

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 101/139 (72%), Positives = 116/139 (83%), Gaps = 4/139 (2%)

Query: 68  DGAQQVEEEEEKKEMEKPRETLLYSIAPLPLLFDAALPGAG--TVRALFGPFVELVKSWN 125
           +G + VE   + +   + +ETL+ S++PLPLL  A+LPG    TV ++FGP VE+VKS N
Sbjct: 63  NGDESVEARGDDEN--EIKETLMLSVSPLPLLLVASLPGGNNETVTSVFGPVVEIVKSLN 120

Query: 126 LPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFA 185
           LPDWLVHWGHPGNMAVVLFAMGGYGTYLGF IRYSDD+EEKAKAKDLHPKLL GMFFFFA
Sbjct: 121 LPDWLVHWGHPGNMAVVLFAMGGYGTYLGFRIRYSDDIEEKAKAKDLHPKLLAGMFFFFA 180

Query: 186 LGATGGITSLLTSDKPIFE 204
           LGATGG+ SLLTSDKPIFE
Sbjct: 181 LGATGGVISLLTSDKPIFE 199

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
TAIR|locus:505006302	256	AT2G36885 "AT2G36885" [Arabido	0.580	0.464	0.638	5.7e-36

TAIR|locus:505006302 AT2G36885 "AT2G36885" [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 76/119 (63%), Positives = 83/119 (69%)

Query:    86 RETLLYSIXXXXXXXXXXXXXXGTVRALFGPFVELVKSWNLPDWLVHWGHPGNMAVVLFA 145
             RETL+ S+               TVR++FGP VE+VKS NLPDWLVHWGHPGNMAVVLFA
Sbjct:    79 RETLMLSVSPLPLLLVASLPGAETVRSVFGPVVEIVKSLNLPDWLVHWGHPGNMAVVLFA 138

Query:   146 MGGYGTYLGFCIRYSDDMEEKAKAKDLHPKXXXXXXXXXXXXXXXXITSLLTSDKPIFE 204
             MGGYGTYLGF IRYSDD+EEKAKAKDLHPK                + SLLTSDKPIFE
Sbjct:   139 MGGYGTYLGFRIRYSDDIEEKAKAKDLHPKLLAGMFFFFALGATGGVISLLTSDKPIFE 197


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.138   0.431    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      205       158   0.00085  106 3  11 22  0.46    31
                                                     30  0.43    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  153 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.31u 0.10s 11.41t   Elapsed:  00:00:00
  Total cpu time:  11.31u 0.10s 11.41t   Elapsed:  00:00:00
  Start:  Sat May 11 08:32:43 2013   End:  Sat May 11 08:32:43 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	205
pfam13301	144	pfam13301, DUF4079, Protein of unknown function (D	9e-08

>gnl|CDD|222033 pfam13301, DUF4079, Protein of unknown function (DUF4079)

 Score = 49.2 bits (118), Expect = 9e-08
 Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 8/79 (10%)

Query: 134 GHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEE--------KAKAKDLHPKLLGGMFFFFA 185
            HP  M +++F +GGY  YLG+  R     E         K K +  H +L   +     
Sbjct: 5   IHPVLMGLLVFPVGGYAAYLGWQARRRRLAENPGTRKELVKGKFRLRHYRLGSALLALMV 64

Query: 186 LGATGGITSLLTSDKPIFE 204
           LG  GG       +  +F 
Sbjct: 65  LGLLGGQLGTYRRNGKLFW 83

This is an uncharacterized family of proteins. Length = 144

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	205
PF13301	175	DUF4079: Protein of unknown function (DUF4079)	99.77
PF03188	137	Cytochrom_B561: Eukaryotic cytochrome b561; InterP	89.47
PF04238	133	DUF420: Protein of unknown function (DUF420); Inte	85.84
PF02447	441	GntP_permease: GntP family permease; InterPro: IPR	82.34
PRK13681	35	hypothetical protein; Provisional	81.53
cd08554	131	Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome	81.35

>PF13301 DUF4079: Protein of unknown function (DUF4079)

Probab=99.77  E-value=3.2e-19  Score=147.28  Aligned_cols=74  Identities=34%  Similarity=0.508  Sum_probs=68.7

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhhceeeeeeCCHHH---------------------------------------HHHhhhh
Q 028726          132 HWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEE---------------------------------------KAKAKDL  172 (205)
Q Consensus       132 hwGHPlmMawVLLAmG~YA~YLGwQiRrtad~Ev---------------------------------------k~K~r~r  172 (205)
                      .++||++|+.++|++++|+.|+|||+|+..+.+.                                       +.|+|++
T Consensus         3 ~liHP~lm~~~vf~~~~~~~~lG~q~R~rR~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~r~~   82 (175)
T PF13301_consen    3 ALIHPVLMGLLVFPVGGYAIYLGWQWRQRRLQENHGRWLTGGVVVAVLIALAYSIARAIFLILALTGTRKELVKLKARDR   82 (175)
T ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhhccccccchhcccchhhHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            5799999977779999999999999999965555                                       5899999


Q ss_pred             chhhHHHHHHHHHHhhhhhhhHHhhCCCCCcCC
Q 028726          173 HPKLLGGMFFFFALGATGGITSLLTSDKPIFER  205 (205)
Q Consensus       173 H~QLgs~LLaFMVLG~iGGMlSLvmQ~kPIfES  205 (205)
                      |+|+|++|++||++|++||++++.||++++|+|
T Consensus        83 H~~~g~~ll~~~~L~~lGG~~~~~~~~~~lf~s  115 (175)
T PF13301_consen   83 HYRLGFALLAFMGLGALGGQLGTYRQNGKLFWS  115 (175)
T ss_pred             HHHHHHHHHHHHHHHHHcchHHHHHcCCCCccC
Confidence            999999999999999999999999999999987

>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []

Probab=89.47  E-value=0.86  Score=34.32  Aligned_cols=71  Identities=15%  Similarity=-0.006  Sum_probs=53.9

Q ss_pred             CCchhhhhhhhHHHHHHHHHHHHHHhhhceeeeeeCCHHHHHHhhhhchhhHHHHHHHHHHhhhhhhhHHhhCCC
Q 028726          126 LPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDK  200 (205)
Q Consensus       126 LPE~IkhwGHPlmMawVLLAmG~YA~YLGwQiRrtad~Evk~K~r~rH~QLgs~LLaFMVLG~iGGMlSLvmQ~k  200 (205)
                      .+....-+.|-+++ ++-++++.-+.++.+.-+...   .+..++..|..+|-..+.++++=.+.|.++..+++.
T Consensus        29 ~~~~~~~~~H~~lq-~l~~~~~~~G~~~~~~~~~~~---~~~h~~s~H~~lG~~~~~l~~~Q~~~G~~~~~~~~~   99 (137)
T PF03188_consen   29 KSRKWWFRIHWILQ-VLALVFAIIGFVAIFINKNRN---GKPHFKSWHSILGLATFVLALLQPLLGFFRFFMPGL   99 (137)
T ss_pred             cccchHHHHHHHHH-HHHHHHHHHHHHHHHHhcccc---CCCCCCCchhhhhHHHHHHHHHHHHHHHHHHccCCC
Confidence            45555677898888 677777777777776544322   346788899999999999999999999998876443

It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane

>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices

Probab=85.84  E-value=1.6  Score=35.24  Aligned_cols=53  Identities=21%  Similarity=0.141  Sum_probs=43.6

Q ss_pred             hhhhHHHHHHHHHHHHHHhhhceeeeeeCCHHHHHHhhhhchhhHHHHHHHHHHhhhhhhhHHhh
Q 028726          133 WGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLT  197 (205)
Q Consensus       133 wGHPlmMawVLLAmG~YA~YLGwQiRrtad~Evk~K~r~rH~QLgs~LLaFMVLG~iGGMlSLvm  197 (205)
                      ..|=++ |.+.+.+.+|+.|.|++.|           ..+|+|+|.|-+-....-++.|++--+|
T Consensus        79 ~~Hi~L-A~~~~pL~l~tl~~a~~~~-----------~~~Hrki~r~t~piWlyvsvTGvvVYlm  131 (133)
T PF04238_consen   79 ISHIIL-AIVALPLVLYTLYRALRGR-----------FTRHRKIGRWTFPIWLYVSVTGVVVYLM  131 (133)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHcC-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345444 4888999999999999984           6799999999999999988888875544

>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake

Probab=82.34  E-value=1.5  Score=41.31  Aligned_cols=61  Identities=21%  Similarity=0.041  Sum_probs=37.8

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHhh-hceeeeeeCCHHH-HHHhhhhchhhHHHHHHHHHHhhhhhhhH
Q 028726          129 WLVHWGHPGNMAVVLFAMGGYGTY-LGFCIRYSDDMEE-KAKAKDLHPKLLGGMFFFFALGATGGITS  194 (205)
Q Consensus       129 ~IkhwGHPlmMawVLLAmG~YA~Y-LGwQiRrtad~Ev-k~K~r~rH~QLgs~LLaFMVLG~iGGMlS  194 (205)
                      ++.-.|+|..-   |+.-.+++.| +|++  |..+.|+ .+-....=.+.|.++|..=+-|+.|+++.
T Consensus       258 ~~~flG~p~iA---Llig~l~a~~~l~~~--~~~~~~~~~~~~~~al~~~g~IlLItgaGGafg~vl~  320 (441)
T PF02447_consen  258 ILSFLGDPNIA---LLIGVLIALYLLGRR--RGMSREEVMKWLEKALKPAGMILLITGAGGAFGQVLK  320 (441)
T ss_pred             HHHHhCCcHHH---HHHHHHHHHHHHhhh--cCCCHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Confidence            33455677533   4444445554 4543  3333343 35566667788999999889999998874

Escherichia coli contains several members of this family including GntU, a low affinity transporter [] and GntT, a high affinity transporter [].; GO: 0015128 gluconate transmembrane transporter activity, 0035429 gluconate transmembrane transport, 0016020 membrane

>PRK13681 hypothetical protein; Provisional

Probab=81.53  E-value=0.7  Score=30.99  Aligned_cols=17  Identities=29%  Similarity=0.796  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHhhhhhhh
Q 028726          177 LGGMFFFFALGATGGIT  193 (205)
Q Consensus       177 gs~LLaFMVLG~iGGMl  193 (205)
                      -..+|++|++|.+|||+
T Consensus         8 ~i~lfalmAiGgigGvm   24 (35)
T PRK13681          8 VIALFLLMAIGGIGGVM   24 (35)
T ss_pred             HHHHHHHHHhcCcccee
Confidence            35689999999999986

>cd08554 Cyt_b561 Eukaryotic cytochrome b(561)

Probab=81.35  E-value=4.8  Score=30.51  Aligned_cols=69  Identities=19%  Similarity=0.130  Sum_probs=51.8

Q ss_pred             chhhhhhhhHHHHHHHHHHHHHHhhhceeeeeeCCHHHHHHhhhhchhhHHHHHHHHHHhhhhhhhHHhhCCC
Q 028726          128 DWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDK  200 (205)
Q Consensus       128 E~IkhwGHPlmMawVLLAmG~YA~YLGwQiRrtad~Evk~K~r~rH~QLgs~LLaFMVLG~iGGMlSLvmQ~k  200 (205)
                      .....+.|=+++ ++-+.++.-+.++++.-+..   ..+..+...|..+|-..+.++++=.++|......++.
T Consensus        32 ~~~~~~~H~~l~-~l~~~~~~~G~~~~~~~~~~---~~~~h~~s~Hs~lGl~~~~l~~~q~~~G~~~~~~~~~  100 (131)
T cd08554          32 KRALKLLHAILH-LLAFVLGLVGLLAVFLFHNA---GGIANLYSLHSWLGLATVLLFLLQFLSGFVLFLLPLL  100 (131)
T ss_pred             hhHHHHHHHHHH-HHHHHHHHHHHHHHHHhccc---cCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            334467788888 67777777777777765531   1234678899999999999999999999998765554

Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	205
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	7e-04

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 37.6 bits (86), Expect = 7e-04
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 10/36 (27%)

Query: 78  EKKEMEKPRETL-LYSIAPLPLLFDAALPGAGTVRA 112
           EK+ ++K + +L LY  A      D+A P A  ++A
Sbjct: 18  EKQALKKLQASLKLY--AD-----DSA-P-ALAIKA 44

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00