Citrus Sinensis ID: 028758

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200----
Protein Sequence
MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVCSIFSSAIFFIHNKTEIYDPFYALLVHKISKNALICHLLVNDYRLQRL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHccccccccccccccccEEEEcccccEEEEEccccEEEEccccccccEEEEEEccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccEEEEHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEHcccccccccccccEEccccccHHHccccEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHccccccEEEEcccccEEEcccccEEEEEccccEEEEcEEcccccEEEEEEccccccHHHcccHHHHHHHHHHHHcccccccEEEcHHHHHEEEHHcHHHHHHHHHHHcHHHHcc
Coil and Loop (DISEMBL)
maslqhspsssihqtsflnslpqlgvqkyggvlpAVCRRGISLIVKAEhasmassansldkcgrrqmIAVGVIapwvslvnqtppsfaaesnkgflsvtdkkdgysfvypfgwqeVIIEGQDKVFKDVIEplesvsvnliptgkqdirdfgppqevcsIFSSAIFFIhnkteiydPFYALLVHKISKNALICHLLVndyrlqrl
Flexible Loop (DISEMBL)
maslqhspsssiHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVCSIFSSAIFFIHNKTEIYDPFYALLVHKISKNALICHLLVNDYRLQRL
Low Complexity Region (SEG)
MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVCSIFSSAIFFIHNKTEIYDPFYALLVHKISKNALICHLLVNDYRLQRL
Disordered region (IsUnstruct)
****************FLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHA********LDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVCSIFSSAIFFIHNKTEIYDPFYALLVHKISKNALICHLLVNDYRL***
Disordered Region (DISOPRED)
******************************************************************MIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVCSIFSSAIFFIHNKTEIYDPFYALLVHKISKNALICHLLVNDYRLQR*
Disordered Region (DISEMBL)
**************TSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVCSIFSSAIFFIHNKTEIYDPFYALLVHKISKNALICHLLVNDYRLQRL
Disordered Region (DISPRO)
*******PSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAE************KCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVCSIFSSAIFFIHNKTEIYDPFYALLVHKISKNALICHLLVNDYRLQRL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVCSIFSSAIFFIHNKTEIYDPFYALLVHKISKNALICHLLVNDYRLQRL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	204	2.2.26 [Sep-21-2011]
P82538	230	PsbP-like protein 1, chlo	yes	no	0.705	0.626	0.575	6e-43
O80634	238	PsbP-like protein 2, chlo	no	no	0.607	0.521	0.333	3e-10
P82537	30	Thylakoid lumenal 17 kDa	N/A	no	0.147	1.0	0.766	4e-06
O49080	264	Oxygen-evolving enhancer	N/A	no	0.558	0.431	0.317	5e-05
O23403	287	PsbP domain-containing pr	no	no	0.490	0.348	0.314	0.0002

>sp|P82538|PPL1_ARATH PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPL1 PE=1 SV=1

 Score =  173 bits (439), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 84/146 (57%), Positives = 114/146 (78%), Gaps = 2/146 (1%)

Query: 31  GVLPAVCRRGISLIVKAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAE 90
           GV+P+  ++G+S +VKAEH S +SS++  DKC RR ++  GV+APW+SL+++ P SFAAE
Sbjct: 18  GVIPS-SKKGLSFLVKAEHHSSSSSSHLQDKCQRRLIVTFGVVAPWISLLSRAPLSFAAE 76

Query: 91  SNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDF 150
           S KGFL+V+D KD Y+F+YPFGWQEV+IEGQDKV+KDVIEPLESVSVNL+PT KQ I++F
Sbjct: 77  SKKGFLAVSDNKDAYAFLYPFGWQEVVIEGQDKVYKDVIEPLESVSVNLVPTSKQTIKEF 136

Query: 151 GPPQEVCSIFSSAIFFIHN-KTEIYD 175
           GPP+++       +    N KT + D
Sbjct: 137 GPPKQIAETLIKKVLAPPNQKTTLID 162

Required for efficient repair of photodamaged PSII, but not tightly associated with the complex.
Arabidopsis thaliana (taxid: 3702)

>sp|O80634|PPL2_ARATH PsbP-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=PPL2 PE=1 SV=2

 Score = 65.1 bits (157), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 63/135 (46%), Gaps = 11/135 (8%)

Query: 46  KAEHASMASSANSLDKCGRRQ-MIAVGVIAPWVSLVNQTPPS---FAAESNKGFLSVTDK 101
           KA+ +       S +   RRQ ++ VG      +LV  + P+    A E  K +    D+
Sbjct: 41  KADSSESTYQKGSGNNWKRRQALVGVG------TLVATSIPATLLLAEEIPKSYSPFVDR 94

Query: 102 KDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVCSIFS 161
           +DGYS+ YP  W+E      D  FKD    L++V V  IPT K DI + GP +EV     
Sbjct: 95  EDGYSYYYPSDWREFDFRAHDSAFKDRYLQLQNVRVRFIPTEKNDIHEVGPMEEVVYDLV 154

Query: 162 SAIFFIHNK-TEIYD 175
              F   N+   IYD
Sbjct: 155 KHKFAAPNQVATIYD 169

Required for accumulation of the chloroplast NAD(P)H dehydrogenase (NDH) complex. May be a subunit of this complex.

Arabidopsis thaliana (taxid: 3702)

>sp|P82537|TL1X_SPIOL Thylakoid lumenal 17 kDa protein (Fragment) OS=Spinacia oleracea PE=1 SV=1

 Score = 51.2 bits (121), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/30 (76%), Positives = 25/30 (83%)

Query: 89  AESNKGFLSVTDKKDGYSFVYPFGWQEVII 118
           AES KGFL V DKKDGY+F+YPFG QEV I
Sbjct: 1   AESKKGFLPVIDKKDGYTFLYPFGGQEVSI 30

Spinacia oleracea (taxid: 3562)

>sp|O49080|PSBP_FRIAG Oxygen-evolving enhancer protein 2, chloroplastic OS=Fritillaria agrestis GN=PSBP PE=2 SV=1

 Score = 47.8 bits (112), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 15/129 (11%)

Query: 43  LIVKAEHASMASSANSLDKCGRRQMI-------AVGV-IAPWVSLVNQTPPSFA-AESNK 93
           LI +A+ +S  +  NS     RR  +       AVG  IAP  +   +    F  A++N 
Sbjct: 36  LICRAQKSS-DTDENSSTAVSRRLALTILIGSAAVGTKIAPANAAYGEAANVFGKAKTNT 94

Query: 94  GFLSVTDKKDGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDF 150
            FL  T   DG++ + P  W   +EV   GQ   ++D  +   +VSV + PT K+ I D+
Sbjct: 95  DFLPYTG--DGFNLLIPAKWNPSKEVEFPGQVLRYEDNFDVTSNVSVTVTPTSKKSITDY 152

Query: 151 GPPQEVCSI 159
           G P+E  S 
Sbjct: 153 GTPEEFLST 161

May be involved in the regulation of photosystem II.

Fritillaria agrestis (taxid: 64177)

>sp|O23403|PPD1_ARATH PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPD1 PE=1 SV=1

 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 8/108 (7%)

Query: 54  SSANSLDKCGRRQMIAVGVIAPWVSLVNQT--PPSFAAESNKGFLSVTDKKDGYSFVYPF 111
           + A  +   GRR+ + +G++   + +V+Q   P +FA  S   F    D  DGYSF YP 
Sbjct: 69  TDAKQVCAVGRRKSMMMGLLMSGL-IVSQANLPTAFA--STPVFREYIDTFDGYSFKYPQ 125

Query: 112 GWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQD---IRDFGPPQEV 156
            W +V   G D  F+D +   E++SV        +   + D G P+EV
Sbjct: 126 NWIQVRGAGADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLGSPEEV 173

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
224109588	243	predicted protein [Populus trichocarpa]	0.754	0.633	0.702	3e-55
255582368	242	Thylakoid lumenal 25.6 kDa protein, chlo	0.769	0.648	0.643	7e-53
225449633	238	PREDICTED: putative oxygen evolving enha	0.735	0.630	0.675	2e-52
388493196	240	unknown [Lotus japonicus]	0.730	0.620	0.632	9e-47
449464194	236	PREDICTED: psbP-like protein 1, chloropl	0.705	0.610	0.583	1e-43
255626971	216	unknown [Glycine max]	0.725	0.685	0.611	1e-42
356568959	236	PREDICTED: uncharacterized protein LOC10	0.725	0.627	0.611	1e-42
15233245	230	PsbP-like protein 1 [Arabidopsis thalian	0.705	0.626	0.575	3e-41
297820294	229	photosystem II reaction center PsbP fami	0.676	0.602	0.597	1e-40
356499671	232	PREDICTED: psbP-like protein 1, chloropl	0.705	0.620	0.605	2e-40

>gi|224109588|ref|XP_002315246.1| predicted protein [Populus trichocarpa] gi|222864286|gb|EEF01417.1| predicted protein [Populus trichocarpa]

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 111/158 (70%), Positives = 132/158 (83%), Gaps = 4/158 (2%)

Query: 1   MASLQHSPSSSIHQTSFLNSLPQLG-VQKYGGVLPAVCRRGISLIVKAEHASMASSANSL 59
           MASLQ+SPS  ++ T    SLPQ+G  QK  G+L + CRRG+S +V+AE +S  S++ S 
Sbjct: 1   MASLQNSPS--VYHTLSPYSLPQVGGAQKNHGML-SFCRRGLSFLVRAEQSSPNSTSLSQ 57

Query: 60  DKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIE 119
            + GRR++IAV VIAPWVS+VNQTPPSFAAES KGFL VTDKKDGYSF+YPFGWQEV+IE
Sbjct: 58  VRFGRRELIAVSVIAPWVSMVNQTPPSFAAESKKGFLLVTDKKDGYSFLYPFGWQEVVIE 117

Query: 120 GQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVC 157
           GQDKVFKDVIEPLES+SVN+IPT KQDIRDFGPPQ+V 
Sbjct: 118 GQDKVFKDVIEPLESISVNVIPTVKQDIRDFGPPQQVA 155

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582368|ref|XP_002531973.1| Thylakoid lumenal 25.6 kDa protein, chloroplast precursor, putative [Ricinus communis] gi|223528370|gb|EEF30409.1| Thylakoid lumenal 25.6 kDa protein, chloroplast precursor, putative [Ricinus communis]

 Score =  212 bits (539), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 103/160 (64%), Positives = 125/160 (78%), Gaps = 3/160 (1%)

Query: 1   MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLD 60
           MASLQ+SPS     T   NS PQ+G+Q+Y    P  CR+GIS +V+AEH+    ++ S  
Sbjct: 1   MASLQNSPS--FCYTLSPNSFPQIGLQRYYDSFPC-CRKGISFVVRAEHSLPNLTSLSQV 57

Query: 61  KCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEG 120
           + GRRQ++AV ++APWVSLVNQT PSFAAE+ KGFL VTDKKDGYSF+YPFGWQEV IEG
Sbjct: 58  RPGRRQLVAVSLVAPWVSLVNQTSPSFAAETKKGFLLVTDKKDGYSFLYPFGWQEVFIEG 117

Query: 121 QDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVCSIF 160
           QDKVFKD+IEPLE+VSV  +PT KQDIRDFGPPQ+V  + 
Sbjct: 118 QDKVFKDIIEPLENVSVTTVPTSKQDIRDFGPPQQVAEVL 157

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449633|ref|XP_002284256.1| PREDICTED: putative oxygen evolving enhancer protein [Vitis vinifera] gi|296086290|emb|CBI31731.3| unnamed protein product [Vitis vinifera]

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 106/157 (67%), Positives = 124/157 (78%), Gaps = 7/157 (4%)

Query: 1   MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLD 60
           MASLQ+SP+  IH+T F NS  QLG+QK+G      CRRG+SL+V+AE  S   + N  D
Sbjct: 1   MASLQNSPA--IHRTLFPNSFSQLGLQKHGQF--RCCRRGVSLLVRAEQVS---TTNRED 53

Query: 61  KCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEG 120
             GRRQ++AVG I  WVSLVNQT  SFAAE+ KGFL+V DKKDGYSF+YPFGWQEV+I+G
Sbjct: 54  GPGRRQVLAVGAIGSWVSLVNQTSISFAAETKKGFLAVMDKKDGYSFLYPFGWQEVVIDG 113

Query: 121 QDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVC 157
           QDKVFKDVIEPLESVSVN+IPT KQDIR+ G PQEV 
Sbjct: 114 QDKVFKDVIEPLESVSVNMIPTVKQDIRELGSPQEVA 150

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493196|gb|AFK34664.1| unknown [Lotus japonicus]

 Score =  192 bits (487), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 100/158 (63%), Positives = 120/158 (75%), Gaps = 9/158 (5%)

Query: 1   MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSAN--S 58
           M SLQ+SP+  +H+T FLNS PQ    K+G    +  R GIS  VKA H   ASSA   S
Sbjct: 1   MVSLQNSPT--LHRTLFLNSFPQ----KHGASR-SPRREGISFTVKAAHEPSASSAGFPS 53

Query: 59  LDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVII 118
            D+ GRR++IA+G  AP V L +Q   SFAAE+ KGFL VTD+KDGY+F+YPFGWQEV I
Sbjct: 54  QDRPGRREVIAIGTTAPLVFLFSQNSSSFAAENKKGFLPVTDQKDGYTFIYPFGWQEVSI 113

Query: 119 EGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEV 156
           EGQDKVFKDVIEPLESVSVN+IPTGKQ+I++FGPPQ+V
Sbjct: 114 EGQDKVFKDVIEPLESVSVNIIPTGKQNIKEFGPPQQV 151

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464194|ref|XP_004149814.1| PREDICTED: psbP-like protein 1, chloroplastic-like [Cucumis sativus] gi|449519084|ref|XP_004166565.1| PREDICTED: psbP-like protein 1, chloroplastic-like [Cucumis sativus]

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 94/161 (58%), Positives = 115/161 (71%), Gaps = 17/161 (10%)

Query: 1   MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMAS----SA 56
           MASLQ+S         F+NSLPQ    K  G     CR G+S +V+AE A  +S    + 
Sbjct: 1   MASLQNSL--------FINSLPQ----KLHGRF-VCCRAGVSFLVRAEQAHGSSINGHAC 47

Query: 57  NSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEV 116
           +S D+ GRRQ+++      W+SL +    SFAAE+ KGFLSV+DKKDGYSFVYPFGWQEV
Sbjct: 48  SSEDRLGRRQLLSGSAFITWISLADMNSMSFAAETKKGFLSVSDKKDGYSFVYPFGWQEV 107

Query: 117 IIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVC 157
           +I+GQDKVFKDVIEPLE+VSVNLIPT K+DIRDFGPPQ+V 
Sbjct: 108 VIDGQDKVFKDVIEPLENVSVNLIPTSKEDIRDFGPPQQVA 148

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255626971|gb|ACU13830.1| unknown [Glycine max]

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 96/157 (61%), Positives = 110/157 (70%), Gaps = 9/157 (5%)

Query: 1   MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLD 60
           M SLQ+SP+  +H+T   NS PQ    +      +  R  IS IVKA     AS A S D
Sbjct: 1   MTSLQNSPT--LHRTMLHNSFPQKHATR------SSRRDAISFIVKAAQEPSASLA-SQD 51

Query: 61  KCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEG 120
           +  RRQ+IA G  AP V L NQ   SFAAE+ KGFL V DKKDGYSF+YPFGWQEV+IEG
Sbjct: 52  RQRRRQVIAFGTTAPLVFLFNQHSNSFAAENKKGFLPVLDKKDGYSFLYPFGWQEVVIEG 111

Query: 121 QDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVC 157
           QDKVFKDVIEPLE+VSVN+IPTGKQDI +FG PQEV 
Sbjct: 112 QDKVFKDVIEPLENVSVNVIPTGKQDITEFGSPQEVA 148

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568959|ref|XP_003552675.1| PREDICTED: uncharacterized protein LOC100305918 [Glycine max]

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 96/157 (61%), Positives = 110/157 (70%), Gaps = 9/157 (5%)

Query: 1   MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLD 60
           M SLQ+SP+  +H+T   NS PQ    +      +  R  IS IVKA     AS A S D
Sbjct: 1   MTSLQNSPT--LHRTMLHNSFPQKHATR------SSRRDAISFIVKAAQEPSASLA-SQD 51

Query: 61  KCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEG 120
           +  RRQ+IA G  AP V L NQ   SFAAE+ KGFL V DKKDGYSF+YPFGWQEV+IEG
Sbjct: 52  RQRRRQVIAFGTTAPLVFLFNQHSNSFAAENKKGFLPVLDKKDGYSFLYPFGWQEVVIEG 111

Query: 121 QDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVC 157
           QDKVFKDVIEPLE+VSVN+IPTGKQDI +FG PQEV 
Sbjct: 112 QDKVFKDVIEPLENVSVNVIPTGKQDITEFGSPQEVA 148

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15233245|ref|NP_191093.1| PsbP-like protein 1 [Arabidopsis thaliana] gi|9297075|sp|P82538.1|PPL1_ARATH RecName: Full=PsbP-like protein 1, chloroplastic; AltName: Full=OEC23-like protein 4; AltName: Full=PsbP-related thylakoid lumenal protein 2; Flags: Precursor gi|16930399|gb|AAL31885.1|AF419553_1 AT3g55330/T26I12_210 [Arabidopsis thaliana] gi|7019666|emb|CAB75767.1| putative protein [Arabidopsis thaliana] gi|20453231|gb|AAM19854.1| AT3g55330/T26I12_210 [Arabidopsis thaliana] gi|21593252|gb|AAM65201.1| unknown [Arabidopsis thaliana] gi|332645848|gb|AEE79369.1| PsbP-like protein 1 [Arabidopsis thaliana]

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 84/146 (57%), Positives = 114/146 (78%), Gaps = 2/146 (1%)

Query: 31  GVLPAVCRRGISLIVKAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAE 90
           GV+P+  ++G+S +VKAEH S +SS++  DKC RR ++  GV+APW+SL+++ P SFAAE
Sbjct: 18  GVIPS-SKKGLSFLVKAEHHSSSSSSHLQDKCQRRLIVTFGVVAPWISLLSRAPLSFAAE 76

Query: 91  SNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDF 150
           S KGFL+V+D KD Y+F+YPFGWQEV+IEGQDKV+KDVIEPLESVSVNL+PT KQ I++F
Sbjct: 77  SKKGFLAVSDNKDAYAFLYPFGWQEVVIEGQDKVYKDVIEPLESVSVNLVPTSKQTIKEF 136

Query: 151 GPPQEVCSIFSSAIFFIHN-KTEIYD 175
           GPP+++       +    N KT + D
Sbjct: 137 GPPKQIAETLIKKVLAPPNQKTTLID 162

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820294|ref|XP_002878030.1| photosystem II reaction center PsbP family protein [Arabidopsis lyrata subsp. lyrata] gi|297323868|gb|EFH54289.1| photosystem II reaction center PsbP family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 83/139 (59%), Positives = 109/139 (78%), Gaps = 1/139 (0%)

Query: 38  RRGISLIVKAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLS 97
           ++G+S +VKAEH S +SS++  DKC RR ++  GV+APW+SL+++ P SFAAES KGFL+
Sbjct: 23  KKGLSFLVKAEHHSSSSSSHLQDKCQRRLIVTFGVVAPWISLLSRAPLSFAAESKKGFLA 82

Query: 98  VTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVC 157
           V+D KD YSF+YPFGWQEV+IEGQDKV+KDVIEPLESVSVNLIPT KQ I++FGPP+++ 
Sbjct: 83  VSDNKDAYSFLYPFGWQEVVIEGQDKVYKDVIEPLESVSVNLIPTSKQTIKEFGPPKQIA 142

Query: 158 SIFSSAIFFIHN-KTEIYD 175
                 +    N KT + D
Sbjct: 143 ETLIKKVLAPPNQKTTLID 161

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499671|ref|XP_003518660.1| PREDICTED: psbP-like protein 1, chloroplastic-like [Glycine max]

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 95/157 (60%), Positives = 110/157 (70%), Gaps = 13/157 (8%)

Query: 1   MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLD 60
           M+ LQ+SP+  +H +SF    PQ  V +      +  R  IS IVKA     AS   S D
Sbjct: 1   MSLLQNSPT--LHNSSF----PQKHVTR------SSRRDAISFIVKAVQEPSAS-LTSQD 47

Query: 61  KCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEG 120
           +  RRQ+IAVG  AP V L NQ   SFAAE+ KGFL V DKKDGYSF+YPFGWQEV+IEG
Sbjct: 48  RQRRRQVIAVGTTAPLVFLFNQHSNSFAAENKKGFLPVLDKKDGYSFLYPFGWQEVVIEG 107

Query: 121 QDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVC 157
           QDKVFKDVIEPLE+VSVN+IPTGKQDI +FG PQEV 
Sbjct: 108 QDKVFKDVIEPLENVSVNVIPTGKQDITEFGSPQEVA 144

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
TAIR|locus:2100681	230	PPL1 "PsbP-like protein 1" [Ar	0.789	0.7	0.534	1e-43
TAIR|locus:2039727	238	PnsL1 "Photosynthetic NDH subc	0.612	0.525	0.343	2.8e-11
TAIR|locus:2130295	287	PPD1 "PsbP-Domain Protein1" [A	0.490	0.348	0.324	9.1e-05

TAIR|locus:2100681 PPL1 "PsbP-like protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 94/176 (53%), Positives = 128/176 (72%)

Query:     1 MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLD 60
             MASL+ SPSS I       S+ ++GV      +P+  ++G+S +VKAEH S +SS++  D
Sbjct:     1 MASLKLSPSSPI-------SISKVGV------IPS-SKKGLSFLVKAEHHSSSSSSHLQD 46

Query:    61 KCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEG 120
             KC RR ++  GV+APW+SL+++ P SFAAES KGFL+V+D KD Y+F+YPFGWQEV+IEG
Sbjct:    47 KCQRRLIVTFGVVAPWISLLSRAPLSFAAESKKGFLAVSDNKDAYAFLYPFGWQEVVIEG 106

Query:   121 QDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVCSIFSSAIFFIHN-KTEIYD 175
             QDKV+KDVIEPLESVSVNL+PT KQ I++FGPP+++       +    N KT + D
Sbjct:   107 QDKVYKDVIEPLESVSVNLVPTSKQTIKEFGPPKQIAETLIKKVLAPPNQKTTLID 162

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA;ISS

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TAIR|locus:2039727 PnsL1 "Photosynthetic NDH subcomplex L 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 46/134 (34%), Positives = 63/134 (47%)

Query:    46 KAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPS---FAAESNKGFLSVTDKK 102
             KA+ +       S +   RRQ + VGV     +LV  + P+    A E  K +    D++
Sbjct:    41 KADSSESTYQKGSGNNWKRRQAL-VGV----GTLVATSIPATLLLAEEIPKSYSPFVDRE 95

Query:   103 DGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVCSIFSS 162
             DGYS+ YP  W+E      D  FKD    L++V V  IPT K DI + GP +EV      
Sbjct:    96 DGYSYYYPSDWREFDFRAHDSAFKDRYLQLQNVRVRFIPTEKNDIHEVGPMEEVVYDLVK 155

Query:   163 AIFFIHNKTE-IYD 175
               F   N+   IYD
Sbjct:   156 HKFAAPNQVATIYD 169

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA;ISS

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2130295 PPD1 "PsbP-Domain Protein1" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 9.1e-05, P = 9.1e-05
 Identities = 35/108 (32%), Positives = 54/108 (50%)

Query:    54 SSANSLDKCGRRQMIAVGVIAPWVSLVNQT--PPSFAAESNKGFLSVTDKKDGYSFVYPF 111
             + A  +   GRR+ + +G++   + +V+Q   P +FA  S   F    D  DGYSF YP 
Sbjct:    69 TDAKQVCAVGRRKSMMMGLLMSGL-IVSQANLPTAFA--STPVFREYIDTFDGYSFKYPQ 125

Query:   112 GWQEVIIEGQDKVFKDVIEPLESVSVNLI-PTGKQ--DIRDFGPPQEV 156
              W +V   G D  F+D +   E++SV    P+      + D G P+EV
Sbjct:   126 NWIQVRGAGADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLGSPEEV 173


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.136   0.404    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      204       204   0.00094  111 3  11 22  0.47    32
                                                     31  0.46    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  587 (62 KB)
  Total size of DFA:  167 KB (2099 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.64u 0.17s 18.81t   Elapsed:  00:00:01
  Total cpu time:  18.64u 0.17s 18.81t   Elapsed:  00:00:01
  Start:  Sat May 11 09:47:36 2013   End:  Sat May 11 09:47:37 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009654 "oxygen evolving complex" evidence=ISS

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0048564 "photosystem I assembly" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P82538	PPL1_ARATH	No assigned EC number	0.5753	0.7058	0.6260	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	204
pfam01789	163	pfam01789, PsbP, PsbP	5e-26
PLN00059	286	PLN00059, PLN00059, PsbP domain-containing protein	2e-05
PLN00042	260	PLN00042, PLN00042, photosystem II oxygen-evolving	3e-05

>gnl|CDD|216701 pfam01789, PsbP, PsbP

 Score = 97.7 bits (244), Expect = 5e-26
 Identities = 33/73 (45%), Positives = 47/73 (64%), Gaps = 2/73 (2%)

Query: 86  SFAAESNKGFLSVTDKKDGYSFVYPFGW-QEVIIEGQDKVFKDVIEPLESVSVNLIPTGK 144
           +  A++N GF +  D  DGY F+YP GW +EV+ +G D VF D+IE  E+VSV + P  K
Sbjct: 1   ACKAKTNAGFQAYVDTDDGYEFLYPTGWWREVVSDGPDVVFHDLIESDENVSVVISPVDK 60

Query: 145 Q-DIRDFGPPQEV 156
           +  + D G P+EV
Sbjct: 61  KKSLEDLGSPEEV 73

This family consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria. The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+. Length = 163

>gnl|CDD|177690 PLN00059, PLN00059, PsbP domain-containing protein 1; Provisional

 Score = 44.0 bits (103), Expect = 2e-05
 Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 4/106 (3%)

Query: 54  SSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGW 113
           + A  +   GRR+ + +G++   + +V++     A  S   F    D  DGYSF YP  W
Sbjct: 69  TDAKQVCAVGRRKSMMMGLLMSGL-IVSEANLPTAFASIPVFREYIDTFDGYSFKYPQNW 127

Query: 114 QEVIIEGQDKVFKDVIEPLESVSVNL-IPTGKQ--DIRDFGPPQEV 156
            +V   G D  F+D +   E++SV    P+  +   + D G P+EV
Sbjct: 128 IQVRGAGADIFFRDPVVLDENLSVEFSSPSSSKYTSLEDLGSPEEV 173

Length = 286

>gnl|CDD|177676 PLN00042, PLN00042, photosystem II oxygen-evolving enhancer protein 2; Provisional

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 18/124 (14%)

Query: 46  KAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAA-----------ESNKG 94
           +       +         RR   A+ ++A   +   +  P+ AA           ++N G
Sbjct: 34  RPSQVVCRAQEEDNSAVSRR--AALALLAGAAAAGAKVSPANAAYGESANVFGKPKTNTG 91

Query: 95  FLSVTDKKDGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFG 151
           FL      DG+  + P  W   +E    GQ   F+D  +   ++SV + PT K+ I D+G
Sbjct: 92  FLPYNG--DGFKLLVPSKWNPSKEREFPGQVLRFEDNFDATSNLSVMVTPTDKKSITDYG 149

Query: 152 PPQE 155
            P+E
Sbjct: 150 SPEE 153

Length = 260

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	204
PLN00059	286	PsbP domain-containing protein 1; Provisional	99.97
PLN00042	260	photosystem II oxygen-evolving enhancer protein 2;	99.96
PF01789	175	PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynt	99.9
PLN00066	262	PsbP domain-containing protein 4; Provisional	99.86
PLN00067	263	PsbP domain-containing protein 6; Provisional	99.84
PLN03152	241	hypothetical protein; Provisional	98.87
PF12712	153	DUF3805: Domain of unknown function (DUF3805); Int	89.43

>PLN00059 PsbP domain-containing protein 1; Provisional

Probab=99.97  E-value=6.8e-31  Score=232.21  Aligned_cols=118  Identities=29%  Similarity=0.419  Sum_probs=101.4

Q ss_pred             cCccchHHHHHHHH--HHhhhhhcCCCCcccccccccCceeeeeCCCCeEEeecCCceeeeecCcceeecCCCCCCcceE
Q 028758           59 LDKCGRRQMIAVGV--IAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVS  136 (204)
Q Consensus        59 ~~~~~RR~aL~~~a--~Aa~~s~~~~a~~A~Ae~~~~Gf~~Y~D~~dGYsFlyP~gW~ev~~~G~dv~F~D~~~~~eNVS  136 (204)
                      ...++||++|+.++  +..+.+.++ .+.|+|+  +.||++|+|+.|||+|+||.||++|.+.|+|++|||+++++||||
T Consensus        74 ~~~~~rr~~~~~~l~~~~~~~s~~~-~~~a~a~--~~~l~~y~D~~DGY~FlYP~GWi~V~~~G~DVvFrD~Ie~~ENVS  150 (286)
T PLN00059         74 VCAVGRRKSMMMGLLMSGLIVSEAN-LPTAFAS--IPVFREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPVVLDENLS  150 (286)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHHhhc-CchhhcC--CcccceeEcCCCCeEEeCCCCCeEeccCCCceEEeccCccccceE
Confidence            35778999976544  334455443 4478887  448999999999999999999999999999999999999999999


Q ss_pred             EEEecCC---CCCcccCCCHHHHHHHHHhhhhcCC-----C---ceeeecchhh
Q 028758          137 VNLIPTG---KQDIRDFGPPQEVCSIFSSAIFFIH-----N---KTEIYDPFYA  179 (204)
Q Consensus       137 VvVsp~~---~~sI~dlGsPeeVae~L~kq~~a~p-----~---~a~Lida~~~  179 (204)
                      |+|+|++   +++|+|||+|+||||+|++++++++     |   +++||++..+
T Consensus       151 V~ISs~sss~~~sLeDLGsP~eVgerLlkqvLa~f~str~GsgReaeLVsA~~R  204 (286)
T PLN00059        151 VEFSSPSSSKYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKREANILSTSSR  204 (286)
T ss_pred             EEEecCCcccCCChHHcCCHHHHHHHHHHHHhcccccccCCCCcceEEEEeeeE
Confidence            9999875   8999999999999999999999974     3   9999999855

>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional

Probab=99.96  E-value=3.6e-30  Score=226.82  Aligned_cols=119  Identities=24%  Similarity=0.413  Sum_probs=105.5

Q ss_pred             cCccchHHHHHHHHHH-hhhhhcCCCCcccccc--------cccCceeeeeCCCCeEEeecCCcee---eeecCcceeec
Q 028758           59 LDKCGRRQMIAVGVIA-PWVSLVNQTPPSFAAE--------SNKGFLSVTDKKDGYSFVYPFGWQE---VIIEGQDKVFK  126 (204)
Q Consensus        59 ~~~~~RR~aL~~~a~A-a~~s~~~~a~~A~Ae~--------~~~Gf~~Y~D~~dGYsFlyP~gW~e---v~~~G~dv~F~  126 (204)
                      ...++||.+|+++++| +.++.++|+++||+|+        ..+||.+|  ++|||+|+||++|++   ++++|+|++|+
T Consensus        47 ~~~~srr~~l~~~~ga~a~~~~~~pa~aay~~~anvfg~~k~~~gF~~y--~~dgY~FlyP~~W~~~ke~~~~G~dv~f~  124 (260)
T PLN00042         47 NSAVSRRAALALLAGAAAAGAKVSPANAAYGESANVFGKPKTNTGFLPY--NGDGFKLLVPSKWNPSKEREFPGQVLRFE  124 (260)
T ss_pred             cccccHHHHHHHHHHHHHhhcccCchhhhhcchhhccCCCCCCCCCeEe--eCCCeEEecCCCCccccccccCCceEEee
Confidence            4568899999888875 6789999999999986        36999999  469999999999994   45679999999


Q ss_pred             CCCCCCcceEEEEecCCCCCcccCCCHHH----HHHHHHhhhhcCC---------C---ceeeecchhh
Q 028758          127 DVIEPLESVSVNLIPTGKQDIRDFGPPQE----VCSIFSSAIFFIH---------N---KTEIYDPFYA  179 (204)
Q Consensus       127 D~~~~~eNVSVvVsp~~~~sI~dlGsPee----Vae~L~kq~~a~p---------~---~a~Lida~~~  179 (204)
                      |+++++|||||+|+|+++++|+|||+|||    |+++|++|+++++         +   +++||++..+
T Consensus       125 D~~~~~eNVSV~Ispt~k~sI~dlGsPee~l~~vgylL~kq~~a~~t~s~~Gf~p~~vata~Lleas~r  193 (260)
T PLN00042        125 DNFDATSNLSVMVTPTDKKSITDYGSPEEFLSKVSYLLGKQAYSGETASEGGFDANAVATAAVLESSTQ  193 (260)
T ss_pred             ccccccccEEEEEecCCcCCHhhcCCHHHHHHHHHHHHHhhhccCccccccCcCcccccceeEEEeeeE
Confidence            99999999999999999999999999999    9999999999876         2   5789998655

>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=99.90  E-value=4.2e-24  Score=176.10  Aligned_cols=97  Identities=37%  Similarity=0.617  Sum_probs=82.0

Q ss_pred             CCcccccccccCceeeeeCCCCeEEeecCCceeeeecCcceeecCCCCCCcceEEEEecCCCC-CcccCCCHHHHHHHHH
Q 028758           83 TPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQ-DIRDFGPPQEVCSIFS  161 (204)
Q Consensus        83 a~~A~Ae~~~~Gf~~Y~D~~dGYsFlyP~gW~ev~~~G~dv~F~D~~~~~eNVSVvVsp~~~~-sI~dlGsPeeVae~L~  161 (204)
                      +..+.++...+||++|.|+++||+|.||.+|+++++.|+|++|+|+++.++||+|+|+|+.+. +|+|||+|+|||++|+
T Consensus        11 ~~~~~~~~~~~~~~~y~d~~~~y~f~~P~gW~~~~~~G~~v~f~d~~~~~~nvsV~v~p~~~~~sl~~lGs~~~va~~l~   90 (175)
T PF01789_consen   11 ANVACAAEASTGFQPYTDSDDGYSFLYPSGWEEVDVSGADVVFRDPIDADENVSVVVSPVPKDFSLEDLGSPEEVAERLL   90 (175)
T ss_dssp             -----STT--SSEEEEEECTTTEEEEEETTEEEEESTTEEEEEEETTETTSEEEEEEEE-STS-SGGGG-SHHHHHHHHH
T ss_pred             chhhhcccCCCCceEEEcCCCCEEEECCCCCeecCCCCeEEEEECcccccceEEEEEEecCCcCchhhcCCHHHHHHHHh
Confidence            334445667899999999999999999999999999999999999999999999999999855 9999999999999999


Q ss_pred             hhhhcCCC---ceeeecchhh
Q 028758          162 SAIFFIHN---KTEIYDPFYA  179 (204)
Q Consensus       162 kq~~a~p~---~a~Lida~~~  179 (204)
                      ++.+++++   +++||++..+
T Consensus        91 ~~~~~~~~~~~~a~li~a~~~  111 (175)
T PF01789_consen   91 NGELASPGSGREAELISASER  111 (175)
T ss_dssp             HHCCCHCTSSEEEEEEEEEEE
T ss_pred             hhhcccccCCcceEEEEeeee
Confidence            99998877   8899887654

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.

>PLN00066 PsbP domain-containing protein 4; Provisional

Probab=99.86  E-value=2.1e-21  Score=171.78  Aligned_cols=120  Identities=20%  Similarity=0.340  Sum_probs=98.2

Q ss_pred             cCccchHHHHHHHHHHhhhhhcCCCCccc--------------ccccccCceeeeeCCC-------------CeEEeecC
Q 028758           59 LDKCGRRQMIAVGVIAPWVSLVNQTPPSF--------------AAESNKGFLSVTDKKD-------------GYSFVYPF  111 (204)
Q Consensus        59 ~~~~~RR~aL~~~a~Aa~~s~~~~a~~A~--------------Ae~~~~Gf~~Y~D~~d-------------GYsFlyP~  111 (204)
                      ...++||.+|+.+++++..+.++.+..++              .|++..||++|..+..             .|+|+||.
T Consensus        42 ~~~~~rr~~~~s~~~~~~~~~~~~~~~~~a~~~g~~ag~~~~~s~~~~~g~~~~~rp~~~~Gg~G~~~~~i~~Y~F~yP~  121 (262)
T PLN00066         42 ATAVSRRSALASGAAAASSAVLAFPGEGLAVKQGLLAGRVPGLSEPDENGWRTYRRPEGKSGGHGVGWSEITPYSFKVPQ  121 (262)
T ss_pred             cchhhHHHHHHHHHHHHhhhhhcCCcchhhhhhcccccCCCCCCCccccceEEEecCccccCcCCCCccccCCeEEECCC
Confidence            45678999998776654443343333333              2556789999998876             49999999


Q ss_pred             Cceeeeec-----CcceeecCCCCCCcceEEEEecC--------CCCCcccCCCHHHHHHHHHhhhhcCCC-ceeeecch
Q 028758          112 GWQEVIIE-----GQDKVFKDVIEPLESVSVNLIPT--------GKQDIRDFGPPQEVCSIFSSAIFFIHN-KTEIYDPF  177 (204)
Q Consensus       112 gW~ev~~~-----G~dv~F~D~~~~~eNVSVvVsp~--------~~~sI~dlGsPeeVae~L~kq~~a~p~-~a~Lida~  177 (204)
                      ||.|+.++     |+++.||+.++.++||+|+|+|+        ++++|+|||+||+|++.|++++++++. +++|+++.
T Consensus       122 GW~ev~VS~~d~gg~~vd~Rf~~~~~~nvsVvVspv~rla~~~~~~~sI~dLGspeeVi~~l~~~v~g~~~~e~eLl~a~  201 (262)
T PLN00066        122 GWEEVPVSIADLGGTEIDLRFASDKEGRLKVVVAPVLRFADNLGDNATIEEIGPPEKVISGFGPELIGEPVEEGKVLSME  201 (262)
T ss_pred             CCeEeecccccCCCCceEEEeccCCCccEEEEEeccccccccccCCCChHHcCCHHHHHHHHHHHhcCCCccccceeEee
Confidence            99999887     66777777778999999999997        589999999999999999999999988 99999986


Q ss_pred             h
Q 028758          178 Y  178 (204)
Q Consensus       178 ~  178 (204)
                      .
T Consensus       202 ~  202 (262)
T PLN00066        202 V  202 (262)
T ss_pred             e
Confidence            5

>PLN00067 PsbP domain-containing protein 6; Provisional

Probab=99.84  E-value=9.9e-21  Score=167.16  Aligned_cols=121  Identities=18%  Similarity=0.311  Sum_probs=92.5

Q ss_pred             cCccCccchHHHHHHHHHHhhhhhcCCCCcccc-c----------ccccCceeeeeC-----------CCCeEEeecCCc
Q 028758           56 ANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFA-A----------ESNKGFLSVTDK-----------KDGYSFVYPFGW  113 (204)
Q Consensus        56 s~~~~~~~RR~aL~~~a~Aa~~s~~~~a~~A~A-e----------~~~~Gf~~Y~D~-----------~dGYsFlyP~gW  113 (204)
                      ++....+.||+.|..++.+.+.+.+... ++.| |          +...||.-|.-.           -.||+|+||.||
T Consensus        37 ~~~~~~~~rr~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~lp~~~~~~~~~~f~~~~~~tpalra~~i~gY~FlyP~gW  115 (263)
T PLN00067         37 PRAAVVIHRRELLLGLALAPLILIAPEP-PAEAREVEVGSYLPPSPSDPSFVLFKASPKDTPALRAGNVQPYQFILPPTW  115 (263)
T ss_pred             ccccchhHHHHHHhhhhhhhhhhccCCc-hhhhheehhhcccCCCCCCCceEEEecCCCCCcccccCCcccceEeCCCCC
Confidence            3455567899998766655544443222 3333 2          224577777532           238999999999


Q ss_pred             eeeeec----C-----------cceeecCCCCCCcceEEEEecC------CCCCcccCCCHHHHHHHHHhhhhcCCC-ce
Q 028758          114 QEVIIE----G-----------QDKVFKDVIEPLESVSVNLIPT------GKQDIRDFGPPQEVCSIFSSAIFFIHN-KT  171 (204)
Q Consensus       114 ~ev~~~----G-----------~dv~F~D~~~~~eNVSVvVsp~------~~~sI~dlGsPeeVae~L~kq~~a~p~-~a  171 (204)
                      ++++++    |           +|++|+|++  ++||+|+|+|+      ++++|+|||+||||+++|++.++++++ ++
T Consensus       116 ~~v~Vs~~~sGnycqp~c~~p~~dv~F~D~~--dgnVSVIVSPV~r~t~k~~~sIeDlGsPeeVl~~Lg~~v~g~~~~~~  193 (263)
T PLN00067        116 KQTRVANILSGNYCQPKCAEPWVEVKFEDEK--QGKVQVVASPLIRLTNKPNATIEEIGSPEKLIASLGPFVTGNSYDPD  193 (263)
T ss_pred             cCccccccccCccccccccCCCceEEEeCCC--CCCEEEEEecccccccCCCCChHHccCHHHHHHHhhHHhhcCCCCCc
Confidence            998886    4           899999955  78999999997      468999999999999999999999888 89


Q ss_pred             eeecchhh
Q 028758          172 EIYDPFYA  179 (204)
Q Consensus       172 ~Lida~~~  179 (204)
                      +||++..+
T Consensus       194 eLLeAs~r  201 (263)
T PLN00067        194 ELLETSVE  201 (263)
T ss_pred             ceEEeeeE
Confidence            99998755

>PLN03152 hypothetical protein; Provisional

Probab=98.87  E-value=3.2e-09  Score=92.96  Aligned_cols=99  Identities=28%  Similarity=0.415  Sum_probs=68.7

Q ss_pred             CccchHHHHHHHHHHhhhh--hcCCCCccccccc------------ccCceeeeeCCCCeEEeecCCceeee----ec-C
Q 028758           60 DKCGRRQMIAVGVIAPWVS--LVNQTPPSFAAES------------NKGFLSVTDKKDGYSFVYPFGWQEVI----IE-G  120 (204)
Q Consensus        60 ~~~~RR~aL~~~a~Aa~~s--~~~~a~~A~Ae~~------------~~Gf~~Y~D~~dGYsFlyP~gW~ev~----~~-G  120 (204)
                      +...||+.+.-.++++..+  .-.+...++|+..            .+.|-.|  .++||+.-||-+++.+-    +. |
T Consensus        29 ~~~~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nt~~w~~~--~g~gf~~~~pp~f~di~e~~~~~~g  106 (241)
T PLN03152         29 CGASRRDFILHTASLCASSLAAQNPLPPSLADPSKPSKPLLSGIANTKSWFQF--YGDGFSIRVPPSFEDIMEPEDYNAG  106 (241)
T ss_pred             ccccccceeeehhHHHHhhhhcCCCCCccccCCCCCCCchheeeecchhhhhh--hCCceEEeCCCChhhhcChhhcccc
Confidence            3556888875444444333  3333445666532            3456667  59999999999998532    11 2


Q ss_pred             ------------cceeecCCCCCCcceEEEEecC--------CCCCcccCCCHHHHHHHHH
Q 028758          121 ------------QDKVFKDVIEPLESVSVNLIPT--------GKQDIRDFGPPQEVCSIFS  161 (204)
Q Consensus       121 ------------~dv~F~D~~~~~eNVSVvVsp~--------~~~sI~dlGsPeeVae~L~  161 (204)
                                  -.++|..+ |.+|||||+|+|+        +.++|+|||+|+|||+.|+
T Consensus       107 ~~~yg~~akp~~~~aRf~s~-D~sEnVSVVIspv~~LK~tfle~kDLtDLGsp~EVgkv~v  166 (241)
T PLN03152        107 LSLYGDKAKPRTFAARFASP-DGSEVLSVVIRPSNQLKITFLEAKDITDLGSLKEAAKIFV  166 (241)
T ss_pred             cceecCCCCCcceeeeecCC-CCCceEEEEEecCccccccccccCChhHcCCHHHHHHhhC
Confidence                        13566665 7799999999997        5899999999999997776

>PF12712 DUF3805: Domain of unknown function (DUF3805); InterPro: IPR024315 This entry represents an N-terminal domain found in a family of bacterial proteins, whose function is unknown

Probab=89.43  E-value=0.52  Score=39.34  Aligned_cols=45  Identities=16%  Similarity=0.272  Sum_probs=26.6

Q ss_pred             eeeeeCCCCeEEeecCCceeeeecCc-ceeecCCCCCCcceEEEEec
Q 028758           96 LSVTDKKDGYSFVYPFGWQEVIIEGQ-DKVFKDVIEPLESVSVNLIP  141 (204)
Q Consensus        96 ~~Y~D~~dGYsFlyP~gW~ev~~~G~-dv~F~D~~~~~eNVSVvVsp  141 (204)
                      +.|..|+.=|+..||.+|.|.+ +|- ...|-|+..=+.|..+..-.
T Consensus         2 kKfiSpg~WFS~~YP~~W~EfE-D~E~sflFYnp~~WTGNfRISayk   47 (153)
T PF12712_consen    2 KKFISPGAWFSMEYPADWNEFE-DGEGSFLFYNPDQWTGNFRISAYK   47 (153)
T ss_dssp             EEEE-GGG-EEEEE-TT-EEE----TTEEEEE-SSS---EEEEEEEE
T ss_pred             CcccCCCceEEEecCCCcchhc-cCCcceEEEChHHhcCceEEEEEe
Confidence            5688888899999999999998 544 34578888889998866544

In two related Bacteroides species, the gene for members of this family lies immediately upstream from a putative ATP binding component of an ATP transporter and a putative histidinol phosphatase. The structure of this domain is strikingly similar to the N-terminal structure of 1tui, also of unknown function. The domain carries four conserved tryptophan residues.; PDB: 3HLZ_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	204
2xb3_A	165	The Structure Of Cyanobacterial Psbp Length = 165		6e-07
2lnj_A	170	Solution Structure Of Cyanobacterial Psbp (Cyanop)		2e-05

>pdb|2XB3|A Chain A, The Structure Of Cyanobacterial Psbp Length = 165

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 88  AAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQ-DKVFKDVIEPLESVS--VNLIPTGK 144
            + +  G  +  D  DGY F+YP GW +V +E   D VF D+IE  E+VS  VN + + K
Sbjct: 1   GSSATSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVASTK 60
Query: 145 QDIRDFGPPQEV 156
             + + G P+EV
Sbjct: 61  S-LEELGSPEEV 71

>pdb|2LNJ|A Chain A, Solution Structure Of Cyanobacterial Psbp (Cyanop) From Synechocystis Sp. Pcc 6803 Length = 170

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 99  TDKKDGYSFVYPFGWQEVIIEGQ----DKVFKDVIEPLESVSV--NLIPTGKQDIRDFGP 152
           +D KDGY F+YP GW  V ++G     D VF+D+IE  E++SV  + IP+ K  + D G 
Sbjct: 18  SDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKT-LTDLGT 76
Query: 153 PQEVCSIFSSAI 164
             +V   F   +
Sbjct: 77  ATDVGYRFMKTV 88

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	204
2vu4_A	273	Oxygen-evolving enhancer protein 2; kDa protein, t	7e-22
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	4e-17
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	5e-15
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	4e-13

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2 Length = 177

 Score = 74.5 bits (182), Expect = 4e-17
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 88  AAESNKGFLSVTDKKDGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGK 144
             +++  F +     DG+    P  W   +EV   GQ   F+D  +   +V V + PT K
Sbjct: 2   KPKTDTDFQTYNG--DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDK 59

Query: 145 QDIRDFGPPQEVCSIFSSAI 164
           + I DFG P++  S     +
Sbjct: 60  KSITDFGSPEQFLSQVDYLL 79

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus} Length = 165

 Score = 68.7 bits (167), Expect = 5e-15
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 88  AAESNKGFLSVTDKKDGYSFVYPFGWQEVIIE-GQDKVFKDVIEPLESVSVNLIP-TGKQ 145
            + +  G  +  D  DGY F+YP GW +V +E   D VF D+IE  E+VSV +      +
Sbjct: 1   GSSATSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVASTK 60

Query: 146 DIRDFGPPQEVCSIFSSAIF 165
            + + G P+EV       I 
Sbjct: 61  SLEELGSPEEVGDRLLRNII 80

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP} Length = 170

 Score = 63.7 bits (154), Expect = 4e-13
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 5/74 (6%)

Query: 88  AAESNKGFLSVTDKKDGYSFVYPFGWQEVIIE----GQDKVFKDVIEPLESVSVNLIPT- 142
                      +D KDGY F+YP GW  V ++    G D VF+D+IE  E++SV +    
Sbjct: 7   GGVGIASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIP 66

Query: 143 GKQDIRDFGPPQEV 156
             + + D G   +V
Sbjct: 67  SDKTLTDLGTATDV 80

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	204
d1v2ba_	171	d.107.1.2 (A:) Oxygen-evolving enhancer protein Ps	1e-14

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 66.6 bits (162), Expect = 1e-14
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 94  GFLSVTDKKDGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDF 150
            F +     DG+    P  W   +EV   GQ   F+D  +   +V V + PT K+ I DF
Sbjct: 2   DFQTYNG--DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDF 59

Query: 151 GPPQEV 156
           G P++ 
Sbjct: 60  GSPEQF 65

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	204
d1v2ba_	171	Oxygen-evolving enhancer protein PsbP {Common toba	99.78

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.78  E-value=1.6e-19  Score=128.51  Aligned_cols=85  Identities=25%  Similarity=0.409  Sum_probs=69.8

Q ss_pred             CCCEEEEECCCCEEEEECCCCEEEE---ECCCCEEECCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHH----HHH
Q ss_conf             6831456289985894018962441---238620111787887424999721998784457997999999876----453
Q 028758           93 KGFLSVTDKKDGYSFVYPFGWQEVI---IEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVCSIFSS----AIF  165 (204)
Q Consensus        93 ~Gf~~Y~D~~dGYsFlyP~gW~ev~---~~G~dv~F~D~~~~~eNVSVvVsp~~~~sI~dlGsPeeVae~L~~----q~~  165 (204)
                      ++|++|.|  |||+|+||++|+++.   ..|+|++|+|++++.+||+|+|+|+++++|++||+|+++++.++.    +++
T Consensus         1 ~~~~~y~~--dgy~f~~P~~W~~~~~~~~~g~d~~f~d~~~~~~nv~V~v~p~~~~sl~~~G~p~~~~~~v~~~l~~~~~   78 (171)
T d1v2ba_           1 TDFQTYNG--DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAY   78 (171)
T ss_dssp             CCEEEEEC--SSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHTGGGC-----
T ss_pred             CCCCCCCC--CCEEEECCCCCCEECCCCCCCCEEEEECCCCCCCEEEEEEECCCCCCHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             97531427--9879978889856034589981489866555775599999658876653405867888887888766453


Q ss_pred             CCC-----------C-CEEEECCHHH
Q ss_conf             379-----------8-3246520111
Q 028758          166 FIH-----------N-KTEIYDPFYA  179 (204)
Q Consensus       166 ~~p-----------~-~a~Lida~~~  179 (204)
                      .++           + +++|+++..+
T Consensus        79 ~~~~~~~~~~~~~~~~~a~v~~a~~~  104 (171)
T d1v2ba_          79 SGKTDSEGGFESDAVAIANVLETSTA  104 (171)
T ss_dssp             -------------CCCEEEEEEEEEE
T ss_pred             CCCCCCCCCCCCCCCCEEEEEEEEEE
T ss_conf             02233555555666430599983536