Citrus Sinensis ID: 028753

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200----
Protein Sequence
MKIFRFVAAFIVPSCYVIFLPFVGCLSNDEFSKSRNHKSIQENLYKMGPQTASHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFENSFNNNHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKAYLIKHQEALRFGLYSSQFRSP
Secondary Structure (PSIPRED)
cccccHHHHHcccccEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHEEEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEEcccc
Coil and Loop (DISEMBL)
MKIFRFVAAFIVPSCYVIFlpfvgclsndefsksrnhKSIQEnlykmgpqtasHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFENSFNNNHQRLGLALYGALWLQVSIgffkpprgnkrrsMWYVVHWLLGTAISLVGIINIYTGLKAYLIKHQEAlrfglyssqfrsp
Flexible Loop (DISEMBL)
MKIFRFVAAFIVPSCYVIFLPFVGCLSNDEFSKSRNHKSIQENLYKMGPQTASHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFENSFNNNHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKAYLIKHQEALRFGLYSSQFRSP
Low Complexity Region (SEG)
MKIFRFVAAFIVPSCYVIFLPFVGCLSNDEFSKSRNHKSIQENLYKMGPQTASHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFENSFNNNHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKAYLIKHQEALRFGLYSSQFRSP
Disordered region (IsUnstruct)
**IFRFVAAFIVPSCYVIFLPFVGCLSND**************LYKMGPQTASHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFENSFNNNHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKAYLIKHQEALRFGLY*******
Disordered Region (DISOPRED)
*****FVAAFIVPSCYVIFLP******************************ASHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFENSFNNNHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKAYLIKHQEALRFGLYSSQFRSP
Disordered Region (DISEMBL)
MKIFRFVAAFIVPSCYVIFLPFVGCLSNDEFSKSRNHKSIQENLYKMGPQTASHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFENSFNNNHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKAYLIKHQEALRFGLYSSQFRSP
Disordered Region (DISPRO)
MKIFRFVAAFIVPSCYVIFLPFVGCL******************YKMGPQTASHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFENSFNNNHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKAYLIKHQEALRFGLYSSQFRS*
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKIFRFVAAFIVPSCYVIFLPFVGCLSNDEFSKSRNHKSIQENLYKMGPQTASHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFENSFNNNHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKAYLIKHQEALRFGLYSSQFRSP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	204	2.2.26 [Sep-21-2011]
Q6ZNA5	592	Ferric-chelate reductase	no	no	0.627	0.216	0.240	0.0002
Q6INU7	590	Putative ferric-chelate r	N/A	no	0.627	0.216	0.218	0.0002

>sp|Q6ZNA5|FRRS1_HUMAN Ferric-chelate reductase 1 OS=Homo sapiens GN=FRRS1 PE=2 SV=2

 Score = 45.8 bits (107), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 5/133 (3%)

Query: 55  IAVHGLLLWASMGFLTPVGILTIRMSNKVDS---VIKARVFVYLHIILQMLSVVLATVGA 111
           + VHG L++ +      +G+L  R    V S   ++    +  +H +L   + VL  +  
Sbjct: 370 LKVHGALMFVAWMTTVSIGVLVARFFKPVWSKAFLLGEAAWFQVHRMLMFTTTVLTCIAF 429

Query: 112 IMSI--RNFENSFNNNHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTAI 169
           +M    R   +     H  LG  +     LQ  +  F+PP  + RR M+   HW +GTA 
Sbjct: 430 VMPFIYRGGWSRHAGYHPYLGCIVMTLAVLQPLLAVFRPPLHDPRRQMFNWTHWSMGTAA 489

Query: 170 SLVGIINIYTGLK 182
            ++ +  ++ G+ 
Sbjct: 490 RIIAVAAMFLGMD 502

Ferric-chelate reductases reduce Fe(3+) to Fe(2+) before its transport from the endosome to the cytoplasm.
Homo sapiens (taxid: 9606)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -

>sp|Q6INU7|FRRS1_XENLA Putative ferric-chelate reductase 1 OS=Xenopus laevis GN=frrs1 PE=2 SV=1

 Score = 45.8 bits (107), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/133 (21%), Positives = 60/133 (45%), Gaps = 5/133 (3%)

Query: 55  IAVHGLLLWASMGFLTPVGILTIRMSNKV---DSVIKARVFVYLHIILQMLSVVLATVGA 111
           I +HG +++ +      +G++  R    V    S+   +++  +H  L + +V L  V  
Sbjct: 369 IKLHGAMMFIAWMTTVSIGVIIARFFKPVWPTSSLFGEKIWFQIHRCLMITTVFLTVVAF 428

Query: 112 IMSI--RNFENSFNNNHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTAI 169
           ++    R + +     H  LG+ +     LQ  +  F+PP    RR ++   HW  GTA 
Sbjct: 429 VLPFIYRGYFSKRAGYHPHLGVTVMILTVLQPVLAVFRPPPQTHRRGIFNWTHWATGTAA 488

Query: 170 SLVGIINIYTGLK 182
            ++ +  ++ G+ 
Sbjct: 489 RIIAVAAMFLGMD 501

Putative ferric-chelate reductases reduce Fe(3+) to Fe(2+) before its transport from the endosome to the cytoplasm.

Xenopus laevis (taxid: 8355)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
147811198	909	hypothetical protein VITISV_030020 [Viti	0.931	0.209	0.545	2e-59
357476429	344	Cytochrome B561-related protein [Medicag	0.916	0.543	0.539	2e-52
356510788	350	PREDICTED: uncharacterized protein LOC10	0.882	0.514	0.576	1e-51
356524961	266	PREDICTED: uncharacterized protein LOC10	0.882	0.676	0.570	1e-50
225463464	529	PREDICTED: uncharacterized protein LOC10	0.730	0.281	0.590	5e-48
297800240	558	hypothetical protein ARALYDRAFT_493040 [	0.813	0.297	0.572	7e-48
15236824	545	cytochrome b561/ferric reductase transme	0.808	0.302	0.551	8e-48
110737878	284	hypothetical protein [Arabidopsis thalia	0.794	0.570	0.555	1e-47
225446813	247	PREDICTED: putative ferric-chelate reduc	0.745	0.615	0.592	4e-46
356524220	252	PREDICTED: uncharacterized protein LOC10	0.921	0.746	0.492	1e-45

>gi|147811198|emb|CAN70161.1| hypothetical protein VITISV_030020 [Vitis vinifera]

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 107/196 (54%), Positives = 145/196 (73%), Gaps = 6/196 (3%)

Query: 1   MKIFRFVAAFIVPSCYV--IFLPFVGCLSNDEFSKSRNHKSIQENLYKMGPQTASHIAVH 58
           M IF+ + +F +P+C+V  + L FVGC S++    S+ HK I  N++K+ PQ    I +H
Sbjct: 1   MPIFQKLLSFTIPACFVLLVLLSFVGCSSHE----SKGHKRINNNVHKLSPQMTFDITLH 56

Query: 59  GLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNF 118
           G+LLWAS GFL P+G++TIRM N+ +   K RV  Y+H  LQ+LSV++AT GAIMSI+NF
Sbjct: 57  GVLLWASTGFLMPIGVITIRMCNREECGRKVRVIFYVHTTLQVLSVLIATAGAIMSIKNF 116

Query: 119 ENSFNNNHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTAISLVGIINIY 178
           ENSFNN HQR+GLALYGA+W+Q  IGF +P R +K RS+WY VHW+LGT +S+VG+INIY
Sbjct: 117 ENSFNNYHQRIGLALYGAIWVQALIGFCRPGRRSKGRSVWYFVHWILGTTVSVVGMINIY 176

Query: 179 TGLKAYLIKHQEALRF 194
           TGL+AY  K   ++R 
Sbjct: 177 TGLEAYQKKTSRSIRL 192

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476429|ref|XP_003608500.1| Cytochrome B561-related protein [Medicago truncatula] gi|355509555|gb|AES90697.1| Cytochrome B561-related protein [Medicago truncatula]

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 103/191 (53%), Positives = 137/191 (71%), Gaps = 4/191 (2%)

Query: 8   AAFIVPSCYVIFLPFVGCLSNDEFSKSRNHKSIQENLYKMGPQTASHIAVHGLLLWASMG 67
           A F++ S Y   +PF  C +  E ++  + ++    ++K+  Q AS IA+HGLLLW S+G
Sbjct: 8   ACFVIVSFYAFVIPFTQCTTLKEVNQFNSQRNTNSKVHKVNHQKASDIALHGLLLWGSVG 67

Query: 68  FLTPVGILTIRMSNKVD-SVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFENSFNNNH 126
           FL P+GILTIR SNK +    ++R+  Y H+  QMLSV+LATVGA MS+  FENSF+NNH
Sbjct: 68  FLMPLGILTIRGSNKAEPGSRRSRILFYFHVAFQMLSVLLATVGAAMSLIKFENSFDNNH 127

Query: 127 QRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKAYLI 186
           QRLGLALYGA+ +Q  IGFF+P RG K+RS WY VHW+LGT +SLVGIINI+TGLKAY  
Sbjct: 128 QRLGLALYGAILVQAFIGFFRPHRGKKQRSYWYFVHWILGTIVSLVGIINIFTGLKAY-- 185

Query: 187 KHQEALRFGLY 197
            H+  L+  ++
Sbjct: 186 -HKRTLKSTMF 195

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510788|ref|XP_003524116.1| PREDICTED: uncharacterized protein LOC100791831 [Glycine max]

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 106/184 (57%), Positives = 134/184 (72%), Gaps = 4/184 (2%)

Query: 11  IVPSCYVIFLPFVGCLSNDEFSKSRNHKSIQENLYKMGPQTASHIAVHGLLLWASMGFLT 70
           +V S YV  L F  CL+ +E   S +HKS    +YK+  Q  S IAVHGLLLWAS GFL 
Sbjct: 95  VVTSFYVYVLQFSDCLAYEEEHHSSSHKSTNNKVYKVNQQKTSDIAVHGLLLWASTGFLM 154

Query: 71  PVGILTIRMSNKVD-SVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFENSFNNNHQRL 129
           P+GIL I+ S K +    +++V  YLH+  QMLSV+LATVGA MS++ FENSF+N+HQ+L
Sbjct: 155 PLGILIIKGSIKAEPGSRRSKVLFYLHVGFQMLSVLLATVGAAMSLKKFENSFDNSHQKL 214

Query: 130 GLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKAYLIKHQ 189
           GLALYGA+ +Q  IGFF+P RG K RS WY++HW+LGT +SLVGIINIYTGLKAY   H+
Sbjct: 215 GLALYGAILVQGLIGFFRPHRGKKERSYWYLLHWILGTIVSLVGIINIYTGLKAY---HK 271

Query: 190 EALR 193
             L+
Sbjct: 272 RTLK 275

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524961|ref|XP_003531096.1| PREDICTED: uncharacterized protein LOC100812625 [Glycine max]

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 105/184 (57%), Positives = 132/184 (71%), Gaps = 4/184 (2%)

Query: 11  IVPSCYVIFLPFVGCLSNDEFSKSRNHKSIQENLYKMGPQTASHIAVHGLLLWASMGFLT 70
           +V S Y   L F  C++ +E   S +HKS    +YK+  Q  S IAVHGLLLWAS GFL 
Sbjct: 11  VVASFYASVLLFSHCMAYEEEHHSSSHKSTNNKIYKVNQQKTSDIAVHGLLLWASTGFLM 70

Query: 71  PVGILTIRMSNKVD-SVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFENSFNNNHQRL 129
           P+GIL IR S K +    ++ V  YLH+  QMLSV+LATVGA MS++ FENSF+N+HQ+L
Sbjct: 71  PLGILIIRGSIKAEPGSRRSIVLFYLHVGFQMLSVLLATVGAAMSLKKFENSFDNSHQKL 130

Query: 130 GLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKAYLIKHQ 189
           GLALYGA+ +Q  IGFF+P RG K RS WY++HW+LGT +SLVGIINIYTGLKAY   H+
Sbjct: 131 GLALYGAILVQGLIGFFRPHRGKKERSYWYLLHWILGTIVSLVGIINIYTGLKAY---HK 187

Query: 190 EALR 193
             L+
Sbjct: 188 RTLK 191

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463464|ref|XP_002272948.1| PREDICTED: uncharacterized protein LOC100248593 [Vitis vinifera]

 Score =  196 bits (497), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 88/149 (59%), Positives = 115/149 (77%)

Query: 46  KMGPQTASHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVV 105
           ++ PQ    I +HG+LLWAS GFL P+G++TIRM N+ +   K RV  Y+H  LQ+LSV+
Sbjct: 47  RLSPQMTFDITLHGVLLWASTGFLMPIGVITIRMCNREECGRKVRVIFYVHTTLQVLSVL 106

Query: 106 LATVGAIMSIRNFENSFNNNHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLL 165
           +AT GAIMSI+NFENSFNN HQR+GLALYGA+W+Q  IGF +P R +K RS+WY VHW+L
Sbjct: 107 IATAGAIMSIKNFENSFNNYHQRIGLALYGAIWVQALIGFCRPGRRSKGRSVWYFVHWIL 166

Query: 166 GTAISLVGIINIYTGLKAYLIKHQEALRF 194
           GT +S+VG+INIYTGL+AY  K   ++R 
Sbjct: 167 GTTVSVVGMINIYTGLEAYQKKTSRSIRL 195

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297800240|ref|XP_002868004.1| hypothetical protein ARALYDRAFT_493040 [Arabidopsis lyrata subsp. lyrata] gi|297313840|gb|EFH44263.1| hypothetical protein ARALYDRAFT_493040 [Arabidopsis lyrata subsp. lyrata]

 Score =  195 bits (496), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 99/173 (57%), Positives = 128/173 (73%), Gaps = 7/173 (4%)

Query: 21  PFVGC----LSNDEFSKSR-NHKSIQENLYKMGPQTASHIAVHGLLLWASMGFLTPVGIL 75
           PFV C    ++ D  S S  N+K  QE   K+  Q  + I +HG+LLW SMGFL P+GI+
Sbjct: 23  PFVICSSLEVTIDNHSPSNLNNKGSQEQ-DKLSHQMINSIKLHGILLWVSMGFLMPLGII 81

Query: 76  TIRMSNKVDSV-IKARVFVYLHIILQMLSVVLATVGAIMSIRNFENSFNNNHQRLGLALY 134
            IRM+NK  +  IK +VF YLH+I Q+L+VVLAT+GAI+S+R  ENSF+NNHQRLGLALY
Sbjct: 82  FIRMTNKAHANGIKVKVFFYLHVIFQILAVVLATIGAILSLRTLENSFDNNHQRLGLALY 141

Query: 135 GALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKAYLIK 187
            A+WLQ   G FKP RG+KRR  W+++HW+LGT +S+VGIINIYTG++AY  K
Sbjct: 142 AAMWLQFLTGIFKPSRGSKRRLRWFLLHWILGTIVSIVGIINIYTGIRAYQKK 194

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15236824|ref|NP_193560.1| cytochrome b561/ferric reductase transmembrane family protein [Arabidopsis thaliana] gi|2832700|emb|CAA16798.1| unknown protein [Arabidopsis thaliana] gi|7268619|emb|CAB78828.1| unknown protein [Arabidopsis thaliana] gi|332658617|gb|AEE84017.1| cytochrome b561/ferric reductase transmembrane family protein [Arabidopsis thaliana]

 Score =  195 bits (496), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 96/174 (55%), Positives = 128/174 (73%), Gaps = 9/174 (5%)

Query: 21  PFVGC------LSNDEFSKSRNHKSIQENLYKMGPQTASHIAVHGLLLWASMGFLTPVGI 74
           PFV C      + N   S  +   S++++  K+  Q  + I +HG+LLW SMGFL PVGI
Sbjct: 23  PFVICSSLEVTIDNHSPSNLKTKGSLEQD--KLSHQMINSIKLHGILLWVSMGFLMPVGI 80

Query: 75  LTIRMSNKV-DSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFENSFNNNHQRLGLAL 133
           L IRM+NK  ++ IK +VF YLH+I Q+L+VVLAT+GAI+S+R  ENSF+NNHQRLGLAL
Sbjct: 81  LFIRMANKAHENGIKVKVFFYLHVIFQILAVVLATIGAILSLRTLENSFDNNHQRLGLAL 140

Query: 134 YGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKAYLIK 187
           Y A+WLQ   G FKP RG+KRR  W+++HW+LGT +S+VGI+NIYTG++AY  K
Sbjct: 141 YAAMWLQFLTGVFKPSRGSKRRLRWFLLHWILGTIVSIVGIVNIYTGIQAYQKK 194

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110737878|dbj|BAF00877.1| hypothetical protein [Arabidopsis thaliana]

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 95/171 (55%), Positives = 127/171 (74%), Gaps = 9/171 (5%)

Query: 21  PFVGC------LSNDEFSKSRNHKSIQENLYKMGPQTASHIAVHGLLLWASMGFLTPVGI 74
           PFV C      + N   S  +   S++++  K+  Q  + I +HG+LLW SMGFL PVGI
Sbjct: 23  PFVICSSLEVTIDNHSPSNLKTKGSLEQD--KLSHQMINSIKLHGILLWVSMGFLMPVGI 80

Query: 75  LTIRMSNKV-DSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFENSFNNNHQRLGLAL 133
           L IRM+NK  ++ IK +VF YLH+I Q+L+VVLAT+GAI+S+R  ENSF+NNHQRLGLAL
Sbjct: 81  LFIRMANKAHENGIKVKVFFYLHVIFQILAVVLATIGAILSLRTLENSFDNNHQRLGLAL 140

Query: 134 YGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKAY 184
           Y A+WLQ   G FKP RG+KRR  W+++HW+LGT +S+VGI+NIYTG++AY
Sbjct: 141 YAAMWLQFLTGVFKPSRGSKRRLRWFLLHWILGTIVSIVGIVNIYTGIQAY 191

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446813|ref|XP_002279242.1| PREDICTED: putative ferric-chelate reductase 1 [Vitis vinifera] gi|302143534|emb|CBI22095.3| unnamed protein product [Vitis vinifera]

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 90/152 (59%), Positives = 115/152 (75%)

Query: 42  ENLYKMGPQTASHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQM 101
           +N  K+ PQ      VHG LLWASMGFL PVGIL IRMS   +   + ++ VY+H  LQ+
Sbjct: 37  DNNPKLSPQLTFEATVHGFLLWASMGFLMPVGILIIRMSKTEECRRRLKILVYVHAALQI 96

Query: 102 LSVVLATVGAIMSIRNFENSFNNNHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVV 161
           +SV+L T GAIMSI+NFEN+FNN+HQRLGLALYG +WL   IGFF+P RG   RS+W+  
Sbjct: 97  VSVLLVTAGAIMSIKNFENAFNNHHQRLGLALYGIIWLPALIGFFRPQRGTNGRSVWFFT 156

Query: 162 HWLLGTAISLVGIINIYTGLKAYLIKHQEALR 193
           HW+LGTA+SL+GIINIYTGL+AY  K ++++R
Sbjct: 157 HWILGTALSLLGIINIYTGLEAYHRKTRKSVR 188

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524220|ref|XP_003530729.1| PREDICTED: uncharacterized protein LOC100781965 [Glycine max]

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 93/189 (49%), Positives = 126/189 (66%), Gaps = 1/189 (0%)

Query: 5   RFVAAFIVPSCYVIFLPFVGCLSNDEFSKSRNHKSIQENLYKMGPQTASHIAVHGLLLWA 64
           +F+A   + S   I  P V          S   K+I  N  KM P     I +HG LLWA
Sbjct: 6   KFIAFLFLASFVSIIFPLVRSSQEHHQITSSPSKTIDSNHIKMSPGLQFQITLHGFLLWA 65

Query: 65  SMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFENSFNN 124
           SMGFL PVGIL IR+SN+  +  + R+  Y+H ILQM++V+LAT GAIMSI+NF N FNN
Sbjct: 66  SMGFLMPVGILAIRLSNREKNPKRHRILFYVHSILQMIAVLLATAGAIMSIKNFNNLFNN 125

Query: 125 NHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKAY 184
           +HQRLG+ALYG +WLQV +G F+P RG+K RS+W+  HW+LGTA++ +G++N+Y GL AY
Sbjct: 126 SHQRLGVALYGVIWLQVLLGIFRPQRGSK-RSVWFFAHWILGTAVTFLGVLNVYLGLGAY 184

Query: 185 LIKHQEALR 193
             K  + ++
Sbjct: 185 HQKTSKGIK 193

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
TAIR|locus:2141882	545	AT4G18260 [Arabidopsis thalian	0.794	0.297	0.561	3.3e-47
TAIR|locus:2052846	257	AT2G30890 "AT2G30890" [Arabido	0.696	0.552	0.517	1.3e-38
TAIR|locus:2123271	394	AT4G12980 "AT4G12980" [Arabido	0.637	0.329	0.288	2e-11
TAIR|locus:2049254	404	AT2G04850 [Arabidopsis thalian	0.602	0.304	0.304	2.2e-11
TAIR|locus:2090240	393	AT3G25290 "AT3G25290" [Arabido	0.651	0.338	0.285	3.3e-11
TAIR|locus:2130789	402	AT4G17280 [Arabidopsis thalian	0.602	0.305	0.257	3.4e-10
ASPGD|ASPL0000058057	204	AN0852 [Emericella nidulans (t	0.578	0.578	0.323	9.3e-09
TAIR|locus:2168948	395	AT5G47530 [Arabidopsis thalian	0.602	0.311	0.25	6.2e-08
TAIR|locus:505006660	404	AT5G35735 "AT5G35735" [Arabido	0.583	0.294	0.301	3.6e-07
TAIR|locus:2160220	907	AT5G54830 "AT5G54830" [Arabido	0.607	0.136	0.259	1.7e-05

TAIR|locus:2141882 AT4G18260 [Arabidopsis thaliana (taxid:3702)]

 Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
 Identities = 96/171 (56%), Positives = 127/171 (74%)

Query:    21 PFVGCLS------NDEFSKSRNHKSIQENLYKMGPQTASHIAVHGLLLWASMGFLTPVGI 74
             PFV C S      N   S  +   S++++  K+  Q  + I +HG+LLW SMGFL PVGI
Sbjct:    23 PFVICSSLEVTIDNHSPSNLKTKGSLEQD--KLSHQMINSIKLHGILLWVSMGFLMPVGI 80

Query:    75 LTIRMSNKV-DSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFENSFNNNHQRLGLAL 133
             L IRM+NK  ++ IK +VF YLH+I Q+L+VVLAT+GAI+S+R  ENSF+NNHQRLGLAL
Sbjct:    81 LFIRMANKAHENGIKVKVFFYLHVIFQILAVVLATIGAILSLRTLENSFDNNHQRLGLAL 140

Query:   134 YGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKAY 184
             Y A+WLQ   G FKP RG+KRR  W+++HW+LGT +S+VGI+NIYTG++AY
Sbjct:   141 YAAMWLQFLTGVFKPSRGSKRRLRWFLLHWILGTIVSIVGIVNIYTGIQAY 191

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2052846 AT2G30890 "AT2G30890" [Arabidopsis thaliana (taxid:3702)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 74/143 (51%), Positives = 103/143 (72%)

Query:    46 KMGPQTASHIAVHGLLLWASMGFLTPVGILTIR-MSNKVDSVIKARVFVYLHIILQMLSV 104
             K+ P+    I VHG +LWA+MG L P+GI++IR MS K   +I  R   +LH+  QM++V
Sbjct:    44 KLNPKLVYEIKVHGFMLWAAMGVLMPIGIISIRLMSIKDQPIITLRRLFFLHVTSQMVAV 103

Query:   105 VLATVGAIMSIRNFENSFNNNHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWL 164
             +L T+GA+MS+ NF NSF+N+HQ+LG+ LY  +W Q  +GF +PPR  K R  W+V HW+
Sbjct:   104 ILVTIGAVMSVINFNNSFSNHHQQLGIGLYVIVWFQALLGFLRPPREEKARRKWFVGHWI 163

Query:   165 LGTAISLVGIINIYTGLKAYLIK 187
             LGT+I+++GIINIYTGL AY  K
Sbjct:   164 LGTSIAILGIINIYTGLHAYAKK 186

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2123271 AT4G12980 "AT4G12980" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 2.0e-11, P = 2.0e-11
 Identities = 39/135 (28%), Positives = 66/135 (48%)

Query:    57 VHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIR 116
             +HG+L   S G L P+G +  R     +S   A  + YLH+  Q  + V+   G    ++
Sbjct:   220 IHGILNAVSWGLLFPIGAMIARYMRIFESADPA--WFYLHVSCQFSAYVIGVAGWATGLK 277

Query:   117 NFENSFN---NNHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTAISLVG 173
                 S     N H+ +G+ L+    LQ+     +P + +K R +W + H  +G +I ++G
Sbjct:   278 LGSESKGIQYNTHRNIGICLFSIATLQMFAMLLRPRKDHKFRFVWNIYHHGVGYSILILG 337

Query:   174 IINIYTGLKAYLIKH 188
             IIN++ GL     KH
Sbjct:   338 IINVFKGLSILNPKH 352

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2049254 AT2G04850 [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 39/128 (30%), Positives = 64/128 (50%)

Query:    58 HGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRN 117
             HG++   S GFL P G +T R   ++ S+     + Y+H  +Q+   +L T+G  + I  
Sbjct:   219 HGVVNAISWGFLLPAGAVTARYLRQMQSI--GPTWFYIHAAIQLTGFLLGTIGFSIGIVL 276

Query:   118 FENSFNNN---HQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTAISLVGI 174
               NS       H+ LG+A + A  LQ     F+P   NK R  W   H  +G A  ++G+
Sbjct:   277 GHNSPGVTYGLHRSLGIATFTAAALQTLALLFRPKTTNKFRRYWKSYHHFVGYACVVMGV 336

Query:   175 INIYTGLK 182
             +N++ G +
Sbjct:   337 VNVFQGFE 344

GO:0005576 "extracellular region" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2090240 AT3G25290 "AT3G25290" [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 3.3e-11, P = 3.3e-11
 Identities = 40/140 (28%), Positives = 69/140 (49%)

Query:    57 VHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIR 116
             +HG+L   S G L P+G +  R     DS   A  + YLH+  Q  + V+   G    ++
Sbjct:   219 IHGILNAVSWGILFPIGAIIARYMRVFDSADPA--WFYLHVSCQFSAYVIGVAGWATGLK 276

Query:   117 --NFENSFN-NNHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTAISLVG 173
               N       + H+ +G+AL+    +Q+     +P + +K R  W + H  +G AI  +G
Sbjct:   277 LGNESEGIRFSAHRNIGIALFTLATIQMFAMLLRPKKDHKYRFYWNIYHHGVGYAILTLG 336

Query:   174 IINIYTGLKAYLIKHQEALR 193
             IIN++ GL   ++K Q+  +
Sbjct:   337 IINVFKGLN--ILKPQDTYK 354

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2130789 AT4G17280 [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 3.4e-10, P = 3.4e-10
 Identities = 33/128 (25%), Positives = 63/128 (49%)

Query:    57 VHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIR 116
             +HG+L   S G + P+G +  R      S   A  + Y+H+  Q  + ++   G    ++
Sbjct:   218 IHGILNGVSWGIMMPLGAIIARYLRVAKSADPA--WFYIHVFCQASAYIIGVAGWATGLK 275

Query:   117 NFENSFN---NNHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTAISLVG 173
                +S     + H+ +G+AL+    +QV   F +P   +K R  W + H  +G  I ++G
Sbjct:   276 LGGDSPGIQYSTHRAIGIALFSLATVQVFAMFLRPKPEHKHRLYWNIYHHTIGYTIIILG 335

Query:   174 IINIYTGL 181
             ++N++ GL
Sbjct:   336 VVNVFKGL 343

GO:0005576 "extracellular region" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

ASPGD|ASPL0000058057 AN0852 [Emericella nidulans (taxid:162425)]

 Score = 139 (54.0 bits), Expect = 9.3e-09, P = 9.3e-09
 Identities = 42/130 (32%), Positives = 63/130 (48%)

Query:    58 HGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRN 117
             HG+ +  + G + P+G + +R       V++ +  VY HI  Q+L+ VL   G    IR 
Sbjct:    35 HGVAMGIAFGIIFPLGAILLR-------VLQLKYGVYAHIGCQLLAYVLMIAGLATGIRV 87

Query:   118 ---FENSFNNNHQRLGLALYGALWLQVSIGFFKPPRGNK--RRSMWYVVHWLLGTAISLV 172
                 +   NN+H  LG  +   L +Q  IGF+   +  K  +   W  VH  +G    L+
Sbjct:    88 GKILDRLHNNSHTILGTVIVVFLLIQPFIGFWHHHQYKKTQKAGRWTHVHIWIGRIFLLL 147

Query:   173 GIINIYTGLK 182
             GIIN  TGLK
Sbjct:   148 GIINGGTGLK 157

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2168948 AT5G47530 [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 6.2e-08, P = 6.2e-08
 Identities = 32/128 (25%), Positives = 61/128 (47%)

Query:    57 VHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIR 116
             +HG+L   S G + P+G +  R      S   A  + YLH+  Q  + ++   G    ++
Sbjct:   210 IHGILNGVSWGIMMPIGAIIARYLKVSKSADPA--WFYLHVFCQSSAYIIGVAGWATGLK 267

Query:   117 NFENSFNNN---HQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTAISLVG 173
                 S       H+ +G+AL+    +QV   F +P   +K R  W + H  +G ++ ++ 
Sbjct:   268 LGNESAGIQFTFHRAVGIALFCLATIQVFAMFLRPKPEHKYRVYWNIYHHTVGYSVIILA 327

Query:   174 IINIYTGL 181
             ++N++ GL
Sbjct:   328 VVNVFKGL 335

GO:0005886 "plasma membrane" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:505006660 AT5G35735 "AT5G35735" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 3.6e-07, P = 3.6e-07
 Identities = 38/126 (30%), Positives = 58/126 (46%)

Query:    58 HGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRN 117
             HG+L   S G L P+G +  R       V     + YLHI  Q+   V+   G    I+ 
Sbjct:   211 HGVLNAVSWGVLMPMGAMMARYMK----VFADPTWFYLHIAFQVSGYVIGVAGWATGIKL 266

Query:   118 FENSFNNN---HQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTAISLVGI 174
               +S   +   H+ LG+AL+    LQV     +P   +K R+ W V H  +G    ++ I
Sbjct:   267 GNDSPGTSYSTHRNLGIALFTFATLQVFALLVRPKPDHKYRTYWNVYHHTVGYTTIILSI 326

Query:   175 INIYTG 180
             +NI+ G
Sbjct:   327 VNIFKG 332

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009625 "response to insect" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

TAIR|locus:2160220 AT5G54830 "AT5G54830" [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
 Identities = 35/135 (25%), Positives = 68/135 (50%)

Query:    55 IAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMS 114
             + VHG +++ + G L P GIL+ R        IK   +  +H+ LQ   + +  +G + +
Sbjct:   686 LGVHGFMMFLAWGILLPGGILSARYLKH----IKGDGWFKIHMYLQCSGLAIVFLGLLFA 741

Query:   115 IRNFEN-SFNNNHQRLGL-ALYGALWLQVSIGF--FKPPRG---NKRRSMWYVVHWLLGT 167
             +      SF++ H + G  A+  A    V+      KP +G   + +R +W   H ++G 
Sbjct:   742 VAELNGFSFSSTHVKFGFTAIVLACAQPVNAWLRPAKPAQGELISSKRLIWEYSHSIVGQ 801

Query:   168 AISLVGIINIYTGLK 182
             +  +VG++ ++TG+K
Sbjct:   802 SAVVVGVVALFTGMK 816

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	204
cd08760	191	cd08760, Cyt_b561_FRRS1_like, Eukaryotic cytochrom	6e-32
smart00665	129	smart00665, B561, Cytochrome b-561 / ferric reduct	6e-23
cd08554	131	cd08554, Cyt_b561, Eukaryotic cytochrome b(561)	2e-05
cd08761	183	cd08761, Cyt_b561_CYB561D2_like, Eukaryotic cytoch	1e-04
pfam03188	137	pfam03188, Cytochrom_B561, Eukaryotic cytochrome b	6e-04

>gnl|CDD|176490 cd08760, Cyt_b561_FRRS1_like, Eukaryotic cytochrome b(561), including the FRRS1 gene product

 Score =  113 bits (286), Expect = 6e-32
 Identities = 48/140 (34%), Positives = 70/140 (50%), Gaps = 8/140 (5%)

Query: 55  IAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMS 114
           I  HG+L+  + G L P+G L  R     D      V+ YLH  LQ+L+V+LA  G ++ 
Sbjct: 36  IKAHGVLMAIAWGILMPIGALLARYFLLGD-----PVWFYLHAGLQLLAVLLAIAGFVLG 90

Query: 115 IR---NFENSFNNNHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTAISL 171
           I        S NN H  LG+ +     LQ  +G  +P  G+K+RS+W   H  LG A  +
Sbjct: 91  IVLVQGGGGSLNNAHAILGIIVLALAILQPLLGLLRPHPGSKKRSIWNWAHRWLGRAALI 150

Query: 172 VGIINIYTGLKAYLIKHQEA 191
           + I+NI+ GL        +A
Sbjct: 151 LAIVNIFLGLDLAGAGTPKA 170

Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. Length = 191

>gnl|CDD|214769 smart00665, B561, Cytochrome b-561 / ferric reductase transmembrane domain

 Score = 88.8 bits (221), Expect = 6e-23
 Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 10/132 (7%)

Query: 57  VHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIR 116
           +H +L+    GFL    IL  R   +    +    +  LH++LQ+L++VL  +G +    
Sbjct: 1   LHPVLMILGFGFLMGEAILVARPLTRF---LSKPTWFLLHVVLQILALVLGVIGLLAIFI 57

Query: 117 NFENS----FNNNHQRLGLALYGALWLQVSIGFFKPPR---GNKRRSMWYVVHWLLGTAI 169
           +   S    F + H  LGLA +    LQ   GF +P      +K RS     H  +G A 
Sbjct: 58  SHNESGIANFYSLHSWLGLAAFVLAGLQWLSGFLRPLPPGLPSKYRSYLNPYHRFVGLAA 117

Query: 170 SLVGIINIYTGL 181
            ++ I+ I+ GL
Sbjct: 118 FILAIVTIFLGL 129

Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders. Length = 129

>gnl|CDD|176489 cd08554, Cyt_b561, Eukaryotic cytochrome b(561)

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 35/133 (26%), Positives = 46/133 (34%), Gaps = 11/133 (8%)

Query: 56  AVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSI 115
             H LL+     FL    +L  R+   +           LH IL +L+ VL  VG +   
Sbjct: 3   NWHPLLMVIGFVFLMGEALLVYRVFRLLTKRALKL----LHAILHLLAFVLGLVGLLAVF 58

Query: 116 RNFENS----FNNNHQRLGLALYGALWLQVSIG---FFKPPRGNKRRSMWYVVHWLLGTA 168
                       + H  LGLA      LQ   G   F  P      RS     H   G A
Sbjct: 59  LFHNAGGIANLYSLHSWLGLATVLLFLLQFLSGFVLFLLPLLRLSYRSSLLPFHRFFGLA 118

Query: 169 ISLVGIINIYTGL 181
           I ++ I  I  G+
Sbjct: 119 IFVLAIATILLGI 131

Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous. Length = 131

>gnl|CDD|176491 cd08761, Cyt_b561_CYB561D2_like, Eukaryotic cytochrome b(561), including the CYB561D2 gene product

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 10/133 (7%)

Query: 58  HGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRN 117
           H LL+      L    +L ++ ++ +  + +    V LH ILQ+L+++    G +    N
Sbjct: 24  HPLLMSLGFLLLMTEALLLLQPTSSLTKLARKTK-VRLHWILQLLALLCILAGLVAIYYN 82

Query: 118 FENS----FNNNHQRLGLALYGALWLQVSIGF--FKPP---RGNKRRSMWYVVHWLLGTA 168
            E +    F + H  LGL     + LQ   G     PP   RG  +       H L G  
Sbjct: 83  KERNGKPHFTSWHGILGLVTVILIVLQALGGLALLYPPGLRRGESKAKKLKKYHRLSGYV 142

Query: 169 ISLVGIINIYTGL 181
             L+G+  +  GL
Sbjct: 143 AYLLGLATLVLGL 155

Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. Length = 183

>gnl|CDD|217413 pfam03188, Cytochrom_B561, Eukaryotic cytochrome b561

 Score = 38.3 bits (90), Expect = 6e-04
 Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 11/101 (10%)

Query: 95  LHIILQMLSVVLATVGAIMSIRNFENS----FNNNHQRLGLALYGALWLQVSIGFF---- 146
           LH +L +L+++L  VG +   +         F + H  LGL       LQ   GF     
Sbjct: 37  LHWVLHLLALILGVVGLLAVFKFHNELGIPHFYSLHSWLGLTTVILFLLQWLSGFALFLF 96

Query: 147 -KPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKAYLI 186
               R  +   +    H   G  I ++ I+    GL   LI
Sbjct: 97  PGLSRSIRSLLL--PWHVFFGLVIFVLAIVTALLGLLEKLI 135

Cytochrome b561 is a secretory vesicle-specific electron transport protein. It is an integral membrane protein, that binds two heme groups non-covalently. This is a eukaryotic family. Members of the 'prokaryotic cytochrome b561' family can be found in Pfam: PF01292. Length = 137

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	204
cd08760	191	Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561),	99.97
smart00665	129	B561 Cytochrome b-561 / ferric reductase transmemb	99.94
PF03188	137	Cytochrom_B561: Eukaryotic cytochrome b561; InterP	99.93
cd08554	131	Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome	99.9
cd08761	183	Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561	99.88
cd08766	144	Cyt_b561_ACYB-1_like Plant cytochrome b(561), incl	99.87
cd08765	153	Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBR	99.82
cd08762	179	Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYB	99.82
cd08763	143	Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB5	99.82
PLN02351	242	cytochromes b561 family protein	99.81
PLN02810	231	carbon-monoxide oxygenase	99.79
PLN02680	232	carbon-monoxide oxygenase	99.79
cd08764	214	Cyt_b561_CG1275_like Non-vertebrate eumetazoan cyt	99.78
KOG4293	403	consensus Predicted membrane protein, contains DoH	99.75
KOG1619	245	consensus Cytochrome b [Energy production and conv	99.69
PF10348	105	DUF2427: Domain of unknown function (DUF2427); Int	99.44
PF13301	175	DUF4079: Protein of unknown function (DUF4079)	97.36
cd08554	131	Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome	96.51
PF03188	137	Cytochrom_B561: Eukaryotic cytochrome b561; InterP	95.72
smart00665	129	B561 Cytochrome b-561 / ferric reductase transmemb	95.68
cd08761	183	Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561	95.52
cd08760	191	Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561),	95.44
cd08763	143	Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB5	94.73
cd08764	214	Cyt_b561_CG1275_like Non-vertebrate eumetazoan cyt	93.83
PF00033	188	Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; I	93.82
PLN02810	231	carbon-monoxide oxygenase	93.42
PF00033	188	Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; I	93.27
PLN02680	232	carbon-monoxide oxygenase	93.13
PF10348	105	DUF2427: Domain of unknown function (DUF2427); Int	93.09
cd08762	179	Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYB	92.05
cd08766	144	Cyt_b561_ACYB-1_like Plant cytochrome b(561), incl	91.95
COG3038	181	CybB Cytochrome B561 [Energy production and conver	91.38
cd08765	153	Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBR	91.29
PF13172	34	PepSY_TM_1: PepSY-associated TM helix	90.17
PLN02351	242	cytochromes b561 family protein	89.2
PF13301	175	DUF4079: Protein of unknown function (DUF4079)	88.65
PRK11513	176	cytochrome b561; Provisional	88.25
KOG1619	245	consensus Cytochrome b [Energy production and conv	86.88
TIGR02125	211	CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochro	86.67
PF01292	182	Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPr	84.87
PF13706	37	PepSY_TM_3: PepSY-associated TM helix	84.84
PF13703	88	PepSY_TM_2: PepSY-associated TM helix	81.36

>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product

Probab=99.97  E-value=4.8e-31  Score=218.79  Aligned_cols=147  Identities=32%  Similarity=0.496  Sum_probs=131.3

Q ss_pred             ccCccchhHHHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheec---ccCCC
Q 028753           46 KMGPQTASHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRN---FENSF  122 (204)
Q Consensus        46 ~~~~~~~~~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~---~~~~f  122 (204)
                      ...++.+..+++||++|.+||++++|+|++++|+++..     .+.||++|+.+|+++++++++|+++++..   .++++
T Consensus        27 ~~~~~~~~~~~~Hg~lm~iaw~~l~p~gil~ar~~~~~-----~~~~~~~H~~~q~~~~~~~i~g~~~~~~~~~~~~~~~  101 (191)
T cd08760          27 SSVGSSDTLIKAHGVLMAIAWGILMPIGALLARYFLLG-----DPVWFYLHAGLQLLAVLLAIAGFVLGIVLVQGGGGSL  101 (191)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----CchhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence            44556678999999999999999999999999997432     25799999999999999999999999987   34679


Q ss_pred             CChhhHHHHHHHHHHHHHHHHHhccCCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHhhhhcCCC--ccceEEEeEE
Q 028753          123 NNNHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKAYLIK--HQEALRFGLY  197 (204)
Q Consensus       123 ~~~H~~iGl~v~~l~~lQ~l~G~lrp~~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~~~~~--~~~~i~~~v~  197 (204)
                      ++.|+++|+++++++++|+++|++||.+..+.|+.|++.|+++|++++++|++|+.+|+.+..++  +.+.+.|++|
T Consensus       102 ~~~H~~lGl~~~~l~~lQ~~~G~~~~~~~~~~R~~~~~~H~~~G~~~~~l~~v~i~~G~~~~~~~~~~~~~~~~~~~  178 (191)
T cd08760         102 NNAHAILGIIVLALAILQPLLGLLRPHPGSKKRSIWNWAHRWLGRAALILAIVNIFLGLDLAGAGTPKAWKIAYGVV  178 (191)
T ss_pred             cCcchhhhHHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHH
Confidence            99999999999999999999999999988889999999999999999999999999999999988  5666555544

Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain

Probab=99.94  E-value=5.3e-27  Score=183.62  Aligned_cols=121  Identities=31%  Similarity=0.491  Sum_probs=109.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhh-ccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheeccc----CCCCChhhHHHH
Q 028753           57 VHGLLLWASMGFLTPVGILTIRM-SNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFE----NSFNNNHQRLGL  131 (204)
Q Consensus        57 ~HG~LM~vAw~iL~P~Gil~aR~-~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~~----~~f~~~H~~iGl  131 (204)
                      +||++|.+||++++|.|++.+|+ .+..    ..+.|+++|+.+|.++.+++++|+++++.+.+    ++++++|+++|+
T Consensus         1 ~H~~lm~~~f~~l~p~gil~~r~~~~~~----~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~~~~~~~s~H~~lGl   76 (129)
T smart00665        1 LHPVLMILGFGFLMGEAILVARPLTRFL----SKPTWFLLHVVLQILALVLGVIGLLAIFISHNESGIANFYSLHSWLGL   76 (129)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhhhHhhcc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCccchhHHHHH
Confidence            69999999999999999999997 3322    12589999999999999999999999988754    479999999999


Q ss_pred             HHHHHHHHHHHHHhccCCCC---CCCcchhHhHHHHHHHHHHHHHHHHHHHhh
Q 028753          132 ALYGALWLQVSIGFFKPPRG---NKRRSMWYVVHWLLGTAISLVGIINIYTGL  181 (204)
Q Consensus       132 ~v~~l~~lQ~l~G~lrp~~~---~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl  181 (204)
                      +++++..+|++.|+++|.++   .+.|+.++++|+++|++++++|++|+++|+
T Consensus        77 ~~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~~~~lG~  129 (129)
T smart00665       77 AAFVLAGLQWLSGFLRPLPPGLPSKYRSYLNPYHRFVGLAAFILAIVTIFLGL  129 (129)
T ss_pred             HHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            99999999999999988765   677999999999999999999999999985

Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.

>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []

Probab=99.93  E-value=4.7e-25  Score=172.97  Aligned_cols=125  Identities=33%  Similarity=0.499  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheeccc----CCCCChhhHHHHH
Q 028753           57 VHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFE----NSFNNNHQRLGLA  132 (204)
Q Consensus        57 ~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~~----~~f~~~H~~iGl~  132 (204)
                      +||++|.+||++++|.|++.+|+.+ ..+ ...+.|+++|+.+|.++++++++|+++++.+.+    +++++.|+++|++
T Consensus         1 ~H~~lm~~~f~~l~~~~il~~r~~~-~~~-~~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~~~~~h~~s~H~~lG~~   78 (137)
T PF03188_consen    1 WHPILMTIGFVFLMPEGILAARYNP-FRR-KSRKWWFRIHWILQVLALVFAIIGFVAIFINKNRNGKPHFKSWHSILGLA   78 (137)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhh-hcc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCchhhhhHH
Confidence            6999999999999999999999743 111 123679999999999999999999999988754    5799999999999


Q ss_pred             HHHHHHHHHHHHhccC---CCCCCCcchhHhHHHHHHHHHHHHHHHHHHHhhhh
Q 028753          133 LYGALWLQVSIGFFKP---PRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKA  183 (204)
Q Consensus       133 v~~l~~lQ~l~G~lrp---~~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~  183 (204)
                      +++++++|++.|++++   ..+++.|+.+++.|+++|++++++|++|+.+|+..
T Consensus        79 ~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~G~~~  132 (137)
T PF03188_consen   79 TFVLALLQPLLGFFRFFMPGLPRKRRPIWNKWHRWLGYLIYVLAIATIFLGLTE  132 (137)
T ss_pred             HHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998754   44556788999999999999999999999999953

It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane

>cd08554 Cyt_b561 Eukaryotic cytochrome b(561)

Probab=99.90  E-value=1.9e-23  Score=163.58  Aligned_cols=123  Identities=29%  Similarity=0.370  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheeccc----CCCCChhhHHH
Q 028753           55 IAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFE----NSFNNNHQRLG  130 (204)
Q Consensus        55 ~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~~----~~f~~~H~~iG  130 (204)
                      +++|+++|.+||++++|.|++.+|+.+...    .+.|+++|+.+|.++.+++++|+++++.+.+    +++++.|+++|
T Consensus         2 f~~H~~lm~~g~~~l~~~~il~~r~~~~~~----~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~~~~~~h~~s~Hs~lG   77 (131)
T cd08554           2 FNWHPLLMVIGFVFLMGEALLVYRVFRLLT----KRALKLLHAILHLLAFVLGLVGLLAVFLFHNAGGIANLYSLHSWLG   77 (131)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHhccccccc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchhHHHHHH
Confidence            468999999999999999999999986542    2579999999999999999999999988752    36999999999


Q ss_pred             HHHHHHHHHHHHHHhcc---CCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHhh
Q 028753          131 LALYGALWLQVSIGFFK---PPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGL  181 (204)
Q Consensus       131 l~v~~l~~lQ~l~G~lr---p~~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl  181 (204)
                      ++++++.++|++.|+.+   |.+..+.|+.+++.|+++|+++++++++|+++|+
T Consensus        78 l~~~~l~~~q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~t~~~G~  131 (131)
T cd08554          78 LATVLLFLLQFLSGFVLFLLPLLRLSYRSSLLPFHRFFGLAIFVLAIATILLGI  131 (131)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999765   4443345889999999999999999999999884

Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.

>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product

Probab=99.88  E-value=1.8e-22  Score=166.74  Aligned_cols=132  Identities=24%  Similarity=0.288  Sum_probs=111.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheeccc----CCCCChh
Q 028753           51 TASHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFE----NSFNNNH  126 (204)
Q Consensus        51 ~~~~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~~----~~f~~~H  126 (204)
                      ...++++||++|.++|++++|.|++..|-.....+ ...+.|+++|+.+|.+++.++++|+.+.+.+.+    ++|++.|
T Consensus        17 ~~~~f~~Hp~~m~i~~~~l~~~~il~~~~~~~~~~-~~~~~~~~~H~~l~~la~~~~~~G~~~~~~~~~~~~~~hf~s~H   95 (183)
T cd08761          17 GTSLFSWHPLLMSLGFLLLMTEALLLLQPTSSLTK-LARKTKVRLHWILQLLALLCILAGLVAIYYNKERNGKPHFTSWH   95 (183)
T ss_pred             ccceeehhHHHHHHHHHHHHHHHHHHhcCCCCcch-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchh
Confidence            34689999999999999999999998664333221 123578999999999999999999998887643    4799999


Q ss_pred             hHHHHHHHHHHHHHHHHHhcc---CCCC--CCCcchhHhHHHHHHHHHHHHHHHHHHHhhhh
Q 028753          127 QRLGLALYGALWLQVSIGFFK---PPRG--NKRRSMWYVVHWLLGTAISLVGIINIYTGLKA  183 (204)
Q Consensus       127 ~~iGl~v~~l~~lQ~l~G~lr---p~~~--~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~  183 (204)
                      +++|+++++++++|++.|+.+   |...  .++|+.++++|+++|++++++|++|+.+|++.
T Consensus        96 ~~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~  157 (183)
T cd08761          96 GILGLVTVILIVLQALGGLALLYPPGLRRGESKAKKLKKYHRLSGYVAYLLGLATLVLGLET  157 (183)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            999999999999999999853   3222  25788899999999999999999999999987

Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1

Probab=99.87  E-value=1.2e-21  Score=157.28  Aligned_cols=127  Identities=25%  Similarity=0.337  Sum_probs=112.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheeccc----CCCCChhh
Q 028753           52 ASHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFE----NSFNNNHQ  127 (204)
Q Consensus        52 ~~~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~~----~~f~~~H~  127 (204)
                      ..++++|+.+|.+++.++++.|++..|..+..+     +.+..+|+.+|.+|.+++++|++..+.+.+    +++++.|+
T Consensus         5 ~~~Fn~HP~lM~~gfi~l~~eAiL~~r~~~~~k-----~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~~~~~~~SlHS   79 (144)
T cd08766           5 GLIFNVHPVLMVIGFIFLAGEAILAYKTVPGSR-----EVQKAVHLTLHLVALVLGIVGIYAAFKFHNEVGIPNLYSLHS   79 (144)
T ss_pred             cceeeccHHHHHHHHHHHHHHHHHHhhcccccc-----chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccHHH
Confidence            368899999999999999999999999765321     457889999999999999999999988754    36999999


Q ss_pred             HHHHHHHHHHHHHHHHHh---ccCCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHhhhh
Q 028753          128 RLGLALYGALWLQVSIGF---FKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKA  183 (204)
Q Consensus       128 ~iGl~v~~l~~lQ~l~G~---lrp~~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~  183 (204)
                      ++|++++++..+|.+.|+   +.|....+.|+...++|+.+|+++++++++++.+|+..
T Consensus        80 wlGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~~~la~~t~~lGl~e  138 (144)
T cd08766          80 WLGIGTISLFGLQWLFGFVTFWFPGASRNTRAALLPWHVFLGLAIYYLAIATAETGLLE  138 (144)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999995   57876666788889999999999999999999999975

Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product

Probab=99.82  E-value=1e-19  Score=147.40  Aligned_cols=129  Identities=19%  Similarity=0.235  Sum_probs=112.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheeccc----CCCCChhhH
Q 028753           53 SHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFE----NSFNNNHQR  128 (204)
Q Consensus        53 ~~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~~----~~f~~~H~~  128 (204)
                      ..+++|+.+|.+++.+++..+|++.|..+..+..  .+.+..+|+.+|.++.+++++|+...+.+.+    .++++.|++
T Consensus        10 ~~Fn~HPlLm~~Gfi~l~geAiL~yr~~~~~~~~--k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~~~~~fySlHSw   87 (153)
T cd08765          10 AEFNWHPVLMVIGFIFIQGIAIIVYRLPWTWKCS--KLLMKLIHAGLHILAFILAIISVVAVFVFHNAKNIPNMYSLHSW   87 (153)
T ss_pred             CeeechHHHHHHHHHHHHHHHHHHhccccccccc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHH
Confidence            3789999999999999999999999965443221  1456889999999999999999998888643    379999999


Q ss_pred             HHHHHHHHHHHHHHHHh---ccCCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHhhhh
Q 028753          129 LGLALYGALWLQVSIGF---FKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKA  183 (204)
Q Consensus       129 iGl~v~~l~~lQ~l~G~---lrp~~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~  183 (204)
                      +|++++++..+|.+.|+   +.|......|+...++|+.+|+.+++++++++.+|+..
T Consensus        88 lGl~t~~l~~lQ~~~Gf~~f~~P~~~~~~r~~~~p~H~~~G~~i~~Lai~t~~lG~~e  145 (153)
T cd08765          88 VGLAAVILYPLQLVLGISVYLLPVAPVRLRAALMPLHVYSGLFIFGTVIATALMGITE  145 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999995   47776556788889999999999999999999999975

Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me

>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product

Probab=99.82  E-value=1.3e-19  Score=149.88  Aligned_cols=128  Identities=19%  Similarity=0.249  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheeccc----CCCCChhhHH
Q 028753           54 HIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFE----NSFNNNHQRL  129 (204)
Q Consensus        54 ~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~~----~~f~~~H~~i  129 (204)
                      .+++|+++|.+++.+++..|++..|..++....  .+.|+.+|..+|.+|.+++++|+...++..+    +++++.|+++
T Consensus        34 ~Fn~HP~lMv~Gfi~L~geAiL~Yr~~~~~~~~--k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~~~~nlySlHSWl  111 (179)
T cd08762          34 NFNWHPVLMVTGMVVLYGNAALVYRIPLTWGGP--KLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVHHTANLYSLHSWV  111 (179)
T ss_pred             ceeehHHHHHHHHHHHHHHHHHhhccccccccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHH
Confidence            689999999999999999999999976653211  1457899999999999999999999998765    3689999999


Q ss_pred             HHHHHHHHHHHHHHHh---ccCCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHhhhh
Q 028753          130 GLALYGALWLQVSIGF---FKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKA  183 (204)
Q Consensus       130 Gl~v~~l~~lQ~l~G~---lrp~~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~  183 (204)
                      |++++++..+|.+.|+   +.|..+.+.|....++|+.+|+.+++++++++.+|+..
T Consensus       112 Gl~t~~Lf~lQ~~~Gf~~f~~p~~~~~~ra~~~p~H~~~G~~if~Laiat~~lGl~e  168 (179)
T cd08762         112 GICTVALFTCQWVMGFTSFLLPWAPMWLRALVKPIHVFFGAMILVLSIASCISGINE  168 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999996   45655556788889999999999999999999999976

Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product

Probab=99.82  E-value=2.3e-19  Score=143.96  Aligned_cols=127  Identities=24%  Similarity=0.334  Sum_probs=112.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheeccc----CCCCChhhH
Q 028753           53 SHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFE----NSFNNNHQR  128 (204)
Q Consensus        53 ~~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~~----~~f~~~H~~  128 (204)
                      .++++|+++|.+++.+++..|+++.|..+....    +....+|+.+|.++.+++++|+...+.+.+    +++++.|++
T Consensus         5 ~~Fn~HP~lm~~G~i~l~geaiL~~~~~~~~~k----~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~~~~hf~SlHsw   80 (143)
T cd08763           5 LQFNVHPLCMVLGLVFLCGEALLVYRVFRNETK----RSTKILHGLLHIMALVISLVGLVAVFDYHQANGYPDMYSLHSW   80 (143)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhcccccccc----chhHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHH
Confidence            389999999999999999999999997654321    345779999999999999999998887643    379999999


Q ss_pred             HHHHHHHHHHHHHHHHh---ccCCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHhhhh
Q 028753          129 LGLALYGALWLQVSIGF---FKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKA  183 (204)
Q Consensus       129 iGl~v~~l~~lQ~l~G~---lrp~~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~  183 (204)
                      +|++++++..+|.+.|+   +.|....+.|..++++|+.+|+.+++++++++.+|+..
T Consensus        81 lGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~f~la~~t~~lG~~e  138 (143)
T cd08763          81 CGILTFVLYFLQWLIGFSFFLFPGASFTLRSQYKPLHEFFGRALFLSSVGTSLLGLTE  138 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999995   57876677789999999999999999999999999965

Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>PLN02351 cytochromes b561 family protein

Probab=99.81  E-value=2.8e-19  Score=153.71  Aligned_cols=125  Identities=20%  Similarity=0.205  Sum_probs=108.7

Q ss_pred             HH-HHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheeccc---CCCCChhhHH
Q 028753           54 HI-AVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFE---NSFNNNHQRL  129 (204)
Q Consensus        54 ~~-~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~~---~~f~~~H~~i  129 (204)
                      .+ ++|+.+|.+++.++++.||+++|..|..+     +.|+.+|..+|.+|++++++|+...+.+.+   +++++.|+++
T Consensus        49 iffn~HP~lMviGfi~L~geAILvYR~~~~~~-----k~~K~lH~~Lh~~Ali~~vvGl~a~fh~~~~~i~nlySLHSWl  123 (242)
T PLN02351         49 VYAVLHPLLMVIGFILISGEAILVHRWLPGSR-----KTKKSVHLWLQGLALASGVFGIWTKFHGQDGIVANFYSLHSWM  123 (242)
T ss_pred             eeecccHHHHHHHHHHHHHHHHHHhhcccccc-----hHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHH
Confidence            44 69999999999999999999999886421     358999999999999999999998433322   4689999999


Q ss_pred             HHHHHHHHHHHHHHHh---ccCCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHhhhh
Q 028753          130 GLALYGALWLQVSIGF---FKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKA  183 (204)
Q Consensus       130 Gl~v~~l~~lQ~l~G~---lrp~~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~  183 (204)
                      |++++++..+|.+.|+   +.|......|....++|..+|+.+++++++++.+|+..
T Consensus       124 Gl~tv~Lf~lQwv~Gf~~F~~P~~~~~~Ra~~~P~Hv~~Gl~if~LaiaTa~lGl~E  180 (242)
T PLN02351        124 GLICVSLFGAQWLTGFMSFWHRGEMRTTRTTVLPWHVFLGLYTYGLAVATAETGLLE  180 (242)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999996   46666566788889999999999999999999999987

>PLN02810 carbon-monoxide oxygenase

Probab=99.79  E-value=9.5e-19  Score=149.41  Aligned_cols=125  Identities=19%  Similarity=0.303  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheeccc----CCCCChhhHH
Q 028753           54 HIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFE----NSFNNNHQRL  129 (204)
Q Consensus        54 ~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~~----~~f~~~H~~i  129 (204)
                      .+++|+++|.+++.+++..||+..|..+..+     +.++.+|+.+|.+|.+++++|....+...|    +++++.|+|+
T Consensus        46 ~FN~HPvlMv~Gfi~l~geAIL~Yr~~~~~k-----~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~~i~nlySLHSWl  120 (231)
T PLN02810         46 IFNLHPVLMLIGLIIIGGEAIMSYKSLPLKK-----EVKKLIHLVLHAIALILGIFGICAAFKNHNESGIANLYSLHSWL  120 (231)
T ss_pred             eeeehHHHHHHHHHHHhhHHHHHhhcccccc-----chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeHHHHH
Confidence            6889999999999999999999999876432     346789999999999999999999998765    3699999999


Q ss_pred             HHHHHHHHHHHHHHHh---ccCCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHhhhh
Q 028753          130 GLALYGALWLQVSIGF---FKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKA  183 (204)
Q Consensus       130 Gl~v~~l~~lQ~l~G~---lrp~~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~  183 (204)
                      |++++.+..+|.+.|+   +.|......|....++|..+|..+++++++++.+|+..
T Consensus       121 Gl~tv~Lf~lQw~~Gf~~Fl~P~~~~~~R~~~lP~Hv~~Gl~if~LAiata~lGi~E  177 (231)
T PLN02810        121 GIGIISLYGIQWIYGFIVFFFPGGSTNLRSGSLPWHVLFGLFVYILAVGNAALGFLE  177 (231)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999997   67887777888889999999999999999999999976

>PLN02680 carbon-monoxide oxygenase

Probab=99.79  E-value=8.9e-19  Score=150.13  Aligned_cols=126  Identities=22%  Similarity=0.327  Sum_probs=110.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheeccc----CCCCChhhH
Q 028753           53 SHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFE----NSFNNNHQR  128 (204)
Q Consensus        53 ~~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~~----~~f~~~H~~  128 (204)
                      .++++|+++|.+++.+++..+++..|..+..+     +.+..+|+.+|.++.+++++|+...++..+    .++++.|++
T Consensus        45 ~~Fn~HPlLM~~Gfi~l~geAIL~yr~~~~~k-----~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~~~~nfySlHSW  119 (232)
T PLN02680         45 LIFNVHPVLMVIGLVLLNGEAMLAYKTVPGTK-----NLKKLVHLTLQFLAFCLSLIGVWAALKFHNEKGIDNFYSLHSW  119 (232)
T ss_pred             ceEechHHHHHHHHHHHHHHHHhccccccccc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccccHHHH
Confidence            57889999999999999999999988765422     356789999999999999999999888754    379999999


Q ss_pred             HHHHHHHHHHHHHHHHh---ccCCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHhhhh
Q 028753          129 LGLALYGALWLQVSIGF---FKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKA  183 (204)
Q Consensus       129 iGl~v~~l~~lQ~l~G~---lrp~~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~  183 (204)
                      +|++++++..+|.+.|+   +.|....+.|+...++|+.+|+.+++++++++.+|+..
T Consensus       120 lGl~t~iL~~lQ~~~Gf~~f~~P~~~~~~R~~~~p~H~~~G~~if~LaiaT~~lG~~E  177 (232)
T PLN02680        120 LGLACLFLFSLQWAAGFVTFWYPGGSRNSRASLLPWHVFFGIYIYALAVATATTGILE  177 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999995   57776556677778999999999999999999999976

>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561)

Probab=99.78  E-value=1.3e-18  Score=147.75  Aligned_cols=127  Identities=23%  Similarity=0.321  Sum_probs=110.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheeccc------CCCCChh
Q 028753           53 SHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFE------NSFNNNH  126 (204)
Q Consensus        53 ~~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~~------~~f~~~H  126 (204)
                      ..+++|+++|.+++.+++..|+++.|..+..+ +   +.++.+|..+|.+|.+++++|+...+...|      +++++.|
T Consensus        22 ~~Fn~HP~lM~~Gfi~l~geAiLvyr~~~~~~-k---~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlH   97 (214)
T cd08764          22 LQFNWHPLLMVLGLIFLYGNSILVYRVFRNTR-K---KRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLH   97 (214)
T ss_pred             ceEeecHHHHHHHHHHHHHHHHHHhccCcccc-c---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchH
Confidence            46899999999999999999999999887532 1   346789999999999999999988766432      3789999


Q ss_pred             hHHHHHHHHHHHHHHHHHh---ccCCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHhhhh
Q 028753          127 QRLGLALYGALWLQVSIGF---FKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKA  183 (204)
Q Consensus       127 ~~iGl~v~~l~~lQ~l~G~---lrp~~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~  183 (204)
                      +++|++++++..+|.+.|+   +.|......|+...++|+.+|+.+++++++++.+|+..
T Consensus        98 SwlGl~t~~L~~lQ~~~Gf~~fl~P~~~~~~r~~~~p~H~~~Gl~~fvLaiaT~~lGl~e  157 (214)
T cd08764          98 SWLGLTAVILFSLQWVGGFVSFLFPGLPETLRAAYLPLHVFFGLFIFVLAVATALLGITE  157 (214)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999996   57765555677778899999999999999999999977

Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>KOG4293 consensus Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains [Signal transduction mechanisms]

Probab=99.75  E-value=5.5e-20  Score=169.04  Aligned_cols=142  Identities=25%  Similarity=0.402  Sum_probs=127.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheecccC---CCCChhhHH
Q 028753           53 SHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFEN---SFNNNHQRL  129 (204)
Q Consensus        53 ~~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~~~---~f~~~H~~i  129 (204)
                      .....||+++..+|++++|+|++.+||+|..+.  +.+.|||.|+.+|..++++.+.|++.+.+..++   .-...|..+
T Consensus       210 ~~~~~hgil~~~sw~il~p~g~i~ary~~~~~~--~~~~Wfy~H~~~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~h~~~  287 (403)
T KOG4293|consen  210 KLRMTHGILNALSWGILFPAGAIIARYLRQKPS--GDPTWFYIHRACQFTGFILGVAGFVDGLKLSNESDGTVYSAHTDL  287 (403)
T ss_pred             hccccHHHHhhhhhheeccccceeEEEecccCC--CCcchhhhhhhheeeEEEEEeeeeeeeEEEccCCCceeeeecccc
Confidence            334449999999999999999999999998744  457899999999999988889999998888654   357899999


Q ss_pred             HHHHHHHHHHHHHHHhccCCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHhhhhcCCCccce-EEEeE
Q 028753          130 GLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKAYLIKHQEA-LRFGL  196 (204)
Q Consensus       130 Gl~v~~l~~lQ~l~G~lrp~~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~~~~~~~~~-i~~~v  196 (204)
                      |+.+.++..+|++..++||.+.++.|+.||++|+..|+...++|++|++.|+.+++....|. +.|+.
T Consensus       288 G~~~~~l~~lQ~~~~l~Rp~~~~k~R~~~nwyH~~~g~~~~~~~~~~i~~~~~l~~~~~~w~~~~~~~  355 (403)
T KOG4293|consen  288 GIILLVLAFLQPLALLLRPLPESKIRRYWNWYHHLVGRLSIILGIVNIFDGLELLYPGQSWIKLGYGS  355 (403)
T ss_pred             hhHHHHHHHHHHHHHHhcCCcccCceeccceeeeecCcceeeehhhHHhhhHhhhcCCCceEEeeeee
Confidence            99999999999999999999999999999999999999999999999999999998888776 55553

>KOG1619 consensus Cytochrome b [Energy production and conversion]

Probab=99.69  E-value=6.7e-17  Score=138.30  Aligned_cols=130  Identities=27%  Similarity=0.367  Sum_probs=114.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheeccc----CCCCChhh
Q 028753           52 ASHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFE----NSFNNNHQ  127 (204)
Q Consensus        52 ~~~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~~----~~f~~~H~  127 (204)
                      ...+++|+++|.++|.++.-.++++.|.+|..+.    +.-+-+|..+|+.|..++++|+...+...+    .+|++.|+
T Consensus        52 ~~~fnlHP~lMviGfI~l~GeAiL~YR~~r~~~k----~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~i~NfySLHS  127 (245)
T KOG1619|consen   52 NKEFNLHPVLMVIGFIYLQGEAILIYRVFRYTSK----KVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVGIANFYSLHS  127 (245)
T ss_pred             chhcCcchHHHHHHHHHhccceeeeeehhhhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccceeeHHH
Confidence            3567799999999999999999999999775432    344678999999999999999998888754    36999999


Q ss_pred             HHHHHHHHHHHHHHHHHh---ccCCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHhhhhcC
Q 028753          128 RLGLALYGALWLQVSIGF---FKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKAYL  185 (204)
Q Consensus       128 ~iGl~v~~l~~lQ~l~G~---lrp~~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~~~  185 (204)
                      |+|+.++++..+|.+.|+   +.|.-+.+.|....++|+.+|..+++++++|+.+|+....
T Consensus       128 WlGl~~v~ly~~Q~v~GF~tfl~pg~~~~~Rs~lmP~H~~~Gl~~f~lai~ta~~Gl~ek~  188 (245)
T KOG1619|consen  128 WLGLCVVILYSLQWVFGFFTFLFPGSPESYRSRLMPWHVFLGLAIFILAIVTALTGLLEKL  188 (245)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCccHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999996   5777777899999999999999999999999999995543

>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi

Probab=99.44  E-value=8e-13  Score=101.03  Aligned_cols=86  Identities=22%  Similarity=0.350  Sum_probs=75.8

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheecccCC----CCCh
Q 028753           50 QTASHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFENS----FNNN  125 (204)
Q Consensus        50 ~~~~~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~~~~----f~~~  125 (204)
                      +.+..+++|+++|.+||.++.|+|+++.+...+         |   |...|.++.+++++|+.++....++.    ++|.
T Consensus        13 ~~~~~l~~Hi~lm~la~~il~Pi~lvL~~~~sr---------~---~~~~q~~~~~l~~~g~~~g~~~~~~~p~lyp~n~   80 (105)
T PF10348_consen   13 PHRSALYAHIVLMTLAWVILYPIGLVLGNARSR---------W---HLPVQTVFLVLMILGLFLGSVYNGSTPDLYPNNA   80 (105)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHccch---------H---HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCH
Confidence            357899999999999999999999998766532         2   99999999999999999998875432    5899


Q ss_pred             hhHHHHHHHHHHHHHHHHHhcc
Q 028753          126 HQRLGLALYGALWLQVSIGFFK  147 (204)
Q Consensus       126 H~~iGl~v~~l~~lQ~l~G~lr  147 (204)
                      |.++|++++.++.+|++.|+++
T Consensus        81 H~k~g~il~~l~~~q~~~gv~~  102 (105)
T PF10348_consen   81 HGKMGWILFVLMIVQVILGVIL  102 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999875

Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.

>PF13301 DUF4079: Protein of unknown function (DUF4079)

Probab=97.36  E-value=0.0058  Score=50.78  Aligned_cols=88  Identities=19%  Similarity=0.201  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHHHHHHh---hheeccc-CCCCChhhHHHHHHHHHHHHHHHHHh-ccCCCCCCCcchhHhHHHHHHHH
Q 028753           94 YLHIILQMLSVVLATVGAI---MSIRNFE-NSFNNNHQRLGLALYGALWLQVSIGF-FKPPRGNKRRSMWYVVHWLLGTA  168 (204)
Q Consensus        94 ~~H~~lq~~av~laiiG~i---l~i~~~~-~~f~~~H~~iGl~v~~l~~lQ~l~G~-lrp~~~~~~R~~~~~~H~~lG~~  168 (204)
                      ..|.-.-...+.+...|..   .+....+ +-|.++|-+.|+++.+++.++....- +.+    .+++.+...|..++.+
T Consensus        81 ~~H~~~g~~ll~~~~L~~lGG~~~~~~~~~~lf~spH~~~Gl~~~~L~~~s~al~~~i~~----g~~~~~R~lHi~lN~~  156 (175)
T PF13301_consen   81 DRHYRLGFALLAFMGLGALGGQLGTYRQNGKLFWSPHLWAGLAVVGLMAFSAALVPQIQK----GNRPWARRLHIYLNSL  156 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHHcchHHHHHcCCCCccCchHHHHHHHHHHHHHHHHHHHHHcc----CCchhHHHHHHHHHHH
Confidence            5576555544444333333   3333333 34899999999999999999987653 321    2255777899999999


Q ss_pred             HHHHHHHHHHHhhhhcC
Q 028753          169 ISLVGIINIYTGLKAYL  185 (204)
Q Consensus       169 ~~~Lgivni~~Gl~~~~  185 (204)
                      +.++=.+|..+|.+...
T Consensus       157 ~l~Lf~~q~itG~~ill  173 (175)
T PF13301_consen  157 ALLLFAWQAITGWRILL  173 (175)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999987643

>cd08554 Cyt_b561 Eukaryotic cytochrome b(561)

Probab=96.51  E-value=0.013  Score=45.55  Aligned_cols=94  Identities=19%  Similarity=0.242  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhheeccc----CCCCChhhHHHHHHHHHHHHHHHHHhccCCCCCCCcchhHhHHHHHHHH
Q 028753           93 VYLHIILQMLSVVLATVGAIMSIRNFE----NSFNNNHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTA  168 (204)
Q Consensus        93 f~~H~~lq~~av~laiiG~il~i~~~~----~~f~~~H~~iGl~v~~l~~lQ~l~G~lrp~~~~~~R~~~~~~H~~lG~~  168 (204)
                      |..|..+|.++..+...-.++......    +.....|..+..+.+.+.++-...++..+.  .+.++-++-.|.++|.+
T Consensus         2 f~~H~~lm~~g~~~l~~~~il~~r~~~~~~~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~--~~~~~h~~s~Hs~lGl~   79 (131)
T cd08554           2 FNWHPLLMVIGFVFLMGEALLVYRVFRLLTKRALKLLHAILHLLAFVLGLVGLLAVFLFHN--AGGIANLYSLHSWLGLA   79 (131)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCcccchhHHHHHHHH
Confidence            346999999998755544444444421    123457999999888888888888876543  23345566789999999


Q ss_pred             HHHHHHHHHHHhhhhcCCCc
Q 028753          169 ISLVGIINIYTGLKAYLIKH  188 (204)
Q Consensus       169 ~~~Lgivni~~Gl~~~~~~~  188 (204)
                      ++++...|...|+..+-.++
T Consensus        80 ~~~l~~~q~~~G~~~~~~~~   99 (131)
T cd08554          80 TVLLFLLQFLSGFVLFLLPL   99 (131)
T ss_pred             HHHHHHHHHHHHHHHHHhcc
Confidence            99999999999988764333

Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.

>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []

Probab=95.72  E-value=0.036  Score=42.95  Aligned_cols=91  Identities=19%  Similarity=0.231  Sum_probs=62.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheecc-----cC----CC
Q 028753           52 ASHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNF-----EN----SF  122 (204)
Q Consensus        52 ~~~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~-----~~----~f  122 (204)
                      +..+++|..++.+|.....-..++... .+...+.   +.+...|..+-.++.++.+.=.+.|+...     ++    .+
T Consensus        32 ~~~~~~H~~lq~l~~~~~~~G~~~~~~-~~~~~~~---~h~~s~H~~lG~~~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~  107 (137)
T PF03188_consen   32 KWWFRIHWILQVLALVFAIIGFVAIFI-NKNRNGK---PHFKSWHSILGLATFVLALLQPLLGFFRFFMPGLPRKRRPIW  107 (137)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHH-hccccCC---CCCCCchhhhhHHHHHHHHHHHHHHHHHHccCCCcccHHHHH
Confidence            467899999999998776544444433 3332211   22345698888887777666665555431     11    24


Q ss_pred             CChhhHHHHHHHHHHHHHHHHHhc
Q 028753          123 NNNHQRLGLALYGALWLQVSIGFF  146 (204)
Q Consensus       123 ~~~H~~iGl~v~~l~~lQ~l~G~l  146 (204)
                      ...|..+|.+++++.+.+...|+.
T Consensus       108 ~~~H~~~G~~~~~l~~~~i~~G~~  131 (137)
T PF03188_consen  108 NKWHRWLGYLIYVLAIATIFLGLT  131 (137)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567999999999999999999984

It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane

>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain

Probab=95.68  E-value=0.067  Score=41.48  Aligned_cols=91  Identities=19%  Similarity=0.149  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhheec-c----cCCCCChhhHHHHHHHHHHHHHHHHHhccCCCCCCCcchhHhHHHHHHHHH
Q 028753           95 LHIILQMLSVVLATVGAIMSIRN-F----ENSFNNNHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTAI  169 (204)
Q Consensus        95 ~H~~lq~~av~laiiG~il~i~~-~----~~~f~~~H~~iGl~v~~l~~lQ~l~G~lrp~~~~~~R~~~~~~H~~lG~~~  169 (204)
                      +|..+|+++..+..--.++.... .    ++.....|..+..+.+.+.++-...++...+.  +.++-++-.|.++|.++
T Consensus         1 ~H~~lm~~~f~~l~p~gil~~r~~~~~~~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~~~--~~~~~~~s~H~~lGl~~   78 (129)
T smart00665        1 LHPVLMILGFGFLMGEAILVARPLTRFLSKPTWFLLHVVLQILALVLGVIGLLAIFISHNE--SGIANFYSLHSWLGLAA   78 (129)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhhhHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--cCCCCccchhHHHHHHH
Confidence            38889999886544333333332 1    12245679999998888888877777765332  23455777899999999


Q ss_pred             HHHHHHHHHHhhhhcCCC
Q 028753          170 SLVGIINIYTGLKAYLIK  187 (204)
Q Consensus       170 ~~Lgivni~~Gl~~~~~~  187 (204)
                      +++...|...|+..+..+
T Consensus        79 ~~l~~~Q~~~G~~~~~~~   96 (129)
T smart00665       79 FVLAGLQWLSGFLRPLPP   96 (129)
T ss_pred             HHHHHHHHHHHHHHhcCC
Confidence            999999999999876554

Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.

>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product

Probab=95.52  E-value=0.066  Score=44.07  Aligned_cols=93  Identities=14%  Similarity=0.176  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhheecc------c-CCCCChhhHHHHHHHHHHHHHHHHHhccCCCCCCCcchhHhHHH
Q 028753           91 VFVYLHIILQMLSVVLATVGAIMSIRNF------E-NSFNNNHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHW  163 (204)
Q Consensus        91 ~Wf~~H~~lq~~av~laiiG~il~i~~~------~-~~f~~~H~~iGl~v~~l~~lQ~l~G~lrp~~~~~~R~~~~~~H~  163 (204)
                      ..|..|..+|.++..+.....++.+...      + +.-...|..+....+.+.++-....+..++  .+.++-++-.|.
T Consensus        19 ~~f~~Hp~~m~i~~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~~~~~--~~~~~hf~s~H~   96 (183)
T cd08761          19 SLFSWHPLLMSLGFLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIYYNKE--RNGKPHFTSWHG   96 (183)
T ss_pred             ceeehhHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCCCccchhH
Confidence            4688999999999887776666655432      1 123578999999888887766665554322  234556677899


Q ss_pred             HHHHHHHHHHHHHHHHhhhhcC
Q 028753          164 LLGTAISLVGIINIYTGLKAYL  185 (204)
Q Consensus       164 ~lG~~~~~Lgivni~~Gl~~~~  185 (204)
                      ++|..+.++...|...|+....
T Consensus        97 ~lGl~~~~l~~~Q~~~G~~~~~  118 (183)
T cd08761          97 ILGLVTVILIVLQALGGLALLY  118 (183)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHh
Confidence            9999999999999999996543

Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product

Probab=95.44  E-value=0.12  Score=42.70  Aligned_cols=95  Identities=15%  Similarity=0.092  Sum_probs=69.8

Q ss_pred             hHHHHHHHHHHHHHHHHHH-HHHhhhee--cccCCCCChhhHHHHHHHHHHHHHHHHHhccCCCCCCCcchhHhHHHHHH
Q 028753           90 RVFVYLHIILQMLSVVLAT-VGAIMSIR--NFENSFNNNHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLG  166 (204)
Q Consensus        90 ~~Wf~~H~~lq~~av~lai-iG~il~i~--~~~~~f~~~H~~iGl~v~~l~~lQ~l~G~lrp~~~~~~R~~~~~~H~~lG  166 (204)
                      +..++.|..+|.++..+.. +|..++-.  ..++.....|..+=++.+++.++-...|+...   ...++..+-.|.++|
T Consensus        33 ~~~~~~Hg~lm~iaw~~l~p~gil~ar~~~~~~~~~~~~H~~~q~~~~~~~i~g~~~~~~~~---~~~~~~~~~~H~~lG  109 (191)
T cd08760          33 DTLIKAHGVLMAIAWGILMPIGALLARYFLLGDPVWFYLHAGLQLLAVLLAIAGFVLGIVLV---QGGGGSLNNAHAILG  109 (191)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh---ccCCCCCcCcchhhh
Confidence            4568899999999877654 45444332  12233456899988888888888888887653   234555678999999


Q ss_pred             HHHHHHHHHHHHHhhhhcCCC
Q 028753          167 TAISLVGIINIYTGLKAYLIK  187 (204)
Q Consensus       167 ~~~~~Lgivni~~Gl~~~~~~  187 (204)
                      .++.++.++|...|+-.....
T Consensus       110 l~~~~l~~lQ~~~G~~~~~~~  130 (191)
T cd08760         110 IIVLALAILQPLLGLLRPHPG  130 (191)
T ss_pred             HHHHHHHHHHHHHHHhcCCCC
Confidence            999999999999999665443

Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product

Probab=94.73  E-value=0.25  Score=39.74  Aligned_cols=91  Identities=15%  Similarity=0.127  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhheeccc----CCCCChhhHHHHHHHHHHHHHHHHHhccCCCCCCCcchhHhHHHHHHH
Q 028753           92 FVYLHIILQMLSVVLATVGAIMSIRNFE----NSFNNNHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGT  167 (204)
Q Consensus        92 Wf~~H~~lq~~av~laiiG~il~i~~~~----~~f~~~H~~iGl~v~~l~~lQ~l~G~lrp~~~~~~R~~~~~~H~~lG~  167 (204)
                      -|..|..+|++|.++...-.++......    +.-...|..++++.+.+..+-...-+..+..  ...+-.+-.|-|+|.
T Consensus         6 ~Fn~HP~lm~~G~i~l~geaiL~~~~~~~~~k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~--~~~~hf~SlHswlGl   83 (143)
T cd08763           6 QFNVHPLCMVLGLVFLCGEALLVYRVFRNETKRSTKILHGLLHIMALVISLVGLVAVFDYHQA--NGYPDMYSLHSWCGI   83 (143)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHccc--cCCCccccHHHHHHH
Confidence            4889999999999987666666665432    1234689999999888887766665544332  235566779999999


Q ss_pred             HHHHHHHHHHHHhhhhc
Q 028753          168 AISLVGIINIYTGLKAY  184 (204)
Q Consensus       168 ~~~~Lgivni~~Gl~~~  184 (204)
                      +++++=..|...|+..+
T Consensus        84 ~t~~L~~lQ~~~G~~~f  100 (143)
T cd08763          84 LTFVLYFLQWLIGFSFF  100 (143)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999998765

Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561)

Probab=93.83  E-value=0.33  Score=41.64  Aligned_cols=93  Identities=16%  Similarity=0.169  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhheeccc--CC--CCChhhHHHHHHHHHHHHHHHHHhccCCCCCCCcchhHhHHHHHH
Q 028753           91 VFVYLHIILQMLSVVLATVGAIMSIRNFE--NS--FNNNHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLG  166 (204)
Q Consensus        91 ~Wf~~H~~lq~~av~laiiG~il~i~~~~--~~--f~~~H~~iGl~v~~l~~lQ~l~G~lrp~~~~~~R~~~~~~H~~lG  166 (204)
                      ..|..|..+|.++.++...=.++.+....  ++  -.-.|..+....+++.++-...-+-.+...++..+-..-.|.|+|
T Consensus        22 ~~Fn~HP~lM~~Gfi~l~geAiLvyr~~~~~~k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHSwlG  101 (214)
T cd08764          22 LQFNWHPLLMVLGLIFLYGNSILVYRVFRNTRKKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHSWLG  101 (214)
T ss_pred             ceEeecHHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHH
Confidence            46999999999999775555556655432  11  234899999988888777654444333333234455566899999


Q ss_pred             HHHHHHHHHHHHHhhhh
Q 028753          167 TAISLVGIINIYTGLKA  183 (204)
Q Consensus       167 ~~~~~Lgivni~~Gl~~  183 (204)
                      ..++++=..|...|+..
T Consensus       102 l~t~~L~~lQ~~~Gf~~  118 (214)
T cd08764         102 LTAVILFSLQWVGGFVS  118 (214)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999999854

Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes

Probab=93.82  E-value=2.1  Score=34.03  Aligned_cols=130  Identities=17%  Similarity=0.158  Sum_probs=82.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHhhhcccc-ccchhhhHHHHHHHHHHHHHHHHHHHHHhhheec--------------
Q 028753           53 SHIAVHGLLLWASMGFLTPVGILTIRMSNKV-DSVIKARVFVYLHIILQMLSVVLATVGAIMSIRN--------------  117 (204)
Q Consensus        53 ~~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~-~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~--------------  117 (204)
                      .....| +++++++.++...|..+....+.. ......+..+.+|..+-.+-.++.+.=+...+..              
T Consensus         7 ~~R~~H-w~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (188)
T PF00033_consen    7 FTRLLH-WLNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQI   85 (188)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSH
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHH
Confidence            345566 478888999999999875321110 0111345678899888776555444444433333              


Q ss_pred             ----c--------cCCCCChhhHHHHHHHHHHHHHHHHHhcc-----CCC------CCCCcchhHhHHHHHHHHHHHHHH
Q 028753          118 ----F--------ENSFNNNHQRLGLALYGALWLQVSIGFFK-----PPR------GNKRRSMWYVVHWLLGTAISLVGI  174 (204)
Q Consensus       118 ----~--------~~~f~~~H~~iGl~v~~l~~lQ~l~G~lr-----p~~------~~~~R~~~~~~H~~lG~~~~~Lgi  174 (204)
                          .        .+.++...+..-++++.++..+++.|+..     ...      ....+.....+|.+.+.++..+-.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~~~~~~~~~~~~~~~~~~~~~~~~~iH~~~~~ll~~~i~  165 (188)
T PF00033_consen   86 PQYRLFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLIMLWFFWWPLPPWLLPPPGLAEWARLIHFILAYLLLAFII  165 (188)
T ss_dssp             HHHHTT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHHC-----TTTTGGGS-HHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence                0        12356678888889999999999999866     111      112356678999999999887777


Q ss_pred             HHHHHhhhh
Q 028753          175 INIYTGLKA  183 (204)
Q Consensus       175 vni~~Gl~~  183 (204)
                      +=++.++..
T Consensus       166 ~Hi~~a~~~  174 (188)
T PF00033_consen  166 IHIYAAIFH  174 (188)
T ss_dssp             HHHHHHHHB
T ss_pred             HHHHHHHHH
Confidence            767665543

The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.

>PLN02810 carbon-monoxide oxygenase

Probab=93.42  E-value=1.9  Score=37.46  Aligned_cols=132  Identities=16%  Similarity=0.099  Sum_probs=88.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheecc-----c---C-C
Q 028753           51 TASHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNF-----E---N-S  121 (204)
Q Consensus        51 ~~~~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~-----~---~-~  121 (204)
                      ++....+|..+..+|...- -+|+..+--.++..+.   +.-+-+|..+-+.++++...=.+.|+..+     .   | .
T Consensus        76 k~~~K~iH~~lh~~Al~l~-vvGl~Avf~~Hn~~~i---~nlySLHSWlGl~tv~Lf~lQw~~Gf~~Fl~P~~~~~~R~~  151 (231)
T PLN02810         76 KEVKKLIHLVLHAIALILG-IFGICAAFKNHNESGI---ANLYSLHSWLGIGIISLYGIQWIYGFIVFFFPGGSTNLRSG  151 (231)
T ss_pred             cchHHHHHHHHHHHHHHHH-HHHHHHHHHhccccCC---CceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHH
Confidence            3567889999999998654 5666655444443221   34567899998888887666666666331     1   1 2


Q ss_pred             CCChhhHHHHHHHHHHHHHHHHHhccC-----CCCCCCcchhHhHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 028753          122 FNNNHQRLGLALYGALWLQVSIGFFKP-----PRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKAYLI  186 (204)
Q Consensus       122 f~~~H~~iGl~v~~l~~lQ~l~G~lrp-----~~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~~~~  186 (204)
                      .--.|...|++++.+.+.....|+.-.     .++-++.+.-...=..+|.++++.|..-++.-....+.
T Consensus       152 ~lP~Hv~~Gl~if~LAiata~lGi~EKl~Fl~~~~~~~~~~Ea~lvN~~Glliv~fg~~V~~~~~~~~~~  221 (231)
T PLN02810        152 SLPWHVLFGLFVYILAVGNAALGFLEKLTFLESGGLDKYGSEALLVNFTAIITILYGAFVVLTALAQSPS  221 (231)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCchhhhHHHHHHHHHHHHHHHHHhhccCCCC
Confidence            457899999999999999999996321     11111112223334479999999999888877766554

>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes

Probab=93.27  E-value=0.23  Score=39.72  Aligned_cols=90  Identities=18%  Similarity=0.183  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhee--c--cc----CCCCChhhHHHHHHHHHHHHHHHHHhcc------------------
Q 028753           94 YLHIILQMLSVVLATVGAIMSIR--N--FE----NSFNNNHQRLGLALYGALWLQVSIGFFK------------------  147 (204)
Q Consensus        94 ~~H~~lq~~av~laiiG~il~i~--~--~~----~~f~~~H~~iGl~v~~l~~lQ~l~G~lr------------------  147 (204)
                      -+|+..-.+-.++.+.|+.+...  .  .+    ....+.|..+|++..++..+..+.++.+                  
T Consensus        10 ~~Hw~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (188)
T PF00033_consen   10 LLHWLNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIPQYR   89 (188)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHhh
Confidence            46887777777777788887643  1  11    1257899999999999999999999888                  


Q ss_pred             CC--CCCCCcchhHhHHHHHHHHHHHHHHHHHHHhhhh
Q 028753          148 PP--RGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKA  183 (204)
Q Consensus       148 p~--~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~  183 (204)
                      +.  +..+..+.+|...+.....++.+..+...+|+-+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~  127 (188)
T PF00033_consen   90 LFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLIM  127 (188)
T ss_dssp             TT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            21  1123345567788888888888888888999988

The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.

>PLN02680 carbon-monoxide oxygenase

Probab=93.13  E-value=2  Score=37.40  Aligned_cols=128  Identities=17%  Similarity=0.167  Sum_probs=84.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheecc-----c---C-C
Q 028753           51 TASHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNF-----E---N-S  121 (204)
Q Consensus        51 ~~~~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~-----~---~-~  121 (204)
                      ++....+|..+..+|.... -+|+..+-..+...+.   +.-.-+|.++-+.++++..+=.+.|+..+     .   + .
T Consensus        76 k~~~K~iH~~L~~lA~~l~-vvGl~avfk~hn~~~~---~nfySlHSWlGl~t~iL~~lQ~~~Gf~~f~~P~~~~~~R~~  151 (232)
T PLN02680         76 KNLKKLVHLTLQFLAFCLS-LIGVWAALKFHNEKGI---DNFYSLHSWLGLACLFLFSLQWAAGFVTFWYPGGSRNSRAS  151 (232)
T ss_pred             chhHHHHHHHHHHHHHHHH-HHHHHHHHHhccccCc---cccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHH
Confidence            4566779999999998766 5666655444442221   23455899998988887665555555431     1   1 2


Q ss_pred             CCChhhHHHHHHHHHHHHHHHHHhccC------CCCCCCcchhHhHHHHHHHHHHHHHHHHHHHhhh
Q 028753          122 FNNNHQRLGLALYGALWLQVSIGFFKP------PRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLK  182 (204)
Q Consensus       122 f~~~H~~iGl~v~~l~~lQ~l~G~lrp------~~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~  182 (204)
                      ..-.|...|++++.+.+.....|+.-.      .+.-+..+.-...=..+|.+++++|..-++.-..
T Consensus       152 ~~p~H~~~G~~if~LaiaT~~lG~~Ek~~f~~~~~~~~~~~~e~~lvN~~gl~~~~fg~~V~~~v~~  218 (232)
T PLN02680        152 LLPWHVFFGIYIYALAVATATTGILEKATFLQSNKVISRYSTEAMLVNSLGILIVVLGGFVILAIVT  218 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCCCCchhhhHhHHHHHHHHHHHHHHHhhcc
Confidence            456899999999999999999997421      1111111112223347899999999888776665

>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi

Probab=93.09  E-value=1.6  Score=33.19  Aligned_cols=87  Identities=17%  Similarity=0.200  Sum_probs=58.5

Q ss_pred             hHHHHHHHHHHHHHHHHHH-HHHhhheecccCCCCChhhHHHHHHHHHHHHHHHHHhccCCCCCCCcchhHhHHHHHHHH
Q 028753           90 RVFVYLHIILQMLSVVLAT-VGAIMSIRNFENSFNNNHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTA  168 (204)
Q Consensus        90 ~~Wf~~H~~lq~~av~lai-iG~il~i~~~~~~f~~~H~~iGl~v~~l~~lQ~l~G~lrp~~~~~~R~~~~~~H~~lG~~  168 (204)
                      +...+.|..+|.++..+.. +|.+++...     +++|...=.+-+++.++-.+.|.....+.  -.-..+-.|.-+|.+
T Consensus        15 ~~~l~~Hi~lm~la~~il~Pi~lvL~~~~-----sr~~~~~q~~~~~l~~~g~~~g~~~~~~~--p~lyp~n~H~k~g~i   87 (105)
T PF10348_consen   15 RSALYAHIVLMTLAWVILYPIGLVLGNAR-----SRWHLPVQTVFLVLMILGLFLGSVYNGST--PDLYPNNAHGKMGWI   87 (105)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----chHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCCCCHHHHHHHH
Confidence            4568889999999875433 666665544     33566555555556666666665432211  112357799999999


Q ss_pred             HHHHHHHHHHHhhhh
Q 028753          169 ISLVGIINIYTGLKA  183 (204)
Q Consensus       169 ~~~Lgivni~~Gl~~  183 (204)
                      +..+.++|...|+-.
T Consensus        88 l~~l~~~q~~~gv~~  102 (105)
T PF10348_consen   88 LFVLMIVQVILGVIL  102 (105)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998743

Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.

>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product

Probab=92.05  E-value=3  Score=34.86  Aligned_cols=92  Identities=15%  Similarity=0.100  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhheecccC----C--CCChhhHHHHHHHHHHHHHHHHHhccCCCCCCCcchhHhHHHHH
Q 028753           92 FVYLHIILQMLSVVLATVGAIMSIRNFEN----S--FNNNHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLL  165 (204)
Q Consensus        92 Wf~~H~~lq~~av~laiiG~il~i~~~~~----~--f~~~H~~iGl~v~~l~~lQ~l~G~lrp~~~~~~R~~~~~~H~~l  165 (204)
                      .|.+|..+|+++.++.-.=+++.+....+    +  ....|..+=.+.+++..+-...-+-.++.  +..+-..-.|.|+
T Consensus        34 ~Fn~HP~lMv~Gfi~L~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~--~~~~nlySlHSWl  111 (179)
T cd08762          34 NFNWHPVLMVTGMVVLYGNAALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNV--HHTANLYSLHSWV  111 (179)
T ss_pred             ceeehHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCccchhhHHHHH
Confidence            69999999999988765444555553221    1  24578877777777766665555543332  1233344579999


Q ss_pred             HHHHHHHHHHHHHHhhhhcC
Q 028753          166 GTAISLVGIINIYTGLKAYL  185 (204)
Q Consensus       166 G~~~~~Lgivni~~Gl~~~~  185 (204)
                      |..++.+=..|...|+..+-
T Consensus       112 Gl~t~~Lf~lQ~~~Gf~~f~  131 (179)
T cd08762         112 GICTVALFTCQWVMGFTSFL  131 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999987753

Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1

Probab=91.95  E-value=0.67  Score=37.31  Aligned_cols=91  Identities=20%  Similarity=0.141  Sum_probs=63.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheec---cc------CCC
Q 028753           52 ASHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRN---FE------NSF  122 (204)
Q Consensus        52 ~~~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~---~~------~~f  122 (204)
                      +....+|+++..+|.... -+|+.++-..|...+.   +.-.-+|..+-+.++++...=...|+..   .+      ...
T Consensus        38 ~~~k~iH~~l~~la~~~~-vvGl~avf~~~~~~~~---~~~~SlHSwlGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~  113 (144)
T cd08766          38 EVQKAVHLTLHLVALVLG-IVGIYAAFKFHNEVGI---PNLYSLHSWLGIGTISLFGLQWLFGFVTFWFPGASRNTRAAL  113 (144)
T ss_pred             chhHHHHHHHHHHHHHHH-HHHHHHHHHHhcccCc---cccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence            345679999999998765 5666655444433221   2234479998888888766655555432   11      124


Q ss_pred             CChhhHHHHHHHHHHHHHHHHHhc
Q 028753          123 NNNHQRLGLALYGALWLQVSIGFF  146 (204)
Q Consensus       123 ~~~H~~iGl~v~~l~~lQ~l~G~l  146 (204)
                      .-.|...|.+++.+.+.....|+.
T Consensus       114 ~p~H~~~G~~~~~la~~t~~lGl~  137 (144)
T cd08766         114 LPWHVFLGLAIYYLAIATAETGLL  137 (144)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            568999999999999999999985

Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>COG3038 CybB Cytochrome B561 [Energy production and conversion]

Probab=91.38  E-value=2.5  Score=35.38  Aligned_cols=100  Identities=17%  Similarity=0.207  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhheecccC----CCCChhhHHHHHHHHHHHHHHHHHhccCCCCCCC------cchhHhHH
Q 028753           93 VYLHIILQMLSVVLATVGAIMSIRNFEN----SFNNNHQRLGLALYGALWLQVSIGFFKPPRGNKR------RSMWYVVH  162 (204)
Q Consensus        93 f~~H~~lq~~av~laiiG~il~i~~~~~----~f~~~H~~iGl~v~~l~~lQ~l~G~lrp~~~~~~------R~~~~~~H  162 (204)
                      ..+||..-.+-......|...+.....+    .+.+.|..+|+.+..++++-.+..+..|.++-..      |..-+..|
T Consensus        13 i~lHWl~allv~~~~~~g~~~~~~~~~~~~~~~~~~~Hks~Gi~vl~L~v~Rl~wrl~~~~p~~~~~~~~~~~~aA~~~H   92 (181)
T COG3038          13 IALHWLMALLVIGAFALGELMGFLPRGPGLYFLLYELHKSIGILVLALMVLRLLWRLRNPAPPIVPGPPPWQRKAAKLGH   92 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCChHHHHHHHHHH
Confidence            4567766555555555555555554433    3579999999999999999999998766553211      22224444


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcCCCccceEEEeE
Q 028753          163 WLLGTAISLVGIINIYTGLKAYLIKHQEALRFGL  196 (204)
Q Consensus       163 ~~lG~~~~~Lgivni~~Gl~~~~~~~~~~i~~~v  196 (204)
                      .    .++++-++--.+|.-....++.....+|.
T Consensus        93 l----~LY~l~lalPlsG~l~~~~~g~~~~~FG~  122 (181)
T COG3038          93 L----ALYLLMLALPLSGYLLSTASGRPISVFGL  122 (181)
T ss_pred             H----HHHHHHHHHHHHHHHHHhcCCCCceecch
Confidence            3    34445455556776665544444455554

>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product

Probab=91.29  E-value=1.1  Score=36.53  Aligned_cols=92  Identities=13%  Similarity=0.214  Sum_probs=66.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheecc-----c----CC
Q 028753           51 TASHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNF-----E----NS  121 (204)
Q Consensus        51 ~~~~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~-----~----~~  121 (204)
                      ++....+|..+..+|.... .+|+.++-..|...+.   +.-.-+|..+-++++++...=.+.|+..+     +    ..
T Consensus        44 k~~~k~iH~~L~~~a~~~~-i~Gl~avf~~hn~~~~---~~fySlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~~~~~~r~~  119 (153)
T cd08765          44 KLLMKLIHAGLHILAFILA-IISVVAVFVFHNAKNI---PNMYSLHSWVGLAAVILYPLQLVLGISVYLLPVAPVRLRAA  119 (153)
T ss_pred             chhhHHHHHHHHHHHHHHH-HHHHHHHHHHccccCC---CccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHH
Confidence            3466779999999998655 5666655555443222   34566899999988887766666665432     1    13


Q ss_pred             CCChhhHHHHHHHHHHHHHHHHHhc
Q 028753          122 FNNNHQRLGLALYGALWLQVSIGFF  146 (204)
Q Consensus       122 f~~~H~~iGl~v~~l~~lQ~l~G~l  146 (204)
                      ..-.|...|++++.+.+.-...|+.
T Consensus       120 ~~p~H~~~G~~i~~Lai~t~~lG~~  144 (153)
T cd08765         120 LMPLHVYSGLFIFGTVIATALMGIT  144 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5779999999999999999999975

Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me

>PF13172 PepSY_TM_1: PepSY-associated TM helix

Probab=90.17  E-value=0.64  Score=28.10  Aligned_cols=32  Identities=22%  Similarity=0.366  Sum_probs=26.6

Q ss_pred             CcchhHhHHHHHHHHHHHHHHHHHHHhhhhcC
Q 028753          154 RRSMWYVVHWLLGTAISLVGIINIYTGLKAYL  185 (204)
Q Consensus       154 ~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~~~  185 (204)
                      .|+.+..+|++.|....+.-..-+.+|+.+..
T Consensus         1 ~r~~~~~~H~~~g~~~~~~ll~~~lTG~~l~~   32 (34)
T PF13172_consen    1 FRKFWRKIHRWLGLIAAIFLLLLALTGALLNF   32 (34)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            36778889999999999998888888887654

>PLN02351 cytochromes b561 family protein

Probab=89.20  E-value=13  Score=32.58  Aligned_cols=133  Identities=20%  Similarity=0.202  Sum_probs=85.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheecc---c-----C-CC
Q 028753           52 ASHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNF---E-----N-SF  122 (204)
Q Consensus        52 ~~~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~---~-----~-~f  122 (204)
                      +....+|..+..+|.... -+|+.. .+-+...   ..+.-.-+|..+-+.++++..+=.+.|+..+   +     + ..
T Consensus        81 k~~K~lH~~Lh~~Ali~~-vvGl~a-~fh~~~~---~i~nlySLHSWlGl~tv~Lf~lQwv~Gf~~F~~P~~~~~~Ra~~  155 (242)
T PLN02351         81 KTKKSVHLWLQGLALASG-VFGIWT-KFHGQDG---IVANFYSLHSWMGLICVSLFGAQWLTGFMSFWHRGEMRTTRTTV  155 (242)
T ss_pred             hHHHHHHHHHHHHHHHHH-HHHHHH-HHhcccC---CccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHH
Confidence            357889999999998775 667666 3322211   0123577899999988887665555555432   1     1 24


Q ss_pred             CChhhHHHHHHHHHHHHHHHHHhccC------CCCCCCcchhHhHHHHHHHHHHHHHHHHHHHhhh-hcCCCcc
Q 028753          123 NNNHQRLGLALYGALWLQVSIGFFKP------PRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLK-AYLIKHQ  189 (204)
Q Consensus       123 ~~~H~~iGl~v~~l~~lQ~l~G~lrp------~~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~-~~~~~~~  189 (204)
                      .-.|...|.+++.+.+.-.+.|+.-.      .++-...+.-...=..+|.+++++|..-++.-.. .|.++.+
T Consensus       156 ~P~Hv~~Gl~if~LaiaTa~lGl~EKl~F~~~~~~y~~~~~Ea~lvN~~Glliv~fG~~Vv~~~~~p~~kr~~~  229 (242)
T PLN02351        156 LPWHVFLGLYTYGLAVATAETGLLEKLTFLQTKRNVSKHGSESMVVNGLGLGLALLSGIVILAAVLPKYQSHSS  229 (242)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccCCchhhhHHHHHHHHHHHHHHHHHhhcCccccCCCc
Confidence            56899999999999999999997421      1111222222334447899999999777765544 3444443

>PF13301 DUF4079: Protein of unknown function (DUF4079)

Probab=88.65  E-value=1.7  Score=36.13  Aligned_cols=86  Identities=17%  Similarity=0.155  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHHhhheecccCCCCChhhHHHHHHHHHHHHHHHHHhccCCCCCCCcchhHhHHHHHHHHHHHHHHHHH
Q 028753           98 ILQMLSVVLATVGAIMSIRNFENSFNNNHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTAISLVGIINI  177 (204)
Q Consensus        98 ~lq~~av~laiiG~il~i~~~~~~f~~~H~~iGl~v~~l~~lQ~l~G~lrp~~~~~~R~~~~~~H~~lG~~~~~Lgivni  177 (204)
                      +.|....++...+-.-.+.  ..+....|..+|.++++++.+-.++|..-  ...+..+++.--|-+.|..+..+=.++.
T Consensus        57 ~~~~~~~~~~~~~~~~~l~--~~~~r~~H~~~g~~ll~~~~L~~lGG~~~--~~~~~~~lf~spH~~~Gl~~~~L~~~s~  132 (175)
T PF13301_consen   57 IARAIFLILALTGTRKELV--KLKARDRHYRLGFALLAFMGLGALGGQLG--TYRQNGKLFWSPHLWAGLAVVGLMAFSA  132 (175)
T ss_pred             hhHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHcchHH--HHHcCCCCccCchHHHHHHHHHHHHHHH
Confidence            3344444444444444443  23578899999999999999999988531  0011223555569999999999999999


Q ss_pred             HHhhhhcCCC
Q 028753          178 YTGLKAYLIK  187 (204)
Q Consensus       178 ~~Gl~~~~~~  187 (204)
                      .+.-+++..+
T Consensus       133 al~~~i~~g~  142 (175)
T PF13301_consen  133 ALVPQIQKGN  142 (175)
T ss_pred             HHHHHHccCC
Confidence            8888887654

>PRK11513 cytochrome b561; Provisional

Probab=88.25  E-value=5.5  Score=32.70  Aligned_cols=65  Identities=15%  Similarity=0.043  Sum_probs=42.3

Q ss_pred             CCChhhHHHHHHHHHHHHHHHHHhccCCCCCCCc-chh-HhHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 028753          122 FNNNHQRLGLALYGALWLQVSIGFFKPPRGNKRR-SMW-YVVHWLLGTAISLVGIINIYTGLKAYLI  186 (204)
Q Consensus       122 f~~~H~~iGl~v~~l~~lQ~l~G~lrp~~~~~~R-~~~-~~~H~~lG~~~~~Lgivni~~Gl~~~~~  186 (204)
                      +.+.|..+|+.++.++++-.+..+.++.++.... +.| +..=...-..++++-++...+|+.+...
T Consensus        41 ~~~~H~s~G~~vl~L~v~Rl~~r~~~~~P~~~~~~~~~~~~~A~~~H~~LY~lli~~plsG~~~~~~  107 (176)
T PRK11513         41 INMIHVSCGISILVLMVVRLLLRLKYPTPPIVPKPKPMMTGLAHLGHLVIYLLFIALPVIGLVMMYN  107 (176)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4578999999999999999999998655432221 222 2211233356666666777777776543

>KOG1619 consensus Cytochrome b [Energy production and conversion]

Probab=86.88  E-value=11  Score=33.14  Aligned_cols=93  Identities=18%  Similarity=0.204  Sum_probs=62.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheecc----c----C-
Q 028753           50 QTASHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNF----E----N-  120 (204)
Q Consensus        50 ~~~~~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~----~----~-  120 (204)
                      +++....+|+.+-.+|.... -.|+..+--..+...   -....-+|..+-+..+.+-.+=.+.|+..+    .    | 
T Consensus        84 ~k~~~KliH~~LH~~Alvl~-i~gl~avf~~hn~~~---i~NfySLHSWlGl~~v~ly~~Q~v~GF~tfl~pg~~~~~Rs  159 (245)
T KOG1619|consen   84 SKKVSKLIHLGLHIIALVLA-IIGLCAVFDSHNLVG---IANFYSLHSWLGLCVVILYSLQWVFGFFTFLFPGSPESYRS  159 (245)
T ss_pred             hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhcC---ccceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHh
Confidence            34466679999999887644 333333322222111   123467899999988887666666666542    1    1 


Q ss_pred             CCCChhhHHHHHHHHHHHHHHHHHhc
Q 028753          121 SFNNNHQRLGLALYGALWLQVSIGFF  146 (204)
Q Consensus       121 ~f~~~H~~iGl~v~~l~~lQ~l~G~l  146 (204)
                      ..--.|..+|+..+++.+.|...|+.
T Consensus       160 ~lmP~H~~~Gl~~f~lai~ta~~Gl~  185 (245)
T KOG1619|consen  160 RLMPWHVFLGLAIFILAIVTALTGLL  185 (245)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            25678999999999999999999984

>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit

Probab=86.67  E-value=7.1  Score=32.13  Aligned_cols=27  Identities=19%  Similarity=0.267  Sum_probs=21.1

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHhhhhcC
Q 028753          159 YVVHWLLGTAISLVGIINIYTGLKAYL  185 (204)
Q Consensus       159 ~~~H~~lG~~~~~Lgivni~~Gl~~~~  185 (204)
                      |..-+..-..++++..+.+.+|+.++.
T Consensus       113 n~~~k~~~~~l~~~~~~~~lTG~~~~~  139 (211)
T TIGR02125       113 NPLQFVAYFGFIVLILFMILTGLALYY  139 (211)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            556666677788888899999998874

This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.

>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently

Probab=84.87  E-value=13  Score=29.42  Aligned_cols=90  Identities=16%  Similarity=0.137  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhheecccC----CC--CChhhHHHHHHHHHHHHHHHHH---------------------hc
Q 028753           94 YLHIILQMLSVVLATVGAIMSIRNFEN----SF--NNNHQRLGLALYGALWLQVSIG---------------------FF  146 (204)
Q Consensus        94 ~~H~~lq~~av~laiiG~il~i~~~~~----~f--~~~H~~iGl~v~~l~~lQ~l~G---------------------~l  146 (204)
                      -+|+..-..-+.+...|+.+.......    ..  .+.|..+|+++..+.++=.+..                     ..
T Consensus         8 ~~HW~~a~~~i~l~~tG~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (182)
T PF01292_consen    8 ILHWLNALSFIALIATGLWIHFPPPGLYFGDFGGVRNWHVIAGLLLFALLIFRLLWRWRRLFPWSDDVFFQVKNYLYFLL   87 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccccccccchHHhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHh
Confidence            358877777777777777665544321    12  6789999999988887666655                     22


Q ss_pred             cCCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHhhhhcC
Q 028753          147 KPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKAYL  185 (204)
Q Consensus       147 rp~~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~~~  185 (204)
                      +.+.  +....+|..-+....+.+++..+.+.+|+-++.
T Consensus        88 ~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~iTG~~~~~  124 (182)
T PF01292_consen   88 RGKP--PPAGKYNPGQKIVHWVLYLLLLLLPITGLLLWF  124 (182)
T ss_pred             cCCC--CCCCcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2221  112223333334555666777777788888754

This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane

>PF13706 PepSY_TM_3: PepSY-associated TM helix

Probab=84.84  E-value=1.8  Score=26.70  Aligned_cols=29  Identities=24%  Similarity=0.337  Sum_probs=23.5

Q ss_pred             cchhHhHHHHHHHHHHHHHHHHHHHhhhh
Q 028753          155 RSMWYVVHWLLGTAISLVGIINIYTGLKA  183 (204)
Q Consensus       155 R~~~~~~H~~lG~~~~~Lgivni~~Gl~~  183 (204)
                      |+.+...|+|+|.++-++-.+-+++|.-+
T Consensus         1 rr~~~~~H~W~Gl~~g~~l~~~~~tG~~~   29 (37)
T PF13706_consen    1 RRILRKLHRWLGLILGLLLFVIFLTGAVM   29 (37)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            56778899999998888888888888655

>PF13703 PepSY_TM_2: PepSY-associated TM helix

Probab=81.36  E-value=12  Score=27.07  Aligned_cols=30  Identities=27%  Similarity=0.440  Sum_probs=24.1

Q ss_pred             CCcchhHhHHHHHHHHHHHHHHHHHHHhhhh
Q 028753          153 KRRSMWYVVHWLLGTAISLVGIINIYTGLKA  183 (204)
Q Consensus       153 ~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~  183 (204)
                      +.|+ +.-.|...|......-.+-+.+|+..
T Consensus        56 ~~r~-~~dlH~~~G~~~~~~ll~~a~TG~~~   85 (88)
T PF13703_consen   56 SKRR-WFDLHRVLGLWFLPFLLVIALTGLFF   85 (88)
T ss_pred             ccCh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455 66699999999999888888888754

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	204
d1q90b_	212	Cytochrome b6 subunit of the cytochrome b6f comple	81.29

>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Membrane and cell surface proteins and peptides
fold: Heme-binding four-helical bundle
superfamily: Transmembrane di-heme cytochromes
family: Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
domain: Cytochrome b6 subunit of the cytochrome b6f complex
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=81.29  E-value=0.99  Score=18.66  Aligned_cols=36  Identities=8%  Similarity=0.032  Sum_probs=27.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             565047988899999999989878875765426665
Q 028753           49 PQTASHIAVHGLLLWASMGFLTPVGILTIRMSNKVD   84 (204)
Q Consensus        49 ~~~~~~~~~Hg~LM~vAw~iL~P~GIl~aR~~k~~~   84 (204)
                      |+.....+.-|.+....+.+..-.|++++-+..+..
T Consensus        24 P~~~~~~~~~Gsll~~~~~iqi~TGi~L~~~Y~p~~   59 (212)
T d1q90b_          24 PPHVNIFYCIGGITFTCFLVQVATGFAMTFYYRPTV   59 (212)
T ss_dssp             CTTCCSGGGHHHHHHHHHHHHHHHHHHHTTTCCCST
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             987629999999999999999999999999997100