Citrus Sinensis ID: 028760

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200----
MSKEVNEEGQTHRHHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVCISSPP
ccHHcHHHccccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHEEEEEEccccccccccccEEccccc
ccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHcccc
mskevneegqthrhhhgkdyvdpppaplidmAELKLWSFYRALIAEFVATLLFLYVSVATVighkkqsdacggvGLLGIAWAFGGMIFVLVYCTagisgghinpaVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHeynslgggantvasgynkgsalgAEIIGTFVLVYTVFsatdpkrsardshvpvcisspp
mskevneegqthrhhhgkdyvdppPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSAtdpkrsardshvpvcisspp
MSKEVNEEGQTHRHHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVCISSPP
**************************PLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSA********************
**********************PPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVCISSPP
*****************KDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATD**********PVCISSPP
******************DYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPK*****SHVPVCISS**
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiRRRRRRRRRiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSKEVNEEGQTHRHHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVCISSPP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query204 2.2.26 [Sep-21-2011]
P93004280 Aquaporin PIP2-7 OS=Arabi yes no 0.980 0.714 0.852 9e-98
Q9ZVX8278 Probable aquaporin PIP2-8 no no 0.970 0.712 0.857 7e-96
P42767282 Aquaporin PIP-type OS=Atr N/A no 0.985 0.712 0.803 1e-92
Q7XLR1282 Probable aquaporin PIP2-6 yes no 0.980 0.709 0.780 9e-88
Q8H5N9290 Probable aquaporin PIP2-1 no no 0.985 0.693 0.736 1e-82
Q6K215288 Probable aquaporin PIP2-2 no no 0.995 0.704 0.706 1e-82
Q9ATM6288 Aquaporin PIP2-4 OS=Zea m N/A no 0.995 0.704 0.706 2e-82
Q9ATM4287 Aquaporin PIP2-7 OS=Zea m N/A no 0.990 0.703 0.709 1e-81
Q84RL7290 Aquaporin PIP2-1 OS=Zea m N/A no 0.985 0.693 0.732 1e-81
Q9XF58285 Aquaporin PIP2-5 OS=Zea m N/A no 0.975 0.698 0.706 3e-81
>sp|P93004|PIP27_ARATH Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2 Back     alignment and function desciption
 Score =  355 bits (912), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 173/203 (85%), Positives = 186/203 (91%), Gaps = 3/203 (1%)

Query: 1   MSKEVNEEGQTHRHHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVAT 60
           MSKEV+EEG+TH   HGKDYVDPPPAPL+DM ELK WSFYRALIAEF+ATLLFLYV+VAT
Sbjct: 1   MSKEVSEEGKTH---HGKDYVDPPPAPLLDMGELKSWSFYRALIAEFIATLLFLYVTVAT 57

Query: 61  VIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIR 120
           VIGHKKQ+  C GVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSL+R
Sbjct: 58  VIGHKKQTGPCDGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVR 117

Query: 121 AVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYT 180
           A+ YM+AQCLGAICGVG VKAFMK  YN+LGGGANTVA GY+KG+ALGAEIIGTFVLVYT
Sbjct: 118 ALGYMIAQCLGAICGVGFVKAFMKTPYNTLGGGANTVADGYSKGTALGAEIIGTFVLVYT 177

Query: 181 VFSATDPKRSARDSHVPVCISSP 203
           VFSATDPKRSARDSH+PV    P
Sbjct: 178 VFSATDPKRSARDSHIPVLAPLP 200
Water channel required to facilitate the transport of water across cell membrane. May be involved in the osmoregulation in plants under high osmotic stress such as under a high salt condition.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9ZVX8|PIP28_ARATH Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1 Back     alignment and function description
>sp|P42767|PIP1_ATRCA Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1 Back     alignment and function description
>sp|Q7XLR1|PIP26_ORYSJ Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2 Back     alignment and function description
>sp|Q8H5N9|PIP21_ORYSJ Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1 Back     alignment and function description
>sp|Q6K215|PIP22_ORYSJ Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1 Back     alignment and function description
>sp|Q9ATM6|PIP24_MAIZE Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1 Back     alignment and function description
>sp|Q9ATM4|PIP27_MAIZE Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1 Back     alignment and function description
>sp|Q84RL7|PIP21_MAIZE Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2 Back     alignment and function description
>sp|Q9XF58|PIP25_MAIZE Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query204
225428051279 PREDICTED: aquaporin PIP2-7 [Vitis vinif 0.975 0.713 0.876 1e-98
171190268278 aquaporin PIP2;3 [Gossypium hirsutum] 0.970 0.712 0.891 1e-98
171190270278 aquaporin PIP2;4 [Gossypium hirsutum] 0.970 0.712 0.891 2e-98
238814678281 plasma intrinsic protein 2;5 [Juglans re 0.985 0.715 0.876 2e-98
111379080279 putative aquaporin [Vitis vinifera] gi|1 0.975 0.713 0.871 2e-98
256568423278 PIP protein [Gossypium hirsutum] 0.970 0.712 0.881 2e-98
8071628279 putative aquaporin PIP2-2 [Vitis cinerea 0.975 0.713 0.871 3e-98
60498693281 plasma membrane intrinsic protein 2;5 [M 0.985 0.715 0.876 4e-98
395146531 694 putative aquaporin PIP2-8 [Linum usitati 0.990 0.291 0.871 8e-98
256568425278 PIP protein [Gossypium hirsutum] 0.970 0.712 0.876 2e-97
>gi|225428051|ref|XP_002279366.1| PREDICTED: aquaporin PIP2-7 [Vitis vinifera] gi|374341145|gb|AEZ35023.1| plasma membrane 2;2 aquaporin [Vitis vinifera] Back     alignment and taxonomy information
 Score =  364 bits (934), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 178/203 (87%), Positives = 192/203 (94%), Gaps = 4/203 (1%)

Query: 1   MSKEVNEEGQTHRHHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVAT 60
           MSKEV+EEGQ+H    GKDYVDPPPAPLID+AE+KLWSFYRA+IAEF+ATLLFLY++VAT
Sbjct: 1   MSKEVSEEGQSH----GKDYVDPPPAPLIDIAEIKLWSFYRAVIAEFIATLLFLYITVAT 56

Query: 61  VIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIR 120
           VIG+KKQSD CGGVGLLGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFLARKVSLIR
Sbjct: 57  VIGYKKQSDPCGGVGLLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIR 116

Query: 121 AVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYT 180
           A+AYMVAQCLGAICGVGLVKAFMK  YNSLGGGAN+VA+GYNKG+ALGAEIIGTFVLVYT
Sbjct: 117 ALAYMVAQCLGAICGVGLVKAFMKSFYNSLGGGANSVAAGYNKGTALGAEIIGTFVLVYT 176

Query: 181 VFSATDPKRSARDSHVPVCISSP 203
           VFSATDPKRSARDSHVPV    P
Sbjct: 177 VFSATDPKRSARDSHVPVLAPLP 199

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|171190268|gb|ACB42440.1| aquaporin PIP2;3 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|171190270|gb|ACB42441.1| aquaporin PIP2;4 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|238814678|gb|ACR56615.1| plasma intrinsic protein 2;5 [Juglans regia] Back     alignment and taxonomy information
>gi|111379080|gb|ABH09327.1| putative aquaporin [Vitis vinifera] gi|124702519|gb|ABN14351.1| aquaporin PIP2;2 [Vitis vinifera] gi|147816494|emb|CAN77349.1| hypothetical protein VITISV_007541 [Vitis vinifera] Back     alignment and taxonomy information
>gi|256568423|gb|ACU87555.1| PIP protein [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|8071628|gb|AAF71820.1|AF141900_1 putative aquaporin PIP2-2 [Vitis cinerea var. helleri x Vitis rupestris] Back     alignment and taxonomy information
>gi|60498693|dbj|BAD90701.1| plasma membrane intrinsic protein 2;5 [Mimosa pudica] Back     alignment and taxonomy information
>gi|395146531|gb|AFN53685.1| putative aquaporin PIP2-8 [Linum usitatissimum] Back     alignment and taxonomy information
>gi|256568425|gb|ACU87556.1| PIP protein [Gossypium hirsutum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query204
TAIR|locus:2131601280 PIP3 "plasma membrane intrinsi 0.980 0.714 0.852 5.7e-91
TAIR|locus:2039385278 PIP2;8 "plasma membrane intrin 0.970 0.712 0.857 7.5e-89
TAIR|locus:2175831291 PIP2;4 "plasma membrane intrin 0.960 0.673 0.728 4.5e-75
TAIR|locus:2084031287 PIP2A "plasma membrane intrins 0.985 0.700 0.722 5.7e-75
TAIR|locus:2061773285 PIP2B "plasma membrane intrins 0.911 0.652 0.760 3.1e-74
TAIR|locus:2061763285 RD28 "RESPONSIVE TO DESICCATIO 0.911 0.652 0.765 4e-74
TAIR|locus:2064885289 PIP2E "plasma membrane intrins 0.916 0.647 0.735 4.6e-73
TAIR|locus:2082642286 PIP2;5 "plasma membrane intrin 0.980 0.699 0.703 1.2e-72
TAIR|locus:2126026287 PIP1;4 "plasma membrane intrin 0.911 0.648 0.736 3.7e-71
TAIR|locus:2025391286 PIP1C "plasma membrane intrins 0.911 0.650 0.731 9.9e-71
TAIR|locus:2131601 PIP3 "plasma membrane intrinsic protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
 Identities = 173/203 (85%), Positives = 186/203 (91%)

Query:     1 MSKEVNEEGQTHRHHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVAT 60
             MSKEV+EEG+TH   HGKDYVDPPPAPL+DM ELK WSFYRALIAEF+ATLLFLYV+VAT
Sbjct:     1 MSKEVSEEGKTH---HGKDYVDPPPAPLLDMGELKSWSFYRALIAEFIATLLFLYVTVAT 57

Query:    61 VIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIR 120
             VIGHKKQ+  C GVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSL+R
Sbjct:    58 VIGHKKQTGPCDGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVR 117

Query:   121 AVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYT 180
             A+ YM+AQCLGAICGVG VKAFMK  YN+LGGGANTVA GY+KG+ALGAEIIGTFVLVYT
Sbjct:   118 ALGYMIAQCLGAICGVGFVKAFMKTPYNTLGGGANTVADGYSKGTALGAEIIGTFVLVYT 177

Query:   181 VFSATDPKRSARDSHVPVCISSP 203
             VFSATDPKRSARDSH+PV    P
Sbjct:   178 VFSATDPKRSARDSHIPVLAPLP 200
GO:0005215 "transporter activity" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM;IDA;TAS
GO:0006810 "transport" evidence=IEA;ISS
GO:0006833 "water transport" evidence=IEA
GO:0015250 "water channel activity" evidence=ISS;IDA
GO:0016020 "membrane" evidence=IEA;ISS;IDA
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0046658 "anchored to plasma membrane" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
GO:0005634 "nucleus" evidence=IDA
GO:0009737 "response to abscisic acid stimulus" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
TAIR|locus:2039385 PIP2;8 "plasma membrane intrinsic protein 2;8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175831 PIP2;4 "plasma membrane intrinsic protein 2;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084031 PIP2A "plasma membrane intrinsic protein 2A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061773 PIP2B "plasma membrane intrinsic protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061763 RD28 "RESPONSIVE TO DESICCATION 28" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2064885 PIP2E "plasma membrane intrinsic protein 2E" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082642 PIP2;5 "plasma membrane intrinsic protein 2;5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126026 PIP1;4 "plasma membrane intrinsic protein 1;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025391 PIP1C "plasma membrane intrinsic protein 1C" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P93004PIP27_ARATHNo assigned EC number0.85220.98030.7142yesno
Q84RL7PIP21_MAIZENo assigned EC number0.73200.98520.6931N/Ano
Q7XLR1PIP26_ORYSJNo assigned EC number0.78040.98030.7092yesno
Q08451PIP1_SOLLCNo assigned EC number0.71500.91170.6503N/Ano
P61838PIP11_VICFANo assigned EC number0.71500.91170.6503N/Ano
P42767PIP1_ATRCANo assigned EC number0.80390.98520.7127N/Ano
Q9ATN0PIP16_MAIZENo assigned EC number0.70050.91660.6317N/Ano
Q9XF58PIP25_MAIZENo assigned EC number0.70610.97540.6982N/Ano
Q9ATM4PIP27_MAIZENo assigned EC number0.70950.99010.7038N/Ano
Q9ATM6PIP24_MAIZENo assigned EC number0.70610.99500.7048N/Ano
Q9ATM7PIP23_MAIZENo assigned EC number0.70330.98520.6955N/Ano
Q9ATM8PIP22_MAIZENo assigned EC number0.71560.98520.6883N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query204
pfam00230218 pfam00230, MIP, Major intrinsic protein 6e-66
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 2e-48
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 3e-43
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 3e-28
PLN00027252 PLN00027, PLN00027, aquaporin TIP; Provisional 1e-23
PLN00166250 PLN00166, PLN00166, aquaporin TIP2; Provisional 6e-23
PLN00167256 PLN00167, PLN00167, aquaporin TIP5; Provisional 7e-18
PTZ00016294 PTZ00016, PTZ00016, aquaglyceroporin; Provisional 3e-17
PRK05420231 PRK05420, PRK05420, aquaporin Z; Provisional 1e-15
PLN00026298 PLN00026, PLN00026, aquaporin NIP; Provisional 1e-12
PLN00184296 PLN00184, PLN00184, aquaporin NIP1; Provisional 7e-12
PLN00182283 PLN00182, PLN00182, putative aquaporin NIP4; Provi 1e-08
PLN00183274 PLN00183, PLN00183, putative aquaporin NIP7; Provi 2e-08
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 5e-05
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 7e-05
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information 
 Score =  201 bits (514), Expect = 6e-66
 Identities = 84/165 (50%), Positives = 107/165 (64%), Gaps = 6/165 (3%)

Query: 33  ELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVY 92
           EL+  SF+RA+IAEF+ATLLF++  V + +G KK        GLL +A AFG  +F LVY
Sbjct: 1   ELRSVSFWRAVIAEFLATLLFVFFGVGSALGVKKLYG-----GLLAVALAFGLALFTLVY 55

Query: 93  CTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG 152
           CT  ISG H+NPAVTF L + R++SL+RA+ Y++AQ LGAICG  L+K          GG
Sbjct: 56  CTGHISGAHLNPAVTFALLVGRRISLLRAIYYIIAQLLGAICGAALLKGVTN-GLQRAGG 114

Query: 153 GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVP 197
            AN++A G N G A   EII TF LVYTVF+ TD  R+    HV 
Sbjct: 115 FANSLAPGVNAGQAFVVEIILTFQLVYTVFATTDDPRNGSLGHVA 159

MIP (Major Intrinsic Protein) family proteins exhibit essentially two distinct types of channel properties: (1) specific water transport by the aquaporins, and (2) small neutral solutes transport, such as glycerol by the glycerol facilitators. Length = 218
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional Back     alignment and domain information
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional Back     alignment and domain information
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional Back     alignment and domain information
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional Back     alignment and domain information
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional Back     alignment and domain information
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional Back     alignment and domain information
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional Back     alignment and domain information
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional Back     alignment and domain information
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 204
KOG0224 316 consensus Aquaporin (major intrinsic protein famil 100.0
KOG0223238 consensus Aquaporin (major intrinsic protein famil 100.0
COG0580241 GlpF Glycerol uptake facilitator and related perme 100.0
PTZ00016294 aquaglyceroporin; Provisional 100.0
PLN00184296 aquaporin NIP1; Provisional 100.0
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 100.0
PLN00182283 putative aquaporin NIP4; Provisional 99.97
PLN00167256 aquaporin TIP5; Provisional 99.97
PLN00026298 aquaporin NIP; Provisional 99.97
PRK05420231 aquaporin Z; Provisional 99.97
PLN00166250 aquaporin TIP2; Provisional 99.97
PLN00027252 aquaporin TIP; Provisional 99.96
PLN00183274 putative aquaporin NIP7; Provisional 99.96
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.96
TIGR00861216 MIP MIP family channel proteins. processes. Some m 99.95
PLN00182283 putative aquaporin NIP4; Provisional 99.67
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.66
PLN00026298 aquaporin NIP; Provisional 99.63
PLN00183274 putative aquaporin NIP7; Provisional 99.63
TIGR00861216 MIP MIP family channel proteins. processes. Some m 99.58
KOG0223238 consensus Aquaporin (major intrinsic protein famil 99.47
PLN00184296 aquaporin NIP1; Provisional 99.46
PLN00166250 aquaporin TIP2; Provisional 99.41
PLN00027252 aquaporin TIP; Provisional 99.37
PRK05420231 aquaporin Z; Provisional 99.35
PTZ00016294 aquaglyceroporin; Provisional 99.31
PLN00167256 aquaporin TIP5; Provisional 99.27
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 99.2
COG0580241 GlpF Glycerol uptake facilitator and related perme 99.16
KOG0224316 consensus Aquaporin (major intrinsic protein famil 97.55
PRK10805285 formate transporter; Provisional 84.26
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=7.4e-36  Score=249.42  Aligned_cols=159  Identities=25%  Similarity=0.418  Sum_probs=139.2

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCcchhHHHHHHHHHHHHHHHHhcCCCccccchHhHHHHHHhc
Q 028760           35 KLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLAR  114 (204)
Q Consensus        35 ~~~~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~~i~~~~~iSGah~NPavTla~~~~g  114 (204)
                      ...++.|++++||+||++|++++++++.....+..  ....++.+.++||+++++.+|+.+.+||||+|||||+++++.|
T Consensus        27 i~~~l~Re~LAEFlGT~vL~~~G~g~v~Q~vls~g--~~g~~~~vnlgwg~av~~gVyvag~iSGgHlNPAVS~a~~~~g  104 (316)
T KOG0224|consen   27 IRNELLREFLAEFLGTFVLVVFGLGSVAQAVLSGG--TGGSFIGVNLGWGFAVMMGVYVAGRISGGHLNPAVSLAMCILG  104 (316)
T ss_pred             HHHHHHHHHHHHHHhHHHHHhhccceeEEEEeccC--CCCceEEEEehHhHHHHHHHHhhccccccccCHHHHHHHHHhc
Confidence            45668999999999999999999998776655432  2446788899999999999999999999999999999999999


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCc--------------cccCCCCchHHHHHHHHHHHHHHHHH
Q 028760          115 KVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGA--------------NTVASGYNKGSALGAEIIGTFVLVYT  180 (204)
Q Consensus       115 ~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~--------------~~~~~~~s~~~~f~~E~v~Tf~Lv~~  180 (204)
                      |++|.|.++|+++|++||++|++.+|.+|++.++.+.++.              +-|.+..+++++|+.|+++|.+|+++
T Consensus       105 ~~p~~k~p~Y~~aQ~iGAF~gaa~~y~~y~d~i~~f~Gg~~~vtgp~aTAgiFaTyP~p~ls~~n~F~DqfigTa~L~~~  184 (316)
T KOG0224|consen  105 RLPWKKFPVYVLAQFIGAFLGAATVYGLYYDAINEFDGGNRTVTGPKATAGIFATYPAPHLSLWNGFFDQFIGTAMLVLC  184 (316)
T ss_pred             CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEecCCccceEEEeecCchHhhhhHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999888765442              22567789999999999999999999


Q ss_pred             HHHhccCCCCCCCCC
Q 028760          181 VFSATDPKRSARDSH  195 (204)
Q Consensus       181 i~~~~d~~~~~~~~~  195 (204)
                      +++++|+||......
T Consensus       185 l~aI~D~rN~~p~g~  199 (316)
T KOG0224|consen  185 LFAITDKRNPIPTGL  199 (316)
T ss_pred             eeEEecCCCCCCcch
Confidence            999999999544433

>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10805 formate transporter; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query204
2b5f_A 303 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-95
1z98_A281 Crystal Structure Of The Spinach Aquaporin Sopip2;1 2e-95
3cn6_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 2e-95
3cll_A300 Crystal Structure Of The Spinach Aquaporin Sopip2;1 5e-95
3cn5_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 7e-95
1fqy_A269 Structure Of Aquaporin-1 At 3.8 A Resolution By Ele 2e-25
1j4n_A271 Crystal Structure Of The Aqp1 Water Channel Length 3e-25
3iyz_A 340 Structure Of Aquaporin-4 S180d Mutant At 10.0 A Res 2e-22
2d57_A 301 Double Layered 2d Crystal Structure Of Aquaporin-4 3e-22
2zz9_A 301 Structure Of Aquaporin-4 S180d Mutant At 2.8 A Reso 3e-22
3gd8_A223 Crystal Structure Of Human Aquaporin 4 At 1.8 And I 4e-20
2b6o_A263 Electron Crystallographic Structure Of Lens Aquapor 1e-18
1ymg_A263 The Channel Architecture Of Aquaporin O At 2.2 Angs 1e-18
1sor_A235 Aquaporin-0 Membrane Junctions Reveal The Structure 5e-17
3m9i_A220 Electron Crystallographic Structure Of Lens Aquapor 7e-17
3d9s_A266 Human Aquaporin 5 (Aqp5) - High Resolution X-Ray St 2e-16
2evu_A246 Crystal Structure Of Aquaporin Aqpm At 2.3a Resolut 2e-08
2w1p_A279 1.4 Angstrom Crystal Structure Of P.Pastoris Aquapo 3e-08
1fx8_A 281 Crystal Structure Of The E. Coli Glycerol Facilitat 1e-07
1ldf_A 281 Crystal Structure Of The E. Coli Glycerol Facilitat 2e-07
2o9d_A234 Crystal Structure Of Aqpz Mutant T183c. Length = 23 3e-07
2o9f_A234 Crystal Structure Of Aqpz Mutant L170c Length = 234 3e-07
2o9e_A234 Crystal Structure Of Aqpz Mutant T183c Complexed Wi 4e-07
1rc2_B231 2.5 Angstrom Resolution X-Ray Structure Of Aquapori 4e-07
3ne2_A246 Archaeoglobus Fulgidus Aquaporin Length = 246 4e-07
3nka_A234 Crystal Structure Of Aqpz H174g,T183f Length = 234 4e-07
3nk5_A234 Crystal Structure Of Aqpz Mutant F43w Length = 234 1e-06
3nkc_A234 Crystal Structure Of Aqpz F43w,H174g,T183f Length = 2e-06
3llq_A256 Aquaporin Structure From Plant Pathogen Agrobacteri 2e-06
3c02_A258 X-Ray Structure Of The Aquaglyceroporin From Plasmo 5e-04
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An Open Conformation To 3.9 Resolution Length = 303 Back     alignment and structure 
Iteration: 1

 Score =  345 bits (885), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 166/203 (81%), Positives = 181/203 (89%), Gaps = 2/203 (0%)
Query: 1   MSKEVNEEGQTHRHHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVAT 60
           MSKEV+EE Q H+H  GKDYVDPPPAP  D+ ELKLWSF+RA IAEF+ATLLFLY++VAT
Sbjct: 1   MSKEVSEEAQAHQH--GKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVAT 58
Query: 61  VIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIR 120
           VIGH K++  CG VGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSL+R
Sbjct: 59  VIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLR 118
Query: 121 AVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYT 180
           A+ YM+AQCLGAICGVGLVKAFMK  YN  GGGAN+VA GYNKG+ALGAEIIGTFVLVYT
Sbjct: 119 ALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYT 178
Query: 181 VFSATDPKRSARDSHVPVCISSP 203
           VFSATDPKRSARDSHVP+    P
Sbjct: 179 VFSATDPKRSARDSHVPILAPLP 201
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A Closed Conformation Length = 281 Back     alignment and structure
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e Mutant Length = 304 Back     alignment and structure
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e Mutant Length = 300 Back     alignment and structure
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e, S274e Mutant Length = 304 Back     alignment and structure
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron Crystallography Length = 269 Back     alignment and structure
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel Length = 271 Back     alignment and structure
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution From Electron Micrograph Length = 340 Back     alignment and structure
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4 (Aqp4m23) At 3.2 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its Mechanism Of Conductance Length = 223 Back     alignment and structure
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore State Length = 263 Back     alignment and structure
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom Resolution Length = 263 Back     alignment and structure
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A Closed Water Pore Length = 235 Back     alignment and structure
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp Mip) In E. Coli Polar Lipids Length = 220 Back     alignment and structure
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure Length = 266 Back     alignment and structure
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution Length = 246 Back     alignment and structure
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin, Aqy1, In A Closed Conformation At Ph 8.0 Length = 279 Back     alignment and structure
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) With Substrate Glycerol Length = 281 Back     alignment and structure
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) Mutation W48f, F200t Length = 281 Back     alignment and structure
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c. Length = 234 Back     alignment and structure
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c Length = 234 Back     alignment and structure
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With Mercury Length = 234 Back     alignment and structure
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z Length = 231 Back     alignment and structure
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin Length = 246 Back     alignment and structure
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f Length = 234 Back     alignment and structure
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w Length = 234 Back     alignment and structure
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f Length = 234 Back     alignment and structure
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium Tumerfaciens Length = 256 Back     alignment and structure
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium Falciparum Length = 258 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query204
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 2e-94
3iyz_A 340 Aquaporin-4; water transport, water channel, two-d 6e-77
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 1e-04
2zz9_A 301 Aquaporin-4; water transport, water channel, two-d 3e-72
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 1e-04
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 2e-70
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 5e-05
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 8e-69
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 1e-68
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 3e-04
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 1e-68
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 1e-67
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 4e-04
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 7e-67
2o9g_A234 Aquaporin Z; integral membrane protein, structural 5e-65
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 4e-50
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 3e-04
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 5e-33
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 6e-06
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 2e-30
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 3e-04
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
 Score =  276 bits (708), Expect = 2e-94
 Identities = 163/198 (82%), Positives = 178/198 (89%), Gaps = 2/198 (1%)

Query: 1   MSKEVNEEGQTHRHHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVAT 60
           MSKEV+EE Q H+H   KDYVDPPPAP  D+ ELKLWSF+RA IAEF+ATLLFLY++VAT
Sbjct: 24  MSKEVSEEAQAHQHG--KDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVAT 81

Query: 61  VIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIR 120
           VIGH K++  CG VGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV L+R
Sbjct: 82  VIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLR 141

Query: 121 AVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYT 180
           A+ YM+AQCLGAICGVGLVKAFMK  YN  GGGAN+VA GYNKG+ALGAEIIGTFVLVYT
Sbjct: 142 ALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYT 201

Query: 181 VFSATDPKRSARDSHVPV 198
           VFSATDPKRSARDSHVP+
Sbjct: 202 VFSATDPKRSARDSHVPI 219
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 204
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 3e-38
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 1e-05
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 5e-34
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 5e-04
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 1e-25
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 1e-05
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 2e-23
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 3e-04
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  130 bits (327), Expect = 3e-38
 Identities = 61/173 (35%), Positives = 95/173 (54%), Gaps = 5/173 (2%)

Query: 32  AELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDA----CGGVGLLGIAWAFGGMI 87
           +E K   F+RA++AEF+A +LF+++S+ + +G      +          + ++ AFG  I
Sbjct: 3   SEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSI 62

Query: 88  FVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEY 147
             L      ISG H+NPAVT GL L+ ++S++RA+ Y++AQC+GAI    ++        
Sbjct: 63  ATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLP 122

Query: 148 NSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVCI 200
           ++   G N +A G N G  LG EIIGT  LV  V + TD +R       P+ I
Sbjct: 123 DN-SLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSGPLAI 174
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query204
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 100.0
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 100.0
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 99.76
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.71
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 99.68
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 99.63
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-0
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.6e-42  Score=211.00  Aligned_cols=151  Identities=34%  Similarity=0.541  Sum_probs=131.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             89999999999999999999889853244566888885246899999999999999835887555541868999982255
Q 028760           37 WSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV  116 (204)
Q Consensus        37 ~~~~~~~~~EfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~isGahlNPavTla~~~~g~~  116 (204)
                      .++||++++||+||++++|+++++.......     ..+.+.+++++|+.++..+++++++||+|+|||||+++++.|++
T Consensus         2 ~s~~r~~laEf~GT~~lvf~g~gs~~~~~~~-----~~~~~~ial~~G~~v~~~i~~~g~iSGaH~NPAVTla~~~~g~i   76 (234)
T d1ymga1           2 ASFWRAICAEFFASLFYVFFGLGASLRWAPG-----PLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQM   76 (234)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHCSCC-C-----HHHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-----CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC
T ss_conf             7799999999999999999999999515788-----75329999999999999999984456671581366999860478


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             31268999888887787998999997301222128985435888864899999999999999999876169998999
Q 028760          117 SLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARD  193 (204)
Q Consensus       117 ~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~f~~E~i~Tf~l~~~il~~~~~~~~~~~  193 (204)
                      +|.+.+.|+++|++|+++|+++++.++++..... .....+.++.+..++++.|++.|++|+++++.+.|+++....
T Consensus        77 ~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~E~~~t~~lv~~i~~~~~~~~~~~~  152 (234)
T d1ymga1          77 SLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGN-LALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRL  152 (234)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCTT-TTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCSCC
T ss_pred             CHHHEEEEEEHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCC
T ss_conf             7455454546677899999999998718510035-554446764103689999999999998821156548766767
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure