Citrus Sinensis ID: 028780

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200----
Protein Sequence
MSGDLYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWFLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMAISKGRQGREAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMSEVFKLAVSSFKVNDWSLFGGTAAA
Secondary Structure (PSIPRED)
ccccccccccccccEEEEcccccccccccccccccccEEEEcccccEEEEEEEEcccccccccHHHHHHHHHHHccccccccEEEEcccEEEcccccccccccEEEEEEEEEEEcccccccccccEEEEEEEEEEcccccccEEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHcEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEHHHcEEEEEcccEEEHHHcccccccEEEEEEcccccEEEEEEHHcccccccHHHHHHHHHHHHcccccccEEEEEcccccccccccccccccEEEEEEEEEccccccccccccccEEEEEEEEEccccccEEEEEEEccccccccccccccccccccccccHcHHHHHHHHHHHHHHHcEEccccHccccccc
Coil and Loop (DISEMBL)
msgdlyserplfggaisssfphrfqdvsnirqvpdhqevfvdpsrdESLIFELLDfkldvgdngsaAWFLQDLATEqdaegctlleqsgvveapglrykdlpatvTTAVGQMAISKGRQGREAQNIVKVYLANLRLKEVGTDVLvtayepllinplsesastvgaglpvpatqsgfmQMSEVFKLAVSSFkvndwslfggtaaa
Flexible Loop (DISEMBL)
MSGDLYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWFLQDLATEQDAEGCTLLEqsgvveapglryKDLPATVTTAVGQMAIskgrqgreaQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMSEVFKLAVSSFKVNDWSLFGGTAAA
Low Complexity Region (SEG)
MSGDLYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWFLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMAISKGRQGREAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMSEVFKLAVSSFKVNDWSLFGGTAAA
Disordered region (IsUnstruct)
*****************************I******QEVFVDPSRDESLIFELLDFKLDVGDNGSAAWFLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMAISKGRQGREAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMSEVFKLAVSSFKVNDWSLFG*****
Disordered Region (DISOPRED)
****LYS**PLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWFLQDLATEQDAEGCTLLEQSG**********DLPATVTTAV*****************VKVYLANLRLKEVGTDVLVTAYEPLL*********************SGFMQMSEVFKLAVSSFKVNDWSLFGGT***
Disordered Region (DISEMBL)
MSGDLYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWFLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMAISKGRQGREAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMSEVFKLAVSSFKVNDWSLFGGTAAA
Disordered Region (DISPRO)
****LYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWFLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMAISKGRQGREAQNIVKVYLANLRLKEVGTDVLVTAYEPLLI*****************ATQSGFMQMSEVFKLAVSSFKVNDWSLFGG****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSGDLYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWFLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMAISKGRQGREAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMSEVFKLAVSSFKVNDWSLFGGTAAA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	204	2.2.26 [Sep-21-2011]
Q54ML6	195	Probable ran guanine nucl	yes	no	0.911	0.953	0.318	1e-18
Q32PE2	186	Ran guanine nucleotide re	yes	no	0.872	0.956	0.326	2e-14
Q9JIB0	185	Ran guanine nucleotide re	yes	no	0.857	0.945	0.329	1e-13
Q9HD47	186	Ran guanine nucleotide re	yes	no	0.857	0.940	0.322	1e-13
O75002	190	Nuclear import protein mo	yes	no	0.906	0.973	0.272	2e-11
P47123	218	Nuclear import protein MO	yes	no	0.843	0.788	0.291	5e-08

>sp|Q54ML6|MOG1_DICDI Probable ran guanine nucleotide release factor OS=Dictyostelium discoideum GN=mog1 PE=3 SV=1

 Score = 93.2 bits (230), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 107/201 (53%), Gaps = 15/201 (7%)

Query: 3   GDLYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGD 62
            + + +R L+GGAI    P RF DV++ R +PDHQE+F D   D+S+I EL +F+  + +
Sbjct: 2   SETFEKRQLYGGAIEIDIPRRFIDVTSYRHIPDHQELFSDEKSDQSVIIELNEFQDHISN 61

Query: 63  NGSAAWFLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLP---ATVTTAV--GQMAISKG 117
             +     + L   +DA   T  ++S ++    L   ++P   A++   V   Q  I+K 
Sbjct: 62  ANAIKHHYEVLV--EDAGIST--DKSVILNFRELTQAEMPNFDASIPKYVLLAQQKIAKF 117

Query: 118 RQGREAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFM 177
            +   A+N + +Y+A +RL++  TD+L+T  E + + P S S + V    P    QS   
Sbjct: 118 NET--AENTINIYMALVRLEKSKTDLLITFNEAIALAPTSSSVAVVQNLTP-SNDQSKSE 174

Query: 178 QMSEVFKLAVSSFKVNDWSLF 198
           Q+   F   + SFK+ D+SLF
Sbjct: 175 QL---FLTMLKSFKIKDYSLF 192

May regulate the intracellular trafficking of ran.
Dictyostelium discoideum (taxid: 44689)

>sp|Q32PE2|MOG1_BOVIN Ran guanine nucleotide release factor OS=Bos taurus GN=RANGRF PE=2 SV=1

 Score = 78.6 bits (192), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 97/193 (50%), Gaps = 15/193 (7%)

Query: 8   ERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAA 67
           + PLFGGA S++ P    DVS++R VPDHQEVF     D+SLI ELL+ +  V    +A 
Sbjct: 6   DNPLFGGAFSATLPPGAIDVSDLRPVPDHQEVFCHRVTDQSLIVELLELQAHVQGEEAAR 65

Query: 68  WFLQDLATEQDAEGCTL-LEQSGVVEAPGLRYKDLPATVTTAVGQMAISKGRQGREAQNI 126
           +  +D+   Q+A    +   Q  V+E   LR     A + +  GQ  ++K  Q  +    
Sbjct: 66  YHFEDVGGVQEARAVQVETVQPLVLEKLALRGCCQEAWILS--GQQQVAKENQ--QVAKY 121

Query: 127 VKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMSEVFKLA 186
           V ++ A LRL +  TD+L+T  +P    P    +S     L +P    G       F+  
Sbjct: 122 VTLHQALLRLPQYQTDLLLTFNQP----PPENRSSLGPENLSIPPWSLG------DFEQL 171

Query: 187 VSSFKVNDWSLFG 199
           V+S  ++D ++FG
Sbjct: 172 VTSLTLHDPNIFG 184

May regulate the intracellular trafficking of RAN. In cardiac cells seems to regulate the cell surface localization of SCN5A.

Bos taurus (taxid: 9913)

>sp|Q9JIB0|MOG1_MOUSE Ran guanine nucleotide release factor OS=Mus musculus GN=Rangrf PE=1 SV=1

 Score = 76.3 bits (186), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 94/191 (49%), Gaps = 16/191 (8%)

Query: 10  PLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWF 69
           PLFGGA S+  P    DVS++R VPD+QEVF  P  D+SLI ELL+ +  V    +A + 
Sbjct: 8   PLFGGAFSAILPTGAIDVSDLRPVPDNQEVFCHPVTDQSLIIELLELQAHVQGEAAARYH 67

Query: 70  LQDLATEQDAEGCTLLE-QSGVVEAPGLRYKDLPATVTTAVGQMAISKGRQGREAQNIVK 128
            +D+   Q A    +L  Q   +E   LR     A   +   Q+A    ++ ++    V 
Sbjct: 68  FEDVGRVQGARAVHVLSVQPLCLENLSLRGCCQDAWSLSGKQQVA----KENQQVAKDVT 123

Query: 129 VYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMSEVFKLAVS 188
           ++ A LRL +  TD+L+T  +P      S S        P P + S F Q+       V+
Sbjct: 124 LHQALLRLPQYQTDLLLTFNQPPCH---SRSLGPENLSCP-PWSLSNFEQL-------VT 172

Query: 189 SFKVNDWSLFG 199
           S  ++D +LFG
Sbjct: 173 SLTLHDPNLFG 183

May regulate the intracellular trafficking of RAN. In cardiac cells seems to regulate the cell surface localization of SCN5A.

Mus musculus (taxid: 10090)

>sp|Q9HD47|MOG1_HUMAN Ran guanine nucleotide release factor OS=Homo sapiens GN=RANGRF PE=1 SV=1

 Score = 76.3 bits (186), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 96/192 (50%), Gaps = 17/192 (8%)

Query: 10  PLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWF 69
           PLFGGA S+  P    DVS++R VPD+QEVF  P  D+SLI ELL+ +  V    +A + 
Sbjct: 8   PLFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRGEAAARYH 67

Query: 70  LQDLATEQDAEGCTLLE-QSGVVEAPGLRYKDLPATVTTAVGQMAISKGRQGREAQNIVK 128
            +D+   Q A    +   Q   +E   LR +   A V +   Q+A    ++ ++    V 
Sbjct: 68  FEDVGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIA----KENQQVAKDVT 123

Query: 129 VYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGL-PVPATQSGFMQMSEVFKLAV 187
           ++ A LRL +  TD+L+T  +P    P    +S     L P P +   F Q+       V
Sbjct: 124 LHQALLRLPQYQTDLLLTFNQP----PPDNRSSLGPENLSPAPWSLGDFEQL-------V 172

Query: 188 SSFKVNDWSLFG 199
           +S  ++D ++FG
Sbjct: 173 TSLTLHDPNIFG 184

May regulate the intracellular trafficking of RAN. In cardiac cells seems to regulate the cell surface localization of SCN5A.

Homo sapiens (taxid: 9606)

>sp|O75002|MOG1_SCHPO Nuclear import protein mog1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mog1 PE=3 SV=1

 Score = 69.3 bits (168), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 94/191 (49%), Gaps = 6/191 (3%)

Query: 11  LFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDE-SLIFELLDFKLDVGDNGSAAWF 69
           LFGGA+ + FP +F D S +RQ+PD+QEVF+  S++  ++I ELL+      D   AA+ 
Sbjct: 4   LFGGALCADFPPKFLDASVLRQIPDNQEVFLQDSKENLTVIIELLEKIEKPFDGSVAAYH 63

Query: 70  LQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVG-QMAISKGRQGREAQNIVK 128
              +A + DA    +     + E      +   A+ ++  G Q  + KG++  E+   V 
Sbjct: 64  FNSIAFDNDASQRVIWRDKSLGEDDFEGMRSEKASGSSVQGCQRVLEKGKRNPESATNVA 123

Query: 129 VYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMSEVFKLAVS 188
           +++  + L +  TD++++   PL   P + S  +    +P P+ QS      E  +    
Sbjct: 124 IFVNVITLIDFQTDIVISVNAPL---PNTSSVPSSVENIP-PSDQSIVRAALETIQRVTR 179

Query: 189 SFKVNDWSLFG 199
           S  + D ++F 
Sbjct: 180 SLVLVDKTVFA 190

Involved in the Ran-GTPase system for nuclear protein import and poly(A)+ mRNA export. Required for mitosis-to-interphase transition.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P47123|MOG1_YEAST Nuclear import protein MOG1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MOG1 PE=1 SV=1

 Score = 57.8 bits (138), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 96/206 (46%), Gaps = 34/206 (16%)

Query: 7   SERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRD-----------ESLIFELLD 55
            E  L+GGAI++  P  F D S +R+VPD QEV+V+  RD           ES+I +LL+
Sbjct: 34  KEVELYGGAITTVVPPGFIDASTLREVPDTQEVYVNSRRDEEEFEDGLATNESIIVDLLE 93

Query: 56  FKLDVGDNGSAAWF-LQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMAI 114
             +D  D   A  F ++DL           L++  V +  G ++  L   V    G+  +
Sbjct: 94  -TVDKSDLKEAWQFHVEDLTELNGTTKWEALQEDTVQQ--GTKFTGLVMEVANKWGKPDL 150

Query: 115 SKGRQGREAQNIVKVYLANLRLKEVGTDVLVTAYEPLLIN-PLSESASTVGAGLPVPATQ 173
                   AQ +V + +A +RL +  TDV+++      IN PL++  ++  +   +PA  
Sbjct: 151 --------AQTVV-IGVALIRLTQFDTDVVIS------INVPLTKEEASQASNKELPARC 195

Query: 174 SGFMQMSEVFKLAVSSFKVNDWSLFG 199
               Q+    +  V  F V D SLF 
Sbjct: 196 HAVYQL---LQEMVRKFHVVDTSLFA 218

Involved in the Ran-GTPase system for nuclear protein import and poly(A)+ mRNA export.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
255566403	203	Nuclear import protein mog1, putative [R	0.990	0.995	0.797	3e-92
449434790	202	PREDICTED: probable ran guanine nucleoti	0.990	1.0	0.792	5e-89
356499793	198	PREDICTED: ran guanine nucleotide releas	0.970	1.0	0.777	5e-86
357486819	402	Ran guanine nucleotide release factor [M	0.985	0.5	0.761	7e-86
359806063	198	uncharacterized protein LOC100786093 [Gl	0.970	1.0	0.777	1e-85
297838735	202	predicted protein [Arabidopsis lyrata su	0.990	1.0	0.752	5e-85
224123614	197	predicted protein [Populus trichocarpa]	0.960	0.994	0.763	3e-83
18409343	202	Mog1/PsbP/DUF1795-like photosystem II re	0.990	1.0	0.737	3e-83
297805022	184	hypothetical protein ARALYDRAFT_355491 [	0.901	1.0	0.755	2e-75
359473364	267	PREDICTED: probable ran guanine nucleoti	0.872	0.666	0.769	3e-73

>gi|255566403|ref|XP_002524187.1| Nuclear import protein mog1, putative [Ricinus communis] gi|223536556|gb|EEF38202.1| Nuclear import protein mog1, putative [Ricinus communis]

 Score =  343 bits (879), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 161/202 (79%), Positives = 182/202 (90%)

Query: 1   MSGDLYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDV 60
           M  D Y+ERPLFGGAI++SFP RFQDVSNIRQVPDHQEVFVDP+RDESLIFELLDFK D+
Sbjct: 1   MPEDSYTERPLFGGAITTSFPLRFQDVSNIRQVPDHQEVFVDPARDESLIFELLDFKHDI 60

Query: 61  GDNGSAAWFLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMAISKGRQG 120
           GDNGSA WFLQDLA EQDAEGCTL+EQSGVVEAPGL Y+D P  V+TAVGQM ISKGRQG
Sbjct: 61  GDNGSATWFLQDLANEQDAEGCTLIEQSGVVEAPGLLYRDNPTVVSTAVGQMNISKGRQG 120

Query: 121 REAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMS 180
           REAQN+V+VYLAN+RLK V +DVL+TAYEP+LI+PLSE+A TVGAG+ +PA QSGF+ MS
Sbjct: 121 REAQNVVRVYLANIRLKGVSSDVLITAYEPVLIHPLSETARTVGAGMAIPAAQSGFLPMS 180

Query: 181 EVFKLAVSSFKVNDWSLFGGTA 202
           EVFKLAVS+FKVNDW+LFG  A
Sbjct: 181 EVFKLAVSTFKVNDWNLFGSAA 202

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434790|ref|XP_004135179.1| PREDICTED: probable ran guanine nucleotide release factor-like [Cucumis sativus] gi|449478418|ref|XP_004155313.1| PREDICTED: probable ran guanine nucleotide release factor-like [Cucumis sativus]

 Score =  332 bits (852), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 160/202 (79%), Positives = 178/202 (88%)

Query: 1   MSGDLYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDV 60
           MS D  +ER LFGGAI S+FP RFQDVSN+RQVPDHQEVFVDPSRDESLIFELLDFK DV
Sbjct: 1   MSADFSTERALFGGAIVSTFPLRFQDVSNVRQVPDHQEVFVDPSRDESLIFELLDFKHDV 60

Query: 61  GDNGSAAWFLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMAISKGRQG 120
           GDNGSA WFLQDLATEQDAEG  ++EQSGV+EAP L Y ++P+  TTAVGQMAISKGRQG
Sbjct: 61  GDNGSAVWFLQDLATEQDAEGSVVIEQSGVIEAPELCYGNIPSVATTAVGQMAISKGRQG 120

Query: 121 REAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMS 180
           REAQNIV+VYLANLRLK VGTDVL++AYEP++INPLSESAS+VG+GL  PA+ SG+M M 
Sbjct: 121 REAQNIVRVYLANLRLKGVGTDVLISAYEPIVINPLSESASSVGSGLATPASHSGYMPMP 180

Query: 181 EVFKLAVSSFKVNDWSLFGGTA 202
           EVFKLAVSSFKV DWSLFG  A
Sbjct: 181 EVFKLAVSSFKVCDWSLFGAPA 202

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499793|ref|XP_003518721.1| PREDICTED: ran guanine nucleotide release factor-like [Glycine max]

 Score =  322 bits (826), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 154/198 (77%), Positives = 171/198 (86%)

Query: 1   MSGDLYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDV 60
           M  D+  + PLFGG I+S+FPHRFQDVSNIRQVPDHQEVF DPS DESLIFELL+FK DV
Sbjct: 1   MPEDIVYQHPLFGGKIASTFPHRFQDVSNIRQVPDHQEVFADPSHDESLIFELLEFKPDV 60

Query: 61  GDNGSAAWFLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMAISKGRQG 120
            DNGSAAWFLQDLATEQDAEG  ++EQSGV+EAPGL YK++PA V TAVGQMAISKGRQG
Sbjct: 61  ADNGSAAWFLQDLATEQDAEGSVVIEQSGVLEAPGLMYKNMPAVVITAVGQMAISKGRQG 120

Query: 121 REAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMS 180
           REAQN VKVYLANL LK V TDVLVTAYEP++INP SESA TVGAG+ VPA Q+G M M 
Sbjct: 121 REAQNFVKVYLANLHLKGVDTDVLVTAYEPIVINPFSESADTVGAGVAVPAAQAGCMPME 180

Query: 181 EVFKLAVSSFKVNDWSLF 198
           EVFKLAV+SF+V+DW LF
Sbjct: 181 EVFKLAVTSFRVHDWGLF 198

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357486819|ref|XP_003613697.1| Ran guanine nucleotide release factor [Medicago truncatula] gi|355515032|gb|AES96655.1| Ran guanine nucleotide release factor [Medicago truncatula]

 Score =  322 bits (824), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 153/201 (76%), Positives = 175/201 (87%)

Query: 1   MSGDLYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDV 60
           MS D+  +RPLFGG ISS+FP+RFQDVS+IRQVPDHQEVF DPSRDESLI ELL+FK D+
Sbjct: 200 MSQDVVYQRPLFGGKISSTFPNRFQDVSDIRQVPDHQEVFADPSRDESLIVELLEFKPDI 259

Query: 61  GDNGSAAWFLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMAISKGRQG 120
            D+GSAAWFLQDLA EQDAEG  ++EQSGV+EAPGL Y ++PA VTTAVGQMAISKGRQG
Sbjct: 260 ADDGSAAWFLQDLAREQDAEGTVVIEQSGVLEAPGLMYNNIPAVVTTAVGQMAISKGRQG 319

Query: 121 REAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMS 180
           REAQNIVKVYLANLR+K V TDVL+TAYEP++INP SESA TVGAG+ VPA+Q+G M M 
Sbjct: 320 REAQNIVKVYLANLRVKGVDTDVLITAYEPIVINPFSESADTVGAGMAVPASQAGCMSMD 379

Query: 181 EVFKLAVSSFKVNDWSLFGGT 201
           EVFKLA +SFKV DWSLF  +
Sbjct: 380 EVFKLAATSFKVYDWSLFDAS 400

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806063|ref|NP_001241181.1| uncharacterized protein LOC100786093 [Glycine max] gi|255642279|gb|ACU21404.1| unknown [Glycine max]

 Score =  321 bits (822), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 154/198 (77%), Positives = 173/198 (87%)

Query: 1   MSGDLYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDV 60
           M  D+  + PLFGG ISS+FPHRFQDVS+IRQVPDHQEVF DPSRDESLIFELL+FK DV
Sbjct: 1   MPEDIVYQHPLFGGKISSTFPHRFQDVSSIRQVPDHQEVFADPSRDESLIFELLEFKPDV 60

Query: 61  GDNGSAAWFLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMAISKGRQG 120
            DNGSA WFLQDLA+EQDAEG  ++EQSGV+EAPGL Y + PA VTTAVGQMAISKGRQG
Sbjct: 61  ADNGSAGWFLQDLASEQDAEGSVVIEQSGVLEAPGLMYNNTPAVVTTAVGQMAISKGRQG 120

Query: 121 REAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMS 180
           REAQNIVKVYLANLRL+ V TDVLV+AYEP++INPLSESA TVGAG+ VPA Q+G M M 
Sbjct: 121 REAQNIVKVYLANLRLRGVDTDVLVSAYEPIVINPLSESADTVGAGVAVPAAQAGCMPMD 180

Query: 181 EVFKLAVSSFKVNDWSLF 198
           EVFKLAV+SF+V+DW LF
Sbjct: 181 EVFKLAVTSFRVHDWGLF 198

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838735|ref|XP_002887249.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297333090|gb|EFH63508.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  319 bits (817), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 152/202 (75%), Positives = 177/202 (87%)

Query: 1   MSGDLYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDV 60
           MSG+L S RPLFGGAIS+ FP RFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFK +V
Sbjct: 1   MSGELCSVRPLFGGAISTVFPQRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKTEV 60

Query: 61  GDNGSAAWFLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMAISKGRQG 120
           GD GSA+WFL DLA EQDAEG  L+EQS V+EAPGL ++++PA  TTA+G+MAISKGRQG
Sbjct: 61  GDIGSASWFLNDLAREQDAEGFQLIEQSEVIEAPGLSFRNIPAIATTAIGEMAISKGRQG 120

Query: 121 REAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMS 180
           REAQN+V+VY+ANLRLK V TDVLVTAYEP+LINPLS+SA  VG+GL VPA+QSG M M 
Sbjct: 121 REAQNLVRVYVANLRLKGVDTDVLVTAYEPILINPLSKSADAVGSGLAVPASQSGIMPMC 180

Query: 181 EVFKLAVSSFKVNDWSLFGGTA 202
           +V K ++S+FKVNDW+LFG +A
Sbjct: 181 DVIKQSLSTFKVNDWNLFGSSA 202

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123614|ref|XP_002319123.1| predicted protein [Populus trichocarpa] gi|118483128|gb|ABK93471.1| unknown [Populus trichocarpa] gi|222857499|gb|EEE95046.1| predicted protein [Populus trichocarpa]

 Score =  313 bits (802), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 152/199 (76%), Positives = 172/199 (86%), Gaps = 3/199 (1%)

Query: 1   MSGDLYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDV 60
           M  D+ ++RPL+GG+ISS+FP RFQDVSNIRQVPDHQE FVDPSRDESLIFELLD K DV
Sbjct: 1   MPEDICTDRPLYGGSISSTFPVRFQDVSNIRQVPDHQEAFVDPSRDESLIFELLDLKPDV 60

Query: 61  GDNGSAAWFLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMAISKGRQG 120
            DNGSA WFLQDLA EQDA+G TL+EQSGVVE P     ++   VTTA+GQM ISK RQG
Sbjct: 61  NDNGSAVWFLQDLANEQDAQGFTLVEQSGVVEVP---IGNVSVVVTTAIGQMGISKARQG 117

Query: 121 REAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMS 180
           REAQN+V+VYLANLRLK VGTDVLV AYEP+LI+PLSESA+TVGAGLP PA QSGF+ M+
Sbjct: 118 REAQNVVQVYLANLRLKNVGTDVLVVAYEPILISPLSESAATVGAGLPAPAAQSGFLPMA 177

Query: 181 EVFKLAVSSFKVNDWSLFG 199
           EVFKLAVS+FKVNDW+LFG
Sbjct: 178 EVFKLAVSNFKVNDWNLFG 196

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18409343|ref|NP_564972.1| Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP-like protein [Arabidopsis thaliana] gi|14335134|gb|AAK59847.1| At1g69680/T6C23_12 [Arabidopsis thaliana] gi|18655341|gb|AAL76126.1| At1g69680/T6C23_12 [Arabidopsis thaliana] gi|21593600|gb|AAM65567.1| unknown [Arabidopsis thaliana] gi|332196841|gb|AEE34962.1| Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP-like protein [Arabidopsis thaliana]

 Score =  313 bits (802), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 149/202 (73%), Positives = 176/202 (87%)

Query: 1   MSGDLYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDV 60
           MS +L S RPLFGGAIS+ FP RFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFK +V
Sbjct: 1   MSVELCSVRPLFGGAISTVFPQRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKAEV 60

Query: 61  GDNGSAAWFLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMAISKGRQG 120
           GD GSA+WFL DLA+EQDAEG  L+EQS V+EAPGL ++++ A  TTA+G+MAISKGRQG
Sbjct: 61  GDIGSASWFLNDLASEQDAEGFQLIEQSEVIEAPGLSFRNISAVATTAIGEMAISKGRQG 120

Query: 121 REAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMS 180
           REAQN+V+VY+AN+RLK V TDVLVTAYEP+LINPLSESA  VG+GL VPA+QSG M M 
Sbjct: 121 REAQNLVRVYVANIRLKGVDTDVLVTAYEPILINPLSESADAVGSGLAVPASQSGKMPMC 180

Query: 181 EVFKLAVSSFKVNDWSLFGGTA 202
           ++ K ++S+FKVNDW+LFG +A
Sbjct: 181 DIIKQSLSTFKVNDWNLFGSSA 202

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297805022|ref|XP_002870395.1| hypothetical protein ARALYDRAFT_355491 [Arabidopsis lyrata subsp. lyrata] gi|297316231|gb|EFH46654.1| hypothetical protein ARALYDRAFT_355491 [Arabidopsis lyrata subsp. lyrata]

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 139/184 (75%), Positives = 159/184 (86%)

Query: 1   MSGDLYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDV 60
           MSG+L S RPLFGGAIS+ FP RFQDVSNIRQV DHQEVFVDPSRDESLIFELLDFK +V
Sbjct: 1   MSGELCSVRPLFGGAISTFFPQRFQDVSNIRQVSDHQEVFVDPSRDESLIFELLDFKTEV 60

Query: 61  GDNGSAAWFLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMAISKGRQG 120
           GD GSA+WFL DLA EQDAEG  L+EQS V+EAPGL ++++PA  TTA+G+MAISKGRQG
Sbjct: 61  GDIGSASWFLNDLAREQDAEGFLLIEQSEVIEAPGLSFRNIPAIGTTAIGEMAISKGRQG 120

Query: 121 REAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMS 180
           REAQN+V+VY+ANLRLK + TDVLVTAYEP+LINPLSES   VG+GL VPA+QSG M M 
Sbjct: 121 REAQNLVRVYVANLRLKGIDTDVLVTAYEPILINPLSESVDAVGSGLVVPASQSGIMPMC 180

Query: 181 EVFK 184
           +V K
Sbjct: 181 DVIK 184

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473364|ref|XP_002270902.2| PREDICTED: probable ran guanine nucleotide release factor-like [Vitis vinifera]

 Score =  280 bits (715), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 137/178 (76%), Positives = 152/178 (85%)

Query: 22  HRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWFLQDLATEQDAEG 81
           H + D   I       E FVDP+RDESL+FELLD K DV D+GSA WFLQDLATEQDAEG
Sbjct: 88  HEWFDTVAIDFESVRAEAFVDPTRDESLVFELLDLKQDVADDGSAVWFLQDLATEQDAEG 147

Query: 82  CTLLEQSGVVEAPGLRYKDLPATVTTAVGQMAISKGRQGREAQNIVKVYLANLRLKEVGT 141
            T++EQSGVVEA GLRY+++ A VTTAVGQMAISKGRQGREAQNIV+VYLANLRLKEVGT
Sbjct: 148 FTVIEQSGVVEAGGLRYRNMAAVVTTAVGQMAISKGRQGREAQNIVRVYLANLRLKEVGT 207

Query: 142 DVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMSEVFKLAVSSFKVNDWSLFG 199
           DVL+TAYEP+LINP S+SA TVGAGLPVPA QSG M M+EVFK+AVSSFKVNDWSLFG
Sbjct: 208 DVLITAYEPILINPFSDSAGTVGAGLPVPAEQSGHMPMTEVFKMAVSSFKVNDWSLFG 265

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
TAIR|locus:2205070	202	AT1G69680 "AT1G69680" [Arabido	0.990	1.0	0.737	1.5e-76
DICTYBASE|DDB_G0285871	195	DDB_G0285871 "Ran GTPase bindi	0.906	0.948	0.33	1.2e-19
UNIPROTKB|Q32PE2	186	RANGRF "Ran guanine nucleotide	0.867	0.951	0.335	3.7e-16
UNIPROTKB|F1MW14	186	RANGRF "Ran guanine nucleotide	0.857	0.940	0.338	7.7e-16
POMBASE|SPCC1840.01c	190	mog1 "Ran GTPase binding prote	0.897	0.963	0.282	1.1e-14
UNIPROTKB|Q9HD47	186	RANGRF "Ran guanine nucleotide	0.862	0.946	0.335	1.4e-14
UNIPROTKB|E2QYN1	194	RANGRF "Uncharacterized protei	0.862	0.907	0.335	1.8e-14
MGI|MGI:1889073	185	Rangrf "RAN guanine nucleotide	0.857	0.945	0.319	1.8e-14
UNIPROTKB|I3LP92	182	RANGRF "Uncharacterized protei	0.671	0.752	0.338	2.7e-13
ASPGD|ASPL0000097745	729	AN11730 [Emericella nidulans (	0.210	0.058	0.534	4.4e-08

TAIR|locus:2205070 AT1G69680 "AT1G69680" [Arabidopsis thaliana (taxid:3702)]

 Score = 771 (276.5 bits), Expect = 1.5e-76, P = 1.5e-76
 Identities = 149/202 (73%), Positives = 176/202 (87%)

Query:     1 MSGDLYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDV 60
             MS +L S RPLFGGAIS+ FP RFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFK +V
Sbjct:     1 MSVELCSVRPLFGGAISTVFPQRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKAEV 60

Query:    61 GDNGSAAWFLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMAISKGRQG 120
             GD GSA+WFL DLA+EQDAEG  L+EQS V+EAPGL ++++ A  TTA+G+MAISKGRQG
Sbjct:    61 GDIGSASWFLNDLASEQDAEGFQLIEQSEVIEAPGLSFRNISAVATTAIGEMAISKGRQG 120

Query:   121 REAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMS 180
             REAQN+V+VY+AN+RLK V TDVLVTAYEP+LINPLSESA  VG+GL VPA+QSG M M 
Sbjct:   121 REAQNLVRVYVANIRLKGVDTDVLVTAYEPILINPLSESADAVGSGLAVPASQSGKMPMC 180

Query:   181 EVFKLAVSSFKVNDWSLFGGTA 202
             ++ K ++S+FKVNDW+LFG +A
Sbjct:   181 DIIKQSLSTFKVNDWNLFGSSA 202

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0285871 DDB_G0285871 "Ran GTPase binding protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 66/200 (33%), Positives = 109/200 (54%)

Query:     4 DLYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDN 63
             + + +R L+GGAI    P RF DV++ R +PDHQE+F D   D+S+I EL +F+ D   N
Sbjct:     3 ETFEKRQLYGGAIEIDIPRRFIDVTSYRHIPDHQELFSDEKSDQSVIIELNEFQ-DHISN 61

Query:    64 GSAAWFLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLP---ATVTTAV--GQMAISKGR 118
              +A     ++  E DA   T  ++S ++    L   ++P   A++   V   Q  I+K  
Sbjct:    62 ANAIKHHYEVLVE-DAGIST--DKSVILNFRELTQAEMPNFDASIPKYVLLAQQKIAKFN 118

Query:   119 QGREAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQ 178
             +   A+N + +Y+A +RL++  TD+L+T  E + + P S S + V   L     QS   +
Sbjct:   119 E--TAENTINIYMALVRLEKSKTDLLITFNEAIALAPTSSSVAVV-QNLTPSNDQS---K 172

Query:   179 MSEVFKLAVSSFKVNDWSLF 198
               ++F   + SFK+ D+SLF
Sbjct:   173 SEQLFLTMLKSFKIKDYSLF 192

GO:0008536 "Ran GTPase binding" evidence=ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|Q32PE2 RANGRF "Ran guanine nucleotide release factor" [Bos taurus (taxid:9913)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 65/194 (33%), Positives = 101/194 (52%)

Query:     8 ERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAA 67
             + PLFGGA S++ P    DVS++R VPDHQEVF     D+SLI ELL+ +  V    +A 
Sbjct:     6 DNPLFGGAFSATLPPGAIDVSDLRPVPDHQEVFCHRVTDQSLIVELLELQAHVQGEEAAR 65

Query:    68 WFLQDLATEQDAEGCTL-LEQSGVVEAPGLRYKDLPATVTTAVGQMAISKGRQGREAQNI 126
             +  +D+   Q+A    +   Q  V+E   LR     A + +  GQ  ++K  Q  +    
Sbjct:    66 YHFEDVGGVQEARAVQVETVQPLVLEKLALRGCCQEAWILS--GQQQVAKENQ--QVAKY 121

Query:   127 VKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGA-GLPVPATQSGFMQMSEVFKL 185
             V ++ A LRL +  TD+L+T  +P    P  E+ S++G   L +P    G       F+ 
Sbjct:   122 VTLHQALLRLPQYQTDLLLTFNQP----P-PENRSSLGPENLSIPPWSLGD------FEQ 170

Query:   186 AVSSFKVNDWSLFG 199
              V+S  ++D ++FG
Sbjct:   171 LVTSLTLHDPNIFG 184

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|F1MW14 RANGRF "Ran guanine nucleotide release factor" [Bos taurus (taxid:9913)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 65/192 (33%), Positives = 100/192 (52%)

Query:    10 PLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWF 69
             PLFGGA S++ P    DVS++R VPDHQEVF     D+SLI ELL+ +  V    +A + 
Sbjct:     8 PLFGGAFSATLPPGAIDVSDLRPVPDHQEVFCHRVTDQSLIVELLELQAHVQGEEAARYH 67

Query:    70 LQDLATEQDAEGCTL-LEQSGVVEAPGLRYKDLPATVTTAVGQMAISKGRQGREAQNIVK 128
              +D+   Q+A    +   Q  V+E   LR     A + +  GQ  ++K  Q  +    V 
Sbjct:    68 FEDVGGVQEARAVQVETVQPLVLENLALRGCCQEAWILS--GQQQVAKENQ--QVAKYVT 123

Query:   129 VYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGA-GLPVPATQSGFMQMSEVFKLAV 187
             ++ A LRL +  TD+L+T  +P    P  E+ S++G   L +P    G       F+  V
Sbjct:   124 LHQALLRLPQYQTDLLLTFNQP----P-PENRSSLGPENLSIPPWSLGD------FEQLV 172

Query:   188 SSFKVNDWSLFG 199
             +S  ++D ++FG
Sbjct:   173 TSLTLHDPNIFG 184

GO:2000649 "regulation of sodium ion transmembrane transporter activity" evidence=IEA

GO:2000010 "positive regulation of protein localization to cell surface" evidence=IEA

GO:0044325 "ion channel binding" evidence=IEA

GO:0042391 "regulation of membrane potential" evidence=IEA

GO:0017080 "sodium channel regulator activity" evidence=IEA

POMBASE|SPCC1840.01c mog1 "Ran GTPase binding protein Mog1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 54/191 (28%), Positives = 99/191 (51%)

Query:    11 LFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDE-SLIFELLDFKLDVGDNGS-AAW 68
             LFGGA+ + FP +F D S +RQ+PD+QEVF+  S++  ++I ELL+ K++   +GS AA+
Sbjct:     4 LFGGALCADFPPKFLDASVLRQIPDNQEVFLQDSKENLTVIIELLE-KIEKPFDGSVAAY 62

Query:    69 FLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVG-QMAISKGRQGREAQNIV 127
                 +A + DA    +     + E      +   A+ ++  G Q  + KG++  E+   V
Sbjct:    63 HFNSIAFDNDASQRVIWRDKSLGEDDFEGMRSEKASGSSVQGCQRVLEKGKRNPESATNV 122

Query:   128 KVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMSEVFKLAV 187
              +++  + L +  TD++++   PL   P + S  +    +P P+ QS      E  +   
Sbjct:   123 AIFVNVITLIDFQTDIVISVNAPL---PNTSSVPSSVENIP-PSDQSIVRAALETIQRVT 178

Query:   188 SSFKVNDWSLF 198
              S  + D ++F
Sbjct:   179 RSLVLVDKTVF 189

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006606 "protein import into nucleus" evidence=ISO

GO:0007264 "small GTPase mediated signal transduction" evidence=IGI

GO:0008536 "Ran GTPase binding" evidence=ISO

GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=IMP

UNIPROTKB|Q9HD47 RANGRF "Ran guanine nucleotide release factor" [Homo sapiens (taxid:9606)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 64/191 (33%), Positives = 103/191 (53%)

Query:    10 PLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWF 69
             PLFGGA S+  P    DVS++R VPD+QEVF  P  D+SLI ELL+ +  V    +A + 
Sbjct:     8 PLFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRGEAAARYH 67

Query:    70 LQDLATEQDAEGCTLLE-QSGVVEAPGLRYKDLPATVTTAVGQMAISKGRQGREAQNIVK 128
              +D+   Q A    +   Q   +E   LR +   A V +  G+  I+K  Q + A+++  
Sbjct:    68 FEDVGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLS--GKQQIAKENQ-QVAKDVT- 123

Query:   129 VYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMSEVFKLAVS 188
             ++ A LRL +  TD+L+T  +P    P  ++ S++G     PA  S    + + F+  V+
Sbjct:   124 LHQALLRLPQYQTDLLLTFNQP----P-PDNRSSLGPENLSPAPWS----LGD-FEQLVT 173

Query:   189 SFKVNDWSLFG 199
             S  ++D ++FG
Sbjct:   174 SLTLHDPNIFG 184

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0044325 "ion channel binding" evidence=IPI

GO:2000649 "regulation of sodium ion transmembrane transporter activity" evidence=IDA

GO:0017080 "sodium channel regulator activity" evidence=IDA

GO:0042391 "regulation of membrane potential" evidence=IDA

GO:2000010 "positive regulation of protein localization to cell surface" evidence=IDA

GO:0014704 "intercalated disc" evidence=ISS

UNIPROTKB|E2QYN1 RANGRF "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 64/191 (33%), Positives = 94/191 (49%)

Query:    10 PLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWF 69
             PLFGGA S++ P    DVS++R VPD+QEVF     D+SLI ELL+ +  V    +A + 
Sbjct:    16 PLFGGAFSATLPPGALDVSDLRPVPDNQEVFCHRVTDQSLIVELLELQAHVQGEEAARYH 75

Query:    70 LQDLATEQDAEGCTLLE-QSGVVEAPGLRYKDLPATVTTAVGQMAISKGRQGREAQNIVK 128
              +D+   Q+A    +   Q  + E   LR     A V +   Q+A    ++  +    V 
Sbjct:    76 FEDVGGMQEARALQVDSVQPLLSENLALRSYCQEAWVLSGKQQVA----KENHQVAKDVM 131

Query:   129 VYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMSEVFKLAVS 188
             V+ A LRL    TDVLVT  EP   N LS     +     +P +   F Q+       V+
Sbjct:   132 VHQALLRLPRYQTDVLVTFNEPPPDNRLSLGPENLSL---LPWSLGDFEQL-------VT 181

Query:   189 SFKVNDWSLFG 199
             S  ++D ++FG
Sbjct:   182 SLTLHDPNIFG 192

GO:2000649 "regulation of sodium ion transmembrane transporter activity" evidence=IEA

GO:2000010 "positive regulation of protein localization to cell surface" evidence=IEA

GO:0044325 "ion channel binding" evidence=IEA

GO:0042391 "regulation of membrane potential" evidence=IEA

GO:0017080 "sodium channel regulator activity" evidence=IEA

MGI|MGI:1889073 Rangrf "RAN guanine nucleotide release factor" [Mus musculus (taxid:10090)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 61/191 (31%), Positives = 95/191 (49%)

Query:    10 PLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWF 69
             PLFGGA S+  P    DVS++R VPD+QEVF  P  D+SLI ELL+ +  V    +A + 
Sbjct:     8 PLFGGAFSAILPTGAIDVSDLRPVPDNQEVFCHPVTDQSLIIELLELQAHVQGEAAARYH 67

Query:    70 LQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMAISKGRQGREAQNIVKV 129
              +D+   Q A    +L    +     L  +       +  G+  ++K  Q + A+++  +
Sbjct:    68 FEDVGRVQGARAVHVLSVQPLC-LENLSLRGCCQDAWSLSGKQQVAKENQ-QVAKDVT-L 124

Query:   130 YLANLRLKEVGTDVLVTAYEPLLINPL-SESASTVGAGLPVPATQSGFMQMSEVFKLAVS 188
             + A LRL +  TD+L+T  +P    P  S S        P P + S F Q+       V+
Sbjct:   125 HQALLRLPQYQTDLLLTFNQP----PCHSRSLGPENLSCP-PWSLSNFEQL-------VT 172

Query:   189 SFKVNDWSLFG 199
             S  ++D +LFG
Sbjct:   173 SLTLHDPNLFG 183

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=TAS

GO:0008536 "Ran GTPase binding" evidence=IDA

GO:0014704 "intercalated disc" evidence=IDA

GO:0015031 "protein transport" evidence=IEA

GO:0017080 "sodium channel regulator activity" evidence=ISO

GO:0042391 "regulation of membrane potential" evidence=ISO

GO:0044325 "ion channel binding" evidence=ISO;IPI

GO:0050790 "regulation of catalytic activity" evidence=IDA

GO:2000010 "positive regulation of protein localization to cell surface" evidence=ISO

GO:2000649 "regulation of sodium ion transmembrane transporter activity" evidence=ISO

UNIPROTKB|I3LP92 RANGRF "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 48/142 (33%), Positives = 77/142 (54%)

Query:    10 PLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWF 69
             PLFGGA S++ P    DVS++R VPD+QEVF     D+SLI ELL+ +  V    +A + 
Sbjct:     8 PLFGGAFSATLPPGAIDVSDLRPVPDNQEVFCHRETDQSLIVELLELQAHVQGEEAARYH 67

Query:    70 LQDLATEQDAEGCTL-LEQSGVVEAPGLRYKDLPATVTTAVGQMAISKGRQGREAQNIVK 128
              +D+   Q+A    +   Q  ++E   LR     A + +   Q+A    ++ ++    V 
Sbjct:    68 FEDVGGVQEARAVQVEAVQPLLLENLALRGCCQEAWILSGKQQVA----KENQQVAKCVT 123

Query:   129 VYLANLRLKEVGTDVLVTAYEP 150
             ++ A LRL +  TD+L+T  +P
Sbjct:   124 LHQALLRLPQYQTDLLLTFNQP 145

GO:2000649 "regulation of sodium ion transmembrane transporter activity" evidence=IEA

GO:2000010 "positive regulation of protein localization to cell surface" evidence=IEA

GO:0044325 "ion channel binding" evidence=IEA

GO:0042391 "regulation of membrane potential" evidence=IEA

GO:0017080 "sodium channel regulator activity" evidence=IEA

ASPGD|ASPL0000097745 AN11730 [Emericella nidulans (taxid:162425)]

 Score = 129 (50.5 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
 Identities = 23/43 (53%), Positives = 33/43 (76%)

Query:    11 LFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFEL 53
             L+GGAI +  P R+ D S++RQ+PDHQE+F+ PS   +LIFE+
Sbjct:   510 LYGGAIKAIIPERWIDASSLRQIPDHQELFLSPSSLSNLIFEI 552

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9HD47	MOG1_HUMAN	No assigned EC number	0.3229	0.8578	0.9408	yes	no
Q9JIB0	MOG1_MOUSE	No assigned EC number	0.3298	0.8578	0.9459	yes	no
Q32PE2	MOG1_BOVIN	No assigned EC number	0.3264	0.8725	0.9569	yes	no
Q54ML6	MOG1_DICDI	No assigned EC number	0.3184	0.9117	0.9538	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: Al_scaffold_0002_1627 annotation not avaliable (202 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	204
cd00224	173	cd00224, Mog1, homolog to Ran-Binding Protein Mog1	1e-55
pfam04603	141	pfam04603, Mog1, Ran-interacting Mog1 protein	3e-26

>gnl|CDD|238137 cd00224, Mog1, homolog to Ran-Binding Protein Mog1p; binds to the small GTPase Ran, which plays an important role in nuclear import

 Score =  173 bits (441), Expect = 1e-55
 Identities = 66/192 (34%), Positives = 99/192 (51%), Gaps = 20/192 (10%)

Query: 9   RPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAW 68
            PLFGGA S+  P  F DVS++R VPD+QEVF  PS D+SLI ELL+ +  V D  +A +
Sbjct: 1   CPLFGGAFSAILPPGFIDVSDLRPVPDNQEVFCHPSTDQSLIVELLELQAHVRDEEAARY 60

Query: 69  FLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMAISKGRQG-REAQNIV 127
             +DLA+  DAEG   +     +   G                  +  G+Q  +E    V
Sbjct: 61  HFEDLASVNDAEG-VEVLSVQPLSLEGTSLTGC---------CAWLLSGKQENQEVAKDV 110

Query: 128 KVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMSEVFKLAV 187
            +++A +RL +  TD+L+T  +P       +S S+VG+ L  PA+          F+  V
Sbjct: 111 TIHVALIRLPQYQTDLLLTFNQPPP-----DSRSSVGSNLLSPAS----CWSLGDFEQLV 161

Query: 188 SSFKVNDWSLFG 199
           +S  ++D +LFG
Sbjct: 162 TSLTLHDPNLFG 173

Binding is independent of Ran's nucleotide state (RanGTP/RanGDP). Length = 173

>gnl|CDD|146982 pfam04603, Mog1, Ran-interacting Mog1 protein

 Score = 97.7 bits (243), Expect = 3e-26
 Identities = 50/144 (34%), Positives = 83/144 (57%), Gaps = 5/144 (3%)

Query: 9   RPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAW 68
            PLFGGA+S+  P +F DVS +RQ+PD+QEVF+  S D+S+I ELL+ +  V D  +A +
Sbjct: 2   VPLFGGALSAILPPKFLDVSVLRQIPDNQEVFLHDSTDQSVIVELLEKQEKVFDGSAARY 61

Query: 69  FLQDLATEQDAEGCTLLE-QSGVVEAPGLRYKDLPATVTTAVGQMAISKGRQGREAQNIV 127
             +D+A + DA    +   +   ++  GLR +   A       ++A    ++  E+   V
Sbjct: 62  HFEDVAFDNDASQRVVWSVKPLGLDDLGLRSECASAWSLQGCQRVA----KRNPESATNV 117

Query: 128 KVYLANLRLKEVGTDVLVTAYEPL 151
            +++A +RL +  TD+L+T   PL
Sbjct: 118 AIHVALIRLPQFQTDLLITFNAPL 141

Segregation of nuclear and cytoplasmic processes facilitates regulation of many eukaryotic cellular functions such as gene expression and cell cycle progression. Trafficking through the nuclear pore requires a number of highly conserved soluble factors that escort macromolecular substrates into and out of the nucleus. The Mog1 protein has been shown to interact with RanGTP which stimulates guanine nucleotide release, suggesting Mog1 regulates the nuclear transport functions of Ran. The human homologue of Mog1 is thought to be alternatively spliced. Length = 141

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	204
cd00224	173	Mog1 homolog to Ran-Binding Protein Mog1p; binds t	100.0
PF04603	141	Mog1: Ran-interacting Mog1 protein; InterPro: IPR0	100.0
KOG3329	185	consensus RAN guanine nucleotide release factor [S	100.0

>cd00224 Mog1 homolog to Ran-Binding Protein Mog1p; binds to the small GTPase Ran, which plays an important role in nuclear import

Probab=100.00  E-value=2.9e-60  Score=389.45  Aligned_cols=173  Identities=35%  Similarity=0.467  Sum_probs=139.8

Q ss_pred             cccccceeEeecCCCCccccCccccCCcceEEecCCCCceEEEEeecccCCCCchhHHHHHHHhhhccccCCCceEEeee
Q 028780            9 RPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWFLQDLATEQDAEGCTLLEQS   88 (204)
Q Consensus         9 ~~LyGGAIt~~lP~~fiDvS~lRqVPDnQEVFv~~~~d~SiIiElLE~v~~~~d~~A~~~Hf~dla~~N~~~~~~~i~~~   88 (204)
                      |+||||||++.||++|+|+|+|||||||||||+++++|+|||||||||+++++|.+|++|||+|||++|++.+ ..+++.
T Consensus         1 ~~LfGGAI~~~lP~~f~DvS~lRqVPDnQEVF~~~~~d~SiIiElLe~~~~~~d~~a~~~h~~dla~~n~~~~-~~v~~~   79 (173)
T cd00224           1 CPLFGGAFSAILPPGFIDVSDLRPVPDNQEVFCHPSTDQSLIVELLELQAHVRDEEAARYHFEDLASVNDAEG-VEVLSV   79 (173)
T ss_pred             CCccCceEEEeCCCcccchhcceeCCCCcEEEEcCCCCeEEEEEeeccccCCChHHHHHHHHHHHhccccCcc-eEEeec
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999976 556776


Q ss_pred             eeeccCCCCCCCCCceEEEEEeeeEeecCCCCcCCcceEEEEEEEEEcCCCCeeEEEEEeccCcCCCCcccccccCCCCC
Q 028780           89 GVVEAPGLRYKDLPATVTTAVGQMAISKGRQGREAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLP  168 (204)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~G~q~v~k~~~~~~~~~~V~i~l~liRL~~~~TDilIt~NvP~~~~~~s~~~~~~~~~~~  168 (204)
                      .+++....+....  .++.+.|+|    +++  +++++|.||||||||++++||||||+|+|+.   .++++..++... 
T Consensus        80 ~~~~~~~~~~~~~--~~~~~~g~q----~~~--~~~~~v~i~l~liRL~~~~TDilit~NvP~~---~~~~a~~~~~~~-  147 (173)
T cd00224          80 QPLSLEGTSLTGC--CAWLLSGKQ----ENQ--EVAKDVTIHVALIRLPQYQTDLLLTFNQPPP---DSRSSVGSNLLS-  147 (173)
T ss_pred             cccccCcccccce--eeEEeeccc----ccc--cCcCeeEEEEEEEECCCccccEEEEEecCCc---hhhhccCccccc-
Confidence            6665533222221  146666765    333  5678899999999999999999999999964   333333332211 


Q ss_pred             CCCcccccccHHHHHHHhhceeeEccCCCCC
Q 028780          169 VPATQSGFMQMSEVFKLAVSSFKVNDWSLFG  199 (204)
Q Consensus       169 ~~~~~~~~~~~~~~f~~i~~sf~V~D~~LF~  199 (204)
                          ..+. .++.+|++++.||+|+||||||
T Consensus       148 ----~~~~-~a~~~~~~~~~sf~V~D~~LFg  173 (173)
T cd00224         148 ----PASC-WSLGDFEQLVTSLTLHDPNLFG  173 (173)
T ss_pred             ----chhh-hHHHHHHHHhhEEEeecccccC
Confidence                1111 1578999999999999999997

Binding is independent of Ran's nucleotide state (RanGTP/RanGDP)

>PF04603 Mog1: Ran-interacting Mog1 protein; InterPro: IPR007681 Segregation of nuclear and cytoplasmic processes facilitates regulation of many eukaryotic cellular functions such as gene expression and cell cycle progression

Probab=100.00  E-value=2.1e-56  Score=355.71  Aligned_cols=140  Identities=43%  Similarity=0.667  Sum_probs=104.0

Q ss_pred             cccccceeEeecCCCCccccCccccCCcceEEecCCCCceEEEEeecccCCCCchhHHHHHHHhhhccccCCCceEEeee
Q 028780            9 RPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWFLQDLATEQDAEGCTLLEQS   88 (204)
Q Consensus         9 ~~LyGGAIt~~lP~~fiDvS~lRqVPDnQEVFv~~~~d~SiIiElLE~v~~~~d~~A~~~Hf~dla~~N~~~~~~~i~~~   88 (204)
                      |+||||||+|.||++|+|+|+|||||||||||+++++|+|||||||||+++.+|++|++|||+|||++|++.+ ..+++.
T Consensus         2 ~~LyGGAi~~~lP~~f~DvS~~RqVPD~QEVf~~~~~d~SiIielle~~~~~~d~~a~~~hf~dla~~n~a~~-~~i~~~   80 (141)
T PF04603_consen    2 RPLYGGAITCDLPSGFIDVSDFRQVPDNQEVFVDPSTDQSIIIELLERVEEVDDEEAARFHFEDLADDNDASS-STILSV   80 (141)
T ss_dssp             EEEGGGTEEEEE-TTEEEGGGTS---TTEEEEEE--S--EEEEEEEE--S--SHHHHHHHHHHHHHHCCTEEE-EE----
T ss_pred             ccccCceEEEeCCCCccchhhceeCCCCCEEeEeCCCCeEEEEEEecccCCCChHHHHHHHHHhhhcccCccc-eeeecc
Confidence            7899999999999999999999999999999999999999999999999999999999999999999999875 446666


Q ss_pred             eeeccCCCCCCCCCceEEEEEeeeEeecCCCCcCCcceEEEEEEEEEcCCCCeeEEEEEeccC
Q 028780           89 GVVEAPGLRYKDLPATVTTAVGQMAISKGRQGREAQNIVKVYLANLRLKEVGTDVLVTAYEPL  151 (204)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~G~q~v~k~~~~~~~~~~V~i~l~liRL~~~~TDilIt~NvP~  151 (204)
                      .+++...++.......++++.|.|+++|+++  ++++.|.||||||||++++||||||+|+|+
T Consensus        81 ~~l~~~~~~~~~~~~~~~~l~G~q~v~K~~~--~~~~~v~i~laliRL~~~~TDilIt~N~Pl  141 (141)
T PF04603_consen   81 EPLSEDQLGLPSECPSASVLVGTQKVAKFNE--EAANTVRIYLALIRLPEVSTDILITVNVPL  141 (141)
T ss_dssp             -EEEEEEEE-TTTEEEEEEEEEEETTS---T--TSS--EEEEEEEEEEGGGTEEEEEEEEEE-
T ss_pred             cccccccccCCCCCccEEEEEeccccccccc--cCCCeEEEEEEEEeCCCCCCeEEEEeccCC
Confidence            6665544433333456799999999999876  467899999999999999999999999995

Trafficking through the nuclear pore requires a number of highly conserved soluble factors that escort macromolecular substrates into and out of the nucleus. The Mog1 protein has been shown to interact with RanGTP, which stimulates guanine nucleotide release, suggesting Mog1 regulates the nuclear transport functions of Ran []. The human homologue of Mog1 is thought to be alternatively spliced.; PDB: 1JHS_A 1EQ6_A.

>KOG3329 consensus RAN guanine nucleotide release factor [Signal transduction mechanisms]

Probab=100.00  E-value=7.4e-49  Score=316.04  Aligned_cols=182  Identities=39%  Similarity=0.470  Sum_probs=137.8

Q ss_pred             CCCcccccccceeEeecCCCCccccCccccCCcceEEecCCCCceEEEEeecccCCCCchhHHHHHHHhhhccccCCCce
Q 028780            4 DLYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWFLQDLATEQDAEGCT   83 (204)
Q Consensus         4 ~~~~~~~LyGGAIt~~lP~~fiDvS~lRqVPDnQEVFv~~~~d~SiIiElLE~v~~~~d~~A~~~Hf~dla~~N~~~~~~   83 (204)
                      ++.+.+|||||||++.+|++|||||+|||||||||||+++++|+|+||||||.++++-|...+.|||+||+..+++....
T Consensus         2 e~~~~~pLfGGAisav~P~gfiDvS~LRqVPDnQEVfv~p~rDesli~eLle~~a~v~d~~~a~~~~n~~~~~q~a~e~~   81 (185)
T KOG3329|consen    2 EPTRDVPLFGGAISAVFPPGFIDVSDLRQVPDNQEVFVHPSRDESLIVELLELQAHVRDELEAVYHFNDLAAWQDAVEDL   81 (185)
T ss_pred             CcccccccccceeeeccCcccccHhhcccCCCCceEeecCCchHHHHHHHHhhhhhccchhhhhhhhhhHHHhhhhHhhh
Confidence            57788999999999999999999999999999999999999999999999999999999999999999999999865322


Q ss_pred             -EEeeeeeeccCCCCCCCCCceEEEEEee-eEeecCCCCcCCcceEEEEEEEEEcCCCCeeEEEEEeccCcCCCCccccc
Q 028780           84 -LLEQSGVVEAPGLRYKDLPATVTTAVGQ-MAISKGRQGREAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESAS  161 (204)
Q Consensus        84 -~i~~~~~~~~~~~~~~~~~~~~~~~~G~-q~v~k~~~~~~~~~~V~i~l~liRL~~~~TDilIt~NvP~~~~~~s~~~~  161 (204)
                       .+..+..++..++...  ...++...|. |.+.|.++. .++ .++.+..++||+++.||++||+|.|+.   .+++..
T Consensus        82 ~~~~~sl~~e~~~l~~r--~q~a~~t~~~~q~v~k~nkr-~~~-~~t~v~v~lrlpqfqtdlviS~Nap~p---~~~~~~  154 (185)
T KOG3329|consen   82 TESNQSLSWEALGLDGR--CQEAWVTSGKMQQVAKENKR-VAK-DVTLVQVLLRLPQFQTDLVISFNAPLP---DNSSSL  154 (185)
T ss_pred             hhhccccccccccccch--hhhhhhhhhHHHHHHHcCCc-cch-hhhhhhhhhcccccccceEEEecCCCc---chhhcc
Confidence             1222223332222222  2234555555 566655442 233 334555666999999999999999984   222111


Q ss_pred             ccCCCCCCCCcccccccHHHHHHHhhceeeEccCCCCC
Q 028780          162 TVGAGLPVPATQSGFMQMSEVFKLAVSSFKVNDWSLFG  199 (204)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~f~~i~~sf~V~D~~LF~  199 (204)
                      .       ++.+..+++++++|+++++||+++||+|||
T Consensus       155 ~-------pe~~S~~~~~l~~iqq~vrsl~l~D~nlFg  185 (185)
T KOG3329|consen  155 G-------PENQSPAPASLGDIQQLVRSLTLVDPNLFG  185 (185)
T ss_pred             C-------cccccccchHHHHHHHHhheEEeccccccC
Confidence            1       223445566899999999999999999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	204
1eq6_A	189	1.9 Angstrom Resolution Crystal Structure Of The Sa		4e-09
1jhs_A	188	Protein Mog1 E65a Mutant Length = 188		3e-08

>pdb|1EQ6|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of The Saccharomyces Cerevisiae Ran-Binding Protein Mog1p Length = 189

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 96/206 (46%), Gaps = 34/206 (16%)
Query: 7   SERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRD-----------ESLIFELLD 55
            E  L+GGAI++  P  F D S +R+VPD QEV+V+  RD           ES+I +LL+
Sbjct: 5   KEVELYGGAITTVVPPGFIDASTLREVPDTQEVYVNSRRDEEEFEDGLATNESIIVDLLE 64
Query: 56  FKLDVGDNGSAAWF-LQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMAI 114
             +D  D   A  F ++DL           L++  V +  G ++  L   V    G+  +
Sbjct: 65  -TVDKSDLKEAWQFHVEDLTELNGTTKWEALQEDTVQQ--GTKFTGLVMEVANKWGKPDL 121
Query: 115 SKGRQGREAQNIVKVYLANLRLKEVGTDVLVTAYEPLLIN-PLSESASTVGAGLPVPATQ 173
                   AQ +V + +A +RL +  TDV+++      IN PL++  ++  +   +PA  
Sbjct: 122 --------AQTVV-IGVALIRLTQFDTDVVIS------INVPLTKEEASQASNKELPARC 166
Query: 174 SGFMQMSEVFKLAVSSFKVNDWSLFG 199
               Q+    +  V  F V D SLF 
Sbjct: 167 HAVYQL---LQEMVRKFHVVDTSLFA 189

>pdb|1JHS|A Chain A, Protein Mog1 E65a Mutant Length = 188

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 95/206 (46%), Gaps = 34/206 (16%)
Query: 7   SERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRD-----------ESLIFELLD 55
            E  L+GGAI++  P  F D S +R+VPD Q V+V+  RD           ES+I +LL+
Sbjct: 4   KEVELYGGAITTVVPPGFIDASTLREVPDTQAVYVNSRRDEEEFEDGLATNESIIVDLLE 63
Query: 56  FKLDVGDNGSAAWF-LQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMAI 114
             +D  D   A  F ++DL           L++  V +  G ++  L   V    G+  +
Sbjct: 64  -TVDKSDLKEAWQFHVEDLTELNGTTKWEALQEDTVQQ--GTKFTGLVMEVANKWGKPDL 120
Query: 115 SKGRQGREAQNIVKVYLANLRLKEVGTDVLVTAYEPLLIN-PLSESASTVGAGLPVPATQ 173
                   AQ +V + +A +RL +  TDV+++      IN PL++  ++  +   +PA  
Sbjct: 121 --------AQTVV-IGVALIRLTQFDTDVVIS------INVPLTKEEASQASNKELPARC 165
Query: 174 SGFMQMSEVFKLAVSSFKVNDWSLFG 199
               Q+    +  V  F V D SLF 
Sbjct: 166 HAVYQL---LQEMVRKFHVVDTSLFA 188

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	204
1eq6_A	189	MOG1P; alpha-beta, protein transport; 1.90A {Sacch	2e-57

>1eq6_A MOG1P; alpha-beta, protein transport; 1.90A {Saccharomyces cerevisiae} SCOP: d.107.1.1 PDB: 1jhs_A Length = 189

 Score =  178 bits (453), Expect = 2e-57
 Identities = 46/205 (22%), Positives = 83/205 (40%), Gaps = 30/205 (14%)

Query: 6   YSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSR-----------DESLIFELL 54
             E  L+GGAI++  P  F D S +R+VPD QEV+V+  R           +ES+I +LL
Sbjct: 4   NKEVELYGGAITTVVPPGFIDASTLREVPDTQEVYVNSRRDEEEFEDGLATNESIIVDLL 63

Query: 55  DFKLDVGDNGSAAWFLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMAI 114
           +         +  + ++DL           L++  V +                   M +
Sbjct: 64  ETVDKSDLKEAWQFHVEDLTELNGTTKWEALQEDTVQQGT-----------KFTGLVMEV 112

Query: 115 SKGRQGREAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQS 174
           +      +    V + +A +RL +  TDV+++   PL     S++++            +
Sbjct: 113 ANKWGKPDLAQTVVIGVALIRLTQFDTDVVISINVPLTKEEASQASNKEL--------PA 164

Query: 175 GFMQMSEVFKLAVSSFKVNDWSLFG 199
               + ++ +  V  F V D SLF 
Sbjct: 165 RCHAVYQLLQEMVRKFHVVDTSLFA 189

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	204
d1jhsa_	188	d.107.1.1 (A:) Ran-binding protein mog1p {Baker's	5e-58

>d1jhsa_ d.107.1.1 (A:) Ran-binding protein mog1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: Ran-binding protein mog1p
domain: Ran-binding protein mog1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  178 bits (454), Expect = 5e-58
 Identities = 50/204 (24%), Positives = 86/204 (42%), Gaps = 30/204 (14%)

Query: 6   YSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSR-----------DESLIFELL 54
             E  L+GGAI++  P  F D S +R+VPD Q V+V+  R           +ES+I +LL
Sbjct: 3   NKEVELYGGAITTVVPPGFIDASTLREVPDTQAVYVNSRRDEEEFEDGLATNESIIVDLL 62

Query: 55  DFKLDVGDNGSAAWFLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMAI 114
           +         +  + ++DL           L++  V +             T  V ++A 
Sbjct: 63  ETVDKSDLKEAWQFHVEDLTELNGTTKWEALQEDTVQQGT---------KFTGLVMEVAN 113

Query: 115 SKGRQGREAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQS 174
             G+   +    V + +A +RL +  TDV+++   PL     S++       LP     +
Sbjct: 114 KWGKP--DLAQTVVIGVALIRLTQFDTDVVISINVPLTKEEASQA---SNKELP-----A 163

Query: 175 GFMQMSEVFKLAVSSFKVNDWSLF 198
               + ++ +  V  F V D SLF
Sbjct: 164 RCHAVYQLLQEMVRKFHVVDTSLF 187

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	204
d1jhsa_	188	Ran-binding protein mog1p {Baker's yeast (Saccharo	100.0

>d1jhsa_ d.107.1.1 (A:) Ran-binding protein mog1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: Ran-binding protein mog1p
domain: Ran-binding protein mog1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=0  Score=368.33  Aligned_cols=176  Identities=27%  Similarity=0.382  Sum_probs=135.4

Q ss_pred             CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEECC-----------CCCCEEEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf             885113445326821699872256763369962487639-----------999138998001247879623798999965
Q 028780            5 LYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDP-----------SRDESLIFELLDFKLDVGDNGSAAWFLQDL   73 (204)
Q Consensus         5 ~~~~~~LyGGAIt~~lP~~fiDvS~lRqVPDnQEVFv~~-----------~~d~SiIvEiLE~v~~~~d~~A~~~Hf~dl   73 (204)
                      .+++++||||||+|.||++|+|||+|||||||||||+|+           ++|+|||||||||+++.+|.+|++|||+||
T Consensus         2 ~~~e~~LfGGAI~~~lP~~f~DvS~~RqVPDnQEVFv~~~~~~~~~~~~~~~d~SiIvElLE~v~~~~d~~A~~~h~~Dl   81 (188)
T d1jhsa_           2 NNKEVELYGGAITTVVPPGFIDASTLREVPDTQAVYVNSRRDEEEFEDGLATNESIIVDLLETVDKSDLKEAWQFHVEDL   81 (188)
T ss_dssp             CCEEEEEGGGTEEEEECTTEEEGGGTSCCCTTEEEEEECCCSSCCCTTSCCSCCEEEEEEEECCSCCSHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEHHHCCCCCCHHHHHHHHHHHH
T ss_conf             85524255735898469873000043028998478545766653223567887349998424466668689999999875


Q ss_pred             HCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCCEEEEEEEECCCCC
Q ss_conf             11446788328733003205988778999317998745675149888677541899999997279882089998115757
Q 028780           74 ATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMAISKGRQGREAQNIVKVYLANLRLKEVGTDVLVTAYEPLLI  153 (204)
Q Consensus        74 a~~N~~~~~~~i~~~~~~~~~~~p~~~~~~~~~~~~G~q~v~k~~~~~~~~~~V~i~l~liRL~~~~TDilIt~NvP~~~  153 (204)
                      |+.|++..+..+... .+..       .+...++ ......++++  .+.+++|.|||+||||++++||||||+|+|+..
T Consensus        82 a~~n~~~~~~~~~~~-~~~~-------~~~~~~~-~~~~~~~~~~--~~~~~~v~i~l~liRL~~~~TDiLit~NvP~~~  150 (188)
T d1jhsa_          82 TELNGTTKWEALQED-TVQQ-------GTKFTGL-VMEVANKWGK--PDLAQTVVIGVALIRLTQFDTDVVISINVPLTK  150 (188)
T ss_dssp             HHTTTEEEEEEEEEE-EEET-------TTEEEEE-EEEEEETTSC--TTSSCCEEEEEEEEEEGGGTEEEEEEEEEECCH
T ss_pred             HCCCCCCCEEEEECC-CCCC-------CCCEEEE-EEEEEEECCC--CCCCCEEEEEEEEEECCCCCCEEEEEEECCCCC
T ss_conf             146887521476046-6656-------7751389-8884220377--687768999999997787573189999626886


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCEEEECCCCCCC
Q ss_conf             9886543345999988875555341899999865000570488999
Q 028780          154 NPLSESASTVGAGLPVPATQSGFMQMSEVFKLAVSSFKVNDWSLFG  199 (204)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~sf~V~D~sLF~  199 (204)
                      .+.+...  ..   ..+   .+...++++|+++++||+|+|||||+
T Consensus       151 ~~~~~~~--~~---~~~---~~~~~~~~~~~~~~~sf~V~Dw~LFa  188 (188)
T d1jhsa_         151 EEASQAS--NK---ELP---ARCHAVYQLLQEMVRKFHVVDTSLFA  188 (188)
T ss_dssp             HHHHHHH--TT---CCC---HHHHHHHHHHHHHHHHCEESCGGGGC
T ss_pred             CCCCCCC--CC---CCC---CHHHHHHHHHHHHHHEEEEECCCCCC
T ss_conf             5333344--33---343---10308999999996436833452559