Citrus Sinensis ID: 028779

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200----
Protein Sequence
MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSFI
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEccHHHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHcccEEcccHHHHHHHHHccccccccccccccEEEccccccHHHHHHHHHHccccEEEEcccccccccccccccccccccccccEEccccccEEEEEcccccccccccccEEEEEEccccHHHHcccHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHcccccccEEEEEccHHHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHcccEEEccccHHHHHHHcccccccccHHHHHHHHHccccccHHHHHHHHHHccccEEEEEccccccccEEEEccccccccccccccEEcccEEEEEEccccccccccccccEEEEEccHHcccccccHHHHHHHHcccccEEEcc
Coil and Loop (DISEMBL)
mvtmdqetageLDYVFLCVLPLFHVFGLAvitcgqlqkgsciILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKhglvkkfdlsslklvgsgaaplGKELMEECaknvpsatviqgygltetsgiatmensfagsrnigsagalaPGVEALIVSvdtqkplppnqlgeiwlrgpnMMRGIMLIASIILSSWGFRKIMHSFI
Flexible Loop (DISEMBL)
mvtmdqetAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVdtqkplppnqLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSFI
Low Complexity Region (SEG)
MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSFI
Disordered region (IsUnstruct)
**********ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMH***
Disordered Region (DISOPRED)
********AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSFI
Disordered Region (DISEMBL)
********AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSFI
Disordered Region (DISPRO)
**TMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSFI
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSFI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	204	2.2.26 [Sep-21-2011]
Q9M0X9	544	4-coumarate--CoA ligase-l	yes	no	0.901	0.338	0.657	6e-70
Q0DV32	552	4-coumarate--CoA ligase-l	yes	no	0.892	0.329	0.562	7e-57
Q10S72	552	4-coumarate--CoA ligase-l	no	no	0.867	0.320	0.402	6e-35
Q84P23	562	4-coumarate--CoA ligase-l	no	no	0.828	0.300	0.441	1e-34
P0C5B6	550	4-coumarate--CoA ligase-l	no	no	0.833	0.309	0.406	4e-34
Q84P21	546	4-coumarate--CoA ligase-l	no	no	0.818	0.305	0.408	5e-34
P31687	562	4-coumarate--CoA ligase 2	no	no	0.833	0.302	0.456	7e-34
P31684	545	4-coumarate--CoA ligase 1	N/A	no	0.843	0.315	0.44	8e-33
P14913	544	4-coumarate--CoA ligase 1	N/A	no	0.833	0.312	0.427	8e-33
P14912	544	4-coumarate--CoA ligase 1	N/A	no	0.833	0.312	0.427	9e-33

>sp|Q9M0X9|4CLL7_ARATH 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana GN=4CLL7 PE=1 SV=1

 Score =  263 bits (672), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 121/184 (65%), Positives = 150/184 (81%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           MVTMDQ+  GE   VFLC LP+FHVFGLAVIT  QLQ+G+ ++ MA+F+LE+ L+ IEK 
Sbjct: 221 MVTMDQDLMGEYHGVFLCFLPMFHVFGLAVITYSQLQRGNALVSMARFELELVLKNIEKF 280

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           RVTH+WVVPP+ LAL+K  +VKKFDLSSLK +GSGAAPLGK+LMEEC +N+P+  ++QGY
Sbjct: 281 RVTHLWVVPPVFLALSKQSIVKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQGY 340

Query: 121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           G+TET GI ++E+   G RN GSAG LAPGVEA IVSV+T K  PPNQ GEIW+RGPNMM
Sbjct: 341 GMTETCGIVSVEDPRLGKRNSGSAGMLAPGVEAQIVSVETGKSQPPNQQGEIWVRGPNMM 400

Query: 181 RGIM 184
           +G +
Sbjct: 401 KGYL 404

Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: -

>sp|Q0DV32|4CLL1_ORYSJ 4-coumarate--CoA ligase-like 1 OS=Oryza sativa subsp. japonica GN=4CLL1 PE=2 SV=2

 Score =  219 bits (559), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 103/183 (56%), Positives = 136/183 (74%), Gaps = 1/183 (0%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           MVT DQ+   E   VFLC LP+FH+FGL+VIT  QL +G+ II M++FD+   + A+++H
Sbjct: 228 MVTSDQDERREGPNVFLCFLPMFHIFGLSVITYAQLHRGNAIIAMSRFDINSLMEAVQRH 287

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           RVTH++ VPP+I+ALAKHG   K+DLSSLK +GSGAAPLGK++ME  AK  P + ++QGY
Sbjct: 288 RVTHLFCVPPVIIALAKHGKAGKYDLSSLKFIGSGAAPLGKDVMEVVAKKFPDSEIVQGY 347

Query: 121 GLTETSGIATMENSFAG-SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNM 179
           G+TET GI ++E    G +R  GS G L  GVEA IV + T K LPPNQ+GEI +RGPN+
Sbjct: 348 GMTETCGIISLEYPEKGQAREFGSTGTLVSGVEAKIVDIKTLKHLPPNQVGEICVRGPNV 407

Query: 180 MRG 182
           M+G
Sbjct: 408 MQG 410

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q10S72|4CLL4_ORYSJ 4-coumarate--CoA ligase-like 4 OS=Oryza sativa subsp. japonica GN=4CLL4 PE=2 SV=1

 Score =  147 bits (370), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 72/179 (40%), Positives = 111/179 (62%), Gaps = 2/179 (1%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
            FLC +P+FHV+GL     G L  G+ +++++K++L   LR+I  + VT++ +VPP+++A
Sbjct: 245 TFLCTVPMFHVYGLVAFATGLLGCGATVVVLSKYELPEMLRSINAYGVTYLPLVPPILVA 304

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           +  H   K   L  ++ V SG APLGKEL+E   +  P   ++QGYGLTE++ I    +S
Sbjct: 305 MVAHP--KPLPLGQMRKVLSGGAPLGKELIEGFREKYPQVEILQGYGLTESTAIGASTDS 362

Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSS 193
              SR  G+AG L+P  EA IV  D+ + LP N+ GE+W+RGP +M+G    A    S+
Sbjct: 363 AEESRRYGTAGLLSPNTEAKIVDPDSGEALPVNRTGELWIRGPYVMKGYFKNAEATQST 421

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q84P23|4CLL9_ARATH 4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana GN=4CLL9 PE=1 SV=2

 Score =  145 bits (367), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 75/170 (44%), Positives = 106/170 (62%), Gaps = 1/170 (0%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D V L  LPLFHVFG  ++    +  G  ++L+ +F+LE   +A+EK++VT + V PPLI
Sbjct: 248 DRVGLFSLPLFHVFGFMMMIRA-ISLGETLVLLGRFELEAMFKAVEKYKVTGMPVSPPLI 306

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
           +AL K  L KK+DL SL+ +G G APLGK++ E   +  P   ++QGYGLTE+SG A   
Sbjct: 307 VALVKSELTKKYDLRSLRSLGCGGAPLGKDIAERFKQKFPDVDIVQGYGLTESSGPAAST 366

Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
                    GS G ++  +EA IV   T + LPP + GE+WLRGP +M+G
Sbjct: 367 FGPEEMVKYGSVGRISENMEAKIVDPSTGESLPPGKTGELWLRGPVIMKG 416

Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors. Converts 12-oxo-phytodienoic acid (OPDA) into OPDA-CoA.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|P0C5B6|4CLL4_ARATH 4-coumarate--CoA ligase-like 4 OS=Arabidopsis thaliana GN=4CLL4 PE=2 SV=1

 Score =  144 bits (363), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 70/172 (40%), Positives = 107/172 (62%), Gaps = 2/172 (1%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D +F+C +P+FH +GL     G +  GS ++++ +F L   + A+EKHR T + + PP++
Sbjct: 237 DDIFICTVPMFHTYGLLTFAMGTVALGSTVVILRRFQLHDMMDAVEKHRATALALAPPVL 296

Query: 73  LALAKHG-LVK-KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIAT 130
           +A+     L+K K+DLSSLK V  G APL KE+ E   +  P+  ++QGY LTE++G   
Sbjct: 297 VAMINDADLIKAKYDLSSLKTVRCGGAPLSKEVTEGFLEKYPTVDILQGYALTESNGGGA 356

Query: 131 MENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
             NS   SR  G+AG L   VEA IV  +T + +  NQ GE+WL+GP++ +G
Sbjct: 357 FTNSAEESRRYGTAGTLTSDVEARIVDPNTGRFMGINQTGELWLKGPSISKG 408

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q84P21|4CLL5_ARATH 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana GN=4CLL5 PE=1 SV=2

 Score =  144 bits (362), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 69/169 (40%), Positives = 109/169 (64%), Gaps = 2/169 (1%)

Query: 16  FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILAL 75
           F+C +P+FH++GLA    G L  GS II+++KF++   + AI K++ T + +VPP+++A+
Sbjct: 234 FICTVPMFHIYGLAAFATGLLAYGSTIIVLSKFEMHEMMSAIGKYQATSLPLVPPILVAM 293

Query: 76  AK--HGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
                 +  K+DLSS+  V  G APL KE+ E  A+  P+  ++QGYGLTE++GI    +
Sbjct: 294 VNGADQIKAKYDLSSMHTVLCGGAPLSKEVTEGFAEKYPTVKILQGYGLTESTGIGASTD 353

Query: 134 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
           +   SR  G+AG L+  +E  IV   T + L P Q GE+WL+GP++M+G
Sbjct: 354 TVEESRRYGTAGKLSASMEGRIVDPVTGQILGPKQTGELWLKGPSIMKG 402

Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors. Converts 12-oxo-phytodienoic acid (OPDA) and 3-oxo-2-(2'-pentenyl)-cyclopentane-1-octanoic acid (OPC-8:0) into OPDA-CoA and OPC-8:0-CoA, respectively.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|P31687|4CL2_SOYBN 4-coumarate--CoA ligase 2 OS=Glycine max PE=2 SV=2

 Score =  143 bits (361), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 79/173 (45%), Positives = 107/173 (61%), Gaps = 3/173 (1%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V LCVLPLFH+F L  +    L+ GS ++LM KF++   L  I++HRV+   VVPPL+LA
Sbjct: 246 VLLCVLPLFHIFSLNSVLLCALRAGSAVLLMQKFEIGTLLELIQRHRVSVAMVVPPLVLA 305

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           LAK+ +V  FDLSS++LV SGAAPLGKEL E     +P A + QGYG+TE   + +M   
Sbjct: 306 LAKNPMVADFDLSSIRLVLSGAAPLGKELEEALRNRMPQAVLGQGYGMTEAGPVLSMCLG 365

Query: 135 FAG---SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIM 184
           FA        GS G +    E  +V  +T + L  NQ GEI +RG  +M+G +
Sbjct: 366 FAKQPFQTKSGSCGTVVRNAELKVVDPETGRSLGYNQPGEICIRGQQIMKGYL 418

Glycine max (taxid: 3847)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P31684|4CL1_SOLTU 4-coumarate--CoA ligase 1 OS=Solanum tuberosum GN=4CL1 PE=3 SV=1

 Score =  140 bits (352), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 77/175 (44%), Positives = 105/175 (60%), Gaps = 3/175 (1%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D V +CVLPLFH++ L  +    L+ G+ I++M KFD+  FL  I KH+VT    VPP++
Sbjct: 229 DDVLMCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIAQFLELIPKHKVTIGPFVPPIV 288

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
           LA+AK  LV  +DLSS++ V SGAAPLGKEL +      P+A + QGYG+TE   +  M 
Sbjct: 289 LAIAKSPLVDNYDLSSVRTVMSGAAPLGKELEDAVRAKFPNAKLGQGYGMTEAGPVLAMC 348

Query: 133 NSFAGSR---NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIM 184
            +FA        G+ G +    E  IV  DT   LP NQ GEI +RG  +M+G +
Sbjct: 349 LAFAKEPFDIKSGACGTVVRNAEMKIVDPDTGCSLPRNQPGEICIRGDQIMKGYL 403

Solanum tuberosum (taxid: 4113)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P14913|4CL2_PETCR 4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL2 PE=2 SV=1

 Score =  140 bits (352), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 74/173 (42%), Positives = 106/173 (61%), Gaps = 3/173 (1%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V +C+LPLFH++ L  + C  L+ G  I++M KFD+  FL  I+K++VT    VPP++LA
Sbjct: 229 VMICILPLFHIYSLNAVLCCGLRAGVTILIMQKFDIVPFLELIQKYKVTIGPFVPPIVLA 288

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           +AK  +V K+DLSS++ V SGAAPLGKEL +      P+A + QGYG+TE   +  M  +
Sbjct: 289 IAKSPVVDKYDLSSVRTVMSGAAPLGKELEDAVRAKFPNAKLGQGYGMTEAGPVLAMCLA 348

Query: 135 FAGSR---NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIM 184
           FA        G+ G +    E  IV  +T   LP NQ GEI +RG  +M+G +
Sbjct: 349 FAKEPYEIKSGACGTVVRNAEMKIVDPETNASLPRNQRGEICIRGDQIMKGYL 401

Petroselinum crispum (taxid: 4043)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P14912|4CL1_PETCR 4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL1 PE=2 SV=1

 Score =  139 bits (351), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 74/173 (42%), Positives = 106/173 (61%), Gaps = 3/173 (1%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V +C+LPLFH++ L  + C  L+ G  I++M KFD+  FL  I+K++VT    VPP++LA
Sbjct: 229 VMICILPLFHIYSLNAVLCCGLRAGVTILIMQKFDIVPFLELIQKYKVTIGPFVPPIVLA 288

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           +AK  +V K+DLSS++ V SGAAPLGKEL +      P+A + QGYG+TE   +  M  +
Sbjct: 289 IAKSPVVDKYDLSSVRTVMSGAAPLGKELEDAVRAKFPNAKLGQGYGMTEAGPVLAMCLA 348

Query: 135 FAGSR---NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIM 184
           FA        G+ G +    E  IV  +T   LP NQ GEI +RG  +M+G +
Sbjct: 349 FAKEPYEIKSGACGTVVRNAEMKIVDPETNASLPRNQRGEICIRGDQIMKGYL 401

Petroselinum crispum (taxid: 4043)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
255565415	542	AMP dependent CoA ligase, putative [Rici	0.892	0.335	0.697	4e-72
380042366	543	acyl-activating enzyme 3 [Cannabis sativ	0.892	0.335	0.681	2e-70
224127622	543	4-coumarate-coa ligase [Populus trichoca	0.892	0.335	0.675	2e-69
224077516	543	4-coumarate-coa ligase [Populus trichoca	0.892	0.335	0.675	6e-69
15234634	544	4-coumarate--CoA ligase-like 7 [Arabidop	0.901	0.338	0.657	3e-68
297809709	544	hypothetical protein ARALYDRAFT_490166 [	0.901	0.338	0.652	6e-68
312281669	543	unnamed protein product [Thellungiella h	0.901	0.338	0.646	4e-67
373432591	540	4-coumarate--CoA ligase-like 7-like [Gly	0.892	0.337	0.664	1e-66
449459112	543	PREDICTED: 4-coumarate--CoA ligase-like	0.892	0.335	0.675	2e-65
225436506	544	PREDICTED: 4-coumarate--CoA ligase-like	0.892	0.334	0.642	2e-64

>gi|255565415|ref|XP_002523698.1| AMP dependent CoA ligase, putative [Ricinus communis] gi|223537002|gb|EEF38638.1| AMP dependent CoA ligase, putative [Ricinus communis]

 Score =  276 bits (705), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 127/182 (69%), Positives = 151/182 (82%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           M+TMDQE AGEL  VFLC LP+FHVFGLAVI   QLQ G+ ++ M KFD E+ L+A+EK+
Sbjct: 219 MITMDQEIAGELHNVFLCFLPMFHVFGLAVIAYSQLQTGNAVVSMGKFDFELVLKAVEKY 278

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           R+TH+WVVPP+ILALAK  LVKK+DLSSL+ VGSGAAPL KELMEECAK +P A + QGY
Sbjct: 279 RITHLWVVPPVILALAKQSLVKKYDLSSLQHVGSGAAPLSKELMEECAKTIPHAAIAQGY 338

Query: 121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           G+TET+GI ++EN   G R+ GSAG LA G+EA I+SVDT KPLPPNQLGEIW+RGPNMM
Sbjct: 339 GMTETTGIVSVENPRIGVRHSGSAGTLAAGIEAQIISVDTLKPLPPNQLGEIWVRGPNMM 398

Query: 181 RG 182
           RG
Sbjct: 399 RG 400

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|380042366|gb|AFD33347.1| acyl-activating enzyme 3 [Cannabis sativa]

 Score =  270 bits (691), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 124/182 (68%), Positives = 153/182 (84%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           MVTM+Q+  GE+D VFLC LP+FHVFGLA+IT  QLQ+G+ +I MA+FDLE  L+ +EK+
Sbjct: 220 MVTMEQDLVGEMDNVFLCFLPMFHVFGLAIITYAQLQRGNTVISMARFDLEKMLKDVEKY 279

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           +VTH+WVVPP+ILAL+K+ +VKKF+LSS+K +GSGAAPLGK+LMEEC+K VP   V QGY
Sbjct: 280 KVTHLWVVPPVILALSKNSMVKKFNLSSIKYIGSGAAPLGKDLMEECSKVVPYGIVAQGY 339

Query: 121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           G+TET GI +ME+   G RN GSAG LA GVEA IVSVDT KPLPPNQLGEIW++GPNMM
Sbjct: 340 GMTETCGIVSMEDIRGGKRNSGSAGMLASGVEAQIVSVDTLKPLPPNQLGEIWVKGPNMM 399

Query: 181 RG 182
           +G
Sbjct: 400 QG 401

Source: Cannabis sativa

Species: Cannabis sativa

Genus: Cannabis

Family: Cannabaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127622|ref|XP_002329323.1| 4-coumarate-coa ligase [Populus trichocarpa] gi|224127626|ref|XP_002329324.1| acyl:coa ligase [Populus trichocarpa] gi|222870777|gb|EEF07908.1| 4-coumarate-coa ligase [Populus trichocarpa] gi|222870778|gb|EEF07909.1| acyl:coa ligase [Populus trichocarpa]

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 123/182 (67%), Positives = 151/182 (82%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           MV+MDQ  AGE+  VFLC LP+FHVFGLAVIT  QLQ G+ ++ M KF+ EM LR IEK+
Sbjct: 220 MVSMDQVMAGEIHNVFLCFLPMFHVFGLAVITYSQLQMGNAVVSMGKFEFEMVLRTIEKY 279

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           RVTH+WVVPP+ILAL+K  LVKK+DLSSL+ +GSGAAPLGK+LM+ECAKN+P  T+IQG+
Sbjct: 280 RVTHMWVVPPVILALSKQNLVKKYDLSSLRNIGSGAAPLGKDLMKECAKNLPDTTIIQGF 339

Query: 121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           G+TET GI ++E+   G R+ GSAG L  G+EA I+SV+T KPLPPNQLGEIW+RGPNMM
Sbjct: 340 GMTETCGIVSLEDPRIGVRHSGSAGILNAGIEAQIISVETAKPLPPNQLGEIWVRGPNMM 399

Query: 181 RG 182
           RG
Sbjct: 400 RG 401

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077516|ref|XP_002305282.1| 4-coumarate-coa ligase [Populus trichocarpa] gi|222848246|gb|EEE85793.1| 4-coumarate-coa ligase [Populus trichocarpa]

 Score =  265 bits (678), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 123/182 (67%), Positives = 150/182 (82%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           MVTMDQ  AGE+  VFLC LP+FHVFGLAVIT  QLQ G+ ++ M KF+ EM L+ IEKH
Sbjct: 220 MVTMDQAMAGEMHDVFLCFLPMFHVFGLAVITYSQLQMGNAVVSMGKFEFEMVLKTIEKH 279

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           RVT +WVVPP++LALAK  +VKK+D+SSL+ +GSGAAPLGK+LM+ECAKN+P   + QGY
Sbjct: 280 RVTDMWVVPPVVLALAKQDMVKKYDISSLRNIGSGAAPLGKDLMKECAKNLPDTIISQGY 339

Query: 121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           G+TET GI ++E+S  G R+ GSAG LA G+EA IVSV+T KPLPPNQLGEIW+RGPNMM
Sbjct: 340 GMTETCGIVSVEDSRLGVRHSGSAGILAAGIEAQIVSVETLKPLPPNQLGEIWVRGPNMM 399

Query: 181 RG 182
           RG
Sbjct: 400 RG 401

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234634|ref|NP_192425.1| 4-coumarate--CoA ligase-like 7 [Arabidopsis thaliana] gi|75311763|sp|Q9M0X9.1|4CLL7_ARATH RecName: Full=4-coumarate--CoA ligase-like 7; AltName: Full=4-coumarate--CoA ligase isoform 6; Short=At4CL6 gi|7267275|emb|CAB81058.1| 4-coumarate--CoA ligase-like protein [Arabidopsis thaliana] gi|20258834|gb|AAM13899.1| putative 4-coumarate--CoA ligase [Arabidopsis thaliana] gi|21689723|gb|AAM67483.1| putative 4-coumarate--CoA ligase [Arabidopsis thaliana] gi|29893227|gb|AAP03022.1| 4-coumarate-CoA ligase-like protein [Arabidopsis thaliana] gi|332657086|gb|AEE82486.1| 4-coumarate--CoA ligase-like 7 [Arabidopsis thaliana]

 Score =  263 bits (672), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 121/184 (65%), Positives = 150/184 (81%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           MVTMDQ+  GE   VFLC LP+FHVFGLAVIT  QLQ+G+ ++ MA+F+LE+ L+ IEK 
Sbjct: 221 MVTMDQDLMGEYHGVFLCFLPMFHVFGLAVITYSQLQRGNALVSMARFELELVLKNIEKF 280

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           RVTH+WVVPP+ LAL+K  +VKKFDLSSLK +GSGAAPLGK+LMEEC +N+P+  ++QGY
Sbjct: 281 RVTHLWVVPPVFLALSKQSIVKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQGY 340

Query: 121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           G+TET GI ++E+   G RN GSAG LAPGVEA IVSV+T K  PPNQ GEIW+RGPNMM
Sbjct: 341 GMTETCGIVSVEDPRLGKRNSGSAGMLAPGVEAQIVSVETGKSQPPNQQGEIWVRGPNMM 400

Query: 181 RGIM 184
           +G +
Sbjct: 401 KGYL 404

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809709|ref|XP_002872738.1| hypothetical protein ARALYDRAFT_490166 [Arabidopsis lyrata subsp. lyrata] gi|297318575|gb|EFH48997.1| hypothetical protein ARALYDRAFT_490166 [Arabidopsis lyrata subsp. lyrata]

 Score =  262 bits (670), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 120/184 (65%), Positives = 149/184 (80%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           MVTMDQ+  GE   VFLC LP+FHVFGL VIT  QLQ+G+ ++ MAKF+LE+ L+ IEK+
Sbjct: 221 MVTMDQDLMGEYHGVFLCFLPMFHVFGLTVITYSQLQRGNALVSMAKFELELVLKNIEKY 280

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           RVTH+WVVPP+ LAL+K  +VKKFDLSSLK +GSGAAPLGK+LMEEC +N+P+  ++QGY
Sbjct: 281 RVTHLWVVPPVFLALSKQSIVKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQGY 340

Query: 121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           G+TET GI ++E+   G RN GSAG LAPGVEA IVSV+T    PPNQ GEIW+RGPNMM
Sbjct: 341 GMTETCGIVSVEDPRLGKRNSGSAGMLAPGVEAQIVSVETGNSQPPNQQGEIWVRGPNMM 400

Query: 181 RGIM 184
           +G +
Sbjct: 401 KGYL 404

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281669|dbj|BAJ33700.1| unnamed protein product [Thellungiella halophila]

 Score =  259 bits (663), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 119/184 (64%), Positives = 148/184 (80%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           MVTMDQ+  GE   VFLC LP+FHVFGL VIT  QLQ+G+ +I MAKF+LE  L+ IEK+
Sbjct: 220 MVTMDQDLMGEYHAVFLCFLPMFHVFGLTVITYSQLQRGNAVISMAKFELETLLKNIEKY 279

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           RVT +WVVPP+ LAL+K  +VKK+DLSSLK +GSGAAPLGK+LMEEC +N+ +  ++QGY
Sbjct: 280 RVTQLWVVPPVFLALSKQSIVKKYDLSSLKYIGSGAAPLGKDLMEECGRNISNVVLMQGY 339

Query: 121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           G+TET GI ++E+   G RN GSAG LAPGVEA IVSV++ K  PPNQLGEIW+RGPNMM
Sbjct: 340 GMTETCGIVSVEDPRLGKRNSGSAGMLAPGVEAQIVSVESGKSQPPNQLGEIWVRGPNMM 399

Query: 181 RGIM 184
           +G +
Sbjct: 400 KGYL 403

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|373432591|ref|NP_001243292.1| 4-coumarate--CoA ligase-like 7-like [Glycine max] gi|370316591|gb|AEX25890.1| 4-coumarate:CoA ligase [Glycine max]

 Score =  258 bits (658), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 121/182 (66%), Positives = 146/182 (80%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           M+  D + AG L  VFLCVLP+FHVFGL VI+ GQLQ+GS ++ + KF+ E+ L+ IEK 
Sbjct: 217 MIGFDDDLAGVLHSVFLCVLPMFHVFGLMVISYGQLQRGSAVVSLKKFEFELVLKTIEKF 276

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           +VTH+WVVPP+ILALAKHGLV K+DLSSLK +GSGAAPLGKELM+ECAK  P A V QGY
Sbjct: 277 KVTHLWVVPPIILALAKHGLVDKYDLSSLKHIGSGAAPLGKELMKECAKRFPHAIVSQGY 336

Query: 121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           G+TET GI ++EN+  G RN GS G L  G+EA +VSVDT KPLPP QLGEIW+RGPNMM
Sbjct: 337 GMTETCGIVSVENARMGIRNSGSTGMLVAGMEAQVVSVDTLKPLPPGQLGEIWVRGPNMM 396

Query: 181 RG 182
           +G
Sbjct: 397 QG 398

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459112|ref|XP_004147290.1| PREDICTED: 4-coumarate--CoA ligase-like 7-like [Cucumis sativus] gi|449528351|ref|XP_004171168.1| PREDICTED: 4-coumarate--CoA ligase-like 7-like [Cucumis sativus]

 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 123/182 (67%), Positives = 144/182 (79%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           M+TMDQ   GE   VFL  LP+FHVFGLA IT  QLQKG+ ++ M KF+LE  L A+EK+
Sbjct: 220 MITMDQTFNGEEHGVFLNFLPMFHVFGLACITYAQLQKGNTVVSMPKFNLEKALWAVEKY 279

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           +VT +WVVPP++LALAK  LVKK++LSS+K VGSGAAPLG+ELMEECA N+PSA VIQGY
Sbjct: 280 KVTDLWVVPPVVLALAKQSLVKKYNLSSVKRVGSGAAPLGRELMEECANNIPSAVVIQGY 339

Query: 121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           G+TET G+  +EN   G RN GSAG LA GVEA IVSVDT KPLPPNQ GEI +RGPNMM
Sbjct: 340 GMTETCGVVALENPAVGKRNSGSAGTLASGVEAKIVSVDTLKPLPPNQYGEIHVRGPNMM 399

Query: 181 RG 182
            G
Sbjct: 400 LG 401

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436506|ref|XP_002276353.1| PREDICTED: 4-coumarate--CoA ligase-like 7 [Vitis vinifera]

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 117/182 (64%), Positives = 145/182 (79%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           MVTMD+E  GE+  VFLC LP+FHVFGLAV+ C QLQ G  I+ M KFDL++ L++IEK+
Sbjct: 221 MVTMDEELMGEMHNVFLCFLPMFHVFGLAVVMCAQLQMGYTIVSMPKFDLDVALKSIEKY 280

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           RVTH+W+VPP++LAL K G + ++D+SSLK +GSGAAPLGKELMEECAK++P   V QGY
Sbjct: 281 RVTHMWLVPPVMLALVKQGKLDRYDISSLKHIGSGAAPLGKELMEECAKSLPHVAVGQGY 340

Query: 121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           G+TET GI + E    G ++ GS G L  GVEA I+SVDT KPLPPNQLGEIW+RGPNMM
Sbjct: 341 GMTETCGIVSKEIPKIGIQHTGSTGPLVSGVEAQIISVDTLKPLPPNQLGEIWVRGPNMM 400

Query: 181 RG 182
           +G
Sbjct: 401 KG 402

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
TAIR|locus:2115673	544	AT4G05160 [Arabidopsis thalian	0.901	0.338	0.657	9.7e-64
TAIR|locus:2158559	562	AT5G63380 [Arabidopsis thalian	0.818	0.297	0.441	1.8e-33
TAIR|locus:2034403	550	AT1G20500 [Arabidopsis thalian	0.833	0.309	0.406	9.7e-33
TAIR|locus:2034392	546	OPCL1 "OPC-8:0 CoA ligase1" [A	0.818	0.305	0.414	1.5e-32
TAIR|locus:2015003	561	4CL3 "4-coumarate:CoA ligase 3	0.818	0.297	0.423	4.4e-31
TAIR|locus:2176662	550	4CL8 [Arabidopsis thaliana (ta	0.897	0.332	0.378	5e-31
TAIR|locus:2034423	565	AT1G20480 [Arabidopsis thalian	0.813	0.293	0.386	5.9e-31
TAIR|locus:2094716	556	4CL2 "4-coumarate:CoA ligase 2	0.843	0.309	0.411	2e-30
TAIR|locus:2017602	561	4CL1 "4-coumarate:CoA ligase 1	0.838	0.304	0.414	2.1e-30
TAIR|locus:2117209	566	AT4G19010 [Arabidopsis thalian	0.872	0.314	0.388	1.3e-29

TAIR|locus:2115673 AT4G05160 [Arabidopsis thaliana (taxid:3702)]

 Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
 Identities = 121/184 (65%), Positives = 150/184 (81%)

Query:     1 MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
             MVTMDQ+  GE   VFLC LP+FHVFGLAVIT  QLQ+G+ ++ MA+F+LE+ L+ IEK 
Sbjct:   221 MVTMDQDLMGEYHGVFLCFLPMFHVFGLAVITYSQLQRGNALVSMARFELELVLKNIEKF 280

Query:    61 RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
             RVTH+WVVPP+ LAL+K  +VKKFDLSSLK +GSGAAPLGK+LMEEC +N+P+  ++QGY
Sbjct:   281 RVTHLWVVPPVFLALSKQSIVKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQGY 340

Query:   121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
             G+TET GI ++E+   G RN GSAG LAPGVEA IVSV+T K  PPNQ GEIW+RGPNMM
Sbjct:   341 GMTETCGIVSVEDPRLGKRNSGSAGMLAPGVEAQIVSVETGKSQPPNQQGEIWVRGPNMM 400

Query:   181 RGIM 184
             +G +
Sbjct:   401 KGYL 404

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0004321 "fatty-acyl-CoA synthase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IDA

GO:0009850 "auxin metabolic process" evidence=IDA

GO:0009851 "auxin biosynthetic process" evidence=IDA

TAIR|locus:2158559 AT5G63380 [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 1.8e-33, P = 1.8e-33
 Identities = 76/172 (44%), Positives = 110/172 (63%)

Query:    13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
             D V L  LPLFHVFG  ++    +  G  ++L+ +F+LE   +A+EK++VT + V PPLI
Sbjct:   248 DRVGLFSLPLFHVFGFMMMIRA-ISLGETLVLLGRFELEAMFKAVEKYKVTGMPVSPPLI 306

Query:    73 LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
             +AL K  L KK+DL SL+ +G G APLGK++ E   +  P   ++QGYGLTE+SG A   
Sbjct:   307 VALVKSELTKKYDLRSLRSLGCGGAPLGKDIAERFKQKFPDVDIVQGYGLTESSGPAA-- 364

Query:   133 NSFAGSRNI--GSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
             ++F     +  GS G ++  +EA IV   T + LPP + GE+WLRGP +M+G
Sbjct:   365 STFGPEEMVKYGSVGRISENMEAKIVDPSTGESLPPGKTGELWLRGPVIMKG 416

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0004321 "fatty-acyl-CoA synthase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IDA

GO:0009850 "auxin metabolic process" evidence=IDA

GO:0009851 "auxin biosynthetic process" evidence=IDA

TAIR|locus:2034403 AT1G20500 [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 9.7e-33, P = 9.7e-33
 Identities = 70/172 (40%), Positives = 107/172 (62%)

Query:    13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
             D +F+C +P+FH +GL     G +  GS ++++ +F L   + A+EKHR T + + PP++
Sbjct:   237 DDIFICTVPMFHTYGLLTFAMGTVALGSTVVILRRFQLHDMMDAVEKHRATALALAPPVL 296

Query:    73 LALAKHG-LVK-KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIAT 130
             +A+     L+K K+DLSSLK V  G APL KE+ E   +  P+  ++QGY LTE++G   
Sbjct:   297 VAMINDADLIKAKYDLSSLKTVRCGGAPLSKEVTEGFLEKYPTVDILQGYALTESNGGGA 356

Query:   131 MENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
               NS   SR  G+AG L   VEA IV  +T + +  NQ GE+WL+GP++ +G
Sbjct:   357 FTNSAEESRRYGTAGTLTSDVEARIVDPNTGRFMGINQTGELWLKGPSISKG 408

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

TAIR|locus:2034392 OPCL1 "OPC-8:0 CoA ligase1" [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 1.5e-32, P = 1.5e-32
 Identities = 70/169 (41%), Positives = 110/169 (65%)

Query:    16 FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILAL 75
             F+C +P+FH++GLA    G L  GS II+++KF++   + AI K++ T + +VPP+++A+
Sbjct:   234 FICTVPMFHIYGLAAFATGLLAYGSTIIVLSKFEMHEMMSAIGKYQATSLPLVPPILVAM 293

Query:    76 AKHG-LVK-KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
                   +K K+DLSS+  V  G APL KE+ E  A+  P+  ++QGYGLTE++GI    +
Sbjct:   294 VNGADQIKAKYDLSSMHTVLCGGAPLSKEVTEGFAEKYPTVKILQGYGLTESTGIGASTD 353

Query:   134 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
             +   SR  G+AG L+  +E  IV   T + L P Q GE+WL+GP++M+G
Sbjct:   354 TVEESRRYGTAGKLSASMEGRIVDPVTGQILGPKQTGELWLKGPSIMKG 402

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA;IMP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2015003 4CL3 "4-coumarate:CoA ligase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 4.4e-31, P = 4.4e-31
 Identities = 72/170 (42%), Positives = 105/170 (61%)

Query:    15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
             V LCVLPLFH++ L  +    L+ G+ ++LM KF++   L  I++HRVT   +VPPL++A
Sbjct:   252 VILCVLPLFHIYSLNSVLLNSLRSGATVLLMHKFEIGALLDLIQRHRVTIAALVPPLVIA 311

Query:    75 LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
             LAK+  V  +DLSS++ V SGAAPLGKEL +   + +P A + QGYG+TE   + +M   
Sbjct:   312 LAKNPTVNSYDLSSVRFVLSGAAPLGKELQDSLRRRLPQAILGQGYGMTEAGPVLSMSLG 371

Query:   135 FAGS---RNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR 181
             FA        GS G +    E  +V ++T+  L  NQ GEI +RG  +M+
Sbjct:   372 FAKEPIPTKSGSCGTVVRNAELKVVHLETRLSLGYNQPGEICIRGQQIMK 421

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0010584 "pollen exine formation" evidence=IMP

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR|locus:2176662 4CL8 [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 5.0e-31, P = 5.0e-31
 Identities = 70/185 (37%), Positives = 110/185 (59%)

Query:    16 FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILAL 75
             F+C +PLFH FGL       L  G+ ++++ +FDL   + A+EK+R T + +VPP+++ +
Sbjct:   243 FICTVPLFHTFGLLNFVLATLALGTTVVILPRFDLGEMMAAVEKYRATTLILVPPVLVTM 302

Query:    76 AKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
                   ++KK+D+S L+ V  G APL KE+ +   K  P+  V QGY LTE++G      
Sbjct:   303 INKADQIMKKYDVSFLRTVRCGGAPLSKEVTQGFMKKYPTVDVYQGYALTESNGAGASIE 362

Query:   134 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSS 193
             S   SR  G+ G L+ GVEA IV  +T + +  NQ GE+WL+GP++ +G       I++S
Sbjct:   363 SVEESRRYGAVGLLSCGVEARIVDPNTGQVMGLNQTGELWLKGPSIAKGYFRNEEEIITS 422

Query:   194 WGFRK 198
              G+ K
Sbjct:   423 EGWLK 427

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

TAIR|locus:2034423 AT1G20480 [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 5.9e-31, P = 5.9e-31
 Identities = 65/168 (38%), Positives = 105/168 (62%)

Query:    17 LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
             +C +P+ H+FG      G +  G  I+++ KFD+   L A+E HR +++ +VPP+++A+ 
Sbjct:   256 ICTIPMCHIFGFGGFATGLIALGWTIVVLPKFDMAKLLSAVETHRSSYLSLVPPIVVAMV 315

Query:    77 K--HGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
                + +  K+DLSSL  V +G APL +E+ E+  +N P   ++QGYGLTE++ IA    +
Sbjct:   316 NGANEINSKYDLSSLHTVVAGGAPLSREVTEKFVENYPKVKILQGYGLTESTAIAASMFN 375

Query:   135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
                ++  G++G LAP VE  IV  DT + L  NQ GE+W+R P +M+G
Sbjct:   376 KEETKRYGASGLLAPNVEGKIVDPDTGRVLGVNQTGELWIRSPTVMKG 423

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

TAIR|locus:2094716 4CL2 "4-coumarate:CoA ligase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 2.0e-30, P = 2.0e-30
 Identities = 72/175 (41%), Positives = 107/175 (61%)

Query:    13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
             D V LCVLP+FH++ L  I    L+ G+ I++M KF++ + L  I++ +VT   VVPP++
Sbjct:   240 DDVILCVLPMFHIYALNSIMLCSLRVGATILIMPKFEITLLLEQIQRCKVTVAMVVPPIV 299

Query:    73 LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
             LA+AK    +K+DLSS+++V SGAAPLGKEL +  +   P+A + QGYG+TE   +  M 
Sbjct:   300 LAIAKSPETEKYDLSSVRMVKSGAAPLGKELEDAISAKFPNAKLGQGYGMTEAGPVLAMS 359

Query:   133 NSFAGSR---NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIM 184
               FA        G+ G +    E  I+  DT   LP N+ GEI +RG  +M+G +
Sbjct:   360 LGFAKEPFPVKSGACGTVVRNAEMKILDPDTGDSLPRNKPGEICIRGNQIMKGYL 414

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

TAIR|locus:2017602 4CL1 "4-coumarate:CoA ligase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 2.1e-30, P = 2.1e-30
 Identities = 73/176 (41%), Positives = 109/176 (61%)

Query:    13 DYVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL 71
             D V LCVLP+FH++ L +++ CG L+ G+ I++M KF++ + L  I++ +VT   +VPP+
Sbjct:   247 DDVILCVLPMFHIYALNSIMLCG-LRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPI 305

Query:    72 ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM 131
             +LA+AK    +K+DLSS+++V SGAAPLGKEL +      P+A + QGYG+TE   +  M
Sbjct:   306 VLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAM 365

Query:   132 ENSFAGSR---NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIM 184
                FA        G+ G +    E  IV  DT   L  NQ GEI +RG  +M+G +
Sbjct:   366 SLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYL 421

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA;TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2117209 AT4G19010 [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 73/188 (38%), Positives = 112/188 (59%)

Query:    15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
             V+L  LPL H++GL++   G L  GS I++M +FD    +  IE+ ++TH  VVPP+++A
Sbjct:   252 VYLAALPLCHIYGLSLFVMGLLSLGSTIVVMKRFDASDVVNVIERFKITHFPVVPPMLMA 311

Query:    75 LAKH--GLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
             L K   G+  +    SLK V SGAAPL ++ +E+  + +P   +IQGYG+TE++ + T  
Sbjct:   312 LTKKAKGVCGEV-FKSLKQVSSGAAPLSRKFIEDFLQTLPHVDLIQGYGMTESTAVGTRG 370

Query:   133 -NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIM-----LI 186
              NS   SR   S G LAP ++A +V   +   LPP   GE+W++GP +M+G +       
Sbjct:   371 FNSEKLSR-YSSVGLLAPNMQAKVVDWSSGSFLPPGNRGELWIQGPGVMKGYLNNPKATQ 429

Query:   187 ASIILSSW 194
              SI+  SW
Sbjct:   430 MSIVEDSW 437

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0006914 "autophagy" evidence=RCA

GO:0009610 "response to symbiotic fungus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	204
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	7e-85
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	9e-60
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	8e-48
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	1e-47
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	1e-47
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	2e-46
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	7e-44
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	3e-42
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	3e-42
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	9e-42
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	3e-35
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	4e-35
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	2e-33
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	7e-33
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	7e-32
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	8e-32
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	1e-28
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	2e-27
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	5e-27
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	9e-26
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	2e-25
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	2e-25
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	2e-24
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	3e-23
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	3e-23
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	2e-22
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	9e-22
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	3e-21
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	7e-21
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	8e-21
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	8e-21
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	3e-20
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	4e-20
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	1e-19
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	2e-19
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	5e-19
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	8e-19
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	2e-18
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	2e-18
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	4e-18
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	8e-18
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	2e-17
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	1e-16
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	2e-16
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	2e-16
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	2e-16
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	3e-16
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	4e-16
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	4e-16
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	5e-16
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	5e-16
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	6e-16
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	8e-16
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	6e-15
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	1e-14
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	1e-14
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	1e-14
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	3e-14
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	3e-14
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	4e-14
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	7e-14
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	8e-14
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	8e-14
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	2e-13
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	4e-13
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	1e-12
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	3e-12
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	6e-12
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	6e-12
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	6e-12
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	2e-11
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	3e-11
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	3e-11
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	5e-11
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	5e-11
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	6e-11
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	4e-10
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	5e-10
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	6e-10
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	1e-09
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	2e-09
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	3e-09
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	4e-09
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	4e-09
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	4e-09
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	4e-09
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	1e-08
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	1e-08
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	2e-08
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	2e-08
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	4e-08
PTZ00237	647	PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi	5e-08
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	1e-07
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	2e-07
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	2e-07
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	3e-07
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	3e-07
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	6e-07
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	6e-07
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	6e-07
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	7e-07
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	9e-07
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	1e-06
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	1e-06
PRK03584	655	PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr	1e-06
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	1e-06
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	2e-06
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	2e-06
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	3e-06
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	8e-06
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	9e-06
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	9e-06
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	1e-05
COG1541	438	COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme	1e-05
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	2e-05
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	3e-05
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	3e-05
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	3e-05
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	4e-05
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	5e-05
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	6e-05
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	7e-05
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	1e-04
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	2e-04
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	2e-04
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	2e-04
PRK12476	612	PRK12476, PRK12476, putative fatty-acid--CoA ligas	3e-04
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	3e-04
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	3e-04
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	7e-04
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	7e-04
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	8e-04
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	0.002
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	0.002
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	0.003
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	0.003
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	0.004

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  259 bits (663), Expect = 7e-85
 Identities = 91/182 (50%), Positives = 122/182 (67%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
            +   +    + + V LCVLP+FH++GL VI    L+ G+ +++M +FDLE FL AIEK+
Sbjct: 189 QLVAGEGPNFDREDVTLCVLPMFHIYGLTVILLALLRLGATVVVMPRFDLEKFLAAIEKY 248

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           +VTH+ VVPP++LAL KH +V K+DLSSLK +GSGAAPLGKEL E      P   + QGY
Sbjct: 249 KVTHLPVVPPIVLALVKHPIVDKYDLSSLKQIGSGAAPLGKELAEAFRARFPGVELGQGY 308

Query: 121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           G+TE+S + TM          GS G L P VEA IV  +T + LPPNQ GE+W+RGP +M
Sbjct: 309 GMTESSPVTTMCPVPEKDPKPGSVGRLVPNVEAKIVDPETGESLPPNQPGELWVRGPQVM 368

Query: 181 RG 182
           +G
Sbjct: 369 KG 370

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  193 bits (494), Expect = 9e-60
 Identities = 81/182 (44%), Positives = 111/182 (60%), Gaps = 3/182 (1%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           +    +      + V L  LP +H +GL   T   L  G+ +I+M KFD E FL+ IEK+
Sbjct: 178 VQDTLKGNPDSSNDVVLTFLPFYHAYGLT-TTLASLLCGATVIIMPKFDSETFLKLIEKY 236

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           +VT +++VPP+ +ALAK  LV K+DLSSL+++ SGAAPL KEL EE  K  P+ T+ QGY
Sbjct: 237 KVTSLFLVPPIAVALAKSPLVDKYDLSSLRVIFSGAAPLSKELQEELRKRFPNTTIKQGY 296

Query: 121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           G+TET    T+          GS G L P VEA IV  D  K L PN+ GE+ ++GP +M
Sbjct: 297 GMTETGPATTLTPPGDEKP--GSVGRLVPNVEAKIVDEDGGKSLGPNERGELCVKGPQIM 354

Query: 181 RG 182
           +G
Sbjct: 355 KG 356

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  159 bits (404), Expect = 8e-48
 Identities = 70/172 (40%), Positives = 97/172 (56%), Gaps = 8/172 (4%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
             L  +PLFHVFGL +     L  G+ ++LM KFD    LR IE+ R+T +  VP + +A
Sbjct: 45  RTLVPVPLFHVFGLVLGVLASLTAGATLVLMEKFDPGAALRLIERERITALHGVPTMFIA 104

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           L +H    KFDLSSL+   SG AP+  EL+    +  P A +  GYG+TETSG+ T    
Sbjct: 105 LLEHPDFDKFDLSSLRTGISGGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQ--- 161

Query: 135 FAGSRN----IGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
            +G        G+ G   PGVE  IV  D    +PP ++GEI +RG ++M+G
Sbjct: 162 TSGDDPYEDRPGTVGRPLPGVEVKIVDPDGG-EVPPGEVGEICVRGYSVMKG 212

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  161 bits (410), Expect = 1e-47
 Identities = 70/168 (41%), Positives = 95/168 (56%), Gaps = 3/168 (1%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
            FL  LPLFH+FGL V     L+ G+  +L+  F     L+ I+++R T    VP L  A
Sbjct: 170 RFLTALPLFHIFGLTVNMLLGLRLGATNVLVPNFRPINVLKEIKRYRFTIFPGVPTLYNA 229

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           L  H   KK+D SSL+L  SG APL  E+ E   +    A +++GYGLTETS + T+ N 
Sbjct: 230 LLNHPEFKKYDFSSLRLCISGGAPLPVEVAER-FEEKTGAPLVEGYGLTETSPVTTV-NP 287

Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
             G R  GS G   PG E  IV  +    LPP ++GE+ +RGP +M+G
Sbjct: 288 LDGERKPGSIGLPLPGTEVKIVDDEGN-ELPPGEVGELVVRGPQVMKG 334

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  158 bits (403), Expect = 1e-47
 Identities = 68/182 (37%), Positives = 94/182 (51%), Gaps = 3/182 (1%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
            V            V+L   PL+H  G   +    L  G  ++LM KFD E  L  IE+H
Sbjct: 30  AVNALAGVDLSPGDVYLLAAPLYHAAGGLFLLPA-LAAGGTVVLMPKFDPEAVLDLIERH 88

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           RVTH ++VP +   L +     ++DLSSL+L+  GAAP+  EL     +       +QGY
Sbjct: 89  RVTHTFLVPTMFQRLLRLPDFARYDLSSLRLIIYGAAPMPAELKRAMIE-WFGPVFVQGY 147

Query: 121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           G+TET    T+ +     R +GS G   PGVE  IV  D  + LPP ++GEI +RGP +M
Sbjct: 148 GMTETGPTTTLLSPEDWLRKLGSVGRPVPGVEVRIVDEDG-RELPPGEVGEIVVRGPAVM 206

Query: 181 RG 182
            G
Sbjct: 207 AG 208

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score =  159 bits (405), Expect = 2e-46
 Identities = 78/174 (44%), Positives = 113/174 (64%), Gaps = 5/174 (2%)

Query: 13  DYVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL 71
           D V LCVLP+FH++ L +V+ CG L+ G+ I++M KF++   L  I++H+VT    VPP+
Sbjct: 224 DDVILCVLPMFHIYSLNSVLLCG-LRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPI 282

Query: 72  ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM 131
           +LA+AK  +V+K+DLSS+++V SGAAPLGKEL +     +P+A + QGYG+TE   +  M
Sbjct: 283 VLAIAKSPVVEKYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAM 342

Query: 132 ENSFAGSR---NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
             +FA        GS G +    E  IV  +T   LP NQ GEI +RGP +M+G
Sbjct: 343 CLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIRGPQIMKG 396

Length = 537

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  148 bits (377), Expect = 7e-44
 Identities = 72/169 (42%), Positives = 100/169 (59%), Gaps = 4/169 (2%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFD-LEMFLRAIEKHRVTHIWVVPPLIL 73
           V L VLPLFHV G      G L  G  ++L   F     FL  IE++RVT ++ VP L  
Sbjct: 43  VLLSVLPLFHVVGGGSGLLGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYD 102

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
           ALAK    + +DLSSL+L+ SG  PL  EL+E   +  P A +++GYGLTETS + +  N
Sbjct: 103 ALAKAAEDRGYDLSSLRLLISGGEPLSPELLER-FEERPGAPILEGYGLTETSVVTST-N 160

Query: 134 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
             +  +  G+ G   PGVE  +V  +  KPLPP ++GE+ +RGP +M+G
Sbjct: 161 PDSELKKPGTVGRPVPGVEVRVVDEEG-KPLPPGEVGELVVRGPWVMKG 208

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  148 bits (376), Expect = 3e-42
 Identities = 72/171 (42%), Positives = 95/171 (55%), Gaps = 4/171 (2%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILM--AKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           V L  LPLFH+FGL V     L  G  ++L+    FD E  L  IEK++VT +  VP  +
Sbjct: 216 VVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFL 275

Query: 73  LALAKHGLVKKFDLSS-LKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM 131
             L  +      DLSS L+LV SG APL  EL+E   +      +++GYGLTETS + T+
Sbjct: 276 RELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTI 335

Query: 132 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
                     GS G   PGVE  IV  D  + L P ++GEIW+RGPN+M+G
Sbjct: 336 NPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVL-PGEVGEIWVRGPNVMKG 385

Length = 534

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  146 bits (370), Expect = 3e-42
 Identities = 62/170 (36%), Positives = 90/170 (52%), Gaps = 4/170 (2%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDL--EMFLRAIEKHRVTHIWVVPPLI 72
             L +LPL     +  I    L  G  ++L+ KF L     L  IEK++VT ++ VP L+
Sbjct: 174 RVLLLLPLHFDGSVWEIFGP-LLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLYGVPTLL 232

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
             L K    KK+DLSSL+LV SG  PL  EL+    +      ++ GYG TET+ +AT  
Sbjct: 233 RLLLKAPEEKKYDLSSLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATAN 292

Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
                    GS G   PGVE  ++  + + P+PP ++GE+ +RGP + RG
Sbjct: 293 LPGDPEVKPGSIGRPLPGVEVKVLDEEGE-PVPPGEVGELCIRGPGVARG 341

Length = 412

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score =  147 bits (373), Expect = 9e-42
 Identities = 68/188 (36%), Positives = 107/188 (56%), Gaps = 6/188 (3%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D V+L  LP+FH++GL++   G L  GS I++M +FD    ++ I++ +VTH  VVPP++
Sbjct: 244 DNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPIL 303

Query: 73  LALAKHGL-VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM 131
           +AL K    V    L SLK V  GAAPL  + +++  + +P    IQGYG+TE++ + T 
Sbjct: 304 MALTKKAKGVCGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTR 363

Query: 132 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIM-----LI 186
             +        S G LAP ++A +V   T   LPP   GE+W++GP +M+G +       
Sbjct: 364 GFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQ 423

Query: 187 ASIILSSW 194
           ++I    W
Sbjct: 424 STIDKDGW 431

Length = 560

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  129 bits (327), Expect = 3e-35
 Identities = 62/174 (35%), Positives = 89/174 (51%), Gaps = 9/174 (5%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V+L ++P+FHV    +     L  G+  ++  +FD E  L  IE  RVT  + VP +   
Sbjct: 210 VYLVIVPMFHVHAWGLPYLA-LMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQM 268

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM--- 131
           L K       D SSL+LV  G A L   L+ E  +      ++QGYG+TETS + ++   
Sbjct: 269 LLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKE-KFGIDLVQGYGMTETSPVVSVLPP 327

Query: 132 -ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN--QLGEIWLRGPNMMRG 182
            +          SAG   PGVEA IV  D    LPP+  ++GEI +RGP +M+G
Sbjct: 328 EDQLPGQWTKRRSAGRPLPGVEARIVD-DDGDELPPDGGEVGEIIVRGPWLMQG 380

Length = 521

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  128 bits (325), Expect = 4e-35
 Identities = 59/170 (34%), Positives = 87/170 (51%), Gaps = 8/170 (4%)

Query: 17  LCVLPLFHVFGL--AVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           L   P FHVFG    V     L +G+ I+ +  FD +   R IE  R+T +   P +  +
Sbjct: 211 LAANPFFHVFGYKAGVNAP--LMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNS 268

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           L +H      DLSSL+L  +GAA +   L+E     +    V+ GYGL+E SG+ T  N 
Sbjct: 269 LLQHPDRSAEDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTF-NR 327

Query: 135 FAGSRNI--GSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
               R    G+ G    GVE  IV+   +  +P  ++GE+ +RGPN+M+G
Sbjct: 328 LDDDRKTVAGTIGTAIAGVENKIVNELGE-EVPVGEVGELLVRGPNVMKG 376

Length = 513

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score =  124 bits (313), Expect = 2e-33
 Identities = 67/172 (38%), Positives = 108/172 (62%), Gaps = 2/172 (1%)

Query: 11  ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPP 70
           E + V L VLP FHV+G+  +    + +G  ++L+ KFD++M   AI+KH+VT     P 
Sbjct: 247 EGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPT 306

Query: 71  LILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIAT 130
           + +AL    L+K++D+SS++   SG+APL  E+ E+  + V    +++GYGLTE+S + T
Sbjct: 307 IYIALLNSPLLKEYDISSIRACISGSAPLPVEVQEK-FETVTGGKLVEGYGLTESSPV-T 364

Query: 131 MENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
             N     R  GS G   P  EA+I+S++T + LPP ++GEI ++GP +M+G
Sbjct: 365 HSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEALPPGEIGEIVVKGPQIMKG 416

Length = 563

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score =  121 bits (306), Expect = 7e-33
 Identities = 57/171 (33%), Positives = 84/171 (49%), Gaps = 9/171 (5%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L  LPLFHV G+       +  G+ ++L+ ++D E   RAIE++RVTH   +  +++ 
Sbjct: 127 VLLAFLPLFHVAGMQGSMNAPIYTGATLVLLTRWDREAAARAIERYRVTHWTNIVTMVVD 186

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSAT---VIQGYGLTETSGIATM 131
           L  H     +DLSSLK+VG G A L   + E         T     +GYGLTET      
Sbjct: 187 LLAHPRFADYDLSSLKVVGGGGAALPPAVAERLKA----LTGLLYEEGYGLTETHTCTHF 242

Query: 132 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
                        G    G +A ++  +T + LPP + GEI +RGP + +G
Sbjct: 243 NPPDRPKP--QCLGIPVFGTDARVIDPETGEELPPGEEGEIVVRGPQVFKG 291

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  117 bits (296), Expect = 7e-32
 Identities = 58/169 (34%), Positives = 78/169 (46%), Gaps = 8/169 (4%)

Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           L V+PLFH+ GL V     L  G  ++   KF    F   I K+RVT    VP +   L 
Sbjct: 47  LNVMPLFHIHGLIVSLLATLLAGGSVVCPPKFSASKFWDDIAKYRVTWYSAVPTIHQILL 106

Query: 77  KHGLVKKFD-LSSLKLVGSGAAPLGKELMEECAK--NVPSATVIQGYGLTETSGIATMEN 133
           K            L+ + S +APL   +++   K   VP   V++ YG+TE +       
Sbjct: 107 KTAKPNPGKPPPRLRFIRSASAPLPPAVLDRLEKRFGVP---VLEAYGMTEAAHQIASNP 163

Query: 134 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
                R  GS G    GVE  I+  D + PLPP Q GEI +RGPN+  G
Sbjct: 164 LPPLVRKPGSVG-RPAGVEVAILDDDGR-PLPPGQEGEIVIRGPNVTAG 210

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score =  120 bits (301), Expect = 8e-32
 Identities = 70/179 (39%), Positives = 102/179 (56%), Gaps = 4/179 (2%)

Query: 5   DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTH 64
            + T G+++ V +CVLPLFH++ L VI    L++G  I L  +FD+    R IE+ R T 
Sbjct: 231 SRATRGDVERV-ICVLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATV 289

Query: 65  IWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTE 124
              VP + +ALA    ++K DLSSL  +GSG APL  E+     +      +  G+G+TE
Sbjct: 290 FPGVPTMWIALANDPSLEKRDLSSLATIGSGGAPLPVEVANFFERKT-GLKLKSGWGMTE 348

Query: 125 TSGIATMENSFAGSRNIGSAGALAPGVEALIVSV-DTQKPLPPNQLGEIWLRGPNMMRG 182
           T    T  +   G    GS G + PG+E  +VS+ D  K LPP ++GE+ +RGPN+ RG
Sbjct: 349 TCSPGT-GHPPEGPDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEVGELRIRGPNVTRG 406

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score =  111 bits (279), Expect = 1e-28
 Identities = 60/171 (35%), Positives = 92/171 (53%), Gaps = 5/171 (2%)

Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           L ++P FH++G+  I C  L+    +++M++F+L  FL A+    V+   +VPP+IL L 
Sbjct: 231 LGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLV 290

Query: 77  KHGLVKKFDLSSLKL--VGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           K+ +V++FDLS LKL  + + AAPL  EL+       P   V + YGLTE S I      
Sbjct: 291 KNPIVEEFDLSKLKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGD 350

Query: 135 FAGSRNIG---SAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
                 I    S G + P +E   +  DT + LP N  GE+ +R   +M+G
Sbjct: 351 PEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQG 401

Length = 546

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score =  107 bits (269), Expect = 2e-27
 Identities = 49/169 (28%), Positives = 77/169 (45%), Gaps = 3/169 (1%)

Query: 15  VFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V+L VLP  H F L+     G L  G  ++L      ++    IE+ +VTH  +VP L+ 
Sbjct: 182 VYLAVLPAAHNFTLSSPGLLGALLAGGTVVLHHPPSPDVAFPLIEREKVTHTALVPALLN 241

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
              +     + DLSSL+++  G APL  EL     +      + Q +G+ E     T  +
Sbjct: 242 LWLEAAEWDQADLSSLRVIQVGGAPLSPELARR-VEERLGCPLQQVFGMAEGLVNYTRLD 300

Query: 134 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
                        ++P  E  IV    + P+PP ++GE+  RGP  +RG
Sbjct: 301 DPPDVIMRTQGRPISPADEIRIVDDQGE-PVPPGEVGELLTRGPYTIRG 348

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score =  106 bits (267), Expect = 5e-27
 Identities = 61/174 (35%), Positives = 90/174 (51%), Gaps = 15/174 (8%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPP--LI 72
           V L VLPLFHV G+       +  G+ ++LM ++D E   R IE++RVTH W   P  ++
Sbjct: 233 VVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTH-WTNIPTMVV 291

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPL----GKELMEECAKNVPSATVIQGYGLTETSGI 128
             LA  GL  + DLSSL+ +G G A +     + L E           ++GYGLTET   
Sbjct: 292 DFLASPGL-AERDLSSLRYIGGGGAAMPEAVAERLKELTG-----LDYVEGYGLTETMA- 344

Query: 129 ATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
            T  N     +     G    GV+A ++  +T + LPP ++GEI + GP + +G
Sbjct: 345 QTHSNPPDRPKL-QCLGIPTFGVDARVIDPETLEELPPGEVGEIVVHGPQVFKG 397

Length = 546

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  101 bits (254), Expect = 9e-26
 Identities = 43/171 (25%), Positives = 73/171 (42%), Gaps = 4/171 (2%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDL-EMFLRAIEKHRVTHIWVVPPL 71
           D   L VLP    +GL+ +     + G  ++L ++F      L+ + K R+T    VP  
Sbjct: 43  DDRILAVLPFSFDYGLSQLLT-AFRVGGTLVLESRFAFPRDVLKHLAKERITGFAGVPTT 101

Query: 72  ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM 131
              L +   + + D  SL+ + +    L  + + +  +  P A +   YGLTE      +
Sbjct: 102 WAQLLRLDPLAREDFPSLRYLTNAGGALPAKTILQLRRAFPDAKLFSMYGLTEAFRSTYL 161

Query: 132 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
                  R   S G   P VE  +V  +      P ++GE+  RG N+M+G
Sbjct: 162 PPEELDRR-PDSIGKAIPNVELWVVD-EDGNRCAPGEVGELVHRGANVMKG 210

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  101 bits (254), Expect = 2e-25
 Identities = 55/171 (32%), Positives = 80/171 (46%), Gaps = 6/171 (3%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L  LPL HV GL       L  G+ +  + +FD +         R+T    VP +   
Sbjct: 131 VLLHALPLHHVHGLFNALHCPLWAGASVEFLPRFDPQERDALRLLPRITVFMGVPTIYTR 190

Query: 75  LAKH---GLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM 131
           L +H            +L+L  SG+A L   ++E   +     T+++ YG+TET G+A  
Sbjct: 191 LLEHYEFDDAAAAAARNLRLFVSGSAALPVPVLERWEE-RTGHTLLERYGMTET-GMAL- 247

Query: 132 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
            N   G R  G+ G   PGVE  IV  D  +PL   ++GEI +RGPN+   
Sbjct: 248 SNPLDGERRPGTVGLPLPGVEVRIVDEDGGEPLAAGEVGEIQVRGPNVFSE 298

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  101 bits (254), Expect = 2e-25
 Identities = 64/170 (37%), Positives = 85/170 (50%), Gaps = 22/170 (12%)

Query: 17  LCVLPLFHVFGLAVIT-CGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPP-LILA 74
           L  LPLFHV GLA++     L  G  ++L  KFD E    A+E H VTHI +VP  L   
Sbjct: 122 LLSLPLFHVSGLAIVMRS--LLAGGALVLPDKFDAEAIAEALENHGVTHISLVPTQLQRL 179

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEEC-AKNVPSATVIQGYGLTET-SGIATME 132
           L   G      LSSL+ V  G AP+   L+E+   + +P   +   YG+TET S +AT++
Sbjct: 180 LESLG---ARWLSSLRAVLLGGAPIPPSLLEQARQRGIP---LYPTYGMTETASQVATLK 233

Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
                   +GS G   PG E  IV           Q GEI +RGP++  G
Sbjct: 234 PDDF-LAKLGSVGKPLPGRELRIV---------NPQDGEILVRGPSLFLG 273

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 98.9 bits (247), Expect = 2e-24
 Identities = 60/175 (34%), Positives = 92/175 (52%), Gaps = 24/175 (13%)

Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           L  +P+FH+ GL+ I    +  G  ++L+ KFD E   + ++   VT I VV  ++    
Sbjct: 186 LAAVPIFHISGLS-ILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTML---- 240

Query: 77  KHGLVKKFDL----SSLK--LVGSGAAPLGKELMEEC-AKNVPSATVIQGYGLTET-SGI 128
              L+++       SS +  L+G G AP  K L+E+C  K +P   V Q YG+TET S I
Sbjct: 241 -QRLLERLGEGTYPSSFRCMLLGGGPAP--KPLLEQCKEKGIP---VYQSYGMTETASQI 294

Query: 129 ATMENSFAGSRNIGSAG-ALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
            T+    A ++ +GSAG  L P  E  I        +PP + GEI ++GPN+ +G
Sbjct: 295 VTLSPEDALTK-LGSAGKPLFP-CELKIE--KDGVVVPPFEEGEIVVKGPNVTKG 345

Length = 483

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score = 95.8 bits (239), Expect = 3e-23
 Identities = 50/177 (28%), Positives = 72/177 (40%), Gaps = 15/177 (8%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILM---AKFDLEMFLRAIEKHRVTHIWVVPPL 71
            F        ++GL       L  G+  +L      +  E    A+EK++VT     P  
Sbjct: 215 RFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTF 274

Query: 72  ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM 131
           +  L K GL + +DLSSL+++GS   PL  E  E    +     ++  YG TET      
Sbjct: 275 LRRLMKLGLGEPYDLSSLRVLGSAGEPLNPEAFEW-FYSALGVWILDIYGQTETGMGF-- 331

Query: 132 ENSFAGSRNI--GSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPN--MMRGIM 184
               AG   +  GS+G   PG     V  D   P+PP   GE+ +R P   M     
Sbjct: 332 ---IAGRPPVKNGSSGLPLPGYAVRRV-DDEGNPVPPGV-GELVVRLPWPGMALTYW 383

Length = 528

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score = 95.8 bits (239), Expect = 3e-23
 Identities = 56/178 (31%), Positives = 89/178 (50%), Gaps = 11/178 (6%)

Query: 10  GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVP 69
           G+     L  LP+FH +GL +     +  G  ++L+   D+++ L A++KH  T +  VP
Sbjct: 259 GDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVP 318

Query: 70  PL---ILALA-KHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTET 125
           PL   I   A + G+    DLS ++   SGA  L    +E   K +    +++GYGLTET
Sbjct: 319 PLYEKIAEAAEERGV----DLSGVRNAFSGAMALPVSTVELWEK-LTGGLLVEGYGLTET 373

Query: 126 SGIATMENSFAGSRNIGSAGALAPGVEALIVSVDT-QKPLPPNQLGEIWLRGPNMMRG 182
           S I  + N  +  R  G  G   P  E  IV  +   + +P  + GE+ +RGP + +G
Sbjct: 374 SPII-VGNPMSDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEGELLVRGPQVFKG 430

Length = 573

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score = 93.4 bits (233), Expect = 2e-22
 Identities = 59/185 (31%), Positives = 83/185 (44%), Gaps = 33/185 (17%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL- 71
               L  LPL HVF   +     L  G+ +        E  L  + + R T  + VP + 
Sbjct: 129 GDRVLSFLPLAHVFEQRLGEYLPLSSGARVNFAE--SPETLLEDLREVRPTVFFAVPRVW 186

Query: 72  ------ILA-LAKHGLVKK--FD----LSSLKLVGSGAAPLGKELMEECAK-NVPSATVI 117
                 I A +A  G +K+  F        L+   SG APL  E++E      +P   ++
Sbjct: 187 EKIYAGIEAKVAAAGPLKRKLFRWALGGGRLRFAVSGGAPLPPEVLEFFRALGIP---IL 243

Query: 118 QGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGP 177
           +GYGLTETSG+AT+  +  G   IG+ G   PGVE  I              GEI +RGP
Sbjct: 244 EGYGLTETSGVATV--NRPGDIRIGTVGKPLPGVEVRIAED-----------GEILVRGP 290

Query: 178 NMMRG 182
           N+M+G
Sbjct: 291 NVMKG 295

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score = 91.8 bits (228), Expect = 9e-22
 Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 5/164 (3%)

Query: 19  VLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH 78
           +LPLFH+ G+ +     L  G  II+  KF+    L  IEKH+VT +  VP +  AL   
Sbjct: 196 LLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINC 255

Query: 79  GLVKKFDLSSLKLVGSGAAPLGKELMEECA-KNVPSATVIQGYGLTETSGIATMENSFAG 137
              +  +L S++   +G AP  +ELM E   +        QG+G+TETS    M +    
Sbjct: 256 SKFETTNLQSVRWFYNGGAPCPEELMREFIDRGFLFG---QGFGMTETSPTVFMLSEEDA 312

Query: 138 SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR 181
            R +GS G      +  ++  +  K +   ++GE+ +RGPN+M+
Sbjct: 313 RRKVGSIGKPVLFCDYELIDENKNK-VEVGEVGELLIRGPNVMK 355

Length = 496

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 90.0 bits (224), Expect = 3e-21
 Identities = 60/190 (31%), Positives = 93/190 (48%), Gaps = 12/190 (6%)

Query: 1   MVTMDQETAGELDY----VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRA 56
           + TM Q    E ++     FL   PL H  G   +    L +G  +I++AKFD    LRA
Sbjct: 193 IATMAQIQLAEWEWPADPRFLMCTPLSHAGGAFFLPT--LLRGGTVIVLAKFDPAEVLRA 250

Query: 57  IEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATV 116
           IE+ R+T  ++VP +I AL  H  ++  DLSSL+ V  GA+P+    + E A        
Sbjct: 251 IEEQRITATFLVPTMIYALLDHPDLRTRDLSSLETVYYGASPMSPVRLAE-AIERFGPIF 309

Query: 117 IQGYGLTET-SGIATM---ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEI 172
            Q YG TE    I  +   ++     + + S G   PG+   ++  D +  +   ++GEI
Sbjct: 310 AQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLDEDGR-EVAQGEVGEI 368

Query: 173 WLRGPNMMRG 182
            +RGP +M G
Sbjct: 369 CVRGPLVMDG 378

Length = 524

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score = 89.2 bits (222), Expect = 7e-21
 Identities = 54/169 (31%), Positives = 84/169 (49%), Gaps = 6/169 (3%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V L  LPLFH FGL V     L  G  ++      D +     I  ++ T +   P  + 
Sbjct: 188 VLLGALPLFHAFGLTVTLLLPLLTGLRVVYYPNPLDAKKIAELIRDYKATILCGTPTFLR 247

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
             A++      D SSL+LV +GA  L +   E   +      +++GYG TE S + ++ N
Sbjct: 248 GYARN--AHPEDFSSLRLVVAGAEKLPEATRELFEEKF-GIRILEGYGATECSPVISV-N 303

Query: 134 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
           +  G++  G+ G   PG+E  IVS +T + LP  + G + +RGPN+M G
Sbjct: 304 TPMGNK-PGTVGRPLPGIEVRIVSPETHEELPIGEGGLLLVRGPNVMSG 351

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 89.0 bits (221), Expect = 8e-21
 Identities = 55/176 (31%), Positives = 83/176 (47%), Gaps = 28/176 (15%)

Query: 17  LCVLPLFH----VFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           L   PL+H     +GL     G +     ++L  +FD E  L+ IE+HR+TH+ +VP + 
Sbjct: 200 LLTGPLYHSAPNAYGLRAGRLGGV-----LVLQPRFDPEELLQLIERHRITHMHMVPTMF 254

Query: 73  LALAK--HGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSA-------TVIQGYGLT 123
           + L K    +  K+D+SSL+ V   AAP        C  +V  A        + + YG T
Sbjct: 255 IRLLKLPEEVRAKYDVSSLRHVIHAAAP--------CPADVKRAMIEWWGPVIYEYYGST 306

Query: 124 ETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNM 179
           E+ G  T   S     + G+ G  APG E   V  +  +PLP  ++GEI+ R    
Sbjct: 307 ES-GAVTFATSEDALSHPGTVGKAAPGAELRFVD-EDGRPLPQGEIGEIYSRIAGN 360

Length = 509

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 89.2 bits (222), Expect = 8e-21
 Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 27/185 (14%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIIL-----------MAKFDLEMFLRAIEKHRVT 63
              C LPLFHV  L V     L +G+ ++L           +A      F + +E++R+ 
Sbjct: 256 TVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIAN-----FWKIVERYRIN 310

Query: 64  HIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELME--ECAKNVPSATVIQGYG 121
            +  VP +  AL +   V   D+SSL+    GAAPL  E+    E A  V    +++GYG
Sbjct: 311 FLSGVPTVYAALLQVP-VDGHDISSLRYALCGAAPLPVEVFRRFEAATGVR---IVEGYG 366

Query: 122 LTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVD----TQKPLPPNQLGEIWLRGP 177
           LTE + ++++ N   G R IGS G   P     +V +D      +    +++G + + GP
Sbjct: 367 LTEATCVSSV-NPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGP 425

Query: 178 NMMRG 182
           N+  G
Sbjct: 426 NVFSG 430

Length = 632

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 86.6 bits (215), Expect = 3e-20
 Identities = 55/180 (30%), Positives = 88/180 (48%), Gaps = 13/180 (7%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA------KFDLEMFLRAIEKHRVTHIW 66
             V L  LPLFHV G  V     L +G+ ++L           +  F + +E++RVT + 
Sbjct: 43  GDVLLNGLPLFHVGGAIVTGLAPLARGATVVLPTPSGFRNPAVVANFWKIVERYRVTLLS 102

Query: 67  VVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETS 126
            VP ++ AL +  L    D+SSL+   +GAAPL  E+     + V    V++GYG+TE +
Sbjct: 103 AVPTVLAALLQVPLGDA-DISSLRYALTGAAPLPVEVARR-FEAVTGVPVVEGYGMTEGT 160

Query: 127 GIATMENSFAGSRNIGSAGALAPGVEALIVSVD----TQKPLPPNQLGEIWLRGPNMMRG 182
           G++ +     G R  GS G   P     +  +D      +   P ++G + +RGPN+  G
Sbjct: 161 GVSAINPRG-GPRRPGSVGLRLPYTRVRVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPG 219

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 87.2 bits (217), Expect = 4e-20
 Identities = 54/182 (29%), Positives = 92/182 (50%), Gaps = 17/182 (9%)

Query: 10  GELDYVFLCVLPLFHVFG--LAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIW 66
            E D + + V PL+H FG  L  + C  +  G+ ++     FD    L A+E+ R T ++
Sbjct: 238 TEEDRLCIPV-PLYHCFGMVLGNLAC--VTHGATMVYPGEGFDPLATLAAVEEERCTALY 294

Query: 67  VVPPLILALAKHGLVKKFDLSSLK---LVGSGAAPLGKELMEECAKNVPSATVIQGYGLT 123
            VP + +A   H    +FDLSSL+   + GS   P   E+M+     +  + V   YG+T
Sbjct: 295 GVPTMFIAELDHPDFARFDLSSLRTGIMAGS---PCPIEVMKRVIDKMHMSEVTIAYGMT 351

Query: 124 ETSGIATM---ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           ETS ++T    ++     + + + G   P +E  IV  +T + +P  + GE+  RG ++M
Sbjct: 352 ETSPVSTQTRTDDPLE--KRVTTVGRALPHLEVKIVDPETGETVPRGEQGELCTRGYSVM 409

Query: 181 RG 182
           +G
Sbjct: 410 KG 411

Length = 559

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score = 85.6 bits (212), Expect = 1e-19
 Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 8/171 (4%)

Query: 17  LCV-LPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILA 74
           LCV +PL+H FG+ +   G +  G+C++   + FD    L+A+E+ R T ++ VP + +A
Sbjct: 245 LCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIA 304

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIA---TM 131
              H     FDLSSL+      AP   E+M      +  A V   YG+TETS ++   T 
Sbjct: 305 ELDHPQRGNFDLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTA 364

Query: 132 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
            +     R + + G   P +E  +V  D    +P  ++GE+  RG ++M+G
Sbjct: 365 ADDL--ERRVETVGRTQPHLEVKVVDPDGAT-VPRGEIGELCTRGYSVMKG 412

Length = 558

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 84.9 bits (210), Expect = 2e-19
 Identities = 58/170 (34%), Positives = 78/170 (45%), Gaps = 7/170 (4%)

Query: 16  FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILAL 75
            L V PL+HV    +     L  G  + +  +FD E  L AIE+HR+T  W+ P ++  +
Sbjct: 193 LLVVGPLYHVGAFDLPGIAVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRV 252

Query: 76  AKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTET-SGIATMENS 134
                  +FDL SL     G     +  + +  +    A  I  YGLTET SG   ME  
Sbjct: 253 LTVPDRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLME-- 310

Query: 135 FAGSR--NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
            AG     IGS G     VE  I      + LPPN  GEI +RGP + +G
Sbjct: 311 -AGREIEKIGSTGRALAHVEIRIAD-GAGRWLPPNMKGEICMRGPKVTKG 358

Length = 497

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score = 83.8 bits (208), Expect = 5e-19
 Identities = 51/184 (27%), Positives = 78/184 (42%), Gaps = 9/184 (4%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFG--LAVITCGQLQKGSCIILMAKFDLEMFLRAIE 58
            V     T  +   V L   PL H+ G    +     L  G+ ++L  ++D    L  I 
Sbjct: 125 YVERLGLTPDD---VVLMPSPLAHITGFLYGLELP--LLLGATVVLQDRWDPARALELIR 179

Query: 59  KHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
           +H VT      P +  L         DL SL++   G AP+ +EL    A+ +  A V++
Sbjct: 180 EHGVTFTMGATPFLADLLAAADAAGPDLPSLRVFLCGGAPVPRELARRAAEALG-AKVVR 238

Query: 119 GYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPN 178
            YG+TE   +          +   + G   PGVE  IV  D    +PP + GE+ +RGP 
Sbjct: 239 AYGMTEVPLVTVGTPDDPDDKRAATDGRPVPGVEVRIVD-DDGNDVPPGEEGELQVRGPQ 297

Query: 179 MMRG 182
           +  G
Sbjct: 298 LFLG 301

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 83.3 bits (206), Expect = 8e-19
 Identities = 51/170 (30%), Positives = 83/170 (48%), Gaps = 5/170 (2%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIIL--MAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           V    +PLFH+ G+  +  G L  G+  ++  +  FD    L  +E  +VT I++VP   
Sbjct: 218 VGFVGVPLFHIAGIGSMLPG-LLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQW 276

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
            A+      +  DL+ L+++  GAAP    L+ + A   P A ++  +G TE S +  M 
Sbjct: 277 QAVCAEQQARPRDLA-LRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCML 335

Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
                 R +GS G + P V A +V  +    +P  ++GEI  R P +M G
Sbjct: 336 LGEDAIRKLGSVGKVIPTVAARVVD-ENMNDVPVGEVGEIVYRAPTLMSG 384

Length = 542

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 82.3 bits (204), Expect = 2e-18
 Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 12/182 (6%)

Query: 11   ELDYVFLCVLPLFHVFGLAVITCGQLQKG-SCIILMAKFDLEMFLRAIEKHRVTHIWVVP 69
              D V L  LP FH FGL V     L +G   +      D     + + KHR T +   P
Sbjct: 821  RNDDVILSSLPFFHSFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTP 880

Query: 70   PLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIA 129
              +    ++  +     +SL+LV +GA  L  E+ +   +      +++GYG TETS +A
Sbjct: 881  TFLRLYLRNKKLHPLMFASLRLVVAGAEKLKPEVADAFEEKF-GIRILEGYGATETSPVA 939

Query: 130  T--MENSFA-------GSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
            +  + +  A       GS+  GS G   PGV   IV  +T + LPP + G I + GP +M
Sbjct: 940  SVNLPDVLAADFKRQTGSKE-GSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGPQVM 998

Query: 181  RG 182
            +G
Sbjct: 999  KG 1000

Length = 1146

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 81.9 bits (203), Expect = 2e-18
 Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 1/168 (0%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           + L  LPL+H   L V     L  G+  +++   D E+ LR IE  R+T  +  P + ++
Sbjct: 214 IPLHALPLYHCAQLDVFLGPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWIS 273

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           L +H      DLSSL+    GA+ +  E+++E  + +P       YG TE + +AT+   
Sbjct: 274 LLRHPDFDTRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGP 333

Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
               R  GSAG     VE  +V  D    + P ++GEI  R P +M G
Sbjct: 334 EEHLRRPGSAGRPVLNVETRVVD-DDGNDVAPGEVGEIVHRSPQLMLG 380

Length = 523

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 81.1 bits (201), Expect = 4e-18
 Identities = 51/180 (28%), Positives = 83/180 (46%), Gaps = 33/180 (18%)

Query: 13  DYVFLCVLPLFH----VFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVV 68
           D V+L   PL+H     FG++ +  G       +++M KFD E  L  IE++RVTH  +V
Sbjct: 187 DSVYLSPAPLYHTAPLRFGMSALALGGT-----VVVMEKFDAEEALALIERYRVTHSQLV 241

Query: 69  PPL---ILALAKHGLVK-KFDLSSLKLVGSGAAPLGKELMEECAKNVPSA-------TVI 117
           P +   +L L +   V+ ++D+SSL++    AAP        C   V  A        + 
Sbjct: 242 PTMFVRMLKLPEE--VRARYDVSSLRVAIHAAAP--------CPVEVKRAMIDWWGPIIH 291

Query: 118 QGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGP 177
           + Y  +E  G+ T+  S     + GS G    G E  I+  +    LPP ++G ++    
Sbjct: 292 EYYASSEGGGV-TVITSEDWLAHPGSVGKAVLG-EVRILD-EDGNELPPGEIGTVYFEMD 348

Length = 502

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 80.4 bits (199), Expect = 8e-18
 Identities = 51/174 (29%), Positives = 76/174 (43%), Gaps = 26/174 (14%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL--- 71
             L   P+FH  G A +T   +  GS ++L  +FD E  L  I KH+ T + VVP +   
Sbjct: 250 TTLLPAPMFHATGWAHLTLA-MALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSR 308

Query: 72  ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK-------NVPSATVIQGYGLTE 124
           IL L    L  K+D SSLK++    + L  EL     +       N+        YG TE
Sbjct: 309 ILDLGPEVL-AKYDTSSLKIIFVSGSALSPELATRALEAFGPVLYNL--------YGSTE 359

Query: 125 TS--GIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRG 176
            +   IAT E+    +   G+ G    GV   I+  +    +P   +G I++  
Sbjct: 360 VAFATIATPEDL---AEAPGTVGRPPKGVTVKILD-ENGNEVPRGVVGRIFVGN 409

Length = 549

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score = 79.7 bits (197), Expect = 2e-17
 Identities = 50/218 (22%), Positives = 75/218 (34%), Gaps = 69/218 (31%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL--- 71
             L  LPL H+F  A      L     + ++ K D    L  +++ R T +  VP +   
Sbjct: 235 RVLSFLPLAHIFERAFEGGLAL--YGGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEK 292

Query: 72  ------------------ILALAKHGLVKKFDLS-------------------------- 87
                             +   A     KK   +                          
Sbjct: 293 VYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALG 352

Query: 88  -SLKLVGSGAAPLGKELMEECAKNVPSA--TVIQGYGLTETSGIATMENSFAGSRNIGSA 144
             ++   SG APL  EL         S    +++GYGLTETS + ++ N       +G+ 
Sbjct: 353 GRIRYALSGGAPLSPEL----LHFFRSLGIPILEGYGLTETSAVVSV-NPP-DRFVLGTV 406

Query: 145 GALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
           G   PG+E  I              GEI +RGPN+M+G
Sbjct: 407 GKPLPGIEVKIADD-----------GEILVRGPNVMKG 433

Length = 613

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 77.2 bits (191), Expect = 1e-16
 Identities = 51/180 (28%), Positives = 80/180 (44%), Gaps = 26/180 (14%)

Query: 15  VFLCVLPLFHVFG-----LAVITCGQLQKGSCIILMAKF-DLEMFLRAIEKHRVTHIWVV 68
             L V+P+FHV        A +       G+ ++L  ++ D    L  IE+ +VT    V
Sbjct: 207 TVLPVVPMFHVNAWGLPYAATMV------GAKLVLPGRYLDPASLLDLIEEEKVTVSAGV 260

Query: 69  PPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGI 128
           P + L L  +      DLSSL+ V  G + L + L+E+  +      VI  +G+TETS +
Sbjct: 261 PTIWLGLLNYLEANGKDLSSLRRVVVGGSALPRSLIEKLEER--GVEVIHAWGMTETSPL 318

Query: 129 ATMENSFAGSRNIG---------SAGALAPGVEALIVSVDTQKPLPPN--QLGEIWLRGP 177
            T+        ++            G   PGVE  IV  +    LP +   +GE+ +RGP
Sbjct: 319 GTVSRLKPHLVDLPEEEKLELRAKQGRPVPGVELRIVDDEGN-ELPWDGKTVGELVVRGP 377

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 76.6 bits (189), Expect = 2e-16
 Identities = 54/172 (31%), Positives = 80/172 (46%), Gaps = 10/172 (5%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLIL 73
            F+C LPL+H+F L V     ++ G   IL+    D+  F++ ++K++V     V  L  
Sbjct: 254 NFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYN 313

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSAT---VIQGYGLTETSGIAT 130
           AL  +    K D S L +   G    G  +    A+     T   + +GYGL+ETS +AT
Sbjct: 314 ALLNNPDFDKLDFSKLIVANGG----GMAVQRPVAERWLEMTGCPITEGYGLSETSPVAT 369

Query: 131 MENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
             N    +   G+ G   P  E  I   D    LP  + GEI +RGP +M G
Sbjct: 370 C-NPVDATEFSGTIGLPLPSTEVSIRD-DDGNDLPLGEPGEICIRGPQVMAG 419

Length = 557

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score = 76.3 bits (188), Expect = 2e-16
 Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 20/168 (11%)

Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           L  LPL+H+ GL+++    ++  +  I+     L   L  I   RVTHI +VP  +  L 
Sbjct: 156 LLSLPLYHISGLSILFRWLIEGATLRIVDKFNQL---LEMIANERVTHISLVPTQLNRLL 212

Query: 77  KHGLVKKFDLSSLKLVGSGAAPLGKELMEECA-KNVPSATVIQGYGLTET-SGIATMENS 134
             G        +L+ +  G + +   L+EE     +P   +   YG+TET S + T    
Sbjct: 213 DEGGHN----ENLRKILLGGSAIPAPLIEEAQQYGLP---IYLSYGMTETCSQVTTATPE 265

Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
              +R     G    G E  I  VD ++       GEI ++G N+M+G
Sbjct: 266 MLHAR--PDVGRPLAGREIKI-KVDNKE-----GHGEIMVKGANLMKG 305

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 76.2 bits (188), Expect = 2e-16
 Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 4/164 (2%)

Query: 20  LPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKH 78
           LPL+H+F L V     ++ G   +L+    D+  F++ ++K+  T I  V  L  AL  +
Sbjct: 257 LPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNN 316

Query: 79  GLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGS 138
              ++ D SSLKL   G   + + + E   K +    +++GYGLTE S + ++ N +   
Sbjct: 317 EEFQELDFSSLKLSVGGGMAVQQAVAERWVK-LTGQYLLEGYGLTECSPLVSV-NPYDLD 374

Query: 139 RNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
              GS G   P  E  +V  D    +PP + GE+W++GP +M G
Sbjct: 375 YYSGSIGLPVPSTEIKLVD-DDGNEVPPGEPGELWVKGPQVMLG 417

Length = 560

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 75.7 bits (187), Expect = 3e-16
 Identities = 53/210 (25%), Positives = 82/210 (39%), Gaps = 57/210 (27%)

Query: 20  LPLFHVFGL--AVITCGQLQKGSCIILMAKFDLEMF-------LRAIEKHRVTHIWVVPP 70
           LPL+H  GL   ++    L  G  ++LM+      F       L AI ++R T     P 
Sbjct: 196 LPLYHDMGLIGGLLQP--LYAGFPVVLMSPLA---FLRRPLRWLEAISRYRATVSGA-PN 249

Query: 71  LILALAKHGLVKKF--------DLSSLKLVGSGAAPLGKELMEE-CAKNVP---SATVIQ 118
               L     V++         DLSS ++  +GA P+  + +E    +  P         
Sbjct: 250 FAYDLC----VRRVRDEQLAGLDLSSWRVAFNGAEPVRADTLERFAERFAPAGFRPEAFL 305

Query: 119 -GYGLTETSGIATM-------------------------ENSFAGSRNIGSAGALAPGVE 152
             YGL E +   +                              A +R + S G   PG E
Sbjct: 306 PCYGLAEATLAVSGGPPGAGPVVLRVDRDALARGGAAVAAADGAAARELVSCGRPLPGHE 365

Query: 153 ALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
             IV  +T++PLP  ++GEIW+RGP++  G
Sbjct: 366 VRIVDPETRRPLPDGEVGEIWVRGPSVAAG 395

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 75.7 bits (187), Expect = 4e-16
 Identities = 54/170 (31%), Positives = 86/170 (50%), Gaps = 5/170 (2%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D V +  LP+FH  GL V T   L  G+ +I + KFD +  L  +   R T +  VP   
Sbjct: 197 DDVLIHALPIFHTHGLFVATNVALLAGASMIFLPKFDPDAVLALMP--RATVMMGVPTFY 254

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
             L +   + +   + ++L  SG+APL  E   E  +    A +++ YG+TET+   +  
Sbjct: 255 TRLLQEPRLTREAAAHMRLFISGSAPLLAETHREFQERTGHA-ILERYGMTETNMNTS-- 311

Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
           N + G R  G+ G   PGV   +   +T   LPP ++G I ++GPN+ +G
Sbjct: 312 NPYDGERRAGTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKG 361

Length = 504

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 75.6 bits (186), Expect = 4e-16
 Identities = 53/169 (31%), Positives = 86/169 (50%), Gaps = 4/169 (2%)

Query: 15  VFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V +  LPL+H++   A   C  +     +++    D+  F++ + K R + +  +  L +
Sbjct: 260 VMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFV 319

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
           AL  H   K  D S+LKL  SG   L K   E   + +   T+++GYGLTETS +A+  N
Sbjct: 320 ALMDHPGFKDLDFSALKLTNSGGTALVKATAERWEQ-LTGCTIVEGYGLTETSPVAST-N 377

Query: 134 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
            +     +G+ G   PG  AL V  D    LP  + GE+ ++GP +M+G
Sbjct: 378 PYGELARLGTVGIPVPGT-ALKVIDDDGNELPLGERGELCIKGPQVMKG 425

Length = 562

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 75.2 bits (186), Expect = 5e-16
 Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 14/152 (9%)

Query: 39  GSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSG 95
           G+ ++L       D E     + +HR+T + +VP L+ AL      +   L SL+LV  G
Sbjct: 159 GATLVLAPPEVLRDPEALAELLREHRITVLHLVPSLLRALLDAL--EPAALPSLRLVIVG 216

Query: 96  AAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM-----ENSFAGSRNIGSAGALAPG 150
              L  EL+    +  P A ++  YG TET+   T      ++   GS  IG        
Sbjct: 217 GEALPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDPDDLDGGSVPIGRP---IAN 273

Query: 151 VEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
               ++  +  +P+P    GE+++ G  + RG
Sbjct: 274 TRVYVLD-EDLRPVPVGVPGELYIGGAGVARG 304

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 74.9 bits (185), Expect = 5e-16
 Identities = 45/164 (27%), Positives = 69/164 (42%), Gaps = 11/164 (6%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L  LPLFH+   A      L  G+ ++L+ +F    F   + KH  T   ++  +   
Sbjct: 124 VLLTPLPLFHINAQAYSVYAALLVGATLVLLPRFSASRFWDQVRKHGATVFNLLGAMAAI 183

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK--NVPSATVIQGYGLTETSGIATME 132
           L K           L+ V    APL   +     +   V    +++GYG+TET       
Sbjct: 184 LMKQPPSPDDRDHPLRFVFG--APLPAAIWPAFEERFGVK---LVEGYGMTETGVPI--- 235

Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRG 176
            +       GS G   PGVE  IV  D +  +PP ++GE+ +R 
Sbjct: 236 IAPGDPAPPGSCGRPRPGVEVRIVDEDGR-EVPPGEVGELVVRP 278

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 75.1 bits (185), Expect = 6e-16
 Identities = 52/174 (29%), Positives = 76/174 (43%), Gaps = 23/174 (13%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL- 71
           D V+L   PL+H      +     + G  +I+M  FD E +L  IE++ VTH  +VP + 
Sbjct: 200 DMVYLSPAPLYHSAPQRAVMLVI-RLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMF 258

Query: 72  --ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSAT------VI-QGYGL 122
             +L L +  +  K+DLSSL++    AAP        C   V          +I + Y  
Sbjct: 259 SRMLKLPEE-VRDKYDLSSLEVAIHAAAP--------CPPQVKEQMIDWWGPIIHEYYAA 309

Query: 123 TETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRG 176
           TE  G  T  +S     + G+ G    G   L +  D    LPP + G IW  G
Sbjct: 310 TEGLG-FTACDSEEWLAHPGTVGRAMFGD--LHILDDDGAELPPGEPGTIWFEG 360

Length = 511

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 74.5 bits (184), Expect = 8e-16
 Identities = 53/191 (27%), Positives = 83/191 (43%), Gaps = 33/191 (17%)

Query: 10  GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIIL-M-----AKFDLEMFLRAIEKHRVT 63
           GE+D   L   PLF +FG A    G     + +I  M     A  D      AIE++ VT
Sbjct: 215 GEID---LPTFPLFALFGPA---LG----MTSVIPDMDPTRPATVDPAKLFAAIERYGVT 264

Query: 64  HIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPS-ATVIQGYGL 122
           +++  P L+  L ++G      L SL+ V S  AP+   ++E     +P  A ++  YG 
Sbjct: 265 NLFGSPALLERLGRYGEANGIKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGA 324

Query: 123 TETSGIATMENS--FAGSRNIGSAGA------LAPGVEALIVSVDT--------QKPLPP 166
           TE   I+++E+      +R     GA         GVE  I+++             L  
Sbjct: 325 TEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLAT 384

Query: 167 NQLGEIWLRGP 177
            ++GEI + GP
Sbjct: 385 GEIGEIVVAGP 395

Length = 552

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 72.2 bits (178), Expect = 6e-15
 Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 19/154 (12%)

Query: 40  SCIILMAKFDLEMFLRAIEKHRVTHIW-VVPPLILALAKHG--LVKKFDLSSLKLVGSGA 96
           + +I   +F  E + R +E ++VT +W   P  I  L   G  LVKK+DLSSL+ + S  
Sbjct: 274 TNVIDGGRFSPERWYRILEDYKVT-VWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSVG 332

Query: 97  APLGKELMEECAKNVPSATVIQGYGLTETSGI-----ATMENSFAGSRNIGSAGALAPGV 151
            PL  E++      V    +   + +TET GI       M+         GS G   PG+
Sbjct: 333 EPLNPEVV-RWGMKVFGLPIHDNWWMTETGGIMIANYPAMD------IKPGSMGKPLPGI 385

Query: 152 EALIVSVDTQKPLPPNQLGEIWLRG--PNMMRGI 183
           EA IV  D    LPPN++G + ++   P+MMRGI
Sbjct: 386 EAAIVD-DQGNELPPNRMGNLAIKKGWPSMMRGI 418

Length = 570

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 71.3 bits (175), Expect = 1e-14
 Identities = 54/180 (30%), Positives = 80/180 (44%), Gaps = 21/180 (11%)

Query: 13  DYVFLCVLPLFHVFGLAVITC----GQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVV 68
             V+LC LP  H F L+        G    G  ++L      E+    IE+H VT   +V
Sbjct: 230 QTVYLCALPAAHNFPLS---SPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALV 286

Query: 69  PPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGI 128
           PPL     +    ++ DLSSL+L+  G A L   L    A+ VP+     G  L +  G+
Sbjct: 287 PPLASLWLQAAEWERADLSSLRLLQVGGARLSATL----ARRVPAVL---GCQLQQVFGM 339

Query: 129 ATMENSF-----AGSRNIGSAG-ALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
           A    ++          I + G  L+P  E  +V  D   P+ P ++GE+  RGP  +RG
Sbjct: 340 AEGLVNYTRLDDPPEIIIHTQGRPLSPDDEVRVVDADGN-PVAPGEVGELLTRGPYTIRG 398

Length = 542

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 71.2 bits (175), Expect = 1e-14
 Identities = 51/169 (30%), Positives = 86/169 (50%), Gaps = 12/169 (7%)

Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           L V PL H  G+  +   Q+ +G+  +L+   +FD       +E+HRVT+++ VP ++  
Sbjct: 210 LVVAPLSHGAGIHQLC--QVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKM 267

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIAT---- 130
           L +H  V ++D SSL+ V    AP+ +   ++ A       ++Q +GL E +G  T    
Sbjct: 268 LVEHPAVDRYDHSSLRYVIYAGAPMYRA-DQKRALAKLGKVLVQYFGLGEVTGNITVLPP 326

Query: 131 -MENSFAG-SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGP 177
            + ++  G    IG+ G    G+E  I   D  + LPP + GEI + GP
Sbjct: 327 ALHDAEDGPDARIGTCGFERTGMEVQIQD-DEGRELPPGETGEICVIGP 374

Length = 528

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 70.8 bits (174), Expect = 1e-14
 Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 18/167 (10%)

Query: 19  VLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH 78
           +LP  + FG+ V+             M +FD E     + ++ VT+ ++ P  +  + + 
Sbjct: 150 LLPALY-FGVPVVAYR----------MQRFDPERAFALMRRYGVTNAFLPPTALKMMRRV 198

Query: 79  G-LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG 137
           G    ++DL  L+ V SG   LG+EL+E     +   TV + YG TE + +     +  G
Sbjct: 199 GSERARYDLR-LRAVASGGESLGEELLEWARDEL-GLTVNEFYGQTEANLVVG-NCAALG 255

Query: 138 SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPN--MMRG 182
               GS G   PG E  +V  D  +P+PP ++GEI ++ P+  M  G
Sbjct: 256 PARPGSMGKPVPGHEVAVVD-DAGRPVPPGEVGEIAVKRPDPVMFLG 301

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score = 69.9 bits (172), Expect = 3e-14
 Identities = 36/98 (36%), Positives = 47/98 (47%), Gaps = 9/98 (9%)

Query: 89  LKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALA 148
           ++L+ SG APL  +  E   +      V+QGYGLTET    T+  S  G    G  G   
Sbjct: 271 VRLMLSGGAPLSPDTQEFL-RVALGCPVLQGYGLTETCAGGTL--SDPGDTTTGHVGPPL 327

Query: 149 PGVEALIVSVD----TQKPLPPNQLGEIWLRGPNMMRG 182
           P  E  +V V       K  PP   GEI +RGPN+ +G
Sbjct: 328 PCCEIKLVDVPEMGYFAKDDPPR--GEICIRGPNVFKG 363

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 69.6 bits (171), Expect = 3e-14
 Identities = 49/181 (27%), Positives = 81/181 (44%), Gaps = 17/181 (9%)

Query: 6   QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM--AKFDLEMFLRAIEKHRVT 63
           Q  AG     FL   PL H  G  +     L  G  ++L+   KFD +   R +EKHRV 
Sbjct: 51  QVAAGGAGTRFLPACPLMHGAGQWL-ALSALFAGGTVVLLPDDKFDPDRVWRTVEKHRVN 109

Query: 64  HIWVV-----PPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
            + +V      PL+ AL   G   ++DLSSL+ + S  A    E+ +   + +P+  ++ 
Sbjct: 110 TLVIVGDAFARPLLEALEAAG---RYDLSSLRAISSSGAMWSPEVKQGLLELLPNLALVD 166

Query: 119 GYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP--NQLGEIWLRG 176
             G +ET G  +   S + +    + G    G + +++  D    +PP   ++G I   G
Sbjct: 167 ALGASETGGGGS---SVSRAGGASATGKFELGPDTVVLDEDGS-EVPPGSGEVGWIARGG 222

Query: 177 P 177
            
Sbjct: 223 R 223

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 69.6 bits (171), Expect = 4e-14
 Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 13/144 (9%)

Query: 45  MAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELM 104
             + D  +    I +H VT + + P L+  LA         L+SL+LV  G   L   L+
Sbjct: 196 EERDDAALLAALIAEHPVTVLNLTPSLLALLAAAL---PPALASLRLVILGGEALTPALV 252

Query: 105 EECAKNVPSATVIQGYGLTETSGIATM------ENSFAGSRNIGSAGALAPGVEALIVSV 158
           +      P A +I  YG TET+  +T       +        IG            ++  
Sbjct: 253 DRWRARGPGARLINLYGPTETTVWSTATLVDPDDAPRESPVPIGRP---LANTRLYVLD- 308

Query: 159 DTQKPLPPNQLGEIWLRGPNMMRG 182
           D  +P+P   +GE+++ GP + RG
Sbjct: 309 DDLRPVPVGVVGELYIGGPGVARG 332

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 69.0 bits (169), Expect = 7e-14
 Identities = 45/164 (27%), Positives = 80/164 (48%), Gaps = 5/164 (3%)

Query: 20  LPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKH 78
           LPL+H++         +  G+  IL++   DL   ++ + K + +    +  L +AL  +
Sbjct: 258 LPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNN 317

Query: 79  GLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGS 138
              +K D S+LKL  SG   L      E  K V    + +GYG+TETS + ++ N     
Sbjct: 318 EAFRKLDFSALKLTLSGGMALQLA-TAERWKEVTGCAICEGYGMTETSPVVSV-NPSQAI 375

Query: 139 RNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
           + +G+ G   P     ++  D    LP  ++GE+ ++GP +M+G
Sbjct: 376 Q-VGTIGIPVPSTLCKVID-DDGNELPLGEVGELCVKGPQVMKG 417

Length = 562

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 69.0 bits (169), Expect = 8e-14
 Identities = 47/176 (26%), Positives = 71/176 (40%), Gaps = 13/176 (7%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
             V L  LP   VFG + +  G L  G+ ++    FD     RA+ +HRVTH +    ++
Sbjct: 222 GAVLLAALPFCGVFGFSTLL-GALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEML 280

Query: 73  LALAKHGLVKKFDLSSLKLVGSGA-APLGKELMEE-CAKNVPSATVIQGYGLTETSG--- 127
             +      +  D  S +L G  + AP   EL     A+ VP   +   YG +E      
Sbjct: 281 RRILDTAGERA-DFPSARLFGFASFAPALGELAALARARGVPLTGL---YGSSEVQALVA 336

Query: 128 IATMENSFAGSRNIGSAGALA-PGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
           +    +  +     G  G  A P              LP  + GEI +R P++MRG
Sbjct: 337 LQPATDPVSVRIEGG--GRPASPEARVRARDPQDGALLPDGESGEIEIRAPSLMRG 390

Length = 540

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 68.7 bits (168), Expect = 8e-14
 Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 14/175 (8%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHR--VTHIWVVPPLI 72
            FLC  P+FH+ GL       L  G  I++   F+ +  L  +      +TH + VP + 
Sbjct: 178 SFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMA 237

Query: 73  LALAKHGLVKKFDLSSLK----LVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGI 128
            A         FD ++L+    L   GA    ++++      +P   ++ G+G++E   +
Sbjct: 238 QAFRAQ---PGFDAAALRHLTALFTGGAPHAAEDILGWLDDGIP---MVDGFGMSEAGTV 291

Query: 129 ATMENSFAGSRN-IGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
             M       R   G+AG   P V+  +V  D     P    GE+ LRGPN+  G
Sbjct: 292 FGMSVDCDVIRAKAGAAGIPTPTVQTRVVD-DQGNDCPAGVPGELLLRGPNLSPG 345

Length = 488

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 67.6 bits (165), Expect = 2e-13
 Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 4/169 (2%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V +  LPL+H+F L       ++ G C  L++   D+  F++ ++K R T    V  L  
Sbjct: 256 VVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFN 315

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
            L       + D SSLK+   G   + + + E   K V   T+++ YGLTETS  A + N
Sbjct: 316 GLLNTPGFDQIDFSSLKMTLGGGMAVQRSVAERW-KQVTGLTLVEAYGLTETSPAACI-N 373

Query: 134 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
                   GS G   P  +A I   D    L   ++GE+ ++GP +M+G
Sbjct: 374 PLTLKEYNGSIGLPIPSTDACIKD-DAGTVLAIGEIGELCIKGPQVMKG 421

Length = 560

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 66.5 bits (163), Expect = 4e-13
 Identities = 40/156 (25%), Positives = 69/156 (44%), Gaps = 13/156 (8%)

Query: 36  LQKGSCIILMAKFDLEMFL---RAIEKHRVTHIWVVPPLILALAKHGLVKKFD---LSSL 89
           L  G+ + ++ K  +   L     +++H +T  WV  P   +L    L ++ +   L SL
Sbjct: 160 LASGATLYVIPKEQIADPLALFEFLKEHGLTV-WVSVPSFASLLL--LSRELNPESLPSL 216

Query: 90  KLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIAT---MENSFAGSRNIGSAGA 146
           +        L K+L +   +  P+A +I  YG TE +   T   +             G 
Sbjct: 217 RTFLFCGEVLPKKLAKALRRRFPNARIINLYGPTEATVAVTAYEVTPEPLSRNEPLPIGY 276

Query: 147 LAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
             PG+ ALI+  D  +P+PP + GE+ + GP +  G
Sbjct: 277 PKPGLRALILDED-GRPVPPGEEGELVIAGPQVSPG 311

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 65.4 bits (160), Expect = 1e-12
 Identities = 51/191 (26%), Positives = 79/191 (41%), Gaps = 37/191 (19%)

Query: 15  VFLCVLPLFH------VFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVV 68
           V+L  LP+FH       + +  +       G   + + K D       IEKH+VTH+   
Sbjct: 210 VYLWTLPMFHCNGWCFPWAITAV-------GGTHVCLRKVDAPAIYDLIEKHKVTHLCGA 262

Query: 69  PPLILALAKHGLVKKFDLSS-LKLVGSGAAPLGK--ELMEECAKNVPSATVIQGYGLTET 125
           P ++  LA      K  L   ++++ +GA P     + MEE         V   YGLTET
Sbjct: 263 PTVLNMLANAPEADKLPLPRPVRVMTAGAPPPPAVIKKMEELG-----FEVTHVYGLTET 317

Query: 126 SGIATM-------ENSFAGSRNI-----GSAGALAPGVEALIVSVDTQKPLPPN--QLGE 171
            G  T+       +   A  R       G        V+  +V  +T K +P +   +GE
Sbjct: 318 YGPITVCEWKPEWDALPAEERARLKARQGVRYVGLEEVD--VVDPETMKDVPRDGKTIGE 375

Query: 172 IWLRGPNMMRG 182
           I +RG  +M+G
Sbjct: 376 IVMRGNTVMKG 386

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score = 64.2 bits (157), Expect = 3e-12
 Identities = 51/192 (26%), Positives = 82/192 (42%), Gaps = 42/192 (21%)

Query: 16  FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVP------ 69
            L  LPL H+    ++  G L  G+ +  +    L+ F   +++ R T  + VP      
Sbjct: 181 LLSYLPLAHIAERVIVEGGSLYSGAEVFFV--ESLDTFAADLQRARPTVFFSVPRLWTKF 238

Query: 70  -------------------PLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKN 110
                              P++ +L K  ++K   L   +L GSGAAP+   L+    K 
Sbjct: 239 QQGILAKLPPEKLNLLLKIPILSSLVKKKILKGLGLDQARLAGSGAAPMPPALIAWYRK- 297

Query: 111 VPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLG 170
                + +GYG+TE    +T+  ++ G R IG+ G   PGVE  I           ++ G
Sbjct: 298 -LGLPICEGYGMTENFAYSTL--NYPGDRRIGTVGKPIPGVELKI-----------SEDG 343

Query: 171 EIWLRGPNMMRG 182
           EI +R P +M G
Sbjct: 344 EILIRSPGLMSG 355

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 63.2 bits (154), Expect = 6e-12
 Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 5/145 (3%)

Query: 39  GSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAP 98
           G+  +L+  F  +  L  +E+ R T +    P I  L      +  DLS+L+    G   
Sbjct: 254 GARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLSALRFFLCGGTT 313

Query: 99  LGKELMEECAK-NVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVS 157
           + K++  EC +  +   +V   YG TE+S  A +      SR + + G  A GVE  +V 
Sbjct: 314 IPKKVARECQQRGIKLLSV---YGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVD 370

Query: 158 VDTQKPLPPNQLGEIWLRGPNMMRG 182
            + +K LPP   GE   RGPN+  G
Sbjct: 371 -EARKTLPPGCEGEEASRGPNVFMG 394

Length = 547

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 63.4 bits (155), Expect = 6e-12
 Identities = 43/174 (24%), Positives = 68/174 (39%), Gaps = 20/174 (11%)

Query: 15  VFLCVLPLFHVFGL-AVITCGQLQKGSCIIL--MAKFDLEMFLRAIEKHRVTHIWVV--- 68
                 PL H  G  A      L  G  ++L    +FD +   R IE+ +V  I +V   
Sbjct: 221 RRFPAPPLMHGAGQWAAFAA--LFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDA 278

Query: 69  --PPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETS 126
              PL+ AL   G    +DLSSL  + SG A     + E   + +P+  +    G +ET 
Sbjct: 279 MARPLLDALEARG---PYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETG 335

Query: 127 GIATMENSFAGSRNIGSAGA-LAPGVEALIVSVDTQKPLPP--NQLGEIWLRGP 177
              +          + + G     G   +++  D   P+ P   ++G I  RG 
Sbjct: 336 FGGS---GTVAKGAVHTGGPRFTIGPRTVVLDEDGN-PVEPGSGEIGWIARRGH 385

Length = 533

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 63.2 bits (154), Expect = 6e-12
 Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 9/150 (6%)

Query: 42  IILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPL 99
           ++   +FD E +   +E+ +VT  +  P  +  L + G  L  ++DLSSL+ + S   PL
Sbjct: 160 VVDEGEFDAERWYGILEEEKVTVWYTAPTALRMLMRAGPELAARYDLSSLRHIASVGEPL 219

Query: 100 GKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVD 159
             E++    + V    +   +  TET  I          +  GS G   PG+EA ++  D
Sbjct: 220 NPEVV-VWGEKVLGMPIHDTWWQTETGAIMIANYPGIPVKP-GSMGRPLPGIEAAVIERD 277

Query: 160 ---TQKPLPPNQLGEIWLRG--PNMMRGIM 184
                    P Q+GE+ L+   P+M RG +
Sbjct: 278 GDGLTPVTGPGQVGELALKPGWPSMFRGYL 307

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 61.6 bits (150), Expect = 2e-11
 Identities = 53/187 (28%), Positives = 88/187 (47%), Gaps = 19/187 (10%)

Query: 9   AGELDYVFLCVLPLFHV----FGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTH 64
            G  D VFL  LP F +    FGL       L  G+ ++L+A++D   F+ A+E++RVT 
Sbjct: 247 VGGEDSVFLSFLPEFWIAGENFGLLF----PLFSGATLVLLARWDAVAFMAAVERYRVTR 302

Query: 65  IWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECA---KNVPSATVIQG-Y 120
             ++    + L  H    ++DLSSL+ V        K+L  +     + +  + + +  +
Sbjct: 303 TVMLVDNAVELMDHPRFAEYDLSSLRQVR--VVSFVKKLNPDYRQRWRALTGSVLAEAAW 360

Query: 121 GLTETSGIATMENSF-AGSRNIGSA----GALAPGVEALIVSVDTQKPLPPNQLGEIWLR 175
           G+TET    T    F     ++ S     G   PG E  I   +T + LP    GEI +R
Sbjct: 361 GMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELLPLGAEGEIVVR 420

Query: 176 GPNMMRG 182
            P++++G
Sbjct: 421 TPSLLKG 427

Length = 567

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 61.3 bits (149), Expect = 3e-11
 Identities = 50/184 (27%), Positives = 78/184 (42%), Gaps = 17/184 (9%)

Query: 4   MDQETAGELDYVFLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRV 62
           + Q+T       +LC LP  H + L+     G    G C++L            IE+H+V
Sbjct: 220 LTQQT------RYLCALPAAHNYPLSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKV 273

Query: 63  THIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSA---TVIQG 119
           T   +VPP +    +     + DLSSLKL+  G    G +     A+ VP+     + Q 
Sbjct: 274 TVTALVPPAVALWMQAASKSRADLSSLKLLQVG----GAKFSAAAARRVPAVFGCQLQQV 329

Query: 120 YGLTETSGIATMENSFAGSRNIGSAG-ALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPN 178
           +G+ E     T  +  A      + G  ++P  E  +V  D   P+ P + G +  RGP 
Sbjct: 330 FGMAEGLVNYTRLDDPA-EIIFTTQGRPMSPDDEVRVVD-DHGNPVAPGETGMLLTRGPY 387

Query: 179 MMRG 182
             RG
Sbjct: 388 TFRG 391

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 61.1 bits (149), Expect = 3e-11
 Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 13/134 (9%)

Query: 50  LEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK 109
           LE     + + RVT   + P    +L    L+   D+ SL+ +  G     + L++  +K
Sbjct: 177 LEDLAEFLNRLRVTVAHLTP----SLL--ALLDPEDVPSLRTLILGGEACPQALVDRWSK 230

Query: 110 NVPSATVIQGYGLTETSGIATM-ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQ 168
                 ++  YG TE +  AT    +     NIG      P     ++  D +  +P   
Sbjct: 231 PR---RLLNTYGPTEATVTATASRLTPGKPVNIGRP---LPNYTCWVLDPDLEPLVPIGA 284

Query: 169 LGEIWLRGPNMMRG 182
           +GE+ + GP + RG
Sbjct: 285 VGELCIGGPGVARG 298

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 60.7 bits (148), Expect = 5e-11
 Identities = 47/143 (32%), Positives = 62/143 (43%), Gaps = 18/143 (12%)

Query: 53  FLRAIEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKN 110
           F   IEKH+VT  +  P  I AL + G   VKK DLSSL+L+GS   P+  E      K 
Sbjct: 322 FWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSVGEPINPEAWMWYYKV 381

Query: 111 V--PSATVIQGYGLTETSGIATMENSFAGSRNI--GSAGALAPGVEALIVSVDTQKPLPP 166
           V      ++  +  TET GI  M     G+     GSA     G+E  +V  +   P+  
Sbjct: 382 VGKERCPIVDTWWQTETGGI--MITPLPGATPTKPGSATLPFFGIEPAVVD-EEGNPVEG 438

Query: 167 NQLGEI------WLRGPNMMRGI 183
              G        W   P M+R I
Sbjct: 439 PGEGGYLVIKQPW---PGMLRTI 458

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 60.4 bits (147), Expect = 5e-11
 Identities = 48/186 (25%), Positives = 79/186 (42%), Gaps = 51/186 (27%)

Query: 17  LCVLPLF----HVFGLAVITCGQLQKGSCIILMA----------KFDLEMFLRAIEKHRV 62
           LC+LPL     ++ G+       L  G+ +IL+             D   F+ A+ + + 
Sbjct: 157 LCLLPLATLLENIAGVYA----PLLMGATVILVPLAELGLSGSSGLDPAQFVAALSRWQP 212

Query: 63  THIWVVPPLILAL---AKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK-NVPSATVIQ 118
             + +VP L++AL    + G +      SL+ V  G A +   L++      +P   V +
Sbjct: 213 HSLILVPQLLMALVAAVEQGPLP---PESLRFVAVGGARVSPSLLQRARALGLP---VYE 266

Query: 119 GYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQL-----GEIW 173
           GYGL+E + + ++ N+    R  GS G                KPLP  Q+     GEI 
Sbjct: 267 GYGLSECASVVSL-NTPGADR-PGSVG----------------KPLPHVQVSIANDGEIL 308

Query: 174 LRGPNM 179
           +RG  M
Sbjct: 309 VRGSLM 314

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 60.6 bits (147), Expect = 6e-11
 Identities = 52/178 (29%), Positives = 80/178 (44%), Gaps = 16/178 (8%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCII-----LMAKFDLEMFLRAIEKHRVTHIWV 67
           D V +  LP FH +G    T   L  G  ++     L  K  +EM    I++ +VT +  
Sbjct: 224 DDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEM----IDEAKVTFLGS 279

Query: 68  VPPL---ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTE 124
            P     IL  AK    ++  L SL+ V  G       L +E  K  P   + QGYG TE
Sbjct: 280 TPVFFDYILKTAKK---QESCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTE 336

Query: 125 TSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
            S + T+ N+    ++    G    G++ LIVS +T+ P+   + G +  RG ++  G
Sbjct: 337 CSPVITI-NTVNSPKHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSG 393

Length = 539

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 39/133 (29%), Positives = 59/133 (44%), Gaps = 12/133 (9%)

Query: 53  FLRAIEKHRVTHIWVVPPLILALAK---HG-LVKKFDLSSLKLVGSGAAPLGKELME--E 106
           + R IE++ V  ++  P  I A+ K    G  +KK+DLSSL+ +      L    +E  E
Sbjct: 307 YWRVIEEYGVNALFTAPTAIRAIRKQDPDGEYIKKYDLSSLRALFLAGERLDSPTLEWIE 366

Query: 107 CAKNVPSATVIQGYGLTETSG--IATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL 164
               VP   VI  +  TET     A            GS G   PG +  ++  +T + L
Sbjct: 367 KTLGVP---VIDHWWQTETGWPITANCVGLELLPIKPGSPGKPVPGYDVQVLD-ETGEEL 422

Query: 165 PPNQLGEIWLRGP 177
            P +LG I ++ P
Sbjct: 423 GPGELGNIVIKLP 435

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 58.0 bits (140), Expect = 5e-10
 Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 11/173 (6%)

Query: 19  VLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           V+PL+H  GL       L  G  ++L A  +F    F   I+    T    VP +   L 
Sbjct: 223 VMPLYHGHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILL 282

Query: 77  KHGLVKKFDL--SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN- 133
           +    +      ++L+ + S +APL  E   +  +   +A V+  +G+TE +   T    
Sbjct: 283 ERAATEPSGRKPAALRFIRSCSAPLTAE-TAQALQTEFAAPVVCAFGMTEATHQVTTTQI 341

Query: 134 -SFAGSRNIGSAGALAP---GVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
                + N   +  L     G +  IV  D   PLP   +GE+WLRG  ++RG
Sbjct: 342 EGIGQTENPVVSTGLVGRSTGAQIRIVGSDGL-PLPAGAVGEVWLRGTTVVRG 393

Length = 534

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 57.5 bits (139), Expect = 6e-10
 Identities = 52/194 (26%), Positives = 83/194 (42%), Gaps = 32/194 (16%)

Query: 13  DYVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL 71
           D V+L   PL H+ GL+  +    L  G+C +L+ KFD +  L+AI++H VT +  VP +
Sbjct: 213 DDVYLHTAPLCHIGGLSSALA--MLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAM 270

Query: 72  ILALAKHGLVKKFDLS--SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTET-SGI 128
           +  L              S++ + +G   L   L+ +  K  P+A +   YG+TE  S +
Sbjct: 271 MADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSL 330

Query: 129 ATM-------------------ENSFAGSRNIGS-AGALAPGVEALIVSVDTQKPLPPNQ 168
             M                     S +  +  G   G  AP VE  I           ++
Sbjct: 331 TFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKI------GLDESSR 384

Query: 169 LGEIWLRGPNMMRG 182
           +G I  RGP++M G
Sbjct: 385 VGRILTRGPHVMLG 398

Length = 563

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 43/156 (27%), Positives = 67/156 (42%), Gaps = 13/156 (8%)

Query: 34  GQLQKGSCIIL--MAKFDLEMFLRAIEKHRVTHIWVVPPLIL-ALAKHGLVKKFDLSSLK 90
                G+ + +    +FD E  L  +E++ VT  +  PP     L +  L   +D S L+
Sbjct: 143 APWLLGAAVFVYHGRRFDAERTLELLERYGVT-TFCAPPTAYRMLLQQDL-SSYDFSHLR 200

Query: 91  LVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPG 150
            V S   PL  E++ +  +      +  GYG TET     + N        GS G  APG
Sbjct: 201 HVVSAGEPLNPEVI-DWWRAATGLPIRDGYGQTET--GLLVANFPGMEVKPGSMGRPAPG 257

Query: 151 VEALIVSVDTQKPLPPNQLGEIWL----RGPNMMRG 182
               I+  +  + LPP + G+I +    R P + RG
Sbjct: 258 YRVAIIDDEGNE-LPPGEEGDIAVRVKPRPPGLFRG 292

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 55.6 bits (135), Expect = 2e-09
 Identities = 42/142 (29%), Positives = 61/142 (42%), Gaps = 25/142 (17%)

Query: 57  IEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELM---------E 105
           +EK++VT  +  P  I  L + G    KK DLSSL+L+GS   P+  E           E
Sbjct: 315 VEKYKVTIFYTAPTAIRMLMRFGDEWPKKHDLSSLRLLGSVGEPINPEAWMWYYEVIGKE 374

Query: 106 ECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNI--GSAGALAPGVEALIVSVDTQKP 163
            C        ++  +  TET G   M     G+  +  GSA    PGVE  IV  +    
Sbjct: 375 RCP-------IVDTWWQTETGGH--MITPLPGATPLKPGSATRPFPGVEPAIVDEEG-NE 424

Query: 164 LPPNQLGEIWLRG--PNMMRGI 183
           +     G + ++   P M+R I
Sbjct: 425 VEGGVEGYLVIKRPWPGMLRTI 446

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 14/168 (8%)

Query: 20  LPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHG 79
           LPLFHV GL +   G L+ G+  +   +   E + +A+ +   T  + VP +   +A   
Sbjct: 176 LPLFHVHGLVLGVLGPLRIGNRFVHTGRPTPEAYAQALSE-GGTLYFGVPTVWSRIAADP 234

Query: 80  LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSAT---VIQGYGLTETSGIATMENSFA 136
              +  L   +L+ SG+A L   + +  A      T    ++ YG+TET  + T+     
Sbjct: 235 EAAR-ALRGARLLVSGSAALPVPVFDRLAA----LTGHRPVERYGMTET--LITLSTRAD 287

Query: 137 GSRNIGSAGALAPGVEALIVSVDTQKPLP--PNQLGEIWLRGPNMMRG 182
           G R  G  G    GVE  +V  +   P+P     +GE+ +RGP +  G
Sbjct: 288 GERRPGWVGLPLAGVETRLVD-EDGGPVPHDGETVGELQVRGPTLFDG 334

Length = 471

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 55.1 bits (133), Expect = 4e-09
 Identities = 41/165 (24%), Positives = 64/165 (38%), Gaps = 2/165 (1%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D V L   P+ H  G        +  G+  +L   +D       I    VT      P +
Sbjct: 238 DDVILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFL 297

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
             L +        +SSL+      AP+   L+E  A+    A ++  +G+TE   +   +
Sbjct: 298 TDLTRAVKESGRPVSSLRTFLCAGAPIPGALVER-ARAALGAKIVSAWGMTENGAVTLTK 356

Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGP 177
                 R   + G   PGVE  +V  D   PLP  Q+G + +RG 
Sbjct: 357 LDDPDERASTTDGCPLPGVEVRVVDADGA-PLPAGQIGRLQVRGC 400

Length = 547

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 55.4 bits (134), Expect = 4e-09
 Identities = 50/210 (23%), Positives = 78/210 (37%), Gaps = 48/210 (22%)

Query: 15  VFLCVLPLFHVFGL------AVIT-CGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWV 67
           V L  +PL HV G+       V   C Q+   +  IL    D   +L  I+++RVT  W 
Sbjct: 210 VSLNWMPLDHVGGIVMLHLRDVYLGCQQIHVPTDYILA---DPLRWLDLIDRYRVTITWA 266

Query: 68  VPP-----LILALAKHGLVKKFDLSSLKLVGSGA----APLGKELMEECAKNVPSATVIQ 118
             P     L+    +    + +DLSSL+ + +      A   +  +E  A     A  I+
Sbjct: 267 --PNFAFALLNDALERIEDRSWDLSSLRYIINAGEAVVAKTIRRFLELLAPYGLPADAIR 324

Query: 119 -GYGLTETSGIATMENSFAGSRNIG-------------------------SAGALAPGVE 152
             +G++ET    T    F    + G                           G   PGV 
Sbjct: 325 PAFGMSETCSGVTYSRGFRTGPDTGGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVA 384

Query: 153 ALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
             IV  +    LP  ++G + +RGP +  G
Sbjct: 385 IRIVD-EDGALLPEGEVGRLQVRGPTVTSG 413

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score = 55.0 bits (133), Expect = 4e-09
 Identities = 33/96 (34%), Positives = 44/96 (45%), Gaps = 17/96 (17%)

Query: 94  SGAAPLG---KELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPG 150
           SG  PL    +E +     NV    VIQG+GLTET     ++    G     + G L  G
Sbjct: 435 SGGGPLSAATQEFV-----NVVFGMVIQGWGLTETVCCGGIQ--RTGDLEPNAVGQLLKG 487

Query: 151 VEALIVSVD----TQKPLPPNQLGEIWLRGPNMMRG 182
           VE  ++  +    T  P P    GEI LRGP + +G
Sbjct: 488 VEMKLLDTEEYKHTDTPEPR---GEILLRGPFLFKG 520

Length = 700

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 54.7 bits (132), Expect = 4e-09
 Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 9/171 (5%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
                  LF  +GL       L  G+  +L+      E  L  + +HR T ++ VP L  
Sbjct: 135 RIFSSSKLFFAYGLGNSLLFPLFSGASAVLLPGWPTPEAVLDLLARHRPTVLFGVPALYR 194

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK--NVPSATVIQGYGLTETSGIATM 131
           AL + G        S++L  S    L   L E  A+   +    ++ G G TE   I  +
Sbjct: 195 ALLESGAGSAPLFRSVRLCVSAGEALPAGLAERWAEATGIE---ILDGIGSTEVLHI-FI 250

Query: 132 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
            N    +R  G+ G   PG EA +V  ++ + +P   +G++W+RGP++  G
Sbjct: 251 SNRPGAAR-PGTTGRPVPGYEARLVD-ESGREVPAGTVGDLWVRGPSLAPG 299

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 54.0 bits (130), Expect = 1e-08
 Identities = 52/169 (30%), Positives = 78/169 (46%), Gaps = 14/169 (8%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D VF+   PL   FGL  +    L+ G+  +L+ +    + L+AI++HR T ++  P   
Sbjct: 189 DDVFIGSPPLAFTFGLGGLVLFPLRFGASAVLLEQATPPLLLKAIQEHRATILFTAPTAY 248

Query: 73  LALAKHGLVKKFDLSSL-KLVGSGA---APLGKELMEECAKNVPSATVIQGYGLTETSGI 128
            A+     VK FD+SSL K V +G    A + ++  E          +I G G TE   I
Sbjct: 249 RAML--IKVKAFDISSLRKCVSAGETLPAKVWQDWYERTGLK-----IIDGIGATEMLHI 301

Query: 129 ATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGP 177
               N    +   G+ G   PG EA IV  D    +P  + G + +RGP
Sbjct: 302 FISAN--EENAKPGATGKPVPGYEARIVD-DQGNEVPRGEAGRLAVRGP 347

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 20/104 (19%)

Query: 89  LKLVGSGAAPLGKELME---ECAKNVPSATVIQGYGLTETSG-IATMENSFAGSRNIGSA 144
           ++ + SGA+PL  ++ME    C        V++GYG+TETS  I+ M+    G    G  
Sbjct: 378 VRFMSSGASPLSPDVMEFLRICF----GGRVLEGYGMTETSCVISGMD---EGDNLSGHV 430

Query: 145 GALAPGVEALIVSV------DTQKPLPPNQLGEIWLRGPNMMRG 182
           G+  P  E  +V V         +P P    GEI +RGP + +G
Sbjct: 431 GSPNPACEVKLVDVPEMNYTSEDQPYPR---GEICVRGPIIFKG 471

Length = 651

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 9/145 (6%)

Query: 34  GQLQKGSCIIL--MAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL 91
           GQ   G+ + +    KFD +  L  IEK+ VT  +  PP I        + K+DLSSL+ 
Sbjct: 247 GQWIAGAAVFVYDYDKFDPKNLLEKIEKYGVT-TFCAPPTIYRFLIKEDLSKYDLSSLRY 305

Query: 92  VGSGAAPLGKELMEECAKNVPSATVIQGYGLTETS-GIATMENSFAGSRNIGSAGALAPG 150
             +   PL  E+     K      +++G+G TET+  IAT           GS G  +PG
Sbjct: 306 CTTAGEPLNPEVFNT-FKEKTGIKLMEGFGQTETTLTIATFPWMEPKP---GSMGKPSPG 361

Query: 151 VEALIVSVDTQKPLPPNQLGEIWLR 175
            +  I+  D  K     + GEI +R
Sbjct: 362 YDIDIIDPDG-KSCEVGEEGEIVIR 385

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score = 52.9 bits (127), Expect = 2e-08
 Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 14/101 (13%)

Query: 89  LKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSG--IATMENSFAGSRNIGSAGA 146
           ++L+ SGAAPL + + EE  +    + + QGYGLTE+ G    ++ N F+    +G+ G 
Sbjct: 385 VRLLLSGAAPLPRHV-EEFLRVTSCSVLSQGYGLTESCGGCFTSIANVFS---MVGTVGV 440

Query: 147 LAPGVEALIVSV-----DTQKPLPPNQLGEIWLRGPNMMRG 182
               +EA + SV     D    +P    GEI LRG  +  G
Sbjct: 441 PMTTIEARLESVPEMGYDALSDVPR---GEICLRGNTLFSG 478

Length = 660

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 5/162 (3%)

Query: 22  LFHVFGLAVITCGQLQKGSCIILMAKFDL-EMFLRAIEKHRVTHIWVVPPLILALAKHGL 80
           LF  +GL       L  G+  +LM +    +     IE+++ T  + VP L  A+     
Sbjct: 212 LFFAYGLGNGLYFPLSVGATTVLMPERPTPDAVFATIERYKPTVFFGVPTLYAAMLAAPE 271

Query: 81  VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRN 140
             + DLSSL+L  S    L  E+     K +    ++ G G TE   I    ++  G+  
Sbjct: 272 KPERDLSSLRLCVSAGEALPAEIGYRW-KELFGLEILDGIGSTEMLHIFL--SNRPGAVK 328

Query: 141 IGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
            G++G   PG E  +V  D +  +   ++GE+W+RG +   G
Sbjct: 329 YGTSGKPVPGYEVKLVDEDGE-EVADGEIGELWVRGDSSAAG 369

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional

 Score = 52.1 bits (125), Expect = 5e-08
 Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 8/130 (6%)

Query: 53  FLRAIEKHRVTHIWVVPPLILALAKHG-----LVKKFDLSSLKLVGSGAAPLGKELMEEC 107
               IEKH+VTH   +P  I  L K       +  K+DLS+LK +  G   + +E + E 
Sbjct: 341 LWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKYDLSNLKEIWCGGEVI-EESIPEY 399

Query: 108 AKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN 167
            +N       +GYG TE  GI  +      +    + G  +  ++  I+S D  K L  N
Sbjct: 400 IENKLKIKSSRGYGQTE-IGITYLYCYGHINIPYNATGVPSIFIKPSILSEDG-KELNVN 457

Query: 168 QLGEIWLRGP 177
           ++GE+  + P
Sbjct: 458 EIGEVAFKLP 467

Length = 647

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 50.9 bits (123), Expect = 1e-07
 Identities = 49/149 (32%), Positives = 64/149 (42%), Gaps = 39/149 (26%)

Query: 57  IEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAP------------LGKE 102
           I+KH+VT  +  P  I AL K G    KK+DLSSL+L+GS   P            +G E
Sbjct: 335 IDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGE 394

Query: 103 LMEECAKNVP-SATVIQGYGLTETSGIATMENSFAGSRNI--GSAGALAPGVEALIVSVD 159
                    P   T  Q    TET GI  M     G+  +  GSA    PG++  +V  +
Sbjct: 395 -------RCPIVDTWWQ----TETGGI--MITPLPGATPLKPGSATRPLPGIQPAVVD-E 440

Query: 160 TQKPLPPNQLG-----EIWLRGPNMMRGI 183
              PL   + G     + W   P MMR I
Sbjct: 441 EGNPLEGGEGGNLVIKDPW---PGMMRTI 466

Length = 637

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 9/140 (6%)

Query: 39  GSCII--LMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGA 96
           G+C+    + +FD ++ L+ + K+ +T     P +   L +  L   +   SL+   +G 
Sbjct: 242 GACVFVHHLPRFDPKVILQTLSKYPITTFCSAPTVYRMLVQQDL-TSYKFKSLRHCVTGG 300

Query: 97  APLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSR-NIGSAGALAPGVEALI 155
            PL  E++E+  K      + +GYG TET  I     +F G +   GS G  +P  +  I
Sbjct: 301 EPLNPEVLEQW-KAQTGLDLYEGYGQTETGLICA---NFKGMKIKPGSMGKASPPYDVQI 356

Query: 156 VSVDTQKPLPPNQLGEIWLR 175
           +  D    LPP   G+I +R
Sbjct: 357 ID-DNGNVLPPGTEGDIGIR 375

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 37/100 (37%), Positives = 48/100 (48%), Gaps = 12/100 (12%)

Query: 89  LKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM----ENSFAGSRNIGSA 144
           L+L+ SG APL  E+ EE  +    A V+QGYGLTET G  T+    E        +G+ 
Sbjct: 385 LRLLISGGAPLSTEI-EEFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMCM-----LGTV 438

Query: 145 GALAPGVEALIVSVDTQ--KPLPPNQLGEIWLRGPNMMRG 182
           GA A   E  +  V      PL     GEI +RG  +  G
Sbjct: 439 GAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSG 478

Length = 660

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 49.8 bits (119), Expect = 3e-07
 Identities = 47/172 (27%), Positives = 69/172 (40%), Gaps = 26/172 (15%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVV---P 69
           D V    LPLFH   L       L  G+  +L  +F    F  A+ +H  T  +++    
Sbjct: 221 DDVLYTTLPLFHTNALNAFFQALLA-GATYVLEPRFSASGFWPAVRRHGATVTYLLGAMV 279

Query: 70  PLILALAK------HGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLT 123
            ++L+         H +        + L     A L     E          ++ GYG T
Sbjct: 280 SILLSQPARESDRAHRV-------RVALGPGVPAALHAAFRERFG-----VDLLDGYGST 327

Query: 124 ETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLR 175
           ET+ +  +     GS+  GS G LAPG EA +V    Q  LP  + GE+ LR
Sbjct: 328 ETNFVIAVT---HGSQRPGSMGRLAPGFEARVVDEHDQ-ELPDGEPGELLLR 375

Length = 542

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 4/161 (2%)

Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           L VLPL   +G   +T      G+ ++L         L+A+EKH +T +  VPPL   LA
Sbjct: 208 LAVLPLSFDYGFNQLTTAFYV-GATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLA 266

Query: 77  KHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA 136
           +     +    SL+ + +    + +  +      +P+A +   YGLTE      +     
Sbjct: 267 QLDW-PESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPEEV 325

Query: 137 GSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGP 177
             R   S G   P  E L++  D  +   P + GE+  RG 
Sbjct: 326 DRRP-DSIGKAIPNAEVLVLREDGSECA-PGEEGELVHRGA 364

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 48.8 bits (117), Expect = 6e-07
 Identities = 47/140 (33%), Positives = 68/140 (48%), Gaps = 15/140 (10%)

Query: 53  FLRAIEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPLGKE----LMEE 106
             R +E+H+VTH+ + P LI AL  HG   V+  DLSSL+++GS   P   E    L E 
Sbjct: 185 LWRIVERHKVTHLGLSPTLIRALRAHGDAPVEGHDLSSLRVLGSTGEPWDPESWLWLFER 244

Query: 107 -CAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP 165
                 P   +I   G TE SG   + N         S    +PG++A +V  D + P+ 
Sbjct: 245 VGGGRAP---IINYSGGTEISG-GILGNVPIRPIKPCSFNGPSPGMDADVVDEDGR-PVR 299

Query: 166 PNQLGEIWLRGP--NMMRGI 183
             ++GE+ +R P   M RG 
Sbjct: 300 G-EVGELVVRAPWPGMTRGF 318

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 48.8 bits (116), Expect = 6e-07
 Identities = 33/152 (21%), Positives = 60/152 (39%), Gaps = 7/152 (4%)

Query: 36   LQKGSCIILMAK--FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVG 93
            L  G+ +++     +D E     I +HRVT +   P  +  LA+H      +  SL++  
Sbjct: 4757 LINGASVVIRDDSLWDPERLYAEIHEHRVTVLVFPPVYLQQLAEHAERDG-EPPSLRVYC 4815

Query: 94   SGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSA---GALAPG 150
             G   + +   +   + +    +  GYG TET+    +  +  G     +    G     
Sbjct: 4816 FGGEAVAQASYDLAWRALKPVYLFNGYGPTETTVTVLLWKARDGDACGAAYMPIGTPLGN 4875

Query: 151  VEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
                ++      PLP    GE++L G  + RG
Sbjct: 4876 RSGYVLDGQLN-PLPVGVAGELYLGGEGVARG 4906

Length = 5163

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 48.5 bits (116), Expect = 6e-07
 Identities = 51/204 (25%), Positives = 80/204 (39%), Gaps = 46/204 (22%)

Query: 20  LPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRA-------IEKHRVTHIWVVPPLI 72
           LPLFH  G+       +  G+ ++ +   D   FLR        I K+R T +   P   
Sbjct: 201 LPLFHDMGMVGFLTVPMYFGAELVKVTPMD---FLRDPLLWAELISKYRGT-MTAAPNFA 256

Query: 73  LALAKHGLVKK-----FDLSSLKLVGSGAAPLGKELMEECAK-----NVPSATVIQGYGL 122
            AL    L ++     FDLSSL+   +GA P+    +E+         +    ++  YG+
Sbjct: 257 YALLARRLRRQAKPGAFDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGM 316

Query: 123 TETSGIATMENSFAG------------------------SRNIGSAGALAPGVEALIVSV 158
            E +   +     AG                        +R + + G   PG+E  +V  
Sbjct: 317 AEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVDE 376

Query: 159 DTQKPLPPNQLGEIWLRGPNMMRG 182
           D Q  LPP  +G I LRG ++  G
Sbjct: 377 DGQ-VLPPRGVGVIELRGESVTPG 399

Length = 545

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 48.5 bits (116), Expect = 7e-07
 Identities = 54/196 (27%), Positives = 83/196 (42%), Gaps = 31/196 (15%)

Query: 8   TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-----AKFDLEMFLRAIEKHRV 62
             G+ D   L   P F +FG A      L   + I  M     A  D     +AI +   
Sbjct: 124 REGDRD---LAAFPPFALFGPA------LGVTTVIPAMDPTAPAALDPAKLAQAIREIGA 174

Query: 63  THIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNV-PSATVIQGYG 121
           + ++  P L+  +A++       L SL+ V S  AP+  +L+     N+ P A +   YG
Sbjct: 175 SCVFGSPALLKNVARYCEENGIQLPSLRRVLSAGAPVPPDLLRRFVANLMPEAEIHTPYG 234

Query: 122 LTETSGIATMENS--FAGSRNIGSAGA------LAPGVEALIV--------SVDTQKPLP 165
            TE   +A++E     A S     AGA        PG++  I+        S D    LP
Sbjct: 235 ATEALPVASIEGREVLAESAEPPEAGAGVCVGHPVPGIDVRIIPIDDGPIASWDDDIELP 294

Query: 166 PNQLGEIWLRGPNMMR 181
           P ++GEI + GP++ R
Sbjct: 295 PGEVGEIIVSGPHVTR 310

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 48.2 bits (115), Expect = 9e-07
 Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 16/175 (9%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKG---SCIILMA-KFDLEMFLRAIEKHRVTHIWVVPP 70
             + V P+FH +G +     QL      +C I+   +FD E  L  I++HR T + VVP 
Sbjct: 239 PTVIVAPMFHAWGFS-----QLVLAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPV 293

Query: 71  L---ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSG 127
           +   I+ L       ++   SL+   +  + +  +++           +   Y  TE   
Sbjct: 294 MFDRIMDLPAEVR-NRYSGRSLRFAAASGSRMRPDVVIAFMDQFGDV-IYNNYNATEAGM 351

Query: 128 IATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
           IAT            +AG  A G E  I+  D ++ +P  ++G I++R      G
Sbjct: 352 IAT-ATPADLRAAPDTAGRPAEGTEIRILDQDFRE-VPTGEVGTIFVRNDTQFDG 404

Length = 537

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 48.0 bits (114), Expect = 1e-06
 Identities = 30/137 (21%), Positives = 51/137 (37%), Gaps = 4/137 (2%)

Query: 49  DLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEE 106
           D    L  +E   +T + +VP L+  L    L          L+ + SG   L   L++ 
Sbjct: 445 DPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQR 504

Query: 107 CAKNVPSA-TVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP 165
             +    A  ++  YG TE +  A      A   +    G      +  I+     +PLP
Sbjct: 505 LLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILD-QGLRPLP 563

Query: 166 PNQLGEIWLRGPNMMRG 182
               GE+++ G  +  G
Sbjct: 564 LGVPGELYIAGLGLALG 580

Length = 642

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 39/137 (28%), Positives = 57/137 (41%), Gaps = 25/137 (18%)

Query: 55  RAIEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPL----GKELMEECA 108
           R +EK++V  ++  P  I  L K    L++K DLSSL+ +     PL       + E  A
Sbjct: 321 RIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGEPLDEPTASWISE--A 378

Query: 109 KNVPSATVIQGYGLTETS--------GIATMENSFAGSRNIGSAGALAPGVEALIVSVDT 160
             VP   VI  Y  TET         G+             GS G    G    +++  T
Sbjct: 379 LGVP---VIDNYWQTETGWPILAIARGVEDRPTRL------GSPGVPMYGYNVKLLNEVT 429

Query: 161 QKPLPPNQLGEIWLRGP 177
            +P  PN+ G + + GP
Sbjct: 430 GEPCGPNEKGVLVIEGP 446

Length = 629

>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional

 Score = 47.9 bits (115), Expect = 1e-06
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 14/83 (16%)

Query: 23  FHVFGLAVITCGQLQKGSCIILM----AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH 78
           + V GL V        G+ ++L        D  +      +  VT        + A  K 
Sbjct: 321 WLVSGLLV--------GATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKA 372

Query: 79  GLV--KKFDLSSLKLVGSGAAPL 99
           GLV  +  DLS+L+ +GS  +PL
Sbjct: 373 GLVPGETHDLSALRTIGSTGSPL 395

Length = 655

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 12/90 (13%)

Query: 94  SGAAPLGKELMEE-CAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVE 152
           +GAAP+ +E +E   + N+P   +++ YG++ETSG  T+ N    +  + S G   PG E
Sbjct: 325 TGAAPISRETLEFFLSLNIP---IMELYGMSETSGPHTVSNP--QNYRLLSCGKALPGCE 379

Query: 153 ALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
             I + D       + +GEI + G ++  G
Sbjct: 380 TKIHNPDA------DGIGEICIWGRHVFMG 403

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 12/162 (7%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L ++PL+HV G   +    L      +++ +FD    L+ IE+ RVT ++  P  + A
Sbjct: 197 VVLGLMPLYHVIGFFAVLVAALALDGTYVVVEEFDPADALKLIEQERVTSLFATPTHLDA 256

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           LA         L SL+ V    A +   ++E   +++P   V   YG TE      M + 
Sbjct: 257 LAAAAEGAPLKLDSLEHVTFAGATMPDAVLERVNQHLPGEKV-NIYGTTEAMNSLYMRDP 315

Query: 135 FAGSRNIGSAGALAPGV--EALIVSV--DTQKPLPPNQLGEI 172
             G+        + PG   E  IV +     + LP  + GE+
Sbjct: 316 RTGTE-------MRPGFFSEVRIVRIGGSPDEALPNGEEGEL 350

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 36/149 (24%), Positives = 55/149 (36%), Gaps = 4/149 (2%)

Query: 26  FGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL-VKK 83
           +GL     G L  G   + +   F  E     +E+  VT+    P     L   G     
Sbjct: 142 YGLYYAITGPLAMGITTVFLEGGFTAENTYDVLERLGVTNFAGSPTAYRMLMAAGADAAA 201

Query: 84  FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGS 143
                L++  S   PL  E++     N+   T+   YG TET       ++ A     GS
Sbjct: 202 RIKLKLRVASSAGEPLNPEVVRWFQANL-GVTIHDHYGQTETGMPVGNHHALAHEVRAGS 260

Query: 144 AGALAPGVEALIVSVDTQKPLPPNQLGEI 172
            G   PG    ++  D Q PL   + G++
Sbjct: 261 MGLPLPGYRIAVLDDDGQ-PLADGEPGQL 288

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 53/194 (27%), Positives = 84/194 (43%), Gaps = 54/194 (27%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D VF   LP+FH FGL   T G       ++L     +++FL         H  ++P LI
Sbjct: 835 DKVF-NALPVFHSFGL---TGG-------LVLPLLSGVKVFLYP----SPLHYRIIPELI 879

Query: 73  L-----------------ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSAT 115
                             A   H     +D  SL+ V +GA  + +E  +   +      
Sbjct: 880 YDTNATILFGTDTFLNGYARYAHP----YDFRSLRYVFAGAEKVKEETRQTWMEKF-GIR 934

Query: 116 VIQGYGLTETS-GIAT---MENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP-NQLG 170
           +++GYG+TET+  IA    M N        G+ G L PG+E  +       P+P  ++ G
Sbjct: 935 ILEGYGVTETAPVIALNTPMHNKA------GTVGRLLPGIEYRLE------PVPGIDEGG 982

Query: 171 EIWLRGPNMMRGIM 184
            +++RGPN+M G +
Sbjct: 983 RLFVRGPNVMLGYL 996

Length = 1140

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 45.4 bits (108), Expect = 8e-06
 Identities = 44/177 (24%), Positives = 67/177 (37%), Gaps = 38/177 (21%)

Query: 8   TAGELDYVFLCVLPLFH----VFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVT 63
           T  ++ Y     +PLFH    + G A      +  G+ + L AKF    FL  + ++  T
Sbjct: 189 TRDDVCY---VSMPLFHSNAVMAGWAPA----VASGAAVALPAKFSASGFLDDVRRYGAT 241

Query: 64  HI-WVVPPL--ILALAKHG------LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSA 114
           +  +V  PL  ILA  +        L   F        G+ A+P     + E ++     
Sbjct: 242 YFNYVGKPLAYILATPERPDDADNPLRVAF--------GNEASP---RDIAEFSRRF-GC 289

Query: 115 TVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGE 171
            V  GYG +E + I   E         GS G  APGV   I + +T       +   
Sbjct: 290 QVEDGYGSSEGAVIVVREPGTPP----GSIGRGAPGVA--IYNPETLTECAVARFDA 340

Length = 540

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 45.3 bits (108), Expect = 9e-06
 Identities = 51/212 (24%), Positives = 78/212 (36%), Gaps = 51/212 (24%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLR-------AIEKHRVTHIWV 67
           VFL  +PL H  GL          G    LM      +F+R          +HR T I  
Sbjct: 149 VFLSWMPLTHDMGLIGFHLTPTALGINQYLMPT---RLFIRRPLLWLDKASQHRAT-ILS 204

Query: 68  VP----PLILALAKHGLVKKFDLSSLKLVGSGAAP----LGKELMEECAK-NVPSATVIQ 118
            P      +L   K   +  +DLSS++L+ +GA P    L +E +E+ A   +    +  
Sbjct: 205 SPNFGYKYLLKHFKTEKIIDWDLSSVRLIFNGAEPISADLCEEFLEKMAPFGLRPNAMYP 264

Query: 119 GYGLTETSGIAT----------------------------MENSFAGSRNIGSAGALAPG 150
            YGL E +   +                             +NS   + +    G+   G
Sbjct: 265 VYGLAEATLAVSFPKPGEPFKTVCLDRNHLKVGVKIIEIDPKNS--DAISFVEVGSPIDG 322

Query: 151 VEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
            E  IV  D  + LP   +G I ++G N+  G
Sbjct: 323 CEIRIVD-DAGEVLPDRTIGHIQIKGDNVTSG 353

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 45.1 bits (107), Expect = 9e-06
 Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 9/149 (6%)

Query: 39  GSCIILM--AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGA 96
           G+ +  +   +FD   +L A+EK  VT     PP +  +     + ++D+   + V +G 
Sbjct: 151 GATVFGINYPRFDARRYLGALEKFGVTTF-CAPPTVWRMFIQQDLAQYDVRLREAVSAG- 208

Query: 97  APLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIV 156
            PL  E++E   K     T+  GYG TET+  A + NS       GS G   PG    +V
Sbjct: 209 EPLNPEVIER-VKKAWGLTIRDGYGQTETT--AMIGNSPGQKVKPGSMGRPLPGYR--VV 263

Query: 157 SVDTQKPLPPNQLGEIWLRGPNMMRGIML 185
            +D +    P   GEI L   +   G+ML
Sbjct: 264 LLDDEGKEIPVTEGEIALDLGDRPIGLML 292

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 45.3 bits (107), Expect = 1e-05
 Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 3/135 (2%)

Query: 48  FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEEC 107
            D    +  I +  V  +  VP ++ A  +   V     +SL+ +      L  +  E+ 
Sbjct: 733 RDPAKLVELINREGVDTLHFVPSMLQAFLQDEDVA--SCTSLRRIVCSGEALPADAQEQV 790

Query: 108 AKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN 167
              +P A +   YG TE +   T         +    G     +   I+  + + P+P  
Sbjct: 791 FAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGRPIANLACYILDANLE-PVPVG 849

Query: 168 QLGEIWLRGPNMMRG 182
            LGE++L G  + RG
Sbjct: 850 VLGELYLAGRGLARG 864

Length = 5163

>gnl|CDD|224458 COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism]

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 5/97 (5%)

Query: 39  GSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH---GLVKKFDLSSLKLVGSG 95
           G+ +I ++  + E  L  ++  + T I   P  +L LA+      +    L SLK    G
Sbjct: 160 GATVIPISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKL-SLKKGIFG 218

Query: 96  AAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
           A P  +E M +  +N         YGLTE  G    E
Sbjct: 219 AEPWSEE-MRKVIENRFGCKAFDIYGLTEGFGPGAGE 254

Length = 438

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 14/154 (9%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL--- 71
           V    LPL+H   L V     L  G+ + L  KF    F   + ++  T    V  L   
Sbjct: 124 VLYLCLPLYHSNALTVGWSSALAAGASLALRRKFSASQFWPDVRRYGATAFQYVGELCRY 183

Query: 72  ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM 131
           +L   +    +   L   K++G+G  P   ++ +E  +      +++ YG TE  G    
Sbjct: 184 LLNQPEKPDDRDHPLR--KIIGNGLRP---DIWDEFKERFGVPRIVEFYGSTE--GNVGF 236

Query: 132 ENSFAGSRNIGSAGALAPGVEALI-VSVDTQKPL 164
            N F      G+ G L P   A++   V+T++P+
Sbjct: 237 INLF---NKPGAVGRLPPAAIAVVKYDVETEEPI 267

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 49  DLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEE 106
           D ++  R   K  +T        + AL K G+   +  DLSSL+ + S  +PL  E  + 
Sbjct: 316 DPDVLWRLAAKLGITIFGTSAKYLDALEKAGIEPGRTHDLSSLRTILSTGSPLPPEGFDW 375

Query: 107 CAKNV 111
              +V
Sbjct: 376 VYSHV 380

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 43.6 bits (102), Expect = 3e-05
 Identities = 30/118 (25%), Positives = 43/118 (36%), Gaps = 6/118 (5%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI-- 72
           V L V+P+FHV    +     L     ++   + D    +   +   VT    VP +   
Sbjct: 198 VVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLA 257

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIAT 130
           LA        +       +VG  AAP     +           V QGYGLTETS +  
Sbjct: 258 LADYLESTGHRLKTLRRLVVGGSAAP---RSLIAR-FERMGVEVRQGYGLTETSPVVV 311

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 18/40 (45%), Positives = 23/40 (57%)

Query: 143 SAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
           SAG +     A+IV  +T   LP  Q+GEIWL G N+  G
Sbjct: 392 SAGKVGVSEWAVIVDPETASELPDGQIGEIWLHGNNIGTG 431

Length = 631

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 43.4 bits (102), Expect = 4e-05
 Identities = 36/168 (21%), Positives = 62/168 (36%), Gaps = 2/168 (1%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L   P+ H  G        L   +  +L   ++       I +  VT      P +  
Sbjct: 238 VILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTD 297

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           L +        + SL       AP+   L+E  A  +  A ++  +G+TE   +   E  
Sbjct: 298 LCRAVKESGAPVPSLFTFLCAGAPIPGILVER-AWELLGALIVSAWGMTENGAVTVTEPD 356

Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
            A  +   + G   PGVE  ++  +  K L   + G + +RG +   G
Sbjct: 357 DALEKASTTDGRPLPGVEVKVIDANGAK-LSQGETGRLLVRGCSNFGG 403

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 52/190 (27%), Positives = 75/190 (39%), Gaps = 35/190 (18%)

Query: 15  VFLCVLPLFHVFG------LAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVV 68
           V+L  LP+FH  G      +A             + + K D ++    I +H VTH    
Sbjct: 225 VYLWTLPMFHCNGWCFPWTVAAR-------AGTNVCLRKVDPKLIFDLIREHGVTHYCGA 277

Query: 69  PPLILAL--AKHGLVKKFDLSSLKLVGSGAAPLGK--ELMEECAKNVPSATVIQGYGLTE 124
           P ++ AL  A        D     +V  GAAP       MEE   +     +   YGLTE
Sbjct: 278 PIVLSALINAPAEWRAGIDHPVHAMVA-GAAPPAAVIAKMEEIGFD-----LTHVYGLTE 331

Query: 125 TSGIATMENSFAG---------SRNIGSAGALAPGVEALIV-SVDTQKPLPPN--QLGEI 172
           T G AT+               ++     G   P  E + V   DT +P+P +   +GEI
Sbjct: 332 TYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEI 391

Query: 173 WLRGPNMMRG 182
             RG  +M+G
Sbjct: 392 MFRGNIVMKG 401

Length = 545

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 42.8 bits (101), Expect = 6e-05
 Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 39/182 (21%)

Query: 16  FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA- 74
           F+  LPLFH FGL V     L  G+          E+FL         H  +VP L+   
Sbjct: 409 FMSALPLFHSFGLTVGLFTPLLTGA----------EVFLYP----SPLHYRIVPELVYDR 454

Query: 75  -----------LAKHG-LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGL 122
                      L  +      +D + L+ V +GA  L +E  ++  ++     +++GYG+
Sbjct: 455 NCTVLFGTSTFLGNYARFANPYDFARLRYVVAGAEKL-QESTKQLWQDKFGLRILEGYGV 513

Query: 123 TETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP--NQLGEIWLRGPNMM 180
           TE + + ++    A     G+ G + PG++A ++SV       P   Q G + L+GPN+M
Sbjct: 514 TECAPVVSINVPMAA--KPGTVGRILPGMDARLLSV-------PGIEQGGRLQLKGPNIM 564

Query: 181 RG 182
            G
Sbjct: 565 NG 566

Length = 718

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 42.7 bits (100), Expect = 7e-05
 Identities = 41/170 (24%), Positives = 74/170 (43%), Gaps = 23/170 (13%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQK-GSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
           ++    P++H   L    C  +   G  ++L  +FD +  L  +E++R+T   +VP + +
Sbjct: 197 IYYSSAPIYHAAPLR--WCSMVHALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFV 254

Query: 74  ALAK--HGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSAT-------VIQGYGLTE 124
            L K    +  ++D+SSL+ V   AAP        C  +V  A        V + Y  TE
Sbjct: 255 RLLKLDADVRTRYDVSSLRAVIHAAAP--------CPVDVKHAMIDWLGPIVYEYYSSTE 306

Query: 125 TSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWL 174
             G+  +++    +   GS G    G   L +  D    LP  ++G ++ 
Sbjct: 307 AHGMTFIDSPDWLAHP-GSVGRSVLG--DLHICDDDGNELPAGRIGTVYF 353

Length = 501

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 46/188 (24%), Positives = 74/188 (39%), Gaps = 40/188 (21%)

Query: 7   ETAGELDYVFLCVLPLFHV-----FGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHR 61
           + A   D V+L V+P FH+       +A  + G     +  +L+ K+    F   + K+R
Sbjct: 208 QCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAG-----ATFVLLEKYSARAFWGQVCKYR 262

Query: 62  VTHIWVVPPLILALA---------KHGLVKKF---DLSSLKLVGSGAAPLGKELMEECAK 109
            T    +P +I  L          +H L +     +LS  +          K+  EE   
Sbjct: 263 ATITECIPMMIRTLMVQPPSANDRQHCLREVMFYLNLSDQE----------KDAFEERFG 312

Query: 110 NVPSATVIQGYGLTET-SGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQ 168
                 ++  YG+TET  GI    +     R   S G      EA I     + PLP  +
Sbjct: 313 ----VRLLTSYGMTETIVGIIG--DRPGDKRRWPSIGRPGFCYEAEIRDDHNR-PLPAGE 365

Query: 169 LGEIWLRG 176
           +GEI ++G
Sbjct: 366 IGEICIKG 373

Length = 517

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 47/189 (24%), Positives = 79/189 (41%), Gaps = 29/189 (15%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V+L  LP+FH  G    T G   +G   + M         + IE H VTH+  VP +   
Sbjct: 229 VYLWTLPMFHCNGWT-FTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNI 287

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIA----- 129
           L K   +     S    V +G +P    L+++  +      V+  YGLTE +G       
Sbjct: 288 LLKGNSLDLSPRSGPVHVLTGGSPPPAALVKKVQR--LGFQVMHAYGLTEATGPVLFCEW 345

Query: 130 -----------TME-NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN--QLGEIWLR 175
                       ME  +  G   +G A       +  + + +TQ+ +P +   +GEI ++
Sbjct: 346 QDEWNRLPENQQMELKARQGVSILGLA-------DVDVKNKETQESVPRDGKTMGEIVIK 398

Query: 176 GPNMMRGIM 184
           G ++M+G +
Sbjct: 399 GSSIMKGYL 407

Length = 579

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 37/159 (23%), Positives = 63/159 (39%), Gaps = 19/159 (11%)

Query: 34  GQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLK 90
           G L  G  ++L+ K    D +   R I +  VT +W+   L   L          L+ L+
Sbjct: 187 GALLNGGRLVLIDKETLLDPDRLARLIAEQGVTVLWLTAALFNQLVDEDPE---ALAGLR 243

Query: 91  --LVGSGA--APLGKELMEECAKNVPSATVIQGYGLTETSGIAT---MENSFAGSRNIGS 143
             LVG         + ++  C    P   +I GYG TE +  +T   +      + +I  
Sbjct: 244 QLLVGGDVLSPAHVRRVLAAC----PGLRLINGYGPTENTTFSTCHVITRLDEAADSI-P 298

Query: 144 AGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
            G   P     I+  +  +P+P    GE+++ G  +  G
Sbjct: 299 IGRPIPNTTVYILD-EEGQPVPIGVPGELYVGGDGLALG 336

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 33/151 (21%), Positives = 58/151 (38%), Gaps = 6/151 (3%)

Query: 36   LQKGSCIILMAK--FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVG 93
            L  G C+++     +D E   +AI  HR++     P  +   A+       D +SL +  
Sbjct: 3300 LICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAGGA--DCASLDIYV 3357

Query: 94   SGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEA 153
             G   +     E+  + +    +  GYG TE     T+      +        +   V  
Sbjct: 3358 FGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAG 3417

Query: 154  L-IVSVDTQ-KPLPPNQLGEIWLRGPNMMRG 182
              I  +D Q  P+P    GE+++ G  + RG
Sbjct: 3418 RSIYVLDGQLNPVPVGVAGELYIGGVGLARG 3448

Length = 3956

>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 19/40 (47%), Positives = 24/40 (60%)

Query: 143 SAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
           S G +A    A+IV  DT   LP  ++GEIWL G N+ RG
Sbjct: 403 SCGQVARSQWAVIVDPDTGAELPDGEVGEIWLHGDNIGRG 442

Length = 612

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 58/206 (28%), Positives = 90/206 (43%), Gaps = 40/206 (19%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQ---KGSCIILMA-KFDLEMFLR---AIEKHRVTHI 65
           D V +  LPL+H  GL     G LQ    G   +LM+  + LE  LR   AI ++  T I
Sbjct: 209 DDVIVSWLPLYHDMGL---IGGLLQPIFSGVPCVLMSPAYFLERPLRWLEAISEYGGT-I 264

Query: 66  WVVPPLILALAKH----GLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSA-----TV 116
              P     L         +++ DLS  ++  SG+ P+ ++ +E  A+   +      + 
Sbjct: 265 SGGPDFAYRLCSERVSESALERLDLSRWRVAYSGSEPIRQDSLERFAEKFAACGFDPDSF 324

Query: 117 IQGYGLTETS----------GIATME-NSFAGSRN---------IGSAGALAPGVEALIV 156
              YGL E +          GI  +E ++ A +RN         + S G   PG   LIV
Sbjct: 325 FASYGLAEATLFVSGGRRGQGIPALELDAEALARNRAEPGTGSVLMSCGRSQPGHAVLIV 384

Query: 157 SVDTQKPLPPNQLGEIWLRGPNMMRG 182
              + + L  N++GEIW  GP++  G
Sbjct: 385 DPQSLEVLGDNRVGEIWASGPSIAHG 410

Length = 4334

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 42/183 (22%), Positives = 66/183 (36%), Gaps = 9/183 (4%)

Query: 3   TMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIE 58
           +M          V      +  V G + I    L  G+  +L        D  ++   +E
Sbjct: 264 SMWAIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVE 323

Query: 59  KHRVTHIWVVPPLILALAKH--GLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATV 116
           ++ V  ++  P  I  L K     ++K DLSSL  +     PL  E       +     V
Sbjct: 324 RYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLAGEPL-DEPTAHWITDGLGKPV 382

Query: 117 IQGYGLTETSG--IATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWL 174
           I  Y  TET    +A M         +GS G    G    ++   T +P  PN+ G + +
Sbjct: 383 IDNYWQTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNEKGVLTV 442

Query: 175 RGP 177
             P
Sbjct: 443 VPP 445

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score = 39.6 bits (92), Expect = 7e-04
 Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 20/143 (13%)

Query: 63  THIWVVP---PLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQG 119
           +H+   P    L+    K GL       +++++ SGAAPL   + E   + V    V+QG
Sbjct: 364 SHVEASPLCDKLVFNKVKQGLG-----GNVRIILSGAAPLASHV-ESFLRVVACCHVLQG 417

Query: 120 YGLTETSG--IATMENSFAGSRNIGSAGALAPGVEALIVSVDTQK--PLPPNQLGEIWLR 175
           YGLTE+      ++ +       +G+ G   P V+  + SV   +   L     GEI +R
Sbjct: 418 YGLTESCAGTFVSLPDELD---MLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIR 474

Query: 176 GPNMMRGIM----LIASIILSSW 194
           G  +  G      L   +++  W
Sbjct: 475 GKTLFSGYYKREDLTKEVLIDGW 497

Length = 666

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 37/151 (24%), Positives = 63/151 (41%), Gaps = 21/151 (13%)

Query: 39  GSCIIL----MAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGS 94
           G  ++L    +A  DL        K  VT I  VP     L +H  +     SS++ V  
Sbjct: 171 GGRVVLADNALALPDLP------AKAEVTLINTVPSAARELLRHDALP----SSVRTVNL 220

Query: 95  GAAPLGKELMEECAKNVPSATVIQGYGLTETSGIAT---MENSFAGSRNIGSAGALAPGV 151
              PL +EL++          V   YG +E +  +T   +E   + + +IG       G 
Sbjct: 221 AGEPLPQELVQRLYALPQVERVYNLYGPSEDTTYSTYAEVEPGASRTPSIGRP---LAGT 277

Query: 152 EALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
           +A ++     +P+P    GE+++ G  + RG
Sbjct: 278 QAYVLD-AHLQPVPVGVPGELYIGGAGVARG 307

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 39.5 bits (93), Expect = 8e-04
 Identities = 16/51 (31%), Positives = 22/51 (43%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHI 65
           V  C LPL+H  G  V     L  G+ + L  KF    F   + ++R T  
Sbjct: 242 VLYCCLPLYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAF 292

Length = 600

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 41/154 (26%), Positives = 63/154 (40%), Gaps = 8/154 (5%)

Query: 34  GQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLK 90
           G L  G+ + L+      D E F   +    VT + +VP  + AL +   V         
Sbjct: 717 GALASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASRVAL-PRPQRA 775

Query: 91  LVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETS-GIATMENSFAGSRNIGSA-GALA 148
           LV  G A L  +L+       P A +I  YG TET+ G++T E S           G   
Sbjct: 776 LVCGGEA-LQVDLLARVRALGPGARLINHYGPTETTVGVSTYELSDEERDFGNVPIGQPL 834

Query: 149 PGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
             +   I+      P+P   +GE+++ G  + RG
Sbjct: 835 ANLGLYILDHYLN-PVPVGVVGELYIGGAGLARG 867

Length = 3956

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 37.9 bits (89), Expect = 0.002
 Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 29/124 (23%)

Query: 71  LILALAK-HGLVKKFDLSSLKLVGSGAAPLGKEL--------MEECAKNVPSATVIQGYG 121
           L+ AL +   L ++F  S LKL+    A L +++           C + +   T   G G
Sbjct: 318 LVPALERDAALRRRF-FSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMT---GLG 373

Query: 122 LTETSGIATM---ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPN 178
           +TET+  AT      S AG  NI   G  APG E  +V V  +         E+ ++GPN
Sbjct: 374 MTETAPSATFTTGPLSRAG--NI---GLPAPGCEVKLVPVGGKL--------EVRVKGPN 420

Query: 179 MMRG 182
           +  G
Sbjct: 421 VTPG 424

Length = 614

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 38.0 bits (88), Expect = 0.003
 Identities = 33/141 (23%), Positives = 49/141 (34%), Gaps = 13/141 (9%)

Query: 49   DLEMFLRAIEKHRVTHIWVVPPLIL-ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEEC 107
            D E     +E+H VT I   PP+ L  LA+H        +       G A +    +   
Sbjct: 2224 DPEQLYDEMERHGVT-ILDFPPVYLQQLAEHAERDGRPPAVRVYCFGGEA-VPAASLRLA 2281

Query: 108  AKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAP------GVEALIVSVDTQ 161
             + +    +  GYG TE      +   +          A  P         A I+  D  
Sbjct: 2282 WEALRPVYLFNGYGPTEAVVTPLL---WKCRPQDPCGAAYVPIGRALGNRRAYILDADLN 2338

Query: 162  KPLPPNQLGEIWLRGPNMMRG 182
              L P   GE++L G  + RG
Sbjct: 2339 -LLAPGMAGELYLGGEGLARG 2358

Length = 5163

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 16/108 (14%)

Query: 80  LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSAT-----VIQGYGLTETSGIATMENS 134
           L + F   +L+L+  G A L  +L E         T        GYG TET+   T   +
Sbjct: 340 LRRSF-FKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTT--GT 396

Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
              +  +G  G   PGVE         K  P     E+ ++GPN+  G
Sbjct: 397 HWDTERVGLIGLPLPGVEL--------KLAPVGDKYEVRVKGPNVTPG 436

Length = 624

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 37.1 bits (86), Expect = 0.004
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 39  GSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAP 98
           G  + LM KF     L  +E   ++ ++ VP ++ +L K     +   + +K++ SGA  
Sbjct: 209 GQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYK---ENRVIENKMKIISSGAK- 264

Query: 99  LGKELMEECAKNVPSATVIQGYGLTETSGIA 129
              E  E+     P A + + YG +E S + 
Sbjct: 265 WEAEAKEKIKNIFPYAKLYEFYGASELSFVT 295

Length = 487

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	204
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	99.98
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	99.98
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	99.98
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.98
PLN02654	666	acetate-CoA ligase	99.98
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	99.98
PRK06145	497	acyl-CoA synthetase; Validated	99.98
PRK08315	559	AMP-binding domain protein; Validated	99.98
PRK06839	496	acyl-CoA synthetase; Validated	99.98
PLN02736	651	long-chain acyl-CoA synthetase	99.97
PRK07788	549	acyl-CoA synthetase; Validated	99.97
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	99.97
PLN02861	660	long-chain-fatty-acid-CoA ligase	99.97
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	99.97
PRK04319	570	acetyl-CoA synthetase; Provisional	99.97
PRK08316	523	acyl-CoA synthetase; Validated	99.97
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	99.97
PLN02330	546	4-coumarate--CoA ligase-like 1	99.97
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	99.97
PRK07514	504	malonyl-CoA synthase; Validated	99.97
PRK00174	637	acetyl-CoA synthetase; Provisional	99.97
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	99.97
PRK07529	632	AMP-binding domain protein; Validated	99.97
PRK12583	558	acyl-CoA synthetase; Provisional	99.97
PRK07638	487	acyl-CoA synthetase; Validated	99.97
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	99.97
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	99.97
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	99.97
PTZ00237	647	acetyl-CoA synthetase; Provisional	99.97
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	99.97
PRK07787	471	acyl-CoA synthetase; Validated	99.97
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	99.97
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	99.97
PRK09088	488	acyl-CoA synthetase; Validated	99.97
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	99.97
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	99.97
PRK10946	536	entE enterobactin synthase subunit E; Provisional	99.97
PRK08180	614	feruloyl-CoA synthase; Reviewed	99.97
PRK06060	705	acyl-CoA synthetase; Validated	99.97
PRK06188	524	acyl-CoA synthetase; Validated	99.97
PRK09274	552	peptide synthase; Provisional	99.97
PLN03051	499	acyl-activating enzyme; Provisional	99.97
PRK06164	540	acyl-CoA synthetase; Validated	99.97
PRK12467	3956	peptide synthase; Provisional	99.97
PRK13382	537	acyl-CoA synthetase; Provisional	99.97
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	99.97
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	99.96
PRK05852	534	acyl-CoA synthetase; Validated	99.96
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	99.96
PRK12316	5163	peptide synthase; Provisional	99.96
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	99.96
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	99.96
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	99.96
PRK13390	501	acyl-CoA synthetase; Provisional	99.96
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	99.96
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	99.96
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	99.96
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	99.96
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	99.96
PTZ00216	700	acyl-CoA synthetase; Provisional	99.96
PRK06178	567	acyl-CoA synthetase; Validated	99.96
PLN02430	660	long-chain-fatty-acid-CoA ligase	99.96
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	99.96
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	99.96
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	99.96
PRK05857	540	acyl-CoA synthetase; Validated	99.96
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	99.96
PRK12582	624	acyl-CoA synthetase; Provisional	99.96
PRK12316	5163	peptide synthase; Provisional	99.96
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	99.96
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	99.96
PRK13383	516	acyl-CoA synthetase; Provisional	99.96
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	99.96
PRK07470	528	acyl-CoA synthetase; Validated	99.96
PRK12467	3956	peptide synthase; Provisional	99.96
PRK13391	511	acyl-CoA synthetase; Provisional	99.96
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	99.96
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	99.96
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	99.96
PRK05691	4334	peptide synthase; Validated	99.96
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.95
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	99.95
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	99.95
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	99.95
PRK05691	4334	peptide synthase; Validated	99.95
PRK07867	529	acyl-CoA synthetase; Validated	99.95
PRK06018	542	putative acyl-CoA synthetase; Provisional	99.94
PRK13388	540	acyl-CoA synthetase; Provisional	99.94
PLN02479	567	acetate-CoA ligase	99.94
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	99.94
PRK05850	578	acyl-CoA synthetase; Validated	99.94
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.94
PLN03102	579	acyl-activating enzyme; Provisional	99.94
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	99.93
PRK09192	579	acyl-CoA synthetase; Validated	99.93
PRK07868	994	acyl-CoA synthetase; Validated	99.93
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	99.93
PLN03052	728	acetate--CoA ligase; Provisional	99.93
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	99.92
PRK08162	545	acyl-CoA synthetase; Validated	99.92
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	99.92
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	99.92
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	99.92
PRK07798	533	acyl-CoA synthetase; Validated	99.92
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	99.91
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	99.9
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	99.88
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	99.87
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.86
PRK08308	414	acyl-CoA synthetase; Validated	99.86
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	99.84
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.78
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.63
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.62
PTZ00297	1452	pantothenate kinase; Provisional	99.5
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	98.86
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	98.77
KOG3628	1363	consensus Predicted AMP-binding protein [General f	98.49
KOG3628	1363	consensus Predicted AMP-binding protein [General f	98.43
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	97.83
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	97.09
PLN02736	651	long-chain acyl-CoA synthetase	86.33
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	86.28
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	84.61
PTZ00342	746	acyl-CoA synthetase; Provisional	84.34
PTZ00237	647	acetyl-CoA synthetase; Provisional	81.19
PLN03102	579	acyl-activating enzyme; Provisional	80.12
PRK04319	570	acetyl-CoA synthetase; Provisional	80.02

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1.8e-38  Score=262.91  Aligned_cols=195  Identities=42%  Similarity=0.676  Sum_probs=179.0

Q ss_pred             cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCC
Q 028779            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (204)
Q Consensus         7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l   86 (204)
                      .+.....|+.++.+|++|++|+...+.+.+..|.++++...+++..+++.+++|++|++.++|+++..|++.+.....++
T Consensus       219 ~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~~~~~l  298 (537)
T KOG1176|consen  219 GWELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPIVKKYDL  298 (537)
T ss_pred             cccCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCccCcccC
Confidence            35666789999999999999999966567777777777788999999999999999999999999999999987788999


Q ss_pred             ccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCCC
Q 028779           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP  166 (204)
Q Consensus        87 ~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~~  166 (204)
                      +++|.+.+||+++++++.+++++++|...+.+.||+||+++..+.....+. .+.+++|++++++++++.+ ++|+.+++
T Consensus       299 ~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e-~k~~svG~~~~g~~~~v~~-e~g~~l~~  376 (537)
T KOG1176|consen  299 SSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPE-RKPGSVGRLLPGVRVKVLD-ETGVSLGP  376 (537)
T ss_pred             CccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCcc-CcccccCccccceEEEeeC-CCCCCCCC
Confidence            999999999999999999999999988999999999999987777655554 6899999999999988888 99999999


Q ss_pred             CCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          167 NQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       167 g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      ++.|||++||+.++.|||++|++|+++|+.+||||||
T Consensus       377 ~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TG  413 (537)
T KOG1176|consen  377 NQTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTG  413 (537)
T ss_pred             CCceEEEEECcccchhhcCChHHHHhhcccCCccccC
Confidence            9999999999999999999999999999977999997

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.9e-35  Score=248.91  Aligned_cols=197  Identities=37%  Similarity=0.512  Sum_probs=174.6

Q ss_pred             cccc--CCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC--CCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCC
Q 028779            6 QETA--GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV   81 (204)
Q Consensus         6 ~~~~--~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~   81 (204)
                      ..++  ++++|++++++|++|++|+...++.+++.|+++++.+  ++++..++..+.++++|++.++|+++..|++.+..
T Consensus       205 ~~~~~~~~~~d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~  284 (534)
T COG0318         205 AALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEK  284 (534)
T ss_pred             HHhcccCCCCceEEEecChHHHHHHHHHHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCcc
Confidence            4455  8899999999999999999997888899999999997  59999999999999999999999999999998877


Q ss_pred             CCCCCcc-ceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCC
Q 028779           82 KKFDLSS-LKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDT  160 (204)
Q Consensus        82 ~~~~l~~-lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~  160 (204)
                      ...++.+ +|.++.||+++++++++++++.|+..++.+.||+||++..++...........+++|+|+|+++++|+|+++
T Consensus       285 ~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd~~~  364 (534)
T COG0318         285 DDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDG  364 (534)
T ss_pred             CccccccceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecCCCchhhhcCCcccccCCCcEEEEEeCCC
Confidence            7766666 999999999999999999999997678999999999998776654433113566779999999999999776


Q ss_pred             CCCCCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          161 QKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       161 ~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      +++++ |++|||+++||+++.|||++|+.|.++|..+||||||
T Consensus       365 ~~~~p-g~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TG  406 (534)
T COG0318         365 GEVLP-GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTG  406 (534)
T ss_pred             CccCC-CCceEEEEECchhhhhhcCChHHHHHhhccCCeeeec
Confidence            66666 9999999999999999999999999988856999998

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=1.1e-35  Score=235.39  Aligned_cols=198  Identities=25%  Similarity=0.305  Sum_probs=182.4

Q ss_pred             cccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEc-CCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCC
Q 028779            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (204)
Q Consensus         5 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~   83 (204)
                      ...+++.+++|+.++.|++|++|+...++++|..|+|++++ +.|++.+.+++|.++++|+++++|+|+..|++.+....
T Consensus       267 g~r~g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~  346 (596)
T KOG1177|consen  267 GARAGYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQ  346 (596)
T ss_pred             HHHhCcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhcc
Confidence            45577888899999999999999999899999999999996 67999999999999999999999999999999999999


Q ss_pred             CCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCC-CCCCCCccccCCCceEEEEeCCCCC
Q 028779           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG-SRNIGSAGALAPGVEALIVSVDTQK  162 (204)
Q Consensus        84 ~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~-~~~~~~~G~p~~~~~v~v~d~~~~~  162 (204)
                      .+++++|.++.+|+++|+++++.+.....=..+...||+||++...++...++. .....++|..+++.+..++| +.|.
T Consensus       347 ~~~s~lr~~vigGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~  425 (596)
T KOG1177|consen  347 VDLSSLRKGVIGGAPVSPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVD-KDGS  425 (596)
T ss_pred             CchhhhhhheeCCCCCCHHHHHHHHHhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhccccccccccc-CCCC
Confidence            999999999999999999999999997644558899999999988777655543 55677999999999999999 9999


Q ss_pred             CCCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          163 PLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       163 ~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      .++-|..|||++||++.|.|||+++++|+++...|.|++||
T Consensus       426 ~v~~~~~Gel~iRGY~tMl~Ywg~~~kT~eti~~drW~~TG  466 (596)
T KOG1177|consen  426 EVPLGTKGELLIRGYSTMLGYWGEEEKTKETIGNDRWYDTG  466 (596)
T ss_pred             ccccCCCceEEEEechhheeecCCcccchhhcccccceecC
Confidence            99999999999999999999999999999999999999997

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=1.2e-33  Score=239.34  Aligned_cols=192  Identities=34%  Similarity=0.601  Sum_probs=171.4

Q ss_pred             CCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCC-CCCCCccce
Q 028779           12 LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV-KKFDLSSLK   90 (204)
Q Consensus        12 ~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~-~~~~l~~lr   90 (204)
                      .+++++..+|++|++++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..|++.... ...+++++|
T Consensus       243 ~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~lr  322 (560)
T PLN02574        243 SDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLKSLK  322 (560)
T ss_pred             CCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccccCccccce
Confidence            5789999999999999988778888999999999999999999999999999999999999999887543 345688999


Q ss_pred             eeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCCCcc
Q 028779           91 LVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLG  170 (204)
Q Consensus        91 ~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~~g~~G  170 (204)
                      .++++|+++++++++++.+.++++.+++.||+||++.+.+............++|+|+++++++|+|+++++++++|+.|
T Consensus       323 ~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~~g~~G  402 (560)
T PLN02574        323 QVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCG  402 (560)
T ss_pred             EEEEecccCCHHHHHHHHHHCCCCcEEecccccccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcCCCCCCCe
Confidence            99999999999999999999988999999999999876543222222245678999999999999998899999999999


Q ss_pred             eEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          171 EIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       171 el~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      ||+++|++++.|||++++.+.+.|..+||||||
T Consensus       403 ei~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TG  435 (560)
T PLN02574        403 ELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTG  435 (560)
T ss_pred             EEEEECcchhhhhcCChhHhhhhccCCCCcccc
Confidence            999999999999999999999999889999997

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=1.1e-33  Score=238.63  Aligned_cols=197  Identities=23%  Similarity=0.286  Sum_probs=171.0

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCC
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~   84 (204)
                      ..++++++|++++++|++|++++...++.++..|+++++.+ .+++..+++.|+++++|++.++|++++.|++.......
T Consensus       217 ~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  296 (539)
T PRK06334        217 KFFSPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQES  296 (539)
T ss_pred             HhcCCCCCceEEEecchHhhhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhccc
Confidence            35678889999999999999999876788999999998875 57999999999999999999999999999887655556


Q ss_pred             CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 028779           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL  164 (204)
Q Consensus        85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~  164 (204)
                      ++++||.+++||+++++++.+++++.++++.+++.||+||++.+++...... .....++|+|+++++++|+|+++++++
T Consensus       297 ~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~-~~~~~~vG~p~~g~~v~i~d~~~~~~~  375 (539)
T PRK06334        297 CLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITINTVNS-PKHESCVGMPIRGMDVLIVSEETKVPV  375 (539)
T ss_pred             ccccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEeccCCC-CCCCCcCceecCCCEEEEEcCCCCccC
Confidence            7889999999999999999999999998899999999999987765543222 234567999999999999997788999


Q ss_pred             CCCCcceEEEecCCcchhhcCCcccccccc-chhhhcccc
Q 028779          165 PPNQLGEIWLRGPNMMRGIMLIASIILSSW-GFRKIMHSF  203 (204)
Q Consensus       165 ~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~-~~~gw~~~~  203 (204)
                      ++|+.|||+++|++++.|||++++.+.... ..+||||||
T Consensus       376 ~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TG  415 (539)
T PRK06334        376 SSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTG  415 (539)
T ss_pred             CCCceEEEEEecCcccccccCCcccccceeeCCceeEECC
Confidence            999999999999999999999998764322 346899997

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=4.2e-34  Score=233.75  Aligned_cols=190  Identities=35%  Similarity=0.483  Sum_probs=164.9

Q ss_pred             cEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCC---HHHHHHHHHhcCceEEEechHHHHHHHhCCCCC----CCCC
Q 028779           14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFD---LEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK----KFDL   86 (204)
Q Consensus        14 d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~---~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~----~~~l   86 (204)
                      |++++.+|++|.+++...++.++..|+++++.+..+   +..+++.++++++|++.++|+++..+++..+.+    ..++
T Consensus       197 d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l  276 (417)
T PF00501_consen  197 DRILSFLPLSHIFGLISALLAALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDL  276 (417)
T ss_dssp             TEEEESS-TTSHHHHHHHHHHHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTG
T ss_pred             ceEEeeccccccccccccccccccccccccccccccccccccchhccccccccccccccccccccccccccccccccccc
Confidence            699999999999999666999999999999998754   577899999999999999999999999843222    3578


Q ss_pred             ccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCCC
Q 028779           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP  166 (204)
Q Consensus        87 ~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~~  166 (204)
                      ++||.++++|+++++++.+++++.++.+++++.||+||++.++.............++|.|+|+++++|+|+++++++++
T Consensus       277 ~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~  356 (417)
T PF00501_consen  277 SSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIATIRPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEPLPP  356 (417)
T ss_dssp             TT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEEEEETTTHHSSTTSEBEESTTEEEEEECTTTSSBEST
T ss_pred             ccccccccccccCChhhccccccccccccceecccccccceeeecccccccccccccccccccccccccccccccccccc
Confidence            89999999999999999999999997669999999999999987553222234677899999999999999777999999


Q ss_pred             CCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          167 NQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       167 g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      |+.|||+++||+++.||+++++.+++.|..+||||||
T Consensus       357 g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TG  393 (417)
T PF00501_consen  357 GEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTG  393 (417)
T ss_dssp             TSEEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEE
T ss_pred             cccccccccCCccceeeeccccccccccccccceecc
Confidence            9999999999999999999999999999855899997

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=3.2e-32  Score=229.55  Aligned_cols=197  Identities=38%  Similarity=0.588  Sum_probs=176.1

Q ss_pred             cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCC
Q 028779            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (204)
Q Consensus         7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l   86 (204)
                      .++++++|++++.+|++|++++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..|++.+.....++
T Consensus       218 ~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~  297 (537)
T PLN02246        218 NLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYDL  297 (537)
T ss_pred             ccCCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccccccCc
Confidence            46788999999999999999998778889999999999999999999999999999999999999999988766555677


Q ss_pred             ccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCC---CCCCCCCCCccccCCCceEEEEeCCCCCC
Q 028779           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS---FAGSRNIGSAGALAPGVEALIVSVDTQKP  163 (204)
Q Consensus        87 ~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~---~~~~~~~~~~G~p~~~~~v~v~d~~~~~~  163 (204)
                      +++|.++++|+++++++.+++++.+++..+++.||+||++.+++....   .......+++|+|+++++++++|++++++
T Consensus       298 ~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~  377 (537)
T PLN02246        298 SSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGAS  377 (537)
T ss_pred             cceeEEEEecCcCCHHHHHHHHHHcCCCeEeccccccccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCCc
Confidence            899999999999999999999999988999999999999876543211   11123456899999999999999888999


Q ss_pred             CCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          164 LPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       164 ~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      ++.|+.|||+++|++++.|||++++.+++.+..+|||||+
T Consensus       378 ~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~~~TG  417 (537)
T PLN02246        378 LPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTG  417 (537)
T ss_pred             CCCCCceEEEEECCchhccccCCchhhhhcccCCCCeeec
Confidence            9999999999999999999999999999998888999997

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=1.6e-32  Score=226.56  Aligned_cols=191  Identities=26%  Similarity=0.276  Sum_probs=170.8

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC--C-CHHHHHHHHHhcCceEEEechHHHHHHHhCCCCC
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--F-DLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK   82 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~--~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~   82 (204)
                      ..+.+.++|++.+..++.|+.|....++++|.+|+|+++.+.  + ++++++++|+++++|.++.+|+.+++|++....+
T Consensus       206 ~~~~~~~~Dv~w~~ad~GW~~g~~~~v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~~~  285 (528)
T COG0365         206 FHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGE  285 (528)
T ss_pred             HhhCCCCCCEEEeCCCchhhhCchHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCCcc
Confidence            457788999999999999999999999999999999999853  2 4999999999999999999999999999987777


Q ss_pred             CCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCC
Q 028779           83 KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQK  162 (204)
Q Consensus        83 ~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~  162 (204)
                      +.++++||.+.+.|||++++.++++.+.+ ++++.+.||+||++.+.....+   ..+.++.|.|+||++++++| ++|+
T Consensus       286 ~~dlssLr~~~SaGEPLnpe~~~w~~~~~-g~~i~d~~gqTEtg~~~~~~~~---~~~~g~~g~p~pG~~~~vvd-d~g~  360 (528)
T COG0365         286 PYDLSSLRVLGSAGEPLNPEAFEWFYSAL-GVWILDIYGQTETGMGFIAGRP---PVKNGSSGLPLPGYAVRRVD-DEGN  360 (528)
T ss_pred             cccchhheeeeccCCCCCHHHHHHHHHHh-CCCEeccccccccCccccCCCC---CcCCCCCCCCCCCceeEEEC-CCCC
Confidence            88999999999999999999999999999 6999999999999955544433   24556669999999999999 5599


Q ss_pred             CCCCCCcceEEEecC--CcchhhcCCccccccccchhhhcccc
Q 028779          163 PLPPNQLGEIWLRGP--NMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       163 ~~~~g~~Gel~v~g~--~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      ++++|+ |+|+++.+  +++++||+|++++.+++... ||+|+
T Consensus       361 ~~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~-~y~tG  401 (528)
T COG0365         361 PVPPGV-GELVVRLPWPGMALTYWNDPERYKEAYFGR-WYRTG  401 (528)
T ss_pred             cCCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHhhc-eeecC
Confidence            999999 99999986  99999999999999888733 88876

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.7e-32  Score=236.22  Aligned_cols=188  Identities=20%  Similarity=0.263  Sum_probs=159.3

Q ss_pred             CCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhC--------CCCC
Q 028779           11 ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH--------GLVK   82 (204)
Q Consensus        11 ~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~--------~~~~   82 (204)
                      .+.|++++.+|++|+++... .+.+++.|+++++.+. ++..+++.|+++++|+++++|.++..+.+.        +..+
T Consensus       345 ~~~d~~ls~LPL~Hi~~~~~-~~~~l~~G~~i~~~~~-~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~  422 (746)
T PTZ00342        345 YNPKTHLSYLPISHIYERVI-AYLSFMLGGTINIWSK-DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLK  422 (746)
T ss_pred             CCCCeEEEeCcHHHHHHHHH-HHHHHHcCCEEEEeCC-CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHH
Confidence            35689999999999999976 6778999999998875 899999999999999999999999988652        1100


Q ss_pred             C----------------------------------CCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEccccccccccc
Q 028779           83 K----------------------------------FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGI  128 (204)
Q Consensus        83 ~----------------------------------~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~  128 (204)
                      +                                  ....+||.+++||+++++++.+++++.+ ++.+++.||+||+++.
T Consensus       423 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~-g~~i~~gYGlTEt~~~  501 (746)
T PTZ00342        423 RFLVKKILSLRKSNNNGGFSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLL-NVNYYQGYGLTETTGP  501 (746)
T ss_pred             HHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhc-CCCEEEeeccCcccce
Confidence            0                                  0025899999999999999999999888 7899999999999776


Q ss_pred             ccccCCCCCCCCCCCccccC-CCceEEEEeCCCCCCCCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          129 ATMENSFAGSRNIGSAGALA-PGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       129 ~~~~~~~~~~~~~~~~G~p~-~~~~v~v~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      .+.....+  ...+++|+|+ |+++++++|.++....+.+..|||++|||.++.|||++|++|+++|+.+||||||
T Consensus       502 ~~~~~~~~--~~~gsvG~p~~pg~e~ki~d~~~~~~~~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TG  575 (746)
T PTZ00342        502 IFVQHADD--NNTESIGGPISPNTKYKVRTWETYKATDTLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTG  575 (746)
T ss_pred             eeeccCCC--CCcccccCcCCCcEEEEEecccccccCCCCCceEEEEecCcccccccCChhhhhhhcCcCCcccCC
Confidence            65544332  4678999998 9999999986655555556679999999999999999999999999889999998

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=2.6e-32  Score=235.12  Aligned_cols=190  Identities=24%  Similarity=0.345  Sum_probs=156.2

Q ss_pred             cCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCC-------
Q 028779            9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV-------   81 (204)
Q Consensus         9 ~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~-------   81 (204)
                      .+.++|++++.+|++|+++... .+..+..|+++++.+ +++..+++.|+++++|+++++|+++..+.+....       
T Consensus       265 ~~~~~d~~l~~lPl~H~~~~~~-~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~  342 (666)
T PLN02614        265 ALTVKDVYLSYLPLAHIFDRVI-EECFIQHGAAIGFWR-GDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGF  342 (666)
T ss_pred             CCCCCcEEEEeccHHHHHHHHH-HHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCH
Confidence            5678999999999999999876 566788999998875 5999999999999999999999999987642100       


Q ss_pred             ------------------------CCC-------------CC-ccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccc
Q 028779           82 ------------------------KKF-------------DL-SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLT  123 (204)
Q Consensus        82 ------------------------~~~-------------~l-~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~t  123 (204)
                                              ...             .+ ++||.+++||+++++.+ +++.+.++++.+++.||+|
T Consensus       343 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~-~~~~~~~~~~~i~~~YG~T  421 (666)
T PLN02614        343 LKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ESFLRVVACCHVLQGYGLT  421 (666)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHH-HHHHHHhcCCCEEeeCchH
Confidence                                    000             01 58999999999999875 6677777678999999999


Q ss_pred             cccccccccCCCCCCCCCCCccccCCCceEEEEeC-C-CCCCCCCCCcceEEEecCCcchhhcCCccccccccchhhhcc
Q 028779          124 ETSGIATMENSFAGSRNIGSAGALAPGVEALIVSV-D-TQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMH  201 (204)
Q Consensus       124 E~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~-~-~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~  201 (204)
                      |++..++.....+ ....+++|+|+|+++++|+|+ + .++++++|+.|||++|||+++.|||++|++|++.|. +||||
T Consensus       422 E~~~~~~~~~~~~-~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~~~pe~T~~~f~-dGw~~  499 (666)
T PLN02614        422 ESCAGTFVSLPDE-LDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKREDLTKEVLI-DGWLH  499 (666)
T ss_pred             hhhhheeeecccc-CCcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCcccccccCCHHHhhhhhc-cCCcc
Confidence            9876554433222 234679999999999999983 3 247889999999999999999999999999999997 89999


Q ss_pred             cc
Q 028779          202 SF  203 (204)
Q Consensus       202 ~~  203 (204)
                      ||
T Consensus       500 TG  501 (666)
T PLN02614        500 TG  501 (666)
T ss_pred             cc
Confidence            98

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=99.98  E-value=1.1e-31  Score=227.59  Aligned_cols=191  Identities=27%  Similarity=0.339  Sum_probs=163.9

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCC--CC
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KK   83 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~--~~   83 (204)
                      ..++++++|+++..+|++|++++.. ++.++..|+++++.+++++..+++.++++++|++.++|+++..|++....  ..
T Consensus       206 ~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~  284 (563)
T PLN02860        206 AIVGYGEDDVYLHTAPLCHIGGLSS-ALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTW  284 (563)
T ss_pred             hhcCCCCCCEEEEecCchhhccHHH-HHHHHHcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhcc
Confidence            3567889999999999999999876 78999999999999999999999999999999999999999999875432  23


Q ss_pred             CCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCC---------------------CCCCCC
Q 028779           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA---------------------GSRNIG  142 (204)
Q Consensus        84 ~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~---------------------~~~~~~  142 (204)
                      ..+++||.+++||+++++++.+++++.|++.++++.||+||++..........                     ......
T Consensus       285 ~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (563)
T PLN02860        285 KVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGV  364 (563)
T ss_pred             ccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcccccccccccccccchhhhhhhcccccccccccCCc
Confidence            45779999999999999999999999998899999999999876543321111                     011223


Q ss_pred             CccccCCCceEEEEeCCCCCCCCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          143 SAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       143 ~~G~p~~~~~v~v~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      ++|+|+|+++++++|++      +|+.|||+++|+.++.|||++++.+++.+..+||||||
T Consensus       365 ~vG~p~~~~~v~i~~~~------~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TG  419 (563)
T PLN02860        365 CVGKPAPHVELKIGLDE------SSRVGRILTRGPHVMLGYWGQNSETASVLSNDGWLDTG  419 (563)
T ss_pred             ccCCccCCcEEEEecCC------CCceeEEEEecCcccccccCCccccchhccCCCeEEcc
Confidence            68999999999999833      68899999999999999999999999999889999997

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=99.98  E-value=2.7e-31  Score=224.44  Aligned_cols=194  Identities=21%  Similarity=0.267  Sum_probs=171.8

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCC
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~   85 (204)
                      ..++++++|++++.+|++|.+++...++.++..|+++++.+.+++..+++.++++++|.+.++|+++..+.........+
T Consensus       231 ~~~~~~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~  310 (547)
T PRK13295        231 ERLGLGADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRP  310 (547)
T ss_pred             HHhCCCCCCeEEEecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccCCC
Confidence            34677889999999999999998887889999999999999899999999999999999999999999998876555667


Q ss_pred             CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCC
Q 028779           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  165 (204)
Q Consensus        86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~  165 (204)
                      +++||.++++|+++++++.+++++.+ ++++++.||+||++.++.............++|+|+++++++|+| +++++++
T Consensus       311 ~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d-~~~~~~~  388 (547)
T PRK13295        311 VSSLRTFLCAGAPIPGALVERARAAL-GAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVD-ADGAPLP  388 (547)
T ss_pred             cccceEEEEecCCCCHHHHHHHHHHh-CCCeEEeccCCCCCCeeeccCCCcchhccCccccccCCcEEEEEC-CCCCCCC
Confidence            88999999999999999999999998 889999999999987665443222223456889999999999999 7789999


Q ss_pred             CCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          166 PNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       166 ~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      .|+.|||+++|+.++.||+++++.+++.  .+|||+|+
T Consensus       389 ~g~~Gel~v~g~~~~~gY~~~~~~t~~~--~~g~~~TG  424 (547)
T PRK13295        389 AGQIGRLQVRGCSNFGGYLKRPQLNGTD--ADGWFDTG  424 (547)
T ss_pred             CCCCCeEEEEcCcccccccCCccccccC--CCCCeecc
Confidence            9999999999999999999999988776  47899997

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=99.98  E-value=3.8e-32  Score=227.30  Aligned_cols=182  Identities=28%  Similarity=0.364  Sum_probs=152.4

Q ss_pred             ccccc-CCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhC-----
Q 028779            5 DQETA-GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH-----   78 (204)
Q Consensus         5 ~~~~~-~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~-----   78 (204)
                      ...+. ++++|++++.+|+.|++..+......+..|+++.  ...+++.+++.+++.++|.+.++|.+++.+-+.     
T Consensus       224 ~~~~~~~~~~d~~LsfLPlaHi~Er~~~~~~~~~~g~~~~--~~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv  301 (613)
T COG1022         224 DEVLPPIGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVL--FKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKV  301 (613)
T ss_pred             HhhCCCCCCCcEEEEeCcHHHHHHHHHHHHHHhhcceEEE--ecCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHH
Confidence            34454 8899999999999999999864344444444444  445899999999999999999999998877431     


Q ss_pred             ---CCCC---------------------------------------CCCC-ccceeeeecCCCCCHHHHHHHHHhCCCCc
Q 028779           79 ---GLVK---------------------------------------KFDL-SSLKLVGSGAAPLGKELMEECAKNVPSAT  115 (204)
Q Consensus        79 ---~~~~---------------------------------------~~~l-~~lr~~~~~G~~l~~~~~~~~~~~~~~~~  115 (204)
                         +..+                                       +..+ .++|.+++||+++++++..+++..  +++
T Consensus       302 ~~~~~~~~~if~~a~~~~~~~~~~~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l--Gi~  379 (613)
T COG1022         302 AKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL--GIP  379 (613)
T ss_pred             HhcchhHHHHHHHHHHHHHHHHHhhhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc--CCC
Confidence               1000                                       0001 389999999999999999999988  799


Q ss_pred             EEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCCCcceEEEecCCcchhhcCCccccccccc
Q 028779          116 VIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWG  195 (204)
Q Consensus       116 ~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~  195 (204)
                      +.++||+||+++.++..++..  ...+++|.|+|+++++|+| +          |||+||||.+|.|||++|++|.++|+
T Consensus       380 i~eGYGlTEts~~~~v~~~~~--~~~gtvG~p~p~~evKI~d-~----------GEilVRG~~Vm~GYyk~pe~Taeaf~  446 (613)
T COG1022         380 ILEGYGLTETSAVVSVNPPDR--FVLGTVGKPLPGIEVKIAD-D----------GEILVRGPNVMKGYYKNPEATAEAFT  446 (613)
T ss_pred             eEEEecccccccceEEccccC--cccCCcCCcCCCceEEEcc-C----------ceEEEecchhcchhcCChHHHhhhcc
Confidence            999999999999988876655  7788999999999999998 6          99999999999999999999999999


Q ss_pred             hhhhcccc
Q 028779          196 FRKIMHSF  203 (204)
Q Consensus       196 ~~gw~~~~  203 (204)
                      .|||||||
T Consensus       447 ~DGWf~TG  454 (613)
T COG1022         447 EDGWFRTG  454 (613)
T ss_pred             ccCCcccC
Confidence            99999998

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.98  E-value=1.9e-31  Score=241.65  Aligned_cols=198  Identities=27%  Similarity=0.343  Sum_probs=174.1

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCC
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~   84 (204)
                      ..++.+++|++++.+|++|.+++...++.++..|+++++.+ .+++..+++.++++++|++.++|++++.+++.+...+.
T Consensus       816 ~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  895 (1146)
T PRK08633        816 DVFNLRNDDVILSSLPFFHSFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPL  895 (1146)
T ss_pred             HhcCCCCCCEEEEcCcHHHHHhHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCcc
Confidence            45678899999999999999999887888999999999876 47999999999999999999999999999987666667


Q ss_pred             CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCC--------CCCCCCCccccCCCceEEEE
Q 028779           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA--------GSRNIGSAGALAPGVEALIV  156 (204)
Q Consensus        85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~--------~~~~~~~~G~p~~~~~v~v~  156 (204)
                      +++++|.+++||+++++++.+++++.+ ++++++.||+||++..++....+.        ...+.+++|+|+|+++++|+
T Consensus       896 ~~~~lr~~~~gg~~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~  974 (1146)
T PRK08633        896 MFASLRLVVAGAEKLKPEVADAFEEKF-GIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIV  974 (1146)
T ss_pred             cCCCeeeEEEcCCcCCHHHHHHHHHHh-CCCeecccccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEEE
Confidence            789999999999999999999999998 789999999999987665432211        11346789999999999999


Q ss_pred             eCCCCCCCCCCCcceEEEecCCcchhhcCCccccccccch---hhhccccC
Q 028779          157 SVDTQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGF---RKIMHSFI  204 (204)
Q Consensus       157 d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~---~gw~~~~~  204 (204)
                      |+++++++++|+.|||+++|++++.|||++++.|++.+..   +|||+||.
T Consensus       975 d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~~~~TGD 1025 (1146)
T PRK08633        975 DPETFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVTGD 1025 (1146)
T ss_pred             cCCCCccCCCCCceEEEEcCCCccccccCCccchHHHhhcCCCCCeEECCC
Confidence            9889999999999999999999999999999999988862   29999973

>PLN02654 acetate-CoA ligase

Probab=99.98  E-value=1.7e-31  Score=230.21  Aligned_cols=197  Identities=20%  Similarity=0.226  Sum_probs=171.0

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC----CCHHHHHHHHHhcCceEEEechHHHHHHHhCCC-
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL-   80 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~-   80 (204)
                      ..++++++|++++..|++|+++....++.+|+.|+++++.++    +++..+++.|+++++|+++.+|++++.|++... 
T Consensus       310 ~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~  389 (666)
T PLN02654        310 YAFDYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDE  389 (666)
T ss_pred             HhcCCCCCcEEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCcc
Confidence            357889999999999999999988778899999999999863    489999999999999999999999999988653 


Q ss_pred             -CCCCCCccceeeeecCCCCCHHHHHHHHHhCCC--CcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEe
Q 028779           81 -VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPS--ATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVS  157 (204)
Q Consensus        81 -~~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~--~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d  157 (204)
                       ....++++||.++++|+++++++.+++.+.++.  +++.+.||+||+++......+.......+++|.|+|+++++|+|
T Consensus       390 ~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d  469 (666)
T PLN02654        390 YVTRHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD  469 (666)
T ss_pred             ccccCChhheeEEEEecCCCCHHHHHHHHHHhCCCCCceeccccccccCCeeeccCCCCCCCCCCccCCCCCCceEEEEC
Confidence             234577899999999999999999999999853  68999999999987665443322235678899999999999999


Q ss_pred             CCCCCCCCCCCcceEEEec--CCcchhhcCCccccccccc--hhhhcccc
Q 028779          158 VDTQKPLPPNQLGEIWLRG--PNMMRGIMLIASIILSSWG--FRKIMHSF  203 (204)
Q Consensus       158 ~~~~~~~~~g~~Gel~v~g--~~~~~gY~~~~~~t~~~~~--~~gw~~~~  203 (204)
                       ++|++++.++.|||++++  |+++.|||++++++.+++.  .+||||||
T Consensus       470 -~~g~~~~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TG  518 (666)
T PLN02654        470 -EKGKEIEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYFSG  518 (666)
T ss_pred             -CCCCCCCCCCceEEEEcCCCchhhhhhcCChHHHHHhhhhcCCCEEEeC
Confidence             889999989999999999  7899999999998887653  37999997

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.98  E-value=2.2e-31  Score=224.72  Aligned_cols=195  Identities=27%  Similarity=0.434  Sum_probs=173.7

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCC
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~   85 (204)
                      ..++++.+|++++.+|++|++++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..+++.+.....+
T Consensus       224 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~~~  303 (546)
T PRK08314        224 LWSNSTPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAERD  303 (546)
T ss_pred             HhhCCCCCceEEEEcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCCccccC
Confidence            35677899999999999999999887889999999999999999999999999999999999999999998876555667


Q ss_pred             CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCC
Q 028779           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  165 (204)
Q Consensus        86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~  165 (204)
                      ++++|.++.||+++++++.+++.+.| +.++++.||+||++..........  ....++|+|+++++++++|++++++++
T Consensus       304 ~~~l~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~--~~~~~~G~~~~g~~~~i~d~~~~~~~~  380 (546)
T PRK08314        304 LSSLRYIGGGGAAMPEAVAERLKELT-GLDYVEGYGLTETMAQTHSNPPDR--PKLQCLGIPTFGVDARVIDPETLEELP  380 (546)
T ss_pred             chhhheeeeccccCCHHHHHHHHHHc-CCcEEecccccccccceecCCCcC--CCCCccCcccCCeEEEEEeCCCCcCCC
Confidence            88999999999999999999999998 689999999999987765543322  345689999999999999988899999


Q ss_pred             CCCcceEEEecCCcchhhcCCccccccccch---hhhcccc
Q 028779          166 PNQLGEIWLRGPNMMRGIMLIASIILSSWGF---RKIMHSF  203 (204)
Q Consensus       166 ~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~---~gw~~~~  203 (204)
                      .|+.|||+++|++++.||+++++.+++.|..   ++||+|+
T Consensus       381 ~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TG  421 (546)
T PRK08314        381 PGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTG  421 (546)
T ss_pred             CCCceEEEEECCchhccccCChhHhhhhhhhcCCCceEecC
Confidence            9999999999999999999999999888752   3599997

>PRK06145 acyl-CoA synthetase; Validated

Probab=99.98  E-value=4.3e-31  Score=220.57  Aligned_cols=195  Identities=28%  Similarity=0.360  Sum_probs=174.5

Q ss_pred             cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCC
Q 028779            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (204)
Q Consensus         7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l   86 (204)
                      .+++..+|+++..+|++|.+++....+.++..|+++++.+.+++..+++.++++++|.+.++|+++..+++.......++
T Consensus       184 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~~~~~  263 (497)
T PRK06145        184 ALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDL  263 (497)
T ss_pred             hhCCCCCcEEEEecCchhHhHHHHHHHHHHhccCEEEECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCcccccc
Confidence            45788899999999999999997766788999999999998999999999999999999999999999998766566677


Q ss_pred             ccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCCC
Q 028779           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP  166 (204)
Q Consensus        87 ~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~~  166 (204)
                      +++|.++.||++++.++.+++.+.|++.++++.||+||++...+...........+++|+|+++++++++| ++++.+++
T Consensus       264 ~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~  342 (497)
T PRK06145        264 DSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIAD-GAGRWLPP  342 (497)
T ss_pred             ccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceeccCccccccCCCcccCCCCceEEEEC-CCCCCCCC
Confidence            89999999999999999999999998899999999999988655433322234567899999999999999 77899999


Q ss_pred             CCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          167 NQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       167 g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      |+.|||+++|++++.|||++++.+++.|. ++||+|+
T Consensus       343 ~~~Gel~v~g~~~~~Gy~~~~~~~~~~~~-~~~~~TG  378 (497)
T PRK06145        343 NMKGEICMRGPKVTKGYWKDPEKTAEAFY-GDWFRSG  378 (497)
T ss_pred             CCceEEEEECcchhhhhcCChHHHHHHHh-CCCeecc
Confidence            99999999999999999999999999987 8999997

>PRK08315 AMP-binding domain protein; Validated

Probab=99.98  E-value=3.4e-31  Score=224.15  Aligned_cols=198  Identities=25%  Similarity=0.352  Sum_probs=175.2

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEE-cCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCC
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIIL-MAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~-~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~   84 (204)
                      ..++++++|+++..+|++|++++...++.++..|+++++ ...+++..+++.++++++|.++++|+++..++........
T Consensus       233 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~~  312 (559)
T PRK08315        233 EAMKLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFARF  312 (559)
T ss_pred             HhcCCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCCC
Confidence            456788999999999999999998888999999999985 4568999999999999999999999999999887665666


Q ss_pred             CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCC-CCCCCCccccCCCceEEEEeCCCCCC
Q 028779           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG-SRNIGSAGALAPGVEALIVSVDTQKP  163 (204)
Q Consensus        85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~-~~~~~~~G~p~~~~~v~v~d~~~~~~  163 (204)
                      ++++||.++++|++++.++.+++.+.++..++++.||+||++.++........ .....++|+|+|+++++++|++++++
T Consensus       313 ~~~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~  392 (559)
T PRK08315        313 DLSSLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGET  392 (559)
T ss_pred             CchhhheeEecCCCCCHHHHHHHHHHcCCcceeEEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEcCccCCc
Confidence            78999999999999999999999999977779999999999876655433221 23467899999999999999777999


Q ss_pred             CCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          164 LPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       164 ~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      ++.|+.|||+++|++++.|||++++.+++.|..++||+||
T Consensus       393 ~~~g~~GEl~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TG  432 (559)
T PRK08315        393 VPRGEQGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTG  432 (559)
T ss_pred             CCCCCceEEEEECchhhhhhcCChhHHhhcCCCCCCEEcc
Confidence            9999999999999999999999999999888778999997

>PRK06839 acyl-CoA synthetase; Validated

Probab=99.98  E-value=5.1e-31  Score=219.91  Aligned_cols=194  Identities=26%  Similarity=0.353  Sum_probs=172.2

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCC
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~   85 (204)
                      ..++++++|++++.+|++|.+++...++.++..|+++++.+.+++..+++.++++++|.+.++|++++.+++.......+
T Consensus       183 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~  262 (496)
T PRK06839        183 FAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFETTN  262 (496)
T ss_pred             HHcCCCCCCeEEEeeCCcchhhHHHHHHHHHhcCcEEEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccccCC
Confidence            34567889999999999999999887788999999999998899999999999999999999999999999887666677


Q ss_pred             CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCC
Q 028779           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  165 (204)
Q Consensus        86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~  165 (204)
                      ++++|.++++|+++++++.+++++.  ++++.+.||+||++..+............+++|+|+++++++|+| ++++.++
T Consensus       263 ~~~lr~~~~gG~~~~~~~~~~~~~~--g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~~~~  339 (496)
T PRK06839        263 LQSVRWFYNGGAPCPEELMREFIDR--GFLFGQGFGMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELID-ENKNKVE  339 (496)
T ss_pred             CcccceEEECCCCCCHHHHHHHHHh--CCeeEeeccCCCCCcceEecccccccccCCCCcccCCCceEEEEC-CCcCCCC
Confidence            8899999999999999999999886  789999999999987654433333234567899999999999999 6677799


Q ss_pred             CCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          166 PNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       166 ~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      .|+.|||+++|++++.|||++++.+...+. +|||+|+
T Consensus       340 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TG  376 (496)
T PRK06839        340 VGEVGELLIRGPNVMKEYWNRPDATEETIQ-DGWLCTG  376 (496)
T ss_pred             CCCceEEEEECCCcchhhcCChHHHHHHHc-CCCeeec
Confidence            999999999999999999999999988876 8999997

>PLN02736 long-chain acyl-CoA synthetase

Probab=99.97  E-value=5.9e-31  Score=226.52  Aligned_cols=193  Identities=23%  Similarity=0.256  Sum_probs=159.5

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCC-----
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL-----   80 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~-----   80 (204)
                      ..+++.++|++++.+|++|+++... ++.++..|+++++.+. ++..+++.|+++++|+++++|++++.+.+...     
T Consensus       255 ~~~~~~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~i~~~~~-~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~  332 (651)
T PLN02736        255 LSTKFYPSDVHISYLPLAHIYERVN-QIVMLHYGVAVGFYQG-DNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKE  332 (651)
T ss_pred             hccCCCCCCEEEEeCCHHHHHHHHH-HHHHHHcCCEEEEeCC-CHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhc
Confidence            3567788999999999999999986 7788999999988764 88999999999999999999999988754210     


Q ss_pred             ------------------------CCC------------CCC-ccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccc
Q 028779           81 ------------------------VKK------------FDL-SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLT  123 (204)
Q Consensus        81 ------------------------~~~------------~~l-~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~t  123 (204)
                                              ...            ..+ +++|.+++||+++++++.+++++.+ ++++++.||+|
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~-g~~~~~~YG~T  411 (651)
T PLN02736        333 SGGLKERLFNAAYNAKKQALENGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICF-GGRVLEGYGMT  411 (651)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHh-CCCeEEEechH
Confidence                                    000            001 4899999999999999999999888 68899999999


Q ss_pred             cccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCC---CCCCCcceEEEecCCcchhhcCCccccccccchhhhc
Q 028779          124 ETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP---LPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIM  200 (204)
Q Consensus       124 E~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~---~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~  200 (204)
                      |+++..+......  ...+++|+|+|+++++|+|.++++.   ..+++.|||+++||+++.|||++++.|++.|..+|||
T Consensus       412 E~~~~~~~~~~~~--~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~~dgw~  489 (651)
T PLN02736        412 ETSCVISGMDEGD--NLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGWL  489 (651)
T ss_pred             HhchheeccCCCC--CCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhhccCCCe
Confidence            9987665443322  4567899999999999998544332   2344579999999999999999999999999889999


Q ss_pred             ccc
Q 028779          201 HSF  203 (204)
Q Consensus       201 ~~~  203 (204)
                      |||
T Consensus       490 ~TG  492 (651)
T PLN02736        490 HTG  492 (651)
T ss_pred             ecc
Confidence            998

>PRK07788 acyl-CoA synthetase; Validated

Probab=99.97  E-value=8.1e-31  Score=221.59  Aligned_cols=190  Identities=23%  Similarity=0.282  Sum_probs=165.0

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCC--CC
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KK   83 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~--~~   83 (204)
                      ..++++++|+++..+|++|++++.. ++.++..|+++++.+.+++..+++.++++++|++.++|+++..+++....  ..
T Consensus       241 ~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~  319 (549)
T PRK07788        241 SRVPFRAGETTLLPAPMFHATGWAH-LTLAMALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAK  319 (549)
T ss_pred             hhCCCCcCCeEEEccchHHHHHHHH-HHHHHHhCCEEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCC
Confidence            3566788999999999999999977 67889999999999889999999999999999999999999999887543  45


Q ss_pred             CCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCC
Q 028779           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP  163 (204)
Q Consensus        84 ~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~  163 (204)
                      .++++||.+++||+++++++.+++++.| +..+++.||+||++..+.... .+......++|+|+++++++++| +++++
T Consensus       320 ~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~-~~~~~~~~~vG~~~~~~~~~i~d-~~~~~  396 (549)
T PRK07788        320 YDTSSLKIIFVSGSALSPELATRALEAF-GPVLYNLYGSTEVAFATIATP-EDLAEAPGTVGRPPKGVTVKILD-ENGNE  396 (549)
T ss_pred             CCCCceeEEEEeCCCCCHHHHHHHHHHh-CccceeccCcchhchhhccCh-hhhhhcCCCcccCCCCcEEEEEC-CCcCC
Confidence            5678999999999999999999999998 578999999999886554432 22123457899999999999999 88999


Q ss_pred             CCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          164 LPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       164 ~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      +++|+.|||+++|+.++.||+++++.   .. .+|||+||
T Consensus       397 ~~~g~~Gel~v~g~~~~~gY~~~~~~---~~-~~g~~~TG  432 (549)
T PRK07788        397 VPRGVVGRIFVGNGFPFEGYTDGRDK---QI-IDGLLSSG  432 (549)
T ss_pred             CCCCCeEEEEEeCCCccccccCCCcc---cc-cCCceecC
Confidence            99999999999999999999998875   22 27999997

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=1.5e-30  Score=217.92  Aligned_cols=197  Identities=29%  Similarity=0.424  Sum_probs=176.1

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCC
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~   85 (204)
                      ..++++++|++++.+|++|.+++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..+++.......+
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~  279 (513)
T PRK07656        200 EYLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAED  279 (513)
T ss_pred             HhhCCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCCCC
Confidence            45678899999999999999999887899999999999998889999999999999999999999999999887666667


Q ss_pred             CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCC-CCCCCCccccCCCceEEEEeCCCCCCC
Q 028779           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG-SRNIGSAGALAPGVEALIVSVDTQKPL  164 (204)
Q Consensus        86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~-~~~~~~~G~p~~~~~v~v~d~~~~~~~  164 (204)
                      ++++|.++++|+++++++++++.+.++...+++.||+||++++......... .....++|.|+++++++++| ++++++
T Consensus       280 ~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~~  358 (513)
T PRK07656        280 LSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVN-ELGEEV  358 (513)
T ss_pred             ccceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCceeecCccccccccCCCccccCCCcEEEEEC-CCCCCC
Confidence            8899999999999999999999999954489999999999887765543321 12267899999999999999 789999


Q ss_pred             CCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          165 PPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       165 ~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      +.|+.|||+++|+.++.||+++++.+...+..+|||+||
T Consensus       359 ~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tG  397 (513)
T PRK07656        359 PVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTG  397 (513)
T ss_pred             CCCCceEEEEEcchhhhhhcCCHHHHhhhhccCCceecc
Confidence            999999999999999999999999998888778999997

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=99.97  E-value=3.9e-31  Score=227.76  Aligned_cols=189  Identities=23%  Similarity=0.305  Sum_probs=152.0

Q ss_pred             CCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhC-----------
Q 028779           10 GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH-----------   78 (204)
Q Consensus        10 ~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~-----------   78 (204)
                      +.++|++++.+|++|+++... .+.+++.|+++++.+ +++..+++.|+++++|+++++|+++..+.+.           
T Consensus       263 ~~~~d~~l~~lPl~H~~~~~~-~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~  340 (660)
T PLN02861        263 ATEEDSYFSYLPLAHVYDQVI-ETYCISKGASIGFWQ-GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGML  340 (660)
T ss_pred             CCCCCEEEEECcHHHHHHHHH-HHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHH
Confidence            467899999999999999876 556899999998874 6899999999999999999999999988641           


Q ss_pred             --------------------------CCCCCC-------CC-ccceeeeecCCCCCHHHHHHHHHhCCCCcEEccccccc
Q 028779           79 --------------------------GLVKKF-------DL-SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTE  124 (204)
Q Consensus        79 --------------------------~~~~~~-------~l-~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE  124 (204)
                                                +.....       .+ .++|.+++||+++++++. ++.+.++...+++.||+||
T Consensus       341 ~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~-~~~~~~~~~~l~~~YG~TE  419 (660)
T PLN02861        341 RKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVE-EFLRVTSCSVLSQGYGLTE  419 (660)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHH-HHHHHHcCCCeeEecchhh
Confidence                                      000000       11 479999999999999975 4666665567999999999


Q ss_pred             ccccccccCCCCCCCCCCCccccCCCceEEEEe-CCCC-CCCCCCCcceEEEecCCcchhhcCCccccccccchhhhccc
Q 028779          125 TSGIATMENSFAGSRNIGSAGALAPGVEALIVS-VDTQ-KPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHS  202 (204)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d-~~~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~  202 (204)
                      +++.++...... ....+++|+|+|+++++++| ++.| ..+++++.|||++|||+++.|||++|++|+++|. +|||||
T Consensus       420 ~~~~~~~~~~~~-~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY~~~pe~T~~~f~-dGw~~T  497 (660)
T PLN02861        420 SCGGCFTSIANV-FSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQDLTEEVLI-DGWFHT  497 (660)
T ss_pred             hhhceeeccccc-CCCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCcccccccCCHHHHHhhhh-ccCccc
Confidence            876554432222 23467999999999999998 3444 3455677899999999999999999999999997 899999


Q ss_pred             c
Q 028779          203 F  203 (204)
Q Consensus       203 ~  203 (204)
                      |
T Consensus       498 G  498 (660)
T PLN02861        498 G  498 (660)
T ss_pred             C
Confidence            8

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=99.97  E-value=1.5e-30  Score=218.97  Aligned_cols=195  Identities=23%  Similarity=0.311  Sum_probs=170.3

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCC
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~   84 (204)
                      ..+.+.++|++++.+|++|.+++.. .++.++..|+++++.+.+++..+++.++++++|++.++|+++..+++.......
T Consensus       217 ~~~~~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~  296 (527)
T TIGR02275       217 EICWLTQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRY  296 (527)
T ss_pred             hhcCCCcCCEEEECCChHhhhhhhHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccCC
Confidence            4567788999999999999999875 477889999999998888999999999999999999999999999887666667


Q ss_pred             CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccC-CCceEEEEeCCCCCC
Q 028779           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALA-PGVEALIVSVDTQKP  163 (204)
Q Consensus        85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~-~~~~v~v~d~~~~~~  163 (204)
                      +++++|.+++||+++++++.+++.+.+ ++++++.||+||++...... .........++|+|+ +++.++++| +++++
T Consensus       297 ~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~-~~~~~~~~~~~G~~~~~~~~v~i~d-~~g~~  373 (527)
T TIGR02275       297 DLSSLKLLQVGGAKFSEAAARRVPAVF-GCQLQQVFGMAEGLVNYTRL-DDPAEIIFTTQGRPMSPDDEVRVVD-DHGNP  373 (527)
T ss_pred             CccceEEEEEcCCCCCHHHHHHHHHHh-CCeEEeeeccCccCccccCC-CCccccccccCCCCCCCCceEEEEC-CCCCC
Confidence            788999999999999999999999988 78999999999965433221 112223456899999 588999999 88999


Q ss_pred             CCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          164 LPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       164 ~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      +++|+.|||+++|+.++.|||++++.+.+.|..+|||+||
T Consensus       374 ~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TG  413 (527)
T TIGR02275       374 VAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTG  413 (527)
T ss_pred             CCCCCceEEEecCCccchhhcCChhHhHhhcCcCCCEEcC
Confidence            9999999999999999999999999999999889999997

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=99.97  E-value=1.4e-30  Score=221.05  Aligned_cols=194  Identities=29%  Similarity=0.355  Sum_probs=170.0

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHHHhCCC--CC
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--VK   82 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~~   82 (204)
                      ..++++++|++++..|++|.+++...++.++..|+++++.+ .+++..+++.++++++|+++++|++++.|++...  ..
T Consensus       239 ~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  318 (570)
T PRK04319        239 YVLDLHEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVK  318 (570)
T ss_pred             HhcCCCCCceEEecCChHHhhCchHHHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccc
Confidence            45678889999999999999998877899999999999875 6899999999999999999999999999987543  23


Q ss_pred             CCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCC
Q 028779           83 KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQK  162 (204)
Q Consensus        83 ~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~  162 (204)
                      ..++++||.++++|+++++++.+++++.+ +.++++.||+||++......... .....+++|+|+|+++++|+| ++++
T Consensus       319 ~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~i~~~YG~tE~~~~~~~~~~~-~~~~~~~~G~p~~g~~~~i~d-~~~~  395 (570)
T PRK04319        319 KYDLSSLRHILSVGEPLNPEVVRWGMKVF-GLPIHDNWWMTETGGIMIANYPA-MDIKPGSMGKPLPGIEAAIVD-DQGN  395 (570)
T ss_pred             cCCcccceEEEEcccCCCHHHHHHHHHHh-CCCeEeceeecccCCEEEecCCC-CCCCCCcCcCCCCCCEEEEEC-CCCC
Confidence            45678999999999999999999999988 68899999999998765443222 124567899999999999999 7788


Q ss_pred             CCCCCCcceEEEec--CCcchhhcCCccccccccchhhhcccc
Q 028779          163 PLPPNQLGEIWLRG--PNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       163 ~~~~g~~Gel~v~g--~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      ++++|+.|||+++|  ++++.|||++++.+.+.|. +|||+||
T Consensus       396 ~~~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~-~gw~~TG  437 (570)
T PRK04319        396 ELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFA-GDWYVSG  437 (570)
T ss_pred             CCCCCCceEEEEcCCCChHHhHhcCCHHHhhhhhc-CCceEeC
Confidence            89999999999997  8999999999999999998 8999997

>PRK08316 acyl-CoA synthetase; Validated

Probab=99.97  E-value=1.9e-30  Score=217.73  Aligned_cols=196  Identities=29%  Similarity=0.357  Sum_probs=176.8

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCC
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~   85 (204)
                      ..++++++|++++.+|++|.+++...++.++..|+++++.+..++..+++.++++++|++.++|+++..+++.......+
T Consensus       205 ~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~  284 (523)
T PRK08316        205 VAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRD  284 (523)
T ss_pred             HHhCCCCCceEEEccCCchhhhHHHHHHHHHhcCceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccccCC
Confidence            44678899999999999999998776777899999999998889999999999999999999999999999887666777


Q ss_pred             CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCC
Q 028779           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  165 (204)
Q Consensus        86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~  165 (204)
                      ++++|.+++||++++.++.+++++.+++.++++.||+||++.+.......+.....+++|+|+++++++|+| +++++++
T Consensus       285 ~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~  363 (523)
T PRK08316        285 LSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEEHLRRPGSAGRPVLNVETRVVD-DDGNDVA  363 (523)
T ss_pred             cccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCccccccCccccccccCCcccCCCCcEEEEEc-CCCCCCC
Confidence            889999999999999999999999998899999999999988776544433334567899999999999999 7799999


Q ss_pred             CCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          166 PNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       166 ~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      .|+.|||+++|+.++.||+++++.+++.|. +|||+||
T Consensus       364 ~g~~Gei~v~~~~~~~~y~~~~~~~~~~~~-~~~~~TG  400 (523)
T PRK08316        364 PGEVGEIVHRSPQLMLGYWDDPEKTAEAFR-GGWFHSG  400 (523)
T ss_pred             CCCcceEEEECCchhhhhcCCHHHHHHHhh-CCCeecc
Confidence            999999999999999999999999998887 8999997

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=99.97  E-value=1.5e-30  Score=223.15  Aligned_cols=197  Identities=27%  Similarity=0.332  Sum_probs=169.7

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC----CCHHHHHHHHHhcCceEEEechHHHHHHHhCCCC
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV   81 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~   81 (204)
                      ..++++++|++++..|++|+.+....++.+|..|+++++.+.    .++..+++.++++++|+++++|++++.|.+....
T Consensus       271 ~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~  350 (625)
T TIGR02188       271 YVFDIKDGDIFWCTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDE  350 (625)
T ss_pred             hccCCCCCcEEEECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCc
Confidence            346788999999999999999887668899999999999753    4899999999999999999999999999876432


Q ss_pred             --CCCCCccceeeeecCCCCCHHHHHHHHHhCC--CCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEe
Q 028779           82 --KKFDLSSLKLVGSGAAPLGKELMEECAKNVP--SATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVS  157 (204)
Q Consensus        82 --~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d  157 (204)
                        ...++++||.++++|+++++++.+++.+.++  ++++++.||+||+++..+.........+.+++|+|+++++++|+|
T Consensus       351 ~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d  430 (625)
T TIGR02188       351 WVKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMITPLPGATPTKPGSATLPFFGIEPAVVD  430 (625)
T ss_pred             ccccCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccccCCceeecCCCCCCcCCCcccCCcCCceEEEEC
Confidence              3356789999999999999999999999985  378999999999987765443322234567899999999999999


Q ss_pred             CCCCCCCC-CCCcceEEEec--CCcchhhcCCccccccccc--hhhhcccc
Q 028779          158 VDTQKPLP-PNQLGEIWLRG--PNMMRGIMLIASIILSSWG--FRKIMHSF  203 (204)
Q Consensus       158 ~~~~~~~~-~g~~Gel~v~g--~~~~~gY~~~~~~t~~~~~--~~gw~~~~  203 (204)
                       ++|++++ +|+.|||++++  |+++.|||++++.+.+.+.  .+|||+||
T Consensus       431 -~~g~~~~~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g~~~TG  480 (625)
T TIGR02188       431 -EEGNPVEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYYFTG  480 (625)
T ss_pred             -CCCCCCCCCCCeEEEEEccCCCcccccccCChHHHHHHHhccCCCEEECC
Confidence             8899999 99999999999  6899999999998877654  47999997

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=99.97  E-value=3e-30  Score=218.03  Aligned_cols=192  Identities=31%  Similarity=0.520  Sum_probs=167.7

Q ss_pred             CCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCCc--cc
Q 028779           12 LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS--SL   89 (204)
Q Consensus        12 ~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~--~l   89 (204)
                      ..++++.++|++|.+++...++.++..|+++++.+++++..+++.++++++|.+.++|+++..+++.+.....++.  ++
T Consensus       226 ~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l  305 (546)
T PLN02330        226 GQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKL  305 (546)
T ss_pred             CceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccccccccchhee
Confidence            3578999999999999887788899999999999999999999999999999999999999999886554444444  47


Q ss_pred             eeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCC---CCCCCCCccccCCCceEEEEeCCCCCCCCC
Q 028779           90 KLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA---GSRNIGSAGALAPGVEALIVSVDTQKPLPP  166 (204)
Q Consensus        90 r~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~---~~~~~~~~G~p~~~~~v~v~d~~~~~~~~~  166 (204)
                      |.++++|+++++++.+++.+.|+++++++.||+||++.+........   ......++|+|+|+++++++|+++++++++
T Consensus       306 ~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~  385 (546)
T PLN02330        306 QAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPK  385 (546)
T ss_pred             eeEEEcCCcCCHHHHHHHHHHcCCCeEEecccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccCCC
Confidence            89999999999999999999999999999999999986654321111   113346899999999999999888999999


Q ss_pred             CCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          167 NQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       167 g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      |+.|||+++|+.++.|||++++.+.+.++.+|||+||
T Consensus       386 g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TG  422 (546)
T PLN02330        386 NTPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTG  422 (546)
T ss_pred             CCceEEEEecchhhhhhccCccchhhhccCCCceecc
Confidence            9999999999999999999999999988889999997

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=99.97  E-value=3.2e-30  Score=217.45  Aligned_cols=194  Identities=18%  Similarity=0.178  Sum_probs=168.5

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCC
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~   85 (204)
                      ..++++.+|++++.+|++|.+++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..+++.......+
T Consensus       229 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~  308 (538)
T TIGR03208       229 ERLELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAP  308 (538)
T ss_pred             hhcCCCCCCeEEEeCCchhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCCC
Confidence            34567889999999999999998887889999999999998899999999999999999999999999888654434566


Q ss_pred             CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCC
Q 028779           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  165 (204)
Q Consensus        86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~  165 (204)
                      ++++|.++++|+++++++.+++.+.+ ++++++.||+||++.+..............++|+|+++++++++| +++++++
T Consensus       309 ~~~l~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~-~~~~~~~  386 (538)
T TIGR03208       309 VPSLFTFLCAGAPIPGILVERAWELL-GALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVID-ANGAKLS  386 (538)
T ss_pred             CCcceEEEEcCCCCCHHHHHHHHHHc-CCeEEeeeccCcCCCccccCcccchhhccCcccccCCCCEEEEEC-CCCCCCc
Confidence            78999999999999999999999988 689999999999987765543222222345789999999999999 7889999


Q ss_pred             CCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          166 PNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       166 ~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      +|+.|||+++|+.++.|||++++.+.  +..+|||+||
T Consensus       387 ~g~~Gel~v~g~~~~~gy~~~~~~~~--~~~~~~~~TG  422 (538)
T TIGR03208       387 QGETGRLLVRGCSNFGGYLKRPHLNS--TDAEGWFDTG  422 (538)
T ss_pred             CCCCcEEEEecCcccccccCCccccc--ccCCCceecc
Confidence            99999999999999999999998775  3458999997

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK07514 malonyl-CoA synthase; Validated

Probab=99.97  E-value=2.7e-30  Score=216.04  Aligned_cols=193  Identities=27%  Similarity=0.406  Sum_probs=172.3

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCC
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~   85 (204)
                      ..++++++|++++.+|++|..++...++.++..|+++++.+..++..+++.+  +++|.+..+|+++..+++.+......
T Consensus       190 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~~~~~  267 (504)
T PRK07514        190 DYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLPKFDPDAVLALM--PRATVMMGVPTFYTRLLQEPRLTREA  267 (504)
T ss_pred             HHhCCCCccEEEEecchHHHHHHHHHHHHHHhcCcEEEECCCCCHHHHHHHH--HhheeeecHHHHHHHHHcCCCCCccc
Confidence            4567889999999999999999988788999999999999989999999999  47999999999999998876666667


Q ss_pred             CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCC
Q 028779           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  165 (204)
Q Consensus        86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~  165 (204)
                      ++++|.++.||+++++++.+++.+.+ +.++++.||+||++.......  .......++|.|+++++++++||+++++++
T Consensus       268 ~~~lr~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~--~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~  344 (504)
T PRK07514        268 AAHMRLFISGSAPLLAETHREFQERT-GHAILERYGMTETNMNTSNPY--DGERRAGTVGFPLPGVSLRVTDPETGAELP  344 (504)
T ss_pred             ccceeeEEecCCCCCHHHHHHHHHHh-CCcceeecccccccccccCCc--cccccCcccccCCCCcEEEEEECCCCCCCC
Confidence            88999999999999999999999988 678999999999986654322  222345789999999999999999999999


Q ss_pred             CCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          166 PNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       166 ~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      .|+.|||+++|++++.|||++++.+++.|..+|||+||
T Consensus       345 ~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TG  382 (504)
T PRK07514        345 PGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITG  382 (504)
T ss_pred             CCCceEEEEecCCccccccCCchhhhhhcccCCCeeec
Confidence            99999999999999999999999999999888999997

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=99.97  E-value=3.7e-30  Score=221.14  Aligned_cols=197  Identities=29%  Similarity=0.379  Sum_probs=168.9

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC----CCHHHHHHHHHhcCceEEEechHHHHHHHhCCCC
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV   81 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~   81 (204)
                      ..++++++|++++.+|++|+.+....++.+|..|+++++.+.    +++..+++.|+++++|++.++|++++.|++....
T Consensus       280 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~  359 (637)
T PRK00174        280 YVFDYKDGDVYWCTADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDE  359 (637)
T ss_pred             hccCCCCCcEEEEcCCchHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCc
Confidence            346788899999999999999987778899999999999753    4899999999999999999999999999876432


Q ss_pred             --CCCCCccceeeeecCCCCCHHHHHHHHHhCCC--CcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEe
Q 028779           82 --KKFDLSSLKLVGSGAAPLGKELMEECAKNVPS--ATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVS  157 (204)
Q Consensus        82 --~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~--~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d  157 (204)
                        ...++++||.++++|+++++++.+++.+.++.  +++++.||+||++...+...........+++|+|+++++++|+|
T Consensus       360 ~~~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d  439 (637)
T PRK00174        360 HPKKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMITPLPGATPLKPGSATRPLPGIQPAVVD  439 (637)
T ss_pred             ccccCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCCceEecCCCCCCcCCCcccCCCCCceEEEEC
Confidence              33567899999999999999999999998853  78999999999987665433322234567899999999999999


Q ss_pred             CCCCCCCCCCCcceEEEec--CCcchhhcCCccccccccc--hhhhcccc
Q 028779          158 VDTQKPLPPNQLGEIWLRG--PNMMRGIMLIASIILSSWG--FRKIMHSF  203 (204)
Q Consensus       158 ~~~~~~~~~g~~Gel~v~g--~~~~~gY~~~~~~t~~~~~--~~gw~~~~  203 (204)
                       +++++++.|+.|||+++|  |+++.|||++++.+.+.+.  .+|||+||
T Consensus       440 -~~g~~~~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TG  488 (637)
T PRK00174        440 -EEGNPLEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMYFTG  488 (637)
T ss_pred             -CCCCCCCCCCcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEEECC
Confidence             889999999999999999  6999999999998877653  47999997

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=99.97  E-value=1.1e-30  Score=217.09  Aligned_cols=187  Identities=28%  Similarity=0.340  Sum_probs=162.0

Q ss_pred             CCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhC-------C-----
Q 028779           12 LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH-------G-----   79 (204)
Q Consensus        12 ~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~-------~-----   79 (204)
                      .+|++++.+||.|++.-+. ....++.|+++.+..+ |+..+.+.|++.++|.+.++|-.++.+-+.       .     
T Consensus       301 ~~dv~lSyLPLAHi~er~~-~~~~~~~G~~IgF~~g-D~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr  378 (691)
T KOG1256|consen  301 GDDVYLSYLPLAHIFERVV-ELYTFYIGAKIGFARG-DILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKR  378 (691)
T ss_pred             cCceEEEeCcHHHHHHHHH-HHhHhhcccEEEEecC-ChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHH
Confidence            3699999999999999998 5566789999999874 999999999999999999999988776421       0     


Q ss_pred             --------------CCCC-----CCC--------------ccceeeeecCCCCCHHHHHHHHHhCCCCcEEccccccccc
Q 028779           80 --------------LVKK-----FDL--------------SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETS  126 (204)
Q Consensus        80 --------------~~~~-----~~l--------------~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~  126 (204)
                                    ..+.     ..+              .++|.+++|++|+++++.+.++..+ +++++++||+||++
T Consensus       379 ~l~~~A~~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~-g~~v~eGYGlTEts  457 (691)
T KOG1256|consen  379 KLFNFAMAYKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAAL-GCRVLEGYGLTETS  457 (691)
T ss_pred             HHHHHHHHHHHHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhc-CceeeecccccccC
Confidence                          0000     100              4899999999999999999999998 89999999999999


Q ss_pred             ccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          127 GIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      +.++...+++  ...+++|.|+|+++++++|++..+.-+.|..|||++||++++.|||++|++|+++++.|||||||
T Consensus       458 ~g~~~~~~~d--~~lgsvG~p~p~~~vKL~dvpe~ny~a~~~~GEIcirG~~Vf~GYyK~p~~T~e~ideDGWLhTG  532 (691)
T KOG1256|consen  458 AGTTLTLPGD--NVLGSVGPPVPGNEVKLVDVPEMNYDADGSKGEICVRGPNVFMGYYKDPEKTAEAIDEDGWLHTG  532 (691)
T ss_pred             CceEeccCCC--CCCCCcCCcccCceEEEechHHhCcCcCCCcceEEEecchhceeccCChHHHhhhhccccccccc
Confidence            7766665555  37889999999999999998888888888899999999999999999999999999999999998

>PRK07529 AMP-binding domain protein; Validated

Probab=99.97  E-value=5.4e-30  Score=219.89  Aligned_cols=193  Identities=26%  Similarity=0.430  Sum_probs=164.3

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC--C-C---HHHHHHHHHhcCceEEEechHHHHHHHhCC
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--F-D---LEMFLRAIEKHRVTHIWVVPPLILALAKHG   79 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~--~-~---~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~   79 (204)
                      ..++++++|++++.+|++|++++...++.++..|+++++.+.  + +   ...+++.++++++|++.++|+++..|++.+
T Consensus       247 ~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~  326 (632)
T PRK07529        247 LLLGLGPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVP  326 (632)
T ss_pred             HhcCCCCCCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCc
Confidence            345678999999999999999998878999999999999863  2 2   368899999999999999999999998875


Q ss_pred             CCCCCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEE--e
Q 028779           80 LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIV--S  157 (204)
Q Consensus        80 ~~~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~--d  157 (204)
                      . ...++++||.+++||+++++++.+++++.+ ++++++.||+||++..+...... .....+++|+|+|+++++++  |
T Consensus       327 ~-~~~~~~slr~v~~gg~~l~~~l~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~-~~~~~~svG~~~p~~~v~i~~~d  403 (632)
T PRK07529        327 V-DGHDISSLRYALCGAAPLPVEVFRRFEAAT-GVRIVEGYGLTEATCVSSVNPPD-GERRIGSVGLRLPYQRVRVVILD  403 (632)
T ss_pred             c-cCCCccceEEEEEcCCCCCHHHHHHHHHHh-CCcEeeeecccccCcccccCCcc-ccccCCCcccccCCceEEEEEcC
Confidence            3 234678999999999999999999999988 79999999999998776654332 23467899999999999985  5


Q ss_pred             CCCC---CCCCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          158 VDTQ---KPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       158 ~~~~---~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                       +++   +++++|+.|||+++||+++.||++++ .+.+.|..+||||||
T Consensus       404 -~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~-~~~~~~~~~gw~~TG  450 (632)
T PRK07529        404 -DAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAA-HNKGLWLEDGWLNTG  450 (632)
T ss_pred             -CCCcccccCCCCCceEEEEECCCccccccCCc-cccccccCCCceEcC
Confidence             556   78999999999999999999999865 555666568999997

>PRK12583 acyl-CoA synthetase; Provisional

Probab=99.97  E-value=5.2e-30  Score=216.85  Aligned_cols=197  Identities=27%  Similarity=0.394  Sum_probs=173.7

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEc-CCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCC
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~   84 (204)
                      ..++++++|++++.+|++|.++....++.++..|+++++. ..+++..+++.++++++|+++++|+++..+++.......
T Consensus       235 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~  314 (558)
T PRK12583        235 ESLGLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNF  314 (558)
T ss_pred             HHhCCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccCC
Confidence            4467888999999999999999988889999999999975 457999999999999999999999999988877655566


Q ss_pred             CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCC-CCCCCCCccccCCCceEEEEeCCCCCC
Q 028779           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA-GSRNIGSAGALAPGVEALIVSVDTQKP  163 (204)
Q Consensus        85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~-~~~~~~~~G~p~~~~~v~v~d~~~~~~  163 (204)
                      +++++|.++++|+++++++.+++.+.++...+++.||+||++.+........ ......++|+|+++++++++|++ +++
T Consensus       315 ~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~-~~~  393 (558)
T PRK12583        315 DLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVDPD-GAT  393 (558)
T ss_pred             CchhheEEEecCCCCCHHHHHHHHHHcCCcceeccccccccccceeccCcccccccccCCCCccCCCCeEEEECCC-CCC
Confidence            7889999999999999999999999997788999999999998776543221 12346789999999999999955 899


Q ss_pred             CCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          164 LPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       164 ~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      ++.|+.|||+++|+.++.||+++++.+.+.|..+|||+|+
T Consensus       394 ~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TG  433 (558)
T PRK12583        394 VPRGEIGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTG  433 (558)
T ss_pred             CCCCCeeEEEEEeCccchhhcCChHHHHhhcCCCCCeecc
Confidence            9999999999999999999999999998888678999997

>PRK07638 acyl-CoA synthetase; Validated

Probab=99.97  E-value=6.6e-30  Score=213.09  Aligned_cols=190  Identities=18%  Similarity=0.232  Sum_probs=166.2

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCC
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~   85 (204)
                      ..++++++|+++...|++|..++.. ++.++..|+++++.+.+++..+++.++++++|++.++|+++..|.+...   . 
T Consensus       177 ~~~~~~~~d~~~~~~~l~~~~~l~~-~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---~-  251 (487)
T PRK07638        177 HDFHMKREDSVLIAGTLVHSLFLYG-AISTLYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKENR---V-  251 (487)
T ss_pred             HhcCcCCCCEEEEeecchHHHHHHH-HHHHHccCcEEEEcCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC---c-
Confidence            4567889999999999999987765 7889999999999999999999999999999999999999999987632   2 


Q ss_pred             CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCC
Q 028779           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  165 (204)
Q Consensus        86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~  165 (204)
                      ..+.+.++++|++++.++.+++.+.+++.++++.||+||++.++.... ........++|+|+++++++|+| ++|++++
T Consensus       252 ~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~-~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~  329 (487)
T PRK07638        252 IENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVD-EESERRPNSVGRPFHNVQVRICN-EAGEEVQ  329 (487)
T ss_pred             CCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecc-cccCCCCCCCCcccCCcEEEEEC-CCCCCCC
Confidence            345667788999999999999999999999999999999987765543 22234567899999999999999 8899999


Q ss_pred             CCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          166 PNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       166 ~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      +|+.|||+++|+.++.|||++++.+.+.+. +|||+||
T Consensus       330 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TG  366 (487)
T PRK07638        330 KGEIGTVYVKSPQFFMGYIIGGVLARELNA-DGWMTVR  366 (487)
T ss_pred             CCCCeEEEEecccceeeecCCHHHHhhhcc-CCcEecC
Confidence            999999999999999999999988776555 8999997

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=99.97  E-value=5.4e-30  Score=216.42  Aligned_cols=195  Identities=26%  Similarity=0.308  Sum_probs=170.7

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCC
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~   85 (204)
                      ..++++++|++++.+|++|.+++...++.+++.|+++++.+.+++..+++.++++++++++.+|+++..+++.......+
T Consensus       221 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~  300 (547)
T PRK06087        221 ARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPAD  300 (547)
T ss_pred             HhcCCCCCCeEEEecchHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCCCC
Confidence            34577899999999999999998877889999999999999999999999999999999999888888887765545567


Q ss_pred             CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCC
Q 028779           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  165 (204)
Q Consensus        86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~  165 (204)
                      ++++|.+++||+++++++.+.+.+.  ++++++.||+||++.++.............++|+|+++++++++| +++++++
T Consensus       301 ~~~lr~i~~gG~~~~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~  377 (547)
T PRK06087        301 LSALRFFLCGGTTIPKKVARECQQR--GIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVD-EARKTLP  377 (547)
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHc--CCcEEEEecccccCCccccCCCcchhhcCCcCCccCCCceEEEEc-CCCCCCc
Confidence            7899999999999999999998775  789999999999987765443222123345789999999999999 8899999


Q ss_pred             CCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          166 PNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       166 ~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      +|+.|||+++|++++.|||++++.+...+..+|||+|+
T Consensus       378 ~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TG  415 (547)
T PRK06087        378 PGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSG  415 (547)
T ss_pred             CCCcceEEEecccccccccCCHHHHHHHhCCCCCcCcC
Confidence            99999999999999999999999999988888999997

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=7.9e-30  Score=216.18  Aligned_cols=187  Identities=23%  Similarity=0.398  Sum_probs=164.9

Q ss_pred             CcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCCcccee
Q 028779           13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL   91 (204)
Q Consensus        13 ~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~   91 (204)
                      .+++++.+|++|.+++...++.++..|+++++.+ ..++..+++.++++++|+++++|+++..+++.......+++++|.
T Consensus       251 ~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~  330 (562)
T PRK05677        251 CEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLDFSALKL  330 (562)
T ss_pred             ccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccccCChhhceE
Confidence            4788999999999998876788888898877765 578999999999999999999999999998865544556779999


Q ss_pred             eeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCCCcce
Q 028779           92 VGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGE  171 (204)
Q Consensus        92 ~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~~g~~Ge  171 (204)
                      +++||+++++++.+++++.+ ++++++.||+||++.+.......  ....+++|+|+++++++++| ++++++++|+.||
T Consensus       331 v~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~--~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g~~Ge  406 (562)
T PRK05677        331 TLSGGMALQLATAERWKEVT-GCAICEGYGMTETSPVVSVNPSQ--AIQVGTIGIPVPSTLCKVID-DDGNELPLGEVGE  406 (562)
T ss_pred             EEEcCccCCHHHHHHHHHHc-CCCeeccCCccccCcceeecCcc--CCCCCccCccCCCCEEEEEC-CCCCCCCCCCCeE
Confidence            99999999999999999987 78999999999998776554332  23457899999999999999 6789999999999


Q ss_pred             EEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          172 IWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       172 l~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      |+++|++++.|||++++.|++.|..+|||+||
T Consensus       407 l~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TG  438 (562)
T PRK05677        407 LCVKGPQVMKGYWQRPEATDEILDSDGWLKTG  438 (562)
T ss_pred             EEEecCccchhhcCCchhhhhccCCCCccccc
Confidence            99999999999999999999999889999997

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.97  E-value=7.2e-30  Score=212.45  Aligned_cols=191  Identities=26%  Similarity=0.349  Sum_probs=166.4

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCC
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~   85 (204)
                      ..++++++|++++.+|++|++++.. ++.++..|+++++.+..++..+++.++++++|++.++|+++..|++..... ..
T Consensus       175 ~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~  252 (483)
T PRK03640        175 LNLGLTEDDCWLAAVPIFHISGLSI-LMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG-TY  252 (483)
T ss_pred             HhcCCCcCcEEEEecCHHHHHHHHH-HHHHHhcCCEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc-cc
Confidence            3467889999999999999999887 788999999999999999999999999999999999999999998654322 33


Q ss_pred             CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCC
Q 028779           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  165 (204)
Q Consensus        86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~  165 (204)
                      ..++|.++++|+++++.+.+.+++.  ++++++.||+||++...............+++|+|++++++++.| +. ++++
T Consensus       253 ~~~lr~~~~~g~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~~-~~-~~~~  328 (483)
T PRK03640        253 PSSFRCMLLGGGPAPKPLLEQCKEK--GIPVYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEK-DG-VVVP  328 (483)
T ss_pred             CCcceEEEEcCCCCCHHHHHHHHHh--CCCeeeeeccCcccccccccCcccccccCCCcccccCCcEEEEec-CC-CcCC
Confidence            4699999999999999999998875  789999999999876544433333345668899999999999998 43 7899


Q ss_pred             CCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          166 PNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       166 ~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      +|+.|||+++|+.++.|||++++.+.+.|. +|||+|+
T Consensus       329 ~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~-~~~~~tG  365 (483)
T PRK03640        329 PFEEGEIVVKGPNVTKGYLNREDATRETFQ-DGWFKTG  365 (483)
T ss_pred             CCCceEEEEECcchhhhhcCCHHHHHHHHh-cCCeecc
Confidence            999999999999999999999999988887 8999997

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=99.97  E-value=3.4e-30  Score=221.55  Aligned_cols=192  Identities=21%  Similarity=0.232  Sum_probs=162.8

Q ss_pred             ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC--CC----HHHHHHHHHhcCceEEEechHHHHHHHhCCC-
Q 028779            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--FD----LEMFLRAIEKHRVTHIWVVPPLILALAKHGL-   80 (204)
Q Consensus         8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~--~~----~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~-   80 (204)
                      +....+|++++..|++|+.+... ++.+|..|+++++.++  +.    +..+++.++++++|++.++|++++.|++... 
T Consensus       291 ~~~~~~d~~~~~~~~~w~~~~~~-~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~  369 (647)
T PTZ00237        291 IEKDIPTVVFSHSSIGWVSFHGF-LYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPE  369 (647)
T ss_pred             cCCCCCcEEEEcCCCceEeeHHH-HHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCcc
Confidence            45677899999999999976654 8899999999998764  22    7899999999999999999999999987532 


Q ss_pred             ----CCCCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEE
Q 028779           81 ----VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIV  156 (204)
Q Consensus        81 ----~~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~  156 (204)
                          ....++++||.++++|+++++++.+++++.+ ++++++.||+||++........ ......+++|+|+|+++++|+
T Consensus       370 ~~~~~~~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~-g~~i~~~yG~TE~~~~~~~~~~-~~~~~~~s~G~p~~g~~~~i~  447 (647)
T PTZ00237        370 ATIIRSKYDLSNLKEIWCGGEVIEESIPEYIENKL-KIKSSRGYGQTEIGITYLYCYG-HINIPYNATGVPSIFIKPSIL  447 (647)
T ss_pred             ccccccccCcchheEEEecCccCCHHHHHHHHHhc-CCCEEeeechHHhChhhhccCC-CCCCCCCCCccCcCCceEEEE
Confidence                2345788999999999999999999999988 6899999999999866543322 122344789999999999999


Q ss_pred             eCCCCCCCCCCCcceEEEecC---CcchhhcCCccccccccc-hhhhcccc
Q 028779          157 SVDTQKPLPPNQLGEIWLRGP---NMMRGIMLIASIILSSWG-FRKIMHSF  203 (204)
Q Consensus       157 d~~~~~~~~~g~~Gel~v~g~---~~~~gY~~~~~~t~~~~~-~~gw~~~~  203 (204)
                      | ++|++++.|+.|||++++|   +++.|||++++.+.+.|. .+||||||
T Consensus       448 d-~~g~~~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~~~g~~~TG  497 (647)
T PTZ00237        448 S-EDGKELNVNEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPGYYNSG  497 (647)
T ss_pred             C-CCCCCCCCCCceEEEEeccCCchhhCceeCCHHHHHHHHhCCCCEEECC
Confidence            9 7899999999999999986   789999999999988775 37999997

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=1.5e-29  Score=213.61  Aligned_cols=192  Identities=27%  Similarity=0.409  Sum_probs=168.0

Q ss_pred             ccC-CCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC--CCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCC
Q 028779            8 TAG-ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (204)
Q Consensus         8 ~~~-~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~   84 (204)
                      +++ .++|++++.+|++|++++.. ++.++..|+++++.+  .+++..+++.++++++|.++++|+++..+++.......
T Consensus       210 ~~~~~~~~~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~  288 (542)
T PRK07786        210 NGADINSDVGFVGVPLFHIAGIGS-MLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPR  288 (542)
T ss_pred             cCCCCCCceEEEecchHHHHHHHH-HHHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCcc
Confidence            344 57899999999999999866 888999999999865  57999999999999999999999999999876543333


Q ss_pred             CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 028779           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL  164 (204)
Q Consensus        85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~  164 (204)
                      + .++|.+++||+++++++++++.+.|++.++++.||+||++.+..............++|+|++++.++|+| ++++++
T Consensus       289 ~-~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~  366 (542)
T PRK07786        289 D-LALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVD-ENMNDV  366 (542)
T ss_pred             C-cceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceEecCcccccccCCCccccCCCceEEEEC-CCCCCC
Confidence            3 37999999999999999999999999999999999999987765543333334567899999999999999 788999


Q ss_pred             CCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          165 PPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       165 ~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      ++|+.|||+++|+.+++||+++++.+.+.|. +|||+|+
T Consensus       367 ~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f~-~~~~~TG  404 (542)
T PRK07786        367 PVGEVGEIVYRAPTLMSGYWNNPEATAEAFA-GGWFHSG  404 (542)
T ss_pred             cCCCceEEEEEChhhhhhhcCCHHHHHHHhh-CCccccc
Confidence            9999999999999999999999999999887 8999997

>PRK07787 acyl-CoA synthetase; Validated

Probab=99.97  E-value=1.1e-29  Score=211.02  Aligned_cols=193  Identities=24%  Similarity=0.345  Sum_probs=168.2

Q ss_pred             cccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCC
Q 028779            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (204)
Q Consensus         5 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~   84 (204)
                      ...++++++|++++.+|++|++++...++.++..|+++++.+.+++..+++.++ +++|++.++|+++..+.+.... ..
T Consensus       161 ~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~~-~~  238 (471)
T PRK07787        161 AEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPEA-AR  238 (471)
T ss_pred             HHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecCCCCHHHHHHHHh-hCceEEEcchHHHHHHHhCccc-cc
Confidence            345678889999999999999999988999999999999998899999999999 9999999999999999875432 34


Q ss_pred             CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 028779           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL  164 (204)
Q Consensus        85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~  164 (204)
                      .++++|.++.||+++++++.+++++.+ +.++++.||+||++........  ......++|+|+++++++|+| ++++++
T Consensus       239 ~l~~l~~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~--~~~~~~~vG~~~~g~~~~i~d-~~~~~~  314 (471)
T PRK07787        239 ALRGARLLVSGSAALPVPVFDRLAALT-GHRPVERYGMTETLITLSTRAD--GERRPGWVGLPLAGVETRLVD-EDGGPV  314 (471)
T ss_pred             cccceeEEEECCCCCCHHHHHHHHHHc-CCCeecccCccccCcceecCCC--CcccCCcccccCCCcEEEEEC-CCCCCC
Confidence            578999999999999999999999988 6899999999999865443322  223457899999999999999 668888


Q ss_pred             C-CCC-cceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          165 P-PNQ-LGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       165 ~-~g~-~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      + .|+ .|||+++|+.++.|||++++.+++.|..+||||||
T Consensus       315 ~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TG  355 (471)
T PRK07787        315 PHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTG  355 (471)
T ss_pred             CCCCCCceEEEEECcccchhhcCChhhchhcccCCCceecC
Confidence            6 344 89999999999999999999999999888999997

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.97  E-value=7.3e-31  Score=204.19  Aligned_cols=198  Identities=25%  Similarity=0.323  Sum_probs=178.3

Q ss_pred             cccccccCCCCcEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCC
Q 028779            3 TMDQETAGELDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV   81 (204)
Q Consensus         3 ~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~   81 (204)
                      +..+..+++.++++++.+|..|-+.+.. ..+..++.|+++|+.+..+|.....+|++++||+.-++|.....+++..+.
T Consensus       220 aSaEiC~~~~~tvyL~~LP~AHNfplssPG~LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~  299 (542)
T COG1021         220 ASAEICGFDQQTVYLCALPAAHNFPLSSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEW  299 (542)
T ss_pred             ehhhhhCcCccceEEEecccccCCCCCCcchhheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhc
Confidence            4566788999999999999999988776 788999999999999999999999999999999999999999999999888


Q ss_pred             CCCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccC-CCceEEEEeCCC
Q 028779           82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALA-PGVEALIVSVDT  160 (204)
Q Consensus        82 ~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~-~~~~v~v~d~~~  160 (204)
                      ...+++|||.+-+||..+++.+.+++...+ ++.+-+.|||.|--.. ....++....-..+.|+|+ |+=+++|+| ++
T Consensus       300 ~~~~LsSLrllQVGGarl~~~~Arrv~~~l-gC~LQQVFGMAEGLvn-yTRLDDp~E~i~~TQGrPlsP~DEvrvvD-~d  376 (542)
T COG1021         300 ERADLSSLRLLQVGGARLSATLARRVPAVL-GCQLQQVFGMAEGLVN-YTRLDDPPEIIIHTQGRPLSPDDEVRVVD-AD  376 (542)
T ss_pred             ccCCchheeEEeecCcccCHHHHhhchhhh-CchHHHHhhhhhhhhc-ccccCCchHheeecCCCcCCCcceeEEec-CC
Confidence            999999999999999999999999999999 8999999999995333 3222333234456899997 778899999 99


Q ss_pred             CCCCCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          161 QKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       161 ~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      |++|++||+|+|..|||..++|||+.|+.+.++|+.+|+++||
T Consensus       377 g~pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsG  419 (542)
T COG1021         377 GNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSG  419 (542)
T ss_pred             CCCCCCCCcceeeecCCeeeeeeccCchhhhhccCcCCceecC
Confidence            9999999999999999999999999999999999999999997

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=99.97  E-value=1.2e-29  Score=217.62  Aligned_cols=197  Identities=21%  Similarity=0.227  Sum_probs=166.1

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC----CCHHHHHHHHHhcCceEEEechHHHHHHHhCCC-
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL-   80 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~-   80 (204)
                      ..++++++|++++.+|++|+.++...++++|+.|+++++.+.    +++..+++.++++++|+++.+|++++.|.+... 
T Consensus       267 ~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~  346 (628)
T TIGR02316       267 AIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAA  346 (628)
T ss_pred             HhcCCCCCcEEEEcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCc
Confidence            346788999999999999999987768899999999999763    489999999999999999999999999987643 


Q ss_pred             -CCCCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCC--CCCCCCCCccccCCCceEEEEe
Q 028779           81 -VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSF--AGSRNIGSAGALAPGVEALIVS  157 (204)
Q Consensus        81 -~~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~--~~~~~~~~~G~p~~~~~v~v~d  157 (204)
                       ....++++||.++++|+++++++.+++++.+ +..+++.||+||++.........  ......+++|+|+|+++++|+|
T Consensus       347 ~~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~-~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d  425 (628)
T TIGR02316       347 WLRKHDLSSLHWLFLAGEPLDEPTAHWITDGL-GKPVIDNYWQTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLD  425 (628)
T ss_pred             ccccCCccceeEEEEecCCCCHHHHHHHHHHh-CCCEEecccccccCceeecCCCCCCcCCCCCCCcccCcCCceEEEEE
Confidence             2345788999999999999999999999988 68899999999998544332221  1123457899999999999999


Q ss_pred             CCCCCCCCCCCcceEEEecC---CcchhhcCCccccccccc---hhhhcccc
Q 028779          158 VDTQKPLPPNQLGEIWLRGP---NMMRGIMLIASIILSSWG---FRKIMHSF  203 (204)
Q Consensus       158 ~~~~~~~~~g~~Gel~v~g~---~~~~gY~~~~~~t~~~~~---~~gw~~~~  203 (204)
                      +++|++++.|+.|||+++||   +.+.|||++++.+.+.+.   .++||+||
T Consensus       426 ~~~g~~~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~TG  477 (628)
T TIGR02316       426 EATGRPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSF  477 (628)
T ss_pred             CCCCCCCCCCCcEEEEEecCCCccccccccCChHHHHHhhhhcCCCCEEECC
Confidence            66899999999999999998   578999999988776542   36799997

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PRK09088 acyl-CoA synthetase; Validated

Probab=99.97  E-value=2.3e-29  Score=209.86  Aligned_cols=193  Identities=23%  Similarity=0.343  Sum_probs=167.7

Q ss_pred             ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHH--hcCceEEEechHHHHHHHhCCCCCCCC
Q 028779            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIE--KHRVTHIWVVPPLILALAKHGLVKKFD   85 (204)
Q Consensus         8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~--~~~~t~~~~~p~~~~~l~~~~~~~~~~   85 (204)
                      ..+.++|++++.+|++|++++...+++++..|+++++.+.+++...+..+.  ++++|.++.+|+++..+.+.+......
T Consensus       171 ~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~  250 (488)
T PRK09088        171 GRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPGFDAAA  250 (488)
T ss_pred             hCCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcCcCccc
Confidence            457789999999999999999887888999999999998889999998886  489999999999999998876555566


Q ss_pred             CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCC-CCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 028779           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS-FAGSRNIGSAGALAPGVEALIVSVDTQKPL  164 (204)
Q Consensus        86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~-~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~  164 (204)
                      ++++|.+++||++++.+..+++.+.  ++++++.||+||++.+...... .......+++|.|.|+++++|+| ++++++
T Consensus       251 ~~~l~~~~~gG~~~~~~~~~~~~~~--g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~~  327 (488)
T PRK09088        251 LRHLTALFTGGAPHAAEDILGWLDD--GIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVD-DQGNDC  327 (488)
T ss_pred             cccceEEEecCCCCCHHHHHHHHHh--CCceeeeecccccccccccCCCcccccccCCccccCCCCcEEEEEC-CCCCCC
Confidence            7899999999999999998888765  7899999999999875433211 11123557899999999999999 789999


Q ss_pred             CCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          165 PPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       165 ~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      +.|+.|||+++|+.++.||+++++.+++.+..+|||+||
T Consensus       328 ~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TG  366 (488)
T PRK09088        328 PAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTG  366 (488)
T ss_pred             cCCCceEEEEECCccchhhcCChhhhhhhhcCCCCeeec
Confidence            999999999999999999999999999989889999997

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=99.97  E-value=2e-29  Score=213.73  Aligned_cols=188  Identities=26%  Similarity=0.442  Sum_probs=165.5

Q ss_pred             CcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCCcccee
Q 028779           13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL   91 (204)
Q Consensus        13 ~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~   91 (204)
                      ++++++.+|++|++++...++..+..|+++++.. ..++..+++.++++++|++..+|+++..|++.+.....+++++|.
T Consensus       258 ~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~  337 (562)
T PRK12492        258 QEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFSALKL  337 (562)
T ss_pred             CeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCcccccccceeE
Confidence            4678999999999999877778888999877664 468999999999999999999999999998877656667889999


Q ss_pred             eeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCCCcce
Q 028779           92 VGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGE  171 (204)
Q Consensus        92 ~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~~g~~Ge  171 (204)
                      ++++|+++++.+.+++++.+ ++++++.||+||++.++....... ....+++|+|+++++++|+| ++++++++|+.||
T Consensus       338 ~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~-~~~~~~~G~p~~~~~v~ivd-~~~~~~~~g~~Ge  414 (562)
T PRK12492        338 TNSGGTALVKATAERWEQLT-GCTIVEGYGLTETSPVASTNPYGE-LARLGTVGIPVPGTALKVID-DDGNELPLGERGE  414 (562)
T ss_pred             EEeccccCCHHHHHHHHHHh-CCceeeccCccccCceeeecCCcc-cccCCccceecCCCEEEEEC-CCCCCCCCCCceE
Confidence            99999999999999999887 799999999999988766543222 23457899999999999999 7889999999999


Q ss_pred             EEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          172 IWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       172 l~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      |+++|+.++.|||++++.+++.|..+|||+||
T Consensus       415 l~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TG  446 (562)
T PRK12492        415 LCIKGPQVMKGYWQQPEATAEALDAEGWFKTG  446 (562)
T ss_pred             EEEeCCccccccccCchhhhhcccCCCceecC
Confidence            99999999999999999999999778999997

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=2.2e-29  Score=213.80  Aligned_cols=189  Identities=28%  Similarity=0.390  Sum_probs=169.2

Q ss_pred             CCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCCcccee
Q 028779           12 LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL   91 (204)
Q Consensus        12 ~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~   91 (204)
                      .+|++++.+|++|.+++...++.++..|+++++.+..+++.+++.++++++|++.++|++++.|++.......+++++|.
T Consensus       261 ~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~  340 (573)
T PRK05605        261 GPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLSGVRN  340 (573)
T ss_pred             CCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCCCchhccE
Confidence            47899999999999999887788899999999998889999999999999999999999999999877666677889999


Q ss_pred             eeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCC-CCCCCCCCcc
Q 028779           92 VGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDT-QKPLPPNQLG  170 (204)
Q Consensus        92 ~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~-~~~~~~g~~G  170 (204)
                      ++++|+++++++.+++.+.+ +..+++.||+||++++........ ....+++|+|++++.++|+|+++ +++++.|+.|
T Consensus       341 i~~gg~~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~~G  418 (573)
T PRK05605        341 AFSGAMALPVSTVELWEKLT-GGLLVEGYGLTETSPIIVGNPMSD-DRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEG  418 (573)
T ss_pred             EEECCCcCCHHHHHHHHHHh-CCCeecccccchhchhhhcCCccc-CCcCCccccCCCCCEEEEEcCCCCCccCCCCCee
Confidence            99999999999999999887 688999999999987766543322 24457899999999999999666 6899999999


Q ss_pred             eEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          171 EIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       171 el~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      ||+++|+.++.||+++++.+.+.|. +|||+|+
T Consensus       419 el~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TG  450 (573)
T PRK05605        419 ELLVRGPQVFKGYWNRPEETAKSFL-DGWFRTG  450 (573)
T ss_pred             EEEEecCchhhhhcCChhHhhhccc-CCCcccC
Confidence            9999999999999999999998887 6899997

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=99.97  E-value=1.7e-29  Score=212.97  Aligned_cols=196  Identities=22%  Similarity=0.296  Sum_probs=169.1

Q ss_pred             cccccCCCCcEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhC--CCC
Q 028779            5 DQETAGELDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH--GLV   81 (204)
Q Consensus         5 ~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~--~~~   81 (204)
                      ...++++++|++++.+|++|.+++.. .++.++..|+++++.+.+++..+++.++++++|++.++|+++..+++.  ...
T Consensus       215 ~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~  294 (536)
T PRK10946        215 VEICGFTPQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGG  294 (536)
T ss_pred             HHhcCCCCCceEEEecCccccccchhhhHHHHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccC
Confidence            34567889999999999999988764 477889999999999889999999999999999999999999999875  223


Q ss_pred             CCCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccC-CCceEEEEeCCC
Q 028779           82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALA-PGVEALIVSVDT  160 (204)
Q Consensus        82 ~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~-~~~~v~v~d~~~  160 (204)
                      ....++++|.+++||+++++++.+++.+.+ ++++++.||+||+....... .........++|+|+ |++.++++| ++
T Consensus       295 ~~~~~~~l~~v~~gg~~l~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~-~~~~~~~~~~~G~p~~~~~~v~i~d-~~  371 (536)
T PRK10946        295 SRAQLASLKLLQVGGARLSETLARRIPAEL-GCQLQQVFGMAEGLVNYTRL-DDSDERIFTTQGRPMSPDDEVWVAD-AD  371 (536)
T ss_pred             ccccccceeEEEECCCCCCHHHHHHHHHhc-CCeEEEeecccccceeeecC-CCccccccccCCcccCCCceEEEEC-CC
Confidence            345578999999999999999999999988 78999999999965443322 112223457899998 899999999 88


Q ss_pred             CCCCCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          161 QKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       161 ~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      ++++++|+.|||+++|+.++.|||++++.+.+.|..+|||+||
T Consensus       372 ~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TG  414 (536)
T PRK10946        372 GNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSG  414 (536)
T ss_pred             CCCCCCCCccEEEEecCccchhhcCCcccchhhcccCCceecC
Confidence            9999999999999999999999999999999999889999997

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=99.97  E-value=1.1e-29  Score=217.38  Aligned_cols=182  Identities=22%  Similarity=0.212  Sum_probs=152.6

Q ss_pred             CCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC-CCH---HHHHHHHHhcCceEEEechHHHHHHHhCC----CCCC
Q 028779           12 LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDL---EMFLRAIEKHRVTHIWVVPPLILALAKHG----LVKK   83 (204)
Q Consensus        12 ~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~-~~~---~~~~~~i~~~~~t~~~~~p~~~~~l~~~~----~~~~   83 (204)
                      .+|++++.+|++|++++...++.+++.|+++++.+. +++   ..+++.++++++|+++++|+++..|++..    ....
T Consensus       251 ~~~~~l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~  330 (614)
T PRK08180        251 EPPVLVDWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRR  330 (614)
T ss_pred             CCcEEEEecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhh
Confidence            568999999999999987778889999999999763 444   46788899999999999999999887642    2223


Q ss_pred             CCCccceeeeecCCCCCHHHHHHHHHh----CC-CCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeC
Q 028779           84 FDLSSLKLVGSGAAPLGKELMEECAKN----VP-SATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSV  158 (204)
Q Consensus        84 ~~l~~lr~~~~~G~~l~~~~~~~~~~~----~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~  158 (204)
                      ..+++||.+++||+++++++.+++.+.    ++ ++++++.||+||++.+++.....  ....+++|+|+|+++++++| 
T Consensus       331 ~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~--~~~~~svG~p~pg~~v~i~d-  407 (614)
T PRK08180        331 RFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETAPSATFTTGP--LSRAGNIGLPAPGCEVKLVP-  407 (614)
T ss_pred             hhccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeecccccCCceEecccc--cCCCCcccCccCCcEEEEec-
Confidence            457899999999999999999999875    32 37899999999998766543322  24567999999999999998 


Q ss_pred             CCCCCCCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          159 DTQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       159 ~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      +       |..|||+++|++++.|||++++.|++.|..+||||||
T Consensus       408 ~-------~~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~TG  445 (614)
T PRK08180        408 V-------GGKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSG  445 (614)
T ss_pred             C-------CCCcEEEEecCccchhhcCChhHhHhhcccCCceecc
Confidence            3       3459999999999999999999999999878999997

>PRK06060 acyl-CoA synthetase; Validated

Probab=99.97  E-value=1.8e-29  Score=219.08  Aligned_cols=189  Identities=17%  Similarity=0.225  Sum_probs=164.2

Q ss_pred             cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCC
Q 028779            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (204)
Q Consensus         7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~   85 (204)
                      .+++.++|++++..|++|.+++...++.+|..|+++++.+ .+++..+.+.++++++|+++++|+++..+++...  ..+
T Consensus       181 ~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~  258 (705)
T PRK06060        181 ALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCS--PDS  258 (705)
T ss_pred             hhCCCCcceeEEeccchhhcchhHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhcc--ccc
Confidence            4678889999999999999988666788999999999986 4789999999999999999999999999987543  345


Q ss_pred             CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCC
Q 028779           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  165 (204)
Q Consensus        86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~  165 (204)
                      ++++|.+++||+++++++.+++.+.|++.++++.||+||++.........  .....++|+|+++++++|+| +++++++
T Consensus       259 ~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~--~~~~~~iG~p~~~~~v~i~d-~~g~~~~  335 (705)
T PRK06060        259 FRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVD--EWRLGTLGRVLPPYEIRVVA-PDGTTAG  335 (705)
T ss_pred             ccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEeccCC--CCCcCcccccCCCcEEEEEC-CCCCCCC
Confidence            68999999999999999999999999889999999999998665433222  23467899999999999999 7799999


Q ss_pred             CCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          166 PNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       166 ~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      .|+.|||+++|++++.|||++++.+.   ..+|||+||
T Consensus       336 ~g~~GEl~i~g~~v~~GY~~~~~~~~---~~~~~~~TG  370 (705)
T PRK06060        336 PGVEGDLWVRGPAIAKGYWNRPDSPV---ANEGWLDTR  370 (705)
T ss_pred             CCCceEEEEccchhhhhhhCCCcccc---cCCCcEECC
Confidence            99999999999999999999998753   347999997

>PRK06188 acyl-CoA synthetase; Validated

Probab=99.97  E-value=2.5e-29  Score=211.35  Aligned_cols=193  Identities=30%  Similarity=0.414  Sum_probs=169.6

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCC
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~   85 (204)
                      ..++++++|++++.+|++|.+++.  ++.+++.|+++++.+.+++..+++.++++++|+++++|+++..+++.+.....+
T Consensus       202 ~~~~~~~~~~~l~~~pl~~~~g~~--~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~  279 (524)
T PRK06188        202 AEWEWPADPRFLMCTPLSHAGGAF--FLPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRD  279 (524)
T ss_pred             hhcCCCcCcEEEEecCchhhhhHH--HHHHHHcCCEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCccCCC
Confidence            456788899999999999998874  567899999999999999999999999999999999999999999887666677


Q ss_pred             CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCC----CCCCCCCccccCCCceEEEEeCCCC
Q 028779           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA----GSRNIGSAGALAPGVEALIVSVDTQ  161 (204)
Q Consensus        86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~----~~~~~~~~G~p~~~~~v~v~d~~~~  161 (204)
                      ++++|.+++||++++++..+++.+.+ +..+++.||+||++..+.......    ......++|+|+|+++++++| +++
T Consensus       280 l~~lr~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~-~~~  357 (524)
T PRK06188        280 LSSLETVYYGASPMSPVRLAEAIERF-GPIFAQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLD-EDG  357 (524)
T ss_pred             CcceeEEEEcCCCCCHHHHHHHHHHh-CchhhheeCccccCCceeecCchhccccccccCCccccccCCcEEEEEc-CCC
Confidence            89999999999999999999999888 577999999999976554432211    123556899999999999999 679


Q ss_pred             CCCCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          162 KPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       162 ~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      ++++.|+.|||+++|+.++.||+++++.+.+.|. +|||+|+
T Consensus       358 ~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TG  398 (524)
T PRK06188        358 REVAQGEVGEICVRGPLVMDGYWNRPEETAEAFR-DGWLHTG  398 (524)
T ss_pred             CCCCCCCeeEEEEECcchhhhhcCChHHhhhhhc-CCceeec
Confidence            9999999999999999999999999999988886 8999997

>PRK09274 peptide synthase; Provisional

Probab=99.97  E-value=1.2e-29  Score=214.44  Aligned_cols=191  Identities=25%  Similarity=0.298  Sum_probs=158.1

Q ss_pred             cccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-------CCCHHHHHHHHHhcCceEEEechHHHHHHHh
Q 028779            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-------KFDLEMFLRAIEKHRVTHIWVVPPLILALAK   77 (204)
Q Consensus         5 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-------~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~   77 (204)
                      ...++++++|+.++++|++|++++        ..|+++++.+       .+++..+++.|+++++|+++++|++++.|++
T Consensus       207 ~~~~~~~~~~~~~~~~pl~~~~~~--------~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~  278 (552)
T PRK09274        207 REDYGIEPGEIDLPTFPLFALFGP--------ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGR  278 (552)
T ss_pred             HHHhCCCCCceeeeccCHHHhhhh--------hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHH
Confidence            345678899999999999886543        3477877754       3689999999999999999999999999988


Q ss_pred             CCCCCCCCCccceeeeecCCCCCHHHHHHHHHhCC-CCcEEcccccccccccccccCCC------C--CCCCCCCccccC
Q 028779           78 HGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVP-SATVIQGYGLTETSGIATMENSF------A--GSRNIGSAGALA  148 (204)
Q Consensus        78 ~~~~~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~------~--~~~~~~~~G~p~  148 (204)
                      .......++++||.++++|+++++++.+++++.|+ ++++++.||+||++.++......      .  ......++|+|+
T Consensus       279 ~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~  358 (552)
T PRK09274        279 YGEANGIKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREILFATRAATDNGAGICVGRPV  358 (552)
T ss_pred             HhhhcCCCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeEeecchhhhccccccccCCCCcccCccC
Confidence            76555668899999999999999999999999996 48999999999998765543211      0  011234789999


Q ss_pred             CCceEEEEeCC--------CCCCCCCCCcceEEEecCCcchhhcCCccccccccc--hhh--hcccc
Q 028779          149 PGVEALIVSVD--------TQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWG--FRK--IMHSF  203 (204)
Q Consensus       149 ~~~~v~v~d~~--------~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~--~~g--w~~~~  203 (204)
                      |+++++|+|++        ++++++.|+.|||+++|++++.|||++++.|.+.|.  .+|  ||+||
T Consensus       359 ~~~~~~ivd~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~~~g~~w~~TG  425 (552)
T PRK09274        359 DGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMG  425 (552)
T ss_pred             CCceEEEEeccccccccccccccCCCCCeeEEEEecCcccccccCChHHhhhhhcccCCCCcEEEcC
Confidence            99999999953        567899999999999999999999999999987763  356  99997

>PLN03051 acyl-activating enzyme; Provisional

Probab=99.97  E-value=2.6e-29  Score=210.25  Aligned_cols=191  Identities=16%  Similarity=0.125  Sum_probs=155.4

Q ss_pred             cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC-CCHHHHHHHHHhcCceEEEechHHHHHHHhCCC--CCC
Q 028779            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--VKK   83 (204)
Q Consensus         7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~~~   83 (204)
                      .++++++|++++.+|++|.+++.. ++.+|..|+++++.+. +++..+++.|+++++|++.++|+++..|++...  ...
T Consensus       154 ~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~~  232 (499)
T PLN03051        154 HMDIQPGDVVCWPTNLGWMMGPWL-LYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEG  232 (499)
T ss_pred             hcCCCCCCEEEEccCcceeeehHH-HHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCcccccc
Confidence            457888999999999999999765 8889999999999874 789999999999999999999999999987643  334


Q ss_pred             CCCccceeeeecCCCCCHHHHHHHHHhCC-CCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCC
Q 028779           84 FDLSSLKLVGSGAAPLGKELMEECAKNVP-SATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQK  162 (204)
Q Consensus        84 ~~l~~lr~~~~~G~~l~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~  162 (204)
                      .++++||.++++|+++++++.+++++.++ ++.+++.||+||++.......... ....+++|+|.++++++|+| ++++
T Consensus       233 ~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~ivd-~~g~  310 (499)
T PLN03051        233 LDWSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLLQ-PQAPGAFSTASLGTRFVLLN-DNGV  310 (499)
T ss_pred             CCchhheEEEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeecccccC-CCCCccccCCCCCceEEEEC-CCCC
Confidence            57789999999999999999988877432 478999999999865433222111 23457899999999999999 8899


Q ss_pred             CCCCC--CcceEEEecCCc--chhhcCCccccccccchhh----------hcccc
Q 028779          163 PLPPN--QLGEIWLRGPNM--MRGIMLIASIILSSWGFRK----------IMHSF  203 (204)
Q Consensus       163 ~~~~g--~~Gel~v~g~~~--~~gY~~~~~~t~~~~~~~g----------w~~~~  203 (204)
                      +++.|  +.|||+++||.+  +.|||+++ .++ .+. +|          |||||
T Consensus       311 ~~~~g~~~~Gel~v~g~~~~~~~gy~~~~-~~~-~~~-~g~~~~~~~~~~~~~TG  362 (499)
T PLN03051        311 PYPDDQPCVGEVALAPPMLGASDRLLNAD-HDK-VYY-KGMPMYGSKGMPLRRHG  362 (499)
T ss_pred             CCCCCCCcceEEEEecCcCCCCccccCCc-ccc-eee-ecCCccccCCcceeecC
Confidence            99988  589999999976  57999865 333 332 34          68997

>PRK06164 acyl-CoA synthetase; Validated

Probab=99.97  E-value=2.9e-29  Score=211.62  Aligned_cols=194  Identities=23%  Similarity=0.317  Sum_probs=165.0

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCC
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~   85 (204)
                      ..++++++|++++.+|++|.+++.. ++.++..|+++++.+.+++..+++.|+++++|+++++|+++..|++.. ....+
T Consensus       215 ~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~-~~~~~  292 (540)
T PRK06164        215 RAYGYDPGAVLLAALPFCGVFGFST-LLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTA-GERAD  292 (540)
T ss_pred             HhcCCCCCCEEEEcCCchhHHHHHH-HHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhh-cccCC
Confidence            4567889999999999999999976 889999999999999999999999999999999999999999998872 34567


Q ss_pred             CccceeeeecC-CCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCC-CCCCCCccccC-CCceEEEEeCCCCC
Q 028779           86 LSSLKLVGSGA-APLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG-SRNIGSAGALA-PGVEALIVSVDTQK  162 (204)
Q Consensus        86 l~~lr~~~~~G-~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~-~~~~~~~G~p~-~~~~v~v~d~~~~~  162 (204)
                      ++++|.+..+| .+.+.++.+++.+.  ++++++.||+||++.+......... .....+.|.|+ ++++++++|+++++
T Consensus       293 ~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~  370 (540)
T PRK06164        293 FPSARLFGFASFAPALGELAALARAR--GVPLTGLYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGA  370 (540)
T ss_pred             CcceeeeeeccCCcchHHHHHHHhhc--CCceecceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCCCCc
Confidence            88999887765 55666777776665  7899999999999877655432221 22334668875 89999999989999


Q ss_pred             CCCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          163 PLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       163 ~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      ++++|+.|||+++|++++.|||++++.|++.|..+|||+||
T Consensus       371 ~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TG  411 (540)
T PRK06164        371 LLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTG  411 (540)
T ss_pred             CCCCCCeeEEEEecccccccccCCchhhhhcccCCCceecC
Confidence            99999999999999999999999999999999889999997

>PRK12467 peptide synthase; Provisional

Probab=99.97  E-value=1.6e-29  Score=247.54  Aligned_cols=195  Identities=17%  Similarity=0.240  Sum_probs=171.3

Q ss_pred             cccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC--CCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCC
Q 028779            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK   82 (204)
Q Consensus         5 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~--~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~   82 (204)
                      ...++++++|+++...|++|+.+... ++.+|..|+++++.+.  +++..+++.|+++++|+++++|++++.|++..  .
T Consensus      3270 ~~~~~~~~~d~~l~~~~~~fd~~~~~-~~~~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~--~ 3346 (3956)
T PRK12467       3270 AEAYELDANDRVLLFMSFSFDGAQER-FLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDA--G 3346 (3956)
T ss_pred             HHhcCCCcCCEEEEecCccHhHHHHH-HHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhcc--c
Confidence            45678899999999999999988776 8999999999999875  68999999999999999999999999998754  2


Q ss_pred             CCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCC---CCCCCCccccCCCceEEEEeCC
Q 028779           83 KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG---SRNIGSAGALAPGVEALIVSVD  159 (204)
Q Consensus        83 ~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~---~~~~~~~G~p~~~~~v~v~d~~  159 (204)
                      ..++++||.+++|||++++++.++|.+.++++.+++.||+||++..++.......   .....++|+|+++++++|+| +
T Consensus      3347 ~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~ 3425 (3956)
T PRK12467       3347 GADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVLD-G 3425 (3956)
T ss_pred             ccCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEecccccccCCCCCCCccccCCCEEEEEC-C
Confidence            4467899999999999999999999999988999999999999876654332111   12346899999999999999 8


Q ss_pred             CCCCCCCCCcceEEEecCCcchhhcCCccccccccchhh-------hcccc
Q 028779          160 TQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRK-------IMHSF  203 (204)
Q Consensus       160 ~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g-------w~~~~  203 (204)
                      ++++++.|+.|||+|+|+++++|||++++.|+++|..++       |||||
T Consensus      3426 ~~~~vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTG 3476 (3956)
T PRK12467       3426 QLNPVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTG 3476 (3956)
T ss_pred             CCCCCCCCCCceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeeccc
Confidence            899999999999999999999999999999999997554       59997

>PRK13382 acyl-CoA synthetase; Provisional

Probab=99.97  E-value=5e-29  Score=210.28  Aligned_cols=189  Identities=21%  Similarity=0.295  Sum_probs=161.7

Q ss_pred             cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCC--CCCC
Q 028779            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--VKKF   84 (204)
Q Consensus         7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~~~~   84 (204)
                      .+..+.+|+++..+|++|.+++.. ++.++..|+++++.+.+++..+++.|+++++|++.++|++++.|++...  ....
T Consensus       231 ~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~  309 (537)
T PRK13382        231 RTPWRAEEPTVIVAPMFHAWGFSQ-LVLAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRY  309 (537)
T ss_pred             hhCCCCCCeEEEecChHhhhHHHH-HHHHHhcCcEEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcccC
Confidence            456678999999999999999866 7888999999999988999999999999999999999999999987542  2234


Q ss_pred             CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 028779           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL  164 (204)
Q Consensus        85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~  164 (204)
                      +++++|.++++|++++++++++|.+.+ +..+++.||+||++.+++..... .....+++|+|+++++++++| ++++++
T Consensus       310 ~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~-~~~~~~~vG~p~~~~~~~i~d-~~~~~~  386 (537)
T PRK13382        310 SGRSLRFAAASGSRMRPDVVIAFMDQF-GDVIYNNYNATEAGMIATATPAD-LRAAPDTAGRPAEGTEIRILD-QDFREV  386 (537)
T ss_pred             CccceeEEEEcCCCCCHHHHHHHHHHc-CCcEEecccccccCcceecChhH-hccCCCCccccCcCcEEEEEC-CCCCCC
Confidence            567899999999999999999999999 56799999999998766543322 234567899999999999999 788999


Q ss_pred             CCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          165 PPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       165 ~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      +.|+.|||+++|++++.||+  ++.++. +. +|||+||
T Consensus       387 ~~g~~GEl~v~g~~~~~gY~--~~~~~~-~~-~g~~~TG  421 (537)
T PRK13382        387 PTGEVGTIFVRNDTQFDGYT--SGSTKD-FH-DGFMASG  421 (537)
T ss_pred             CCCCeeEEEEEcCCcccCcc--ccchhh-cc-CCCEeeC
Confidence            99999999999999999998  445543 44 7999997

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=7.7e-30  Score=218.93  Aligned_cols=197  Identities=21%  Similarity=0.274  Sum_probs=160.6

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC--C--CHHHHHHHHHhcCc---eEEEechHHHHHHHhC
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--F--DLEMFLRAIEKHRV---THIWVVPPLILALAKH   78 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~--~--~~~~~~~~i~~~~~---t~~~~~p~~~~~l~~~   78 (204)
                      ..+++.++|++++++|++|++++.. ++.+++.|+++++.++  +  ++..+++.++++++   +.+..+|+++..+++.
T Consensus       214 ~~~~~~~~d~~l~~~Pl~h~~gl~~-~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~  292 (631)
T PRK07769        214 DALEGQEGDRGVSWLPFFHDMGLIT-VLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAA  292 (631)
T ss_pred             HHcCCCCcceEEEeCCCcCchhhHH-HHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHh
Confidence            4567788999999999999999987 5556778999888753  4  89999999999886   7899999998777653


Q ss_pred             ---CC--CCCCCCccceeeeecCCCCCHHHHHHHHHhCC-----CCcEEcccccccccccccccCCCCC-----------
Q 028779           79 ---GL--VKKFDLSSLKLVGSGAAPLGKELMEECAKNVP-----SATVIQGYGLTETSGIATMENSFAG-----------  137 (204)
Q Consensus        79 ---~~--~~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~-----~~~~~~~yG~tE~~~~~~~~~~~~~-----------  137 (204)
                         +.  ....++++||.+++||+++++++.+++.+.|+     ...+++.||+||++..++.......           
T Consensus       293 ~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~  372 (631)
T PRK07769        293 RGLPKDGEPPLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDEL  372 (631)
T ss_pred             hccchhcccCcchhheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHH
Confidence               11  12457889999999999999999999999873     3469999999998765554321110           


Q ss_pred             --------------CCCCCCccccCCCceEEEEeCCCCCCCCCCCcceEEEecCCcchhhcCCccccccccch-------
Q 028779          138 --------------SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGF-------  196 (204)
Q Consensus       138 --------------~~~~~~~G~p~~~~~v~v~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~-------  196 (204)
                                    .....++|+|.++++++|+|++++++++.|+.|||+++||+++.|||++++.|++.|..       
T Consensus       373 ~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g~~~~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~  452 (631)
T PRK07769        373 NAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETASELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLS  452 (631)
T ss_pred             hCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCCCCcCCCCCCEEEEEecCCCccccccCChhHHHHHHhhhcccccc
Confidence                          01124789999999999999888999999999999999999999999999999988852       


Q ss_pred             ----------hhhcccc
Q 028779          197 ----------RKIMHSF  203 (204)
Q Consensus       197 ----------~gw~~~~  203 (204)
                                +||||||
T Consensus       453 ~~~~~~~~~~~gw~~TG  469 (631)
T PRK07769        453 ESHAEGAPDDALWVRTG  469 (631)
T ss_pred             cccccCcccCCCeeecc
Confidence                      4899997

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.96  E-value=7.6e-29  Score=210.14  Aligned_cols=189  Identities=34%  Similarity=0.565  Sum_probs=166.4

Q ss_pred             CCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCCcccee
Q 028779           12 LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL   91 (204)
Q Consensus        12 ~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~   91 (204)
                      .++++++++|++|.+++...++.++..|+++++.+.+++..+++.|+++++|++.++|+++..+++.......+++++|.
T Consensus       248 ~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~  327 (563)
T PRK06710        248 GEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRA  327 (563)
T ss_pred             CCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccccCChhhhhh
Confidence            35688999999999998876778899999999998899999999999999999999999999998866555566789999


Q ss_pred             eeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCCCcce
Q 028779           92 VGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGE  171 (204)
Q Consensus        92 ~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~~g~~Ge  171 (204)
                      ++++|+++++++.+++++.+ +.++++.||+||++.++....... ....+++|+|++++.++++|+++++++++|+.||
T Consensus       328 v~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~~Ge  405 (563)
T PRK06710        328 CISGSAPLPVEVQEKFETVT-GGKLVEGYGLTESSPVTHSNFLWE-KRVPGSIGVPWPDTEAMIMSLETGEALPPGEIGE  405 (563)
T ss_pred             eeeCCCcCCHHHHHHHHHhh-CCCEecccccccCccccccCcccc-cccCCccCCCCCCCeEEEEECCCCccCCCCCceE
Confidence            99999999999999999988 788999999999987654332111 2345689999999999999988899999999999


Q ss_pred             EEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          172 IWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       172 l~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      |+++|+.++.||+++++.+.+.|. +|||+||
T Consensus       406 l~v~g~~~~~gY~~~~~~~~~~~~-~g~~~TG  436 (563)
T PRK06710        406 IVVKGPQIMKGYWNKPEETAAVLQ-DGWLHTG  436 (563)
T ss_pred             EEEecCccchhhhCChHHHhhhcc-cCccccc
Confidence            999999999999999999988887 8999997

>PRK05852 acyl-CoA synthetase; Validated

Probab=99.96  E-value=6.3e-29  Score=209.43  Aligned_cols=195  Identities=24%  Similarity=0.371  Sum_probs=165.6

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC--CCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCC-
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK-   82 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~-   82 (204)
                      ..++++.+|++++.+|++|.+++...++.++..|+++++.+  .+++..+++.++++++|.++++|+++..|++..... 
T Consensus       210 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  289 (534)
T PRK05852        210 TGYRLSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEP  289 (534)
T ss_pred             HHhCCCCcceEEEecCcchhHHHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhccccc
Confidence            45678899999999999999999888889999999998864  478999999999999999999999999998765322 


Q ss_pred             -CCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCC---CCCCCCCcccc--CCCceEEEE
Q 028779           83 -KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA---GSRNIGSAGAL--APGVEALIV  156 (204)
Q Consensus        83 -~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~---~~~~~~~~G~p--~~~~~v~v~  156 (204)
                       ..+++++|.++.+|+++++.+++++.+.| ++++++.||+||++..........   ......++|.+  .++++++++
T Consensus       290 ~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~g~~~~i~  368 (534)
T PRK05852        290 SGRKPAALRFIRSCSAPLTAETAQALQTEF-AAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGRSTGAQIRIV  368 (534)
T ss_pred             ccccCCCeeEEEECCCCCCHHHHHHHHHHh-CCChhhccCccccchhhhcCCccccccccCcccccccCCCCCCCeEEEE
Confidence             34567999999999999999999999998 789999999999987665432211   01112234444  799999999


Q ss_pred             eCCCCCCCCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          157 SVDTQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       157 d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      | ++++++++|+.|||+++|+.+++|||++++.+.+.|. +|||||+
T Consensus       369 d-~~g~~~~~g~~Gel~v~g~~v~~gY~~~~~~t~~~~~-~g~~~TG  413 (534)
T PRK05852        369 G-SDGLPLPAGAVGEVWLRGTTVVRGYLGDPTITAANFT-DGWLRTG  413 (534)
T ss_pred             C-CCCCCCCCCCceEEEEecCcccchhcCCcccchhhhc-CCCcccC
Confidence            9 7789999999999999999999999999999999887 8999997

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=99.96  E-value=7.2e-29  Score=207.85  Aligned_cols=193  Identities=19%  Similarity=0.235  Sum_probs=169.2

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC-CCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCC
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~   84 (204)
                      ..++++++|++++.+|++|..++...++.++..|+++++.+. +++..+++.|+++++|.+.++|+++..+++.......
T Consensus       196 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~~~  275 (508)
T TIGR02262       196 NTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAE  275 (508)
T ss_pred             HhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCcccccc
Confidence            446788999999999999999997767888999999998764 6899999999999999999999999988776544445


Q ss_pred             CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 028779           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL  164 (204)
Q Consensus        85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~  164 (204)
                      ...++|.++++|+++++++.+.|.+.| ++++++.||+||++.+.......  ....+++|+|+++++++++| ++++++
T Consensus       276 ~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~--~~~~~~~G~~~~g~~v~i~d-~~~~~~  351 (508)
T TIGR02262       276 DQVRLRLCTSAGEALPAEVGQRWQARF-GVDIVDGIGSTEMLHIFLSNLPG--DVRYGTSGKPVPGYRLRLVG-DGGQDV  351 (508)
T ss_pred             ccccceeEEEcCCCCCHHHHHHHHHHh-CCchhhCccccccCceeecCCcc--CCCCCCcCCCCCCcEEEEEC-CCCCCC
Confidence            567999999999999999999999998 68999999999998765543222  23456899999999999999 999999


Q ss_pred             CCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          165 PPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       165 ~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      ++|+.|||+++|++++.||+++++.+++.|. +|||+|+
T Consensus       352 ~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~~-~~~~~TG  389 (508)
T TIGR02262       352 AAGEPGELLISGPSSATMYWNNRAKTRDTFQ-GEWTRSG  389 (508)
T ss_pred             CCCCeeEEEEecCccccccCCCHHHhHhhhh-cCceecc
Confidence            9999999999999999999999999988887 7999997

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK12316 peptide synthase; Provisional

Probab=99.96  E-value=2.8e-29  Score=249.01  Aligned_cols=195  Identities=17%  Similarity=0.208  Sum_probs=171.0

Q ss_pred             cccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC---CCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCC
Q 028779            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA---KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV   81 (204)
Q Consensus         5 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~---~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~   81 (204)
                      ...++++++|++++.+|++|+.++.. ++.+|+.|+++++.+   .+++..+++.++++++|++.++|++++.|++... 
T Consensus       688 ~~~~~~~~~d~~l~~~p~~fd~~~~~-~~~~L~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~-  765 (5163)
T PRK12316        688 QQAYGLGVGDTVLQKTPFSFDVSVWE-FFWPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDED-  765 (5163)
T ss_pred             HHhcCCCCCCEEEeeCCeehHHHHHH-HHHHHhCCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhccc-
Confidence            45678899999999999999999887 889999999999985   3799999999999999999999999999987543 


Q ss_pred             CCCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCC
Q 028779           82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQ  161 (204)
Q Consensus        82 ~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~  161 (204)
                       ..+++++|.+++|||++++++.+++.+.+++++++|.||+||++..++............++|+|+++++++|+| +++
T Consensus       766 -~~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~  843 (5163)
T PRK12316        766 -VASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGRPIANLACYILD-ANL  843 (5163)
T ss_pred             -cccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEecccccCCCCCCccccCCCEEEEEC-CCC
Confidence             345789999999999999999999999988999999999999986544332222234566899999999999999 789


Q ss_pred             CCCCCCCcceEEEecCCcchhhcCCccccccccch------hhhcccc
Q 028779          162 KPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGF------RKIMHSF  203 (204)
Q Consensus       162 ~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~------~gw~~~~  203 (204)
                      ++++.|+.|||+|+|+++++||+++++.|+++|..      ++|||||
T Consensus       844 ~~~p~G~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TG  891 (5163)
T PRK12316        844 EPVPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTG  891 (5163)
T ss_pred             CCCCCCCceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeEecC
Confidence            99999999999999999999999999999998852      4699998

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=99.96  E-value=8.8e-29  Score=207.35  Aligned_cols=194  Identities=22%  Similarity=0.266  Sum_probs=168.1

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCC
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~   85 (204)
                      ..+.++++|++++.+|++|.+++.. ++.++..|+++++.+.+++..+++.++++++|++.++|+++..|.+... ...+
T Consensus       195 ~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-~~~~  272 (515)
T TIGR03098       195 TYLENRPDDRLLAVLPLSFDYGFNQ-LTTAFYVGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDW-PESA  272 (515)
T ss_pred             HHhCCCcccEEEEECchhhHhHHHH-HHHHHHcCCEEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhccc-CCCC
Confidence            4467888999999999999999876 8899999999999988999999999999999999999999999987532 2346


Q ss_pred             CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCC
Q 028779           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  165 (204)
Q Consensus        86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~  165 (204)
                      ++++|.++++|+++++.+.+++++.++++.+++.||+||++....... .......+++|+|+++++++++| +++++++
T Consensus       273 ~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~-~~~~~~~~~vG~~~~~~~~~i~~-~~~~~~~  350 (515)
T TIGR03098       273 APSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPP-EEVDRRPDSIGKAIPNAEVLVLR-EDGSECA  350 (515)
T ss_pred             ccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEeccc-ccccCCCCCcceecCCCEEEEEC-CCCCCCC
Confidence            789999999999999999999999998899999999999876554322 22234567899999999999999 7899999


Q ss_pred             CCCcceEEEecCCcchhhcCCccccccccch-----------hhhcccc
Q 028779          166 PNQLGEIWLRGPNMMRGIMLIASIILSSWGF-----------RKIMHSF  203 (204)
Q Consensus       166 ~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~-----------~gw~~~~  203 (204)
                      .|+.|||+++|+.++.|||++++.+.+.|..           ++||+|+
T Consensus       351 ~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TG  399 (515)
T TIGR03098       351 PGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSG  399 (515)
T ss_pred             CCCceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceecc
Confidence            9999999999999999999999988776642           2478886

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.96  E-value=1.1e-28  Score=206.69  Aligned_cols=194  Identities=33%  Similarity=0.448  Sum_probs=173.0

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCC
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~   85 (204)
                      ..++++++|++++.+|++|.+++.. .+.++..|+++++.+.+++..+++.++++++|.++++|++++.|++.......+
T Consensus       201 ~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~  279 (521)
T PRK06187        201 AWLKLSRDDVYLVIVPMFHVHAWGL-PYLALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVD  279 (521)
T ss_pred             HhhCCCCCCEEEEeCCchHHhhHHH-HHHHHHhCCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCccC
Confidence            4567889999999999999999987 455999999999998889999999999999999999999999999887766678


Q ss_pred             CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCC----CCCCCCccccCCCceEEEEeCCCC
Q 028779           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG----SRNIGSAGALAPGVEALIVSVDTQ  161 (204)
Q Consensus        86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~----~~~~~~~G~p~~~~~v~v~d~~~~  161 (204)
                      ++++|.++.+|++++.++.+++.+.| ++++++.||+||++.+.........    .....++|+|+++++++|+| +++
T Consensus       280 ~~~l~~v~~~Ge~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~  357 (521)
T PRK06187        280 FSSLRLVIYGGAALPPALLREFKEKF-GIDLVQGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVD-DDG  357 (521)
T ss_pred             cchhhEEEEcCcCCCHHHHHHHHHHh-CcchheeeccCccCcccccCCcccccccccccCCccccccCCeEEEEEC-CCC
Confidence            89999999999999999999999999 8999999999999877665433221    12567899999999999999 678


Q ss_pred             CCCCC--CCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          162 KPLPP--NQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       162 ~~~~~--g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      ++++.  |+.|||+++|++++.||+++++.+.+.|. +|||+|+
T Consensus       358 ~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~-~~~~~tG  400 (521)
T PRK06187        358 DELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETID-GGWLHTG  400 (521)
T ss_pred             CCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHhh-CCceecc
Confidence            88988  99999999999999999999999988887 7899997

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=99.96  E-value=8.7e-29  Score=206.87  Aligned_cols=196  Identities=15%  Similarity=0.158  Sum_probs=167.9

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC---CCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCC
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK   82 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~   82 (204)
                      ..++...+|+++.++|++|.+++.. ++.++..|+++++.++   .++..+++.+.+++++.+..+|+++..++......
T Consensus       175 ~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~  253 (502)
T TIGR01734       175 ADFPLSEGKQFLNQAPFSFDLSVMD-LYPCLASGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFN  253 (502)
T ss_pred             HhCCCCCCceEEeecCceechhHHH-HHHHHHCCCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhccccc
Confidence            3467888999999999999998876 8899999999999875   48899999999999999999999998887765545


Q ss_pred             CCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCC---CCCCCCCccccCCCceEEEEeCC
Q 028779           83 KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA---GSRNIGSAGALAPGVEALIVSVD  159 (204)
Q Consensus        83 ~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~---~~~~~~~~G~p~~~~~v~v~d~~  159 (204)
                      ...++++|.++++|++++.++.+++.+.++++++++.||+||++..........   ......++|.|.++++++|+| +
T Consensus       254 ~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~-~  332 (502)
T TIGR01734       254 QENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMD-E  332 (502)
T ss_pred             cccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEccccccccCCccccccccCCCEEEEEC-C
Confidence            567889999999999999999999999999999999999999876444321111   123345799999999999999 7


Q ss_pred             CCCCCCCCCcceEEEecCCcchhhcCCccccccccc---hhhhcccc
Q 028779          160 TQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWG---FRKIMHSF  203 (204)
Q Consensus       160 ~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~---~~gw~~~~  203 (204)
                      +++++++|+.|||+++|+.++.||+++++.+.+.|.   .++|||||
T Consensus       333 ~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TG  379 (502)
T TIGR01734       333 EGEPLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTG  379 (502)
T ss_pred             CCCCCCCCCeeEEEEccccccccccCCcccchHhheeCCCcEEEECC
Confidence            789999999999999999999999999999888763   34699997

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK13390 acyl-CoA synthetase; Provisional

Probab=99.96  E-value=1.3e-28  Score=206.07  Aligned_cols=193  Identities=19%  Similarity=0.235  Sum_probs=164.2

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCC--CC
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KK   83 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~--~~   83 (204)
                      ..+.+..+|++++.+|++|++++.. .+..+..|+++++.+.+++..+++.|+++++|++.++|+++..+++....  ..
T Consensus       188 ~~~~~~~~~~~~~~~p~~h~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~  266 (501)
T PRK13390        188 AFYDISESDIYYSSAPIYHAAPLRW-CSMVHALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTR  266 (501)
T ss_pred             HHhCCCCCCeEEecccchhhhHHHH-HHHHHhcCceEEEcCCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhccc
Confidence            3567888999999999999998865 34456789999999889999999999999999999999999998865421  33


Q ss_pred             CCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCC
Q 028779           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP  163 (204)
Q Consensus        84 ~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~  163 (204)
                      .+++++|.++.+|+++++++.+.+++.+ +..+++.||+||++.++..... ......+++|+|+++ +++++| +++++
T Consensus       267 ~~~~~l~~v~~~g~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~-~~~~~~~~~G~~~~g-~~~i~d-~~~~~  342 (501)
T PRK13390        267 YDVSSLRAVIHAAAPCPVDVKHAMIDWL-GPIVYEYYSSTEAHGMTFIDSP-DWLAHPGSVGRSVLG-DLHICD-DDGNE  342 (501)
T ss_pred             CChhhhheEEEcCCCCCHHHHHHHHHhc-CCceeeeecccccCceEEecch-hhccCCCCcCCcccc-eEEEEC-CCCCC
Confidence            4577999999999999999999999988 6789999999999876543221 112445789999999 799999 88999


Q ss_pred             CCCCCcceEEEecCCcchhhcCCccccccccch--hhhcccc
Q 028779          164 LPPNQLGEIWLRGPNMMRGIMLIASIILSSWGF--RKIMHSF  203 (204)
Q Consensus       164 ~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~--~gw~~~~  203 (204)
                      +++|+.|||+++|+.++.|||++++.+++.+..  +||+|||
T Consensus       343 ~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tG  384 (501)
T PRK13390        343 LPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVG  384 (501)
T ss_pred             CCCCCceEEEEecCCccccccCChhhhHHhhccCCCceEEcC
Confidence            999999999999999999999999999888753  6899987

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=99.96  E-value=1.4e-28  Score=211.00  Aligned_cols=196  Identities=23%  Similarity=0.324  Sum_probs=164.3

Q ss_pred             cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC----CCCHHHHHHHHHhcCceEEEechHHHHHHHhCCC--
Q 028779            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA----KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--   80 (204)
Q Consensus         7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~----~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--   80 (204)
                      .++++++|++++..|++|+.+....++.+|..|+++++.+    ..++..+++.++++++|+++++|++++.|.+...  
T Consensus       269 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~  348 (629)
T PRK10524        269 IFGGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPAL  348 (629)
T ss_pred             hcCCCCCCEEEEcCCCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCccc
Confidence            4678899999999999999888776889999999999875    3579999999999999999999999999887543  


Q ss_pred             CCCCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCC--CCCCCCCCCccccCCCceEEEEeC
Q 028779           81 VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS--FAGSRNIGSAGALAPGVEALIVSV  158 (204)
Q Consensus        81 ~~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~--~~~~~~~~~~G~p~~~~~v~v~d~  158 (204)
                      ....++++||.++++|+++++++.+++.+.+ ++++++.||+||++........  .......+++|+|+++++++|+|+
T Consensus       349 ~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~  427 (629)
T PRK10524        349 LRKHDLSSLRALFLAGEPLDEPTASWISEAL-GVPVIDNYWQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNVKLLNE  427 (629)
T ss_pred             ccccChhheeEEEEeCCCCCHHHHHHHHHhc-CCCeEeccccccccchhhcCCCCcccCcCCCCCcccCcCCceEEEEeC
Confidence            2345678999999999999999999999988 6889999999999853322211  111234678999999999999995


Q ss_pred             CCCCCCCCCCcceEEEecC---CcchhhcCCccccccccc---hhhhcccc
Q 028779          159 DTQKPLPPNQLGEIWLRGP---NMMRGIMLIASIILSSWG---FRKIMHSF  203 (204)
Q Consensus       159 ~~~~~~~~g~~Gel~v~g~---~~~~gY~~~~~~t~~~~~---~~gw~~~~  203 (204)
                      ++|++++.|+.|||+++||   +++.|||++++.+.+.+.   .+|||+||
T Consensus       428 ~~g~~~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TG  478 (629)
T PRK10524        428 VTGEPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTF  478 (629)
T ss_pred             CCCCCCCCCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcEEEcC
Confidence            4899999999999999998   578999999987766542   36899997

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=99.96  E-value=1e-28  Score=227.49  Aligned_cols=187  Identities=14%  Similarity=0.092  Sum_probs=159.8

Q ss_pred             cccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC---CCHHHHHHHHHhcCceEEEechHHHHHHHhCCCC
Q 028779            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV   81 (204)
Q Consensus         5 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~   81 (204)
                      ...+++.++|+++...|++|+.++.. ++.+|+.|+++++.+.   .++..+++.|+++++|+++++|++++.|....  
T Consensus       448 ~~~~~~~~~d~~~~~~~~~~d~~~~~-i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~--  524 (1389)
T TIGR03443       448 AKRFGLSENDKFTMLSGIAHDPIQRD-MFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQA--  524 (1389)
T ss_pred             HHhcCCCCCCEEEEecCceecchHHH-HHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcc--
Confidence            34577889999999999999988877 8899999999999864   37889999999999999999999999987543  


Q ss_pred             CCCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCC---------CCCCCCccccCCCce
Q 028779           82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG---------SRNIGSAGALAPGVE  152 (204)
Q Consensus        82 ~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~---------~~~~~~~G~p~~~~~  152 (204)
                       ...++++|.++++|+++++...+++.+.++++++++.||+||++..++.......         .....++|+|+++++
T Consensus       525 -~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~  603 (1389)
T TIGR03443       525 -TTPIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQ  603 (1389)
T ss_pred             -cccCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEEEEEccccccccchhhcccCcCcCCCccCCCE
Confidence             3457899999999999999999999999889999999999999876554321110         123467999999999


Q ss_pred             EEEEeCCC-CCCCCCCCcceEEEecCCcchhhcCCccccccccc
Q 028779          153 ALIVSVDT-QKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWG  195 (204)
Q Consensus       153 v~v~d~~~-~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~  195 (204)
                      ++|+|+++ +++++.|+.|||+|+||++++|||++|+.|+++|.
T Consensus       604 ~~ivd~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~  647 (1389)
T TIGR03443       604 LLVVNRNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKFV  647 (1389)
T ss_pred             EEEECCccCCCcCCCCCceEEEecccccchhcCCChhHhhhhcc
Confidence            99999543 57899999999999999999999999999999884

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=99.96  E-value=5e-29  Score=209.72  Aligned_cols=193  Identities=24%  Similarity=0.269  Sum_probs=151.6

Q ss_pred             cccccCC-CCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC--C--CHHHHHHHHHhcCceEEEechHHHHHHHhCC
Q 028779            5 DQETAGE-LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--F--DLEMFLRAIEKHRVTHIWVVPPLILALAKHG   79 (204)
Q Consensus         5 ~~~~~~~-~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~--~--~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~   79 (204)
                      ...+++. ++|++++++|++|++++.. ++.+++.|+++++.+.  +  ++..+++.++++++|++..+|.++..+.+..
T Consensus       185 ~~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~  263 (525)
T PRK05851        185 NARVGLDAATDVGCSWLPLYHDMGLAF-LLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYA  263 (525)
T ss_pred             HHHhCCCCCCCeEEEcCCCccCccHHH-HHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhh
Confidence            3456777 8999999999999999976 7889999999999863  4  6889999999999998755444444443322


Q ss_pred             -CCCCCCCccceeeeecCCCCCHHHHHHHHHh---C--CCCcEEcccccccccccccccCCCC-------------CCCC
Q 028779           80 -LVKKFDLSSLKLVGSGAAPLGKELMEECAKN---V--PSATVIQGYGLTETSGIATMENSFA-------------GSRN  140 (204)
Q Consensus        80 -~~~~~~l~~lr~~~~~G~~l~~~~~~~~~~~---~--~~~~~~~~yG~tE~~~~~~~~~~~~-------------~~~~  140 (204)
                       .....++++||.++++|+++++++.+++.+.   +  +...+++.||+||++..++......             ....
T Consensus       264 ~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (525)
T PRK05851        264 RRVSDVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARR  343 (525)
T ss_pred             ccccCCCHHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhceEEEecCCCCCceeeeeccccCcccce
Confidence             1234557899999999999999999999875   2  2346999999999976655432110             1123


Q ss_pred             CCCccccCCCceEEEEeCCCCCCCCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          141 IGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       141 ~~~~G~p~~~~~v~v~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      ..++|+|+|+++++|+|++.+++++.|+.|||+++|++++.|||++++.+     .+||||||
T Consensus       344 ~~~vG~p~~g~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~GY~~~~~~~-----~~~~~~TG  401 (525)
T PRK05851        344 HAVLGNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMSGYLGQAPID-----PDDWFPTG  401 (525)
T ss_pred             eeeecCCCCCcEEEEECCCCCccCCCCCeEEEEEecCchhhccccCCccC-----CCCceecc
Confidence            46799999999999999555567899999999999999999999998643     36899997

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=99.96  E-value=3.1e-28  Score=206.23  Aligned_cols=188  Identities=27%  Similarity=0.402  Sum_probs=165.3

Q ss_pred             CcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC-CCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCCcccee
Q 028779           13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL   91 (204)
Q Consensus        13 ~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~   91 (204)
                      ++++++.+|++|.+++....+.++..|++.++.+. .++..+++.++++++|.+..+|+++..+++.......+++++|.
T Consensus       252 ~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~  331 (557)
T PRK07059        252 QLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIV  331 (557)
T ss_pred             CcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCcCCchhheE
Confidence            45788899999999987767788888988777654 58999999999999999999999999999876656667889999


Q ss_pred             eeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCCCcce
Q 028779           92 VGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGE  171 (204)
Q Consensus        92 ~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~~g~~Ge  171 (204)
                      ++.||+++++.+.++|.+.+ ++++++.||+||++.++...... ......++|.|+++++++++| ++++++++|+.||
T Consensus       332 ~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~vG~p~~g~~v~i~d-~~~~~~~~g~~Ge  408 (557)
T PRK07059        332 ANGGGMAVQRPVAERWLEMT-GCPITEGYGLSETSPVATCNPVD-ATEFSGTIGLPLPSTEVSIRD-DDGNDLPLGEPGE  408 (557)
T ss_pred             EEeccccCCHHHHHHHHHHh-CCCeeeccccccccchhhcCCCC-CCCcCCcccCccCCcEEEEEC-CCCCCCCCCCceE
Confidence            99999999999999999988 79999999999998876654322 224467899999999999999 8899999999999


Q ss_pred             EEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          172 IWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       172 l~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      |+++|+.++.|||++++.+.+.|..+|||+|+
T Consensus       409 l~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TG  440 (557)
T PRK07059        409 ICIRGPQVMAGYWNRPDETAKVMTADGFFRTG  440 (557)
T ss_pred             EEEeCCccchhhhcCHHHHhhhcccCCceecC
Confidence            99999999999999999999888889999997

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=99.96  E-value=3.5e-28  Score=205.39  Aligned_cols=190  Identities=23%  Similarity=0.375  Sum_probs=167.3

Q ss_pred             cccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCC
Q 028779            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (204)
Q Consensus         5 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~   84 (204)
                      ...++++++|++++.+|++|.+++.. ++.++..|+++++.+++++..+++.|+++++|.++++|+++..|++.+.....
T Consensus       213 ~~~~~~~~~~~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~  291 (542)
T PRK06155        213 AEDLEIGADDVLYTTLPLFHTNALNA-FFQALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARESD  291 (542)
T ss_pred             HHhcCCCCCCEEEEecCHHHHHHHHH-HHHHHHcCceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCcccc
Confidence            34567889999999999999999987 78999999999999999999999999999999999999999999887766666


Q ss_pred             CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 028779           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL  164 (204)
Q Consensus        85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~  164 (204)
                      ..+++|.++.+|  +++.+.+++++.+ +.++++.||+||++.++.....   ....+++|.|.++++++|+| ++++++
T Consensus       292 ~~~~l~~~~~g~--~~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~---~~~~~~vG~~~~~~~~~i~d-~~~~~~  364 (542)
T PRK06155        292 RAHRVRVALGPG--VPAALHAAFRERF-GVDLLDGYGSTETNFVIAVTHG---SQRPGSMGRLAPGFEARVVD-EHDQEL  364 (542)
T ss_pred             ccCceEEEEEcC--CCHHHHHHHHHHc-CCCEEeeecccccCccccCCCC---CCCCCCcCccCCCceEEEEC-CCCCCC
Confidence            677899877655  6789999999988 7899999999999877654321   24567899999999999999 779999


Q ss_pred             CCCCcceEEEecC---CcchhhcCCccccccccchhhhcccc
Q 028779          165 PPNQLGEIWLRGP---NMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       165 ~~g~~Gel~v~g~---~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      +.|+.|||+++|+   +++.||+++++.+++.|. +|||+||
T Consensus       365 ~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~~-~~~~~TG  405 (542)
T PRK06155        365 PDGEPGELLLRADEPFAFATGYFGMPEKTVEAWR-NLWFHTG  405 (542)
T ss_pred             CCCCceEEEEecCCccccchhhcCCHHHHHHhhc-CCcEecc
Confidence            9999999999998   799999999999998887 8999997

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=99.96  E-value=7.7e-29  Score=214.86  Aligned_cols=186  Identities=24%  Similarity=0.275  Sum_probs=148.1

Q ss_pred             CCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHH-------HHHhcCceEEEechHHHHHHHhCCCC-
Q 028779           10 GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLR-------AIEKHRVTHIWVVPPLILALAKHGLV-   81 (204)
Q Consensus        10 ~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~-------~i~~~~~t~~~~~p~~~~~l~~~~~~-   81 (204)
                      ++++|++++.+|++|+++... ....+..|+++.+.   ++..+.+       .++++++|++.++|.+++.+.+.... 
T Consensus       307 ~~~~d~~ls~lPl~H~~~~~~-~~~~l~~G~~v~~~---~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~  382 (700)
T PTZ00216        307 PEEDETYCSYLPLAHIMEFGV-TNIFLARGALIGFG---SPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAK  382 (700)
T ss_pred             CCCCCEEEEEChHHHHHHHHH-HHHHHHcCCEEEEC---CHHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHHHH
Confidence            367899999999999999876 45567888887763   4555554       68899999999999999887542100 


Q ss_pred             ------------------------CCC----------------CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccc
Q 028779           82 ------------------------KKF----------------DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYG  121 (204)
Q Consensus        82 ------------------------~~~----------------~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG  121 (204)
                                              ...                ...++|.+++||+++++++.++++..+ + ++++.||
T Consensus       383 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~-~-~l~~~YG  460 (700)
T PTZ00216        383 LPPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVF-G-MVIQGWG  460 (700)
T ss_pred             HhccCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHh-h-hHhhccC
Confidence                                    000                015799999999999999998888777 5 8999999


Q ss_pred             cccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCC-CCCCCCCcceEEEecCCcchhhcCCccccccccchhhhc
Q 028779          122 LTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQ-KPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIM  200 (204)
Q Consensus       122 ~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~  200 (204)
                      +||+++..+.....  ....+++|+|+|+++++|+|++.. ...+++..|||+++||+++.|||++|+.|++.|+.+|||
T Consensus       461 ~TEt~~~~~~~~~~--~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f~~dGw~  538 (700)
T PTZ00216        461 LTETVCCGGIQRTG--DLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPRGEILLRGPFLFKGYYKQEELTREVLDEDGWF  538 (700)
T ss_pred             cccccccccccCCC--CCCCCCcCCcCCCeEEEEeechhhccCCCCCCCceEEEcCCcccchhcCChhHhhhhccccCCe
Confidence            99998765544332  245689999999999999994432 234567789999999999999999999999999889999


Q ss_pred             ccc
Q 028779          201 HSF  203 (204)
Q Consensus       201 ~~~  203 (204)
                      |||
T Consensus       539 ~TG  541 (700)
T PTZ00216        539 HTG  541 (700)
T ss_pred             ecc
Confidence            998

>PRK06178 acyl-CoA synthetase; Validated

Probab=99.96  E-value=4e-28  Score=205.89  Aligned_cols=195  Identities=26%  Similarity=0.323  Sum_probs=164.8

Q ss_pred             ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCCc
Q 028779            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (204)
Q Consensus         8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~   87 (204)
                      ...+++|++++++|++|++++...++.++..|+++++.+++++..+++.++++++|.+.++|..+..+++.......+++
T Consensus       246 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~~~l~  325 (567)
T PRK06178        246 VVGGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYDLS  325 (567)
T ss_pred             ccCCCCcEEEEecchHHHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCCCCcc
Confidence            55678999999999999999987788899999999999999999999999999999999999999999877655556677


Q ss_pred             cceeeee--cCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCC-----CCCCCCCccccCCCceEEEEeCCC
Q 028779           88 SLKLVGS--GAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA-----GSRNIGSAGALAPGVEALIVSVDT  160 (204)
Q Consensus        88 ~lr~~~~--~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~-----~~~~~~~~G~p~~~~~v~v~d~~~  160 (204)
                      ++|.+..  .++.+++++.+++++.++...+.+.||+||++..........     ......++|+|+|+++++++|+++
T Consensus       326 ~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~  405 (567)
T PRK06178        326 SLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFET  405 (567)
T ss_pred             hheeeeeccccccCCHHHHHHHHHHhCCcccccccccccccccceeccccccCccccccCCcccccccCCcEEEEEcCCC
Confidence            8887644  458999999999999985444445899999876544322111     012446799999999999999888


Q ss_pred             CCCCCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          161 QKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       161 ~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      +++++.|+.|||+++|++++.|||++++.+.+.|. +|||+||
T Consensus       406 ~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~-dg~~~TG  447 (567)
T PRK06178        406 GELLPLGAEGEIVVRTPSLLKGYWNKPEATAEALR-DGWLHTG  447 (567)
T ss_pred             CCcCCCCCceEEEEECCcccccccCChhhhhhccc-CCceeec
Confidence            99999999999999999999999999999988886 7999997

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=99.96  E-value=2.1e-28  Score=210.80  Aligned_cols=190  Identities=27%  Similarity=0.293  Sum_probs=153.1

Q ss_pred             cCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCC-------C-
Q 028779            9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHG-------L-   80 (204)
Q Consensus         9 ~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~-------~-   80 (204)
                      .++++|++++.+|++|+++... .+.++..|+++.+... ++..+++.|+++++|++.++|.+++.+.+..       . 
T Consensus       262 ~~~~~d~~ls~lPl~H~~~~~~-~~~~l~~G~~i~~~~~-~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~  339 (660)
T PLN02430        262 KMTHDDVYLSFLPLAHILDRMI-EEYFFRKGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNP  339 (660)
T ss_pred             CCCCCCEEEEeCcHHHHHHHHH-HHHHHHcCCEEEEeCC-ChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCH
Confidence            4678999999999999999887 4567889999987654 7889999999999999999999998776410       0 


Q ss_pred             -----------------------CCCC---C----------C-ccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccc
Q 028779           81 -----------------------VKKF---D----------L-SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLT  123 (204)
Q Consensus        81 -----------------------~~~~---~----------l-~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~t  123 (204)
                                             ....   +          + .++|.+++||+++++++.+.++ .+++..+++.||+|
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~-~~~~~~i~~~YG~T  418 (660)
T PLN02430        340 RRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLR-VTSCAFVVQGYGLT  418 (660)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHH-HhcCCCeeeecchh
Confidence                                   0000   0          1 5899999999999999876654 44467899999999


Q ss_pred             cccccccccCCCCCCCCCCCccccCCCceEEEEe-CCCC-CCCCCCCcceEEEecCCcchhhcCCccccccccchhhhcc
Q 028779          124 ETSGIATMENSFAGSRNIGSAGALAPGVEALIVS-VDTQ-KPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMH  201 (204)
Q Consensus       124 E~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d-~~~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~  201 (204)
                      |+++..+.....+ ....+++|+|.|+++++++| ++.+ .+++.+..|||+++||+++.|||++++.|+++|. +||||
T Consensus       419 E~~~~~~~~~~~~-~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~~~~e~t~~~~~-dGw~~  496 (660)
T PLN02430        419 ETLGPTTLGFPDE-MCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVMK-DGWFH  496 (660)
T ss_pred             hhhhceEeecccc-CCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCccccccCChHHhhhhhh-cccee
Confidence            9987665543322 23468999999999999987 3433 5666777899999999999999999999999996 89999


Q ss_pred             cc
Q 028779          202 SF  203 (204)
Q Consensus       202 ~~  203 (204)
                      ||
T Consensus       497 TG  498 (660)
T PLN02430        497 TG  498 (660)
T ss_pred             cc
Confidence            97

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=99.96  E-value=7.9e-29  Score=214.56  Aligned_cols=191  Identities=23%  Similarity=0.220  Sum_probs=149.3

Q ss_pred             cCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCC------C--HHHHHHHHHhcCceEEEechHHHHHHHhCCC
Q 028779            9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF------D--LEMFLRAIEKHRVTHIWVVPPLILALAKHGL   80 (204)
Q Consensus         9 ~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~------~--~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~   80 (204)
                      ++.++|++++.+|++|++++.. .+.++..|+++......      +  +..+++.++++++|++.++|.++..+.+...
T Consensus       288 ~~~~~d~~l~~lPl~Hi~~~~~-~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~  366 (696)
T PLN02387        288 KLGKNDVYLAYLPLAHILELAA-ESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVR  366 (696)
T ss_pred             CCCCCCEEEEECcHHHHHHHHH-HHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHH
Confidence            5778999999999999999887 44557778777664431      1  2345678999999999999999998864310


Q ss_pred             CC-------------------------------C--C-------------CC-ccceeeeecCCCCCHHHHHHHHHhCCC
Q 028779           81 VK-------------------------------K--F-------------DL-SSLKLVGSGAAPLGKELMEECAKNVPS  113 (204)
Q Consensus        81 ~~-------------------------------~--~-------------~l-~~lr~~~~~G~~l~~~~~~~~~~~~~~  113 (204)
                      .+                               .  .             .+ .++|.+++||+++++++.++++..+ +
T Consensus       367 ~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~-g  445 (696)
T PLN02387        367 KKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICL-G  445 (696)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHc-C
Confidence            00                               0  0             01 5899999999999999998888777 7


Q ss_pred             CcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCC-CC--CCCCcceEEEecCCcchhhcCCcccc
Q 028779          114 ATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQK-PL--PPNQLGEIWLRGPNMMRGIMLIASII  190 (204)
Q Consensus       114 ~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~-~~--~~g~~Gel~v~g~~~~~gY~~~~~~t  190 (204)
                      +++++.||+||+++.++.....+  ...+++|+|+|+++++|+|++++. .+  .++..|||++|||.++.|||++|++|
T Consensus       446 ~~v~~~YG~TEt~~~~~~~~~~~--~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~GY~~~pe~T  523 (696)
T PLN02387        446 APIGQGYGLTETCAGATFSEWDD--TSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKT  523 (696)
T ss_pred             CCeeEeechhhcccceeecCccc--CCCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEeccCcccchhcCCHHHH
Confidence            89999999999987665544332  456789999999999999954443 22  34557999999999999999999999


Q ss_pred             ccccc--hhh--hcccc
Q 028779          191 LSSWG--FRK--IMHSF  203 (204)
Q Consensus       191 ~~~~~--~~g--w~~~~  203 (204)
                      +++|.  .+|  |||||
T Consensus       524 ~~~f~~d~~G~~W~~TG  540 (696)
T PLN02387        524 DEVYKVDERGMRWFYTG  540 (696)
T ss_pred             hhhhccccCCCceeecC
Confidence            99984  345  99998

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=99.96  E-value=4.6e-28  Score=203.34  Aligned_cols=192  Identities=22%  Similarity=0.255  Sum_probs=166.6

Q ss_pred             ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCCc
Q 028779            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (204)
Q Consensus         8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~   87 (204)
                      ..++++|++++.+|++|..+....++.++..|+++++.+++++..+++.++++++|++.++|++++.++..+........
T Consensus       209 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~  288 (517)
T PRK08008        209 CALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQH  288 (517)
T ss_pred             cCCCCCCeEEEecCcHHHHHHHHHHHHHHhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccccccc
Confidence            35678999999999999988887788999999999999999999999999999999999999999999876554444456


Q ss_pred             cceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCC
Q 028779           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN  167 (204)
Q Consensus        88 ~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~~g  167 (204)
                      ++|.+.++ .+++++..+.+.+.+ ++++++.||+||++..+....... .....++|+|+++++++++| +++++++.|
T Consensus       289 ~l~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~-~~~~~~~G~~~~g~~~~i~d-~~~~~~~~g  364 (517)
T PRK08008        289 CLREVMFY-LNLSDQEKDAFEERF-GVRLLTSYGMTETIVGIIGDRPGD-KRRWPSIGRPGFCYEAEIRD-DHNRPLPAG  364 (517)
T ss_pred             cceeeEEe-cCCCHHHHHHHHHHh-CCeEEeeccccccccccccCCccc-cccCCccccCCCCcEEEEEC-CCCCCCCCC
Confidence            78887775 488999999999988 789999999999986555433222 24456899999999999999 889999999


Q ss_pred             CcceEEEec---CCcchhhcCCccccccccchhhhcccc
Q 028779          168 QLGEIWLRG---PNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       168 ~~Gel~v~g---~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      +.|||+++|   ++++.|||++++.+++.|..+||++||
T Consensus       365 ~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TG  403 (517)
T PRK08008        365 EIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTG  403 (517)
T ss_pred             CcceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeecc
Confidence            999999998   689999999999999999889999997

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=99.96  E-value=2.3e-28  Score=199.21  Aligned_cols=193  Identities=22%  Similarity=0.256  Sum_probs=166.8

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCC---CHHHHHHHHHhcCceEEEechHHHHHHHhCCCCC
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF---DLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK   82 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~---~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~   82 (204)
                      ..+.++++|++++..|++|.+++.. ++.++..|+++++.+..   .+..+.+.++++++|.+.++|++++.|++...  
T Consensus       154 ~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~p~~~~~l~~~~~--  230 (408)
T TIGR01733       154 RRYGLDPDDRVLQFASLSFDASVEE-IFGTLLAGATLVVPPEDEERDAALLAALIAEHPVTVLNLTPSLLALLAAALP--  230 (408)
T ss_pred             HhcCCCCCceEEEecCCccchhHHH-HHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCceEEEeCHHHHHHHHHhhh--
Confidence            3567788999999999999999876 88999999999998764   36899999999999999999999999998754  


Q ss_pred             CCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCC-CCC--CCCCccccCCCceEEEEeCC
Q 028779           83 KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA-GSR--NIGSAGALAPGVEALIVSVD  159 (204)
Q Consensus        83 ~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~-~~~--~~~~~G~p~~~~~v~v~d~~  159 (204)
                       ..+++||.++.+|+++++++.+++++.++++.+++.||+||++.++....... ...  +..++|.|+++++++|+|+ 
T Consensus       231 -~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~-  308 (408)
T TIGR01733       231 -PALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLDD-  308 (408)
T ss_pred             -hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEECC-
Confidence             56789999999999999999999999997799999999999998775322111 111  2678999999999999994 


Q ss_pred             CCCCCCCCCcceEEEecCCcchhhcCCccccccccchh------h--hcccc
Q 028779          160 TQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFR------K--IMHSF  203 (204)
Q Consensus       160 ~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~------g--w~~~~  203 (204)
                      +++++++|+.|||+++|+.++.||+++++.+++.|..+      |  ||+|+
T Consensus       309 ~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TG  360 (408)
T TIGR01733       309 DLRPVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTG  360 (408)
T ss_pred             CCCCCCCCCceEEEecCccccccccCChhhhhcceeeCCCCCCCCceEEECC
Confidence            48999999999999999999999999999998887633      2  99997

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK05857 acyl-CoA synthetase; Validated

Probab=99.96  E-value=2.6e-28  Score=206.06  Aligned_cols=191  Identities=21%  Similarity=0.246  Sum_probs=157.6

Q ss_pred             ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCCc
Q 028779            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (204)
Q Consensus         8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~   87 (204)
                      +....+|++++.+|++|++++.. .+.+++.|+++++ ...++..+++.++++++|+++++|++++.|++.......+++
T Consensus       209 ~~~~~~~~~~~~~p~~h~~~l~~-~~~~l~~G~~~v~-~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~~~~~  286 (540)
T PRK05857        209 VTWVVGETTYSPLPATHIGGLWW-ILTCLMHGGLCVT-GGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANATVP  286 (540)
T ss_pred             cccccCceeeecCCccccchHHH-HHHHhhcceeEEe-cCCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCCCcCc
Confidence            34556889999999999999886 7788999999876 446889999999999999999999999999887665567789


Q ss_pred             cceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCC---CCCCCCccccCCCceEEEEeCCCCCCC
Q 028779           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG---SRNIGSAGALAPGVEALIVSVDTQKPL  164 (204)
Q Consensus        88 ~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~---~~~~~~~G~p~~~~~v~v~d~~~~~~~  164 (204)
                      ++|.++++|++++....+++ +.+ ++++++.||+||++...........   ..+.+++|+|+++++++|+|++...++
T Consensus       287 ~lr~~~~gG~~~~~~~~~~~-~~~-g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~  364 (540)
T PRK05857        287 SLRLVGYGGSRAIAADVRFI-EAT-GVRTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPT  364 (540)
T ss_pred             cceEEEEcCccCCchhHHHH-HHh-CCeeecccCCCcCCceeeecccccccccccccCCcCcccCCcEEEEECccccCcc
Confidence            99999999999998887644 555 7899999999999865443222211   124578999999999999994433333


Q ss_pred             -----CCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          165 -----PPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       165 -----~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                           +.|+.|||+++|+.++.|||++++.+++.|. +|||+||
T Consensus       365 ~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~~-~g~~~TG  407 (540)
T PRK05857        365 APGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLI-DGWVNTG  407 (540)
T ss_pred             ccccCCCCCcceEEEeCcchhhhhhCCccchhhhcC-CCceecc
Confidence                 4578999999999999999999999999997 8999997

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=99.96  E-value=2.1e-28  Score=224.21  Aligned_cols=196  Identities=17%  Similarity=0.165  Sum_probs=168.4

Q ss_pred             cccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC---CCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCC
Q 028779            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA---KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV   81 (204)
Q Consensus         5 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~---~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~   81 (204)
                      ...++++++|++++..|++|..++.. ++.+|..|+++++.+   ..++..+++.++++++|++.++|+++..+++....
T Consensus       631 ~~~~~~~~~d~~l~~~~~~fd~~~~~-~~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~  709 (1296)
T PRK10252        631 QNHYPLTADDVVLQKTPCSFDVSVWE-FFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTP  709 (1296)
T ss_pred             HHhcCCCCCCEEEEeCCcchhhhHHH-HHHHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhcc
Confidence            45678899999999999999999877 888999999999986   35899999999999999999999999998876432


Q ss_pred             C--CCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCC-----CCCCCCccccCCCceEE
Q 028779           82 K--KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG-----SRNIGSAGALAPGVEAL  154 (204)
Q Consensus        82 ~--~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~-----~~~~~~~G~p~~~~~v~  154 (204)
                      .  ...++++|.+++||+++++++.+++.+.+ ++++++.||+||++..++.......     .....++|+|+++++++
T Consensus       710 ~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~  788 (1296)
T PRK10252        710 EGARQSCASLRQVFCSGEALPADLCREWQQLT-GAPLHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNTGLR  788 (1296)
T ss_pred             ccccccCCCccEEEEecCCCCHHHHHHHHhcC-CCEEEeCCCcchhhheeeeeecccccccccCCCCCCcccccCCCEEE
Confidence            2  23467999999999999999999999887 7899999999999876654332211     23356899999999999


Q ss_pred             EEeCCCCCCCCCCCcceEEEecCCcchhhcCCccccccccchh------hhcccc
Q 028779          155 IVSVDTQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFR------KIMHSF  203 (204)
Q Consensus       155 v~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~------gw~~~~  203 (204)
                      |+| +++++++.|+.|||+++|+.+++||+++++.|++.|..+      +||+||
T Consensus       789 i~d-~~~~~~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TG  842 (1296)
T PRK10252        789 ILD-ARMRPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTG  842 (1296)
T ss_pred             EEC-CCCCCCCCCCceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecC
Confidence            999 899999999999999999999999999999999998643      499997

>PRK12582 acyl-CoA synthetase; Provisional

Probab=99.96  E-value=1.3e-28  Score=211.18  Aligned_cols=181  Identities=22%  Similarity=0.202  Sum_probs=149.9

Q ss_pred             CcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC-CCH---HHHHHHHHhcCceEEEechHHHHHHHhCCCC----CCC
Q 028779           13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDL---EMFLRAIEKHRVTHIWVVPPLILALAKHGLV----KKF   84 (204)
Q Consensus        13 ~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~-~~~---~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~----~~~   84 (204)
                      +|++++++|++|++++...++.++..|+++++.+. +++   ..+++.++++++|+++++|+++..|++....    ...
T Consensus       264 ~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~  343 (624)
T PRK12582        264 PPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRS  343 (624)
T ss_pred             CceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHH
Confidence            58999999999999988777889999999999763 444   3567778899999999999999988754221    123


Q ss_pred             CCccceeeeecCCCCCHHHHHHHHHhC----C-CCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCC
Q 028779           85 DLSSLKLVGSGAAPLGKELMEECAKNV----P-SATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVD  159 (204)
Q Consensus        85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~----~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~  159 (204)
                      ++++||.+++||+++++++.+++.+.+    + ++++++.||+||++.++......  ....+++|+|+|++++++++  
T Consensus       344 ~~~slr~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~--~~~~~svG~p~pg~~v~i~~--  419 (624)
T PRK12582        344 FFKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHWD--TERVGLIGLPLPGVELKLAP--  419 (624)
T ss_pred             HhhheeEEEecCCCCCHHHHHHHHHHHHhhcCCCceEEeccccccccceeecccCC--CCCCCCCCcCCCCcEEEEcc--
Confidence            467999999999999999999999863    2 36799999999998766532222  24567899999999999964  


Q ss_pred             CCCCCCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          160 TQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       160 ~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                            .|+.|||+++|++++.|||++++.|++.|..+||||||
T Consensus       420 ------~G~~GEl~vrg~~v~~GY~~~p~~t~~~f~~dgw~~TG  457 (624)
T PRK12582        420 ------VGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLG  457 (624)
T ss_pred             ------CCCceEEEEECCcccccccCCccchhhhcCccCCcccc
Confidence                  47789999999999999999999999999878999997

>PRK12316 peptide synthase; Provisional

Probab=99.96  E-value=1.2e-28  Score=244.66  Aligned_cols=196  Identities=17%  Similarity=0.223  Sum_probs=171.5

Q ss_pred             cccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC--CCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCC
Q 028779            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK   82 (204)
Q Consensus         5 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~--~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~   82 (204)
                      ...++++++|++++.+|++|..+... ++.+|..|+++++.+.  +++..+++.|+++++|+++++|++++.|.+.....
T Consensus      4727 ~~~~~~~~~d~~l~~~~~~fd~~~~~-~~~~L~~G~~lvi~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~ 4805 (5163)
T PRK12316       4727 GERYELTPDDRVLQFMSFSFDGSHEG-LYHPLINGASVVIRDDSLWDPERLYAEIHEHRVTVLVFPPVYLQQLAEHAERD 4805 (5163)
T ss_pred             HHhcCCCcCCeEEEecCcchhhHHHH-HHHHHhCCCEEEEcCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhhhccc
Confidence            44678899999999999999999876 8899999999999864  38999999999999999999999999998765433


Q ss_pred             CCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCC---CCCCCCCccccCCCceEEEEeCC
Q 028779           83 KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA---GSRNIGSAGALAPGVEALIVSVD  159 (204)
Q Consensus        83 ~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~---~~~~~~~~G~p~~~~~v~v~d~~  159 (204)
                      . ++++||.+++|||++++++.+++.+.++++++++.||+||++..++......   ......++|+|+++++++|+| +
T Consensus      4806 ~-~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~ 4883 (5163)
T PRK12316       4806 G-EPPSLRVYCFGGEAVAQASYDLAWRALKPVYLFNGYGPTETTVTVLLWKARDGDACGAAYMPIGTPLGNRSGYVLD-G 4883 (5163)
T ss_pred             c-CCCCccEEEEecccCCHHHHHHHHHhCCCCEEEecccCccceEEEEEEEcccccccCCCCCcccccccCCEEEEEC-C
Confidence            2 6789999999999999999999998888899999999999988765443222   123456899999999999999 8


Q ss_pred             CCCCCCCCCcceEEEecCCcchhhcCCccccccccch-------hhhcccc
Q 028779          160 TQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGF-------RKIMHSF  203 (204)
Q Consensus       160 ~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~-------~gw~~~~  203 (204)
                      .+++++.|+.|||+|+|+++++|||++++.|+++|..       ++|||||
T Consensus      4884 ~~~~~p~g~~GEl~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTG 4934 (5163)
T PRK12316       4884 QLNPLPVGVAGELYLGGEGVARGYLERPALTAERFVPDPFGAPGGRLYRTG 4934 (5163)
T ss_pred             CCCcCCCCCCceEEECCcccchhhcCChhhhhhhccCCCCCCCCcceeecC
Confidence            8999999999999999999999999999999999853       3599997

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=99.96  E-value=5.1e-29  Score=213.17  Aligned_cols=188  Identities=22%  Similarity=0.314  Sum_probs=147.4

Q ss_pred             ccc-CCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CC--CHHHHHHHHH--hcCceEEEechHHHHHHHhCCC
Q 028779            7 ETA-GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KF--DLEMFLRAIE--KHRVTHIWVVPPLILALAKHGL   80 (204)
Q Consensus         7 ~~~-~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~--~~~~~~~~i~--~~~~t~~~~~p~~~~~l~~~~~   80 (204)
                      .++ +.++|++++++|++|.+++...++.++..|.++++.+ .+  ++..+++.++  +++++.+..+|+++..+++...
T Consensus       228 ~~~~~~~~~~~l~~~Pl~h~~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~  307 (612)
T PRK12476        228 SIDLLDRNTHGVSWLPLYHDMGLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRG  307 (612)
T ss_pred             HhccCCCCceEEEeCCcccccchHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhc
Confidence            345 6788999999999999999874545554444444433 23  8999999995  5899999999999888776421


Q ss_pred             ----CCCCCCccceeeeecCCCCCHHHHHHHHHhCC-----CCcEEcccccccccccccccCCCCC--------------
Q 028779           81 ----VKKFDLSSLKLVGSGAAPLGKELMEECAKNVP-----SATVIQGYGLTETSGIATMENSFAG--------------  137 (204)
Q Consensus        81 ----~~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~-----~~~~~~~yG~tE~~~~~~~~~~~~~--------------  137 (204)
                          ....+++++| +++||+++++++.+++.+.|+     ..++++.||+||++..++....+..              
T Consensus       308 ~~~~~~~~~l~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g  386 (612)
T PRK12476        308 LPAEGDDIDLSNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAG  386 (612)
T ss_pred             ChhhhcCcchhHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCC
Confidence                1234678999 999999999999999999873     3469999999998765443221110              


Q ss_pred             -----------CCCCCCccccCCCceEEEEeCCCCCCCCCCCcceEEEecCCcchhhcCCccccccccc
Q 028779          138 -----------SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWG  195 (204)
Q Consensus       138 -----------~~~~~~~G~p~~~~~v~v~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~  195 (204)
                                 .....++|+|+++++++|+|++++++++.|+.|||+++|++++.|||++++.|+++|.
T Consensus       387 ~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~  455 (612)
T PRK12476        387 RAVRVAADAPNAVAHVSCGQVARSQWAVIVDPDTGAELPDGEVGEIWLHGDNIGRGYWGRPEETERTFG  455 (612)
T ss_pred             CeeecCCCCCCcceeEeCCCcCCCCEEEEEeCCCCcCCCCCCEEEEEEcCCcccccccCChHHHHHHHh
Confidence                       0122478999999999999965599999999999999999999999999999998884

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=99.96  E-value=5.7e-28  Score=202.48  Aligned_cols=193  Identities=25%  Similarity=0.307  Sum_probs=166.1

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCC--CCC
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--VKK   83 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~~~   83 (204)
                      ..+++.++|++++.+|++|..+... .+.++..|+++++.+.+++..+++.++++++|++.++|+++..|++...  ...
T Consensus       189 ~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~  267 (509)
T PRK12406        189 LIYGLKPGIRALLTGPLYHSAPNAY-GLRAGRLGGVLVLQPRFDPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAK  267 (509)
T ss_pred             hhcCCCCCceEEEEeCCcccchHHH-HHHHHhhheEEEEccCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCchhhccc
Confidence            4567889999999999999988777 5567889999999888999999999999999999999999999987543  234


Q ss_pred             CCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCC
Q 028779           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP  163 (204)
Q Consensus        84 ~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~  163 (204)
                      .+++++|.++.+|+++++++.+++.+.+ ++.+++.||+||++.++..... +.....+++|.|+++++++++| +++++
T Consensus       268 ~~~~~l~~v~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d-~~~~~  344 (509)
T PRK12406        268 YDVSSLRHVIHAAAPCPADVKRAMIEWW-GPVIYEYYGSTESGAVTFATSE-DALSHPGTVGKAAPGAELRFVD-EDGRP  344 (509)
T ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHHHc-CCcEEeeccccccCceEecCcc-cccccCCCcCccCCCcEEEEEC-CCCCC
Confidence            5678999999999999999999999988 6889999999999876554322 2224557899999999999999 77899


Q ss_pred             CCCCCcceEEEecCCcch-hhcCCccccccccchhhhcccc
Q 028779          164 LPPNQLGEIWLRGPNMMR-GIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       164 ~~~g~~Gel~v~g~~~~~-gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      ++.|+.|||+++|+.++. ||+++++.+++.+. +|||+|+
T Consensus       345 ~~~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~~-~~~~~TG  384 (509)
T PRK12406        345 LPQGEIGEIYSRIAGNPDFTYHNKPEKRAEIDR-GGFITSG  384 (509)
T ss_pred             CCCCCceEEEEECCccccccccCCchhcccccC-CCCeEEc
Confidence            999999999999999876 99999988877665 8999997

>PRK13383 acyl-CoA synthetase; Provisional

Probab=99.96  E-value=5.7e-28  Score=202.88  Aligned_cols=189  Identities=19%  Similarity=0.212  Sum_probs=162.3

Q ss_pred             cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCC--CCC
Q 028779            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKF   84 (204)
Q Consensus         7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~--~~~   84 (204)
                      .++++++|+++..+|++|.+++.. ++.++..|++++..+.+++..+++.++++++|.+.++|+++..+.+....  ...
T Consensus       211 ~~~~~~~d~~~~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  289 (516)
T PRK13383        211 RTRLRTGSRISVAMPMFHGLGLGM-LMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVRARN  289 (516)
T ss_pred             hhccCCCCeEEEecCCcchhhHHH-HHHHHhcCCEEEECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccccccC
Confidence            456788999999999999999977 77889999999998889999999999999999999999999999875431  234


Q ss_pred             CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 028779           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL  164 (204)
Q Consensus        85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~  164 (204)
                      +++++|.++++|+++++++.+++.+.| +..+++.||+||++........ .......++|+|+|+++++|+| ++++++
T Consensus       290 ~~~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d-~~~~~~  366 (516)
T PRK13383        290 PLPQLRVVMSSGDRLDPTLGQRFMDTY-GDILYNGYGSTEVGIGALATPA-DLRDAPETVGKPVAGCPVRILD-RNNRPV  366 (516)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHc-Cchhhhcccccccccceecccc-ccccCCCcccCCCCCcEEEEEC-CCCCCC
Confidence            568999999999999999999999998 6789999999999876554332 2234567899999999999999 788999


Q ss_pred             CCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          165 PPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       165 ~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      ++|+.|||+++|+.++.||++++.   +.+ .+||++||
T Consensus       367 ~~g~~Gel~v~g~~~~~~Y~~~~~---~~~-~~g~~~TG  401 (516)
T PRK13383        367 GPRVTGRIFVGGELAGTRYTDGGG---KAV-VDGMTSTG  401 (516)
T ss_pred             CCCCceEEEEecCcccccccCCch---hhe-ecCceecc
Confidence            999999999999999999998754   223 37999997

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.96  E-value=4.4e-28  Score=202.78  Aligned_cols=188  Identities=23%  Similarity=0.288  Sum_probs=165.2

Q ss_pred             CCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCC--CCCCCcc
Q 028779           11 ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKFDLSS   88 (204)
Q Consensus        11 ~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~--~~~~l~~   88 (204)
                      ..++++++++|++|.+++.. .+.++..|+++++.+.+++..+++.++++++|++.++|+++..+++.+..  ...++++
T Consensus       185 ~~~~~~l~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~  263 (502)
T PRK08276        185 GPDSVYLSPAPLYHTAPLRF-GMSALALGGTVVVMEKFDAEEALALIERYRVTHSQLVPTMFVRMLKLPEEVRARYDVSS  263 (502)
T ss_pred             CCCCEEEEcCcHHHHHHHHH-HHHHHhccceEEEcCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCccccCCCCCccc
Confidence            46789999999999999887 56789999999999989999999999999999999999999999876532  3456789


Q ss_pred             ceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCCC
Q 028779           89 LKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQ  168 (204)
Q Consensus        89 lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~~g~  168 (204)
                      +|.++++|++++.++.+++.+.+ +..+++.||+||++.++...... .....+++|+|+ +++++++| +++++++.|+
T Consensus       264 lr~i~~~g~~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~-~~~~~~~~G~~~-~~~~~i~d-~~~~~~~~g~  339 (502)
T PRK08276        264 LRVAIHAAAPCPVEVKRAMIDWW-GPIIHEYYASSEGGGVTVITSED-WLAHPGSVGKAV-LGEVRILD-EDGNELPPGE  339 (502)
T ss_pred             ceEEEecCCCCCHHHHHHHHHHh-CcHhhhhcccccccceeEecCcc-ccccCCCcceec-ccEEEEEC-CCCCCCcCCC
Confidence            99999999999999999999988 67899999999998865543221 124457899999 88999999 7789999999


Q ss_pred             cceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          169 LGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       169 ~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      .|||+++|+.++.|||++++.+++.+..+|||+|+
T Consensus       340 ~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TG  374 (502)
T PRK08276        340 IGTVYFEMDGYPFEYHNDPEKTAAARNPHGWVTVG  374 (502)
T ss_pred             ceEEEEECCCccchhcCCHHHHHHHhcCCCceeec
Confidence            99999999999999999999999999877999997

>PRK07470 acyl-CoA synthetase; Validated

Probab=99.96  E-value=3.5e-28  Score=204.55  Aligned_cols=190  Identities=27%  Similarity=0.434  Sum_probs=162.7

Q ss_pred             cCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC--CCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCC
Q 028779            9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (204)
Q Consensus         9 ~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l   86 (204)
                      +.+++|+++..+|++|.+++.. ++ .+..|+++++.+  .++++.+++.++++++|.+.++|++++.+++.+.....++
T Consensus       202 ~~~~~d~~l~~~p~~~~~~~~~-~~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  279 (528)
T PRK07470        202 GTTEQDASLVVAPLSHGAGIHQ-LC-QVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYDH  279 (528)
T ss_pred             CCCcccEEEEeccchhHHHHHH-HH-HHhcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcCCCCC
Confidence            4677899999999999999875 44 466777776664  5799999999999999999999999999998776666778


Q ss_pred             ccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCC------CCCCCCCCccccCCCceEEEEeCCC
Q 028779           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSF------AGSRNIGSAGALAPGVEALIVSVDT  160 (204)
Q Consensus        87 ~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~------~~~~~~~~~G~p~~~~~v~v~d~~~  160 (204)
                      +++|.++++|+++++.+.+++.+.+ +.++++.||+||++.........      ......+++|.|+++++++++| ++
T Consensus       280 ~~lr~~~~gG~~l~~~~~~~~~~~~-g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d-~~  357 (528)
T PRK07470        280 SSLRYVIYAGAPMYRADQKRALAKL-GKVLVQYFGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQD-DE  357 (528)
T ss_pred             cceEEEEEcCCCCCHHHHHHHHHHh-CcHHHHhCCCcccCCceeecchhhccccccccceeeccCcccCCcEEEEEC-CC
Confidence            8999999999999999999999888 67899999999988765432211      0123456899999999999999 78


Q ss_pred             CCCCCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          161 QKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       161 ~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      +++++.|+.|||+++|+.++.|||++++.+++.|. +|||+|+
T Consensus       358 ~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~-~~~~~TG  399 (528)
T PRK07470        358 GRELPPGETGEICVIGPAVFAGYYNNPEANAKAFR-DGWFRTG  399 (528)
T ss_pred             CCCCCCCCceEEEEeCCccchhhcCCHHHHHhhhc-CCcEecc
Confidence            99999999999999999999999999999988887 8999997

>PRK12467 peptide synthase; Provisional

Probab=99.96  E-value=2.2e-28  Score=239.67  Aligned_cols=196  Identities=19%  Similarity=0.232  Sum_probs=170.2

Q ss_pred             cccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC---CCHHHHHHHHHhcCceEEEechHHHHHHHhCCCC
Q 028779            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV   81 (204)
Q Consensus         5 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~   81 (204)
                      ...++++++|++++..|++|+.++.. ++.+|..|+++++.+.   .++..+++.|+++++|+++++|++++.|.+... 
T Consensus      1751 ~~~~~~~~~d~~l~~~~~~fd~~~~~-~~~~L~~G~~lvi~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~- 1828 (3956)
T PRK12467       1751 QEAYQLSAADVVLQFTSFAFDVSVWE-LFWPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDE- 1828 (3956)
T ss_pred             HHhcCCCcccEEEEecCccHHHHHHH-HHHHHhCCCEEEEcChhhcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhhcc-
Confidence            45678899999999999999999877 8899999999999863   589999999999999999999999999987422 


Q ss_pred             CCCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCC---CCCCCCCCccccCCCceEEEEeC
Q 028779           82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSF---AGSRNIGSAGALAPGVEALIVSV  158 (204)
Q Consensus        82 ~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~---~~~~~~~~~G~p~~~~~v~v~d~  158 (204)
                      ...++++||.+++|||++++++.++|.+.+++.+++|.||+||++..++.....   .......++|+|++++++.|+| 
T Consensus      1829 ~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~~~~~~~~~~~~~~~iG~p~~~~~~~vld- 1907 (3956)
T PRK12467       1829 QVEHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIANLSTYILD- 1907 (3956)
T ss_pred             ccccCCCceEEEEccccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeEEEEeccccccccCCCCCcccccCCCEEEEEC-
Confidence            234578999999999999999999999999888999999999998766543222   1123356899999999999999 


Q ss_pred             CCCCCCCCCCcceEEEecCCcchhhcCCccccccccch-------hhhcccc
Q 028779          159 DTQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGF-------RKIMHSF  203 (204)
Q Consensus       159 ~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~-------~gw~~~~  203 (204)
                      +++++++.|+.|||+++|+++++||+++++.|+++|..       ++|||||
T Consensus      1908 ~~~~~vp~G~~GEl~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTG 1959 (3956)
T PRK12467       1908 ASLNPVPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLYRTG 1959 (3956)
T ss_pred             CCCCCCCCCCceEEEeccccccccccCChhhhhhhCcCCCCCCCCccceecc
Confidence            88999999999999999999999999999999998852       3599997

>PRK13391 acyl-CoA synthetase; Provisional

Probab=99.96  E-value=8.2e-28  Score=201.66  Aligned_cols=192  Identities=24%  Similarity=0.289  Sum_probs=165.5

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCC--CCC
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--VKK   83 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~~~   83 (204)
                      ..+++.+++++++.+|++|.+++.. .+.++..|+++++.+.+++..+++.++++++|++.++|+++..+.+...  ...
T Consensus       193 ~~~~~~~~~~~l~~~p~~h~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~  271 (511)
T PRK13391        193 RLWGFRSDMVYLSPAPLYHSAPQRA-VMLVIRLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDK  271 (511)
T ss_pred             HhcCCCCCCeEEEcCCHHHHHHHHH-HHHHHHcCceEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhccc
Confidence            3456778999999999999999877 6788999999999998999999999999999999999999998876543  223


Q ss_pred             CCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCC
Q 028779           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP  163 (204)
Q Consensus        84 ~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~  163 (204)
                      .+++++|.++.+|+++++++.+++++.+ +..+++.||+||++.+..... .......+++|+|+++ .++++| +++++
T Consensus       272 ~~~~~l~~~~~gg~~~~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~-~~~~~~~~~vG~~~~g-~~~i~d-~~~~~  347 (511)
T PRK13391        272 YDLSSLEVAIHAAAPCPPQVKEQMIDWW-GPIIHEYYAATEGLGFTACDS-EEWLAHPGTVGRAMFG-DLHILD-DDGAE  347 (511)
T ss_pred             CCccceeEEEEccCCCCHHHHHHHHHHc-CCceeeeeccccccceEEecC-ccccccCCCcCCcccc-eEEEEC-CCCCC
Confidence            4578999999999999999999999988 688999999999987655432 2223456789999999 689999 88999


Q ss_pred             CCCCCcceEEEecCCcchhhcCCccccccccchh-hhcccc
Q 028779          164 LPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFR-KIMHSF  203 (204)
Q Consensus       164 ~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~-gw~~~~  203 (204)
                      ++.|+.|||+++|+ ++.|||++++.+++.+..+ ||++||
T Consensus       348 ~~~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TG  387 (511)
T PRK13391        348 LPPGEPGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVG  387 (511)
T ss_pred             CCCCCceEEEEecC-cceEEcCChhHhHHhhccCCCEEecC
Confidence            99999999999999 8999999999998887654 999997

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=99.96  E-value=4.7e-28  Score=210.62  Aligned_cols=188  Identities=22%  Similarity=0.371  Sum_probs=156.2

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC-CCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCC
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~   84 (204)
                      ..++++++|++++.+|++|++++...++.++..|+++++.+. +++..+++.++++++|+++.+|+++..+.+..  ...
T Consensus       399 ~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~--~~~  476 (718)
T PRK08043        399 TIADFTPNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA--NPY  476 (718)
T ss_pred             HhhCCCccCeEEEcCcchhhhhhHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc--Ccc
Confidence            446788999999999999999998778899999999998875 57888899999999999999999998887642  335


Q ss_pred             CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 028779           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL  164 (204)
Q Consensus        85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~  164 (204)
                      ++++||.+++||+++++++.+++++.| ++++++.||+||++.........  ....+++|+|+|+++++++| +++.  
T Consensus       477 ~~~~lr~i~~gg~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~--~~~~~svG~p~pg~~~~i~d-~~~~--  550 (718)
T PRK08043        477 DFARLRYVVAGAEKLQESTKQLWQDKF-GLRILEGYGVTECAPVVSINVPM--AAKPGTVGRILPGMDARLLS-VPGI--  550 (718)
T ss_pred             cccceEEEEEeCccCCHHHHHHHHHHc-CCCeecccCcccccceEEecCCc--ccCCCCCCCcCCCCeeEEec-CCCC--
Confidence            678999999999999999999999988 78999999999998766543322  24568999999999999998 4442  


Q ss_pred             CCCCcceEEEecCCcchhhcCC--ccc-------cccccchhhhcccc
Q 028779          165 PPNQLGEIWLRGPNMMRGIMLI--ASI-------ILSSWGFRKIMHSF  203 (204)
Q Consensus       165 ~~g~~Gel~v~g~~~~~gY~~~--~~~-------t~~~~~~~gw~~~~  203 (204)
                        ++.|||+++|++++.|||++  ++.       +.+.+..+||||||
T Consensus       551 --~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TG  596 (718)
T PRK08043        551 --EQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTG  596 (718)
T ss_pred             --CCceEEEEecCCccccccCCCCcccccccccccccccccCCeEecC
Confidence              45699999999999999983  442       22233347999998

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=99.96  E-value=1.2e-27  Score=201.89  Aligned_cols=189  Identities=35%  Similarity=0.514  Sum_probs=164.6

Q ss_pred             CCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCCcccee
Q 028779           12 LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL   91 (204)
Q Consensus        12 ~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~   91 (204)
                      ..+++++.+|++|.+++...++.++..|+++++.+.+++..+++.|+++++|++.++|+++..|++.+.....+++++|.
T Consensus       237 ~~~~~l~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~  316 (541)
T TIGR03205       237 DVERVICVLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRDLSSLAT  316 (541)
T ss_pred             CCceEEEeccHHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCccccccCccccce
Confidence            45799999999999998887888999999999988889999999999999999999999999998765444556789999


Q ss_pred             eeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEe-CCCCCCCCCCCcc
Q 028779           92 VGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVS-VDTQKPLPPNQLG  170 (204)
Q Consensus        92 ~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d-~~~~~~~~~g~~G  170 (204)
                      ++.+|+++++++.+++++.+ +.++++.||+||++..++...... ....+++|.|++++++++++ .+++++++.|+.|
T Consensus       317 i~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~v~~~d~~~~~~~~g~~G  394 (541)
T TIGR03205       317 IGSGGAPLPVEVANFFERKT-GLKLKSGWGMTETCSPGTGHPPEG-PDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEVG  394 (541)
T ss_pred             EEEccccCCHHHHHHHHHHh-CCCeecccccccCCcccccCCCCC-CCCCCCcceeccCceeEEEecCCCCccCCCCCee
Confidence            99999999999999998887 689999999999987766543222 23456899999999988864 2678899999999


Q ss_pred             eEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          171 EIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       171 el~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      ||+++|++++.|||++++.+++.|. ++||+||
T Consensus       395 el~v~~~~~~~gy~~~~~~~~~~~~-~~~~~TG  426 (541)
T TIGR03205       395 ELRIRGPNVTRGYWNRPEESAEAFV-GDRFLTG  426 (541)
T ss_pred             EEEEecCCccccccCChhhhHhhhc-cCCcccC
Confidence            9999999999999999999998887 7999997

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=99.96  E-value=1.2e-27  Score=202.71  Aligned_cols=188  Identities=26%  Similarity=0.368  Sum_probs=162.9

Q ss_pred             CcEEEEecchhhHHHHHHHHHhHhccCcEEEEc-CCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCCcccee
Q 028779           13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL   91 (204)
Q Consensus        13 ~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~   91 (204)
                      ++++++.+|++|.+++....+.++..|+++++. +..++..+++.++++++|++..+|+++..+.+.......++++||.
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~  333 (560)
T PRK08751        254 CEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFSSLKM  333 (560)
T ss_pred             CceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCCcchhhhee
Confidence            467888999999999876566677777777665 4578999999999999999999999999999876655667889999


Q ss_pred             eeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCCCcce
Q 028779           92 VGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGE  171 (204)
Q Consensus        92 ~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~~g~~Ge  171 (204)
                      +++||+++++++.+.+++.+ ++.+++.||+||++..+..... ......+++|.|+++++++++| +++++++.|+.||
T Consensus       334 v~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~-~~~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g~~Ge  410 (560)
T PRK08751        334 TLGGGMAVQRSVAERWKQVT-GLTLVEAYGLTETSPAACINPL-TLKEYNGSIGLPIPSTDACIKD-DAGTVLAIGEIGE  410 (560)
T ss_pred             eeeCCCCCCHHHHHHHHHHh-CCeEEEeeccccCCCceecccc-cccccCCCcCccCCCceEEEEC-CCCCCCCCCCceE
Confidence            99999999999999999987 7889999999999876654432 2123456899999999999999 8899999999999


Q ss_pred             EEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          172 IWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       172 l~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      |+++|+.+++|||++++.+++.|..+|||+|+
T Consensus       411 l~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TG  442 (560)
T PRK08751        411 LCIKGPQVMKGYWKRPEETAKVMDADGWLHTG  442 (560)
T ss_pred             EEEecCccchhhcCChhhhhhccccCCCcccc
Confidence            99999999999999999999888878999997

>PRK05691 peptide synthase; Validated

Probab=99.96  E-value=4.4e-28  Score=238.98  Aligned_cols=195  Identities=20%  Similarity=0.228  Sum_probs=170.7

Q ss_pred             cccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC---CCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCC
Q 028779            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA---KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV   81 (204)
Q Consensus         5 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~---~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~   81 (204)
                      ...+++.++|++++..|++|..++.. ++.+|..|+++++.+   ..++..+++.++++++|++.++|++++.+.+... 
T Consensus      1306 ~~~~~~~~~d~~l~~~~~~fd~s~~~-~~~~L~~G~~l~i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~- 1383 (4334)
T PRK05691       1306 QATYALDDSDVLMQKAPISFDVSVWE-CFWPLITGCRLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPL- 1383 (4334)
T ss_pred             HHhcCCCCCCEEEEeCCccHHHHHHH-HHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCcc-
Confidence            34578899999999999999998876 889999999999985   3689999999999999999999999999987543 


Q ss_pred             CCCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCC
Q 028779           82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQ  161 (204)
Q Consensus        82 ~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~  161 (204)
                       ...+++||.+++|||++++++.++|.+.+|+++++|.||+||++..++............++|+|+++++++|+| +++
T Consensus      1384 -~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~ 1461 (4334)
T PRK05691       1384 -AAACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAEDGERSPIGRPLGNVLCRVLD-AEL 1461 (4334)
T ss_pred             -cccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeeeeeecccccCCCCcccceeCCCEEEEEC-CCC
Confidence             345789999999999999999999999999999999999999987665432222234456899999999999999 889


Q ss_pred             CCCCCCCcceEEEecCCcchhhcCCccccccccch-------hhhcccc
Q 028779          162 KPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGF-------RKIMHSF  203 (204)
Q Consensus       162 ~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~-------~gw~~~~  203 (204)
                      ++++.|+.|||+|+|+++++|||++++.|.++|..       ++|||||
T Consensus      1462 ~~vp~G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTG 1510 (4334)
T PRK05691       1462 NLLPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTG 1510 (4334)
T ss_pred             CCCCCCCceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEcc
Confidence            99999999999999999999999999999998853       3599997

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=99.95  E-value=1.7e-27  Score=199.04  Aligned_cols=196  Identities=17%  Similarity=0.174  Sum_probs=167.9

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC---CCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCC
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK   82 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~   82 (204)
                      ..+.+..+|++++.+|++|..++.. ++.++..|+++++.++   .++..+++.+++++++.+..+|++++.+.......
T Consensus       177 ~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~  255 (503)
T PRK04813        177 EDFALPEGPQFLNQAPYSFDLSVMD-LYPTLASGGTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFN  255 (503)
T ss_pred             HHcCCCcCceeeecCCcchhHhHHH-HHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccC
Confidence            4467788999999999999998876 7789999999998875   48999999999999999999999998877655445


Q ss_pred             CCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCC---CCCCCCCCccccCCCceEEEEeCC
Q 028779           83 KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSF---AGSRNIGSAGALAPGVEALIVSVD  159 (204)
Q Consensus        83 ~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~---~~~~~~~~~G~p~~~~~v~v~d~~  159 (204)
                      ...++++|.++++|+++++.+.+++.+.|++..+++.||+||++.........   .......++|+|.++++++|+| +
T Consensus       256 ~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~  334 (503)
T PRK04813        256 EEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIID-E  334 (503)
T ss_pred             cccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEecccccccCCCCcccccCCCCEEEEEC-C
Confidence            56788999999999999999999999999889999999999997654432111   1123455799999999999999 8


Q ss_pred             CCCCCCCCCcceEEEecCCcchhhcCCccccccccch-h--hhcccc
Q 028779          160 TQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGF-R--KIMHSF  203 (204)
Q Consensus       160 ~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~-~--gw~~~~  203 (204)
                      ++++++.|+.|||+++|+.++.|||++++.+.+.|.. +  +||+||
T Consensus       335 ~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tG  381 (503)
T PRK04813        335 EGTKLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTG  381 (503)
T ss_pred             CCCCCCCCCceEEEEeccccccccCCChhHhHHhhccCCCceeEECC
Confidence            8999999999999999999999999999999887742 3  599997

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.95  E-value=2.5e-27  Score=199.97  Aligned_cols=191  Identities=22%  Similarity=0.282  Sum_probs=160.4

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCC
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~   84 (204)
                      ..++.+++|++++++|++|.+++.. ++.++..|+++++.+ .+++..+++.++++++|++.++|+++..+++.......
T Consensus       212 ~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~  290 (539)
T PRK07008        212 DAMGLSARDAVLPVVPMFHVNAWGL-PYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGL  290 (539)
T ss_pred             cccCCCCCceEEecCchHHhhhHHH-HHHHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccCC
Confidence            3567788999999999999988766 678889999999874 57999999999999999999999999999987665667


Q ss_pred             CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCC---------CCCCCCCccccCCCceEEE
Q 028779           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA---------GSRNIGSAGALAPGVEALI  155 (204)
Q Consensus        85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~---------~~~~~~~~G~p~~~~~v~v  155 (204)
                      +++++|.++++|+++++++.+++.+.+ +..+++.||+||++..++......         ......++|+|+|+++++|
T Consensus       291 ~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i  369 (539)
T PRK07008        291 RFSTLRRTVIGGSACPPAMIRTFEDEY-GVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKI  369 (539)
T ss_pred             CcccceEEEEcCCCCCHHHHHHHHHHh-CCceecccccccccccceecccccccccCCchhhhhhcccCCccccceEEEE
Confidence            788999999999999999999999988 789999999999987554322110         0112357899999999999


Q ss_pred             EeCCCCCCCCCC--CcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          156 VSVDTQKPLPPN--QLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       156 ~d~~~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      +| +++++++.+  +.|||+++|+.++.|||++++   +.+. +|||+|+
T Consensus       370 ~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~---~~~~-~g~~~TG  414 (539)
T PRK07008        370 VG-DDGRELPWDGKAFGDLQVRGPWVIDRYFRGDA---SPLV-DGWFPTG  414 (539)
T ss_pred             EC-CCCCccCCCCCcceEEEEeCCccchhhcCChh---hhhc-CCCcccC
Confidence            99 778888653  579999999999999999883   3454 7999997

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.95  E-value=6.3e-27  Score=198.36  Aligned_cols=189  Identities=26%  Similarity=0.385  Sum_probs=164.6

Q ss_pred             CCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCCccc
Q 028779           11 ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSL   89 (204)
Q Consensus        11 ~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~l   89 (204)
                      ..+++++.++|++|++++....+..+..|+++++.. ..++..+++.++++++|.+.++|++++.|.+.......+++++
T Consensus       248 ~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l  327 (560)
T PRK08974        248 PGKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSSL  327 (560)
T ss_pred             CCccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcccCCccce
Confidence            446788999999999998776777888999877764 5688999999999999999999999999988765556677899


Q ss_pred             eeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCCCc
Q 028779           90 KLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQL  169 (204)
Q Consensus        90 r~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~~g~~  169 (204)
                      |.++++|+++++.+.++|++.+ ++++++.||+||++..+....... .....++|.|+|+++++++| ++++++++|+.
T Consensus       328 r~~~~gg~~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~~-~~~~~~~~g~~  404 (560)
T PRK08974        328 KLSVGGGMAVQQAVAERWVKLT-GQYLLEGYGLTECSPLVSVNPYDL-DYYSGSIGLPVPSTEIKLVD-DDGNEVPPGEP  404 (560)
T ss_pred             eEEEecCccCCHHHHHHHHHHh-CCcEEeeecccccCceeeccCCCC-cccCCccccCcCCCEEEEEC-CCCCCCCCCCc
Confidence            9999999999999999999987 789999999999987766543322 34467899999999999999 67899999999


Q ss_pred             ceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          170 GEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       170 Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      |||+++|+.++.||+++++.+++.|. +|||+|+
T Consensus       405 Gel~v~g~~~~~gy~~~~~~~~~~~~-~g~~~TG  437 (560)
T PRK08974        405 GELWVKGPQVMLGYWQRPEATDEVIK-DGWLATG  437 (560)
T ss_pred             eEEEEecCCcchhhcCChhhhhhhhh-cCCcccC
Confidence            99999999999999999999988885 8999997

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.95  E-value=8.3e-27  Score=198.29  Aligned_cols=193  Identities=20%  Similarity=0.254  Sum_probs=159.7

Q ss_pred             cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCC
Q 028779            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (204)
Q Consensus         7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~   85 (204)
                      .+++.++|++++.+|++|.+++.. .+.++..|+++++.+ .+++..+++.++++++|.++++|+++..++........+
T Consensus       218 ~~~~~~~~~~l~~~pl~h~~g~~~-~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~  296 (576)
T PRK05620        218 SLAVTHGESFLCCVPIYHVLSWGV-PLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPPE  296 (576)
T ss_pred             hcCCCCCCeEEEeCChHHhhhhHH-HHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCcc
Confidence            467888999999999999999877 788899999998875 579999999999999999999999999887653323334


Q ss_pred             CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCC------CCCCCCccccCCCceEEEEeCC
Q 028779           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG------SRNIGSAGALAPGVEALIVSVD  159 (204)
Q Consensus        86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~------~~~~~~~G~p~~~~~v~v~d~~  159 (204)
                      ..++|.++++|+++++.+.+++++.+ ++++++.||+||++..+........      .....++|++.++++++++| +
T Consensus       297 ~~~l~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~  374 (576)
T PRK05620        297 RMSLQEIYVGGSAVPPILIKAWEERY-GVDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVN-D  374 (576)
T ss_pred             cCceeEEEEcCCCCCHHHHHHHHHHh-CCceeeeccccccccceeeeccCCccccccccccccccCCcCCceeEEEec-C
Confidence            46899999999999999999999988 6899999999999876654322110      11234789999999999999 5


Q ss_pred             CCCCCC--CCCcceEEEecCCcchhhcCCcccc----------------ccccchhhhcccc
Q 028779          160 TQKPLP--PNQLGEIWLRGPNMMRGIMLIASII----------------LSSWGFRKIMHSF  203 (204)
Q Consensus       160 ~~~~~~--~g~~Gel~v~g~~~~~gY~~~~~~t----------------~~~~~~~gw~~~~  203 (204)
                       ++.++  +++.|||+++|++++.|||++++.+                .+++..+|||+||
T Consensus       375 -g~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TG  435 (576)
T PRK05620        375 -GQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTG  435 (576)
T ss_pred             -CccccCCCCCceEEEEEcCcccccccCCccccccccccccccccchhhhcccccCCcEecC
Confidence             66664  4789999999999999999999887                3345567999997

>PRK05691 peptide synthase; Validated

Probab=99.95  E-value=4e-27  Score=232.26  Aligned_cols=194  Identities=13%  Similarity=0.118  Sum_probs=170.3

Q ss_pred             cccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC---CCHHHHHHHHHhcCceEEEechHHHHHHHhCCCC
Q 028779            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV   81 (204)
Q Consensus         5 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~   81 (204)
                      ...++++++|+++...+++|+.++.. ++.+|..|+++++.+.   .++..+++.++++++|++..+|++++.+++..  
T Consensus      3902 ~~~~~~~~~~~~~~~~s~~fd~s~~~-~~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~-- 3978 (4334)
T PRK05691       3902 VPYLALSEADVIAQTASQSFDISVWQ-FLAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAED-- 3978 (4334)
T ss_pred             HHhcCCCccceEEEecCCchhHHHHH-HHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhc--
Confidence            45678999999999999999999988 8899999999999864   58999999999999999999999999887642  


Q ss_pred             CCCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCC--CCCCCCccccCCCceEEEEeCC
Q 028779           82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG--SRNIGSAGALAPGVEALIVSVD  159 (204)
Q Consensus        82 ~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~--~~~~~~~G~p~~~~~v~v~d~~  159 (204)
                       ...+++||.+++|||++++++.++|.+.+++++++|.||+||++..++.......  .....++|+|++++++.|+| +
T Consensus      3979 -~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~ 4056 (4334)
T PRK05691       3979 -RQALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLASTRGSYLPIGSPTDNNRLYLLD-E 4056 (4334)
T ss_pred             -cccCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEcccccccCCcCCCCCccCCCEEEEEC-C
Confidence             3346799999999999999999999999999999999999999886654332221  22345799999999999999 8


Q ss_pred             CCCCCCCCCcceEEEecCCcchhhcCCccccccccc-------hhhhcccc
Q 028779          160 TQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWG-------FRKIMHSF  203 (204)
Q Consensus       160 ~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~-------~~gw~~~~  203 (204)
                      .+++++.|..|||+|+|+.+++|||++|+.|+++|.       .++|||||
T Consensus      4057 ~~~~~p~g~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTG 4107 (4334)
T PRK05691       4057 ALELVPLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTG 4107 (4334)
T ss_pred             CCCCCCCCCceEEEEecccccccccCCcccchhhcccCCCCCCCceeeccC
Confidence            999999999999999999999999999999999995       25799997

>PRK07867 acyl-CoA synthetase; Validated

Probab=99.95  E-value=2e-26  Score=194.15  Aligned_cols=189  Identities=23%  Similarity=0.232  Sum_probs=158.9

Q ss_pred             cccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCC
Q 028779            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (204)
Q Consensus         5 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~   84 (204)
                      ...++++++|++++.+|++|.+++...++.++..|+++++.+++++..+++.++++++|++.++|+.+..++........
T Consensus       185 ~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~~~  264 (529)
T PRK07867        185 AQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPERPDD  264 (529)
T ss_pred             HHhhCCCcccEEEEecchhHHHHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCcccc
Confidence            34567889999999999999999988777899999999999989999999999999999999999999999876543333


Q ss_pred             CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 028779           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL  164 (204)
Q Consensus        85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~  164 (204)
                      ..+++|. ++||+.+++.. +++.+.+ ++++++.||+||++.......    ....+++|.|+++  ++++|+++++++
T Consensus       265 ~~~~lr~-~~gg~~~~~~~-~~~~~~~-g~~l~~~YG~TE~~~~~~~~~----~~~~~~~g~~~~~--~~i~~~~~~~~~  335 (529)
T PRK07867        265 ADNPLRI-VYGNEGAPGDI-ARFARRF-GCVVVDGFGSTEGGVAITRTP----DTPPGALGPLPPG--VAIVDPDTGTEC  335 (529)
T ss_pred             cccceEE-EecCCCChHHH-HHHHHHh-CCcEEEeecccccccccccCC----CCCCCCcCCCCCC--EEEEECCCCCCC
Confidence            3457874 56888887764 6777777 789999999999986544321    1345679999998  778888889999


Q ss_pred             CCCC------------cceEEE-ecCCcchhhcCCccccccccchhhhcccc
Q 028779          165 PPNQ------------LGEIWL-RGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       165 ~~g~------------~Gel~v-~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      +.|+            .|||++ +|++++.|||++++.+.+.|. +|||+||
T Consensus       336 ~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~~-~g~~~TG  386 (529)
T PRK07867        336 PPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMR-GGVYWSG  386 (529)
T ss_pred             CCCccccccccccCCcceEEEEecCCcccccccCChHhhhhhhc-CCeEeec
Confidence            9888            999999 999999999999999998887 8999997

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=99.94  E-value=6.8e-26  Score=191.41  Aligned_cols=191  Identities=20%  Similarity=0.274  Sum_probs=159.2

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCC
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~   84 (204)
                      ..++++.+|+++..+|++|.+++.. .+.++..|+++++.. .+++..+++.++++++|.+.++|+++..+++.......
T Consensus       213 ~~~~~~~~d~~~~~~p~~h~~~~~~-~~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~  291 (542)
T PRK06018        213 DALGTSAADTMLPVVPLFHANSWGI-AFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGL  291 (542)
T ss_pred             hhcCCCCCCEEEEecCHHHHhhhHH-HHhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccCC
Confidence            3567889999999999999999877 567889999998874 57899999999999999999999999999877655556


Q ss_pred             CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCC---------CCCCCCccccCCCceEEE
Q 028779           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG---------SRNIGSAGALAPGVEALI  155 (204)
Q Consensus        85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~---------~~~~~~~G~p~~~~~v~v  155 (204)
                      +++++|.++++|+++++++.++|++ + ++++++.||+||++.+.+.......         .....++|+|.++++++|
T Consensus       292 ~~~~lr~~~~~G~~l~~~~~~~~~~-~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v  369 (542)
T PRK06018        292 KLPHLKMVVCGGSAMPRSMIKAFED-M-GVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKI  369 (542)
T ss_pred             CcccceEEEEcCCCCCHHHHHHHHH-h-CCCeEeeecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEE
Confidence            7789999999999999999999999 6 8999999999999877654321110         112357899999999999


Q ss_pred             EeCCCCCCCCCC--CcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          156 VSVDTQKPLPPN--QLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       156 ~d~~~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      +| +++++++.+  ..|||+++|++++.|||++   +.+.++.+|||+|+
T Consensus       370 ~d-~~~~~~~~~~~~~Gel~i~g~~~~~gy~~~---~~~~~~~~~~~~TG  415 (542)
T PRK06018        370 TD-DAGKELPWDGKTFGRLKVRGPAVAAAYYRV---DGEILDDDGFFDTG  415 (542)
T ss_pred             EC-CCCCCCCCCCCceeEEEEecCCcchhhhcC---cccEecCCcEEEcC
Confidence            99 778887653  6799999999999999983   23445568999997

>PRK13388 acyl-CoA synthetase; Provisional

Probab=99.94  E-value=5.2e-26  Score=192.06  Aligned_cols=190  Identities=19%  Similarity=0.190  Sum_probs=154.9

Q ss_pred             cccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCC
Q 028779            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (204)
Q Consensus         5 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~   84 (204)
                      ...++++++|++++.+|++|.+++...++.++..|+++++.+.+++..+++.++++++|++..+|+.+..+++.+.....
T Consensus       183 ~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~~~  262 (540)
T PRK13388        183 TERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPERPDD  262 (540)
T ss_pred             HHHhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCcEEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCCccc
Confidence            34577889999999999999999887666789999999998889999999999999999999999999999876543323


Q ss_pred             CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEE----------
Q 028779           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEAL----------  154 (204)
Q Consensus        85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~----------  154 (204)
                      ...++|.+ + |+++++...+++.+.+ +.++++.||+||++.++....    ....+++|+|++++++.          
T Consensus       263 ~~~~l~~~-~-G~~~~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~----~~~~~~vG~p~~g~~i~~~~~~~~~~~  335 (540)
T PRK13388        263 ADNPLRVA-F-GNEASPRDIAEFSRRF-GCQVEDGYGSSEGAVIVVREP----GTPPGSIGRGAPGVAIYNPETLTECAV  335 (540)
T ss_pred             cccceEEE-E-CCCCCHHHHHHHHHHh-CCceecccccccccceeecCC----CCCCCCCCCCCCCcEEEcCCCCccccc
Confidence            33466643 3 6677888889998888 789999999999987665432    13457899999997652          


Q ss_pred             -EEeCCCCCCC-CCCCcceEEEe-cCCcchhhcCCccccccccchhhhcccc
Q 028779          155 -IVSVDTQKPL-PPNQLGEIWLR-GPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       155 -v~d~~~~~~~-~~g~~Gel~v~-g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                       ++| ++|+++ ++++.|||+++ |+.++.|||++++.+++.|. +|||+||
T Consensus       336 ~~~d-~~g~~~~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~~-~g~~~TG  385 (540)
T PRK13388        336 ARFD-AHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERMR-HGMYWSG  385 (540)
T ss_pred             eecc-CccccccCCCcceEEEEecCCcccccccCChHHHHHHhh-cCceecc
Confidence             344 555555 44679999998 99999999999999999886 7999997

>PLN02479 acetate-CoA ligase

Probab=99.94  E-value=7.6e-26  Score=192.08  Aligned_cols=193  Identities=23%  Similarity=0.275  Sum_probs=154.7

Q ss_pred             cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCC-CC
Q 028779            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK-FD   85 (204)
Q Consensus         7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-~~   85 (204)
                      .++++.+|++++.+|++|++++...++..+..|.+++ ...+++..+++.++++++|++..+|+++..|.+...... .+
T Consensus       230 ~~~~~~~~~~~~~~p~~h~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  308 (567)
T PLN02479        230 IWGMNEGAVYLWTLPMFHCNGWCFTWTLAALCGTNIC-LRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILP  308 (567)
T ss_pred             hcCCCCCCEEEEecchhhhhhHHHHHHHHhhcCceEe-ccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhccccc
Confidence            4667889999999999999998774444566665554 467899999999999999999999999999987643332 25


Q ss_pred             CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCC---------CCCCCCCCCccccCCCce-EEE
Q 028779           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS---------FAGSRNIGSAGALAPGVE-ALI  155 (204)
Q Consensus        86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~---------~~~~~~~~~~G~p~~~~~-v~v  155 (204)
                      ++++|.++++|+++++.+.+++.+.  +.++++.||+||+++.++....         ........+.|.+.+++. +++
T Consensus       309 ~~~l~~~~~~G~~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i  386 (567)
T PLN02479        309 LPRVVHVMTAGAAPPPSVLFAMSEK--GFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDV  386 (567)
T ss_pred             ccceeEEEEcCCCCCHHHHHHHHhc--CCceecccccccccccccceeccccccccCcccccccccccCCCcCCcCceeE
Confidence            6899999999999999999999875  6899999999998654332210         000111235788888876 889


Q ss_pred             EeCCCCCCCCCC--CcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          156 VSVDTQKPLPPN--QLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       156 ~d~~~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      +|++++++++.+  +.|||+++|+.++.|||++++.|++.|. +|||+||
T Consensus       387 ~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY~~~~~~t~~~~~-~g~~~TG  435 (567)
T PLN02479        387 VDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFA-NGWFHSG  435 (567)
T ss_pred             EcCCCCcccCCCCCCceEEEEeccchhhhhhcCcccccchhc-CCceecc
Confidence            997788888764  6799999999999999999999999997 8999997

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=99.94  E-value=9.7e-26  Score=194.38  Aligned_cols=193  Identities=17%  Similarity=0.123  Sum_probs=156.9

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC----CCHHHHHHHHHhcCceEEEechHHHHHHHhCCC-
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL-   80 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~-   80 (204)
                      ..++++++|++++..++.|+...  .++.+|..|+++++.+.    .++..+++.++++++|++..+|++++.+.+... 
T Consensus       298 ~~~~~~~~d~~~~~~~~~~~~~~--~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~  375 (655)
T PRK03584        298 LHCDLGPGDRFFWYTTCGWMMWN--WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLV  375 (655)
T ss_pred             HhcCCCCCCEEEEcCCchHHhHH--HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCC
Confidence            45678899999999999998553  36689999999999752    589999999999999999999999999986532 


Q ss_pred             -CCCCCCccceeeeecCCCCCHHHHHHHHHhC-CCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeC
Q 028779           81 -VKKFDLSSLKLVGSGAAPLGKELMEECAKNV-PSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSV  158 (204)
Q Consensus        81 -~~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~-~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~  158 (204)
                       ....++++||.++++|+++++++.+++.+.+ +++.+.+.||+||++......... .....+++|.|.++++++|+| 
T Consensus       376 ~~~~~~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~-~~~~~g~~g~p~~g~~~~ivd-  453 (655)
T PRK03584        376 PGETHDLSALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCFVGGNPL-LPVYRGEIQCRGLGMAVEAWD-  453 (655)
T ss_pred             ccccCChhheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhcccccCCCC-CCcCCCccCCCcCCceeEEEC-
Confidence             2345788999999999999999999999998 468899999999986543322211 124567899999999999999 


Q ss_pred             CCCCCCCCCCcceEEEecC--CcchhhcCCccccc--ccc-c-hhhhcccc
Q 028779          159 DTQKPLPPNQLGEIWLRGP--NMMRGIMLIASIIL--SSW-G-FRKIMHSF  203 (204)
Q Consensus       159 ~~~~~~~~g~~Gel~v~g~--~~~~gY~~~~~~t~--~~~-~-~~gw~~~~  203 (204)
                      ++|+++ .|+.|||+++||  +++.|||++++.++  +.+ . .+|||+||
T Consensus       454 ~~g~~~-~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~TG  503 (655)
T PRK03584        454 EDGRPV-VGEVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWRHG  503 (655)
T ss_pred             CCCCCC-CCCceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEeecC
Confidence            788888 899999999996  79999999998654  222 1 25788886

>PRK05850 acyl-CoA synthetase; Validated

Probab=99.94  E-value=3.4e-26  Score=194.55  Aligned_cols=192  Identities=18%  Similarity=0.269  Sum_probs=149.3

Q ss_pred             CCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC----CCHHHHHHHHHhcCceEEEechHHHHH-HHhC---CCC
Q 028779           10 GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILA-LAKH---GLV   81 (204)
Q Consensus        10 ~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~-l~~~---~~~   81 (204)
                      ...+|++++++|++|.+++...++.+++.|+++++.+.    .++..+++.+++++++.. .+|+++.. +.+.   ...
T Consensus       204 ~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~~~  282 (578)
T PRK05850        204 PPPDTTVVSWLPFYHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDDDM  282 (578)
T ss_pred             CCCcceEEEECCCCCCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchhhh
Confidence            35688999999999999998878999999999999864    279999999999999855 56665443 3321   112


Q ss_pred             CCCCCccceeeeecCCCCCHHHHHHHHHhCC-----CCcEEcccccccccccccccCCCCC-------------------
Q 028779           82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVP-----SATVIQGYGLTETSGIATMENSFAG-------------------  137 (204)
Q Consensus        82 ~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~-----~~~~~~~yG~tE~~~~~~~~~~~~~-------------------  137 (204)
                      ...+++++|.++.||+++++++.+++.+.|+     +..+++.||+||++...........                   
T Consensus       283 ~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  362 (578)
T PRK05850        283 AGLDLGGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRC  362 (578)
T ss_pred             cCcchhhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEec
Confidence            2345789999999999999999999998873     3578999999998754433211100                   


Q ss_pred             ----CCCCCCccccCCCceEEEEeCCCCCCCCCCCcceEEEecCCcchhhcCCccccccccc-----------hhhhccc
Q 028779          138 ----SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWG-----------FRKIMHS  202 (204)
Q Consensus       138 ----~~~~~~~G~p~~~~~v~v~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~-----------~~gw~~~  202 (204)
                          .....++|.|. +++++++|++++++++.|+.|||+++|+.++.|||++++.|++.|.           .+|||+|
T Consensus       363 ~~~~g~~~~~~g~p~-~~~~~ivd~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~T  441 (578)
T PRK05850        363 ETGGGTPLVSYGSPR-SPTVRIVDPDTCIECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRT  441 (578)
T ss_pred             CCCCCceEEeccCCC-CCEEEEEcCCCCcCCCCCCEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeec
Confidence                00112345554 5789999988889999999999999999999999999999999885           2579999


Q ss_pred             c
Q 028779          203 F  203 (204)
Q Consensus       203 ~  203 (204)
                      |
T Consensus       442 G  442 (578)
T PRK05850        442 G  442 (578)
T ss_pred             c
Confidence            7

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.94  E-value=1.6e-25  Score=203.28  Aligned_cols=189  Identities=21%  Similarity=0.320  Sum_probs=157.8

Q ss_pred             cccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC-CCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCC
Q 028779            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (204)
Q Consensus         5 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~   83 (204)
                      ...++.+++|++++.+|++|.+++...++.++..|+++++.+. .+...+.+.++++++|++..+|++++.+.+..  ..
T Consensus       826 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~--~~  903 (1140)
T PRK06814        826 AARIDFSPEDKVFNALPVFHSFGLTGGLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYA--HP  903 (1140)
T ss_pred             HHhhCCCCcCEEEEecchHHHHHHHHHHHHHHHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhc--cc
Confidence            3456788999999999999999997768889999999998864 57788899999999999999999999987753  34


Q ss_pred             CCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCC
Q 028779           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP  163 (204)
Q Consensus        84 ~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~  163 (204)
                      .+++++|.+++||+++++++.+++++.+ +.++++.||+||++.........  ..+.+++|+|+|++++++++ .++  
T Consensus       904 ~~~~~lr~v~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~g~~~~~~~-~~~--  977 (1140)
T PRK06814        904 YDFRSLRYVFAGAEKVKEETRQTWMEKF-GIRILEGYGVTETAPVIALNTPM--HNKAGTVGRLLPGIEYRLEP-VPG--  977 (1140)
T ss_pred             ccccceeEEEEcCCcCCHHHHHHHHHHh-CCcEEeccccccccceEEecCCC--CCCCCcCCccCCCCeEEEee-cCC--
Confidence            5678999999999999999999999998 78999999999998776554322  24567899999999999987 432  


Q ss_pred             CCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          164 LPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       164 ~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                        .++.|||+++|++++.|||++++.+......+||||||
T Consensus       978 --~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TG 1015 (1140)
T PRK06814        978 --IDEGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTG 1015 (1140)
T ss_pred             --CCCceEEEEeCCCcchhhcCCCCCCccccCCCCeEecC
Confidence              36789999999999999998775443222248999997

>PLN03102 acyl-activating enzyme; Provisional

Probab=99.94  E-value=1.5e-25  Score=190.65  Aligned_cols=190  Identities=23%  Similarity=0.318  Sum_probs=151.0

Q ss_pred             ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCCc
Q 028779            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (204)
Q Consensus         8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~   87 (204)
                      +.....+++++.+|++|.+++.. .+.++..|+++++.+++++..+++.|+++++|++.++|+++..|.+.........+
T Consensus       222 ~~~~~~~~~l~~~pl~h~~g~~~-~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~  300 (579)
T PLN03102        222 WEMGTCPVYLWTLPMFHCNGWTF-TWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSPRS  300 (579)
T ss_pred             cCCCCCCeEEecCChhhhcchhH-HHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccCCcc
Confidence            44566789999999999999887 67788899999999888999999999999999999999999999886543444456


Q ss_pred             cceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCC------------CCCCCCccccCCCceEEE
Q 028779           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG------------SRNIGSAGALAPGVEALI  155 (204)
Q Consensus        88 ~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~------------~~~~~~~G~p~~~~~v~v  155 (204)
                      +++.++++|+++++.+.+++++ + +.++++.||+||+++.++.......            ....+..+.+++  .+++
T Consensus       301 ~~~~~~~gg~~~~~~~~~~~~~-~-g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~v~i  376 (579)
T PLN03102        301 GPVHVLTGGSPPPAALVKKVQR-L-GFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLA--DVDV  376 (579)
T ss_pred             cceEEEECCCCCCHHHHHHHHH-c-CCeEEeecCccccCccccccccccccccCCcccccccccCCCccccccc--ceEE
Confidence            7888999999999999999876 4 7899999999999865433211100            011222333444  4566


Q ss_pred             EeCCCCCCCCC--CCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          156 VSVDTQKPLPP--NQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       156 ~d~~~~~~~~~--g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      +|++++++++.  ++.|||+++|+.++.|||++++.+++.|. +|||+|+
T Consensus       377 ~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~-~gw~~TG  425 (579)
T PLN03102        377 KNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAFK-HGWLNTG  425 (579)
T ss_pred             eccccccccCCCCCCceEEEEECcchhhhhcCChhhhHhhhc-cCceecC
Confidence            77667777765  36899999999999999999999999997 7999997

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=99.93  E-value=2.1e-25  Score=183.45  Aligned_cols=182  Identities=25%  Similarity=0.340  Sum_probs=151.8

Q ss_pred             cccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCC
Q 028779            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (204)
Q Consensus         5 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~   84 (204)
                      ...++++++|++++.+|++|++++.. ++.++..|+++++.+.++  .+++.++++++|++.++|+++..+++....   
T Consensus       144 ~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~l~~g~~~~~~~~~~--~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~---  217 (436)
T TIGR01923       144 KENLGFTEDDNWLLSLPLYHISGLSI-LFRWLIEGATLRIVDKFN--QLLEMIANERVTHISLVPTQLNRLLDEGGH---  217 (436)
T ss_pred             HhhcCCCCCceEEEccCcHhHHHHHH-HHHHHhcCceEEecchHH--HHHHHHHHhCCeEEEeHHHHHHHHHhCcCC---
Confidence            44578899999999999999999876 889999999999987653  899999999999999999999999886532   


Q ss_pred             CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 028779           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL  164 (204)
Q Consensus        85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~  164 (204)
                       .+++|.++++|+++++++.+++++.  ++.+++.||+||++........... ....++|.|++++++++.+.+.    
T Consensus       218 -~~~l~~~~~~G~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~-~~~~~~G~~~~~~~~~i~~~~~----  289 (436)
T TIGR01923       218 -NENLRKILLGGSAIPAPLIEEAQQY--GLPIYLSYGMTETCSQVTTATPEML-HARPDVGRPLAGREIKIKVDNK----  289 (436)
T ss_pred             -CCceEEEEECCCCCCHHHHHHHHHh--CCceeeEecCCccchhccCcCcccc-ccccCCCccCCCcEEEEEeCCC----
Confidence             2689999999999999999998775  8999999999999887665433322 2223599999999999944132    


Q ss_pred             CCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          165 PPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       165 ~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                        ++.|||+++|+.++.|||++++.+...+. +|||+|+
T Consensus       290 --~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~~~~~TG  325 (436)
T TIGR01923       290 --EGHGEIMVKGANLMKGYLYQGELTPAFEQ-QGWFNTG  325 (436)
T ss_pred             --CCceEEEEECCccchhhCCChhhhhhhhc-CCCeecc
Confidence              27799999999999999998888776655 7999997

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK09192 acyl-CoA synthetase; Validated

Probab=99.93  E-value=9.3e-26  Score=191.99  Aligned_cols=195  Identities=20%  Similarity=0.262  Sum_probs=156.9

Q ss_pred             cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC----CCHHHHHHHHHhcCceEEEechHHHHHHHhCC---
Q 028779            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHG---   79 (204)
Q Consensus         7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~---   79 (204)
                      .++++++|+++.++|++|.+++...++.++..|+++++.+.    .++..+++.+.++++++++..|..+..+....   
T Consensus       212 ~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~  291 (579)
T PRK09192        212 GLKVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSK  291 (579)
T ss_pred             cccCCCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccc
Confidence            67888999999999999999998878888999999977652    37899999999999998776555454444322   


Q ss_pred             CCCCCCCccceeeeecCCCCCHHHHHHHHHhCCC-----CcEEcccccccccccccccCCCCC-----------------
Q 028779           80 LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPS-----ATVIQGYGLTETSGIATMENSFAG-----------------  137 (204)
Q Consensus        80 ~~~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~-----~~~~~~yG~tE~~~~~~~~~~~~~-----------------  137 (204)
                      .....+++++|.++++|+++++.+.+++.+.++.     ..+++.||+||++...........                 
T Consensus       292 ~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (579)
T PRK09192        292 DLAELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKA  371 (579)
T ss_pred             cccccchhhhheeEecCccCCHHHHHHHHHHHHhcCCChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCcee
Confidence            1233567899999999999999999999988732     358999999999765544322110                 


Q ss_pred             ---------CCCCCCccccCCCceEEEEeCCCCCCCCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          138 ---------SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       138 ---------~~~~~~~G~p~~~~~v~v~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                               .....++|+|+|+++++|+| ++++.++.|+.|||+++|++++.|||++ +.+.+.+..+|||+|+
T Consensus       372 ~~~~~~~~~~~~~~~vG~~~p~~~v~i~d-~~~~~~~~g~~Gel~i~g~~~~~gY~~~-~~~~~~~~~dgw~~TG  444 (579)
T PRK09192        372 VAPGAETRRVRTFVNCGKALPGHEIEIRN-EAGMPLPERVVGHICVRGPSLMSGYFRD-EESQDVLAADGWLDTG  444 (579)
T ss_pred             eccCCCCccceeEeecCCcCCCcEEEEEC-CCCCCCCCCCEEEEEecCCchhhhhcCC-ccccccccCCceeecc
Confidence                     01124789999999999999 7789999999999999999999999999 6777778779999997

>PRK07868 acyl-CoA synthetase; Validated

Probab=99.93  E-value=5.9e-25  Score=196.50  Aligned_cols=187  Identities=18%  Similarity=0.225  Sum_probs=147.5

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCC
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~   85 (204)
                      ..++++++|++++.+|++|++++...++.++..|+++++.+++++..+++.|+++++|+++++|++++.|++.+.....+
T Consensus       639 ~~~~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~~~~  718 (994)
T PRK07868        639 SAAALDRRDTVYCLTPLHHESGLLVSLGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHG  718 (994)
T ss_pred             hhcCCCCCCeEEEecChHHHhHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCccCC
Confidence            34678899999999999999999886667777777777778899999999999999999999999999999875544456


Q ss_pred             CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCc-eEEEE--eC----
Q 028779           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGV-EALIV--SV----  158 (204)
Q Consensus        86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~-~v~v~--d~----  158 (204)
                      +++||.++  |+.+++++.+++.+.|+++++++.||+||++......  .  ..+.+++|+|+|++ +++|.  |+    
T Consensus       719 ~~slr~~~--g~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~~~--~--~~~~~svG~p~pg~~~v~i~~~d~~~g~  792 (994)
T PRK07868        719 NHPVRLFI--GSGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLANV--S--GAKIGSKGRPLPGAGRVELAAYDPEHDL  792 (994)
T ss_pred             CCceEEEe--cCCCCHHHHHHHHHHhCchheeeeeeccccccccccc--C--CCCCcccCCccCCCCceeEEEecCcCCc
Confidence            77899776  3459999999999999878999999999987554321  1  23567899999997 66654  21    


Q ss_pred             ----CCC--CCCCCCCcceEEEecCCcchhhcCCccccc--cccc-hhhhcccc
Q 028779          159 ----DTQ--KPLPPNQLGEIWLRGPNMMRGIMLIASIIL--SSWG-FRKIMHSF  203 (204)
Q Consensus       159 ----~~~--~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~--~~~~-~~gw~~~~  203 (204)
                          ++|  +.++.|+.|||+++++..    ++ ++++.  ..|. .+||||||
T Consensus       793 li~d~~G~~~~~~~ge~Gel~~~~~~~----~~-p~~t~~~~~~~~~dgw~~TG  841 (994)
T PRK07868        793 ILEDDRGFVRRAEVNEVGVLLARARGP----ID-PTASVKRGVFAPADTWISTE  841 (994)
T ss_pred             eeecCCceEEEcCCCCceEEEEecCCC----CC-hhhhhHhcccccCCEEEecc
Confidence                445  567889999999999853    33 44332  2343 37999997

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=99.93  E-value=5.8e-25  Score=189.41  Aligned_cols=192  Identities=15%  Similarity=0.102  Sum_probs=151.6

Q ss_pred             cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC----CCHHHHHHHHHhcCceEEEechHHHHHHHhCC--C
Q 028779            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHG--L   80 (204)
Q Consensus         7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~   80 (204)
                      .++++++|++++..|+.|+...  .++.+|..|+++++.+.    .++..+++.++++++|++..+|++++.+.+..  .
T Consensus       300 ~~~~~~~d~~~~~~~~~~~~~~--~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~  377 (652)
T TIGR01217       300 HCDLGPGDRLFYYTTTGWMMWN--WLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHP  377 (652)
T ss_pred             ccCCCCCcEEEEeCCcchhhhH--HHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCc
Confidence            4678899999999999998542  25589999999999852    37899999999999999988888887776532  1


Q ss_pred             CCCCCCccceeeeecCCCCCHHHHHHHHHhCC-CCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCC
Q 028779           81 VKKFDLSSLKLVGSGAAPLGKELMEECAKNVP-SATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVD  159 (204)
Q Consensus        81 ~~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~  159 (204)
                      ....++++||.++++|+++++++.+++.+.++ +..+.+.||+||+++........ .....+++|.|.++++++|+| +
T Consensus       378 ~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~-~~~~~g~~g~p~~g~~v~ivd-~  455 (652)
T TIGR01217       378 ARTHDLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCFAGANPT-LPVHIGEIQAPGLGTAVQSWD-P  455 (652)
T ss_pred             cccCChhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccccCCCCC-CCCcCCccCCCcCCCceEEEC-C
Confidence            23467899999999999999999999999874 35677899999975433322111 123457889999999999999 7


Q ss_pred             CCCCCCCCCcceEEEecC--CcchhhcCCccccc--cc-cc-hhhhcccc
Q 028779          160 TQKPLPPNQLGEIWLRGP--NMMRGIMLIASIIL--SS-WG-FRKIMHSF  203 (204)
Q Consensus       160 ~~~~~~~g~~Gel~v~g~--~~~~gY~~~~~~t~--~~-~~-~~gw~~~~  203 (204)
                      +|+++ +|+.|||+++||  +++.|||++++.++  +. |. .+|||+||
T Consensus       456 ~g~~~-~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~tG  504 (652)
T TIGR01217       456 EGKPV-TGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRHG  504 (652)
T ss_pred             CCCCC-CCCccEEEEecCCCccccceeCCCccchhHHhhhcCCCCEEEcC
Confidence            88888 599999999996  68999999998664  22 22 36888876

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PLN03052 acetate--CoA ligase; Provisional

Probab=99.93  E-value=1.2e-24  Score=189.07  Aligned_cols=192  Identities=15%  Similarity=0.118  Sum_probs=155.5

Q ss_pred             ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC-CCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCC
Q 028779            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (204)
Q Consensus         8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l   86 (204)
                      ++++++|++++..|++|+++... ++++|..|+++++.++ .++..+++.++++++|++..+|++++.|.+.......++
T Consensus       392 ~~l~~~d~~~~~~~l~w~~g~~~-v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~~~dl  470 (728)
T PLN03052        392 LDIRKGDIVCWPTNLGWMMGPWL-VYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLDW  470 (728)
T ss_pred             cCCCCCcEEEECCCcHHHhHHHH-HHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCcccCCh
Confidence            57889999999999999999866 7899999999999874 567789999999999999999999999988765566788


Q ss_pred             ccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCCC
Q 028779           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP  166 (204)
Q Consensus        87 ~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~~  166 (204)
                      ++||.++++|++++++..+++.+.++..++.+.||+||+++......... ....+++|.|.++++++|+| ++|++++.
T Consensus       471 ssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~-~~~~g~~g~p~~g~~v~v~d-~~g~~v~~  548 (728)
T PLN03052        471 SSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLLQ-PQAFAAFSTPAMGCKLFILD-DSGNPYPD  548 (728)
T ss_pred             hheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccCCCCC-CCCCCccccCCCCceEEEEC-CCCCCCCC
Confidence            99999999999999999998888875568999999999976544322211 23467899999999999999 88999998


Q ss_pred             CC--cceEEEecC--CcchhhcCCccccccccc------hhhhcccc
Q 028779          167 NQ--LGEIWLRGP--NMMRGIMLIASIILSSWG------FRKIMHSF  203 (204)
Q Consensus       167 g~--~Gel~v~g~--~~~~gY~~~~~~t~~~~~------~~gw~~~~  203 (204)
                      |+  .|||+++++  +...+||+++. +..-|.      .+.|++||
T Consensus       549 g~~~~GEL~v~~~~~~~~~~~~~~~~-~~~yf~~~p~~~g~~~~~tG  594 (728)
T PLN03052        549 DAPCTGELALFPLMFGASSTLLNADH-YKVYFKGMPVFNGKILRRHG  594 (728)
T ss_pred             CCCceEEEEEeCCCCCCCccccCchh-hhhhhhcCCCCCCCEEEecC
Confidence            85  599999875  34457777643 222221      12388886

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.92  E-value=1.5e-24  Score=183.33  Aligned_cols=195  Identities=24%  Similarity=0.346  Sum_probs=154.5

Q ss_pred             cccCCCC-cEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC----CCHHHHHHHHHhcCceEEEechHHHHHHHhC---
Q 028779            7 ETAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKH---   78 (204)
Q Consensus         7 ~~~~~~~-d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~---   78 (204)
                      .+++.++ |++++++|++|..++...++.++..|+++++.+.    .++..+++.+++++++++..+|..+..+.+.   
T Consensus       187 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~  266 (545)
T PRK07768        187 AAEFDVETDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRR  266 (545)
T ss_pred             hcCCCCCCceeEEeCCCccchHHHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhc
Confidence            3556665 8999999999999998777788999999988754    2788899999999999988777777666542   


Q ss_pred             -CCCCCCCCccceeeeecCCCCCHHHHHHHHHh---C--CCCcEEcccccccccccccccCCCCC---------------
Q 028779           79 -GLVKKFDLSSLKLVGSGAAPLGKELMEECAKN---V--PSATVIQGYGLTETSGIATMENSFAG---------------  137 (204)
Q Consensus        79 -~~~~~~~l~~lr~~~~~G~~l~~~~~~~~~~~---~--~~~~~~~~yG~tE~~~~~~~~~~~~~---------------  137 (204)
                       ......+++++|.++.+|+++++++.+++.+.   +  +...+++.||+||++..+........               
T Consensus       267 ~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (545)
T PRK07768        267 QAKPGAFDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALR  346 (545)
T ss_pred             cccccCCCchheeeEEeccCCCCHHHHHHHHHHHHhcCCCcccccccccccccceEEEccCCCCCcceeeechhHhhccC
Confidence             11224667899999999999999999999874   4  22359999999999876544322110               


Q ss_pred             ---------CCCCCCccccCCCceEEEEeCCCCCCCCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          138 ---------SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       138 ---------~~~~~~~G~p~~~~~v~v~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                               .....++|+|+++++++++| ++++++++|+.|||+++|+.+++|||+++.... .+..+|||+|+
T Consensus       347 ~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~-~~~~~g~~~TG  419 (545)
T PRK07768        347 RAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQVLPPRGVGVIELRGESVTPGYLTMDGFIP-AQDADGWLDTG  419 (545)
T ss_pred             ceeccCCCCcceEEeccCCCCCCEEEEEC-CCCCCCCCCCEEEEEEccCcccccccCCCCCcc-cccCCCeeecc
Confidence                     11345799999999999999 888999999999999999999999998654443 34447999997

>PRK08162 acyl-CoA synthetase; Validated

Probab=99.92  E-value=3.8e-24  Score=180.78  Aligned_cols=193  Identities=21%  Similarity=0.249  Sum_probs=152.0

Q ss_pred             cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCC
Q 028779            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (204)
Q Consensus         7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l   86 (204)
                      .+.+..+|++++.+|++|.+++...++..+ .|++.++...+++..+++.++++++|++.++|+++..|++........+
T Consensus       217 ~~~~~~~~~~l~~~pl~h~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  295 (545)
T PRK08162        217 AWGMPKHPVYLWTLPMFHCNGWCFPWTVAA-RAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRAGI  295 (545)
T ss_pred             hcCCCCCCeeEeccCcHhhhhHHHHHHHHH-HccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccccCC
Confidence            456778899999999999999877444444 5666666677899999999999999999999999999998755444455


Q ss_pred             ccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCC---------CCCCCCCccccCCC-ceEEEE
Q 028779           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA---------GSRNIGSAGALAPG-VEALIV  156 (204)
Q Consensus        87 ~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~---------~~~~~~~~G~p~~~-~~v~v~  156 (204)
                      .+.+.++++|+++++++.+++++.  ++++++.||+||+++.+.......         ......+.|.+.+. ..++++
T Consensus       296 ~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~  373 (545)
T PRK08162        296 DHPVHAMVAGAAPPAAVIAKMEEI--GFDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVL  373 (545)
T ss_pred             ccceEEEECCCCCCHHHHHHHHHh--CCceeecccccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEE
Confidence            667778899999999999998875  789999999999865443321110         01123456776653 358889


Q ss_pred             eCCCCCCCCC-C-CcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          157 SVDTQKPLPP-N-QLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       157 d~~~~~~~~~-g-~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      |++++++++. | +.|||+++|+.++.|||++++.+.+.|. +|||+||
T Consensus       374 d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~~~~~~~~~-~g~~~TG  421 (545)
T PRK08162        374 DPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAFA-GGWFHTG  421 (545)
T ss_pred             cCCCCcccCCCCCceeEEEEecCcchhhhcCChhhhHHHhh-CCCcccC
Confidence            9778888876 3 4699999999999999999999999887 7999997

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=99.92  E-value=1.6e-24  Score=179.32  Aligned_cols=174  Identities=20%  Similarity=0.218  Sum_probs=136.0

Q ss_pred             ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCCc
Q 028779            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (204)
Q Consensus         8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~   87 (204)
                      +++.+ ++.++++|++|.+|+.. ++.++..|+++++.+..+.........++++++++++|++++.+++.   ....++
T Consensus       156 ~~~~~-~~~~~~~Pl~h~~g~~~-~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t~~~~vP~~l~~l~~~---~~~~l~  230 (452)
T PRK07445        156 FQLQQ-VNSFCVLPLYHVSGLMQ-FMRSFLTGGKLVILPYKRLKSGQELPPNPSDFFLSLVPTQLQRLLQL---RPQWLA  230 (452)
T ss_pred             hcCCC-CceEeccCchhhhhHHH-HHHHHHcCCeEEEcChHhccchhhhhhhcCceEEEehHHHHHHHHhh---Chhhhh
Confidence            44544 46789999999999976 78899999999998743222223344578999999999999999863   234578


Q ss_pred             cceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCC
Q 028779           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN  167 (204)
Q Consensus        88 ~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~~g  167 (204)
                      ++|.+++||+++++++.+++.+.  ++++++.||+||++.......+.+......++|+|+|+++++|+         .|
T Consensus       231 ~l~~i~~gG~~l~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~---------~g  299 (452)
T PRK07445        231 QFRTILLGGAPAWPSLLEQARQL--QLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIP---------AN  299 (452)
T ss_pred             cceEEEECCccCCHHHHHHHHhc--CCeEecCcchhhhcccccccCchhhccCCCcCCccCCCCeEEEc---------CC
Confidence            99999999999999999988763  78999999999997655433222212345689999999999997         36


Q ss_pred             CcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          168 QLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       168 ~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      +.|||+++|++++.|||+++.      ..+|||+|+
T Consensus       300 ~~Gel~v~g~~~~~gY~~~~~------~~~g~~~TG  329 (452)
T PRK07445        300 QTGNITIQAQSLALGYYPQIL------DSQGIFETD  329 (452)
T ss_pred             CcceEEEeCCccchhhcCCcc------CCCCEEECC
Confidence            779999999999999998543      237899997

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=99.92  E-value=5.5e-24  Score=181.84  Aligned_cols=191  Identities=16%  Similarity=0.125  Sum_probs=151.6

Q ss_pred             cccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCC
Q 028779            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (204)
Q Consensus         5 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~   84 (204)
                      ...++++++|++++.+|++|.+++...+++++..|+++++.+.+++..+++.++++++|++.++|++++.+++.......
T Consensus       232 ~~~~~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~~  311 (600)
T PRK08279        232 GGLLRLTPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTD  311 (600)
T ss_pred             HHhcCCCCCcEEEEecCchhhhhHHHHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCccc
Confidence            34478899999999999999999998788889999999999999999999999999999999999999999887554444


Q ss_pred             CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCC----CceEEEEeC--
Q 028779           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAP----GVEALIVSV--  158 (204)
Q Consensus        85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~----~~~v~v~d~--  158 (204)
                      ...++|.+  +|+.+++++++++.+.|+...+++.||+||++......     ....+++|.+.+    +..+...|+  
T Consensus       312 ~~~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~~~~  384 (600)
T PRK08279        312 RDHRLRLM--IGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFINV-----FNFDGTVGRVPLWLAHPYAIVKYDVDT  384 (600)
T ss_pred             cCcceeEE--ecCCCCHHHHHHHHHHhCcceeeeeecccccceeeccc-----CCCCcccccccccccccceeeeeccCc
Confidence            55677764  47789999999999999766799999999987543321     123456776655    333322222  


Q ss_pred             ------CCC--CCCCCCCcceEE--EecCCcchhhcCCccccccccc------hhhhcccc
Q 028779          159 ------DTQ--KPLPPNQLGEIW--LRGPNMMRGIMLIASIILSSWG------FRKIMHSF  203 (204)
Q Consensus       159 ------~~~--~~~~~g~~Gel~--v~g~~~~~gY~~~~~~t~~~~~------~~gw~~~~  203 (204)
                            .++  .++++|+.|||+  ++++.++.|| ++++.+++.|.      .++||+||
T Consensus       385 ~~~i~~~~~~~~~~~~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~~~~~~~~~~TG  444 (600)
T PRK08279        385 GEPVRDADGRCIKVKPGEVGLLIGRITDRGPFDGY-TDPEASEKKILRDVFKKGDAWFNTG  444 (600)
T ss_pred             CceeeCCCCccccCCCCCceeEEEEecCccccccc-CCchhhHHHHhhcccCCCCceEeec
Confidence                  222  357889999998  7899999999 88888887763      35899997

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=99.92  E-value=3.8e-25  Score=178.36  Aligned_cols=191  Identities=22%  Similarity=0.236  Sum_probs=155.4

Q ss_pred             cCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCC--------HHHHHHHHHhcCceEEEechHHHHHHHhCC-
Q 028779            9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFD--------LEMFLRAIEKHRVTHIWVVPPLILALAKHG-   79 (204)
Q Consensus         9 ~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~--------~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~-   79 (204)
                      .+.+.|+++..+||.|++.+.. -+.+++-|+++=..+..+        ...--..+...++|++.++|..+.+.-+.- 
T Consensus       275 ~lg~~D~yi~yLPLAHIlEl~a-E~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl  353 (678)
T KOG1180|consen  275 ELGPKDRYIAYLPLAHILELTA-ELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVL  353 (678)
T ss_pred             ccCCCceEEEechHHHHHHHHH-HHHHHhhCCEeecCCcceecccchhhccCCcCccccccchhhhhhHHHHHHHHHHHH
Confidence            6788999999999999999999 678899999988775421        111123456788999999999887764320 


Q ss_pred             ----C-------------------C--CC----------------CCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEc
Q 028779           80 ----L-------------------V--KK----------------FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ  118 (204)
Q Consensus        80 ----~-------------------~--~~----------------~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~  118 (204)
                          .                   .  ..                ..--+||.+++||+|++++..+++.-.+ .+++.+
T Consensus       354 ~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lGG~lR~~LsGGapLS~dtQrF~nic~-C~Pv~q  432 (678)
T KOG1180|consen  354 SKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLGGNLRYILSGGAPLSPDTQRFMNICF-CCPVLQ  432 (678)
T ss_pred             HHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHhc-cccccc
Confidence                0                   0  00                0013899999999999999999999988 679999


Q ss_pred             ccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCCC--cceEEEecCCcchhhcCCccccccccch
Q 028779          119 GYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQ--LGEIWLRGPNMMRGIMLIASIILSSWGF  196 (204)
Q Consensus       119 ~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~~g~--~Gel~v~g~~~~~gY~~~~~~t~~~~~~  196 (204)
                      .||.||+++.++...+.+  ...+.+|.|++.++++++|-+.+.-...+.  .|||+++|+.+..||++++++|++.|..
T Consensus       433 GYGLTEtca~~tv~e~~d--~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~PPrGEI~i~G~~vt~gY~kn~ekT~e~ft~  510 (678)
T KOG1180|consen  433 GYGLTETCAAATVLEPED--FSTGRVGAPLPCCEIKLVDWEEGGYFAKNKPPRGEILIGGPNVTMGYYKNEEKTKEDFTV  510 (678)
T ss_pred             cccccchhcccEecChhh--cccccccCCccceEEEEEEhhhcCccCCCCCCCceEEecCCccChhhhCChhhhhhhcee
Confidence            999999998888776655  566799999999999999977776555555  7999999999999999999999999996


Q ss_pred             -hh--hcccc
Q 028779          197 -RK--IMHSF  203 (204)
Q Consensus       197 -~g--w~~~~  203 (204)
                       +|  ||+||
T Consensus       511 ~~G~~WF~TG  520 (678)
T KOG1180|consen  511 EDGQRWFRTG  520 (678)
T ss_pred             cCCcEEEecc
Confidence             99  99997

>PRK07798 acyl-CoA synthetase; Validated

Probab=99.92  E-value=2.4e-23  Score=175.02  Aligned_cols=186  Identities=20%  Similarity=0.230  Sum_probs=152.5

Q ss_pred             CCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC--CCCHHHHHHHHHhcCceEEEechHHHH-HHHhCCC-CCCCCC
Q 028779           11 ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLIL-ALAKHGL-VKKFDL   86 (204)
Q Consensus        11 ~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~p~~~~-~l~~~~~-~~~~~l   86 (204)
                      ..+++++..+|++|.+++.. ++.+++.|+++++.+  .+++..+++.++++++|.+.++|..+. .+.+... ....++
T Consensus       217 ~~~~~~~~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~  295 (533)
T PRK07798        217 GPGMRRFPAPPLMHGAGQWA-AFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYDL  295 (533)
T ss_pred             CCCceEEEecchhhhhhHHH-HHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcccccCCC
Confidence            57799999999999999986 889999999999998  789999999999999999999987654 3333322 234567


Q ss_pred             ccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCcc--ccCCCceEEEEeCCCCCCC
Q 028779           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAG--ALAPGVEALIVSVDTQKPL  164 (204)
Q Consensus        87 ~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G--~p~~~~~v~v~d~~~~~~~  164 (204)
                      +++|.++++|+++++++.+++++.+++..+++.||+||++........    ......|  ++.++..++++| ++++++
T Consensus       296 ~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~----~~~~~~g~~~~~~~~~~~i~~-~~~~~~  370 (533)
T PRK07798        296 SSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTVA----KGAVHTGGPRFTIGPRTVVLD-EDGNPV  370 (533)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccccccCCC----CCCccCCCCccCCCceEEEEC-CCCCCC
Confidence            899999999999999999999999988999999999999765544321    1122334  788999999999 778899


Q ss_pred             CCCCc--ceEEEecCCcchhhcCCccccccccch---hhhcccc
Q 028779          165 PPNQL--GEIWLRGPNMMRGIMLIASIILSSWGF---RKIMHSF  203 (204)
Q Consensus       165 ~~g~~--Gel~v~g~~~~~gY~~~~~~t~~~~~~---~gw~~~~  203 (204)
                      ++|+.  |+++ +++.++.|||++++.+++.|..   ++|++||
T Consensus       371 ~~g~~~~g~l~-~~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TG  413 (533)
T PRK07798        371 EPGSGEIGWIA-RRGHIPLGYYKDPEKTAETFPTIDGVRYAIPG  413 (533)
T ss_pred             CCCCCCeeEEE-eecCccccccCChhhhHHhhccCCCCceEEcC
Confidence            99987  6665 5668999999999999888752   4699987

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=99.91  E-value=5.4e-24  Score=177.30  Aligned_cols=199  Identities=25%  Similarity=0.345  Sum_probs=170.7

Q ss_pred             ccccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC--CCCHHHHHHHHHhcCceEEEechHHHHHHHhCCC-
Q 028779            4 MDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL-   80 (204)
Q Consensus         4 ~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~-   80 (204)
                      ....++++++|++.+...+.|+.+.....+.+|++|+|+++.+  ++++..+++.+.+|++|+++..|+.++.|.+... 
T Consensus       272 ~~~~~d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~  351 (626)
T KOG1175|consen  272 SRYHFDLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQE  351 (626)
T ss_pred             cceeccCCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccc
Confidence            3556889999999999999999999998999999999999985  3599999999999999999999999998876543 


Q ss_pred             -CCCCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCC
Q 028779           81 -VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVD  159 (204)
Q Consensus        81 -~~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~  159 (204)
                       ....++++||.+.++||++.++..+++.+.+...++++.||+||+|..++.........++++.+.|.+++.+.|.| +
T Consensus       352 ~~~~~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qtEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~d-e  430 (626)
T KOG1175|consen  352 DVTSYSLKSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQTETGGICITPKPGKLPIKPGSAGKPFPGYDVQILD-E  430 (626)
T ss_pred             cccccccceEEEEeecCccCCcchHHHHHHhcCccchhhceeeeccCceeeeccCCCCCcCccccCCCCCCcceEEEC-C
Confidence             33344467999999999999999999999995557999999999999988876665457889999999999999999 7


Q ss_pred             CCCCCCCC-CcceEEEec--C-CcchhhcCCccccccccc--hhhhcccc
Q 028779          160 TQKPLPPN-QLGEIWLRG--P-NMMRGIMLIASIILSSWG--FRKIMHSF  203 (204)
Q Consensus       160 ~~~~~~~g-~~Gel~v~g--~-~~~~gY~~~~~~t~~~~~--~~gw~~~~  203 (204)
                      +|++++.+ +.|+|+++.  | +++++||+|++....+..  +.|++.||
T Consensus       431 ~g~~~~~~~~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~pg~y~tG  480 (626)
T KOG1175|consen  431 NGNELPPSTGNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFPGYYFTG  480 (626)
T ss_pred             CCCCcCCCCceeEEEEeCCCCccccccccCCHHHhhhhhcccCCceEEec
Confidence            99998876 899999998  4 889999999994444322  35666665

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.90  E-value=8.9e-23  Score=169.11  Aligned_cols=170  Identities=26%  Similarity=0.357  Sum_probs=141.4

Q ss_pred             cccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCC
Q 028779            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (204)
Q Consensus         5 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~   84 (204)
                      ...++..++|+++..+|++|.+++.. ++.+|..|+++++.+.   ..+++.+  .++|.+..+|+++..++.....   
T Consensus       168 ~~~~~~~~~~~~l~~~p~~h~~g~~~-~~~~l~~G~~v~~~~~---~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~---  238 (458)
T PRK09029        168 LSLMPFTAQDSWLLSLPLFHVSGQGI-VWRWLYAGATLVVRDK---QPLEQAL--AGCTHASLVPTQLWRLLDNRSE---  238 (458)
T ss_pred             hhcCCCCccceEEEecCcHhhhhhHH-HHHHHhCCceEEeCCh---HHHHHHH--hhceeeecChHHHHHHHhcccc---
Confidence            34567888999999999999999876 7788999999998775   4566666  3789999999999999876432   


Q ss_pred             CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 028779           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL  164 (204)
Q Consensus        85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~  164 (204)
                       ..++|.+++||+++++.+.+++.+.  +.++++.||+||++........    ....++|+|+++++++++|       
T Consensus       239 -~~~l~~i~~gG~~~~~~~~~~~~~~--g~~~~~~YG~tE~~~~~~~~~~----~~~~~~G~~~~~~~~~i~~-------  304 (458)
T PRK09029        239 -PLSLKAVLLGGAAIPVELTEQAEQQ--GIRCWCGYGLTEMASTVCAKRA----DGLAGVGSPLPGREVKLVD-------  304 (458)
T ss_pred             -CCcceEEEECCCCCCHHHHHHHHHc--CCcEeccccccccCcceeccCC----CCCCCCCCCCCCCEEEEeC-------
Confidence             3479999999999999999999764  7899999999999876544322    2235699999999999987       


Q ss_pred             CCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          165 PPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       165 ~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                           |||+++|+.++.|||++++.+..... +|||+|+
T Consensus       305 -----gel~v~g~~~~~gY~~~~~~~~~~~~-~~~~~TG  337 (458)
T PRK09029        305 -----GEIWLRGASLALGYWRQGQLVPLVND-EGWFATR  337 (458)
T ss_pred             -----CEEEEecCceeeeeecCccccccccC-CCccCCC
Confidence                 89999999999999999988765544 7999997

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.88  E-value=1.4e-21  Score=157.21  Aligned_cols=162  Identities=23%  Similarity=0.281  Sum_probs=134.8

Q ss_pred             CCcEEEEecchhhHHHHHHHHHhHhccCcEEEEc---CCCCHHHHHHHHHhcC--ceEEEechHHHHHHHhCCCCCCCCC
Q 028779           12 LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM---AKFDLEMFLRAIEKHR--VTHIWVVPPLILALAKHGLVKKFDL   86 (204)
Q Consensus        12 ~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~---~~~~~~~~~~~i~~~~--~t~~~~~p~~~~~l~~~~~~~~~~l   86 (204)
                      ..++++..+|++|++++.. ++.++..|+++++.   ..+++..+++.+++++  .++...+|..+..++..+. ...++
T Consensus        73 ~~~~~~~~~p~~~~~g~~~-~~~~l~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~-~~~~~  150 (358)
T PRK07824         73 GPGQWLLALPAHHIAGLQV-LVRSVIAGSEPVELDVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPA-ATAAL  150 (358)
T ss_pred             CCCeEEEECChHHHHHHHH-HHHHHHcCCeEEecCcCCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCcc-ccCCc
Confidence            4578999999999999887 77889999998873   4579999999999998  5666778888887776543 23467


Q ss_pred             ccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCCC
Q 028779           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP  166 (204)
Q Consensus        87 ~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~~  166 (204)
                      +++|.++++|+++++++.+++.+.  ++++++.||+||++..+.            ..|.|++++++++.|         
T Consensus       151 ~~l~~i~~gG~~l~~~~~~~~~~~--~~~v~~~YG~TE~~~~~~------------~~G~~~~g~~v~i~~---------  207 (358)
T PRK07824        151 AELDAVLVGGGPAPAPVLDAAAAA--GINVVRTYGMSETSGGCV------------YDGVPLDGVRVRVED---------  207 (358)
T ss_pred             ccceEEEECCCCCCHHHHHHHHhc--CCcEEecccCCccCCCcC------------cCceeCCCCEEEecC---------
Confidence            899999999999999999999864  789999999999865422            258899999999954         


Q ss_pred             CCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          167 NQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       167 g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                         |||+++|+.++.|||++++.+  .|..+|||+|+
T Consensus       208 ---Gei~v~g~~~~~gY~~~~~~~--~~~~~g~~~TG  239 (358)
T PRK07824        208 ---GRIALGGPTLAKGYRNPVDPD--PFAEPGWFRTD  239 (358)
T ss_pred             ---CEEEEecCccccccCCCcccc--cccCCCceecc
Confidence               999999999999999988754  45567899997

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=99.87  E-value=2.7e-21  Score=156.66  Aligned_cols=197  Identities=18%  Similarity=0.115  Sum_probs=157.5

Q ss_pred             cccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCC
Q 028779            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (204)
Q Consensus         5 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~   84 (204)
                      ...++++++|+++.++|++|+++.+..+.+++..|+|+++..+|+.+++|+...+|++|++...-.+.+.|++++..+.+
T Consensus       275 ~~~~g~~~~DvvY~~lPLYHsaa~ilGi~~~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~e  354 (649)
T KOG1179|consen  275 YYVFGMTADDVVYTTLPLYHSAAGILGIGGCLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEE  354 (649)
T ss_pred             HHHhCCCccceEEEcchhHHHHHHHHHHHHHHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhh
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCC-CCccccCCCceEEEEeCCCCC-
Q 028779           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNI-GSAGALAPGVEALIVSVDTQK-  162 (204)
Q Consensus        85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~-~~~G~p~~~~~v~v~d~~~~~-  162 (204)
                      +-..+|.++  |..+.+++++.+.++|+..++.+.||+||......+.+..-..-.. ....+-+.-+++--+|+++++ 
T Consensus       355 r~HkVRla~--GNGLR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~N~d~~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~  432 (649)
T KOG1179|consen  355 RQHKVRLAY--GNGLRPDIWQQFVKRFGIIKIGEFYGATEGNSNLVNYDGRVGACGFMSRLLKLLYPFRLIKVDPETGEP  432 (649)
T ss_pred             cCceEEEEe--cCCCCchHHHHHHHHcCCCeEEEEeccccCcceeeeecCccccccchhhhhhhccceEEEEecCCCCce
Confidence            778898877  7789999999999999778899999999976655443221111111 112223344555556878887 


Q ss_pred             ---------CCCCCCcceEEEe--cCCc---chhhcCCccccccccc------hhhhcccc
Q 028779          163 ---------PLPPNQLGEIWLR--GPNM---MRGIMLIASIILSSWG------FRKIMHSF  203 (204)
Q Consensus       163 ---------~~~~g~~Gel~v~--g~~~---~~gY~~~~~~t~~~~~------~~gw~~~~  203 (204)
                               +|++||+|.++-+  ...-   +.||.+++++|+++..      .|-||+||
T Consensus       433 iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tG  493 (649)
T KOG1179|consen  433 IRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDVFKKGDVYFNTG  493 (649)
T ss_pred             eecCCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHhhhccCcEEEeeC
Confidence                     4689999987633  3334   8899998888887743      34577776

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.86  E-value=6.3e-21  Score=156.71  Aligned_cols=164  Identities=18%  Similarity=0.165  Sum_probs=126.6

Q ss_pred             ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCC--C
Q 028779            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF--D   85 (204)
Q Consensus         8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~--~   85 (204)
                      ++.+++|++++..++.+..+.....+.++..|++++..+..++..+++.|+++++|++.++|+++..|++.......  .
T Consensus       114 ~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~  193 (422)
T TIGR02155       114 AGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPA  193 (422)
T ss_pred             cCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcc
Confidence            57889999998877665444443356678889999988777889999999999999999999999998865332222  2


Q ss_pred             CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccC--CCceEEEEeCCCCCC
Q 028779           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALA--PGVEALIVSVDTQKP  163 (204)
Q Consensus        86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~--~~~~v~v~d~~~~~~  163 (204)
                      ..++|.++++||++++++.+.+++.| ++++++.||+||+++.........     ...|.++  +.+.++|+|++++++
T Consensus       194 ~~~lr~i~~~ge~l~~~~~~~i~~~~-g~~v~~~YG~tE~~~~~~~~~~~~-----~~~g~~~~~~~~~~eivd~~~g~~  267 (422)
T TIGR02155       194 QTSLQVGIFGAEPWTNAMRKEIEARL-GMKATDIYGLSEVIGPGVAMECVE-----TQDGLHIWEDHFYPEIIDPHTGEV  267 (422)
T ss_pred             cCceEEEEEeCCcCCHHHHHHHHHHh-CCceEecccchhhcCCceeecccc-----cCCCceEecCeeEEEEECCCCCCC
Confidence            35899999999999999999999999 689999999999853211111000     1123333  357788999889999


Q ss_pred             CCCCCcceEEEecC
Q 028779          164 LPPNQLGEIWLRGP  177 (204)
Q Consensus       164 ~~~g~~Gel~v~g~  177 (204)
                      +++|+.|||++++.
T Consensus       268 v~~Ge~Gelvvt~~  281 (422)
T TIGR02155       268 LPDGEEGELVFTTL  281 (422)
T ss_pred             CCCCCeeEEEEecC
Confidence            99999999999974

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>PRK08308 acyl-CoA synthetase; Validated

Probab=99.86  E-value=2.6e-20  Score=152.63  Aligned_cols=155  Identities=18%  Similarity=0.227  Sum_probs=131.8

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCC
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~   85 (204)
                      ..++...+|+++..+|++|++++...++.++..|+++++.+..++..+++.++++++|.++++|+++..+.+....    
T Consensus       135 ~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~----  210 (414)
T PRK08308        135 EALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTPQHILYAVPLMLHILGRLLPG----  210 (414)
T ss_pred             HhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhCCeEEEcCHHHHHHHHhcCCc----
Confidence            4567788999999999999999987789999999999999989999999999999999999999999999876432    


Q ss_pred             CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCC
Q 028779           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  165 (204)
Q Consensus        86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~  165 (204)
                      ..++|.++.+|+++++++.+++++.  ..++++.||+||++.++....    .....++|+|+|++++++.+ +      
T Consensus       211 ~~~l~~~~~~G~~l~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~----~~~~~~~G~p~~~~~~~~~~-~------  277 (414)
T PRK08308        211 TFQFHAVMTSGTPLPEAWFYKLRER--TTYMMQQYGCSEAGCVSICPD----MKSHLDLGNPLPHVSVSAGS-D------  277 (414)
T ss_pred             cccccEEEEccCCCCHHHHHHHHHh--CChhhhccCccccCCeeecCC----CCCCCccCccCCCeEEEEec-C------
Confidence            1368899999999999999999987  468999999999987554321    23456899999999999876 3      


Q ss_pred             CCCcceEEEecC
Q 028779          166 PNQLGEIWLRGP  177 (204)
Q Consensus       166 ~g~~Gel~v~g~  177 (204)
                      +++.|||++++.
T Consensus       278 ~~~~gel~v~~~  289 (414)
T PRK08308        278 ENAPEEIVVKMG  289 (414)
T ss_pred             CCCCceEEEEcC
Confidence            356799999864

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.84  E-value=1e-19  Score=156.74  Aligned_cols=196  Identities=18%  Similarity=0.202  Sum_probs=164.7

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC---CCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCC
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK   82 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~   82 (204)
                      ..+..+.+|+++...++.+...... ++.++..|+++++.+.   .++..+.+.+.++++|++..+|.++..++......
T Consensus       400 ~~~~~~~~d~~l~~~s~~fD~~~~~-~f~~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~  478 (642)
T COG1020         400 ARFGLDADDRVLALASLSFDASVFE-IFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAP  478 (642)
T ss_pred             HhcCCCcccEEeecCCcccchhHHH-HHHHHhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhc
Confidence            4488899999999999998888888 8999999999999974   58999999999999999999999999998763222


Q ss_pred             C--CCCccceeeeecCCCCCHHHHHHHHHhCC-CCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCC
Q 028779           83 K--FDLSSLKLVGSGAAPLGKELMEECAKNVP-SATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVD  159 (204)
Q Consensus        83 ~--~~l~~lr~~~~~G~~l~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~  159 (204)
                      .  .....+|.++++|+.++..+.+++....+ ...+.+.||+||+...+.............++|+|+++.++.|+| +
T Consensus       479 ~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~~~~piG~p~~n~~~~ild-~  557 (642)
T COG1020         479 DLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILD-Q  557 (642)
T ss_pred             cccCCcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEcccccCCCCCcceeeCCCeEEEEC-C
Confidence            2  22235999999999999999999988765 578999999999655554433222212256899999999999999 9


Q ss_pred             CCCCCCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          160 TQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       160 ~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      .+++++.|..||+++.|.++.+||+++++.|.+.|..+.+++|+
T Consensus       558 ~~~~~p~gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tg  601 (642)
T COG1020         558 GLRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTG  601 (642)
T ss_pred             CCCcCCCCCCeeeEECCcchhhhhcCChhhhHHHhhhccCccCC
Confidence            99999999999999999999999999999999999843377776

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.78  E-value=6.9e-18  Score=139.53  Aligned_cols=159  Identities=21%  Similarity=0.121  Sum_probs=123.8

Q ss_pred             ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCC--C
Q 028779            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF--D   85 (204)
Q Consensus         8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~--~   85 (204)
                      .+++++|+++...|+.+..+.....++++..|++++....  ....++.|++++++.+.++|+.+..|++.......  .
T Consensus       125 ~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~--~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~  202 (445)
T TIGR03335       125 QGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK--CTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPA  202 (445)
T ss_pred             cCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc--hhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcc
Confidence            4788999999999998877765546677888998765443  34668999999999999999998887754322221  2


Q ss_pred             CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccC--CCceEEEEeCCCCCC
Q 028779           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALA--PGVEALIVSVDTQKP  163 (204)
Q Consensus        86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~--~~~~v~v~d~~~~~~  163 (204)
                      ..++|.++++||++++++.+++++.| ++++++.||+||++. +..+..        ..|..+  +.+.++|+||+++++
T Consensus       203 ~~~lr~ii~gGE~l~~~~r~~ie~~~-g~~v~~~YG~TE~~~-~~~c~~--------~~g~h~~~d~~~vEIvDp~~~~~  272 (445)
T TIGR03335       203 ESSIRRLVVGGESFADESRNYVEELW-GCEVYNTYGSTEGTM-CGECQA--------VAGLHVPEDLVHLDVYDPRHQRF  272 (445)
T ss_pred             cCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEecCChhhhhh-eEEecC--------CCCccccCCceEEEEEcCCCCCC
Confidence            36899999999999999999999988 799999999999852 222111        123333  457899999888899


Q ss_pred             CCCCCcceEEEecCC
Q 028779          164 LPPNQLGEIWLRGPN  178 (204)
Q Consensus       164 ~~~g~~Gel~v~g~~  178 (204)
                      +++|+.|||++++-.
T Consensus       273 vp~Ge~GELvvT~L~  287 (445)
T TIGR03335       273 LPDGECGRIVLTTLL  287 (445)
T ss_pred             CcCCCceEEEEEecC
Confidence            999999999999853

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.63  E-value=6.3e-15  Score=118.68  Aligned_cols=162  Identities=20%  Similarity=0.140  Sum_probs=127.4

Q ss_pred             ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCC--CC
Q 028779            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK--FD   85 (204)
Q Consensus         8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~--~~   85 (204)
                      .+...+|++..+..+....|-....+++-..|++++-...-+.+.-++.|.++++|++.++|+.+..|++......  ..
T Consensus       129 ~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~  208 (438)
T COG1541         129 AGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPD  208 (438)
T ss_pred             ccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChh
Confidence            5677889888887744444433335566667888887777788999999999999999999999999988755442  33


Q ss_pred             CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccc-cccCCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 028779           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIA-TMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL  164 (204)
Q Consensus        86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~-~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~  164 (204)
                      -.+||.+++|+|+++++..+.+.+.| +++.++.||.||..+.. ..+.     ... -.-..-....++++||++++.+
T Consensus       209 ~~~lk~~i~gaE~~see~R~~ie~~~-g~~~~diYGltE~~g~g~~eC~-----~~~-glhi~eD~~~~Ei~dP~t~e~l  281 (438)
T COG1541         209 KLSLKKGIFGAEPWSEEMRKVIENRF-GCKAFDIYGLTEGFGPGAGECT-----ERN-GLHIWEDHFIFEIVDPETGEQL  281 (438)
T ss_pred             hcceeEEEEecccCCHHHHHHHHHHh-CCceeeccccccccCCcccccc-----ccc-CCCcchhhceeeeecCCcCccC
Confidence            35899999999999999999999999 89999999999987664 1111     111 1112236688999999999999


Q ss_pred             CCCCcceEEEec
Q 028779          165 PPNQLGEIWLRG  176 (204)
Q Consensus       165 ~~g~~Gel~v~g  176 (204)
                      ++|+.|||+++.
T Consensus       282 ~dge~GelV~T~  293 (438)
T COG1541         282 PDGERGELVITT  293 (438)
T ss_pred             CCCCeeEEEEEe
Confidence            999999999987

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.62  E-value=6.2e-15  Score=119.72  Aligned_cols=134  Identities=19%  Similarity=0.151  Sum_probs=105.5

Q ss_pred             cccCC--CCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCC
Q 028779            7 ETAGE--LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (204)
Q Consensus         7 ~~~~~--~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~   84 (204)
                      .++++  +.|++++++|++|++++...++.++..|+++++.+++++..+++.++.+  +++.++|++++.|.+..    .
T Consensus       130 ~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~----~  203 (386)
T TIGR02372       130 ILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAAPASGIMRHARPG--DLIVGTPFIWEQLADLD----Y  203 (386)
T ss_pred             HhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCCChHHHHHhhccC--CEEEECcHHHHHHHhhC----c
Confidence            34443  3468999999999999877678889999999999889999888888654  78899999999998753    3


Q ss_pred             CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEE
Q 028779           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALI  155 (204)
Q Consensus        85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v  155 (204)
                      +++++|. +++|+++++++.+++++. +..++++.||+||++++.....       ....|.++|++++++
T Consensus       204 ~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~~~~-------~~~~~~~~p~~~~~~  265 (386)
T TIGR02372       204 RLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGLREA-------PDDPFRLLPDLACFA  265 (386)
T ss_pred             CCCccee-EecCCCCCHHHHHHHHHh-cccchhheeccccccccccccC-------CCCCcccCCCccccC
Confidence            4667875 678999999999999886 3357899999999987654321       234567888877654

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>PTZ00297 pantothenate kinase; Provisional

Probab=99.50  E-value=1.5e-13  Score=125.61  Aligned_cols=165  Identities=15%  Similarity=0.092  Sum_probs=115.9

Q ss_pred             cCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCC----CC---
Q 028779            9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHG----LV---   81 (204)
Q Consensus         9 ~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~----~~---   81 (204)
                      ...++|++++.+|++|+++... .+.++..|+++..   +++..+++.|+++++|++.++|.++..+.+.-    ..   
T Consensus       641 ~~~~~D~~Ls~LPLaHI~er~~-~~~~l~~G~~I~~---~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~  716 (1452)
T PTZ00297        641 SSFKKHLMVHFTPFAMLFNRVF-VLGLFAHGSAVAT---VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSA  716 (1452)
T ss_pred             CCCCCCEEEEechHHHHHHHHH-HHHHHHcCCEEEe---CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhH
Confidence            3467899999999999999655 7788999999864   57899999999999999999999988764321    00   


Q ss_pred             -------------------CCCCC----------------ccceeeeecCC--CCCHHHHHHHHHhCCCCcEEccccccc
Q 028779           82 -------------------KKFDL----------------SSLKLVGSGAA--PLGKELMEECAKNVPSATVIQGYGLTE  124 (204)
Q Consensus        82 -------------------~~~~l----------------~~lr~~~~~G~--~l~~~~~~~~~~~~~~~~~~~~yG~tE  124 (204)
                                         .+...                .++|.+++||.  +++..+..       ..++...||+||
T Consensus       717 ~~~~lf~~A~~~k~~~~~~g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~~-------~i~i~~g~glTE  789 (1452)
T PTZ00297        717 VYSWLFERAFQLRSRLINIHRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLE-------HISVCYVPCLRE  789 (1452)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHhC-------CceEEEecceEE
Confidence                               00000                36888888763  44433322       356788999999


Q ss_pred             ccccccccCCCCCCCCCCCccccCCCceEEEEeC-CCCCCCCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779          125 TSGIATMENSFAGSRNIGSAGALAPGVEALIVSV-DTQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~-~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~  203 (204)
                      +.   +......  .  ...|.|+|++++++.|. +.+..   +..|||+++       |+++|++|++.+  +||++.|
T Consensus       790 ~~---~~~~~~~--~--~~~G~PlpgvEvKI~~~~E~~~~---~~~GEIlvr-------~~kdpe~T~e~~--~gW~~dG  850 (1452)
T PTZ00297        790 VF---FLPSEGV--F--CVDGTPAPSLQVDLEPFDEPSDG---AGIGQLVLA-------KKGEPRRTLPIA--AQWKRDR  850 (1452)
T ss_pred             ee---eecCCCC--c--ccCCeecCceEEEEcccccccCC---CCCCeEEEE-------ECCChHHHHHhh--CcCccCC
Confidence            53   2222222  1  12399999999999862 32221   235999996       468999998843  6998754

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=98.86  E-value=1.1e-08  Score=84.16  Aligned_cols=81  Identities=22%  Similarity=0.140  Sum_probs=68.7

Q ss_pred             CHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEccccccccccc
Q 028779           49 DLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGI  128 (204)
Q Consensus        49 ~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~  128 (204)
                      +.+.+++.|++++++++.+.|+.+..|++.......+ .++|.++++||.+++.+.+.+++.| ++++++.||+|| |.+
T Consensus       175 ~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~-~~~k~ii~~~E~l~~~~r~~Ie~~f-g~~V~~~YG~tE-g~l  251 (430)
T TIGR02304       175 PFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT-IKPKKVISVAEVLEPQDRELIRNVF-KNTVHQIYQATE-GFL  251 (430)
T ss_pred             CHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC-CCceEEEEccCCCCHHHHHHHHHHh-CCCeeEccCCch-hhe
Confidence            5788999999999999999999999998754333333 4789999999999999999999999 799999999999 555


Q ss_pred             cccc
Q 028779          129 ATME  132 (204)
Q Consensus       129 ~~~~  132 (204)
                      +..+
T Consensus       252 a~eC  255 (430)
T TIGR02304       252 ASTC  255 (430)
T ss_pred             EEec
Confidence            4433

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=98.77  E-value=1.4e-08  Score=76.89  Aligned_cols=57  Identities=19%  Similarity=0.169  Sum_probs=53.3

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCce
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVT   63 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t   63 (204)
                      ...+++++|+++ .+|++|++|+...++.+|..|+|+++.++|++..+++.|+++++|
T Consensus       171 ~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~~rFd~~~~l~~i~~~~vT  227 (227)
T TIGR03089       171 RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLVTHPDPARLDQIAETERVT  227 (227)
T ss_pred             hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEecCCCHHHHHHHHHhhcCC
Confidence            346788999999 999999999988899999999999999999999999999999987

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=98.49  E-value=1.8e-06  Score=76.21  Aligned_cols=181  Identities=17%  Similarity=0.124  Sum_probs=123.0

Q ss_pred             ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC----CCHHHHHHHHHhcCceEEEechHHHHHHHhCCCC
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV   81 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~   81 (204)
                      +...+.+..-++.+.+..--.|+..+.+...++|...++.+.    .+|..+++.|++|++.-.+.+-..++.+.+....
T Consensus       977 e~~~l~~~rpl~~~~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t 1056 (1363)
T KOG3628|consen  977 ETCQLYKSRPLLGCSSPYSGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLET 1056 (1363)
T ss_pred             HHHccccCCceEEEecCccchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhcccc
Confidence            445666666667777777777888888889999999777764    4899999999999999998888888888776544


Q ss_pred             CCCCCccc------eeeeecCCCCCHHHHHHHHHhCCC-----CcEEcccccccccccccccCCC--------C-C----
Q 028779           82 KKFDLSSL------KLVGSGAAPLGKELMEECAKNVPS-----ATVIQGYGLTETSGIATMENSF--------A-G----  137 (204)
Q Consensus        82 ~~~~l~~l------r~~~~~G~~l~~~~~~~~~~~~~~-----~~~~~~yG~tE~~~~~~~~~~~--------~-~----  137 (204)
                      +..+++..      -+++..-+.....+.+.+.+.|..     -.+.-.|+..=--.++.....+        + .    
T Consensus      1057 ~~enl~~~gnn~s~s~vv~~~~RPr~ali~sf~klfa~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~ 1136 (1363)
T KOG3628|consen 1057 SVENLSKRGNNTSSSIVVPAEERPRIALIASFKKLFAAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALRE 1136 (1363)
T ss_pred             ccchhhhhhcccccceeeecCCccHHHHHHHHHHHHHHcCCChhhhcccccccCChHhhhccccCCCCcceeechhhhhc
Confidence            44433322      222333445556777777777621     2233344433322222221000        0 0    


Q ss_pred             ------------CCCCCCccccCCCceEEEEeCCCCCCCCCCCcceEEEecCCcchhhcCC
Q 028779          138 ------------SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIMLI  186 (204)
Q Consensus       138 ------------~~~~~~~G~p~~~~~v~v~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~  186 (204)
                                  .......|...+++++.|++||+..+|.+|+.||||+.|.+.+.+|+.-
T Consensus      1137 grV~~ve~~ap~~l~L~dSG~~~~~~~i~IvnPEtk~pc~dge~GEIW~~S~hnA~~~~~~ 1197 (1363)
T KOG3628|consen 1137 GRVRLVEVGAPHSLLLYDSGKLPVYTDIAIVNPETKGPCRDGELGEIWVNSAHNASCSFTI 1197 (1363)
T ss_pred             cceeeeecCCCCccccccCCcccccceeEEeCCccccccccCCcceEEecccccccccccc
Confidence                        0011134777889999999999999999999999999999999988764

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=98.43  E-value=1.6e-06  Score=76.41  Aligned_cols=189  Identities=18%  Similarity=0.125  Sum_probs=130.5

Q ss_pred             cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC---CCHHHHHHHHHhcCceEEEechHHHHHHHhC----C
Q 028779            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKH----G   79 (204)
Q Consensus         7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~----~   79 (204)
                      .+.....+.++.-+...-..|++++++.++++|.|.+..|+   ..|..+.+.+.+++.+++..-...+......    +
T Consensus       304 v~~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p  383 (1363)
T KOG3628|consen  304 VFPVPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDP  383 (1363)
T ss_pred             ccccCcccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCc
Confidence            34556677888888888888999999999999999999986   5788999999999999876554443333211    1


Q ss_pred             -------CCCCCCCccceeeeecCCCCCHHHHHHHHHhC---------------------CCCcEEcccccccccccccc
Q 028779           80 -------LVKKFDLSSLKLVGSGAAPLGKELMEECAKNV---------------------PSATVIQGYGLTETSGIATM  131 (204)
Q Consensus        80 -------~~~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~---------------------~~~~~~~~yG~tE~~~~~~~  131 (204)
                             +-+.-++++||.+.+.-..+..+..+.....+                     .|.-....=+++|.+.....
T Consensus       384 ~a~~s~~k~~t~d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r  463 (1363)
T KOG3628|consen  384 KATLSFKKYKTPDLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSIR  463 (1363)
T ss_pred             ccccchhhccCCCccceeeeEEeeeecchHHHHHHHHhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhccccc
Confidence                   11224678999999998888877665544432                     12222333444566555544


Q ss_pred             cCCCCC----------------------------CCCCCCccccCC-CceEEEEeCCCCCCCCCCCcceEEEecCCcchh
Q 028779          132 ENSFAG----------------------------SRNIGSAGALAP-GVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG  182 (204)
Q Consensus       132 ~~~~~~----------------------------~~~~~~~G~p~~-~~~v~v~d~~~~~~~~~g~~Gel~v~g~~~~~g  182 (204)
                      .+....                            ......+|...| ++.+.|++|++.+.|..+++|||||.++++..+
T Consensus       464 ~p~~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g~~t~~vv~~~t~~LC~~~eVGEIwVsS~~~~~~  543 (1363)
T KOG3628|consen  464 RPEQMADTLPGEGLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPGDATLAVVNPDTNQLCKTDEVGEIWVSSNSLGKL  543 (1363)
T ss_pred             CcccccccCccceeeeccccccceEEEcchhhhhhcCccccceecccceEEEEeCCCcccccccCcceeEEEecCCcccc
Confidence            322100                            001112344333 467888998999999999999999999999999


Q ss_pred             hcCCccccccccc
Q 028779          183 IMLIASIILSSWG  195 (204)
Q Consensus       183 Y~~~~~~t~~~~~  195 (204)
                      ||..+..|+..|.
T Consensus       544 ~~al~~~t~~~F~  556 (1363)
T KOG3628|consen  544 FYALDKQTENTFK  556 (1363)
T ss_pred             eeeccccccceEE
Confidence            9998888877764

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=97.83  E-value=0.00021  Score=57.82  Aligned_cols=135  Identities=21%  Similarity=0.232  Sum_probs=85.7

Q ss_pred             HhccCcEEEEc-CCCCHHHHHHHHH----hcCceEEEechHHHHHHHhCCCCC--CCCCc-cceeeeecC------CCCC
Q 028779           35 QLQKGSCIILM-AKFDLEMFLRAIE----KHRVTHIWVVPPLILALAKHGLVK--KFDLS-SLKLVGSGA------APLG  100 (204)
Q Consensus        35 ~l~~G~~~~~~-~~~~~~~~~~~i~----~~~~t~~~~~p~~~~~l~~~~~~~--~~~l~-~lr~~~~~G------~~l~  100 (204)
                      .+..+..-.+. ..+|.+.+...+.    +.++..+++.|.++..++...+..  ...++ ..+.+-.||      +.++
T Consensus       161 ~~~~~~~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~  240 (365)
T PF04443_consen  161 ELFFGSRFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVS  240 (365)
T ss_pred             hcccCceeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccC
Confidence            34455553332 2367776666554    566888999998877665432222  23333 455555554      4576


Q ss_pred             -HHHHHHHHHhCCC---CcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCCCcceEEEec
Q 028779          101 -KELMEECAKNVPS---ATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRG  176 (204)
Q Consensus       101 -~~~~~~~~~~~~~---~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~~g~~Gel~v~g  176 (204)
                       .++.+.+.+.|+-   ..+++.||+||...........   ..      +.|.- +.|.||++.++++.|+.|-|.+-.
T Consensus       241 r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~---~~------~~p~w-V~iRDp~tl~~~~~Ge~Gli~vid  310 (365)
T PF04443_consen  241 REEFYARLQEVFGVIPIENIYDMYGMTELNSQAYECGHG---HF------HVPPW-VIIRDPETLEPLPPGETGLIQVID  310 (365)
T ss_pred             HHHHHHHHHHHHCCCCHHHeeeeeeccccchhheeCCCC---cc------cCCCe-EEEECCCCCcCCCCCCeeEEEEEc
Confidence             5777788887833   5899999999976554433111   11      12221 677799999999999999998887


Q ss_pred             CCc
Q 028779          177 PNM  179 (204)
Q Consensus       177 ~~~  179 (204)
                      +..
T Consensus       311 l~~  313 (365)
T PF04443_consen  311 LAN  313 (365)
T ss_pred             ccc
Confidence            643

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.09  E-value=0.0041  Score=56.26  Aligned_cols=125  Identities=15%  Similarity=0.094  Sum_probs=84.1

Q ss_pred             ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCC---CHHHHHHHHHhcCceEEEechHHHHHHHhCCCC---
Q 028779            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF---DLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV---   81 (204)
Q Consensus         8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~---~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~---   81 (204)
                      +..+..+++--...+..+-.....+.+.|+.|+.+.++...   ++.++.+.+++|+++..+.+|++.+.++.....   
T Consensus       232 f~~t~s~~~~~~~~~~~~d~i~~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~  311 (1032)
T KOG1178|consen  232 FPPTGSDRFTFKTSVYFDDTIQKFIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLP  311 (1032)
T ss_pred             CCcCccchhhhhheeecccchHHHHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchh
Confidence            44555555422222312222233366778888877777543   479999999999999999999998877654322   


Q ss_pred             ----------CCCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEccccccccccccccc
Q 028779           82 ----------KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME  132 (204)
Q Consensus        82 ----------~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~  132 (204)
                                .....+.||....+|++.+..+...+.+.+...-....|+.++......+.
T Consensus       312 ~l~~~~~~~dl~~~~~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~~y~s~~~~~~~s~~  372 (1032)
T KOG1178|consen  312 LLEHAFSLSDLLTKRSCLKLVVLGGEPLLVSLYTSTFDLLAEIFFGLPYLSTDPTGLVSYD  372 (1032)
T ss_pred             hhhhhhhcccccccchhheeeeecCCccchhhhhhhhhcccceeeeecccCCCCccceeHH
Confidence                      112335899999999999999988666665433344458888877766554

>PLN02736 long-chain acyl-CoA synthetase

Probab=86.33  E-value=6.9  Score=34.42  Aligned_cols=83  Identities=8%  Similarity=0.003  Sum_probs=61.8

Q ss_pred             cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEc-CCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCC
Q 028779            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (204)
Q Consensus         7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~   85 (204)
                      ..++.++|++...++-.--  +....++++..|+.++.. +.+.++.+..++++.++..++..+..+..+....    ..
T Consensus        97 ~~Gv~~gd~Vai~~~n~~e--~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~----~~  170 (651)
T PLN02736         97 QHGIPKGACVGLYFINRPE--WLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCL----SE  170 (651)
T ss_pred             HhCCCCCCEEEEEcCCCHH--HHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHh----hc
Confidence            4678999999888887654  333467889999998876 4678999999999999999999888776654421    12


Q ss_pred             Cccceeeeec
Q 028779           86 LSSLKLVGSG   95 (204)
Q Consensus        86 l~~lr~~~~~   95 (204)
                      ++.++.++..
T Consensus       171 ~~~l~~ii~~  180 (651)
T PLN02736        171 IPSVRLIVVV  180 (651)
T ss_pred             CCCceEEEEE
Confidence            3456665554

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=86.28  E-value=4.9  Score=33.99  Aligned_cols=88  Identities=13%  Similarity=0.044  Sum_probs=65.2

Q ss_pred             cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEc-CCCCHHHHHHHHHhcCceEEEechHHHH-----HHHh---
Q 028779            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLIL-----ALAK---   77 (204)
Q Consensus         7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~p~~~~-----~l~~---   77 (204)
                      .++++.+||+..+.|-+.  .+..+.+++-..|..++.. |.+....+.=.|.+.++..++..|.+-.     .|.+   
T Consensus        96 ~lGL~kGDrVgvwgpN~~--~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icP  173 (596)
T KOG1177|consen   96 SLGLKKGDRVGVWGPNSY--EWVLCQLACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICP  173 (596)
T ss_pred             hhcCCCCCEEEEecCChH--HHHHHHHHHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhH
Confidence            478999999999998774  3445566777788888877 5577777777889999999999887632     2322   


Q ss_pred             ------CCCCCCCCCccceeeeecC
Q 028779           78 ------HGLVKKFDLSSLKLVGSGA   96 (204)
Q Consensus        78 ------~~~~~~~~l~~lr~~~~~G   96 (204)
                            ....+...++.++.+++.+
T Consensus       174 Ev~~~~~G~lkS~~lp~lthvi~~~  198 (596)
T KOG1177|consen  174 EVMRGDPGQLKSELLPELTHVILAD  198 (596)
T ss_pred             HhhcCCCccccccccccceEEEecC
Confidence                  1234556788898888777

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=84.61  E-value=9  Score=34.11  Aligned_cols=85  Identities=11%  Similarity=0.044  Sum_probs=63.6

Q ss_pred             cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEc-CCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCC
Q 028779            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (204)
Q Consensus         7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~   85 (204)
                      ..+++++|++...++-..-  +....++++..|++++.. +.+.++.+...+++.++..++.....+..+.+..    ..
T Consensus       125 ~lG~~~gd~Vai~~~n~~e--~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~----~~  198 (696)
T PLN02387        125 ALGHNKEERVAIFADTRAE--WLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDIS----SQ  198 (696)
T ss_pred             HhCCCCCCEEEEEcCCCHH--HHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHh----hc
Confidence            4678899999888876644  444467889999998876 4678999999999999999999888777765432    12


Q ss_pred             CccceeeeecCC
Q 028779           86 LSSLKLVGSGAA   97 (204)
Q Consensus        86 l~~lr~~~~~G~   97 (204)
                      +++++.++.-++
T Consensus       199 ~~~l~~ii~~~~  210 (696)
T PLN02387        199 LETVKRVIYMDD  210 (696)
T ss_pred             cCCceEEEEECC
Confidence            345666665543

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=84.34  E-value=11  Score=34.01  Aligned_cols=77  Identities=13%  Similarity=0.130  Sum_probs=58.0

Q ss_pred             cEEEEecchhhHHHHHHHHHhHhccCcEEEEc-CCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCCccceee
Q 028779           14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV   92 (204)
Q Consensus        14 d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~~   92 (204)
                      |++...++-..  .+....++++..|++.+.. +.+.++.+..++++-++.+++..+..+..+.+..    ..++.++.+
T Consensus       131 d~V~i~~~N~~--ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~~~----~~~~~l~~i  204 (746)
T PTZ00342        131 KLLGLYGSNSI--NWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLERK----NELPHLKKL  204 (746)
T ss_pred             cEEEEEcCCCH--HHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHHhh----ccCCCceEE
Confidence            88888887654  3444578899999998887 5689999999999999999998887777765432    224567766


Q ss_pred             eecC
Q 028779           93 GSGA   96 (204)
Q Consensus        93 ~~~G   96 (204)
                      +.-+
T Consensus       205 i~~~  208 (746)
T PTZ00342        205 IILD  208 (746)
T ss_pred             EEEC
Confidence            6544

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=81.19  E-value=6.3  Score=34.68  Aligned_cols=61  Identities=8%  Similarity=0.004  Sum_probs=50.9

Q ss_pred             cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEc-CCCCHHHHHHHHHhcCceEEEech
Q 028779            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVP   69 (204)
Q Consensus         7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~p   69 (204)
                      ..+++++|++...+|-.--  +...+++++..|+..+.. +.+.++.+...+++.++..++...
T Consensus       111 ~~Gv~~GDrV~i~~~n~~e--~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~  172 (647)
T PTZ00237        111 NLNISKNDNVLIYMANTLE--PLIAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTN  172 (647)
T ss_pred             HcCCCCCCEEEEECCCCHH--HHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcc
Confidence            4689999999999998854  344477889999998777 568999999999999999998764

>PLN03102 acyl-activating enzyme; Provisional

Probab=80.12  E-value=10  Score=32.77  Aligned_cols=63  Identities=8%  Similarity=0.058  Sum_probs=51.2

Q ss_pred             ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHH
Q 028779            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLI   72 (204)
Q Consensus         8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~   72 (204)
                      .++.++|++...+|-.-  .+...+++++..|++++..+ ...++.+...+++.++..++..+...
T Consensus        59 ~Gl~~gd~Vai~~~n~~--e~~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~  122 (579)
T PLN03102         59 LNITKNDVVSVLAPNTP--AMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFE  122 (579)
T ss_pred             cCCCCCCEEEEEcCCcH--HHHHHHHHHHhcCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhH
Confidence            57889999999998654  34444789999999988875 57899999999999999998876554

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=80.02  E-value=11  Score=32.40  Aligned_cols=67  Identities=18%  Similarity=0.183  Sum_probs=53.8

Q ss_pred             cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEc-CCCCHHHHHHHHHhcCceEEEechHHHHHH
Q 028779            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILAL   75 (204)
Q Consensus         7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l   75 (204)
                      ..+++++|++...++-...  +...+++++..|+.++.. +.+.+..+...+++.+++.+...+..+..+
T Consensus        92 ~~gv~~gd~V~i~~~n~~~--~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~  159 (570)
T PRK04319         92 ELGVEKGDRVFIFMPRIPE--LYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERK  159 (570)
T ss_pred             HhCCCCCCEEEEECCCCHH--HHHHHHHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhcc
Confidence            3578899999988886654  444578899999998876 467899999999999999999888776543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	204
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		9e-32
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		3e-29
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		1e-27
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		7e-27
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		1e-26
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		1e-26
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		1e-26
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		1e-26
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		1e-26
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		2e-26
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		1e-14
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		6e-14
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		1e-11
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		1e-11
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		1e-11
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		2e-10
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		8e-10
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		6e-08
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		4e-07
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		5e-07
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		2e-05
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		3e-05
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		1e-04
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		5e-04

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score =  132 bits (333), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 73/176 (41%), Positives = 109/176 (61%), Gaps = 5/176 (2%)
Query: 13  DYVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL 71
           D V LCVLP+FH++ L +++ CG L+ G+ I++M KF++ + L  I++ +VT   +VPP+
Sbjct: 270 DDVILCVLPMFHIYALNSIMLCG-LRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPI 328
Query: 72  ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM 131
           +LA+AK    +K+DLSS+++V SGAAPLGKEL +      P+A + QGYG+TE   +  M
Sbjct: 329 VLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAM 388
Query: 132 ENSFAGSR---NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIM 184
              FA        G+ G +    E  IV  DT   L  NQ GEI +RG  +M+G +
Sbjct: 389 SLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYL 444

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 71/174 (40%), Positives = 107/174 (61%), Gaps = 5/174 (2%)
Query: 15  VFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V LCVLP+FH++ L +++ CG L+ G+ I++M KF++   L  IEK++V+   VVPP+++
Sbjct: 225 VILCVLPMFHIYALNSIMLCG-LRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMM 283
Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
           ++AK   + K DLSSL+++ SG APLGKEL +      P A + QGYG+TE   +  M  
Sbjct: 284 SIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCL 343
Query: 134 SFAGSR---NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIM 184
           +FA        G+ G +    E  IV  +T   LP NQ GEI +RG  +M+G +
Sbjct: 344 AFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYL 397

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score =  119 bits (297), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/170 (40%), Positives = 98/170 (57%), Gaps = 3/170 (1%)
Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D   L V+P  H FG+   T G L  G  ++LM +F+ E+FLR+++ +++    +VP L 
Sbjct: 239 DTAILSVVPFHHGFGM-FTTLGYLISGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLF 297
Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
             LAK  L+ K+DLS+L  + SG APL KE+ E  AK      + QGYGLTET+    + 
Sbjct: 298 SFLAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI- 356
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
            +  G    G+ G + P  EA +V +DT K L  NQ GE+ +RGP +M G
Sbjct: 357 -TPKGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELSVRGPMIMSG 405

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score =  116 bits (291), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 102/170 (60%), Gaps = 7/170 (4%)
Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           L V+P  H FG+   T G L  G  ++++ KFD E FL+ ++ ++ T++ +VP L   L 
Sbjct: 240 LTVVPFHHGFGM-FTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTNVILVPTLFAILN 298
Query: 77  KHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSG--IATMENS 134
           K  L+ K+DLS+L  + SG APL KE+ E  A+      V QGYGLTET+   I T E  
Sbjct: 299 KSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPE-- 356
Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIM 184
             G    G++G + P  +A ++ +DT+K L PN+ GE+ ++GP +M+G +
Sbjct: 357 --GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYV 404

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score =  116 bits (290), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/170 (39%), Positives = 97/170 (57%), Gaps = 3/170 (1%)
Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D   L V+P  H FG+   T G L  G  ++LM +F+ E+FLR+++ +++    +VP L 
Sbjct: 234 DTAILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLF 292
Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
              AK  L+ K+DLS+L  + SG APL KE+ E  AK      + QGYGLTET+    + 
Sbjct: 293 SFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI- 351
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
            +  G    G+ G + P  EA +V +DT K L  NQ GE+ +RGP +M G
Sbjct: 352 -TPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSG 400

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score =  116 bits (290), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/170 (39%), Positives = 97/170 (57%), Gaps = 3/170 (1%)
Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D   L V+P  H FG+   T G L  G  ++LM +F+ E+FLR+++ +++    +VP L 
Sbjct: 239 DTAILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLF 297
Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
              AK  L+ K+DLS+L  + SG APL KE+ E  AK      + QGYGLTET+    + 
Sbjct: 298 SFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI- 356
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
            +  G    G+ G + P  EA +V +DT K L  NQ GE+ +RGP +M G
Sbjct: 357 -TPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSG 405

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score =  115 bits (289), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/170 (39%), Positives = 97/170 (57%), Gaps = 3/170 (1%)
Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D   L V+P  H FG+   T G L  G  ++LM +F+ E+FLR+++ +++    +VP L 
Sbjct: 234 DTAILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLF 292
Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
              AK  L+ K+DLS+L  + SG APL KE+ E  AK      + QGYGLTET+    + 
Sbjct: 293 SFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI- 351
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
            +  G    G+ G + P  EA +V +DT K L  NQ GE+ +RGP +M G
Sbjct: 352 -TPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSG 400

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score =  115 bits (289), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 100/168 (59%), Gaps = 7/168 (4%)
Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           L V+P  H FG+   T G L  G  ++++ KFD E FL+ ++ ++ T + +VP L   L 
Sbjct: 240 LTVVPFHHGFGM-FTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILN 298
Query: 77  KHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSG--IATMENS 134
           K  L+ K+DLS+L  + SG APL KE+ E  A+      V QGYGLTET+   I T E  
Sbjct: 299 KSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPE-- 356
Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
             G    G++G + P  +A ++ +DT+K L PN+ GE+ ++GP +M+G
Sbjct: 357 --GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKG 402

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score =  115 bits (289), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 100/168 (59%), Gaps = 7/168 (4%)
Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           L V+P  H FG+   T G L  G  ++++ KFD E FL+ ++ ++ T + +VP L   L 
Sbjct: 240 LTVVPFHHGFGM-FTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILN 298
Query: 77  KHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSG--IATMENS 134
           K  L+ K+DLS+L  + SG APL KE+ E  A+      V QGYGLTET+   I T E  
Sbjct: 299 KSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPE-- 356
Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
             G    G++G + P  +A ++ +DT+K L PN+ GE+ ++GP +M+G
Sbjct: 357 --GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKG 402

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/170 (40%), Positives = 96/170 (56%), Gaps = 2/170 (1%)
Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D   L V+P  H FG+   T G L  G  I+LM +F+ E+FLR+++ +++    +VP L 
Sbjct: 268 DTAILTVIPFHHGFGM-FTTLGYLTCGFRIVLMYRFEEELFLRSLQDYKIQSALLVPTLF 326
Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
              AK  LV K+DLS+L  + SG APL KE+ E  AK      + QGYGLTET+  A + 
Sbjct: 327 SFFAKSTLVDKYDLSNLHEIASGGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTS-AIII 385
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
                    G+ G + P   A IV +DT K L  NQ GE+ ++GP +M+G
Sbjct: 386 TPRGRDDKPGACGKVVPFFSAKIVDLDTGKTLGVNQRGELCVKGPMIMKG 435

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 88/170 (51%), Gaps = 14/170 (8%)
Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L +LPLFHV GL ++   Q Q G   ++ AKFD     R IE H+VT +    P++  
Sbjct: 203 VNLGMLPLFHVTGLGLMLTLQ-QAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGN 261
Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           +       +  L+SL+ V     P   E +E      P+AT    +G +ETSG++T    
Sbjct: 262 ILDQAAPAQ--LASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLST---- 312
Query: 135 FAGSRNI-GSAGALAPGVEALIVSVDTQ-KPLPPNQLGEIWLRGPNMMRG 182
           FA  R+   SAG   P     +  VD + +PLPP ++GEI LRGP + +G
Sbjct: 313 FAPYRDRPKSAGR--PLFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKG 360

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 78/170 (45%), Gaps = 5/170 (2%)
Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D V +  LP++H  GL V +   L      I + KFD +  L      R T +  VP   
Sbjct: 196 DDVLIHALPIYHTHGLFVASNVTLFARGSXIFLPKFDPDKILDLXA--RATVLXGVPTFY 253
Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
             L +   + K      +L  SG+APL  +   E +     A V++ YG TET+      
Sbjct: 254 TRLLQSPRLTKETTGHXRLFISGSAPLLADTHREWSAKTGHA-VLERYGXTETN--XNTS 310
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
           N + G R  G+ G   PGV A +   +T K LP   +G I ++GPN+ +G
Sbjct: 311 NPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGXIEVKGPNVFKG 360

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 77/170 (45%), Gaps = 5/170 (2%)
Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D V +  LP++H  GL V +   L     +I +  FD +  L  +   R T +  VP   
Sbjct: 196 DDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPTFY 253
Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
             L +   +       ++L  SG+APL  +   E +     A V++ YG+TET+      
Sbjct: 254 TRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHA-VLERYGMTETN--MNTS 310
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
           N + G R  G+ G   PGV A +   +T   LP   +G I + GPN+  G
Sbjct: 311 NPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXG 360

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 77/170 (45%), Gaps = 5/170 (2%)
Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D V +  LP++H  GL V +   L     +I +  FD +  L  +   R T +  VP   
Sbjct: 196 DDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPTFY 253
Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
             L +   +       ++L  SG+APL  +   E +     A V++ YG+TET+      
Sbjct: 254 TRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHA-VLERYGMTETN--MNTS 310
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
           N + G R  G+ G   PGV A +   +T   LP   +G I + GPN+  G
Sbjct: 311 NPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXG 360

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 77/170 (45%), Gaps = 5/170 (2%)
Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D V +  LP++H  GL V +   L     +I +  FD +  L  +   R T +  VP   
Sbjct: 196 DDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPTFY 253
Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
             L +   +       ++L  SG+APL  +   E +     A V++ YG+TET+      
Sbjct: 254 TRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHA-VLERYGMTETN--MNTS 310
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
           N + G R  G+ G   PGV A +   +T   LP   +G I + GPN+  G
Sbjct: 311 NPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXG 360

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 89/179 (49%), Gaps = 22/179 (12%)
Query: 11  ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPP 70
           + D  +L VLP++H+ GL+V+    ++ G  + ++ KF+ E  L  I+  R+THI +VP 
Sbjct: 202 DRDTNWLSVLPIYHISGLSVLLRAVIE-GFTVRIVDKFNAEQILTMIKNERITHISLVPQ 260
Query: 71  LILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK-NVPSATVIQGYGLTETSG-- 127
            +  L + GL + ++L  + L   G A L   ++E   + N+P   +   +G+TET    
Sbjct: 261 TLNWLMQQGLHEPYNLQKILL---GGAKLSATMIETALQYNLP---IYNSFGMTETCSQF 314
Query: 128 -IATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQ-LGEIWLRGPNMMRGIM 184
             AT E   A    +G   A          +VD +   P  +  GE+ ++G N+M G +
Sbjct: 315 LTATPEMLHARPDTVGMPSA----------NVDVKIKNPNKEGHGELMIKGANVMNGYL 363

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 81/194 (41%), Gaps = 14/194 (7%)
Query: 21  PLFHV--FGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAK- 77
           P FH   FGL  +    +  G+  ++   F+ E     IEK++ T  W VPP +  L   
Sbjct: 229 PXFHSAEFGLVNLX---VTVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVPPALNVLVNT 285
Query: 78  -HGLVKKFDLSSLKLVGSGAAPLGKELMEECAK------NVPSATVIQGYGLTETSGIAT 130
                K +D S LK+  +GA P+   L+E+  K      N P     Q +G TE     T
Sbjct: 286 LESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTEACPXVT 345
Query: 131 MENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIMLIASII 190
                   ++  + G     +E  ++S++  + L   + GEI +RGPN+ +G        
Sbjct: 346 TNPPLRLDKST-TQGVPXSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKEN 404
Query: 191 LSSWGFRKIMHSFI 204
              W + +    F 
Sbjct: 405 QECWWYDEKGRKFF 418

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 78/172 (45%), Gaps = 13/172 (7%)
Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V +  LPLFHV GL +   G L++G  +  + +F  E   R +     T ++ VP +   
Sbjct: 198 VLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELNDG-ATMLFGVPTMYHR 256
Query: 75  LAKH-----GLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIA 129
           +A+       L K   L+  +L+ SG+A L     E  A       VI+ YG+TET  + 
Sbjct: 257 IAETLPADPELAKA--LAGARLLVSGSAALPVHDHERIAAAT-GRRVIERYGMTET--LM 311
Query: 130 TMENSFAGSRNIGSAGALAPGVEALIVSVDTQK--PLPPNQLGEIWLRGPNM 179
                  G    G+ G   PGVE  +V  D      L    +GEI +RGPN+
Sbjct: 312 NTSVRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNL 363

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 5/131 (3%)
Query: 16  FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILAL 75
            L  LP+FHV  L  +    + +G  +I M +FD       I + RV     VP ++  +
Sbjct: 214 LLLPLPMFHVAALTTVIFSAM-RGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFM 272
Query: 76  AKHGLVKKFDLSSLKLVGSGAAPLGKELME-ECAKNVPSATVIQGYGLTETSGIATMENS 134
            +     + D    +   +G AP+ + L++   AKN+    V+QGY LTE+ G  T+  S
Sbjct: 273 RQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKNI---EVVQGYALTESCGGGTLLLS 329
Query: 135 FAGSRNIGSAG 145
               R  GSAG
Sbjct: 330 EDALRKAGSAG 340

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 5/131 (3%)
Query: 16  FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILAL 75
            L  LP+FHV  L  +    + +G  +I M +FD       I + RV     VP ++  +
Sbjct: 200 LLLPLPMFHVAALTTVIFSAM-RGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFM 258
Query: 76  AKHGLVKKFDLSSLKLVGSGAAPLGKELME-ECAKNVPSATVIQGYGLTETSGIATMENS 134
            +     + D    +   +G AP+ + L++   AKN+    V+QGY LTE+ G  T+  S
Sbjct: 259 RQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKNI---EVVQGYALTESCGGGTLLLS 315
Query: 135 FAGSRNIGSAG 145
               R  GSAG
Sbjct: 316 EDALRKAGSAG 326

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 75/173 (43%), Gaps = 11/173 (6%)
Query: 15  VFLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V+L  LP+ H + L+     G L  G  ++L      +     IE+ +VT   +VPPL +
Sbjct: 225 VYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAM 284
Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTE----TSGIA 129
                   ++ DLSSL+++  G A    E      K V   T+ Q +G+ E     + + 
Sbjct: 285 VWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRV-KAVFGCTLQQVFGMAEGLVNYTRLD 343
Query: 130 TMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
             E     ++       ++P  E+ +   D  + + P + G +  RGP  +RG
Sbjct: 344 DPEEIIVNTQ----GKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRG 391

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 17/176 (9%)
Query: 16  FLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           +LC +P  H + ++   + G    G  ++L A     +    IEKH+V    +VPP + +
Sbjct: 228 YLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAV-S 286
Query: 75  LAKHGLVK---KFDLSSLKLVGSGAAPLGKELMEECAKNVPSA---TVIQGYGLTE-TSG 127
           L    L++   +  L+SLKL+  G A L   L    A  +P+     + Q +G+ E    
Sbjct: 287 LWLQALIEGESRAQLASLKLLQVGGARLSATL----AARIPAEIGCQLQQVFGMAEGLVN 342
Query: 128 IATMENSFAGSRNIGSAG-ALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
              +++S    + I + G  + P  E  +   +   PLP  ++G +  RGP   RG
Sbjct: 343 YTRLDDS--AEKIIHTQGYPMCPDDEVWVADAEG-NPLPQGEVGRLMTRGPYTFRG 395

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 68/170 (40%), Gaps = 5/170 (2%)
Query: 15  VFLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V+L  LP  H + L+     G L  G  ++L      +     IE+ +VT   +VPPL  
Sbjct: 225 VYLAALPXAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAX 284
Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
                   ++ DLSSL+++  G A    E      K V   T+ Q +G  E  G+     
Sbjct: 285 VWXDAASSRRDDLSSLQVLQVGGAKFSAEAARRV-KAVFGCTLQQVFGXAE--GLVNYTR 341
Query: 134 SFAGSRNI-GSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
                  I  + G      +   V  D  + + P + G +  RGP  +RG
Sbjct: 342 LDDPEEIIVNTQGKPXSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRG 391

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 75/176 (42%), Gaps = 18/176 (10%)
Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L V+P+FHV    +     L     ++   + D    +   +   VT    VP + LA
Sbjct: 221 VVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLA 280
Query: 75  LAKHGLVKKFDLSSLK--LVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
           LA +       L +L+  +VG  AAP  + L+    +      V QGYGLTETS +    
Sbjct: 281 LADYLESTGHRLKTLRRLVVGGSAAP--RSLIARFERM--GVEVRQGYGLTETSPVVVQN 336
Query: 133 ------NSFAGSRNI---GSAGALAPGVEALIVSVDTQKPLPPN--QLGEIWLRGP 177
                  S +    +      G   P V  L V+ +  +P+P +   LGE+ L+GP
Sbjct: 337 FVKSHLESLSEEEKLTLKAKTGLPIPLVR-LRVADEEGRPVPKDGKALGEVQLKGP 391

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	204
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	2e-81
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	7e-80
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	2e-79
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	4e-79
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	5e-71
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	2e-54
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	3e-53
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	6e-51
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	5e-50
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	2e-48
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	1e-46
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	4e-46
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	6e-46
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	4e-45
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	4e-44
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	2e-23
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	3e-23
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	1e-22
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	3e-22
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	1e-21
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	7e-21
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	2e-19
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	8e-11
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	3e-10
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	4e-10
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	9e-10
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	3e-09
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	8e-09
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	9e-09
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	7e-08
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	2e-07
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	3e-05
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	6e-05
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	8e-05
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	2e-04

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  250 bits (642), Expect = 2e-81
 Identities = 70/171 (40%), Positives = 102/171 (59%), Gaps = 3/171 (1%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V LCVLP+FH++ L  I    L+ G+ I++M KF++   L  IEK++V+   VVPP++++
Sbjct: 225 VILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMS 284

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           +AK   + K DLSSL+++ SG APLGKEL +      P A + QGYG+TE   +  M  +
Sbjct: 285 IAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLA 344

Query: 135 FA---GSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
           FA        G+ G +    E  IV  +T   LP NQ GEI +RG  +M+G
Sbjct: 345 FAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKG 395

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  247 bits (632), Expect = 7e-80
 Identities = 63/168 (37%), Positives = 99/168 (58%), Gaps = 3/168 (1%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
             L V+P  H FG+   T G L  G  ++++ KFD E FL+ ++ ++ T + +VP L   
Sbjct: 238 AVLTVVPFHHGFGM-FTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAI 296

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           L K  L+ K+DLS+L  + SG APL KE+ E  A+      V QGYGLTET+    +  +
Sbjct: 297 LNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIII--T 354

Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
             G    G++G + P  +A ++ +DT+K L PN+ GE+ ++GP +M+G
Sbjct: 355 PEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKG 402

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  245 bits (629), Expect = 2e-79
 Identities = 66/168 (39%), Positives = 96/168 (57%), Gaps = 3/168 (1%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
             L V+P  H FG+   T G L  G  ++LM +F+ E+FLR+++ +++    +VP L   
Sbjct: 236 AILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSF 294

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
            AK  L+ K+DLS+L  + SG APL KE+ E  AK      + QGYGLTET+    +  +
Sbjct: 295 FAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI--T 352

Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
             G    G+ G + P  EA +V +DT K L  NQ GE+ +RGP +M G
Sbjct: 353 PEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSG 400

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  253 bits (648), Expect = 4e-79
 Identities = 71/171 (41%), Positives = 103/171 (60%), Gaps = 3/171 (1%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V LCVLP+FH++ L  I    L+ G+ I++M KF++ + L  I++ +VT   +VPP++LA
Sbjct: 272 VILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLA 331

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           +AK    +K+DLSS+++V SGAAPLGKEL +      P+A + QGYG+TE   +  M   
Sbjct: 332 IAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLG 391

Query: 135 FA---GSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
           FA        G+ G +    E  IV  DT   L  NQ GEI +RG  +M+G
Sbjct: 392 FAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKG 442

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  224 bits (572), Expect = 5e-71
 Identities = 48/176 (27%), Positives = 81/176 (46%), Gaps = 10/176 (5%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
             +  +P+FH     ++    +  G+  ++M  F+ EM    IEK++ T  W VPP +  
Sbjct: 223 TIVGCMPMFHSAEFGLVNLM-VTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNV 281

Query: 75  LAK--HGLVKKFDLSSLKLVGSGAAPLGKELMEECAK------NVPSATVIQGYGLTETS 126
           L        K +D S LK+  +GA P+   L+E+  K      N P     Q +G+TE  
Sbjct: 282 LVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEAC 341

Query: 127 GIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
            + T  N         + G     +E  ++S++  + L   + GEI +RGPN+ +G
Sbjct: 342 PMVTT-NPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKG 396

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  179 bits (457), Expect = 2e-54
 Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 5/168 (2%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V +  LP++H  GL V +   L     +I + KFD +  L  +   R T +  VP     
Sbjct: 198 VLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTR 255

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           L +   + K     ++L  SG+APL  +   E +       V++ YG+TET+   +  N 
Sbjct: 256 LLQSPRLTKETTGHMRLFISGSAPLLADTHREWSA-KTGHAVLERYGMTETNMNTS--NP 312

Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
           + G R  G+ G   PGV A +   +T K LP   +G I ++GPN+ +G
Sbjct: 313 YDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKG 360

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  176 bits (450), Expect = 3e-53
 Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 5/168 (2%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
             L  LP+FHV  L  +      +G  +I M +FD       I + RV     VP ++  
Sbjct: 213 RLLLPLPMFHVAALTTVIFS-AMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNF 271

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           + +     + D    +   +G AP+ + L++  A    +  V+QGY LTE+ G  T+  S
Sbjct: 272 MRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAA--KNIEVVQGYALTESCGGGTLLLS 329

Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
               R  GSAG      +  +   D        + GE+ ++   +++ 
Sbjct: 330 EDALRKAGSAGRATMFTDVAVRGDDGV-IREHGE-GEVVIKSDILLKE 375

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  170 bits (434), Expect = 6e-51
 Identities = 55/168 (32%), Positives = 79/168 (47%), Gaps = 10/168 (5%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L +LPLFHV GL ++     Q G   ++ AKFD     R IE H+VT +    P++  
Sbjct: 203 VNLGMLPLFHVTGLGLML-TLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGN 261

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           +          L+SL+ V     P   E  E      P+AT    +G +ETSG++T    
Sbjct: 262 ILDQ--AAPAQLASLRAVTGLDTPETIERFEAT---CPNATFWATFGQSETSGLSTF--- 313

Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
                   SAG         +V  + + PLPP ++GEI LRGP + +G
Sbjct: 314 APYRDRPKSAGRPLFWRTVAVVDAEDR-PLPPGEVGEIVLRGPTVFKG 360

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  168 bits (427), Expect = 5e-50
 Identities = 42/169 (24%), Positives = 78/169 (46%), Gaps = 14/169 (8%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
            +L VLP++H+ GL+V+    + +G  + ++ KF+ E  L  I+  R+THI +VP  +  
Sbjct: 206 NWLSVLPIYHISGLSVLLRA-VIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNW 264

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEEC-AKNVPSATVIQGYGLTETSGIATMEN 133
           L + G     +  +L+ +  G A L   ++E     N+P   +   +G+TET        
Sbjct: 265 LMQQG---LHEPYNLQKILLGGAKLSATMIETALQYNLP---IYNSFGMTETCSQFLTAT 318

Query: 134 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
                    + G  +  V+  I + +          GE+ ++G N+M G
Sbjct: 319 PEMLHARPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNG 361

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  164 bits (417), Expect = 2e-48
 Identities = 36/173 (20%), Positives = 68/173 (39%), Gaps = 11/173 (6%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L ++PL+HV G   +    L      +++ +F     L+ +++ +VT ++  P  + A
Sbjct: 198 VVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDA 257

Query: 75  LAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
           LA           L SL+ V    A +   ++E   +++P    +  YG TE      M 
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLP-GEKVNIYGTTEAMNSLYMR 316

Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDT--QKPLPPNQLGEIWLRGPN-MMRG 182
                    G+  A     E  IV +     + +   + GE+ +   +    G
Sbjct: 317 -----QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVG 364

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  159 bits (404), Expect = 1e-46
 Identities = 51/173 (29%), Positives = 76/173 (43%), Gaps = 9/173 (5%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V +  LPLFHV GL +   G L++G  +  + +F  E   R +     T ++ VP +   
Sbjct: 198 VLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELN-DGATMLFGVPTMYHR 256

Query: 75  LAKHGLVKKF---DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM 131
           +A+           L+  +L+ SG+A L     E  A       VI+ YG+TET    + 
Sbjct: 257 IAETLPADPELAKALAGARLLVSGSAALPVHDHERIAA-ATGRRVIERYGMTETLMNTS- 314

Query: 132 ENSFAGSRNIGSAGALAPGVEALIVSVDTQ--KPLPPNQLGEIWLRGPNMMRG 182
                G    G+ G   PGVE  +V  D      L    +GEI +RGPN+   
Sbjct: 315 -VRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTE 366

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  159 bits (405), Expect = 4e-46
 Identities = 42/172 (24%), Positives = 72/172 (41%), Gaps = 7/172 (4%)

Query: 15  VFLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
            +LC +P  H + ++   + G    G  ++L A     +    IEKH+V    +VPP + 
Sbjct: 227 RYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVS 286

Query: 74  ALAKHGL--VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM 131
              +  +    +  L+SLKL+  G A L   L       +    + Q +G+ E     T 
Sbjct: 287 LWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIG-CQLQQVFGMAEGLVNYTR 345

Query: 132 ENSFAGSRNIGSAG-ALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
               +  + I + G  + P  E  +   +   PLP  ++G +  RGP   RG
Sbjct: 346 -LDDSAEKIIHTQGYPMCPDDEVWVADAEGN-PLPQGEVGRLMTRGPYTFRG 395

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  158 bits (401), Expect = 6e-46
 Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 5/170 (2%)

Query: 15  VFLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V+L  LP+ H + L+     G L  G  ++L      +     IE+ +VT   +VPPL +
Sbjct: 225 VYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAM 284

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
                   ++ DLSSL+++  G A    E            T+ Q +G+ E     T   
Sbjct: 285 VWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFG-CTLQQVFGMAEGLVNYTR-L 342

Query: 134 SFAGSRNIGSAG-ALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
                  + + G  ++P  E+ +     +  + P + G +  RGP  +RG
Sbjct: 343 DDPEEIIVNTQGKPMSPYDESRVWDDHDR-DVKPGETGHLLTRGPYTIRG 391

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  155 bits (395), Expect = 4e-45
 Identities = 39/170 (22%), Positives = 69/170 (40%), Gaps = 5/170 (2%)

Query: 15  VFLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
             LC LP  H F L+     G L  G C+++    +       I++H+V    +VP  ++
Sbjct: 234 RLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVI 293

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
              +     K  + SLKL+  G A   + L  +    V +  + Q +G+ E     T   
Sbjct: 294 MWLEKAAQYKDQIQSLKLLQVGGASFPESLARQ-VPEVLNCKLQQVFGMAEGLVNYT-RL 351

Query: 134 SFAGSRNIGSAG-ALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
             +  +   + G  ++   E  IV    +  +P  ++G +  RGP    G
Sbjct: 352 DDSDEQIFTTQGRPISSDDEIKIVDEQYR-EVPEGEIGMLATRGPYTFCG 400

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  152 bits (387), Expect = 4e-44
 Identities = 37/169 (21%), Positives = 69/169 (40%), Gaps = 5/169 (2%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V      LF  +GL       L  G+  ILMA +   +     + +HR T  + VP L  
Sbjct: 227 VVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYA 286

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
            +     +      ++++  S    L +E+ E          ++ G G TE   I    +
Sbjct: 287 NMLVSPNLPARADVAIRICTSAGEALPREIGERF-TAHFGCEILDGIGSTEMLHIFL--S 343

Query: 134 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
           + AG+   G+ G   PG E  +   +    +P  ++G+++++GP+    
Sbjct: 344 NRAGAVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVM 391

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 94.8 bits (235), Expect = 2e-23
 Identities = 24/183 (13%), Positives = 50/183 (27%), Gaps = 24/183 (13%)

Query: 15  VFLCVLPLF-HVFGLAVITCGQLQKGSCIIL---------------------MAKFDLEM 52
             L  +P   H+ G           G    +                          ++ 
Sbjct: 137 NTLAAIPTGPHIVGAINKERALRLGGMFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQ 196

Query: 53  FLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNV- 111
               +    +  +   PP++  L K   V      SL  +  G   L  + ++  A  + 
Sbjct: 197 VQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNLDEIKFIASEIL 256

Query: 112 PSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGE 171
           P       YG T   G++                + +P +   +V   T + +   + G 
Sbjct: 257 PDCEFSASYGSTSALGVS-RSLLITSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGN 315

Query: 172 IWL 174
           + +
Sbjct: 316 VIV 318

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score = 95.1 bits (237), Expect = 3e-23
 Identities = 35/214 (16%), Positives = 63/214 (29%), Gaps = 36/214 (16%)

Query: 4   MDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDL----EMFLRAIEK 59
            D +     +   +  LP +H  GL +  C  +  G   +L +          ++  +  
Sbjct: 221 ADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMAS 280

Query: 60  HRVTHIWVVPP----LILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK-----N 110
                    P     L         +   DL ++  + SG+  +    ++  A      N
Sbjct: 281 DFHAFSAA-PNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFN 339

Query: 111 VPSATVIQGYGLTETSGIATMENSFAGSR---------NIGSAGALAPGVEALIVSV--- 158
           +    +   Y L E +                      + G A   A G    ++S    
Sbjct: 340 LQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLP 399

Query: 159 ----------DTQKPLPPNQLGEIWLRGPNMMRG 182
                     DT    P   +GEIW+ G N+  G
Sbjct: 400 RSPIVRIVDSDTCIECPDGTVGEIWVHGDNVANG 433

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score = 93.9 bits (234), Expect = 1e-22
 Identities = 30/177 (16%), Positives = 57/177 (32%), Gaps = 14/177 (7%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIIL--MAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           +   +     +  +          G+C  +  + KFD  + L+ +  + +    +  P++
Sbjct: 249 IMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIK-SMMGAPIV 307

Query: 73  L-ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM 131
              L +  L   +    L+   +    L  E +E          + + YG TET      
Sbjct: 308 YRMLLQQDL-SSYKFPHLQNCVTVGESLLPETLENWRAQT-GLDIRESYGQTETGLT--C 363

Query: 132 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEI-----WLRGPNMMRGI 183
             S       G  G  A   +  I+       LPP   G+I      +R   +  G 
Sbjct: 364 MVSKTMKIKPGYMGTAASCYDVQIIDDKGN-VLPPGTEGDIGIRVKPIRPIGIFSGY 419

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score = 92.6 bits (231), Expect = 3e-22
 Identities = 45/184 (24%), Positives = 73/184 (39%), Gaps = 24/184 (13%)

Query: 15  VFLCVLPLFHV----FGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPP 70
           V L V+P+FHV       A    G       ++   + D    +   +   VT    VP 
Sbjct: 221 VVLPVVPMFHVNAWCLPYAATLVG----AKQVLPGPRLDPASLVELFDGEGVTFTAGVPT 276

Query: 71  LILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK-NVPSATVIQGYGLTETSGIA 129
           + LALA +       L +L+ +  G +   + L+    +  V    V QGYGLTETS + 
Sbjct: 277 VWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERMGVE---VRQGYGLTETSPVV 333

Query: 130 TMENSFAGSRNI---------GSAGALAPGVEALIVSVDTQKPLPPN--QLGEIWLRGPN 178
                 +   ++            G   P V   +   +  +P+P +   LGE+ L+GP 
Sbjct: 334 VQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPW 392

Query: 179 MMRG 182
           +  G
Sbjct: 393 ITGG 396

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score = 90.8 bits (226), Expect = 1e-21
 Identities = 43/199 (21%), Positives = 71/199 (35%), Gaps = 37/199 (18%)

Query: 20  LPLFHVFGLAVITCGQLQKGSCIILMAKFDLEM----FLRAIEKHRVTHIWVVPP----L 71
           LP  H  GL       +  G   I+M+ F        +L+ I K++ T     P      
Sbjct: 215 LPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGS-PNFAYDY 273

Query: 72  ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK-----NVPSATVIQGYGLTETS 126
            +   +    +  DLSS     +GA P+ +E ME   +               YGL E +
Sbjct: 274 CVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEAT 333

Query: 127 GIATMENSFAGSRNI-----------------GSAGALA------PGVEALIVSVDTQKP 163
            + T     +  + +                  S G+        P  E  I+  DT  P
Sbjct: 334 LLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPDTLIP 393

Query: 164 LPPNQLGEIWLRGPNMMRG 182
              +Q+GEIW++  ++ +G
Sbjct: 394 CDFDQVGEIWVQSNSVAKG 412

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 84.5 bits (210), Expect = 2e-19
 Identities = 35/156 (22%), Positives = 60/156 (38%), Gaps = 15/156 (9%)

Query: 34  GQLQKGSCIIL--MAKFDLEMFLRAIEKHRVTHIWVVPPLIL-ALAKHGLVKKFDLSSLK 90
           GQ   G  + +    +F+ +  L    K+ VT  +  PP I   L K  L   ++ S+LK
Sbjct: 287 GQWIAGCAVFVYDYDRFEAKNMLEKASKYGVT-TFCAPPTIYRFLIKEDL-SHYNFSTLK 344

Query: 91  LVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRN-IGSAGALAP 149
                  PL  E+     +      +++G+G TET  +     +F       GS G   P
Sbjct: 345 YAVVAGEPLNPEVFNRFLEFT-GIKLMEGFGQTET-VV--TIATFPWMEPKPGSIGKPTP 400

Query: 150 GVEALIVSVDTQKPLPPNQLGEIWLRG----PNMMR 181
           G +  ++     +     + GEI +      P  + 
Sbjct: 401 GYKIELMD-RDGRLCEVGEEGEIVINTMEGKPVGLF 435

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 59.6 bits (145), Expect = 8e-11
 Identities = 26/153 (16%), Positives = 53/153 (34%), Gaps = 11/153 (7%)

Query: 33  CGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL 91
               + G C +   +   L+   R   +  VTH  +VP L+            D   L  
Sbjct: 243 FLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLVPE----DAPHLVY 298

Query: 92  VGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME--NSFAGSRNIGSAGALAP 149
           +G G   +     +  + +     ++  YG TE +   +       + +R IG       
Sbjct: 299 LGVGGEKMTPRTQQIWSSS-DRVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHP---LG 354

Query: 150 GVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
              A +++  + + +     GE+ + G  +  G
Sbjct: 355 DSVAHVLAPGSNEHVKKGMAGELVIEGSLVANG 387

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 58.0 bits (141), Expect = 3e-10
 Identities = 27/155 (17%), Positives = 52/155 (33%), Gaps = 15/155 (9%)

Query: 36  LQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV 92
           +   + +I+  +    D E     I +  V  ++    L   L   G      +  L+ +
Sbjct: 669 MLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGED---WMKGLRCI 725

Query: 93  GSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM-----ENSFAGSRNIGSAGAL 147
             G        + +  + +    +I  YG TE +  AT            S  IG     
Sbjct: 726 LFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKP--- 782

Query: 148 APGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
                  I++  +Q   P   +GE+ + G  + +G
Sbjct: 783 ISNASVYILNEQSQ-LQPFGAVGELCISGMGVSKG 816

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 57.5 bits (140), Expect = 4e-10
 Identities = 29/156 (18%), Positives = 51/156 (32%), Gaps = 13/156 (8%)

Query: 36  LQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV 92
           L  G  +  + K      +    ++E+  +      P             +  L ++K  
Sbjct: 207 LVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTF 266

Query: 93  GSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM------ENSFAGSRNIGSAGA 146
                 L  E+  +  +  P AT++  YG TE +   T             S  +G    
Sbjct: 267 LFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYC-- 324

Query: 147 LAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
                  LI+  D     P  + GEI + GP++  G
Sbjct: 325 -KSDCRLLIMKEDGT-IAPDGEKGEIVIVGPSVSVG 358

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 56.4 bits (137), Expect = 9e-10
 Identities = 32/157 (20%), Positives = 56/157 (35%), Gaps = 15/157 (9%)

Query: 36  LQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV 92
           LQ G  +  + K      ++    ++K  +      P  +          +  L      
Sbjct: 206 LQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTF 265

Query: 93  GSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM------ENSFAGSRNIGSAGA 146
                 L   + +   +  P A +   YG TE +   T         S + S  +G A  
Sbjct: 266 MFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFA-- 323

Query: 147 LAPGVEALIVSVDTQ-KPLPPNQLGEIWLRGPNMMRG 182
             P +   I  +D + +PLP  + GEI + GP++ RG
Sbjct: 324 -KPDMNIFI--MDEEGQPLPEGEKGEIVIAGPSVSRG 357

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 54.9 bits (133), Expect = 3e-09
 Identities = 33/150 (22%), Positives = 58/150 (38%), Gaps = 38/150 (25%)

Query: 57  IEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPL------------GKE 102
           I++H+VT  +V P  +  L + G   ++   L SL+ +GS   P+            GK 
Sbjct: 352 IDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGK- 410

Query: 103 LMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNI---GSAGALAPGVEALIVSVD 159
              E         ++  Y  TE+     +    AG       GSA     G++A+++  +
Sbjct: 411 --NEIP-------IVDTYWQTESGSH--LVTPLAGGVTPMKPGSASFPFFGIDAVVLDPN 459

Query: 160 TQKPLPPNQLGEI------WLRGPNMMRGI 183
           T + L  +    +      W   P+  R I
Sbjct: 460 TGEELNTSHAEGVLAVKAAW---PSFARTI 486

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 53.7 bits (130), Expect = 8e-09
 Identities = 29/156 (18%), Positives = 47/156 (30%), Gaps = 13/156 (8%)

Query: 36  LQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV 92
           L  G  +  + K    D +     I +  V      P             +  + +L   
Sbjct: 210 LALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHF 269

Query: 93  GSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM------ENSFAGSRNIGSAGA 146
                 L      +  +  PSA +I  YG TE +   +                IG    
Sbjct: 270 YFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYP-- 327

Query: 147 LAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
             P     I+  D +  L   + GEI + GP + +G
Sbjct: 328 -KPDSPTYIIDEDGK-ELSSGEQGEIIVTGPAVSKG 361

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 53.3 bits (129), Expect = 9e-09
 Identities = 36/145 (24%), Positives = 58/145 (40%), Gaps = 31/145 (21%)

Query: 57  IEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPL------------GKE 102
           ++KH+V  ++  P  I AL   G   ++  D SSL+++GS   P+            GK 
Sbjct: 346 VDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGK- 404

Query: 103 LMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNI--GSAGALAPGVEALIVSVDT 160
             E+C        V+  +  TET G   M     G+  +  GSA     GV+  +V  + 
Sbjct: 405 --EKCP-------VVDTWWQTETGGF--MITPLPGAIELKAGSATRPFFGVQPALVD-NE 452

Query: 161 QKPLPPNQLGEIWLRG--PNMMRGI 183
             P      G + +    P   R +
Sbjct: 453 GHPQEGATEGNLVITDSWPGQARTL 477

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 50.6 bits (122), Expect = 7e-08
 Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 3/82 (3%)

Query: 49  DLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECA 108
           D  +  + I +      W+   L   L          L  L+ + +G   L    +    
Sbjct: 241 DPGVLRQLIGERGADSAWLTASLFNTLVDLDPD---CLGGLRQLLTGGDILSVPHVRRAL 297

Query: 109 KNVPSATVIQGYGLTETSGIAT 130
              P   ++ GYG TE +    
Sbjct: 298 LRHPRLHLVNGYGPTENTTFTC 319

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 49.4 bits (119), Expect = 2e-07
 Identities = 32/154 (20%), Positives = 61/154 (39%), Gaps = 20/154 (12%)

Query: 36  LQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV 92
           L  G+ + ++ K    D   F + I +  +T I + P  ++ L          + S++ +
Sbjct: 245 LLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQTL 298

Query: 93  GSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM----ENSFAGSRNIGSAGALA 148
            +  +     L+ +  + V     I  YG TET+  AT     + +   S  IG+     
Sbjct: 299 ITAGSATSPSLVNKWKEKVT---YINAYGPTETTICATTWVATKETIGHSVPIGAP---I 352

Query: 149 PGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
              +  IV  + Q      + GE+ + G  + RG
Sbjct: 353 QNTQIYIVDENLQ-LKSVGEAGELCIGGEGLARG 385

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 41.9 bits (97), Expect = 3e-05
 Identities = 14/52 (26%), Positives = 18/52 (34%), Gaps = 26/52 (50%)

Query: 81  VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
           +KK   +SLKL    +AP               A  I+          ATME
Sbjct: 22  LKKLQ-ASLKLYADDSAP---------------ALAIK----------ATME 47

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Length = 437

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 14/140 (10%)

Query: 39  GSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA----KHGLVKKFDLSSLKLVGS 94
           G  +I       E  ++ I+  R   I V P  +L++A    + GL      SSL++   
Sbjct: 160 GLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGL--DPVQSSLRIGIF 217

Query: 95  GAAPLGKELMEECAKNVPSATVIQGYGLTET--SGIATMENSFAGSRNIGSAGALAPGVE 152
           GA P   ++     + +     +  YGL+E    G+A+          I          E
Sbjct: 218 GAEPWTNDMRVAIEQRM-GIDAVDIYGLSEVMGPGVASECVETKDGPTIWEDHFY---PE 273

Query: 153 ALIVSVDTQKPLPPNQLGEI 172
             I+  +T + LP  +LGE+
Sbjct: 274 --IIDPETGEVLPDGELGEL 291

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443

 Score = 41.5 bits (98), Expect = 8e-05
 Identities = 34/140 (24%), Positives = 50/140 (35%), Gaps = 14/140 (10%)

Query: 39  GSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA----KHGLVKKFDLSSLKLVGS 94
           G  ++ M+    E  ++ I       I V P  +L L     + G+      SSLK+   
Sbjct: 162 GCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGM--DPAESSLKIGIF 219

Query: 95  GAAPLGKELMEECAKNVPSATVIQGYGLTETS--GIATMENSFAGSRNIGSAGALAPGVE 152
           GA P  + L  E    V     +  YGL+E    G+A           I          E
Sbjct: 220 GAEPWTQALRNEVETRV-GIDALDIYGLSEVMGPGVACECVETKDGPVIWEDHFY---PE 275

Query: 153 ALIVSVDTQKPLPPNQLGEI 172
             I+   T + LP    GE+
Sbjct: 276 --IIDPVTGEVLPDGSQGEL 293

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Length = 436

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 25/138 (18%), Positives = 53/138 (38%), Gaps = 35/138 (25%)

Query: 51  EMFLRAIEKHRVTHIWVVPPLILALA----KHGLVKKFDLSSLKLVGSGAAPLGKELMEE 106
           +  ++ I   + T +  +P   + LA    + G+      ++LK +  GA P   E   +
Sbjct: 168 KRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGI--DPRETTLKTLVIGAEPHTDEQRRK 225

Query: 107 CAKNVPSATVIQGYGLTETSGIAT------------MENSFAGSRNIGSAGALAPGVEAL 154
             + + +      +G+TE +G                E+ +               VE  
Sbjct: 226 -IERMLNVKAYNSFGMTEMNGPGVAFECQEQNGMHFWEDCYL--------------VE-- 268

Query: 155 IVSVDTQKPLPPNQLGEI 172
           I+  +T +P+P  ++GE+
Sbjct: 269 IIDPETGEPVPEGEIGEL 286

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	204
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	7e-39
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	5e-27
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	3e-25
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	1e-22
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	1e-13
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	2e-10

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  138 bits (349), Expect = 7e-39
 Identities = 40/180 (22%), Positives = 69/180 (38%), Gaps = 11/180 (6%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPP 70
           ++ C   +  V G + +  G L  G+  ++              + ++KH+V  ++  P 
Sbjct: 296 IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPT 355

Query: 71  LILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNV--PSATVIQGYGLTETS 126
            I AL   G   ++  D SSL+++GS   P+  E  E   K +      V+  +  TET 
Sbjct: 356 AIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETG 415

Query: 127 GIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRG--PNMMRGIM 184
           G        A     GSA     GV+  +V  +   P      G + +    P   R + 
Sbjct: 416 GFMITPLPGAIELKAGSATRPFFGVQPALVDNEGH-PQEGATEGNLVITDSWPGQARTLF 474

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  105 bits (262), Expect = 5e-27
 Identities = 36/183 (19%), Positives = 75/183 (40%), Gaps = 12/183 (6%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVPP 70
           VF     +  + G   +  G L  G   ++        +   +   I++H+VT  +V P 
Sbjct: 283 VFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPT 342

Query: 71  LILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSA--TVIQGYGLTETS 126
            +  L + G   ++   L SL+ +GS   P+  E+ E  ++ +      ++  Y  TE+ 
Sbjct: 343 ALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESG 402

Query: 127 GIATMENSFAGS-RNIGSAGALAPGVEALIVSVDTQKPLPPNQ-LGEIWLRG--PNMMRG 182
                  +   +    GSA     G++A+++  +T + L  +   G + ++   P+  R 
Sbjct: 403 SHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFART 462

Query: 183 IML 185
           I  
Sbjct: 463 IWK 465

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =   99 bits (248), Expect = 3e-25
 Identities = 66/168 (39%), Positives = 96/168 (57%), Gaps = 3/168 (1%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
             L V+P  H FG+   T G L  G  ++LM +F+ E+FLR+++ +++    +VP L   
Sbjct: 233 AILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSF 291

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
            AK  L+ K+DLS+L  + SG APL KE+ E  AK      + QGYGLTET+    +  +
Sbjct: 292 FAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI--T 349

Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
             G    G+ G + P  EA +V +DT K L  NQ GE+ +RGP +M G
Sbjct: 350 PEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSG 397

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score = 92.3 bits (228), Expect = 1e-22
 Identities = 42/180 (23%), Positives = 67/180 (37%), Gaps = 12/180 (6%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
             V L V+P+FHV    +     L     ++   + D    +   +   VT    VP + 
Sbjct: 212 KDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVW 271

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
           LALA +       L +L+ +  G +   + L+    +      V QGYGLTETS +    
Sbjct: 272 LALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFER--MGVEVRQGYGLTETSPVVVQN 329

Query: 133 ---------NSFAGSRNIGSAGALAPGVEALIVSVDTQK-PLPPNQLGEIWLRGPNMMRG 182
                    +           G   P V   +   + +  P     LGE+ L+GP +  G
Sbjct: 330 FVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGG 389

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score = 66.6 bits (161), Expect = 1e-13
 Identities = 30/152 (19%), Positives = 53/152 (34%), Gaps = 2/152 (1%)

Query: 33  CGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV 92
            G L  G  ++L      +     IE+ +VT   +VPPL +        ++ DLSSL+++
Sbjct: 244 LGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVL 303

Query: 93  GSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVE 152
             G A    E                            +++       + + G      +
Sbjct: 304 QVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDP--EEIIVNTQGKPMSPYD 361

Query: 153 ALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIM 184
              V  D  + + P + G +  RGP  +RG  
Sbjct: 362 ESRVWDDHDRDVKPGETGHLLTRGPYTIRGYY 393

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score = 56.8 bits (136), Expect = 2e-10
 Identities = 28/174 (16%), Positives = 60/174 (34%), Gaps = 15/174 (8%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--FDLEMFLRAIEKHRVTHIWVVPPLI 72
                  +     +  +    L   S  I++     D   F + I +  +T I + P   
Sbjct: 209 RIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPP--- 265

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
                   +    + S++ + +  +     L+ +  + V     I  YG TET+  AT  
Sbjct: 266 ---TYVVHLDPERILSIQTLITAGSATSPSLVNKWKEKVT---YINAYGPTETTICAT-- 317

Query: 133 NSFAGSRNIGSAGALAPGVEALIVSV--DTQKPLPPNQLGEIWLRGPNMMRGIM 184
              A    IG +  +   ++   + +  +  +     + GE+ + G  + RG  
Sbjct: 318 TWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYW 371

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	204
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	99.96
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	99.95
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	99.88

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=1.6e-40  Score=213.98  Aligned_cols=197  Identities=21%  Similarity=0.264  Sum_probs=171.6

Q ss_pred             CCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEECCC----CCHHHHHHHHHHCCCEEEEECHHHHHHHHHCCC
Q ss_conf             2101488881899813356587888998757305848998379----899999999984571089835699999983899
Q 028779            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL   80 (204)
Q Consensus         5 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~   80 (204)
                      ...+.++++|++++.+|++|+.++...++.+|..|+++++.+.    +++..+++.++++++|+++++|+++..|++...
T Consensus       286 ~~~~~~~~~d~~~~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~  365 (643)
T d1pg4a_         286 KYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGD  365 (643)
T ss_dssp             HHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGG
T ss_pred             HHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHCCC
T ss_conf             99619898878999277699888899999999858899995688887999999999999799399805999999985751


Q ss_pred             --CCCCCCCCCEEEEECCCCCCHHHHHHHHHHCC--CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf             --78789866103432488899999999998689--98077032565444620135898888889984546888359997
Q 028779           81 --VKKFDLSSLKLVGSGAAPLGKELMEECAKNVP--SATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIV  156 (204)
Q Consensus        81 --~~~~~l~~lr~~~~~G~~~~~~~~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~  156 (204)
                        ....++++||.++++|+++++++.+++.+.++  ++.+.+.||+||+++......+.....+.+++|+|+++++++|+
T Consensus       366 ~~~~~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~iv  445 (643)
T d1pg4a_         366 KAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALV  445 (643)
T ss_dssp             GGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEE
T ss_pred             HHCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEECHHHCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf             00245688763799998678999999999998588886399726321206657824887667777766304479789999


Q ss_pred             ECCCCCCCCCCCCCEEEEEC--CCCCHHHCCCCCCCCCCCC--HHHHCCC
Q ss_conf             48999889999951299956--8740110388201000111--0000001
Q 028779          157 SVDTQKPLPPNQLGEIWLRG--PNMMRGIMLIASIILSSWG--FRKIMHS  202 (204)
Q Consensus       157 d~~~~~~~~~g~~Gel~v~~--~~~~~gY~~~~~~~~~~~~--~~gw~~~  202 (204)
                      | ++|++++.|+.|||++++  |+++.|||++++.+.+.+.  .+|||+|
T Consensus       446 d-~~g~~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~T  494 (643)
T d1pg4a_         446 D-NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFS  494 (643)
T ss_dssp             C-TTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEE
T ss_pred             C-CCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHCHHHHCCCCCCEEEC
T ss_conf             8-999898899657999956888655500578223432120268985874

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=1.4e-37  Score=199.63  Aligned_cols=193  Identities=35%  Similarity=0.498  Sum_probs=176.1

Q ss_pred             CCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCCCC
Q ss_conf             01488881899813356587888998757305848998379899999999984571089835699999983899787898
Q 028779            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (204)
Q Consensus         7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l   86 (204)
                      ...+.+++++++++|++|..++.. .+..+..++..+.....+....+..+.++++|.+..+|+.+..+.+.......++
T Consensus       225 ~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~  303 (541)
T d1lcia_         225 GNQIIPDTAILSVVPFHHGFGMFT-TLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDL  303 (541)
T ss_dssp             SCCCCTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGGGSCC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             333443332222122222222222-2222222222222222223116778765201223357642112223442100135


Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf             66103432488899999999998689980770325654446201358988888899845468883599974899988999
Q 028779           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP  166 (204)
Q Consensus        87 ~~lr~~~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~  166 (204)
                      ++++.+++||++++++..+++.+.++...+.+.||+||+++.++......  ...+++|+|+|+++++|+|+|++++++.
T Consensus       304 ~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~--~~~~svG~p~~~~~~~i~d~d~~~~~~~  381 (541)
T d1lcia_         304 SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGD--DKPGAVGKVVPFFEAKVVDLDTGKTLGV  381 (541)
T ss_dssp             TTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSSCSEECCCC-----CCCCBEECTTCEEEEECTTTCCBCCT
T ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCC--CCCCCCCCCCCCCEEEEEECCCCCCCCC
T ss_conf             52217886455344543211112467752663577652475388667556--8777631055897799997999959999


Q ss_pred             CCCCEEEEECCCCCHHHCCCCCCCCCCCCHHHHCCC
Q ss_conf             995129995687401103882010001110000001
Q 028779          167 NQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHS  202 (204)
Q Consensus       167 g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~gw~~~  202 (204)
                      |++|||+++|++++.||+++++.+...+..+|||+|
T Consensus       382 g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~T  417 (541)
T d1lcia_         382 NQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHS  417 (541)
T ss_dssp             TCCEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEE
T ss_pred             CCEEEEEECCCCCCCEECCCHHHHHHCCCCCCCCCC
T ss_conf             984799991386377667896662210047754347

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=7e-37  Score=196.20  Aligned_cols=194  Identities=24%  Similarity=0.275  Sum_probs=165.9

Q ss_pred             CCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEC-CCCCHHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCC
Q ss_conf             21014888818998133565878889987573058489983-79899999999984571089835699999983899787
Q 028779            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (204)
Q Consensus         5 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~   83 (204)
                      ...+.....|++++.+|++|.+++...+ ..+..|++.++. +.+++..++..+.++++|.+.++|+++..+.+......
T Consensus       204 ~~~~~~~~~d~~~~~~p~~~~~~~~~~~-~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~  282 (534)
T d1v25a_         204 VDGTALSEKDVVLPVVPMFHVNAWCLPY-AATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG  282 (534)
T ss_dssp             TTTTCCCTTCEEEECSCTTSHHHHTHHH-HHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT
T ss_pred             HCCCCCCCCCCCCCCCCHHHHCCCCCCC-EEEEECCEEEECCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf             0023544466343236424414310000-001203125621433331000001121244433467156666665420244


Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCC---------CCCCCCCCCCCCCCEEE
Q ss_conf             898661034324888999999999986899807703256544462013589888---------88899845468883599
Q 028779           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG---------SRNIGSAGALAPGVEAL  154 (204)
Q Consensus        84 ~~l~~lr~~~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~---------~~~~~~~G~~~~~~~v~  154 (204)
                      .+++++|.+++||++++++..+++.+.  +.++.+.||+||++.++........         ....+++|+|+++++++
T Consensus       283 ~~~~~lr~~~~gG~~~~~~~~~~~~~~--~~~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~  360 (534)
T d1v25a_         283 HRLKTLRRLVVGGSAAPRSLIARFERM--GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLR  360 (534)
T ss_dssp             CCCSSCCEEEECSSCCCHHHHHHHHHT--TCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEE
T ss_pred             CCCCCEEEEEEECCCCCHHHHHHHHHH--CCEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCEEE
T ss_conf             554431499994687887899999984--982365036543356122034676555667311356666400013783899


Q ss_pred             EEECCCCCCCCC--CCCCEEEEECCCCCHHHCCCCCCCCCCCCHHHHCCC
Q ss_conf             974899988999--995129995687401103882010001110000001
Q 028779          155 IVSVDTQKPLPP--NQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHS  202 (204)
Q Consensus       155 i~d~~~~~~~~~--g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~gw~~~  202 (204)
                      |+| +++++++.  ++.|||+++||+++.|||++++.+.+.|..+|||+|
T Consensus       361 i~d-~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~~~~dg~~~T  409 (534)
T d1v25a_         361 VAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRT  409 (534)
T ss_dssp             EEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEE
T ss_pred             EEC-CCCCCCCCCCCEEEEEEECCCCCCCEECCCHHHHHHHCCCCCCCCC
T ss_conf             999-9999977899806899975786466124882551230536898756

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-36  Score=195.18  Aligned_cols=197  Identities=19%  Similarity=0.285  Sum_probs=166.5

Q ss_pred             CCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEECCC----CCHHHHHHHHHHCCCEEEEECHHHHHHHHHCCC-
Q ss_conf             101488881899813356587888998757305848998379----899999999984571089835699999983899-
Q 028779            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL-   80 (204)
Q Consensus         6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-   80 (204)
                      ..+.+.++|++++.+|++|+.++...++.+|..|+++++.+.    +++..+++.++++++|.+..+|+++..|.+... 
T Consensus       274 ~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~  353 (640)
T d1ry2a_         274 YTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDS  353 (640)
T ss_dssp             HHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTT
T ss_pred             HHCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEECCHHHHHHHHHCCCC
T ss_conf             63289834300001560335468999999997198899955887779999999999970862897172899999856411


Q ss_pred             -CCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCC--CCEECCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCEEEEE
Q ss_conf             -787898661034324888999999999986899--80770325654446201358988-88889984546888359997
Q 028779           81 -VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPS--ATVIQGYGLTETSGIATMENSFA-GSRNIGSAGALAPGVEALIV  156 (204)
Q Consensus        81 -~~~~~l~~lr~~~~~G~~~~~~~~~~~~~~~~~--~~i~~~yG~tE~~~~~~~~~~~~-~~~~~~~~G~~~~~~~v~i~  156 (204)
                       ....++++||.++++|+++++++.+++.+.++.  ..+.+.||+||++.......... ...+.+++|+|+++++++|+
T Consensus       354 ~~~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~  433 (640)
T d1ry2a_         354 YIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVL  433 (640)
T ss_dssp             SSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEE
T ss_pred             CCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf             12337887358999943457689999999860887641785200222454222356777677777644325578658998


Q ss_pred             ECCCCCCC-CCCCCCEEEEEC--CCCCHHHCCCCCCCCCCCC--HHHHCCC
Q ss_conf             48999889-999951299956--8740110388201000111--0000001
Q 028779          157 SVDTQKPL-PPNQLGEIWLRG--PNMMRGIMLIASIILSSWG--FRKIMHS  202 (204)
Q Consensus       157 d~~~~~~~-~~g~~Gel~v~~--~~~~~gY~~~~~~~~~~~~--~~gw~~~  202 (204)
                      |+++++.+ +.++.|||++++  |+++.|||++++++.+.|.  .+|||||
T Consensus       434 d~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw~~T  484 (640)
T d1ry2a_         434 DPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFT  484 (640)
T ss_dssp             CSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEE
T ss_pred             ECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCEEEC
T ss_conf             379985257877248999970578754661469778786413689976774

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=99.96  E-value=1.8e-28  Score=155.30  Aligned_cols=188  Identities=16%  Similarity=0.156  Sum_probs=157.2

Q ss_pred             CCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEECCC---CCHHHHHHHHHHCCCEEEEECHHHHHHHHHCCC
Q ss_conf             32101488881899813356587888998757305848998379---899999999984571089835699999983899
Q 028779            4 MDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL   80 (204)
Q Consensus         4 ~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~   80 (204)
                      ....+....+|+++...|++|..++.. ++.++..|+++++.+.   .+....++.+..+.++.+..+|.....      
T Consensus       198 ~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  270 (514)
T d1amua_         198 FENSLNVTEKDRIGQFASISFDASVWE-MFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVH------  270 (514)
T ss_dssp             HHHTSCCCTTCEEEECSCTTSTHHHHH-HHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTT------
T ss_pred             CCCCCCCCCCCCCCCEECCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCC------
T ss_conf             222222223454421000232244321-0010221110012344333304555566665312211110110112------


Q ss_pred             CCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCEEEEEECC
Q ss_conf             78789866103432488899999999998689980770325654446201358988-88889984546888359997489
Q 028779           81 VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA-GSRNIGSAGALAPGVEALIVSVD  159 (204)
Q Consensus        81 ~~~~~l~~lr~~~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~-~~~~~~~~G~~~~~~~v~i~d~~  159 (204)
                      ....++.+++.++++|+++++++.+++.+   +..+.+.||+||++.+++...... ......+.|.+.++..+.+.| +
T Consensus       271 ~~~~~~~~l~~~~~~G~~~~~~~~~~~~~---~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~  346 (514)
T d1amua_         271 LDPERILSIQTLITAGSATSPSLVNKWKE---KVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-E  346 (514)
T ss_dssp             SCTTTCCSCSEEEEESSCCCHHHHHHHTT---TSEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-T
T ss_pred             CCCCCCCCCCEEEEECCCCCHHHHHHHCC---CEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEC-C
T ss_conf             22124554538998214589788543135---5169974125667335541135655557666666402333576511-4


Q ss_pred             CCCCCCCCCCCEEEEECCCCCHHHCCCCCCCCCCCC------HHHHCCC
Q ss_conf             998899999512999568740110388201000111------0000001
Q 028779          160 TQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWG------FRKIMHS  202 (204)
Q Consensus       160 ~~~~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~------~~gw~~~  202 (204)
                      ++++++.|+.|||+++||.+++||+++++.+.+.|.      .+|||+|
T Consensus       347 ~~~~~~~g~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~T  395 (514)
T d1amua_         347 NLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKT  395 (514)
T ss_dssp             TSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEE
T ss_pred             CCEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEE
T ss_conf             6335699972599972585446420354455002675135688836897

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=99.95  E-value=5.9e-29  Score=157.63  Aligned_cols=197  Identities=21%  Similarity=0.254  Sum_probs=163.8

Q ss_pred             CCCCCCCCCCCEEEEECCHHHHHHHHHH-HHHHHCCCCEEEECCCCCHHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCC
Q ss_conf             3210148888189981335658788899-875730584899837989999999998457108983569999998389978
Q 028779            4 MDQETAGELDYVFLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK   82 (204)
Q Consensus         4 ~~~~~~~~~~d~~l~~~pl~h~~g~~~~-~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~   82 (204)
                      ..+.+...++|++++..|++|.+++... +...+..|.+++..+.+++..++..+++++++.+..+|..+..+.......
T Consensus       214 ~~~~~~~~~~d~~l~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (536)
T d1mdba_         214 SVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR  293 (536)
T ss_dssp             HHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCC
T ss_conf             22222234433322222333222200011223123554223568899899999976520233222211466654301333


Q ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC
Q ss_conf             78986610343248889999999999868998077032565444620135898888889984546888359997489998
Q 028779           83 KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQK  162 (204)
Q Consensus        83 ~~~l~~lr~~~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~  162 (204)
                      ...+++++.+++||++++++..+++.+.+ +......|+.+|........... .....+++|.|.++....+++.++++
T Consensus       294 ~~~~~~~~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~p~~~~~~~~v~~~~g~  371 (536)
T d1mdba_         294 RDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGMAEGLVNYTRLDDP-EEIIVNTQGKPMSPYDESRVWDDHDR  371 (536)
T ss_dssp             CCCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEEEEECTTSCEEECCTTSC-HHHHHHCCCEESSTTCEEEEECTTSC
T ss_pred             CCCCCCCEEEEEECCCCCCCCCCCHHHCC-CCEEEECCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCEEEEECCCCC
T ss_conf             22567550599841333444321012125-73221023433211233211211-23456775567778624799769897


Q ss_pred             CCCCCCCCEEEEECCCCCHHHCCCCCCCCCCCCHHHHCCC
Q ss_conf             8999995129995687401103882010001110000001
Q 028779          163 PLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHS  202 (204)
Q Consensus       163 ~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~gw~~~  202 (204)
                      +++.++.|||+++|+.++.||+++++.+...+..+||++|
T Consensus       372 ~~~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~t  411 (536)
T d1mdba_         372 DVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRT  411 (536)
T ss_dssp             BCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEE
T ss_pred             EECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             6034224314137886433200233233112235675335

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=99.88  E-value=2.6e-22  Score=125.33  Aligned_cols=191  Identities=17%  Similarity=0.214  Sum_probs=152.4

Q ss_pred             CCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCEEEEECHHHHHHHHHC--CCCCCCC
Q ss_conf             14888818998133565878889987573058489983798999999999845710898356999999838--9978789
Q 028779            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH--GLVKKFD   85 (204)
Q Consensus         8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~--~~~~~~~   85 (204)
                      ......++....+|++|..+.....+.....++++++.+.+++..++..+.+++++....+|+.+..+...  .......
T Consensus       191 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (503)
T d3cw9a1         191 LRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLK  270 (503)
T ss_dssp             CCSSTTCEEEECSCTTSHHHHHTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCEEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             22222222234576422222232222221223432346656857754311110000011222222221244433343446


Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf             86610343248889999999999868998077032565444620135898888889984546888359997489998899
Q 028779           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  165 (204)
Q Consensus        86 l~~lr~~~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~  165 (204)
                      ++++|.++++|++++++...++.+.+ +..+.+.||.+|++..........  ......+.+.+.....+.+ ..++.++
T Consensus       271 ~~~Lr~i~~gG~~~~~~~~~~~~~~~-~~~~~~~yg~~e~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~  346 (503)
T d3cw9a1         271 LDSLRHVTFAGATMPDAVLETVHQHL-PGEKVNIYGTTEAMNSLYMRQPKT--GTEMAPGFFSEVRIVRIGG-GVDEIVA  346 (503)
T ss_dssp             CTTCCEEEECSSCCCHHHHHHHHHHC-CSEEEEEEEETTTEEEEEEESCSS--SSEEBCCTTCCEEEECTTS-CTTCBCC
T ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCEEEEECCCCC--CCCCCCCCCCCCEEEEEEC-CCCCCCC
T ss_conf             65147997436544453222222222-211235445421120121012234--4444433554212565302-4686368


Q ss_pred             CCCCCEEEEEC-CCCCHHHCCCCCCCCCCCCHHHHCCCC
Q ss_conf             99951299956-874011038820100011100000014
Q 028779          166 PNQLGEIWLRG-PNMMRGIMLIASIILSSWGFRKIMHSF  203 (204)
Q Consensus       166 ~g~~Gel~v~~-~~~~~gY~~~~~~~~~~~~~~gw~~~~  203 (204)
                      .|+.|++.+++ +....+|+++++.+.+.|. +|||+|-
T Consensus       347 ~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~~-~g~~~Tg  384 (503)
T d3cw9a1         347 NGEEGELIVAASDSAFVGYLNQPQATAEKLQ-DGWYRTS  384 (503)
T ss_dssp             TTCCEEEEEECCTTSCCCBTTCHHHHHHHEE-TTEEEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHC-CCCEECC
T ss_conf             9852200111122222223577343487731-8851113