Citrus Sinensis ID: 028802
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 203 | 2.2.26 [Sep-21-2011] | |||||||
| Q58DT8 | 382 | WD repeat-containing prot | yes | no | 0.743 | 0.395 | 0.447 | 7e-31 | |
| Q9CX97 | 388 | WD repeat-containing prot | yes | no | 0.699 | 0.365 | 0.454 | 2e-30 | |
| A1L112 | 384 | WD repeat-containing prot | yes | no | 0.699 | 0.369 | 0.454 | 3e-30 | |
| Q9H6Y2 | 383 | WD repeat-containing prot | yes | no | 0.699 | 0.370 | 0.447 | 5e-30 | |
| B2ZZS9 | 400 | WD repeat-containing prot | N/A | no | 0.822 | 0.417 | 0.394 | 1e-29 | |
| Q5R9T6 | 383 | WD repeat-containing prot | yes | no | 0.699 | 0.370 | 0.447 | 2e-29 | |
| Q54SA5 | 408 | WD repeat-containing prot | yes | no | 0.714 | 0.355 | 0.401 | 6e-28 | |
| Q6DRF9 | 387 | WD repeat-containing prot | yes | no | 0.699 | 0.366 | 0.412 | 1e-27 | |
| P0CS40 | 374 | WD repeat-containing prot | yes | no | 0.733 | 0.398 | 0.414 | 5e-25 | |
| P0CS41 | 374 | WD repeat-containing prot | N/A | no | 0.733 | 0.398 | 0.414 | 5e-25 |
| >sp|Q58DT8|WDR55_BOVIN WD repeat-containing protein 55 OS=Bos taurus GN=WDR55 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 133 bits (335), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 91/152 (59%), Gaps = 1/152 (0%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
M D LL SGDG L V N+++ + SE +LTSV LMK GRKV CGS GT
Sbjct: 174 MALDPDKKLLLTASGDGCLGVFNIKRRRFELLSEPQSGDLTSVTLMKYGRKVACGSSEGT 233
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+ L++W F SDRF L S+D ++ + E + GS +G+I V ILPNR++ + +
Sbjct: 234 IYLFNWDGFGATSDRFA-LRAESIDCMVPVTESLLCAGSTDGVIRAVNILPNRVVGSVGQ 292
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152
H+E P+E+LALSH FL S HD LK WD+
Sbjct: 293 HAEEPVENLALSHCGCFLASSGHDQRLKFWDM 324
|
Nucleolar protein that acts as a modulator of rRNA synthesis. Plays a central role during organogenesis. Bos taurus (taxid: 9913) |
| >sp|Q9CX97|WDR55_MOUSE WD repeat-containing protein 55 OS=Mus musculus GN=Wdr55 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 132 bits (331), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 90/143 (62%), Gaps = 1/143 (0%)
Query: 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69
LL SGDG L V N+++ + SE +LTSV LMK G+KV CGS GT+ L++W F
Sbjct: 184 LLTASGDGCLGVFNIKRRRFELLSEPQSGDLTSVALMKYGKKVACGSSEGTIYLFNWNGF 243
Query: 70 KDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESL 129
SDRF L S+D ++ + E+ + TGS +G+I V ILPNR++ + +H+ P+E+L
Sbjct: 244 GATSDRF-ALRAESIDCIVPVTENLLCTGSTDGIIRAVNILPNRVVGTVGQHAGEPVEAL 302
Query: 130 ALSHDRKFLGSISHDSMLKLWDL 152
ALSH FL S HD LK WD+
Sbjct: 303 ALSHCGHFLASSGHDQRLKFWDM 325
|
Nucleolar protein that acts as a modulator of rRNA synthesis. Plays a central role during organogenesis. Mus musculus (taxid: 10090) |
| >sp|A1L112|WDR55_RAT WD repeat-containing protein 55 OS=Rattus norvegicus GN=Wdr55 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 131 bits (330), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 89/143 (62%), Gaps = 1/143 (0%)
Query: 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69
LL SGDG L V N+++ + SE +LTSV LMK G+KV CGS GT+ L++W F
Sbjct: 183 LLTASGDGCLGVFNIKRRRFELLSEPQSGDLTSVALMKYGKKVACGSSEGTIYLFNWNGF 242
Query: 70 KDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESL 129
SDRF L S+D ++ + E+ + TGS +G+I V ILPNR++ + +H+ P+E L
Sbjct: 243 GATSDRF-ALRAESIDCMVPVTENLLCTGSTDGIIRAVNILPNRVVGTVGQHAGEPVEEL 301
Query: 130 ALSHDRKFLGSISHDSMLKLWDL 152
ALSH FL S HD LK WD+
Sbjct: 302 ALSHCGHFLASSGHDQRLKFWDM 324
|
Nucleolar protein that acts as a modulator of rRNA synthesis. Plays a central role during organogenesis. Rattus norvegicus (taxid: 10116) |
| >sp|Q9H6Y2|WDR55_HUMAN WD repeat-containing protein 55 OS=Homo sapiens GN=WDR55 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 130 bits (328), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 89/143 (62%), Gaps = 1/143 (0%)
Query: 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69
LL SGDG L + N+++ + SE +LTSV LMK G+KV CGS GT+ L++W F
Sbjct: 183 LLTASGDGCLGIFNIKRRRFELLSEPQSGDLTSVTLMKWGKKVACGSSEGTIYLFNWNGF 242
Query: 70 KDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESL 129
SDRF L S+D ++ + E + TGS +G+I V ILPNR++ + +H+ P+E L
Sbjct: 243 GATSDRFA-LRAESIDCMVPVTESLLCTGSTDGVIRAVNILPNRVVGSVGQHTGEPVEEL 301
Query: 130 ALSHDRKFLGSISHDSMLKLWDL 152
ALSH +FL S HD LK WD+
Sbjct: 302 ALSHCGRFLASSGHDQRLKFWDM 324
|
Nucleolar protein that acts as a modulator of rRNA synthesis. Plays a central role during organogenesis. Homo sapiens (taxid: 9606) |
| >sp|B2ZZS9|WDR55_ORYLA WD repeat-containing protein 55 OS=Oryzias latipes GN=wdr55 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 129 bits (324), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 102/170 (60%), Gaps = 3/170 (1%)
Query: 3 FAADAMK--LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
A D K LL TSGDGT+ V N+++ + SEF +LTSV LMK G+KVVCGS GT
Sbjct: 190 IAVDQAKRILLTTSGDGTMGVFNIKRRRFELLSEFQSGDLTSVALMKRGKKVVCGSSEGT 249
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
V +++W F SDRF + SVD ++ + + + T S +G I + +LPNR+I I +
Sbjct: 250 VYIFNWNGFGATSDRF-AVKAESVDCIVPITDSIMCTASMDGYIRAINLLPNRVIGCIGQ 308
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNNISQAAESD 170
H PIE + S D +FL S +HD ++K W++ ++ K + ++ + + D
Sbjct: 309 HVGEPIEEINKSWDSRFLVSCAHDQLIKFWEISNLQKTTVSDYRKRKKKD 358
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Nucleolar protein that acts as a modulator of rRNA synthesis. Plays a central role during organogenesis, including thymus development. Oryzias latipes (taxid: 8090) |
| >sp|Q5R9T6|WDR55_PONAB WD repeat-containing protein 55 OS=Pongo abelii GN=WDR55 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 129 bits (323), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 88/143 (61%), Gaps = 1/143 (0%)
Query: 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69
LL SGDG L V N+++ + SE +LTSV LMK G+KV CGS GT+ L++W F
Sbjct: 183 LLTASGDGCLGVFNIKRRRFELLSEPQSGDLTSVTLMKCGKKVACGSSEGTIYLFNWNGF 242
Query: 70 KDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESL 129
SDRF L S+D ++ + E + TGS +G+I V ILPNR++ + +H+ P+ L
Sbjct: 243 GATSDRFA-LRAESIDCMVPVTESLLCTGSTDGVIRAVNILPNRVVGSVGQHTGEPVGEL 301
Query: 130 ALSHDRKFLGSISHDSMLKLWDL 152
ALSH +FL S HD LK WD+
Sbjct: 302 ALSHCGRFLASSGHDQRLKFWDM 324
|
Nucleolar protein that acts as a modulator of rRNA synthesis. Plays a central role during organogenesis. Pongo abelii (taxid: 9601) |
| >sp|Q54SA5|WDR55_DICDI WD repeat-containing protein 55 homolog OS=Dictyostelium discoideum GN=wdr55 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 124 bits (310), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 96/147 (65%), Gaps = 2/147 (1%)
Query: 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65
D + TSGDG +S+ N + ++ SE S+ EL S + + NG+K+VCGSQ G++L+Y
Sbjct: 156 DDRHIAATSGDGGVSIYNFVRKSMDDISEKSDNELLSCLSLDNGQKLVCGSQDGSILIYD 215
Query: 66 WGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP 125
++ +F G P SVDAL+K++ + +GS +G+I +G+ P +++ + EHS +P
Sbjct: 216 RNNLENVK-KFAG-HPQSVDALVKVNNNTFFSGSSDGIIRFIGLRPKKLLGVVGEHSTFP 273
Query: 126 IESLALSHDRKFLGSISHDSMLKLWDL 152
IE +A+S D ++LGSISHD LK W++
Sbjct: 274 IERMAISRDNRYLGSISHDFSLKFWNV 300
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|Q6DRF9|WDR55_DANRE WD repeat-containing protein 55 OS=Danio rerio GN=wdr55 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/143 (41%), Positives = 87/143 (60%), Gaps = 1/143 (0%)
Query: 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69
LL +SGDGTL V N+++ + SE +LTSV +MK GRKVVCGS GT+ +++W F
Sbjct: 180 LLTSSGDGTLGVFNIKRRRFELLSEIQNGDLTSVSIMKRGRKVVCGSGEGTIYIFNWNGF 239
Query: 70 KDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESL 129
SDRF + SVD ++ + + + S +G+I + ILPNR++ I +H IE +
Sbjct: 240 GATSDRF-AVQAESVDCIVPITDSILCAASTDGVIRAINILPNRVVGSIGQHVGEAIEEI 298
Query: 130 ALSHDRKFLGSISHDSMLKLWDL 152
A D FL S +HD ++K WD+
Sbjct: 299 ARCRDTHFLASCAHDELIKFWDI 321
|
Nucleolar protein that acts as a modulator of rRNA synthesis. Plays a central role during organogenesis. Danio rerio (taxid: 7955) |
| >sp|P0CS40|JIP5_CRYNJ WD repeat-containing protein JIP5 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=JIP5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 114 bits (285), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 98/157 (62%), Gaps = 8/157 (5%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLR--KNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS 58
T+ D +L+ TSGDG LSV ++R K+T T SE E+EL S+V +K G+K + GS
Sbjct: 169 FTYFDDKRQLVATSGDGHLSVIDIRSNKSTPLTVSEDQEDELLSIVPIKGGQKAIVGS-- 226
Query: 59 GTVLLYSWGY---FKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRII 115
G +L W + D DR G P S+DA++ L D + TGSE+G+I ++ +LP++ +
Sbjct: 227 GLGILSVWNRQMGWADSVDRIPG-HPASIDAIVALTPDIIATGSEDGMIRVIQVLPHKFL 285
Query: 116 QPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152
+A H E+P+E + L + K+LGS+SHD LKL D+
Sbjct: 286 GVVATHEEFPVERIRLDRNNKWLGSVSHDECLKLTDV 322
|
Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684) |
| >sp|P0CS41|JIP5_CRYNB WD repeat-containing protein JIP5 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=JIP5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 114 bits (285), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 98/157 (62%), Gaps = 8/157 (5%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLR--KNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS 58
T+ D +L+ TSGDG LSV ++R K+T T SE E+EL S+V +K G+K + GS
Sbjct: 169 FTYFDDKRQLVATSGDGHLSVIDIRSNKSTPLTVSEDQEDELLSIVPIKGGQKAIVGS-- 226
Query: 59 GTVLLYSWGY---FKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRII 115
G +L W + D DR G P S+DA++ L D + TGSE+G+I ++ +LP++ +
Sbjct: 227 GLGILSVWNRQMGWADSVDRIPG-HPASIDAIVALTPDIIATGSEDGMIRVIQVLPHKFL 285
Query: 116 QPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152
+A H E+P+E + L + K+LGS+SHD LKL D+
Sbjct: 286 GVVATHEEFPVERIRLDRNNKWLGSVSHDECLKLTDV 322
|
Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 203 | ||||||
| 224079375 | 348 | predicted protein [Populus trichocarpa] | 1.0 | 0.583 | 0.745 | 1e-83 | |
| 357477601 | 420 | WD-40 repeat protein [Medicago truncatul | 0.995 | 0.480 | 0.700 | 2e-81 | |
| 217072834 | 359 | unknown [Medicago truncatula] | 0.995 | 0.562 | 0.695 | 4e-80 | |
| 388508106 | 359 | unknown [Medicago truncatula] gi|3885100 | 0.995 | 0.562 | 0.695 | 4e-80 | |
| 225463585 | 346 | PREDICTED: WD repeat-containing protein | 1.0 | 0.586 | 0.780 | 7e-80 | |
| 225433585 | 346 | PREDICTED: WD repeat-containing protein | 1.0 | 0.586 | 0.775 | 9e-79 | |
| 356544310 | 340 | PREDICTED: WD repeat-containing protein | 0.985 | 0.588 | 0.738 | 1e-78 | |
| 356534870 | 352 | PREDICTED: WD repeat-containing protein | 1.0 | 0.576 | 0.698 | 2e-77 | |
| 356577598 | 313 | PREDICTED: WD repeat-containing protein | 1.0 | 0.648 | 0.701 | 2e-77 | |
| 224065234 | 348 | predicted protein [Populus trichocarpa] | 0.995 | 0.580 | 0.688 | 4e-77 |
| >gi|224079375|ref|XP_002305841.1| predicted protein [Populus trichocarpa] gi|222848805|gb|EEE86352.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 314 bits (805), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 155/208 (74%), Positives = 181/208 (87%), Gaps = 5/208 (2%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
MTFA+D+MKLL TSGDGTLSVCNLR N +Q++SEFSEEEL SVV+MKNGRKV+CGSQ+GT
Sbjct: 141 MTFASDSMKLLSTSGDGTLSVCNLRSNKIQSQSEFSEEELLSVVIMKNGRKVICGSQNGT 200
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG+FKDCSDRF GLSPNS+DALLKLDEDRVITGSENGLISL+GILPNRIIQP+AE
Sbjct: 201 LLLYSWGFFKDCSDRFTGLSPNSIDALLKLDEDRVITGSENGLISLLGILPNRIIQPLAE 260
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNNIS-QAAESDSDGDDMDVD 179
HSEYPIE LA SHDRKFLGSISHD +LK+WDLDD+L+ S N + QAA SDSD D+MDVD
Sbjct: 261 HSEYPIEHLAFSHDRKFLGSISHDQVLKMWDLDDLLQNSVNAQNDQAAVSDSDSDEMDVD 320
Query: 180 NKV--TSKSASKG--HAGSSSNNFFADL 203
K + K A + +A ++++FFADL
Sbjct: 321 TKPPKSRKGAKRKNENANGAASSFFADL 348
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357477601|ref|XP_003609086.1| WD-40 repeat protein [Medicago truncatula] gi|355510141|gb|AES91283.1| WD-40 repeat protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 306 bits (785), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 152/217 (70%), Positives = 177/217 (81%), Gaps = 15/217 (6%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
+TFA+DAMK+L TSGDGTLSVCNLR+N VQ +SEFSE+EL SVVLMKNGRKVVCGSQ+G
Sbjct: 205 ITFASDAMKILATSGDGTLSVCNLRRNKVQAQSEFSEDELLSVVLMKNGRKVVCGSQTGI 264
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG FKDCSDRFV L+ NS+D +LKLDEDR+ITGSENG+I+LVGILPNRII+PIAE
Sbjct: 265 LLLYSWGCFKDCSDRFVDLASNSIDTMLKLDEDRIITGSENGMINLVGILPNRIIEPIAE 324
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNN-------ISQAAESDSDG 173
HSEYP+E LA SHDRKFLGSI HD MLKLWDLD+IL+GS + ++ +SD DG
Sbjct: 325 HSEYPVERLAFSHDRKFLGSIGHDQMLKLWDLDNILQGSRSTQRNETGVVANDGDSD-DG 383
Query: 174 DDMDVDNKVTS-------KSASKGHAGSSSNNFFADL 203
D+MDVDN + K+AS GHA SNNFFADL
Sbjct: 384 DEMDVDNSASKFSKGNKRKNASNGHAVGDSNNFFADL 420
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|217072834|gb|ACJ84777.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 303 bits (775), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 151/217 (69%), Positives = 175/217 (80%), Gaps = 15/217 (6%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
+TFA+DAMK+L TSGDGTLSVCNLR+N VQ +SEFSE+EL SVVLMKNGRKVVCGSQ+G
Sbjct: 144 ITFASDAMKILATSGDGTLSVCNLRRNKVQAQSEFSEDELLSVVLMKNGRKVVCGSQTGI 203
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG FKDCSDRFV L+ NS+D +LKLDE R+ITGSENG+I+LVGILPNRII+PIAE
Sbjct: 204 LLLYSWGCFKDCSDRFVDLASNSIDTMLKLDEGRIITGSENGMINLVGILPNRIIEPIAE 263
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNN-------ISQAAESDSDG 173
HSEYP+E LA SHDRKFLGSI HD MLKLWDLD+IL+GS + ++ +SD DG
Sbjct: 264 HSEYPVERLAFSHDRKFLGSIGHDQMLKLWDLDNILQGSRSTQRNETGVVANDGDSD-DG 322
Query: 174 DDMDVDNKV-------TSKSASKGHAGSSSNNFFADL 203
D+MDVDN K+AS GHA SNNFFADL
Sbjct: 323 DEMDVDNSAFKFSKGNRRKNASNGHAVGDSNNFFADL 359
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388508106|gb|AFK42119.1| unknown [Medicago truncatula] gi|388510080|gb|AFK43106.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 302 bits (774), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 151/217 (69%), Positives = 175/217 (80%), Gaps = 15/217 (6%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
+TFA+DAMK+L TSGDGTLSVCNLR+N VQ +SEFSE+EL SVVLMKNGRKVVCGSQ+G
Sbjct: 144 ITFASDAMKILATSGDGTLSVCNLRRNKVQAQSEFSEDELLSVVLMKNGRKVVCGSQTGI 203
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG FKDCSDRFV L+ NS+D +LKLDE R+ITGSENG+I+LVGILPNRII+PIAE
Sbjct: 204 LLLYSWGCFKDCSDRFVDLASNSIDTMLKLDEGRIITGSENGMINLVGILPNRIIEPIAE 263
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNN-------ISQAAESDSDG 173
HSEYP+E LA SHDRKFLGSI HD MLKLWDLD+IL+GS + ++ +SD DG
Sbjct: 264 HSEYPVERLAFSHDRKFLGSIGHDQMLKLWDLDNILQGSRSTQRNETGVVANDGDSD-DG 322
Query: 174 DDMDVDNKV-------TSKSASKGHAGSSSNNFFADL 203
D+MDVDN K+AS GHA SNNFFADL
Sbjct: 323 DEMDVDNSAFKFFKGNRRKNASNGHAVGDSNNFFADL 359
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225463585|ref|XP_002271081.1| PREDICTED: WD repeat-containing protein 55 [Vitis vinifera] gi|297743547|emb|CBI36414.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 302 bits (773), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 160/205 (78%), Positives = 183/205 (89%), Gaps = 2/205 (0%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
MTFA+D+MKLLG SGDGTLSVCNLR+N VQ +SEFSE+EL SVV+MKNGRKV+CG+QSG
Sbjct: 142 MTFASDSMKLLGVSGDGTLSVCNLRRNKVQVQSEFSEDELLSVVIMKNGRKVICGTQSGA 201
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG+FKDCSDRF+ LSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE
Sbjct: 202 LLLYSWGHFKDCSDRFIDLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 261
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNNI-SQAAESDSDGDDMDVD 179
HSEYP+E LA S DRK+LGSISHD MLKLWDLDD+L+GSG+ + SQ A +DSD D+MDVD
Sbjct: 262 HSEYPVERLAFSFDRKYLGSISHDQMLKLWDLDDLLQGSGSTLRSQEAMADSDSDEMDVD 321
Query: 180 NKVTS-KSASKGHAGSSSNNFFADL 203
K T K+AS G A +SS++FFADL
Sbjct: 322 AKETKRKTASNGQALNSSSSFFADL 346
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225433585|ref|XP_002269842.1| PREDICTED: WD repeat-containing protein 55 [Vitis vinifera] gi|298205166|emb|CBI17225.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 298 bits (763), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 159/205 (77%), Positives = 182/205 (88%), Gaps = 2/205 (0%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
MTFA+D+MKLLG SGDGTLSVCNLR+N VQ +SEFSE+EL SVVLMKNGRKV+CG+QSG
Sbjct: 142 MTFASDSMKLLGVSGDGTLSVCNLRRNKVQVQSEFSEDELLSVVLMKNGRKVICGTQSGA 201
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG+FKDCSDRF+ LSPNSVDALLKLDED VITGSENGLISLVGILPNRIIQPIAE
Sbjct: 202 LLLYSWGHFKDCSDRFIDLSPNSVDALLKLDEDSVITGSENGLISLVGILPNRIIQPIAE 261
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNNI-SQAAESDSDGDDMDVD 179
HSEYP+E LA S DRK+LGSISHD MLKLWDLDD+L+GSG+ + S+ A +DSD D+MDVD
Sbjct: 262 HSEYPVERLAFSFDRKYLGSISHDQMLKLWDLDDLLQGSGSTLRSREAMADSDSDEMDVD 321
Query: 180 NKVTS-KSASKGHAGSSSNNFFADL 203
K T K+AS G A +SS++FFADL
Sbjct: 322 AKETKRKTASNGQALNSSSSFFADL 346
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356544310|ref|XP_003540596.1| PREDICTED: WD repeat-containing protein 55-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 297 bits (761), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 150/203 (73%), Positives = 168/203 (82%), Gaps = 3/203 (1%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
+TFA+DAMKLL TSGDGTLSVCNLR+NTVQ RSEFSE+EL SVVLMKNGRKVVCGSQ+G
Sbjct: 141 ITFASDAMKLLATSGDGTLSVCNLRRNTVQARSEFSEDELLSVVLMKNGRKVVCGSQTGI 200
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG FKDCSDRF LS NS+DA+LKLDEDR+ITGSENG+I+LVGILPNR+IQPIAE
Sbjct: 201 ILLYSWGCFKDCSDRFTDLSSNSIDAMLKLDEDRIITGSENGIINLVGILPNRVIQPIAE 260
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNNISQAAESDSDGDDMDVDN 180
HSEYP+E LA SHDRKFLGSI+HD MLKLWDLD+IL GS N +Q ES D D +
Sbjct: 261 HSEYPVECLAFSHDRKFLGSIAHDQMLKLWDLDNILPGSRN--TQTNESGVIDSDDDEMD 318
Query: 181 KVTSKSASKGHAGSSSNNFFADL 203
+K GHA SNNFFADL
Sbjct: 319 VDGNKR-KNGHAVGGSNNFFADL 340
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534870|ref|XP_003535974.1| PREDICTED: WD repeat-containing protein 55-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 148/212 (69%), Positives = 170/212 (80%), Gaps = 9/212 (4%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
MTF +DAMKLL TSGDGTLSVCNLR+N VQ +SEFSE+EL SVVLMKNGRKVVCGSQ+G
Sbjct: 141 MTFVSDAMKLLATSGDGTLSVCNLRRNKVQAQSEFSEDELLSVVLMKNGRKVVCGSQTGV 200
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG FKDCSDRF LS NS+DA+LKLDEDR+ITGSENG+I+LVGILPNR+IQPIAE
Sbjct: 201 ILLYSWGCFKDCSDRFTDLSSNSIDAMLKLDEDRIITGSENGIINLVGILPNRVIQPIAE 260
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNNISQAA---------ESDS 171
HSEYP+E LA SHD+KFLGSI+HD MLKLWDLD+IL+GSGN A E D
Sbjct: 261 HSEYPVECLAFSHDKKFLGSIAHDQMLKLWDLDNILQGSGNTQRNEAGGAVDSDDDEMDL 320
Query: 172 DGDDMDVDNKVTSKSASKGHAGSSSNNFFADL 203
D D ++ K+A+ G+A SNNFFADL
Sbjct: 321 DDDPSKINKGNKRKNANNGNALGGSNNFFADL 352
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356577598|ref|XP_003556911.1| PREDICTED: WD repeat-containing protein 55-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 293 bits (751), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 148/211 (70%), Positives = 169/211 (80%), Gaps = 8/211 (3%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
+TF +DAMKLL TSGDGTLSVCNLR+N VQ +SEFSE+EL SVVLMKNGRKVVCGSQ+G
Sbjct: 103 ITFVSDAMKLLATSGDGTLSVCNLRRNKVQAQSEFSEDELLSVVLMKNGRKVVCGSQTGI 162
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG FKDCSDRF LS NS+DA+LKLDEDR+ITGSEN +I+LVGILPNR+IQPIAE
Sbjct: 163 ILLYSWGCFKDCSDRFTDLSSNSIDAMLKLDEDRIITGSENRIINLVGILPNRVIQPIAE 222
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNNISQAAESDSDGDDMDVDN 180
HSEYP+E LA SHDRKFLGSISHD MLKLWDLD+IL+GSGN S A + DD +
Sbjct: 223 HSEYPVECLAFSHDRKFLGSISHDQMLKLWDLDNILQGSGNTQSNEAGAVDSDDDEMDLD 282
Query: 181 KVTS--------KSASKGHAGSSSNNFFADL 203
S K+A+ G+A SNNFFADL
Sbjct: 283 DDPSKNSKGNKRKNANNGNALGGSNNFFADL 313
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224065234|ref|XP_002301730.1| predicted protein [Populus trichocarpa] gi|222843456|gb|EEE81003.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 292 bits (748), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 144/209 (68%), Positives = 169/209 (80%), Gaps = 7/209 (3%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
MTFA+D+MKLL TSGDGTLSVCNLR N +Q++SEFSEEEL SVV+MKNGRKV+CGSQ+GT
Sbjct: 141 MTFASDSMKLLSTSGDGTLSVCNLRTNKIQSQSEFSEEELLSVVIMKNGRKVICGSQNGT 200
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG+FKDCSDRF LSPNS+D LLKLDEDRVITGSENGLISL+GILPNR+IQP+AE
Sbjct: 201 LLLYSWGFFKDCSDRFTALSPNSIDTLLKLDEDRVITGSENGLISLLGILPNRVIQPLAE 260
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNNISQAAESDSDGDDMDVDN 180
HSEYPIE LA SHDRK+LGSISHD +LK+WDLDD+L+ SGN + A D +
Sbjct: 261 HSEYPIECLAFSHDRKYLGSISHDQVLKMWDLDDLLQNSGNAQNDQAPVSDSDSDAMDMD 320
Query: 181 KVTSKSASKG------HAGSSSNNFFADL 203
KS KG HA ++++FFADL
Sbjct: 321 TKPPKS-RKGAKRKNEHANDATSSFFADL 348
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 203 | ||||||
| TAIR|locus:2040804 | 353 | WDR55 "AT2G34260" [Arabidopsis | 0.822 | 0.473 | 0.754 | 9.4e-66 | |
| UNIPROTKB|Q58DT8 | 382 | WDR55 "WD repeat-containing pr | 0.743 | 0.395 | 0.447 | 3e-30 | |
| MGI|MGI:1915186 | 388 | Wdr55 "WD repeat domain 55" [M | 0.729 | 0.381 | 0.453 | 3.8e-30 | |
| RGD|1305640 | 384 | Wdr55 "WD repeat domain 55" [R | 0.729 | 0.385 | 0.453 | 4.9e-30 | |
| UNIPROTKB|G3V1J0 | 222 | WDR55 "WD repeat domain 55, is | 0.714 | 0.653 | 0.455 | 1e-29 | |
| UNIPROTKB|Q9H6Y2 | 383 | WDR55 "WD repeat-containing pr | 0.714 | 0.378 | 0.455 | 1e-29 | |
| UNIPROTKB|B2ZZS9 | 400 | wdr55 "WD repeat-containing pr | 0.753 | 0.382 | 0.423 | 2.1e-29 | |
| UNIPROTKB|Q5R9T6 | 383 | WDR55 "WD repeat-containing pr | 0.714 | 0.378 | 0.455 | 3.4e-29 | |
| UNIPROTKB|J9P876 | 854 | IK "Uncharacterized protein" [ | 0.743 | 0.176 | 0.441 | 1.2e-28 | |
| UNIPROTKB|F1RGE2 | 873 | LOC100738153 "Uncharacterized | 0.714 | 0.166 | 0.462 | 1.7e-28 |
| TAIR|locus:2040804 WDR55 "AT2G34260" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
Identities = 129/171 (75%), Positives = 153/171 (89%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
MTFA+D+MKL+ TSGDGTLSVCNLR + VQ++SEFSE+EL SVV+MKNGRKV+CG+Q+GT
Sbjct: 141 MTFASDSMKLVVTSGDGTLSVCNLRTSKVQSQSEFSEDELLSVVIMKNGRKVICGTQNGT 200
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG+FKDCSDRFV L+PNSVDALLKLDEDR+ITG +NG+ISLVGILPNRIIQPI
Sbjct: 201 LLLYSWGFFKDCSDRFVDLAPNSVDALLKLDEDRLITGCDNGIISLVGILPNRIIQPIGS 260
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG---NNISQAAE 168
H +YPIE LALSHD+KFLGS +HDSMLKLW+L++IL+GS N S AAE
Sbjct: 261 H-DYPIEDLALSHDKKFLGSTAHDSMLKLWNLEEILEGSNVNSGNASGAAE 310
|
|
| UNIPROTKB|Q58DT8 WDR55 "WD repeat-containing protein 55" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
Identities = 68/152 (44%), Positives = 91/152 (59%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
M D LL SGDG L V N+++ + SE +LTSV LMK GRKV CGS GT
Sbjct: 174 MALDPDKKLLLTASGDGCLGVFNIKRRRFELLSEPQSGDLTSVTLMKYGRKVACGSSEGT 233
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+ L++W F SDRF L S+D ++ + E + GS +G+I V ILPNR++ + +
Sbjct: 234 IYLFNWDGFGATSDRFA-LRAESIDCMVPVTESLLCAGSTDGVIRAVNILPNRVVGSVGQ 292
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152
H+E P+E+LALSH FL S HD LK WD+
Sbjct: 293 HAEEPVENLALSHCGCFLASSGHDQRLKFWDM 324
|
|
| MGI|MGI:1915186 Wdr55 "WD repeat domain 55" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 68/150 (45%), Positives = 94/150 (62%)
Query: 7 AMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65
A KLL T SGDG L V N+++ + SE +LTSV LMK G+KV CGS GT+ L++
Sbjct: 180 AKKLLLTASGDGCLGVFNIKRRRFELLSEPQSGDLTSVALMKYGKKVACGSSEGTIYLFN 239
Query: 66 WGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP 125
W F SDRF L S+D ++ + E+ + TGS +G+I V ILPNR++ + +H+ P
Sbjct: 240 WNGFGATSDRFA-LRAESIDCIVPVTENLLCTGSTDGIIRAVNILPNRVVGTVGQHAGEP 298
Query: 126 IESLALSHDRKFLGSISHDSMLKLWDLDDI 155
+E+LALSH FL S HD LK WD+ +
Sbjct: 299 VEALALSHCGHFLASSGHDQRLKFWDMTQL 328
|
|
| RGD|1305640 Wdr55 "WD repeat domain 55" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 68/150 (45%), Positives = 93/150 (62%)
Query: 7 AMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65
A KLL T SGDG L V N+++ + SE +LTSV LMK G+KV CGS GT+ L++
Sbjct: 179 AKKLLLTASGDGCLGVFNIKRRRFELLSEPQSGDLTSVALMKYGKKVACGSSEGTIYLFN 238
Query: 66 WGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP 125
W F SDRF L S+D ++ + E+ + TGS +G+I V ILPNR++ + +H+ P
Sbjct: 239 WNGFGATSDRFA-LRAESIDCMVPVTENLLCTGSTDGIIRAVNILPNRVVGTVGQHAGEP 297
Query: 126 IESLALSHDRKFLGSISHDSMLKLWDLDDI 155
+E LALSH FL S HD LK WD+ +
Sbjct: 298 VEELALSHCGHFLASSGHDQRLKFWDMTQL 327
|
|
| UNIPROTKB|G3V1J0 WDR55 "WD repeat domain 55, isoform CRA_b" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 67/147 (45%), Positives = 92/147 (62%)
Query: 7 AMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65
A KLL T SGDG L + N+++ + SE +LTSV LMK G+KV CGS GT+ L++
Sbjct: 18 AKKLLLTASGDGCLGIFNIKRRRFELLSEPQSGDLTSVTLMKWGKKVACGSSEGTIYLFN 77
Query: 66 WGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP 125
W F SDRF L S+D ++ + E + TGS +G+I V ILPNR++ + +H+ P
Sbjct: 78 WNGFGATSDRFA-LRAESIDCMVPVTESLLCTGSTDGVIRAVNILPNRVVGSVGQHTGEP 136
Query: 126 IESLALSHDRKFLGSISHDSMLKLWDL 152
+E LALSH +FL S HD LK WD+
Sbjct: 137 VEELALSHCGRFLASSGHDQRLKFWDM 163
|
|
| UNIPROTKB|Q9H6Y2 WDR55 "WD repeat-containing protein 55" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 67/147 (45%), Positives = 92/147 (62%)
Query: 7 AMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65
A KLL T SGDG L + N+++ + SE +LTSV LMK G+KV CGS GT+ L++
Sbjct: 179 AKKLLLTASGDGCLGIFNIKRRRFELLSEPQSGDLTSVTLMKWGKKVACGSSEGTIYLFN 238
Query: 66 WGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP 125
W F SDRF L S+D ++ + E + TGS +G+I V ILPNR++ + +H+ P
Sbjct: 239 WNGFGATSDRFA-LRAESIDCMVPVTESLLCTGSTDGVIRAVNILPNRVVGSVGQHTGEP 297
Query: 126 IESLALSHDRKFLGSISHDSMLKLWDL 152
+E LALSH +FL S HD LK WD+
Sbjct: 298 VEELALSHCGRFLASSGHDQRLKFWDM 324
|
|
| UNIPROTKB|B2ZZS9 wdr55 "WD repeat-containing protein 55" [Oryzias latipes (taxid:8090)] | Back alignment and assigned GO terms |
|---|
Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
Identities = 66/156 (42%), Positives = 96/156 (61%)
Query: 4 AADAMK--LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTV 61
A D K LL TSGDGT+ V N+++ + SEF +LTSV LMK G+KVVCGS GTV
Sbjct: 191 AVDQAKRILLTTSGDGTMGVFNIKRRRFELLSEFQSGDLTSVALMKRGKKVVCGSSEGTV 250
Query: 62 LLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEH 121
+++W F SDRF + SVD ++ + + + T S +G I + +LPNR+I I +H
Sbjct: 251 YIFNWNGFGATSDRFA-VKAESVDCIVPITDSIMCTASMDGYIRAINLLPNRVIGCIGQH 309
Query: 122 SEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157
PIE + S D +FL S +HD ++K W++ ++ K
Sbjct: 310 VGEPIEEINKSWDSRFLVSCAHDQLIKFWEISNLQK 345
|
|
| UNIPROTKB|Q5R9T6 WDR55 "WD repeat-containing protein 55" [Pongo abelii (taxid:9601)] | Back alignment and assigned GO terms |
|---|
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 67/147 (45%), Positives = 91/147 (61%)
Query: 7 AMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65
A KLL T SGDG L V N+++ + SE +LTSV LMK G+KV CGS GT+ L++
Sbjct: 179 AKKLLLTASGDGCLGVFNIKRRRFELLSEPQSGDLTSVTLMKCGKKVACGSSEGTIYLFN 238
Query: 66 WGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP 125
W F SDRF L S+D ++ + E + TGS +G+I V ILPNR++ + +H+ P
Sbjct: 239 WNGFGATSDRFA-LRAESIDCMVPVTESLLCTGSTDGVIRAVNILPNRVVGSVGQHTGEP 297
Query: 126 IESLALSHDRKFLGSISHDSMLKLWDL 152
+ LALSH +FL S HD LK WD+
Sbjct: 298 VGELALSHCGRFLASSGHDQRLKFWDM 324
|
|
| UNIPROTKB|J9P876 IK "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 329 (120.9 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 68/154 (44%), Positives = 92/154 (59%)
Query: 4 AADAMK--LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTV 61
A D K LL SGDG L V N+R+ + SE +LTSV LMK G+KV CGS GT+
Sbjct: 646 ALDPSKKLLLTASGDGCLGVFNIRRRRFELLSEPQSGDLTSVTLMKYGKKVACGSSEGTI 705
Query: 62 LLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEH 121
L++W F SDRF L S+D ++ + E + TGS +G+I V ILPNR++ + +H
Sbjct: 706 YLFNWNGFGATSDRFA-LRAESIDCMVPVTESLLCTGSTDGVIRAVNILPNRVVGSVGQH 764
Query: 122 SEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155
+ P+E LALSH FL S HD LK W++ +
Sbjct: 765 AGEPVEKLALSHCTHFLASSGHDQRLKFWNMSQL 798
|
|
| UNIPROTKB|F1RGE2 LOC100738153 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 328 (120.5 bits), Expect = 1.7e-28, P = 1.7e-28
Identities = 68/147 (46%), Positives = 92/147 (62%)
Query: 7 AMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65
A KLL T SGDG L V N+++ + SE +LTSV LMK G+KVVCGS GT+ L++
Sbjct: 668 AKKLLLTASGDGCLGVFNIKRRRFELLSEPQSGDLTSVTLMKCGKKVVCGSSEGTIYLFN 727
Query: 66 WGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP 125
W F SDRF L S+D ++ + E + GS +G+I V ILPNR++ + +H+ P
Sbjct: 728 WNGFGATSDRFA-LRAESIDCMVPVTESLLCAGSTDGVIRAVHILPNRVVGSVGQHAGEP 786
Query: 126 IESLALSHDRKFLGSISHDSMLKLWDL 152
+E LALSH +FL S HD LK WD+
Sbjct: 787 VEKLALSHCGRFLASSGHDQRLKFWDM 813
|
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | estExt_fgenesh4_pm.C_LG_IV0224 | hypothetical protein (348 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | gw1.XII.1370.1 | hypothetical protein (314 aa) | • | 0.499 | |||||||
 | gw1.IV.3052.1 | hypothetical protein (207 aa) | • | 0.493 | |||||||
 | gw1.5330.2.1 | annotation not avaliable (237 aa) | • | 0.493 | |||||||
 | eugene3.00140830 | hypothetical protein (166 aa) | • | 0.492 | |||||||
 | estExt_Genewise1_v1.C_LG_II1951 | hypothetical protein (332 aa) | • | 0.492 | |||||||
 | gw1.X.5093.1 | hypothetical protein (378 aa) | • | 0.490 | |||||||
 | gw1.XII.1842.1 | hypothetical protein (346 aa) | • | 0.489 | |||||||
 | gw1.IX.47.1 | hypothetical protein (385 aa) | • | 0.488 | |||||||
 | gw1.VIII.402.1 | hypothetical protein (356 aa) | • | 0.487 | |||||||
 | eugene3.00030383 | hypothetical protein (239 aa) | • | 0.486 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 203 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-10 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-08 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-06 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-05 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-05 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 3e-10
Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 4/154 (2%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
+ F+ D L SGDGT+ V +L + + + V +G + GS T
Sbjct: 15 VAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKT 74
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGS-ENGLISLVGILPNRIIQPIA 119
+ L+ +C G + V ++ + R+++ S + I + + + + +
Sbjct: 75 IRLWDLE-TGECVRTLTG-HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR 132
Query: 120 EHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153
H++ + S+A S D F+ S S D +KLWDL
Sbjct: 133 GHTD-WVNSVAFSPDGTFVASSSQDGTIKLWDLR 165
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-08
Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 4/143 (2%)
Query: 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69
+ +S DGT+ + +LR E+ SV +G K++ S GT+ L+
Sbjct: 150 VASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWD-LST 208
Query: 70 KDCSDRFVGLSPNSVDALLKLDEDRVIT-GSENGLISLVGILPNRIIQPIAEHSEYPIES 128
C G N V+++ + ++ GSE+G I + + +Q ++ H+ + S
Sbjct: 209 GKCLGTLRG-HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTN-SVTS 266
Query: 129 LALSHDRKFLGSISHDSMLKLWD 151
LA S D K L S S D +++WD
Sbjct: 267 LAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-06
Identities = 35/153 (22%), Positives = 66/153 (43%), Gaps = 8/153 (5%)
Query: 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFS--EEELTSVVLMKNGRKVVCGSQSGTVL 62
AD L S D T+ + +L + + ++SV +GR + S+ T+
Sbjct: 61 ADGTYLASGSSDKTIRLWDLETG--ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIK 118
Query: 63 LYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVIT-GSENGLISLVGILPNRIIQPIAEH 121
++ K C G + + V+++ + + S++G I L + + + + H
Sbjct: 119 VWDVETGK-CLTTLRGHT-DWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH 176
Query: 122 SEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154
+ + S+A S D + L S S D +KLWDL
Sbjct: 177 TG-EVNSVAFSPDGEKLLSSSSDGTIKLWDLST 208
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 6/146 (4%)
Query: 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69
L +S D T+ V ++ T + + SV +G V SQ GT+ L+
Sbjct: 108 LSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG 167
Query: 70 KDCSDRFVGLSP--NSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIE 127
K C G + NSV D +++++ S +G I L + + + + H E +
Sbjct: 168 K-CVATLTGHTGEVNSVAFSP--DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH-ENGVN 223
Query: 128 SLALSHDRKFLGSISHDSMLKLWDLD 153
S+A S D L S S D +++WDL
Sbjct: 224 SVAFSPDGYLLASGSEDGTIRVWDLR 249
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.9 bits (102), Expect = 2e-05
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 2/145 (1%)
Query: 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRK-VVCGSQSGTVLLYSWGY 68
G+S DGT+ + +LR + + ++S+ +G + GS GT+ L+
Sbjct: 171 ASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST 230
Query: 69 FKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIES 128
K G S + V + D + +GS +G I L + + + + S
Sbjct: 231 GKLLRSTLSGHSDSVVSSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLS 289
Query: 129 LALSHDRKFLGSISHDSMLKLWDLD 153
+A S D K L S S D ++LWDL+
Sbjct: 290 VAFSPDGKLLASGSSDGTVRLWDLE 314
|
Length = 466 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 203 | |||
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.97 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.97 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.97 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.97 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.97 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.97 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.96 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.96 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.96 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.95 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.95 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.95 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.95 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.94 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.94 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.94 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.94 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.93 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.93 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.92 | |
| PTZ00420 | 568 | coronin; Provisional | 99.92 | |
| PTZ00421 | 493 | coronin; Provisional | 99.92 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.92 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.92 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.92 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.92 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.92 | |
| PTZ00420 | 568 | coronin; Provisional | 99.91 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.91 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.91 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.91 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.9 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.9 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.9 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.9 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.9 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.9 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.9 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.9 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.9 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.89 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.89 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.89 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.89 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.89 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.89 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.89 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.89 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.89 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.89 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.89 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.88 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.88 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.88 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.88 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.88 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.88 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.88 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.88 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.87 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.87 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.87 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.87 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.87 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.87 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.87 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.87 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.87 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.87 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.87 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.86 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.86 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.86 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.85 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.85 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.85 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.85 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.84 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.84 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.83 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.83 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.83 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.83 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.83 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.82 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.82 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.82 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.82 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.81 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.81 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.81 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.8 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.8 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.8 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.79 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.79 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.78 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.78 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.78 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.78 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.78 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.77 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.76 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.76 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.76 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.76 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.75 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.75 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.75 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.75 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.75 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.75 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.74 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.74 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.73 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.72 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.72 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.71 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.71 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.71 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.71 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.71 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.7 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.7 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.7 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.69 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.69 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.69 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.68 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.68 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.68 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.67 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.66 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.66 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.65 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.64 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.63 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.63 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.63 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.63 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.62 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.62 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.62 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.62 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.61 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.61 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.6 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.6 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.58 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.58 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.58 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.57 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.57 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.56 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.56 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.54 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.54 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.54 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.54 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.54 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.54 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.54 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.54 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.53 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.53 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.53 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.53 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.53 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.51 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.51 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.5 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.49 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.49 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.48 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.47 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.47 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.47 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.47 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.46 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.45 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.44 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.44 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.44 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.43 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.43 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.43 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.42 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.42 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.41 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.4 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.39 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.39 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.39 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.39 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.38 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.38 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.38 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.37 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.36 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.36 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.36 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.35 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.34 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.34 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.31 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.29 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.27 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.27 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.27 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.27 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.26 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.26 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.25 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.24 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 99.22 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.22 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.22 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.22 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.2 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.2 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.19 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.15 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.13 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.12 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.11 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.1 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.08 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.06 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.05 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.04 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.03 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 99.03 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.99 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.98 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.96 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.95 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.95 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.95 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.94 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.94 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.94 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.93 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.92 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.92 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.9 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 98.86 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 98.86 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.85 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 98.84 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.81 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.81 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.81 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.79 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.79 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.78 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.77 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.72 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.7 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.69 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.66 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.64 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.63 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.63 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.6 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.58 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.58 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.56 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.53 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.53 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.52 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.51 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.51 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.5 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.5 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.49 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.47 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.47 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.46 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.46 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.44 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.44 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.42 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.42 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.39 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.39 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 98.38 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.34 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.33 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.32 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.31 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.28 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.27 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.25 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 98.24 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.23 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.23 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.21 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.17 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.14 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 98.14 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 98.13 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.06 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.05 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.04 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.01 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.99 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.97 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.95 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.94 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.93 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.87 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.87 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.87 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.86 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.84 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.8 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.78 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.77 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.73 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.67 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.63 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.59 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.58 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.58 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.56 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.54 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.53 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 97.47 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.44 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.43 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.38 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.36 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.34 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.32 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.31 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.3 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.29 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.28 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 97.25 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.25 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.22 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.2 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.18 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 97.18 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.16 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 97.12 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.09 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.07 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 97.07 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.95 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 96.95 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 96.92 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.89 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 96.88 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.88 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.74 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.73 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.73 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 96.66 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.59 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 96.57 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.45 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.45 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 96.33 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.27 | |
| PRK10115 | 686 | protease 2; Provisional | 96.24 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.05 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.02 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 95.98 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 95.97 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 95.97 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 95.95 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.89 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 95.88 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 95.88 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 95.78 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 95.78 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 95.76 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 95.61 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 95.5 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 95.49 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 95.45 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 95.3 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 95.14 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 94.99 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 94.88 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.85 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.82 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.75 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 94.55 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 94.46 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 94.41 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 94.32 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 94.29 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 94.28 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 94.16 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 94.15 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 93.91 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 93.87 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 93.75 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 93.64 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 93.57 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 93.4 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 93.25 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 93.16 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 93.14 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 92.92 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 92.87 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 92.6 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 92.54 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 92.45 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 92.27 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 92.26 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 92.21 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 92.03 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 91.95 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 91.87 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 91.66 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 91.56 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 91.49 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 91.46 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 91.04 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 90.97 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 90.86 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 90.59 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 90.36 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 90.11 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 90.07 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 90.04 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 89.88 | |
| smart00564 | 33 | PQQ beta-propeller repeat. Beta-propeller repeat o | 89.84 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 89.21 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 88.92 | |
| PF01011 | 38 | PQQ: PQQ enzyme repeat family.; InterPro: IPR00237 | 88.46 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 88.41 | |
| PF01011 | 38 | PQQ: PQQ enzyme repeat family.; InterPro: IPR00237 | 88.36 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 88.28 | |
| PRK10115 | 686 | protease 2; Provisional | 87.67 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 87.4 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 87.18 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 86.94 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 86.64 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 85.36 | |
| PLN02193 | 470 | nitrile-specifier protein | 85.08 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 84.78 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 84.71 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 84.69 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 84.56 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 84.56 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 84.38 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 84.27 | |
| PF01436 | 28 | NHL: NHL repeat; InterPro: IPR001258 The NHL repea | 83.83 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 83.78 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 83.03 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 82.95 | |
| PLN02153 | 341 | epithiospecifier protein | 82.86 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 82.85 | |
| PF14269 | 299 | Arylsulfotran_2: Arylsulfotransferase (ASST) | 82.45 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 82.14 | |
| PF01731 | 86 | Arylesterase: Arylesterase; InterPro: IPR002640 Th | 81.86 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 81.32 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 81.0 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 80.65 | |
| COG5129 | 303 | MAK16 Nuclear protein with HMG-like acidic region | 80.63 | |
| PF14269 | 299 | Arylsulfotran_2: Arylsulfotransferase (ASST) | 80.05 |
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-31 Score=206.07 Aligned_cols=155 Identities=22% Similarity=0.285 Sum_probs=147.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
+.|+|+.++|++++.|+++++|.+.+...+....+|..||+.+.|+|-|.++++++.|++.++|.... ..+++.+.+ |
T Consensus 457 ~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~-~~PlRifag-h 534 (707)
T KOG0263|consen 457 CSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH-NKPLRIFAG-H 534 (707)
T ss_pred eeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc-CCchhhhcc-c
Confidence 36999999999999999999999999999999999999999999999999999999999999999976 578899999 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
-..+.|+ |+|+..++++|+.|.+|++||+.+|..+..|.+|.. +|++++|+|+|++|++|+.|+.|.+||+.++..-
T Consensus 535 lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~-~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v 612 (707)
T KOG0263|consen 535 LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKG-PVTALAFSPCGRYLASGDEDGLIKIWDLANGSLV 612 (707)
T ss_pred ccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCC-ceEEEEEcCCCceEeecccCCcEEEEEcCCCcch
Confidence 9999999 999999999999999999999999999999999966 9999999999999999999999999999997654
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=190.25 Aligned_cols=153 Identities=18% Similarity=0.280 Sum_probs=141.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
++|+|+|..|++|+.|.++++||+.+..+..+.++|...|.+++|+|||..|++|+.+|+|++||..+.+.....+.+ |
T Consensus 121 ~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~g-H 199 (480)
T KOG0271|consen 121 VQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRG-H 199 (480)
T ss_pred EEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccC-c
Confidence 479999999999999999999999999999999999999999999999999999999999999999877777889999 9
Q ss_pred CCceeEE-Eee-----CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 81 PNSVDAL-LKL-----DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 81 ~~~v~~~-~~~-----~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
...|.++ |.| ...++++++.||.|+|||+..+.++..+.+|+. +|+|+.|-.+| +|++++.|++|++|+...
T Consensus 200 ~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~-~VTCvrwGG~g-liySgS~DrtIkvw~a~d 277 (480)
T KOG0271|consen 200 KKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTA-SVTCVRWGGEG-LIYSGSQDRTIKVWRALD 277 (480)
T ss_pred ccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCcc-ceEEEEEcCCc-eEEecCCCceEEEEEccc
Confidence 9999999 744 678999999999999999999999999999976 89999997664 899999999999999877
Q ss_pred cc
Q 028802 155 IL 156 (203)
Q Consensus 155 ~~ 156 (203)
+.
T Consensus 278 G~ 279 (480)
T KOG0271|consen 278 GK 279 (480)
T ss_pred hh
Confidence 54
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=196.43 Aligned_cols=157 Identities=23% Similarity=0.205 Sum_probs=145.0
Q ss_pred Cccccc--CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028802 1 MTFAAD--AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~--~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
+.|+|. +..||+|+.||++++|++.+..++..+++|..+|..++|+|+|++|++++.|.+-++||+.+ +..+....+
T Consensus 223 ~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~t-k~ElL~QEG 301 (459)
T KOG0272|consen 223 AVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLET-KSELLLQEG 301 (459)
T ss_pred EEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhccccc-chhhHhhcc
Confidence 468887 56899999999999999999899999999999999999999999999999999999999986 455566788
Q ss_pred CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028802 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
|...|.++ |+|+|.++++|+.|..-+|||+++|+++..+.+|.. +|.+|+|+|+|..||||+.|++++|||++...+
T Consensus 302 -Hs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ 379 (459)
T KOG0272|consen 302 -HSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE 379 (459)
T ss_pred -cccccceeEecCCCceeeccCccchhheeecccCcEEEEeccccc-ceeeEeECCCceEEeecCCCCcEEEeeeccccc
Confidence 99999999 999999999999999999999999999999999977 899999999999999999999999999998765
Q ss_pred CCC
Q 028802 158 GSG 160 (203)
Q Consensus 158 ~~~ 160 (203)
-..
T Consensus 380 ly~ 382 (459)
T KOG0272|consen 380 LYT 382 (459)
T ss_pred cee
Confidence 433
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-31 Score=193.95 Aligned_cols=157 Identities=16% Similarity=0.182 Sum_probs=147.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
++|+|+|++|++++.|.+-++||+.++..+...++|...|.+++|.|||.++++|+.|..-+|||+++ +.++..+.+ |
T Consensus 267 VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt-gr~im~L~g-H 344 (459)
T KOG0272|consen 267 VAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRT-GRCIMFLAG-H 344 (459)
T ss_pred eeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeeccc-CcEEEEecc-c
Confidence 58999999999999999999999999988888899999999999999999999999999999999996 688889999 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeC-CCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
..+|..+ |+|+|..+++|+.|++++|||++..+++.++.+|.. -|+.|.|+| .|.+|++++.|++++||..++..+-
T Consensus 345 ~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n-lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ 423 (459)
T KOG0272|consen 345 IKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN-LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPL 423 (459)
T ss_pred ccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc-hhhheEecccCCeEEEEcccCcceeeecCCCcccc
Confidence 9999999 999999999999999999999999999999999966 799999999 7789999999999999999988765
Q ss_pred CC
Q 028802 159 SG 160 (203)
Q Consensus 159 ~~ 160 (203)
..
T Consensus 424 ks 425 (459)
T KOG0272|consen 424 KS 425 (459)
T ss_pred hh
Confidence 43
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=176.54 Aligned_cols=157 Identities=19% Similarity=0.248 Sum_probs=141.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-C
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-L 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~ 79 (203)
++.+++|++.++++.|+++++||+.+++..+.+.+|..-|.+++|++|.+.+++|+.|.+|++|++. +.+..++.. .
T Consensus 69 v~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~--g~ck~t~~~~~ 146 (315)
T KOG0279|consen 69 VVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL--GVCKYTIHEDS 146 (315)
T ss_pred eEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec--ccEEEEEecCC
Confidence 4578999999999999999999999999999999999999999999999999999999999999986 345444443 0
Q ss_pred CCCceeEE-EeeC--CCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 80 SPNSVDAL-LKLD--EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 80 ~~~~v~~~-~~~~--~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+...|.|+ |+|+ ..+|++++.|++|++||+++.+....+.+|.. -++.++++|||...++|+.||.+.+||++..+
T Consensus 147 ~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~-~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k 225 (315)
T KOG0279|consen 147 HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSG-YVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK 225 (315)
T ss_pred CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccc-cEEEEEECCCCCEEecCCCCceEEEEEccCCc
Confidence 26789999 9997 78999999999999999999999999999966 79999999999999999999999999999887
Q ss_pred cCCC
Q 028802 157 KGSG 160 (203)
Q Consensus 157 ~~~~ 160 (203)
.-..
T Consensus 226 ~lys 229 (315)
T KOG0279|consen 226 NLYS 229 (315)
T ss_pred eeEe
Confidence 6543
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-30 Score=186.41 Aligned_cols=160 Identities=19% Similarity=0.243 Sum_probs=135.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeE-EEeecCCcccEEEEEEee-----CCCEEEEecCCCeEEEEEcCCc-----
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV-QTRSEFSEEELTSVVLMK-----NGRKVVCGSQSGTVLLYSWGYF----- 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~i~~l~~~~-----~~~~l~~~~~d~~i~v~d~~~~----- 69 (203)
++|+|||+.||+|+.||+|++||..+++. ...+.+|...|++++|.| ..++|++++.||.++|||+...
T Consensus 163 vawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ 242 (480)
T KOG0271|consen 163 VAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRT 242 (480)
T ss_pred EEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEE
Confidence 58999999999999999999999988755 467889999999999986 4467777777777777777431
Q ss_pred --------------------------------------------------------------------------------
Q 028802 70 -------------------------------------------------------------------------------- 69 (203)
Q Consensus 70 -------------------------------------------------------------------------------- 69 (203)
T Consensus 243 lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~ 322 (480)
T KOG0271|consen 243 LSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQK 322 (480)
T ss_pred eccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHH
Confidence
Q ss_pred ----------------------------------cccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCce
Q 028802 70 ----------------------------------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI 114 (203)
Q Consensus 70 ----------------------------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~ 114 (203)
.+++....+ |...|..+ |+|++++|++++-|..|++|+.++|+.
T Consensus 323 ~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtg-Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~ 401 (480)
T KOG0271|consen 323 KALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTG-HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKF 401 (480)
T ss_pred HHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhc-hhhheeeEEECCCccEEEEeecccceeeeeCCCcch
Confidence 111222335 66778888 999999999999999999999999999
Q ss_pred eeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCCCC
Q 028802 115 IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNN 162 (203)
Q Consensus 115 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 162 (203)
+.+|++|-. +|+.++|+.|.+.|++|+.|.+|++|++++....++.+
T Consensus 402 lasfRGHv~-~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLp 448 (480)
T KOG0271|consen 402 LASFRGHVA-AVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLP 448 (480)
T ss_pred hhhhhhccc-eeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCC
Confidence 999999966 89999999999999999999999999999987766554
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-29 Score=197.74 Aligned_cols=155 Identities=24% Similarity=0.329 Sum_probs=146.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
+.|+|-|-++|+++.|++.++|......+++.+.+|-+-|.|+.|+|+..++++|+.|.++++||+.+ +..++.|.+ |
T Consensus 499 V~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~-G~~VRiF~G-H 576 (707)
T KOG0263|consen 499 VQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVST-GNSVRIFTG-H 576 (707)
T ss_pred EEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCC-CcEEEEecC-C
Confidence 46999999999999999999999998899999999999999999999999999999999999999975 688999999 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.++|.++ |+|+|.+|++|+.||.|.+||+.+++.+..+.+|++ .|.++.|+.+|..||+++.|..|++||+......
T Consensus 577 ~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~-ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 577 KGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTG-TIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred CCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccC-ceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 9999999 999999999999999999999999999999999955 8999999999999999999999999998765544
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=187.95 Aligned_cols=158 Identities=25% Similarity=0.390 Sum_probs=144.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEc-CCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNL-RKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~-~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
++|+|+++++++++.|++|+|||+ ..+..++++.+|...|++++|+|+++++++|+.|++|++||+++ +.+...+.+
T Consensus 209 ~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~-~~~~~~l~~- 286 (456)
T KOG0266|consen 209 VAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT-GECVRKLKG- 286 (456)
T ss_pred eEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC-CeEEEeeec-
Confidence 579999999999999999999999 45588899999999999999999999999999999999999986 788999999
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc--eeeeeccCCCc-ceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR--IIQPIAEHSEY-PIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~--~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
|...|.++ |++++.+|++++.|+.|++||+.++. ++..+..+... +++++.|+|++.+|++++.|+.+++||+..+
T Consensus 287 hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 287 HSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG 366 (456)
T ss_pred cCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC
Confidence 99999999 99999999999999999999999998 56777776553 5899999999999999999999999999977
Q ss_pred ccCCC
Q 028802 156 LKGSG 160 (203)
Q Consensus 156 ~~~~~ 160 (203)
.....
T Consensus 367 ~~~~~ 371 (456)
T KOG0266|consen 367 KSVGT 371 (456)
T ss_pred cceee
Confidence 65433
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=188.27 Aligned_cols=155 Identities=21% Similarity=0.360 Sum_probs=145.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe--EEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
+.|+|+|+.+++++.++.+++|+..... ....+.+|...|..++|+|++.++++++.|+++++||+...+..++.+.+
T Consensus 165 ~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~g 244 (456)
T KOG0266|consen 165 VDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKG 244 (456)
T ss_pred EEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecC
Confidence 3689999999999999999999997766 66777889999999999999999999999999999999655678899999
Q ss_pred CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028802 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
|...++++ |+|+++++++|+.|+.|++||++++++...+.+|.+ .|++++|++++++|++++.|+.|+|||+.++..
T Consensus 245 -H~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~-~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 245 -HSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD-GISGLAFSPDGNLLVSASYDGTIRVWDLETGSK 322 (456)
T ss_pred -CCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC-ceEEEEECCCCCEEEEcCCCccEEEEECCCCce
Confidence 99999999 999999999999999999999999999999999976 899999999999999999999999999999883
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-27 Score=171.11 Aligned_cols=155 Identities=19% Similarity=0.252 Sum_probs=145.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
+++.|-.+.+++|+.|++|+|||+.++++..++.+|...|..+++++-..||++++.|+.|+.||+.. .+.++.+.+ |
T Consensus 157 vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~-nkvIR~YhG-H 234 (460)
T KOG0285|consen 157 VAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY-NKVIRHYHG-H 234 (460)
T ss_pred EeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh-hhhHHHhcc-c
Confidence 46788888999999999999999999999999999999999999999999999999999999999975 578888899 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
-..|.|+ .+|.-..|++|+.|.+++|||+++...+..+.+|.. +|.++.+.|....+++|+.|++|++||++.+...
T Consensus 235 lS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~-~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~ 312 (460)
T KOG0285|consen 235 LSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTN-PVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTM 312 (460)
T ss_pred cceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCC-cceeEEeecCCCceEEecCCceEEEeeeccCcee
Confidence 9999999 899999999999999999999999999999999965 8999999998899999999999999999988643
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-26 Score=179.17 Aligned_cols=153 Identities=18% Similarity=0.305 Sum_probs=138.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
|++||||+++|+|+.||.|+|||...+-+..++..|.+.|+.+.|+..++.+++++-||+|+.||+.. ....++|+...
T Consensus 356 l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR-YrNfRTft~P~ 434 (893)
T KOG0291|consen 356 LAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR-YRNFRTFTSPE 434 (893)
T ss_pred EEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc-cceeeeecCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999974 56777777623
Q ss_pred CCceeEE-EeeCCCEEEEEcCCC-cEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 81 PNSVDAL-LKLDEDRVITGSENG-LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg-~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
+-...|+ ..|.|.+++.|+.|. .|.+|++++|+.+-.+.+|.+ +|.+++|+|.+..|++++.|.+|++||+-..
T Consensus 435 p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEg-PVs~l~f~~~~~~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 435 PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEG-PVSGLSFSPDGSLLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCC-cceeeEEccccCeEEeccccceEEEEEeecc
Confidence 3445666 689999999999876 499999999999999999955 9999999999999999999999999998655
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=177.31 Aligned_cols=154 Identities=13% Similarity=0.227 Sum_probs=133.2
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCC-------eEEEeecCCcccEEEEEEeeCC-CEEEEecCCCeEEEEEcCCccc
Q 028802 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKN-------TVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~v~d~~~~-------~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~d~~i~v~d~~~~~~ 71 (203)
++|+| ++++|++|+.|++|++|++.++ ..+..+.+|...|.+++|+|++ ++|++++.|+.|++||+.. +.
T Consensus 81 v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t-g~ 159 (493)
T PTZ00421 81 VAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER-GK 159 (493)
T ss_pred EEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCC-Ce
Confidence 57999 8899999999999999999764 3466788999999999999975 6899999999999999975 46
Q ss_pred cceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe----CCCc
Q 028802 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS----HDSM 146 (203)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~d~~ 146 (203)
.+..+.. |...|.++ |+|++.+|++++.|+.|++||+++++.+..+.+|....+..+.|.+++..|++++ .|+.
T Consensus 160 ~~~~l~~-h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~ 238 (493)
T PTZ00421 160 AVEVIKC-HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQ 238 (493)
T ss_pred EEEEEcC-CCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCe
Confidence 6777888 89999999 9999999999999999999999999998888888653455678999888877655 4789
Q ss_pred EEEEeCCCcc
Q 028802 147 LKLWDLDDIL 156 (203)
Q Consensus 147 i~iwd~~~~~ 156 (203)
|++||+++..
T Consensus 239 VklWDlr~~~ 248 (493)
T PTZ00421 239 IMLWDTRKMA 248 (493)
T ss_pred EEEEeCCCCC
Confidence 9999998754
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-26 Score=165.26 Aligned_cols=159 Identities=16% Similarity=0.228 Sum_probs=143.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
+.|-|.|.+|+++++|.+|+.|++.++.++.++.+|...|..++.+.||..+++++.|.++++|-+.+ +.+...+.. |
T Consensus 199 V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t-~~~k~~lR~-h 276 (406)
T KOG0295|consen 199 VFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVAT-KQCKAELRE-H 276 (406)
T ss_pred EEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEecc-chhhhhhhc-c
Confidence 35778999999999999999999999999999999999999999999999999999999999999975 566777888 8
Q ss_pred CCceeEE-EeeC---------------CCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCC
Q 028802 81 PNSVDAL-LKLD---------------EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 81 ~~~v~~~-~~~~---------------~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 144 (203)
..++-++ |-|. +.++.+++.|++|++||+.++.++.++.+|.. .|..++|+|.|+||+++..|
T Consensus 277 Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdn-wVr~~af~p~Gkyi~ScaDD 355 (406)
T KOG0295|consen 277 EHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDN-WVRGVAFSPGGKYILSCADD 355 (406)
T ss_pred ccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccc-eeeeeEEcCCCeEEEEEecC
Confidence 8888888 6442 25899999999999999999999999999954 89999999999999999999
Q ss_pred CcEEEEeCCCcccCCCCC
Q 028802 145 SMLKLWDLDDILKGSGNN 162 (203)
Q Consensus 145 ~~i~iwd~~~~~~~~~~~ 162 (203)
+++++||+.+.++....+
T Consensus 356 ktlrvwdl~~~~cmk~~~ 373 (406)
T KOG0295|consen 356 KTLRVWDLKNLQCMKTLE 373 (406)
T ss_pred CcEEEEEeccceeeeccC
Confidence 999999999998776544
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6e-26 Score=159.62 Aligned_cols=155 Identities=21% Similarity=0.288 Sum_probs=132.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCC-cccEEEEEEeeC--CCEEEEecCCCeEEEEEcCCccccceeee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~i~~l~~~~~--~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 77 (203)
++|+||...|++|+.|.+|.+|++-........... ...|.++.|+|+ ..+|++++.|+++++||+++ .+....+.
T Consensus 111 va~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~-~~l~~~~~ 189 (315)
T KOG0279|consen 111 VAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN-CQLRTTFI 189 (315)
T ss_pred EEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC-cchhhccc
Confidence 579999999999999999999998866444333333 789999999997 67899999999999999985 57778889
Q ss_pred cCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+ |.+.++.+ ++|||.++++|+.+|.+.+||++.++.+..+.+. . .|.+++|+|+.-+|+.+ .+..|+|||+.+..
T Consensus 190 g-h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~-~-~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~ 265 (315)
T KOG0279|consen 190 G-HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAF-D-IVNSLCFSPNRYWLCAA-TATSIKIWDLESKA 265 (315)
T ss_pred c-ccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCC-C-eEeeEEecCCceeEeec-cCCceEEEeccchh
Confidence 9 99999999 9999999999999999999999999998888665 4 79999999997666555 45569999998876
Q ss_pred cCCC
Q 028802 157 KGSG 160 (203)
Q Consensus 157 ~~~~ 160 (203)
.-..
T Consensus 266 ~v~~ 269 (315)
T KOG0279|consen 266 VVEE 269 (315)
T ss_pred hhhh
Confidence 6543
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-26 Score=158.43 Aligned_cols=155 Identities=22% Similarity=0.286 Sum_probs=126.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCc-----------
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----------- 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~----------- 69 (203)
+.|..+|+.+++|+.||+++|||++...+-+.+ .+.++|+++..+|+...|++|..+|.|++||+...
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~ 167 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDD 167 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCC
Confidence 358889999999999999999999986554444 45688999999988888888888889999988642
Q ss_pred -------------------------------------cccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC
Q 028802 70 -------------------------------------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP 111 (203)
Q Consensus 70 -------------------------------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~ 111 (203)
-.++..+.. |.+-+..+ ++|++++|++++.|.+++||+...
T Consensus 168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a-h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQA-HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDD 246 (311)
T ss_pred cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheec-ccceEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence 012222344 55555555 999999999999999999999988
Q ss_pred C-ceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 112 N-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 112 ~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
. +....+.+|.. .++..+||.||+||++++.|+..++|+++.++..
T Consensus 247 ~~kle~~l~gh~r-WvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 247 FFKLELVLTGHQR-WVWDCAFSADGEYLVTASSDHTARLWDLSAGKEV 293 (311)
T ss_pred ceeeEEEeecCCc-eEEeeeeccCccEEEecCCCCceeecccccCcee
Confidence 7 56677888854 8999999999999999999999999999988743
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-27 Score=171.56 Aligned_cols=161 Identities=18% Similarity=0.313 Sum_probs=145.7
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeec--------CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccc
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE--------FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS 73 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--------~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 73 (203)
.|||||++|++|+-||.|.||+..+|+....++ -+..+|.|+.|+.|...|++|+.||.|++|.+.+ +.++
T Consensus 220 ~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t-G~Cl 298 (508)
T KOG0275|consen 220 RFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET-GQCL 298 (508)
T ss_pred eeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec-chHH
Confidence 599999999999999999999999987655443 2567899999999999999999999999999986 6888
Q ss_pred eeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028802 74 DRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
+.|..+|...|+|+ |+.++..+++++.|.++++.-+.+|+++..+++|+. -|..+.|.++|.++++++.||+|++|+.
T Consensus 299 RrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsS-yvn~a~ft~dG~~iisaSsDgtvkvW~~ 377 (508)
T KOG0275|consen 299 RRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSS-YVNEATFTDDGHHIISASSDGTVKVWHG 377 (508)
T ss_pred HHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccc-cccceEEcCCCCeEEEecCCccEEEecC
Confidence 88884499999999 999999999999999999999999999999999966 6999999999999999999999999999
Q ss_pred CCcccCCCCCcC
Q 028802 153 DDILKGSGNNIS 164 (203)
Q Consensus 153 ~~~~~~~~~~~~ 164 (203)
.+.++-..++..
T Consensus 378 KtteC~~Tfk~~ 389 (508)
T KOG0275|consen 378 KTTECLSTFKPL 389 (508)
T ss_pred cchhhhhhccCC
Confidence 998877665543
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-26 Score=169.74 Aligned_cols=155 Identities=21% Similarity=0.296 Sum_probs=130.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCc-----------
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----------- 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~----------- 69 (203)
|+|+.+|..||+|+.||.+++|+.. |.++.++-.|.++|.+|.|+..|.+|++++.|+++.+||..+.
T Consensus 241 L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~ 319 (524)
T KOG0273|consen 241 LDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSA 319 (524)
T ss_pred EEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccC
Confidence 5899999999999999999999965 5577888899999999999999999999999999999998432
Q ss_pred -----------------------------cccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEcc---------
Q 028802 70 -----------------------------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL--------- 110 (203)
Q Consensus 70 -----------------------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~--------- 110 (203)
..+..++.+ |.+.|.++ |+|.+.+|++++.|+++++|+..
T Consensus 320 ~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~G-H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~ 398 (524)
T KOG0273|consen 320 PALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIG-HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ 398 (524)
T ss_pred CccceEEecCceEeecCCCceEEEEEecCCCcceeeec-ccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh
Confidence 233445567 88889999 99999888888888888888742
Q ss_pred ------------------------------------------CCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEE
Q 028802 111 ------------------------------------------PNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLK 148 (203)
Q Consensus 111 ------------------------------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 148 (203)
.+.++.++..|.. +|++++|+|+|+++|+|+.||.|.
T Consensus 399 ~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~-pVysvafS~~g~ylAsGs~dg~V~ 477 (524)
T KOG0273|consen 399 AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE-PVYSVAFSPNGRYLASGSLDGCVH 477 (524)
T ss_pred hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC-ceEEEEecCCCcEEEecCCCCeeE
Confidence 2335555666744 999999999999999999999999
Q ss_pred EEeCCCcccC
Q 028802 149 LWDLDDILKG 158 (203)
Q Consensus 149 iwd~~~~~~~ 158 (203)
+|+++++..-
T Consensus 478 iws~~~~~l~ 487 (524)
T KOG0273|consen 478 IWSTKTGKLV 487 (524)
T ss_pred eccccchhee
Confidence 9999988654
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.8e-26 Score=159.58 Aligned_cols=158 Identities=16% Similarity=0.182 Sum_probs=142.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC------eEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKN------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~------~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~ 74 (203)
++|+|.|+++|+|+-|+...||++.+. +..+.+.+|.+.+.++.|.+ ...|++++.|.+..+||+.+ ++...
T Consensus 103 CA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~-g~~~~ 180 (343)
T KOG0286|consen 103 CAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIET-GQQTQ 180 (343)
T ss_pred EEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEccc-ceEEE
Confidence 479999999999999999999999854 45567889999999999987 45788999999999999985 68888
Q ss_pred eeecCCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028802 75 RFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~-~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
.|.+ |.+.|.++ ++| +++.+++|+-|...++||++.+.+.++|.+|. ..|.++.|.|+|.-+++|+.|++.++||+
T Consensus 181 ~f~G-H~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghe-sDINsv~ffP~G~afatGSDD~tcRlyDl 258 (343)
T KOG0286|consen 181 VFHG-HTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHE-SDINSVRFFPSGDAFATGSDDATCRLYDL 258 (343)
T ss_pred EecC-CcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccc-cccceEEEccCCCeeeecCCCceeEEEee
Confidence 9999 99999999 899 99999999999999999999999999999995 48999999999999999999999999999
Q ss_pred CCcccCCCCC
Q 028802 153 DDILKGSGNN 162 (203)
Q Consensus 153 ~~~~~~~~~~ 162 (203)
+...+-....
T Consensus 259 RaD~~~a~ys 268 (343)
T KOG0286|consen 259 RADQELAVYS 268 (343)
T ss_pred cCCcEEeeec
Confidence 9876655443
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-27 Score=172.35 Aligned_cols=152 Identities=14% Similarity=0.254 Sum_probs=136.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCC-cccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
|.|+++|.++++|..+|.|++|+..-... ..+..| ...|++++|+|....+++++.||+|+|||... ......+.+
T Consensus 144 m~ws~~g~wmiSgD~gG~iKyWqpnmnnV-k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~-~kee~vL~G- 220 (464)
T KOG0284|consen 144 MKWSHNGTWMISGDKGGMIKYWQPNMNNV-KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM-PKEERVLRG- 220 (464)
T ss_pred EEEccCCCEEEEcCCCceEEecccchhhh-HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC-Cchhheecc-
Confidence 57999999999999999999999775543 445544 48999999999999999999999999999975 355567788
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
|...|.++ |+|.-.+|++++.|..|++||.+++.++.++.+|.. .|..+.|+|++++|++++.|..+++||+++..
T Consensus 221 HgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKn-tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mk 297 (464)
T KOG0284|consen 221 HGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKN-TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMK 297 (464)
T ss_pred CCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccc-eEEEEEEcCCCCeeEEccCCceEEEEehhHhH
Confidence 99999999 999999999999999999999999999999999966 89999999999999999999999999999654
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-25 Score=156.69 Aligned_cols=161 Identities=20% Similarity=0.243 Sum_probs=144.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCc--c---cccee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF--K---DCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~--~---~~~~~ 75 (203)
|.|++|.++|++++.||.+.|||.-+.....-++-....|..++|+|.|+++++|+-|+...||++.+. . ...+.
T Consensus 61 ~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~ 140 (343)
T KOG0286|consen 61 MDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRE 140 (343)
T ss_pred eEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeee
Confidence 469999999999999999999999988888888888899999999999999999999999999999743 1 33456
Q ss_pred eecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeC-CCCeEEEEeCCCcEEEEeCC
Q 028802 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~ 153 (203)
+.+ |.+.+.++ |-+ ...|++++.|.+.-+||+++++.+..+.+|.+ .|.++.++| +++.+++|+.|+..++||++
T Consensus 141 l~g-HtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~g-DV~slsl~p~~~ntFvSg~cD~~aklWD~R 217 (343)
T KOG0286|consen 141 LAG-HTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTG-DVMSLSLSPSDGNTFVSGGCDKSAKLWDVR 217 (343)
T ss_pred ecC-ccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcc-cEEEEecCCCCCCeEEecccccceeeeecc
Confidence 788 99999999 655 66788999999999999999999999999976 899999999 99999999999999999999
Q ss_pred CcccCCCCCcC
Q 028802 154 DILKGSGNNIS 164 (203)
Q Consensus 154 ~~~~~~~~~~~ 164 (203)
.+...+.+.-+
T Consensus 218 ~~~c~qtF~gh 228 (343)
T KOG0286|consen 218 SGQCVQTFEGH 228 (343)
T ss_pred CcceeEeeccc
Confidence 99888777644
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.7e-25 Score=152.37 Aligned_cols=149 Identities=15% Similarity=0.249 Sum_probs=132.4
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccc-cceeeecCCCCceeE
Q 028802 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD-CSDRFVGLSPNSVDA 86 (203)
Q Consensus 8 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~v~~ 86 (203)
-+|++++.|.+|++|...+|.+..+++...+.|+.+.+.|++..|++++. ..|++||+++... ++..+.+ |...|.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~-h~kNVta 88 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEG-HTKNVTA 88 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEec-cCCceEE
Confidence 47899999999999999999999999998999999999999999998874 6799999986544 7889999 9999999
Q ss_pred E-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028802 87 L-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 87 ~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
+ |..+|+.+++|+.||+++|||++...+...+... .+|.++..+|+...|+++..+|.|++||+.......+
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~--spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~ 161 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN--SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE 161 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCcccchhccCC--CCcceEEecCCcceEEeecCCCcEEEEEccCCccccc
Confidence 9 9999999999999999999999985555545433 4899999999999999999999999999988765543
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-24 Score=151.03 Aligned_cols=154 Identities=19% Similarity=0.200 Sum_probs=137.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC--eEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCC--ccccceee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKN--TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY--FKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~--~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~--~~~~~~~~ 76 (203)
++|+|.|++|++|+.|.++.||.-..+ +++..+++|...|-+++|+++|++|++++.|..|-+|.+.. .-.+...+
T Consensus 67 vAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL 146 (312)
T KOG0645|consen 67 VAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVL 146 (312)
T ss_pred eeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeee
Confidence 589999999999999999999987654 67889999999999999999999999999999999999873 23567788
Q ss_pred ecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC---CceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028802 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP---NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
+. |...|..+ |+|...+|++++.|.+|++|.-.. -.+.+++.+|.. .|.+++|++.|..|++++.|++++||-.
T Consensus 147 ~~-HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 147 QE-HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRL 224 (312)
T ss_pred cc-ccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccc-eEEEEEecCCCceEEEecCCcceEeeee
Confidence 88 99999888 999999999999999999998762 357899999965 7999999999999999999999999986
Q ss_pred CCcc
Q 028802 153 DDIL 156 (203)
Q Consensus 153 ~~~~ 156 (203)
.+..
T Consensus 225 ~~~~ 228 (312)
T KOG0645|consen 225 YTDL 228 (312)
T ss_pred ccCc
Confidence 5443
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.9e-26 Score=166.91 Aligned_cols=156 Identities=15% Similarity=0.266 Sum_probs=138.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
|.|.|+|+.|++|+..|.+.+|+..+-.....++.|.++|.++.|++++.++++|+.+|.|++|+.. ...++.+...|
T Consensus 102 v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn--mnnVk~~~ahh 179 (464)
T KOG0284|consen 102 VRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN--MNNVKIIQAHH 179 (464)
T ss_pred EEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc--hhhhHHhhHhh
Confidence 5799999999999999999999975544445567899999999999999999999999999999986 35566666624
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
...|+++ |+|....+++++.||+|+|||....++...+++| +..|.++.|+|....|++++.|..|++||.+++.+-.
T Consensus 180 ~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GH-gwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~ 258 (464)
T KOG0284|consen 180 AEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGH-GWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLA 258 (464)
T ss_pred hhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccC-CCCcceeccCCccceeEEccCCceeEeecCCCcchhh
Confidence 4899999 9999999999999999999999988888889999 5689999999999999999999999999999997653
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-23 Score=147.92 Aligned_cols=151 Identities=17% Similarity=0.230 Sum_probs=132.2
Q ss_pred Cccccc-CCEEEEEcCCCeEEEEEcCCC---eEEEee-cCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCC-ccccce
Q 028802 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKN---TVQTRS-EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-FKDCSD 74 (203)
Q Consensus 1 l~~sp~-~~~l~~~~~d~~i~v~d~~~~---~~~~~~-~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~ 74 (203)
++|+|- |..||+++.|..|++|+...+ .+...+ .+|...|++++|+|.|++|++++.|.++.||.-.. .-+++.
T Consensus 20 ~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~ 99 (312)
T KOG0645|consen 20 VAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVA 99 (312)
T ss_pred EEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEe
Confidence 478997 889999999999999998843 333334 47889999999999999999999999999997542 226788
Q ss_pred eeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC---ceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEE
Q 028802 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN---RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw 150 (203)
++.+ |.+.|.++ |+++|.+|++++.|..|.+|.+..+ .+...++.|++ .|..+.|+|....|++++.|.+|++|
T Consensus 100 ~lEG-HEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Htq-DVK~V~WHPt~dlL~S~SYDnTIk~~ 177 (312)
T KOG0645|consen 100 TLEG-HENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ-DVKHVIWHPTEDLLFSCSYDNTIKVY 177 (312)
T ss_pred eeec-cccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccc-cccEEEEcCCcceeEEeccCCeEEEE
Confidence 8999 99999999 9999999999999999999998743 57788899976 89999999999999999999999999
Q ss_pred eCC
Q 028802 151 DLD 153 (203)
Q Consensus 151 d~~ 153 (203)
.-.
T Consensus 178 ~~~ 180 (312)
T KOG0645|consen 178 RDE 180 (312)
T ss_pred eec
Confidence 865
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-24 Score=168.02 Aligned_cols=153 Identities=18% Similarity=0.197 Sum_probs=144.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
++++|+.+++|+|+.|.+.+||+++......++.+|...|+++.|+|..+.+++++.|.+|++|.+.+ ..++++|.+ |
T Consensus 469 Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~-fSClkT~eG-H 546 (775)
T KOG0319|consen 469 VAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST-FSCLKTFEG-H 546 (775)
T ss_pred eEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecc-ceeeeeecC-c
Confidence 57899999999999999999999999999999999999999999999999999999999999999985 689999999 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
...|... |-.+++.|++++.||-|++|++.++.++.++..|.+ .|++++.+|...++++|+.||.|.+|.=.|..
T Consensus 547 ~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~D-rvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 547 TSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHND-RVWALSVSPLLDMFVTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred cceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccc-eeEEEeecCccceeEecCCCeEEEEeecCcHH
Confidence 9999888 989999999999999999999999999999999976 89999999999999999999999999755443
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-23 Score=165.52 Aligned_cols=151 Identities=14% Similarity=0.146 Sum_probs=123.5
Q ss_pred Cccccc-CCEEEEEcCCCeEEEEEcCCCe--------EEEeecCCcccEEEEEEeeCCCE-EEEecCCCeEEEEEcCCcc
Q 028802 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNT--------VQTRSEFSEEELTSVVLMKNGRK-VVCGSQSGTVLLYSWGYFK 70 (203)
Q Consensus 1 l~~sp~-~~~l~~~~~d~~i~v~d~~~~~--------~~~~~~~~~~~i~~l~~~~~~~~-l~~~~~d~~i~v~d~~~~~ 70 (203)
++|+|+ +++|++|+.|++|+||++.++. .+..+.+|...|.+++|+|++.. |++++.|+.|++||+...
T Consensus 80 lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg- 158 (568)
T PTZ00420 80 LQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENE- 158 (568)
T ss_pred EEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCC-
Confidence 579996 7899999999999999997542 33467789999999999998875 468899999999999853
Q ss_pred ccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceE-----EEEEeCCCCeEEEEeCC
Q 028802 71 DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIE-----SLALSHDRKFLGSISHD 144 (203)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~l~~~~~d 144 (203)
.....+. +...+.++ |+|+|.+|++++.|+.|++||+++++.+..+.+|.+ .+. ...|++++.+|++++.+
T Consensus 159 ~~~~~i~--~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g-~~~s~~v~~~~fs~d~~~IlTtG~d 235 (568)
T PTZ00420 159 KRAFQIN--MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDG-GKNTKNIWIDGLGGDDNYILSTGFS 235 (568)
T ss_pred cEEEEEe--cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccC-CceeEEEEeeeEcCCCCEEEEEEcC
Confidence 4444444 45678899 999999999999999999999999999989988864 332 23356899999998876
Q ss_pred C----cEEEEeCCCc
Q 028802 145 S----MLKLWDLDDI 155 (203)
Q Consensus 145 ~----~i~iwd~~~~ 155 (203)
+ .|+|||+++.
T Consensus 236 ~~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 236 KNNMREMKLWDLKNT 250 (568)
T ss_pred CCCccEEEEEECCCC
Confidence 4 7999999863
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-23 Score=164.07 Aligned_cols=153 Identities=16% Similarity=0.133 Sum_probs=127.8
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEE-------------EeecCCcccEEEEEEee-CCCEEEEecCCCeEEEEEcCC
Q 028802 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQ-------------TRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGY 68 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~v~d~~~~~~~-------------~~~~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d~~~ 68 (203)
.++++..+++++.+..+..|+...+..+ ..+.+|.+.|.+++|+| ++++|++++.|+.|++||+..
T Consensus 28 ~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~ 107 (493)
T PTZ00421 28 ALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPE 107 (493)
T ss_pred ccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCC
Confidence 4566666777777777777776544222 13567899999999999 889999999999999999964
Q ss_pred cc------ccceeeecCCCCceeEE-EeeCC-CEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEE
Q 028802 69 FK------DCSDRFVGLSPNSVDAL-LKLDE-DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGS 140 (203)
Q Consensus 69 ~~------~~~~~~~~~~~~~v~~~-~~~~~-~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 140 (203)
.+ .++..+.+ |...|.++ |+|++ ++|++++.|+.|++||+.+++.+..+..|.. .|.+++|+|+|.+|++
T Consensus 108 ~~~~~~~~~~l~~L~g-H~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~-~V~sla~spdG~lLat 185 (493)
T PTZ00421 108 EGLTQNISDPIVHLQG-HTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSD-QITSLEWNLDGSLLCT 185 (493)
T ss_pred CccccccCcceEEecC-CCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCC-ceEEEEEECCCCEEEE
Confidence 32 24567788 99999999 99975 6899999999999999999999888988865 8999999999999999
Q ss_pred EeCCCcEEEEeCCCccc
Q 028802 141 ISHDSMLKLWDLDDILK 157 (203)
Q Consensus 141 ~~~d~~i~iwd~~~~~~ 157 (203)
++.|+.|++||++++..
T Consensus 186 gs~Dg~IrIwD~rsg~~ 202 (493)
T PTZ00421 186 TSKDKKLNIIDPRDGTI 202 (493)
T ss_pred ecCCCEEEEEECCCCcE
Confidence 99999999999998754
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.9e-24 Score=158.90 Aligned_cols=149 Identities=15% Similarity=0.206 Sum_probs=138.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCC---------CEEEEecCCCeEEEEEcCCccc
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG---------RKVVCGSQSGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~---------~~l~~~~~d~~i~v~d~~~~~~ 71 (203)
|.|+|.|.+|++++.|++++||+.........+..|...|..+.|+|.+ ..+++++.|++|++||+. .+.
T Consensus 365 lk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~-~gv 443 (524)
T KOG0273|consen 365 LKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVE-SGV 443 (524)
T ss_pred EEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEcc-CCc
Confidence 4699999999999999999999998888888999999999999999965 378899999999999997 478
Q ss_pred cceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEE
Q 028802 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw 150 (203)
++..|.. |..+|+++ |+|+|.++++|+.||.|.+|++++++..+.+.+. + .|..++|+.+|.+|..+..|+.+++.
T Consensus 444 ~i~~f~k-H~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~-~Ifel~Wn~~G~kl~~~~sd~~vcvl 520 (524)
T KOG0273|consen 444 PIHTLMK-HQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-G-GIFELCWNAAGDKLGACASDGSVCVL 520 (524)
T ss_pred eeEeecc-CCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCC-C-eEEEEEEcCCCCEEEEEecCCCceEE
Confidence 8999999 99999999 9999999999999999999999999999998876 4 59999999999999999999999999
Q ss_pred eCC
Q 028802 151 DLD 153 (203)
Q Consensus 151 d~~ 153 (203)
|++
T Consensus 521 dlr 523 (524)
T KOG0273|consen 521 DLR 523 (524)
T ss_pred Eec
Confidence 986
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-23 Score=152.45 Aligned_cols=158 Identities=13% Similarity=0.149 Sum_probs=138.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
++.+|+.+++++|+.|...++|++.++.....+.+|...|+++.|+.+|.+|++|+.+|.|+||+..+........ . .
T Consensus 70 vsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~-~-e 147 (399)
T KOG0296|consen 70 VSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD-Q-E 147 (399)
T ss_pred EEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee-c-c
Confidence 3578988999999999999999999999999999999999999999999999999999999999998654444333 2 3
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
...+-=+ |+|.+..+++|+.||.|.+|.+.++...+.+.+|.. ++++-.|.|+|+.++++..||+|++|++.++.+..
T Consensus 148 ~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~-~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~ 226 (399)
T KOG0296|consen 148 VEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNS-PCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLH 226 (399)
T ss_pred cCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCC-CcccccccCCCceEEEEecCceEEEEecCCCceeE
Confidence 3444445 899999999999999999999999888889999954 89999999999999999999999999999997765
Q ss_pred CC
Q 028802 160 GN 161 (203)
Q Consensus 160 ~~ 161 (203)
..
T Consensus 227 ~~ 228 (399)
T KOG0296|consen 227 KI 228 (399)
T ss_pred Ee
Confidence 43
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-24 Score=172.23 Aligned_cols=157 Identities=14% Similarity=0.277 Sum_probs=148.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
++|+|....++++-..|.|++||.+-+.++..+..|.++|..++|+|...++++|+.|-.|+||+... ..++.++.+ |
T Consensus 15 lsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~-rrclftL~G-H 92 (1202)
T KOG0292|consen 15 LSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT-RRCLFTLLG-H 92 (1202)
T ss_pred eecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc-ceehhhhcc-c
Confidence 58999999999999999999999999999999999999999999999999999999999999999974 688999999 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
-..|+.+ |++..++|++++.|.+|+||+..+++++..+++|.. -|.|..|+|....+++++.|.+|+|||+.....+.
T Consensus 93 lDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnH-YVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~ 171 (1202)
T KOG0292|consen 93 LDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNH-YVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKN 171 (1202)
T ss_pred cceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCce-EEEeeccCCccceEEEecccceEEEEeecchhccC
Confidence 9999999 899999999999999999999999999999999966 69999999999999999999999999998877664
Q ss_pred C
Q 028802 160 G 160 (203)
Q Consensus 160 ~ 160 (203)
.
T Consensus 172 ~ 172 (1202)
T KOG0292|consen 172 K 172 (1202)
T ss_pred C
Confidence 4
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.9e-25 Score=163.60 Aligned_cols=154 Identities=14% Similarity=0.175 Sum_probs=139.9
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCC-CeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028802 1 MTFAA-DAMKLLGTSGDGTLSVCNLRK-NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
+.|.| .+.+|++++.|+.|+||++.. +.+++++.+|..+|..++|+.+|..+++++.|+.+++||+.+ +.+...+..
T Consensus 220 i~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtET-G~~~~~f~~ 298 (503)
T KOG0282|consen 220 IQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTET-GQVLSRFHL 298 (503)
T ss_pred hhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecccc-ceEEEEEec
Confidence 35777 788899999999999999976 789999999999999999999999999999999999999986 678888874
Q ss_pred CCCCceeEE-EeeCC-CEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 79 LSPNSVDAL-LKLDE-DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~-~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
...++|+ |+|++ +.+++|..++.|+.||+++++.++.+..|.+ +|..+.|-++|+++++.+.|++++||+.+..-
T Consensus 299 --~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg-~i~~i~F~~~g~rFissSDdks~riWe~~~~v 375 (503)
T KOG0282|consen 299 --DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLG-AILDITFVDEGRRFISSSDDKSVRIWENRIPV 375 (503)
T ss_pred --CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhh-heeeeEEccCCceEeeeccCccEEEEEcCCCc
Confidence 6678888 99998 8899999999999999999999999988865 89999999999999999999999999988775
Q ss_pred cC
Q 028802 157 KG 158 (203)
Q Consensus 157 ~~ 158 (203)
+.
T Consensus 376 ~i 377 (503)
T KOG0282|consen 376 PI 377 (503)
T ss_pred cc
Confidence 43
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-24 Score=170.09 Aligned_cols=154 Identities=20% Similarity=0.250 Sum_probs=129.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC--------------------------------C---------------------
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRK--------------------------------N--------------------- 27 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~--------------------------------~--------------------- 27 (203)
|.||+||++||+|+.|+.|+||.+.. .
T Consensus 273 mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~ 352 (712)
T KOG0283|consen 273 MKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPL 352 (712)
T ss_pred EEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCC
Confidence 57999999999999999999998754 0
Q ss_pred -------eEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE-Eee-CCCEEEEE
Q 028802 28 -------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKL-DEDRVITG 98 (203)
Q Consensus 28 -------~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~ 98 (203)
++++.+.+|.+-|..|.|+.+ ++|++++.|.+|++|++. ...++..|. |..-|+|+ |+| |.+++++|
T Consensus 353 ~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~-~~~CL~~F~--HndfVTcVaFnPvDDryFiSG 428 (712)
T KOG0283|consen 353 KAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPG-RKECLKVFS--HNDFVTCVAFNPVDDRYFISG 428 (712)
T ss_pred ccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCC-CcceeeEEe--cCCeeEEEEecccCCCcEeec
Confidence 012244568888999999964 689999999999999997 467888777 89999999 999 78999999
Q ss_pred cCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028802 99 SENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 99 ~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
+.||.|+||++...+...-...+ + -|++++|.|||++.+.|+.+|.+++|++........
T Consensus 429 SLD~KvRiWsI~d~~Vv~W~Dl~-~-lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~ 488 (712)
T KOG0283|consen 429 SLDGKVRLWSISDKKVVDWNDLR-D-LITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSD 488 (712)
T ss_pred ccccceEEeecCcCeeEeehhhh-h-hheeEEeccCCceEEEEEeccEEEEEEccCCeEEEe
Confidence 99999999999876665444444 4 699999999999999999999999999988765543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.4e-24 Score=163.71 Aligned_cols=156 Identities=15% Similarity=0.202 Sum_probs=142.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC-eEEEeecCCcccEEEEEEee-CCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKN-TVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
++.+|...++++++.|-+|++||.+.+ .+.+++++|..-|.+++|+| |.+.+++++-|++|+||.+.. ..+..++.+
T Consensus 103 iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs-~~~nfTl~g 181 (794)
T KOG0276|consen 103 IAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS-PHPNFTLEG 181 (794)
T ss_pred eeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCC-CCCceeeec
Confidence 467899999999999999999999864 78899999999999999999 778999999999999999974 567788999
Q ss_pred CCCCceeEE-Ee--eCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 79 LSPNSVDAL-LK--LDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 79 ~~~~~v~~~-~~--~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
|...|.|+ +- ++-+++++|+.|..|+|||.++..+++++.+|+. .|..+.|+|.=..+++|+.||+++||...|.
T Consensus 182 -HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty 259 (794)
T KOG0276|consen 182 -HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTY 259 (794)
T ss_pred -cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc-cceEEEecCCCcEEEEecCCccEEEecCcce
Confidence 99999999 64 4568999999999999999999999999999976 8999999999999999999999999998887
Q ss_pred ccCC
Q 028802 156 LKGS 159 (203)
Q Consensus 156 ~~~~ 159 (203)
.+..
T Consensus 260 ~lE~ 263 (794)
T KOG0276|consen 260 KLEK 263 (794)
T ss_pred ehhh
Confidence 7653
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=160.33 Aligned_cols=143 Identities=8% Similarity=0.054 Sum_probs=121.5
Q ss_pred EcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeC-CCEEEEecCCCeEEEEEcCCccc-------cceeeecCCCCce
Q 028802 13 TSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKD-------CSDRFVGLSPNSV 84 (203)
Q Consensus 13 ~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~~~~~d~~i~v~d~~~~~~-------~~~~~~~~~~~~v 84 (203)
|+.++.|++|+......+..+.+|...|.+++|+|+ +.+|++|+.|+.|++||+..... ++..+.+ |...|
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g-H~~~V 128 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG-HKKKI 128 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec-CCCcE
Confidence 445788999998777778889999999999999996 78999999999999999974322 2345677 88999
Q ss_pred eEE-EeeCCCEE-EEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 85 DAL-LKLDEDRV-ITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 85 ~~~-~~~~~~~l-~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.++ |+|++..+ ++++.|+.|++||+++++.+..+..+ . .|.+++|+|+|.+|++++.|+.|+|||++++...
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~-~-~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMP-K-KLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA 202 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecC-C-cEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE
Confidence 999 99998765 68899999999999998877766533 4 7999999999999999999999999999987654
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-23 Score=146.06 Aligned_cols=153 Identities=16% Similarity=0.176 Sum_probs=132.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC-CeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRK-NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
+.|+|+|.+||+|+.|..|.+|+... -+-...+++|.+.|..+.|.+|++.|++++.|.+++.||..+ ++....+..
T Consensus 53 ~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t-G~~~rk~k~- 130 (338)
T KOG0265|consen 53 IKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET-GKRIRKHKG- 130 (338)
T ss_pred EEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc-ceeeehhcc-
Confidence 36999999999999999999999654 355678889999999999999999999999999999999986 677888888
Q ss_pred CCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028802 80 SPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 80 ~~~~v~~~-~~~-~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
|..-+..+ -+. ...++.+++.|+++++||+++..+++++.... .++++.|..++..+.+|+-|+.|++||++....
T Consensus 131 h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~ky--qltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~ 208 (338)
T KOG0265|consen 131 HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKY--QLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDG 208 (338)
T ss_pred ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccce--eEEEEEecccccceeeccccCceeeeccccCcc
Confidence 88888877 233 33456678889999999999999998887653 699999999999999999999999999976543
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-23 Score=146.09 Aligned_cols=156 Identities=22% Similarity=0.295 Sum_probs=138.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCC-CEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
+.|.+|+..|++++.|.+|+.||+++|+.+..+++|..-++++.-+.-| .++.+++.|+++++||++. +..++++.
T Consensus 96 l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~-k~~~~t~~-- 172 (338)
T KOG0265|consen 96 LHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK-KEAIKTFE-- 172 (338)
T ss_pred eeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc-cchhhccc--
Confidence 4688999999999999999999999999999999999999988854444 4566788899999999985 56666665
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
....++++ |..++..+.+|+.|+.|++||++.+..+.++.+|.+ .|+.+..+|+|.++.+-+.|.++++||++..-+.
T Consensus 173 ~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~ 251 (338)
T KOG0265|consen 173 NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS 251 (338)
T ss_pred cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccC-ceeeEEeccCCCccccccccceEEEEEecccCCC
Confidence 36778888 999999999999999999999999999999999977 8999999999999999999999999999987665
Q ss_pred CC
Q 028802 159 SG 160 (203)
Q Consensus 159 ~~ 160 (203)
+.
T Consensus 252 ~R 253 (338)
T KOG0265|consen 252 QR 253 (338)
T ss_pred Cc
Confidence 54
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.9e-22 Score=146.36 Aligned_cols=155 Identities=23% Similarity=0.365 Sum_probs=137.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++++.+|.|++|++.++.....+..|...+..+.|+|++++|++++.++.+++|++.. ......+.. +
T Consensus 15 ~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~-~~~~~~~~~-~ 92 (289)
T cd00200 15 VAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET-GECVRTLTG-H 92 (289)
T ss_pred EEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc-ccceEEEec-c
Confidence 47899999999999999999999998887788888888999999999999999999999999999974 356667777 8
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
...+.++ |+|++.++++++.++.|.+|++.+++....+..|.. .+.++.|+|++.++++++.++.|++||+++....
T Consensus 93 ~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~ 170 (289)
T cd00200 93 TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTD-WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCV 170 (289)
T ss_pred CCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCC-cEEEEEEcCcCCEEEEEcCCCcEEEEEccccccc
Confidence 8889999 899988888888899999999998888888887754 7999999999889888888999999999866543
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-23 Score=163.82 Aligned_cols=151 Identities=22% Similarity=0.267 Sum_probs=142.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
+++||||++||++--|++++||-+.+-+....+.+|.-||.|+.++||+..+++|+.|.+|++|-+. .+.+.+.+.+ |
T Consensus 514 v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLd-FGDCHKS~fA-H 591 (888)
T KOG0306|consen 514 VSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD-FGDCHKSFFA-H 591 (888)
T ss_pred EEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccc-cchhhhhhhc-c
Confidence 4689999999999999999999999999888999999999999999999999999999999999997 4788899999 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
...|.++ |-|....+.+++.|+.|+-||-.....++.+.+|.. .|++++.+|+|.++++++.|..|++|.-..
T Consensus 592 dDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~-ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 592 DDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHS-EVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred cCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchh-eeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 9999999 999999999999999999999998999999999965 899999999999999999999999998654
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.5e-23 Score=142.92 Aligned_cols=155 Identities=17% Similarity=0.264 Sum_probs=130.9
Q ss_pred CcccccC-CEEEEEcCCCeEEEEEcCC-CeEEEeecCCcccEEEEEEee-CCCEEEEecCCCeEEEEEcCCccccceeee
Q 028802 1 MTFAADA-MKLLGTSGDGTLSVCNLRK-NTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~-~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 77 (203)
++|+++. +.+++++.||++++||+.. ..++..++.|...|.++.|++ .++.+++++.|++|++|+.. .+..+.++.
T Consensus 66 V~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~-r~~Sv~Tf~ 144 (311)
T KOG0277|consen 66 VAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPN-RPNSVQTFN 144 (311)
T ss_pred eeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCC-CCcceEeec
Confidence 5788875 5778889999999999753 367888999999999999998 55678888999999999986 467788999
Q ss_pred cCCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeC-CCCeEEEEeCCCcEEEEeCCC
Q 028802 78 GLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 78 ~~~~~~v~~~-~~~-~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~ 154 (203)
+ |...|... |+| .++++++++.|+.+++||++.......+..|. ..|.++.|+. +.+.|+|++.|+.|++||+++
T Consensus 145 g-h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~-~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~ 222 (311)
T KOG0277|consen 145 G-HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHN-SEILCCDWSKYNHNVLATGGVDNLVRGWDIRN 222 (311)
T ss_pred C-CccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEecc-ceeEeecccccCCcEEEecCCCceEEEEehhh
Confidence 9 99999988 888 57899999999999999998644344488885 4799999987 557789999999999999998
Q ss_pred cccC
Q 028802 155 ILKG 158 (203)
Q Consensus 155 ~~~~ 158 (203)
....
T Consensus 223 ~r~p 226 (311)
T KOG0277|consen 223 LRTP 226 (311)
T ss_pred cccc
Confidence 7643
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-22 Score=151.80 Aligned_cols=154 Identities=17% Similarity=0.245 Sum_probs=136.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeec---CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE---FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 77 (203)
+.|||||.++++++.||++.+||-.+++.+..+. +|.+.|..|+|+||+..+++++.|.++++||+.. ..+++++.
T Consensus 196 VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~-~slv~t~~ 274 (603)
T KOG0318|consen 196 VRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVST-NSLVSTWP 274 (603)
T ss_pred EEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeec-cceEEEee
Confidence 4699999999999999999999999999999887 8999999999999999999999999999999975 46666654
Q ss_pred c---CCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 78 G---LSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 78 ~---~~~~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
. .....+.|+|. ...|++.+.+|.|.+++.....++.++.+|.. .|+++..+|++.+|++++.||.|.-|+..+
T Consensus 275 ~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK-~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~ 351 (603)
T KOG0318|consen 275 MGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNK-SITALTVSPDGKTIYSGSYDGHINSWDSGS 351 (603)
T ss_pred cCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheeccccc-ceeEEEEcCCCCEEEeeccCceEEEEecCC
Confidence 3 01234566664 66889999999999999999899999999976 899999999999999999999999999988
Q ss_pred cccC
Q 028802 155 ILKG 158 (203)
Q Consensus 155 ~~~~ 158 (203)
+.+.
T Consensus 352 g~~~ 355 (603)
T KOG0318|consen 352 GTSD 355 (603)
T ss_pred cccc
Confidence 8765
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-22 Score=140.42 Aligned_cols=157 Identities=20% Similarity=0.204 Sum_probs=132.3
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCC
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 81 (203)
.|+-+|++.++++.|.+|++|+...+.++.+..+|...|..++.+.|+..|++++.|..+.+||+.+ ++..+.+.+ |.
T Consensus 24 ryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T-Gkv~Rr~rg-H~ 101 (307)
T KOG0316|consen 24 RYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT-GKVDRRFRG-HL 101 (307)
T ss_pred EEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc-Ceeeeeccc-cc
Confidence 5788999999999999999999999999999999999999999999999999999999999999985 688999999 99
Q ss_pred CceeEE-EeeCCCEEEEEcCCCcEEEEEccCC--ceeeeeccCCC-----------------------------------
Q 028802 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPN--RIIQPIAEHSE----------------------------------- 123 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~--~~~~~~~~~~~----------------------------------- 123 (203)
+.|..+ |+.+...+++|+.|..+++||.++. ++++++....+
T Consensus 102 aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy 181 (307)
T KOG0316|consen 102 AQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDY 181 (307)
T ss_pred ceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhh
Confidence 999999 9999999999999999999998764 45554432211
Q ss_pred --cceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028802 124 --YPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 124 --~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
.+|+++.|+++++.++.++.|++|++.|-.+++.-+.
T Consensus 182 ~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~s 220 (307)
T KOG0316|consen 182 FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKS 220 (307)
T ss_pred cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHH
Confidence 2567777777777777777777777777666666543
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-23 Score=150.21 Aligned_cols=154 Identities=18% Similarity=0.251 Sum_probs=142.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
+++|+-..+|++++.|+.|+-||+..++.++.+-+|-+.|.+++.+|.-..|++++.|.+++|||+++ ...+..+.+ |
T Consensus 199 vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRt-r~~V~~l~G-H 276 (460)
T KOG0285|consen 199 VAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT-RASVHVLSG-H 276 (460)
T ss_pred eeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecc-cceEEEecC-C
Confidence 57889999999999999999999999999999999999999999999999999999999999999996 578889999 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
..+|..+ +.|....+++|+.|++|++||++.|+...++..|.. .+.+++.+|....+|+++.| .|+-|++..+.-.
T Consensus 277 ~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkk-svral~lhP~e~~fASas~d-nik~w~~p~g~f~ 353 (460)
T KOG0285|consen 277 TNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKK-SVRALCLHPKENLFASASPD-NIKQWKLPEGEFL 353 (460)
T ss_pred CCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccc-eeeEEecCCchhhhhccCCc-cceeccCCccchh
Confidence 9999999 888889999999999999999999999999998865 89999999999999999876 6899999776543
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.1e-22 Score=145.47 Aligned_cols=157 Identities=23% Similarity=0.307 Sum_probs=137.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
+.|+|++++|++++.++.|++|++.+++.+..+..|...+.++.|++++.++++++.++.+.+|++.. ......+.. +
T Consensus 57 ~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~-~ 134 (289)
T cd00200 57 VAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET-GKCLTTLRG-H 134 (289)
T ss_pred EEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC-cEEEEEecc-C
Confidence 46889999999999999999999998878888888888999999999988888888899999999974 456666777 8
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
...+.++ |+|++.++++++.++.|++||+++++.+..+..|.. .+.++.|+|+++.+++++.++.|++||+++.....
T Consensus 135 ~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~ 213 (289)
T cd00200 135 TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG 213 (289)
T ss_pred CCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCcc-ccceEEECCCcCEEEEecCCCcEEEEECCCCceec
Confidence 8889999 999999999888899999999998888888887754 79999999999999999999999999998765443
Q ss_pred C
Q 028802 160 G 160 (203)
Q Consensus 160 ~ 160 (203)
.
T Consensus 214 ~ 214 (289)
T cd00200 214 T 214 (289)
T ss_pred c
Confidence 3
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-22 Score=155.98 Aligned_cols=154 Identities=18% Similarity=0.223 Sum_probs=141.5
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCC
Q 028802 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 82 (203)
|-+--+.+++|+.|..|+||+..+++.+..+..|..-|++++.+|.-.++++++.|-.|++||....-.+.++|.+ |..
T Consensus 63 fiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeG-H~H 141 (794)
T KOG0276|consen 63 FIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEG-HEH 141 (794)
T ss_pred eeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcC-cce
Confidence 3445578999999999999999999999999999999999999999999999999999999999987788899999 999
Q ss_pred ceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeC--CCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 83 SVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH--DRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 83 ~v~~~-~~~-~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
-|.++ |+| |.+.+++++.|++|+||.+.+..+..++.+|.. .|.++.+-+ |..+|++|+.|.+|+|||..+..+-
T Consensus 142 yVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHek-GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV 220 (794)
T KOG0276|consen 142 YVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEK-GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCV 220 (794)
T ss_pred EEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeecccc-CcceEEeccCCCcceEEecCCCceEEEeecchHHHH
Confidence 99999 888 678999999999999999999999999999966 899999987 4479999999999999999887654
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=145.21 Aligned_cols=153 Identities=16% Similarity=0.261 Sum_probs=129.4
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCC------------------CeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEE
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRK------------------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLL 63 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~------------------~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v 63 (203)
+|||||.++++|+.|..|+|.|++. ...++++..|...|+++.|+|....|++++.|++|++
T Consensus 119 afs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKl 198 (430)
T KOG0640|consen 119 AFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKL 198 (430)
T ss_pred eeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEE
Confidence 6999999999999999999999861 1356777889999999999999999999999999999
Q ss_pred EEcCCcc--ccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeee---ccCCCcceEEEEEeCCCCe
Q 028802 64 YSWGYFK--DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI---AEHSEYPIESLALSHDRKF 137 (203)
Q Consensus 64 ~d~~~~~--~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~ 137 (203)
||+.... +..+.|. ...++.++ |+|.|.+++.|.....+++||+.+.++...- ..|++ .|+++.+++.++.
T Consensus 199 FDfsK~saKrA~K~~q--d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~-ai~~V~Ys~t~~l 275 (430)
T KOG0640|consen 199 FDFSKTSAKRAFKVFQ--DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG-AITQVRYSSTGSL 275 (430)
T ss_pred EecccHHHHHHHHHhh--ccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccc-ceeEEEecCCccE
Confidence 9996421 2223344 46789999 9999999999999999999999998876443 34544 8999999999999
Q ss_pred EEEEeCCCcEEEEeCCCccc
Q 028802 138 LGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 138 l~~~~~d~~i~iwd~~~~~~ 157 (203)
.++++.||.|++||--+..+
T Consensus 276 YvTaSkDG~IklwDGVS~rC 295 (430)
T KOG0640|consen 276 YVTASKDGAIKLWDGVSNRC 295 (430)
T ss_pred EEEeccCCcEEeeccccHHH
Confidence 99999999999999665544
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=164.46 Aligned_cols=149 Identities=17% Similarity=0.233 Sum_probs=128.2
Q ss_pred cccc-cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEee-CCCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 2 TFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
+|+| ++.+|++++.||+|++||+.+++.+..+.+|...|++++|+| ++.+|++++.|+.|++||+.. +..+..+..
T Consensus 539 ~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~-~~~~~~~~~- 616 (793)
T PLN00181 539 CWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ-GVSIGTIKT- 616 (793)
T ss_pred EeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC-CcEEEEEec-
Confidence 5666 467899999999999999999999999999999999999997 789999999999999999975 455666664
Q ss_pred CCCceeEE-E-eeCCCEEEEEcCCCcEEEEEccCCc-eeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 80 SPNSVDAL-L-KLDEDRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 80 ~~~~v~~~-~-~~~~~~l~~~~~dg~v~v~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
+ ..+.++ | .+++.+|++|+.||.|++||++..+ .+..+.+|.. .|.++.|. ++.+|++++.|+.|++||++..
T Consensus 617 ~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~-~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~ 692 (793)
T PLN00181 617 K-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSK-TVSYVRFV-DSSTLVSSSTDNTLKLWDLSMS 692 (793)
T ss_pred C-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCC-CEEEEEEe-CCCEEEEEECCCEEEEEeCCCC
Confidence 3 567777 7 4679999999999999999998765 5667788855 89999997 6789999999999999999754
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.7e-23 Score=149.35 Aligned_cols=155 Identities=15% Similarity=0.264 Sum_probs=145.2
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCC
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 81 (203)
-|+|+-..+++++.|++|++||..++++...+++|...+..++|+..|.+|++++.|-.+++||+.....+++.+.+ |.
T Consensus 115 ~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~g-h~ 193 (406)
T KOG0295|consen 115 IFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIG-HE 193 (406)
T ss_pred eeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcC-cc
Confidence 46888889999999999999999999999999999999999999999999999999999999999865677888888 99
Q ss_pred CceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
..|.++ |-|.|.+|++++.|.+|+.|++.++.++.++.+|.+ .|..+..+.||..+++++.|.+|++|-+.+.++.
T Consensus 194 h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e-wvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k 270 (406)
T KOG0295|consen 194 HGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE-WVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCK 270 (406)
T ss_pred cceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchH-hEEEEEecCCeeEEEecCCCceEEEEEeccchhh
Confidence 999999 899999999999999999999999999999999977 8999999999999999999999999999998554
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.2e-23 Score=151.53 Aligned_cols=153 Identities=15% Similarity=0.295 Sum_probs=121.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeec-CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCc----------
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF---------- 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~---------- 69 (203)
+.||||.++|++++.+..+.+||+.+|.....+. ++...+.+++|.|||..+++|+.|+.+..||+...
T Consensus 275 i~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~ 354 (519)
T KOG0293|consen 275 IMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRD 354 (519)
T ss_pred EEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccccccc
Confidence 4799999999999999999999999998876664 34578899999999999999999999999988521
Q ss_pred -----------cc-------------------------------------------------------------cceeee
Q 028802 70 -----------KD-------------------------------------------------------------CSDRFV 77 (203)
Q Consensus 70 -----------~~-------------------------------------------------------------~~~~~~ 77 (203)
++ .+..+.
T Consensus 355 ~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~ 434 (519)
T KOG0293|consen 355 PKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYF 434 (519)
T ss_pred ceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhh
Confidence 00 000001
Q ss_pred cCCCCc---eeEEE-eeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCC-CeEEEEeCCCcEEEEeC
Q 028802 78 GLSPNS---VDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDL 152 (203)
Q Consensus 78 ~~~~~~---v~~~~-~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~ 152 (203)
+ |... |.++| -.+..++++|++|+.|++|+..+++++..+.+|.. .|.+++|+|.. ..+|+++.||+|+||-.
T Consensus 435 G-hkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~-~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 435 G-HKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK-TVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred c-ccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc-eeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 1 2111 22223 22446899999999999999999999999999976 89999999965 57899999999999987
Q ss_pred CCc
Q 028802 153 DDI 155 (203)
Q Consensus 153 ~~~ 155 (203)
...
T Consensus 513 ~~~ 515 (519)
T KOG0293|consen 513 SDN 515 (519)
T ss_pred Ccc
Confidence 644
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.1e-23 Score=162.33 Aligned_cols=153 Identities=21% Similarity=0.346 Sum_probs=131.3
Q ss_pred cccc-cCCEEEEEcCCCeEEEEEcCC---CeEEEeecCCcccEEEEEEee-CCCEEEEecCCCeEEEEEcCCccccceee
Q 028802 2 TFAA-DAMKLLGTSGDGTLSVCNLRK---NTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 2 ~~sp-~~~~l~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 76 (203)
.|+. ..++||+++..|.|.+||+.. .+.+..+..|...++++.|++ ..++|++|+.||.|++||++. .....++
T Consensus 94 kW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~-~~S~~t~ 172 (839)
T KOG0269|consen 94 KWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS-KKSKSTF 172 (839)
T ss_pred ccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec-ccccccc
Confidence 3443 357899999999999999986 456667888999999999998 457889999999999999985 4566677
Q ss_pred ecCCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccC-CceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 77 VGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~-~~~~l~~~~~dg~v~v~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
.+ ....|+.+ |+| .+.+++++...|.|++||++. .++...+.+|.+ +|.++.|+|++.+||+|+.|+.|+||++.
T Consensus 173 ~~-nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~G-pV~c~nwhPnr~~lATGGRDK~vkiWd~t 250 (839)
T KOG0269|consen 173 RS-NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNG-PVLCLNWHPNREWLATGGRDKMVKIWDMT 250 (839)
T ss_pred cc-cchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccC-ceEEEeecCCCceeeecCCCccEEEEecc
Confidence 77 78889999 887 578899999999999999984 567788999966 99999999999999999999999999998
Q ss_pred Cccc
Q 028802 154 DILK 157 (203)
Q Consensus 154 ~~~~ 157 (203)
+...
T Consensus 251 ~~~~ 254 (839)
T KOG0269|consen 251 DSRA 254 (839)
T ss_pred CCCc
Confidence 6543
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.1e-23 Score=161.38 Aligned_cols=155 Identities=18% Similarity=0.307 Sum_probs=132.4
Q ss_pred ccccc-CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEee-CCCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 2 TFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
.|++- ..+|++|+.||+|++||++...-..++.+....|..++|+| .+.+++++...|.+.+||++....+...+..
T Consensus 140 dfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~A- 218 (839)
T KOG0269|consen 140 DFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTA- 218 (839)
T ss_pred eeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhc-
Confidence 46654 46789999999999999998887788888888999999999 5688999999999999999988788888999
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCe-EEEEe--CCCcEEEEeCCCc
Q 028802 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF-LGSIS--HDSMLKLWDLDDI 155 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~--~d~~i~iwd~~~~ 155 (203)
|.++|.|+ |+|++.+|++|+.|+.|+||+..+.+.-....-++..++..+.|-|..++ |++++ .|-.|+|||++..
T Consensus 219 H~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP 298 (839)
T KOG0269|consen 219 HNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP 298 (839)
T ss_pred ccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccc
Confidence 99999999 99999999999999999999998765544444455568999999998765 66665 6888999999876
Q ss_pred cc
Q 028802 156 LK 157 (203)
Q Consensus 156 ~~ 157 (203)
..
T Consensus 299 YI 300 (839)
T KOG0269|consen 299 YI 300 (839)
T ss_pred cc
Confidence 53
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-22 Score=158.67 Aligned_cols=150 Identities=17% Similarity=0.236 Sum_probs=134.9
Q ss_pred CEEEEEcCCCeEEEEEcCCCe-----EEE----eecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028802 8 MKLLGTSGDGTLSVCNLRKNT-----VQT----RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 8 ~~l~~~~~d~~i~v~d~~~~~-----~~~----~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
.++++++.|.++++|++...+ ... ....|...|++++++|+..++++|+.|.+.++|++. .......+.+
T Consensus 425 sffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le-~~~l~~vLsG 503 (775)
T KOG0319|consen 425 SFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE-QLRLLGVLSG 503 (775)
T ss_pred cEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc-CceEEEEeeC
Confidence 478999999999999997621 111 224688999999999999999999999999999998 4678889999
Q ss_pred CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028802 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
|...++++ |+|..+.+++++.|.+|++|.+.+..+++++.+|.. .|.-+.|-.+|..|++++.||.|++|++.+..+
T Consensus 504 -H~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~-aVlra~F~~~~~qliS~~adGliKlWnikt~eC 581 (775)
T KOG0319|consen 504 -HTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTS-AVLRASFIRNGKQLISAGADGLIKLWNIKTNEC 581 (775)
T ss_pred -CccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccc-eeEeeeeeeCCcEEEeccCCCcEEEEeccchhh
Confidence 99999999 999999999999999999999999999999999965 899999999999999999999999999999887
Q ss_pred CCC
Q 028802 158 GSG 160 (203)
Q Consensus 158 ~~~ 160 (203)
...
T Consensus 582 ~~t 584 (775)
T KOG0319|consen 582 EMT 584 (775)
T ss_pred hhh
Confidence 643
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.7e-22 Score=137.41 Aligned_cols=112 Identities=17% Similarity=0.257 Sum_probs=95.1
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCC-ccccceeeecCC
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-FKDCSDRFVGLS 80 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~~ 80 (203)
+.+.|...+++|+.|..+.+||+.+|+.++.+.+|.+.|+.++|+.+...+++|+.|..+++||.+. ..++++.+.. .
T Consensus 66 ~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQilde-a 144 (307)
T KOG0316|consen 66 ALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDE-A 144 (307)
T ss_pred cccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhh-h
Confidence 3456777899999999999999999999999999999999999999999999999999999999975 2356777766 5
Q ss_pred CCceeEEEeeCCCEEEEEcCCCcEEEEEccCCcee
Q 028802 81 PNSVDALLKLDEDRVITGSENGLISLVGILPNRII 115 (203)
Q Consensus 81 ~~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~ 115 (203)
...|.++ .-.+..|+.|+.||+++.||++.|...
T Consensus 145 ~D~V~Si-~v~~heIvaGS~DGtvRtydiR~G~l~ 178 (307)
T KOG0316|consen 145 KDGVSSI-DVAEHEIVAGSVDGTVRTYDIRKGTLS 178 (307)
T ss_pred cCceeEE-EecccEEEeeccCCcEEEEEeecceee
Confidence 6667666 335678999999999999999876543
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-23 Score=150.20 Aligned_cols=147 Identities=20% Similarity=0.284 Sum_probs=113.4
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeC-------------------------------------
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN------------------------------------- 48 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~------------------------------------- 48 (203)
+.+.|++|+.|.+|+|||.++++++.++-+|...|..+.|+..
T Consensus 246 d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNv 325 (499)
T KOG0281|consen 246 DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV 325 (499)
T ss_pred cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheee
Confidence 5567889999999999999998887777777666666665421
Q ss_pred ----CCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCc
Q 028802 49 ----GRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY 124 (203)
Q Consensus 49 ----~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~ 124 (203)
.+++++++.|.+|++|++.+ ...+.++.+ |...|.|+ -..++++++|+.|.+|++||+..|.++..+.+|.+
T Consensus 326 Vdfd~kyIVsASgDRTikvW~~st-~efvRtl~g-HkRGIACl-QYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe- 401 (499)
T KOG0281|consen 326 VDFDDKYIVSASGDRTIKVWSTST-CEFVRTLNG-HKRGIACL-QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE- 401 (499)
T ss_pred eccccceEEEecCCceEEEEeccc-eeeehhhhc-ccccceeh-hccCeEEEecCCCceEEEEeccccHHHHHHhchHH-
Confidence 23566666666666666653 566667777 77777776 23578899999999999999999999999999965
Q ss_pred ceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 125 PIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 125 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
-|.++.| |...+++|+.||+|+|||+.+....
T Consensus 402 LvRciRF--d~krIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 402 LVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred hhhheee--cCceeeeccccceEEEEecccccCC
Confidence 7888888 5678999999999999999877543
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=163.38 Aligned_cols=152 Identities=14% Similarity=0.231 Sum_probs=130.3
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEe-eCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028802 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLM-KNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~-~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
|+|+| ++.+|++|+.|++|++||+.++..+..+..+ ..+.++.|+ +++.+|++|+.|+.|++||++.....+..+.+
T Consensus 581 l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~ 659 (793)
T PLN00181 581 IDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG 659 (793)
T ss_pred EEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecC
Confidence 46886 7889999999999999999998888777654 678999996 47899999999999999999864445667778
Q ss_pred CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC------CceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028802 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILP------NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 151 (203)
|...|.++ |. ++.+|++++.|+.|++||++. ..++..+.+|.. .+..++|+|++.+|++|+.|+.|++|+
T Consensus 660 -h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~-~i~~v~~s~~~~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 660 -HSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN-VKNFVGLSVSDGYIATGSETNEVFVYH 736 (793)
T ss_pred -CCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCC-CeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence 99999999 75 788999999999999999974 256778888855 789999999999999999999999999
Q ss_pred CCCcc
Q 028802 152 LDDIL 156 (203)
Q Consensus 152 ~~~~~ 156 (203)
.....
T Consensus 737 ~~~~~ 741 (793)
T PLN00181 737 KAFPM 741 (793)
T ss_pred CCCCC
Confidence 86553
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.9e-22 Score=137.42 Aligned_cols=152 Identities=18% Similarity=0.269 Sum_probs=128.1
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCC
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 81 (203)
.|....+.+++++.|++||+||.+++..++++.. ..+|.++.++++|++|.++. .+.|.+||..+. ..++.+.- +
T Consensus 150 ~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf-~~lKs~k~--P 224 (334)
T KOG0278|consen 150 LWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSF-GLLKSYKM--P 224 (334)
T ss_pred EEeccCceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEec-CceeEEeccccc-cceeeccC--c
Confidence 3556677888889999999999999999998876 57799999999998877654 578999998753 45555543 5
Q ss_pred CceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeee-ccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028802 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI-AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
..|.+. .+|+...+++|++|..++.||..++..+..+ .+|.+ +|.|+.|+|+|...++|+.||+|++|.+.......
T Consensus 225 ~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~g-pVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~~ 303 (334)
T KOG0278|consen 225 CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFG-PVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTYG 303 (334)
T ss_pred cccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCC-ceEEEEECCCCceeeccCCCceEEEEEecCCCchh
Confidence 566666 7999999999999999999999999999886 77765 99999999999999999999999999987665543
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.3e-22 Score=149.08 Aligned_cols=155 Identities=14% Similarity=0.246 Sum_probs=122.8
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCe--EEEeecCCcccEEEEEEeeCCCEEEEecCC----CeEEEEEcCCc------
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQS----GTVLLYSWGYF------ 69 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d----~~i~v~d~~~~------ 69 (203)
.|||.|-++|+|...|+|+|||..... +..+++.-.++|..|+|+++++.|+..++. |.+.+||..+.
T Consensus 66 kySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~G 145 (603)
T KOG0318|consen 66 KYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITG 145 (603)
T ss_pred EeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeec
Confidence 589999999999999999999987532 234555556788889998888877665542 34556665321
Q ss_pred ----------------------------------cccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCce
Q 028802 70 ----------------------------------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI 114 (203)
Q Consensus 70 ----------------------------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~ 114 (203)
-+....+.. |..-|.++ |+|+|.++++++.||.|.+||-.+|+.
T Consensus 146 hSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~-HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~ 224 (603)
T KOG0318|consen 146 HSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFRE-HSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK 224 (603)
T ss_pred cceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccc-cccceeeEEECCCCCeEEEecCCccEEEEcCCCccE
Confidence 011111223 56678999 999999999999999999999999999
Q ss_pred eeeec---cCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 115 IQPIA---EHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 115 ~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
+..+. +|.+ .|++++|+||+..+++++.|.+++|||+.+....
T Consensus 225 vg~l~~~~aHkG-sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv 270 (603)
T KOG0318|consen 225 VGELEDSDAHKG-SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLV 270 (603)
T ss_pred EEEecCCCCccc-cEEEEEECCCCceEEEecCCceEEEEEeeccceE
Confidence 98887 7855 8999999999999999999999999999887544
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.4e-22 Score=146.60 Aligned_cols=156 Identities=13% Similarity=0.252 Sum_probs=130.0
Q ss_pred CcccccC-CEEEEEcCCCeEEEEEcC--CCeEEEeecCCcccEEEEEEee-CCCEEEEecCCCeEEEEEcCCccccceee
Q 028802 1 MTFAADA-MKLLGTSGDGTLSVCNLR--KNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~-~~l~~~~~d~~i~v~d~~--~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 76 (203)
++|+|-. ..+++++.|+.+.|||++ +.++.....+|...|+|++|+| ++..|++|+.|++|.+||+++...++..+
T Consensus 233 V~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~ 312 (422)
T KOG0264|consen 233 VAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTF 312 (422)
T ss_pred hhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceec
Confidence 4677754 467889999999999999 4566677789999999999999 55678899999999999999888899999
Q ss_pred ecCCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccC-C-------------ceeeeeccCCCcceEEEEEeCCCCe-EE
Q 028802 77 VGLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILP-N-------------RIIQPIAEHSEYPIESLALSHDRKF-LG 139 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~-~~~l~~~~~dg~v~v~d~~~-~-------------~~~~~~~~~~~~~i~~~~~~~~~~~-l~ 139 (203)
.+ |...|.++ |+|. ...+++++.|+.+.|||+.. + +.+++..+|+. .|..+.|+|+..+ |+
T Consensus 313 e~-H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~-kV~DfsWnp~ePW~I~ 390 (422)
T KOG0264|consen 313 EG-HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-KVSDFSWNPNEPWTIA 390 (422)
T ss_pred cC-CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccc-ccccccCCCCCCeEEE
Confidence 99 99999999 9996 46777888999999999853 1 23466678855 8999999998876 56
Q ss_pred EEeCCCcEEEEeCCCcccC
Q 028802 140 SISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 140 ~~~~d~~i~iwd~~~~~~~ 158 (203)
+.+.|+.+.||.+....-.
T Consensus 391 SvaeDN~LqIW~~s~~i~~ 409 (422)
T KOG0264|consen 391 SVAEDNILQIWQMAENIYN 409 (422)
T ss_pred EecCCceEEEeeccccccC
Confidence 7889999999998754433
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.9e-22 Score=146.73 Aligned_cols=156 Identities=17% Similarity=0.245 Sum_probs=129.0
Q ss_pred CcccccCC-EEEEEcCCCeEEEEEcCCC-------eEEEeecCCcccEEEEEEee-CCCEEEEecCCCeEEEEEcCC-cc
Q 028802 1 MTFAADAM-KLLGTSGDGTLSVCNLRKN-------TVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGY-FK 70 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~i~v~d~~~~-------~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d~~~-~~ 70 (203)
|+|++... .|++++.|++|.+||+... .+...+.+|...|..++|++ +...|.+++.|+.+.|||++. ..
T Consensus 183 lsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~ 262 (422)
T KOG0264|consen 183 LSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS 262 (422)
T ss_pred cccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC
Confidence 56887654 7899999999999999743 23456788999999999999 456788999999999999995 23
Q ss_pred ccceeeecCCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccC-CceeeeeccCCCcceEEEEEeCCC-CeEEEEeCCCc
Q 028802 71 DCSDRFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSM 146 (203)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~dg~v~v~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~ 146 (203)
++.....+ |.+.+.|+ |+| ++..|++|+.|++|.+||++. .+++.++.+|.. .|..+.|+|.. ..||+++.|+.
T Consensus 263 ~~~~~~~a-h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~d-ev~~V~WSPh~etvLASSg~D~r 340 (422)
T KOG0264|consen 263 KPSHSVKA-HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHED-EVFQVEWSPHNETVLASSGTDRR 340 (422)
T ss_pred CCcccccc-cCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCc-ceEEEEeCCCCCceeEecccCCc
Confidence 45556677 99999999 988 567788999999999999986 357788999966 89999999965 67889999999
Q ss_pred EEEEeCCCcccC
Q 028802 147 LKLWDLDDILKG 158 (203)
Q Consensus 147 i~iwd~~~~~~~ 158 (203)
+.|||+..-...
T Consensus 341 l~vWDls~ig~e 352 (422)
T KOG0264|consen 341 LNVWDLSRIGEE 352 (422)
T ss_pred EEEEeccccccc
Confidence 999999765443
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.9e-22 Score=138.56 Aligned_cols=151 Identities=14% Similarity=0.156 Sum_probs=129.8
Q ss_pred ccccc-CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEee-CCCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 2 TFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
.|++- ...+++++.|++|++|+...++.++++.+|...|...+|+| ..+.+++++.|+.+++||++..++.+. +..
T Consensus 111 dwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~a- 188 (311)
T KOG0277|consen 111 DWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEA- 188 (311)
T ss_pred ccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEe-
Confidence 45553 45678889999999999999999999999999999999999 568999999999999999997766655 777
Q ss_pred CCCceeEE-Ee-eCCCEEEEEcCCCcEEEEEccCC-ceeeeeccCCCcceEEEEEeCCC-CeEEEEeCCCcEEEEeCCCc
Q 028802 80 SPNSVDAL-LK-LDEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 80 ~~~~v~~~-~~-~~~~~l~~~~~dg~v~v~d~~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~ 155 (203)
|...+.++ |+ .+.+.+++|+.|+.|+.||++.- .++..+.+| +.+|..+.|+|-. ..|++++.|=+++|||....
T Consensus 189 h~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh-~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ 267 (311)
T KOG0277|consen 189 HNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGH-GLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ 267 (311)
T ss_pred ccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCC-ceEEEEEecCcchhhHhhhccccceEEecccccc
Confidence 88889988 85 46788999999999999999864 578888999 5599999999965 57899999999999998644
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-22 Score=145.12 Aligned_cols=157 Identities=19% Similarity=0.289 Sum_probs=132.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEE--eecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce--ee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD--RF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~--~~ 76 (203)
|.|+|....|++|+.|++|+++|+......+ .......+|.+|.|+|.|.+|++|.....+++||+.+.+..+. .-
T Consensus 178 l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd 257 (430)
T KOG0640|consen 178 LDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPD 257 (430)
T ss_pred eeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcc
Confidence 5799999999999999999999998653322 2223467899999999999999999999999999986422221 12
Q ss_pred ecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeee-ccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI-AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
.. |.+.|.++ +++.+++.++++.||.|++||--+++++.++ ..|.+..|.+..|..+|+||++.+.|..+++|.+.+
T Consensus 258 ~q-ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t 336 (430)
T KOG0640|consen 258 DQ-HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIST 336 (430)
T ss_pred cc-cccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecC
Confidence 34 77889999 9999999999999999999998888998777 466566899999999999999999999999999988
Q ss_pred cccC
Q 028802 155 ILKG 158 (203)
Q Consensus 155 ~~~~ 158 (203)
+..-
T Consensus 337 ~R~l 340 (430)
T KOG0640|consen 337 GRML 340 (430)
T ss_pred CceE
Confidence 8653
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.2e-22 Score=146.61 Aligned_cols=155 Identities=19% Similarity=0.282 Sum_probs=135.6
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-CC
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-LS 80 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~ 80 (203)
.|+|+...+++++.|..|+||..........+..|..+|+.+..+|.|.||++++.|+...+.|++. +.++..... -.
T Consensus 268 ~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~-g~~lt~vs~~~s 346 (506)
T KOG0289|consen 268 KFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISS-GSQLTVVSDETS 346 (506)
T ss_pred EeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccC-CcEEEEEeeccc
Confidence 5788888999999999999999987777778889999999999999999999999999999999985 444444332 01
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.-.+++. |+|||..+.+|..|+.|++||+.++.....|.+|+. +|..++|+.+|-||++++.|+.|++||+|....-
T Consensus 347 ~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~-~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~ 424 (506)
T KOG0289|consen 347 DVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTG-PVKAISFSENGYWLATAADDGSVKLWDLRKLKNF 424 (506)
T ss_pred cceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCC-ceeEEEeccCceEEEEEecCCeEEEEEehhhccc
Confidence 2346777 999999999999999999999999999999999966 9999999999999999999999999999987643
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.1e-22 Score=153.58 Aligned_cols=155 Identities=15% Similarity=0.239 Sum_probs=138.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC-CcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
+.|+++|.+|++|..+|.|.|||..+.+.+..+.. |...|.+++|. +..+.+|+.++.|..+|++........+.+
T Consensus 223 v~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~- 299 (484)
T KOG0305|consen 223 VKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQG- 299 (484)
T ss_pred EEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhc-
Confidence 47999999999999999999999998888888888 99999999998 678899999999999999976555556788
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCC-CCeEEEEe--CCCcEEEEeCCCc
Q 028802 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHD-RKFLGSIS--HDSMLKLWDLDDI 155 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~--~d~~i~iwd~~~~ 155 (203)
|...|..+ |++++.++++|+.|+.+.|||.....+...+..|.. +|.+++|+|- ...||+|+ .|++|++|++.++
T Consensus 300 H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~a-AVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g 378 (484)
T KOG0305|consen 300 HRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTA-AVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG 378 (484)
T ss_pred ccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccce-eeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC
Confidence 99999999 999999999999999999999988888889999955 8999999994 46788876 7999999999988
Q ss_pred ccCC
Q 028802 156 LKGS 159 (203)
Q Consensus 156 ~~~~ 159 (203)
...+
T Consensus 379 ~~i~ 382 (484)
T KOG0305|consen 379 ARID 382 (484)
T ss_pred cEec
Confidence 6553
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-23 Score=163.56 Aligned_cols=158 Identities=22% Similarity=0.332 Sum_probs=145.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
|.|++...+|++|+.+|+|++||+...+.++++.+|...+.++.|+|-+.+++.++.|+.+++||.+. ..+...+.+ |
T Consensus 76 l~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk-~Gc~~~~~s-~ 153 (825)
T KOG0267|consen 76 LTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK-KGCSHTYKS-H 153 (825)
T ss_pred eecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhc-cCceeeecC-C
Confidence 46888888999999999999999999999999999999999999999999999999999999999984 567888898 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
...+.++ |+|+|++++.++.|..+++||+..|+.+..|..|.. .+.++.|+|..-.+++|+.|+++++||+++.+...
T Consensus 154 ~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~ 232 (825)
T KOG0267|consen 154 TRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS 232 (825)
T ss_pred cceeEEEeecCCCceeeccCCcceeeeecccccccccccccccc-cccccccCchhhhhccCCCCceeeeeccceeEEee
Confidence 9999999 999999999999999999999999999999999965 89999999999899999999999999999876554
Q ss_pred CC
Q 028802 160 GN 161 (203)
Q Consensus 160 ~~ 161 (203)
..
T Consensus 233 s~ 234 (825)
T KOG0267|consen 233 SG 234 (825)
T ss_pred cc
Confidence 43
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-21 Score=135.94 Aligned_cols=157 Identities=17% Similarity=0.179 Sum_probs=133.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee----
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF---- 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---- 76 (203)
|.|+.+|.+|++++.|.++.||-..+|+.+.++.+|.+.|+++....+..++++|+.|.++++||+.+. +++..+
T Consensus 16 iKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG-k~la~~k~~~ 94 (327)
T KOG0643|consen 16 IKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG-KQLATWKTNS 94 (327)
T ss_pred EEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC-cEEEEeecCC
Confidence 457889999999999999999999899999999999999999999999999999999999999999864 222221
Q ss_pred -------------------------------------------------ecCCCCceeEE-EeeCCCEEEEEcCCCcEEE
Q 028802 77 -------------------------------------------------VGLSPNSVDAL-LKLDEDRVITGSENGLISL 106 (203)
Q Consensus 77 -------------------------------------------------~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v 106 (203)
.. +...+... |.|.+.+|++|..+|.|..
T Consensus 95 ~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t-~~skit~a~Wg~l~~~ii~Ghe~G~is~ 173 (327)
T KOG0643|consen 95 PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT-PDSKITSALWGPLGETIIAGHEDGSISI 173 (327)
T ss_pred eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC-CccceeeeeecccCCEEEEecCCCcEEE
Confidence 11 23345555 8999999999999999999
Q ss_pred EEccCCce-eeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028802 107 VGILPNRI-IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 107 ~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
||+++|+. +.....|.. .|+.+.++++..++++++.|.+-++||.++.+....
T Consensus 174 ~da~~g~~~v~s~~~h~~-~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kt 227 (327)
T KOG0643|consen 174 YDARTGKELVDSDEEHSS-KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKT 227 (327)
T ss_pred EEcccCceeeechhhhcc-ccccccccCCcceEEecccCccceeeeccceeeEEE
Confidence 99999854 455577754 899999999999999999999999999999875533
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.2e-22 Score=149.22 Aligned_cols=158 Identities=18% Similarity=0.215 Sum_probs=124.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEE------------eecCCcccEEEEEEeeCC-CEEEEecCCCeEEEEEcC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT------------RSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~------------~~~~~~~~i~~l~~~~~~-~~l~~~~~d~~i~v~d~~ 67 (203)
++||+.|..|++.+....++|+|-..-.... ..++|...+++.+|+|.. ..+++++.||++++|++.
T Consensus 220 l~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~ 299 (641)
T KOG0772|consen 220 LQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVN 299 (641)
T ss_pred eeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecC
Confidence 5799999999888888899999965433332 225788899999999965 678999999999999998
Q ss_pred CccccceeeecC----CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc---eeeeeccCCC-cceEEEEEeCCCCeE
Q 028802 68 YFKDCSDRFVGL----SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR---IIQPIAEHSE-YPIESLALSHDRKFL 138 (203)
Q Consensus 68 ~~~~~~~~~~~~----~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~---~~~~~~~~~~-~~i~~~~~~~~~~~l 138 (203)
+....++.+... ..-+++.+ |+|+|++|+.|+.||.|++|+..... ....-.+|.. ..|++|+|+++|++|
T Consensus 300 ~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~L 379 (641)
T KOG0772|consen 300 NTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYL 379 (641)
T ss_pred CchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchh
Confidence 776666666530 12245556 99999999999999999999975432 2223345532 279999999999999
Q ss_pred EEEeCCCcEEEEeCCCcccC
Q 028802 139 GSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 139 ~~~~~d~~i~iwd~~~~~~~ 158 (203)
++-+.|+++++||++...+.
T Consensus 380 lSRg~D~tLKvWDLrq~kkp 399 (641)
T KOG0772|consen 380 LSRGFDDTLKVWDLRQFKKP 399 (641)
T ss_pred hhccCCCceeeeeccccccc
Confidence 99999999999999987543
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-21 Score=144.64 Aligned_cols=157 Identities=15% Similarity=0.167 Sum_probs=132.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC---eEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 77 (203)
+.||++|++||+++.|.+..+|.+-.. ++..++.+|..+|..+.|+||.++|++++.+..+.+||+.+ +.....+.
T Consensus 230 l~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~t-gd~~~~y~ 308 (519)
T KOG0293|consen 230 LQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDT-GDLRHLYP 308 (519)
T ss_pred EEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCc-chhhhhcc
Confidence 479999999999999999999997643 45778889999999999999999999999999999999986 45555554
Q ss_pred cCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
..+...+.++ |.|||..+++|+.|+.+..||+. |..+..+.+-....|.+++.++||.++++.+.|..|++|+..+..
T Consensus 309 ~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~ 387 (519)
T KOG0293|consen 309 SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARV 387 (519)
T ss_pred cCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhh
Confidence 3124556666 99999999999999999999986 566666666544479999999999999999999999999988776
Q ss_pred cCC
Q 028802 157 KGS 159 (203)
Q Consensus 157 ~~~ 159 (203)
.+.
T Consensus 388 dr~ 390 (519)
T KOG0293|consen 388 DRG 390 (519)
T ss_pred hhc
Confidence 653
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.6e-21 Score=139.55 Aligned_cols=149 Identities=16% Similarity=0.244 Sum_probs=129.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee----
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF---- 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---- 76 (203)
|.|+|-+..|++|+.||.+.+|.+.++...+.+.+|..++++=.|.|+|+.++++..||+|++|+..+. .++..+
T Consensus 154 l~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg-~p~~~~~~~e 232 (399)
T KOG0296|consen 154 LKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTG-QPLHKITQAE 232 (399)
T ss_pred EEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCC-ceeEEecccc
Confidence 579999999999999999999999998788899999999999999999999999999999999998642 111111
Q ss_pred --------------------------------------------------------------------------------
Q 028802 77 -------------------------------------------------------------------------------- 76 (203)
Q Consensus 77 -------------------------------------------------------------------------------- 76 (203)
T Consensus 233 ~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~i 312 (399)
T KOG0296|consen 233 GLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAI 312 (399)
T ss_pred cCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEE
Confidence
Q ss_pred -----------ecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCC
Q 028802 77 -----------VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 77 -----------~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 144 (203)
.. |...|..+ |-+ ..+|++++.+|.|+.||.++|+++.++.+|.. .|.+++++|+++++++++.|
T Consensus 313 yD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~-~Il~f~ls~~~~~vvT~s~D 389 (399)
T KOG0296|consen 313 YDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQM-GILDFALSPQKRLVVTVSDD 389 (399)
T ss_pred Eecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCch-heeEEEEcCCCcEEEEecCC
Confidence 01 44456666 655 67899999999999999999999999999955 89999999999999999999
Q ss_pred CcEEEEeCC
Q 028802 145 SMLKLWDLD 153 (203)
Q Consensus 145 ~~i~iwd~~ 153 (203)
++.+||+..
T Consensus 390 ~~a~VF~v~ 398 (399)
T KOG0296|consen 390 NTALVFEVP 398 (399)
T ss_pred CeEEEEecC
Confidence 999999874
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.8e-21 Score=151.83 Aligned_cols=150 Identities=21% Similarity=0.278 Sum_probs=133.1
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCC
Q 028802 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 82 (203)
|..-+.+|++|+.|.++++||+.++.+...+.+|...+.++... ..++++|+.|.+|++|++.+ +..+..+.+ |..
T Consensus 257 ~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n-~~~l~l~~~-h~~ 332 (537)
T KOG0274|consen 257 FPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTN-GACLNLLRG-HTG 332 (537)
T ss_pred EecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccC-cceEEEecc-ccc
Confidence 33347789999999999999999999999999999999888764 45778889999999999984 688899999 999
Q ss_pred ceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc-ccCCC
Q 028802 83 SVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI-LKGSG 160 (203)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~ 160 (203)
+|.++ .+ +.++++|+.|+.|.+|++.+++++..+.+|.. +|+++.+.+. ..+++|+.|++|++||+++. .+.+.
T Consensus 333 ~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~-~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~t 408 (537)
T KOG0274|consen 333 PVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTG-RVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHT 408 (537)
T ss_pred cEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcc-eEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhh
Confidence 99999 55 88999999999999999999999999999976 8999987665 89999999999999999999 54433
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-21 Score=141.85 Aligned_cols=150 Identities=19% Similarity=0.188 Sum_probs=126.8
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCC-------------------------CeEEEeecCCcccEEEEEEeeCCCEEEEec
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRK-------------------------NTVQTRSEFSEEELTSVVLMKNGRKVVCGS 56 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~-------------------------~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~ 56 (203)
+..++|.++++|+.|.+|.+|+... ..++..+.+|..+|.++.|++ ...+++++
T Consensus 200 sv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~S 278 (423)
T KOG0313|consen 200 SVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVS 278 (423)
T ss_pred EecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeec
Confidence 4568899999999999999999321 124457789999999999987 77899999
Q ss_pred CCCeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc---eeeeeccCCCcceEEEEEe
Q 028802 57 QSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR---IIQPIAEHSEYPIESLALS 132 (203)
Q Consensus 57 ~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~---~~~~~~~~~~~~i~~~~~~ 132 (203)
.|.+|++||+.+ +.....+.+ ...+.++ ++|..++|++|+.|..|++||.+++. ..+++.+|.. .|.++.|+
T Consensus 279 wDHTIk~WDlet-g~~~~~~~~--~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~n-wVssvkws 354 (423)
T KOG0313|consen 279 WDHTIKVWDLET-GGLKSTLTT--NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKN-WVSSVKWS 354 (423)
T ss_pred ccceEEEEEeec-ccceeeeec--CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchh-hhhheecC
Confidence 999999999986 455556664 6678888 89999999999999999999998753 4578889966 89999999
Q ss_pred CCCC-eEEEEeCCCcEEEEeCCCcc
Q 028802 133 HDRK-FLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 133 ~~~~-~l~~~~~d~~i~iwd~~~~~ 156 (203)
|... .|++++.|+++++||+++..
T Consensus 355 p~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 355 PTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred CCCceEEEEEecCCeEEEEEeccCC
Confidence 9765 57899999999999999876
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.4e-21 Score=142.85 Aligned_cols=156 Identities=17% Similarity=0.155 Sum_probs=128.8
Q ss_pred cccccCC-EEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeC-CCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 2 TFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
.|+|+++ .+++|+.|+.+++||+.+......+.+|...|.+.+|+|. +..+++|+.||.|++||++.....+..+.
T Consensus 117 ~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-- 194 (487)
T KOG0310|consen 117 KFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-- 194 (487)
T ss_pred EecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec--
Confidence 4788665 5678888999999999998876688999999999999995 45889999999999999987544444554
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCcee-eeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028802 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRII-QPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
|..+|..+ +-|.|..|++++.. .|+|||+-+|..+ ..+..|.. .|+|+.+..+++.|++++.|+.+++||+.+.+-
T Consensus 195 hg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~K-tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kv 272 (487)
T KOG0310|consen 195 HGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNK-TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKV 272 (487)
T ss_pred CCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccc-eEEEEEeecCCceEeecccccceEEEEccceEE
Confidence 78999999 88999999988764 6999999866554 44444755 899999999999999999999999999877765
Q ss_pred CCCC
Q 028802 158 GSGN 161 (203)
Q Consensus 158 ~~~~ 161 (203)
.+..
T Consensus 273 v~s~ 276 (487)
T KOG0310|consen 273 VHSW 276 (487)
T ss_pred EEee
Confidence 5443
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-21 Score=142.73 Aligned_cols=152 Identities=12% Similarity=0.180 Sum_probs=123.8
Q ss_pred CcccccC-CEEEEEcCCCeEEEEEcCCCeE---EEeecCCcccEEEEEEeeCC-CEEEEecCCCeEEEEEcCCcccc-ce
Q 028802 1 MTFAADA-MKLLGTSGDGTLSVCNLRKNTV---QTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDC-SD 74 (203)
Q Consensus 1 l~~sp~~-~~l~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~i~~l~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~-~~ 74 (203)
|.|||-. ..|++|.--+.|++|...++.- ...+.+|...|-.|+|+|.. ..|++|+.||+|+|||++..... ..
T Consensus 217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~ 296 (440)
T KOG0302|consen 217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV 296 (440)
T ss_pred eecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee
Confidence 5788832 3577877778999999887642 23556799999999999954 67889999999999999864222 22
Q ss_pred eeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC---CceeeeeccCCCcceEEEEEeCCC-CeEEEEeCCCcEEE
Q 028802 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP---NRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKL 149 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~---~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i 149 (203)
..+. |...|..+ |+....+|++|+.+|.++|||++. ++++.++..|.. +|+++.|+|.. ..|++++.|..|.+
T Consensus 297 ~~kA-h~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~-pItsieW~p~e~s~iaasg~D~Qiti 374 (440)
T KOG0302|consen 297 STKA-HNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA-PITSIEWHPHEDSVIAASGEDNQITI 374 (440)
T ss_pred Eeec-cCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccC-CeeEEEeccccCceEEeccCCCcEEE
Confidence 2355 99999999 988888999999999999999985 578889999965 99999999954 67888889999999
Q ss_pred EeCCC
Q 028802 150 WDLDD 154 (203)
Q Consensus 150 wd~~~ 154 (203)
||+..
T Consensus 375 WDlsv 379 (440)
T KOG0302|consen 375 WDLSV 379 (440)
T ss_pred EEeec
Confidence 99964
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-20 Score=134.30 Aligned_cols=157 Identities=18% Similarity=0.223 Sum_probs=127.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCc-cccceeeec-
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF-KDCSDRFVG- 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~- 78 (203)
|+.+|-+..+++++.|++|++||++..++...+.....+| ++|.|.|-+++++.....|++||++.. +.+...+.-
T Consensus 106 L~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~ 183 (311)
T KOG1446|consen 106 LSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSIT 183 (311)
T ss_pred EEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccC
Confidence 4578988999999999999999999777666555444444 789999999999998889999999864 344455443
Q ss_pred -CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcc--eEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 79 -LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP--IESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 79 -~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
........+ |+|+|++|+.++..+.+++.|.-+|..+.++..+.... .-+.+|+||++++++|+.||+|.+|++++
T Consensus 184 ~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 184 DNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLET 263 (311)
T ss_pred CCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCC
Confidence 024557778 99999999999999999999999999988888775421 24678999999999999999999999988
Q ss_pred cccCC
Q 028802 155 ILKGS 159 (203)
Q Consensus 155 ~~~~~ 159 (203)
+.+-.
T Consensus 264 g~~v~ 268 (311)
T KOG1446|consen 264 GKKVA 268 (311)
T ss_pred CcEee
Confidence 87553
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.1e-21 Score=133.58 Aligned_cols=156 Identities=18% Similarity=0.290 Sum_probs=128.9
Q ss_pred Cccccc-CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCc----------
Q 028802 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF---------- 69 (203)
Q Consensus 1 l~~sp~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~---------- 69 (203)
++|+|. ...+++++.|.+|++||++.+++...+....+ -..+.|+|+|.++++++.|..|...|.++.
T Consensus 70 l~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~e-ni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~ 148 (313)
T KOG1407|consen 70 LCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGE-NINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF 148 (313)
T ss_pred heeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCc-ceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccc
Confidence 356664 56889999999999999999998887765433 446789999999999999988888877532
Q ss_pred ------------------------------cccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeee
Q 028802 70 ------------------------------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI 118 (203)
Q Consensus 70 ------------------------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~ 118 (203)
-+++..++. |+....|+ |+|+|+++++|+.|-.+.+||+..--++..+
T Consensus 149 e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~A-H~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i 227 (313)
T KOG1407|consen 149 EVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKA-HPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI 227 (313)
T ss_pred eeeeeeecCCCCEEEEecCCceEEEEecccccccccccc-CCcceEEEEECCCCceEeeccccceeeccChhHhhhheee
Confidence 122333455 77788888 9999999999999999999999988888888
Q ss_pred ccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028802 119 AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 119 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
..+ +.+|..+.|+.+|++||+++.|..|-|=++.++..-.
T Consensus 228 sRl-dwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~ 267 (313)
T KOG1407|consen 228 SRL-DWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVW 267 (313)
T ss_pred ccc-cCceEEEEeccCcceeeccCccceEEeEecccCCeEE
Confidence 877 6699999999999999999999999888888876543
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.7e-21 Score=148.94 Aligned_cols=156 Identities=13% Similarity=0.205 Sum_probs=140.6
Q ss_pred CcccccCCEEEEEcC-CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 1 MTFAADAMKLLGTSG-DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
++|+.-|..||.|+. -|.+-||+.++...+...++|...+.+++++|||+++++|+.||.|+|||.. .+-+..+|..
T Consensus 313 ~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~-SgfC~vTFte- 390 (893)
T KOG0291|consen 313 VSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ-SGFCFVTFTE- 390 (893)
T ss_pred EEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEecc-CceEEEEecc-
Confidence 467788999998865 4899999999999999999999999999999999999999999999999997 4678999999
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCC-cEEEEeCCCccc
Q 028802 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS-MLKLWDLDDILK 157 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~ 157 (203)
|...++.+ |+..|+.+++++.||+|+.||+..++...+++.+......+++..|.|..++.|+.|. .|++|++.+++.
T Consensus 391 Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql 470 (893)
T KOG0291|consen 391 HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL 470 (893)
T ss_pred CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee
Confidence 99999999 9999999999999999999999999999999887655677888899999998888764 699999999875
Q ss_pred C
Q 028802 158 G 158 (203)
Q Consensus 158 ~ 158 (203)
-
T Consensus 471 l 471 (893)
T KOG0291|consen 471 L 471 (893)
T ss_pred e
Confidence 4
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.9e-22 Score=148.27 Aligned_cols=148 Identities=15% Similarity=0.301 Sum_probs=125.9
Q ss_pred CcccccC-CEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce-----
Q 028802 1 MTFAADA-MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD----- 74 (203)
Q Consensus 1 l~~sp~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~----- 74 (203)
+.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++|.++++++.++++++|+.+..- .++
T Consensus 305 vkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v-~ik~i~~~ 383 (503)
T KOG0282|consen 305 VKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPV-PIKNIADP 383 (503)
T ss_pred eecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCc-cchhhcch
Confidence 4688988 788999999999999999999999999999999999999999999999999999999986421 100
Q ss_pred -----------------------------------------eeecCCCCc--eeEE-EeeCCCEEEEEcCCCcEEEEEcc
Q 028802 75 -----------------------------------------RFVGLSPNS--VDAL-LKLDEDRVITGSENGLISLVGIL 110 (203)
Q Consensus 75 -----------------------------------------~~~~~~~~~--v~~~-~~~~~~~l~~~~~dg~v~v~d~~ 110 (203)
.+.+ |..+ -..+ |+|+|.+|++|+.+|.+.+||.+
T Consensus 384 ~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feG-h~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwk 462 (503)
T KOG0282|consen 384 EMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEG-HSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWK 462 (503)
T ss_pred hhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcc-eeccCceeeEEEcCCCCeEEeecCCccEEEeech
Confidence 1122 2222 2334 89999999999999999999999
Q ss_pred CCceeeeeccCCCcceEEEEEeCCC-CeEEEEeCCCcEEEEe
Q 028802 111 PNRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWD 151 (203)
Q Consensus 111 ~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd 151 (203)
+.+.+..+..|.+ ++..+.|+|.. ..+|+++.+|.|++|+
T Consensus 463 t~kl~~~lkah~~-~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 463 TTKLVSKLKAHDQ-PCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred hhhhhhccccCCc-ceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999955 89999999965 6789999999999996
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-21 Score=135.23 Aligned_cols=155 Identities=17% Similarity=0.320 Sum_probs=128.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEE--eecCCcccEEEEEEee-CCCEEEEecCCCeEEEEEcCCccccceeee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT--RSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 77 (203)
|+|+.+|..|++|+.|+++.+|++.....+. ...+|.+.|-.++|+| +...|++++.|.+|++||++. +++...+.
T Consensus 26 v~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~-~k~~~~i~ 104 (313)
T KOG1407|consen 26 VAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS-GKCTARIE 104 (313)
T ss_pred EEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEecc-CcEEEEee
Confidence 5799999999999999999999998775443 3457888899999987 567899999999999999985 56777776
Q ss_pred cCCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCc-----------------------------------------eee
Q 028802 78 GLSPNSVDALLKLDEDRVITGSENGLISLVGILPNR-----------------------------------------IIQ 116 (203)
Q Consensus 78 ~~~~~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~~~-----------------------------------------~~~ 116 (203)
. ..+.+...|+|+|.++++++.|..|.+.|.++.+ ++.
T Consensus 105 ~-~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~ 183 (313)
T KOG1407|consen 105 T-KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQ 183 (313)
T ss_pred c-cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecccccccc
Confidence 6 6777777799999999999998888888775422 334
Q ss_pred eeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 117 PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 117 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.+.+|+. .+.||.|+|+|+++|+|+.|..+.+||+....+.
T Consensus 184 si~AH~s-nCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~ 224 (313)
T KOG1407|consen 184 SIKAHPS-NCICIEFDPDGRYFATGSADALVSLWDVDELICE 224 (313)
T ss_pred ccccCCc-ceEEEEECCCCceEeeccccceeeccChhHhhhh
Confidence 4556754 7889999999999999999999999999877654
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5e-21 Score=147.62 Aligned_cols=151 Identities=13% Similarity=0.167 Sum_probs=132.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEee-CCCEEEEec--CCCeEEEEEcCCccccceeee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGS--QSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~ 77 (203)
|.|+++++++|+|+.|+.+.|||.....+...+..|...|..++|+| ....|++|+ .|+.|++|++.+ +..+..+.
T Consensus 307 Lkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~-g~~i~~vd 385 (484)
T KOG0305|consen 307 LKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT-GARIDSVD 385 (484)
T ss_pred eEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC-CcEecccc
Confidence 57999999999999999999999988888889999999999999999 557788765 499999999975 56666665
Q ss_pred cCCCCceeEE-EeeCCCEEEEEc--CCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 78 GLSPNSVDAL-LKLDEDRVITGS--ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~--~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
. ...|..+ |++..+.|+++. .+..|.||...+.+.+..+.+|.. +|..++++|||..+++++.|.+|++|++-.
T Consensus 386 t--gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~-RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 386 T--GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS-RVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred c--CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc-eeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 4 6788888 999988777654 467899999999999999999966 899999999999999999999999999976
Q ss_pred c
Q 028802 155 I 155 (203)
Q Consensus 155 ~ 155 (203)
.
T Consensus 463 ~ 463 (484)
T KOG0305|consen 463 E 463 (484)
T ss_pred C
Confidence 5
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.2e-21 Score=142.26 Aligned_cols=154 Identities=21% Similarity=0.256 Sum_probs=128.7
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCC--------ccccc
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY--------FKDCS 73 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~--------~~~~~ 73 (203)
+-+|+|.+|+.|+..|.|++|.+.+|.++..+..|...|+++.|+-|+.+|++|+.||.|.+|++.. ...++
T Consensus 88 ~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~ 167 (476)
T KOG0646|consen 88 ASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPL 167 (476)
T ss_pred ecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccce
Confidence 4578999999998999999999999999999999999999999999999999999999999998732 23556
Q ss_pred eeeecCCCCceeEE-E--eeCCCEEEEEcCCCcEEEEEccCCceeee---------------------------------
Q 028802 74 DRFVGLSPNSVDAL-L--KLDEDRVITGSENGLISLVGILPNRIIQP--------------------------------- 117 (203)
Q Consensus 74 ~~~~~~~~~~v~~~-~--~~~~~~l~~~~~dg~v~v~d~~~~~~~~~--------------------------------- 117 (203)
..+.. |.-+|+.+ . .+...++++++.|.++++||+..+..+.+
T Consensus 168 ~~f~~-HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~ 246 (476)
T KOG0646|consen 168 HIFSD-HTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLL 246 (476)
T ss_pred eeecc-CcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeeh
Confidence 67778 88889888 4 33557899999999999999865543322
Q ss_pred ------------------------eccCCC-cceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 118 ------------------------IAEHSE-YPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 118 ------------------------~~~~~~-~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+.+|.+ .+|+|++++-||..|++|+.||.++|||+.+.+
T Consensus 247 ~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 247 FKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred hcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 223432 389999999999999999999999999976654
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-21 Score=156.30 Aligned_cols=152 Identities=15% Similarity=0.249 Sum_probs=133.9
Q ss_pred CcccccCCEEEEEc--CCCeEEEEEcCC------------CeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEc
Q 028802 1 MTFAADAMKLLGTS--GDGTLSVCNLRK------------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSW 66 (203)
Q Consensus 1 l~~sp~~~~l~~~~--~d~~i~v~d~~~------------~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~ 66 (203)
+..+|+|..+++|+ .|+.++||+... .+.+..+..|.+.|.|+.|+|||++|++|+.|+.|.+|..
T Consensus 19 Idv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~ 98 (942)
T KOG0973|consen 19 IDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWER 98 (942)
T ss_pred EEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeee
Confidence 35789999999999 899999999752 2345566789999999999999999999999999999988
Q ss_pred CC------cc-----------ccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEE
Q 028802 67 GY------FK-----------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIES 128 (203)
Q Consensus 67 ~~------~~-----------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~ 128 (203)
.. .+ +.+..+.+ |.+.|..+ |+|++.++++++.|++|.+|+..+.+.+..+.+|.. .|..
T Consensus 99 ~~~~~~~~fgs~g~~~~vE~wk~~~~l~~-H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s-~VKG 176 (942)
T KOG0973|consen 99 AEIGSGTVFGSTGGAKNVESWKVVSILRG-HDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQS-LVKG 176 (942)
T ss_pred cccCCcccccccccccccceeeEEEEEec-CCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccc-cccc
Confidence 62 11 24556788 99999999 999999999999999999999999999999999965 8999
Q ss_pred EEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 129 LALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 129 ~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
+.|.|-|+|||+-+.|++|+||.+..
T Consensus 177 vs~DP~Gky~ASqsdDrtikvwrt~d 202 (942)
T KOG0973|consen 177 VSWDPIGKYFASQSDDRTLKVWRTSD 202 (942)
T ss_pred eEECCccCeeeeecCCceEEEEEccc
Confidence 99999999999999999999999765
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.5e-21 Score=152.01 Aligned_cols=159 Identities=13% Similarity=0.172 Sum_probs=136.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCc-------c---
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF-------K--- 70 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~-------~--- 70 (203)
+.|++.-..|++++.|.+|+||+.++.+++..+++|.-.|.|..|+|....+++++-|.+|+|||+... +
T Consensus 99 ~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e 178 (1202)
T KOG0292|consen 99 VFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLE 178 (1202)
T ss_pred eeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCch
Confidence 357888889999999999999999999999999999999999999999999999999999999999521 0
Q ss_pred ------------------ccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc--eeeeeccCCCcceEEE
Q 028802 71 ------------------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR--IIQPIAEHSEYPIESL 129 (203)
Q Consensus 71 ------------------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~--~~~~~~~~~~~~i~~~ 129 (203)
.....+.+ |...|.-+ |+|.-.+|++|+.|+.|++|.....+ .+-++++|.. .|+++
T Consensus 179 ~~~~~~~~~~dLfg~~DaVVK~VLEG-HDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~n-nVssv 256 (1202)
T KOG0292|consen 179 DQMRGQQGNSDLFGQTDAVVKHVLEG-HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYN-NVSSV 256 (1202)
T ss_pred hhhhccccchhhcCCcCeeeeeeecc-cccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccC-CcceE
Confidence 01123456 77777767 99999999999999999999987544 4567889965 89999
Q ss_pred EEeCCCCeEEEEeCCCcEEEEeCCCcccCCCC
Q 028802 130 ALSHDRKFLGSISHDSMLKLWDLDDILKGSGN 161 (203)
Q Consensus 130 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 161 (203)
.|+|....+++.+.|+.|+|||+.....-+.+
T Consensus 257 lfhp~q~lIlSnsEDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 257 LFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred EecCccceeEecCCCccEEEEecccccceeee
Confidence 99999999999999999999999877655544
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-20 Score=134.46 Aligned_cols=151 Identities=12% Similarity=0.150 Sum_probs=124.3
Q ss_pred Cccccc-CCEEEEEcCCCeEEEEEcCC-CeEE-EeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee
Q 028802 1 MTFAAD-AMKLLGTSGDGTLSVCNLRK-NTVQ-TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~-~~~l~~~~~d~~i~v~d~~~-~~~~-~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 77 (203)
|+|||. ..++++++.|++||+|+++. |... .....|.++|.+++|+.+|..+++|+.|+.+++||+... +...+.
T Consensus 33 l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~--Q~~~v~ 110 (347)
T KOG0647|consen 33 LAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG--QVSQVA 110 (347)
T ss_pred eEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC--Ceeeee
Confidence 589994 55667899999999999986 3333 334568899999999999999999999999999999853 556677
Q ss_pred cCCCCceeEE-EeeC--CCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 78 GLSPNSVDAL-LKLD--EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~--~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
. |..+|.++ |-+. ...|++|+.|.+|+.||++...++.++... + +++++.. -...++++..++.|.+|++++
T Consensus 111 ~-Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-e-RvYa~Dv--~~pm~vVata~r~i~vynL~n 185 (347)
T KOG0647|consen 111 A-HDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-E-RVYAADV--LYPMAVVATAERHIAVYNLEN 185 (347)
T ss_pred e-cccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-c-eeeehhc--cCceeEEEecCCcEEEEEcCC
Confidence 7 99999999 7443 458999999999999999999999888877 4 6776554 445788888999999999987
Q ss_pred cccC
Q 028802 155 ILKG 158 (203)
Q Consensus 155 ~~~~ 158 (203)
+..+
T Consensus 186 ~~te 189 (347)
T KOG0647|consen 186 PPTE 189 (347)
T ss_pred Ccch
Confidence 7544
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-21 Score=141.20 Aligned_cols=144 Identities=22% Similarity=0.344 Sum_probs=126.6
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCcee
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~ 85 (203)
+.+++++++.|.+|++|++.++..+.++.+|...|.|+.+ .++++++|+.|.+|++||+. .+.++..+.+ |..-|.
T Consensus 329 d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~-~G~cLRvLeG-HEeLvR 404 (499)
T KOG0281|consen 329 DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIE-CGACLRVLEG-HEELVR 404 (499)
T ss_pred ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecc-ccHHHHHHhc-hHHhhh
Confidence 5679999999999999999999999999999999999887 57899999999999999997 5799999999 999999
Q ss_pred EE-EeeCCCEEEEEcCCCcEEEEEccCCc---------eeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 86 AL-LKLDEDRVITGSENGLISLVGILPNR---------IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 86 ~~-~~~~~~~l~~~~~dg~v~v~d~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
|+ | +.+.|++|..||+|++||+..+. ++.++..|++ .|..+.| |...+++++.|.+|.|||+..+
T Consensus 405 ciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsg-RVFrLQF--D~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 405 CIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSG-RVFRLQF--DEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred heee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccc-eeEEEee--cceEEEeccCCCeEEEEEcCCC
Confidence 99 7 56789999999999999997652 3455566755 7888888 6678999999999999999887
Q ss_pred ccC
Q 028802 156 LKG 158 (203)
Q Consensus 156 ~~~ 158 (203)
.+.
T Consensus 480 ~~~ 482 (499)
T KOG0281|consen 480 PPS 482 (499)
T ss_pred Ccc
Confidence 665
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=134.74 Aligned_cols=106 Identities=11% Similarity=0.201 Sum_probs=94.8
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCC--EEEEecCCCeEEEEEcCCccccceeeecCCCC
Q 028802 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR--KVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 82 (203)
-++.++|+|+.|.+|+|||++....+..+..|.+.|+++.|.+... .|++|+.||.|.+|++... .++..+.+ |.+
T Consensus 51 Vs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W-~~~~slK~-H~~ 128 (362)
T KOG0294|consen 51 VSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW-ELLKSLKA-HKG 128 (362)
T ss_pred ecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe-EEeeeecc-ccc
Confidence 3688999999999999999999888888889999999999998765 8999999999999999754 78888999 999
Q ss_pred ceeEE-EeeCCCEEEEEcCCCcEEEEEccCC
Q 028802 83 SVDAL-LKLDEDRVITGSENGLISLVGILPN 112 (203)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~ 112 (203)
.|+.+ .+|.+++.++.+.|+.+++||+-.|
T Consensus 129 ~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~G 159 (362)
T KOG0294|consen 129 QVTDLSIHPSGKLALSVGGDQVLRTWNLVRG 159 (362)
T ss_pred ccceeEecCCCceEEEEcCCceeeeehhhcC
Confidence 99999 8999999999999999999987543
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.1e-21 Score=148.28 Aligned_cols=156 Identities=19% Similarity=0.264 Sum_probs=133.4
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCC--eEEEeecCCcccEEEEEE-eeCCCEEEEecCCCeEEEEEcCCccc-cce----
Q 028802 3 FAADAMKLLGTSGDGTLSVCNLRKN--TVQTRSEFSEEELTSVVL-MKNGRKVVCGSQSGTVLLYSWGYFKD-CSD---- 74 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~v~d~~~~--~~~~~~~~~~~~i~~l~~-~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~---- 74 (203)
...+++.|++++.|-+|++|+...+ -+..++..|...|.|+++ .++...+++|+-|+.|.+||+..... .+.
T Consensus 81 L~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~ 160 (735)
T KOG0308|consen 81 LCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNN 160 (735)
T ss_pred hhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccc
Confidence 3457889999999999999999876 466788899999999999 77888999999999999999975321 111
Q ss_pred ----eee-cCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEE
Q 028802 75 ----RFV-GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLK 148 (203)
Q Consensus 75 ----~~~-~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 148 (203)
.+. + +...++++ .++.|..|++|+..+.|++||.++++.+..+++|++ .|..+..++||+.+++++.||+|+
T Consensus 161 ~t~~sl~sG-~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~~ls~sSDgtIr 238 (735)
T KOG0308|consen 161 VTVNSLGSG-PKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTRLLSASSDGTIR 238 (735)
T ss_pred cccccCCCC-CccceeeeecCCcceEEEecCcccceEEeccccccceeeeecccc-ceEEEEEcCCCCeEeecCCCceEE
Confidence 122 5 66778888 789999999999999999999999999999999987 899999999999999999999999
Q ss_pred EEeCCCcccCCC
Q 028802 149 LWDLDDILKGSG 160 (203)
Q Consensus 149 iwd~~~~~~~~~ 160 (203)
+||+....+...
T Consensus 239 lWdLgqQrCl~T 250 (735)
T KOG0308|consen 239 LWDLGQQRCLAT 250 (735)
T ss_pred eeeccccceeee
Confidence 999987766543
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.5e-21 Score=144.02 Aligned_cols=151 Identities=17% Similarity=0.253 Sum_probs=126.4
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCC-CEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
.|-.||++||+|...|.|+|||+.+...+..+..|..++..+.|+|++ ..|++|+.|+.+++||+.+. .....+.+ |
T Consensus 75 ~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a-~v~~~l~~-h 152 (487)
T KOG0310|consen 75 DFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA-YVQAELSG-H 152 (487)
T ss_pred EeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc-EEEEEecC-C
Confidence 577899999999999999999977666778889999999999999955 56778888999999999753 34447788 9
Q ss_pred CCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCC-ceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028802 81 PNSVDAL-LKLD-EDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 81 ~~~v~~~-~~~~-~~~l~~~~~dg~v~v~d~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
+..|+|. ++|. +..+++|+.||.|++||+++. ..+..+. | +.+|..+.+-|.|..|++++ ...++|||+-++.+
T Consensus 153 tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-h-g~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~q 229 (487)
T KOG0310|consen 153 TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-H-GCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQ 229 (487)
T ss_pred cceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-C-CCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCce
Confidence 9999999 8775 558889999999999999976 5555554 4 34899999999999999987 45899999986543
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-20 Score=134.03 Aligned_cols=155 Identities=16% Similarity=0.182 Sum_probs=128.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec--
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-- 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-- 78 (203)
+.||+.|.+||+|..+|.|.|||+.+-.....+.+|..+|.+++|+++|++|++++.|..+.+||+..+ .+++.+.-
T Consensus 29 ~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g-s~l~rirf~s 107 (405)
T KOG1273|consen 29 CQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG-SPLKRIRFDS 107 (405)
T ss_pred EEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCC-CceeEEEccC
Confidence 469999999999999999999999998888889999999999999999999999999999999999743 33333210
Q ss_pred ------CC---------------------------------C---Cc-eeEE-EeeCCCEEEEEcCCCcEEEEEccCCce
Q 028802 79 ------LS---------------------------------P---NS-VDAL-LKLDEDRVITGSENGLISLVGILPNRI 114 (203)
Q Consensus 79 ------~~---------------------------------~---~~-v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~ 114 (203)
.| . +. ..+. |++.|++|++|...|.+.+|+..+.++
T Consensus 108 pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~ 187 (405)
T KOG1273|consen 108 PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLEC 187 (405)
T ss_pred ccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchhee
Confidence 00 0 00 1112 567789999999999999999999988
Q ss_pred eeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 115 IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 115 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+..++-.....|.++.++..|++|+.-+.|+.|+.|++....
T Consensus 188 vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~ 229 (405)
T KOG1273|consen 188 VASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDID 229 (405)
T ss_pred eeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhc
Confidence 887766542479999999999999999999999999987543
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.3e-20 Score=136.81 Aligned_cols=148 Identities=19% Similarity=0.286 Sum_probs=129.6
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC--CcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF--SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
..+|.|.||++++.|++..+.|++++..+..... ..-.+++.+|+|||..|.+|..|+.+++||+.. +..+..|.+
T Consensus 310 s~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks-~~~~a~Fpg- 387 (506)
T KOG0289|consen 310 SLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS-QTNVAKFPG- 387 (506)
T ss_pred eeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC-ccccccCCC-
Confidence 4678999999999999999999999977665543 345689999999999999999999999999975 568889999
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028802 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 151 (203)
|.++|..+ |+-+|.++++++.|+.|++||++.-+...++.......+.++.|.+.|.+|+.++.+=.|++++
T Consensus 388 ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 388 HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred CCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 99999999 9999999999999999999999988877777766444799999999999999998776666665
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-21 Score=139.62 Aligned_cols=156 Identities=15% Similarity=0.277 Sum_probs=139.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeec-CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
+.||.|...||+|+.||.|+||.+.+|.+++.+. .|...|+++.|+.|+..+++++.|.++++.-+. .+++++.+.+
T Consensus 269 i~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK-SGK~LKEfrG- 346 (508)
T KOG0275|consen 269 ISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK-SGKCLKEFRG- 346 (508)
T ss_pred EeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccc-cchhHHHhcC-
Confidence 4689999999999999999999999999998886 899999999999999999999999999999987 5789999999
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC-CcceEEEEEeCCC-CeEEEEeCCCcEEEEeCCCcc
Q 028802 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS-EYPIESLALSHDR-KFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~ 156 (203)
|...|... |+++|..+++++.||+|++|+..+.+++.++.... +.+|.++..-|.. ..+++|....+|+|-++....
T Consensus 347 HsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQv 426 (508)
T KOG0275|consen 347 HSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQV 426 (508)
T ss_pred ccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceE
Confidence 99999988 99999999999999999999999999998886442 3478888888854 678888889999999876554
Q ss_pred cC
Q 028802 157 KG 158 (203)
Q Consensus 157 ~~ 158 (203)
.+
T Consensus 427 Vr 428 (508)
T KOG0275|consen 427 VR 428 (508)
T ss_pred Ee
Confidence 33
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.4e-20 Score=144.96 Aligned_cols=151 Identities=17% Similarity=0.264 Sum_probs=129.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEee---cCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCc--------
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRS---EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF-------- 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~---~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~-------- 69 (203)
++.++.|++.+.|...|+|-+|++++|-....+ ..|..+|++++...-++.+++++.+|.+++||+...
T Consensus 454 v~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l 533 (910)
T KOG1539|consen 454 VCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL 533 (910)
T ss_pred EEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc
Confidence 357888999999999999999999999887777 478999999999888889999999999999998642
Q ss_pred --------------------------------cccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceee
Q 028802 70 --------------------------------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQ 116 (203)
Q Consensus 70 --------------------------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~ 116 (203)
...++.|.+ |.+.++.+ |+|+|++|++++.|++|++||+.++.++-
T Consensus 534 ~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g-h~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID 612 (910)
T KOG1539|consen 534 GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWG-HGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLID 612 (910)
T ss_pred CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhc-cccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceee
Confidence 112223456 88999999 99999999999999999999999999998
Q ss_pred eeccCCCcceEEEEEeCCCCeEEEEeCC-CcEEEEeCCC
Q 028802 117 PIAEHSEYPIESLALSHDRKFLGSISHD-SMLKLWDLDD 154 (203)
Q Consensus 117 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~~i~iwd~~~ 154 (203)
.+... . ++.++.|+|+|.+||+...| .-|++|-=.+
T Consensus 613 ~~~vd-~-~~~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 613 GLLVD-S-PCTSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred eEecC-C-cceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 77665 3 78999999999999999977 6799996443
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-20 Score=136.17 Aligned_cols=148 Identities=16% Similarity=0.229 Sum_probs=128.0
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcc--ccceeeecC
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--DCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~ 79 (203)
.|++ ...+++++.|.+|++||+.++.....+.+ ...+.++..+|..++|++|+.|..+++||.++.. .....+.+
T Consensus 267 ~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~g- 343 (423)
T KOG0313|consen 267 VWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIG- 343 (423)
T ss_pred EEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeec-
Confidence 4666 66899999999999999999988888876 5679999999999999999999999999998643 34567888
Q ss_pred CCCceeEE-EeeCC-CEEEEEcCCCcEEEEEccCCc-eeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 80 SPNSVDAL-LKLDE-DRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 80 ~~~~v~~~-~~~~~-~~l~~~~~dg~v~v~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
|.+.|.++ |+|.. ..|++++.|+++++||+++.+ ++..+.+|.+ .|.++.|+ ++..|++|+.|.+|+|+.-..
T Consensus 344 H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~D-Kvl~vdW~-~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 344 HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHND-KVLSVDWN-EGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCc-eEEEEecc-CCceEEeccCcceEEEecccc
Confidence 99999999 99965 457789999999999999877 8999999966 89999997 446899999999999997643
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-20 Score=139.28 Aligned_cols=153 Identities=15% Similarity=0.142 Sum_probs=134.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
++.||||++|++|+.|..|.||+..+.+.+..+.+|.+.|.+++|-.....|++++.|+.+++|++.. ...+.++.+ |
T Consensus 208 ~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~-~s~vetlyG-H 285 (479)
T KOG0299|consen 208 LAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ-LSYVETLYG-H 285 (479)
T ss_pred EEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH-hHHHHHHhC-C
Confidence 47899999999999999999999999999999999999999999998889999999999999999974 567888999 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
...|..+ ....++.+.+|+.|+++++|.+.. .....+.++.. .+-|++|-.+ .++++|+.+|.|.+|++.+..+-
T Consensus 286 qd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~-sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkpl 361 (479)
T KOG0299|consen 286 QDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEG-SIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPL 361 (479)
T ss_pred ccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCC-CeeeEEEecc-cceeeccCCceEEEeeecccCce
Confidence 9999999 777778888888999999999943 44456777744 7889998755 68899999999999999877654
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.5e-19 Score=127.03 Aligned_cols=153 Identities=16% Similarity=0.244 Sum_probs=135.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC--CCeEEEEEcCCccccceeeec
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ--SGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~ 78 (203)
|.|+++|.+|++++.|.+|++||..++..+.++..+...+..+.|....+.++.++. |.+|+..++.. .+.++.|.+
T Consensus 20 l~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~d-NkylRYF~G 98 (311)
T KOG1446|consen 20 LDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD-NKYLRYFPG 98 (311)
T ss_pred EEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeec-CceEEEcCC
Confidence 578999999999999999999999999999999888888999999888888877776 88999999975 588999999
Q ss_pred CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028802 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
|...|..+ .+|-+..+++++.|++|++||++..++...+..... + .++|.|+|-++|++.....|++||++....
T Consensus 99 -H~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~-p--i~AfDp~GLifA~~~~~~~IkLyD~Rs~dk 174 (311)
T KOG1446|consen 99 -HKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR-P--IAAFDPEGLIFALANGSELIKLYDLRSFDK 174 (311)
T ss_pred -CCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC-c--ceeECCCCcEEEEecCCCeEEEEEecccCC
Confidence 99999999 899999999999999999999998888777765522 3 478999999999998888999999998754
Q ss_pred C
Q 028802 158 G 158 (203)
Q Consensus 158 ~ 158 (203)
+
T Consensus 175 g 175 (311)
T KOG1446|consen 175 G 175 (311)
T ss_pred C
Confidence 4
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-19 Score=144.82 Aligned_cols=154 Identities=11% Similarity=0.165 Sum_probs=129.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecC-
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL- 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~- 79 (203)
++|+.+|+++|.|+.|-.|++.++.+......+.+|.++|.++.|+|.+++|++.+.||.|++|++.. +.+...+.+.
T Consensus 102 ~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~-~~~~~tl~~v~ 180 (933)
T KOG1274|consen 102 LAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQD-GILSKTLTGVD 180 (933)
T ss_pred EEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEccc-chhhhhcccCC
Confidence 46888999999999999999999999888899999999999999999999999999999999999974 4444443320
Q ss_pred -----C-CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCc-ceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028802 80 -----S-PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY-PIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 80 -----~-~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~i~iwd 151 (203)
. ...+..+ |+|++..+++.+.++.|.+|+.........++..... .+..++|+|+|.|||+++.+|.|.|||
T Consensus 181 k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 181 KDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWN 260 (933)
T ss_pred ccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEe
Confidence 1 1223444 9999999999999999999999988888777654222 488899999999999999999999999
Q ss_pred CCCc
Q 028802 152 LDDI 155 (203)
Q Consensus 152 ~~~~ 155 (203)
+.+.
T Consensus 261 v~t~ 264 (933)
T KOG1274|consen 261 VDTH 264 (933)
T ss_pred cccc
Confidence 9853
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-20 Score=140.88 Aligned_cols=154 Identities=15% Similarity=0.269 Sum_probs=126.0
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCC---eEEEeecC--CcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccc-ee
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKN---TVQTRSEF--SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS-DR 75 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~---~~~~~~~~--~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~-~~ 75 (203)
+.|...+++++|+. |.|+|||+... .++..+.. ....|.++.+.|||+.|++|+.-.++.|||+......+ ..
T Consensus 426 tIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikae 504 (705)
T KOG0639|consen 426 TISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAE 504 (705)
T ss_pred EecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhh
Confidence 45666778888877 89999999753 23334432 34568899999999999999999999999997533222 23
Q ss_pred eecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
+.. .....+++ .+||.++.++++.||.|.|||+.....+..+.+|++ .+.||.++++|..|.+|+.|.+++.||+++
T Consensus 505 lts-sapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtD-GascIdis~dGtklWTGGlDntvRcWDlre 582 (705)
T KOG0639|consen 505 LTS-SAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD-GASCIDISKDGTKLWTGGLDNTVRCWDLRE 582 (705)
T ss_pred cCC-cchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCC-CceeEEecCCCceeecCCCccceeehhhhh
Confidence 443 34456667 799999999999999999999999999999999987 799999999999999999999999999999
Q ss_pred cccC
Q 028802 155 ILKG 158 (203)
Q Consensus 155 ~~~~ 158 (203)
+.+-
T Consensus 583 grql 586 (705)
T KOG0639|consen 583 GRQL 586 (705)
T ss_pred hhhh
Confidence 8754
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-19 Score=142.02 Aligned_cols=156 Identities=17% Similarity=0.208 Sum_probs=135.4
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccc----cc----
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD----CS---- 73 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~----~~---- 73 (203)
.|-|.+++++.|...|.+.+||+.....+.+++.|.+.|++++.+||+..+++++.|.+|++||+..... ..
T Consensus 419 ~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~ls 498 (888)
T KOG0306|consen 419 KFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLS 498 (888)
T ss_pred EecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeee
Confidence 4678889999999999999999998888888899999999999999999999999999999999853111 11
Q ss_pred ----eeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEE
Q 028802 74 ----DRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLK 148 (203)
Q Consensus 74 ----~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 148 (203)
.++. -...+.|+ ++|+|++++++-.|.+|+||-+.+-+....+.+|.- ||.||.++||+..++||+.|++|+
T Consensus 499 l~~~rtLe--l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkL-PV~smDIS~DSklivTgSADKnVK 575 (888)
T KOG0306|consen 499 LKHTRTLE--LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKL-PVLSMDISPDSKLIVTGSADKNVK 575 (888)
T ss_pred eccceEEe--ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeeccccc-ceeEEeccCCcCeEEeccCCCceE
Confidence 1122 35678899 999999999999999999999999999999999966 999999999999999999999999
Q ss_pred EEeCCCcccCCC
Q 028802 149 LWDLDDILKGSG 160 (203)
Q Consensus 149 iwd~~~~~~~~~ 160 (203)
||-+.=+.+...
T Consensus 576 iWGLdFGDCHKS 587 (888)
T KOG0306|consen 576 IWGLDFGDCHKS 587 (888)
T ss_pred Eeccccchhhhh
Confidence 998877665533
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-20 Score=136.27 Aligned_cols=156 Identities=13% Similarity=0.150 Sum_probs=130.3
Q ss_pred CcccccCC-EEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
+.|+|... .|++|+.|+.|.+||++++.++..+.. ...-+.|+|+|.+-.+++++.|..++.||++....++.....
T Consensus 193 vkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~d- 270 (433)
T KOG0268|consen 193 VKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKD- 270 (433)
T ss_pred EecCCCcchheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhcccchhhcc-
Confidence 35777654 677888999999999999877765543 345678999998888999999999999999988888888999
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
|...|..+ |+|.|+-|++|+.|.+|+||..+.+...-++....-..|.++.|+.|.+++++|+.|+.|++|.....+.-
T Consensus 271 hvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 271 HVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred cceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence 99999999 99999999999999999999998776554443222237999999999999999999999999987665543
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3e-19 Score=138.60 Aligned_cols=149 Identities=17% Similarity=0.184 Sum_probs=132.3
Q ss_pred cccCCEEEEEcCCCeEEEEEcCCCe--EEE--------eec-CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc
Q 028802 4 AADAMKLLGTSGDGTLSVCNLRKNT--VQT--------RSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC 72 (203)
Q Consensus 4 sp~~~~l~~~~~d~~i~v~d~~~~~--~~~--------~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 72 (203)
-++...+|+|+-|+.|++||+.++. .+. .+. ++...|++++.++.|..|++|+..+.+++||.++ +..
T Consensus 127 ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt-~~k 205 (735)
T KOG0308|consen 127 AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRT-CKK 205 (735)
T ss_pred ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEecccc-ccc
Confidence 4567789999999999999999762 222 223 6778999999999999999999999999999986 455
Q ss_pred ceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028802 73 SDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 151 (203)
+..+.+ |...|.++ .+++|+.+++++.||+|++||+...+++.++..|.+ .|+++..+|+=.++++|+.||.|..=|
T Consensus 206 imkLrG-HTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Td 283 (735)
T KOG0308|consen 206 IMKLRG-HTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTD 283 (735)
T ss_pred eeeeec-cccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC-ceEEEeeCCCcceEEecCCCCcEEecc
Confidence 667889 99999999 899999999999999999999999999999999977 699999999989999999999999999
Q ss_pred CCCc
Q 028802 152 LDDI 155 (203)
Q Consensus 152 ~~~~ 155 (203)
+++.
T Consensus 284 l~n~ 287 (735)
T KOG0308|consen 284 LRNP 287 (735)
T ss_pred cCCc
Confidence 9985
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.9e-19 Score=145.23 Aligned_cols=159 Identities=16% Similarity=0.153 Sum_probs=131.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcc----------
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK---------- 70 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~---------- 70 (203)
++|+|++.+|++++.|++|.+|+..+...+..+.+|.+.|-.+.|.|-|++|++-+.|++|++|.+...+
T Consensus 135 v~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~ 214 (942)
T KOG0973|consen 135 VNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFE 214 (942)
T ss_pred eccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchh
Confidence 5799999999999999999999999999999999999999999999999999999999999999964310
Q ss_pred -----------------------------------------ccceeeecCCCCceeEE-EeeC-----CC----------
Q 028802 71 -----------------------------------------DCSDRFVGLSPNSVDAL-LKLD-----ED---------- 93 (203)
Q Consensus 71 -----------------------------------------~~~~~~~~~~~~~v~~~-~~~~-----~~---------- 93 (203)
..-..|.+ |..++.++ |+|. ..
T Consensus 215 ~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvG-H~~p~evvrFnP~lfe~~~~ng~~~~~~~~ 293 (942)
T KOG0973|consen 215 ESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVG-HSAPVEVVRFNPKLFERNNKNGTSTQPNCY 293 (942)
T ss_pred hCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeec-CCCceEEEEeChHHhccccccCCccCCCcc
Confidence 00011346 77888888 8772 11
Q ss_pred --EEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028802 94 --RVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 94 --~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
.+++|+.|+.|.||.....+++..+..-....|..++|+|||..|+.++.||+|.++.+...+-+..
T Consensus 294 y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG~~ 362 (942)
T KOG0973|consen 294 YCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELGVA 362 (942)
T ss_pred eEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhCcc
Confidence 6788999999999998777776555433334899999999999999999999999999877665543
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.3e-19 Score=125.40 Aligned_cols=149 Identities=21% Similarity=0.305 Sum_probs=119.0
Q ss_pred cccCCEEEEEcCCCeEEEEEcCCCeEEEeec-------------------------------------------------
Q 028802 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSE------------------------------------------------- 34 (203)
Q Consensus 4 sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~------------------------------------------------- 34 (203)
+.+.++|++|+.|.++++||+.+|+.+..++
T Consensus 61 d~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~ 140 (327)
T KOG0643|consen 61 DWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPY 140 (327)
T ss_pred cCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCce
Confidence 3456778888888888888888776544332
Q ss_pred ----CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEc
Q 028802 35 ----FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGI 109 (203)
Q Consensus 35 ----~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~ 109 (203)
.+.+.++.+.|.|-+..|++|..+|.|..||+++..+.+..... |...|..+ ++|+..++++++.|.+.++||.
T Consensus 141 ~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~-h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~ 219 (327)
T KOG0643|consen 141 LKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEE-HSSKINDLQFSRDRTYFITGSKDTTAKLVDV 219 (327)
T ss_pred EEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhh-hccccccccccCCcceEEecccCccceeeec
Confidence 23455677888888999999999999999999976666666677 88899999 9999999999999999999998
Q ss_pred cCCceeeee-------------------------------------------------------ccCCCcceEEEEEeCC
Q 028802 110 LPNRIIQPI-------------------------------------------------------AEHSEYPIESLALSHD 134 (203)
Q Consensus 110 ~~~~~~~~~-------------------------------------------------------~~~~~~~i~~~~~~~~ 134 (203)
.+-..+.++ .+|-+ +|.+++|+|+
T Consensus 220 ~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFG-PINsvAfhPd 298 (327)
T KOG0643|consen 220 RTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFG-PINSVAFHPD 298 (327)
T ss_pred cceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccccc-CcceeEECCC
Confidence 765444332 13433 8999999999
Q ss_pred CCeEEEEeCCCcEEEEeCCC
Q 028802 135 RKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 135 ~~~l~~~~~d~~i~iwd~~~ 154 (203)
|+..++|+.||.|++.-++.
T Consensus 299 GksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 299 GKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred CcccccCCCCceEEEEEecc
Confidence 99999999999999986653
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-19 Score=136.12 Aligned_cols=156 Identities=13% Similarity=0.144 Sum_probs=126.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe--E-EEeecCCcc--cEEEEEEeeCCCEEEEecCCCeEEEEEcCCcccccee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--V-QTRSEFSEE--ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~--~-~~~~~~~~~--~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 75 (203)
++|+|+|+.||+|..||.|.+|+..... + ...-..|.. .|++|.|+++|++|++-+.|+++++||++...+++..
T Consensus 323 C~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~ 402 (641)
T KOG0772|consen 323 CAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNV 402 (641)
T ss_pred eecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhh
Confidence 4799999999999999999999975432 2 223345655 8999999999999999999999999999987777776
Q ss_pred eecCCCC---ceeEEEeeCCCEEEEEcC------CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCc
Q 028802 76 FVGLSPN---SVDALLKLDEDRVITGSE------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSM 146 (203)
Q Consensus 76 ~~~~~~~---~v~~~~~~~~~~l~~~~~------dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 146 (203)
..+ -.. ...|+|+|+.++|++|.. .|.+.+||..+...++.+.-. ...|..+.|+|.=+.|..++.||.
T Consensus 403 ~tg-L~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~-~aSvv~~~WhpkLNQi~~gsgdG~ 480 (641)
T KOG0772|consen 403 RTG-LPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS-TASVVRCLWHPKLNQIFAGSGDGT 480 (641)
T ss_pred hcC-CCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC-CceEEEEeecchhhheeeecCCCc
Confidence 655 222 234459999999999864 578999999998888888666 447889999999889999999999
Q ss_pred EEEEeCCCcccC
Q 028802 147 LKLWDLDDILKG 158 (203)
Q Consensus 147 i~iwd~~~~~~~ 158 (203)
++||-=.+..++
T Consensus 481 ~~vyYdp~~S~R 492 (641)
T KOG0772|consen 481 AHVYYDPNESIR 492 (641)
T ss_pred eEEEECcccccc
Confidence 999865555444
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-19 Score=134.26 Aligned_cols=158 Identities=16% Similarity=0.240 Sum_probs=127.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCc-----------
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----------- 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~----------- 69 (203)
+.|.++++++++++.|+.+++|++...+...++.+|...|+++.|......+++|+.|.+|+.||+...
T Consensus 225 ~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~ 304 (459)
T KOG0288|consen 225 IDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQ 304 (459)
T ss_pred eeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccccc
Confidence 467889999999999999999999999999999999999999998876666778888888888777531
Q ss_pred ---------------------------cccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccC
Q 028802 70 ---------------------------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEH 121 (203)
Q Consensus 70 ---------------------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~ 121 (203)
..+..... -.+.|+++ .++++..+++++.|.++.++|+++.....++.+.
T Consensus 305 cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~--~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~ 382 (459)
T KOG0288|consen 305 CNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVP--LGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAE 382 (459)
T ss_pred ccceEecceeeeecccccceEEEeccCCceeeEee--cCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecc
Confidence 01111111 13467888 7889999999999999999999998888777654
Q ss_pred C---CcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028802 122 S---EYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 122 ~---~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
. ....+.+.|+|++.|+++|+.||.|+||++.++.....
T Consensus 383 g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~ 424 (459)
T KOG0288|consen 383 GFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKV 424 (459)
T ss_pred ccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEE
Confidence 2 12477899999999999999999999999999876543
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.7e-18 Score=117.35 Aligned_cols=161 Identities=16% Similarity=0.200 Sum_probs=126.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC------C--------eEE-EeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEE
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRK------N--------TVQ-TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~------~--------~~~-~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d 65 (203)
++|+|.|.+.++|+...+++|..... + ..+ ..-+.|.+.|.|.+|+|.|.+|++|+.|..|++..
T Consensus 38 v~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~ 117 (350)
T KOG0641|consen 38 VAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLP 117 (350)
T ss_pred EEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEe
Confidence 57999999999999999998875431 1 111 22346789999999999999999999999999876
Q ss_pred cCCc---------------------------------------------------cccceeeecCCCCceeEEEeeCCCE
Q 028802 66 WGYF---------------------------------------------------KDCSDRFVGLSPNSVDALLKLDEDR 94 (203)
Q Consensus 66 ~~~~---------------------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~ 94 (203)
++.. +...+.+.+ |.+-|.++++-++-.
T Consensus 118 fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sg-htghilalyswn~~m 196 (350)
T KOG0641|consen 118 FNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSG-HTGHILALYSWNGAM 196 (350)
T ss_pred cccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecC-CcccEEEEEEecCcE
Confidence 5421 122233445 677777887778889
Q ss_pred EEEEcCCCcEEEEEccCCceeeeecc--C----CCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCCCC
Q 028802 95 VITGSENGLISLVGILPNRIIQPIAE--H----SEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNN 162 (203)
Q Consensus 95 l~~~~~dg~v~v~d~~~~~~~~~~~~--~----~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 162 (203)
+++|+.|.+|++||++-..++.++.. | ...+|.+++..|.|+.|++|-.|....+||++.+...+.+-
T Consensus 197 ~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~ 270 (350)
T KOG0641|consen 197 FASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH 270 (350)
T ss_pred EEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC
Confidence 99999999999999998777766531 1 11479999999999999999999999999999998776654
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.9e-19 Score=139.10 Aligned_cols=150 Identities=18% Similarity=0.205 Sum_probs=120.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEee-CCCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
|.||. .++|++++.|.+|++|.+....++..+. |..-|+|++|+| |.++|++|+-|+.++||++.. ..+.....
T Consensus 375 lSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d--~~Vv~W~D- 449 (712)
T KOG0283|consen 375 LSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISD--KKVVDWND- 449 (712)
T ss_pred ccccc-CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCc--CeeEeehh-
Confidence 46775 4589999999999999999999988775 789999999999 889999999999999999963 33333443
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeec--cC------CCcceEEEEEeCCC-CeEEEEeCCCcEEE
Q 028802 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA--EH------SEYPIESLALSHDR-KFLGSISHDSMLKL 149 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~--~~------~~~~i~~~~~~~~~-~~l~~~~~d~~i~i 149 (203)
-..-|+++ |.|+|++.+.|+.+|.+++|+....+....+. .+ .. .|+.+.|.|.. ..+++.+.|..|+|
T Consensus 450 l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI 528 (712)
T KOG0283|consen 450 LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRI 528 (712)
T ss_pred hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEE
Confidence 35678888 99999999999999999999988665543332 11 12 69999999854 45777788999999
Q ss_pred EeCCCcc
Q 028802 150 WDLDDIL 156 (203)
Q Consensus 150 wd~~~~~ 156 (203)
||.+...
T Consensus 529 ~d~~~~~ 535 (712)
T KOG0283|consen 529 YDGRDKD 535 (712)
T ss_pred Eeccchh
Confidence 9995443
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-18 Score=136.75 Aligned_cols=148 Identities=20% Similarity=0.261 Sum_probs=131.7
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEe-ecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCcee
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNTVQTR-SEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~ 85 (203)
..++++++.+.+|++|+..++..+.. +.+|.+.|+++++..-+.+|++|+.|.++++||.. .+.+...+.+ |...+.
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~-sg~C~~~l~g-h~stv~ 295 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCS-TGECTHSLQG-HTSSVR 295 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecC-CCcEEEEecC-CCceEE
Confidence 56788999999999999999988877 99999999999998778899999999999999986 4789999999 999888
Q ss_pred EEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028802 86 ALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 86 ~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
++ +-...++++|+.|.+|++|++.++..+.++.+|.. +|.++.++ +.++++|+.|+.|++|++.++..-..
T Consensus 296 ~~-~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~-~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~s 366 (537)
T KOG0274|consen 296 CL-TIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTG-PVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKS 366 (537)
T ss_pred EE-EccCceEeeccCCceEEEEeccCcceEEEeccccc-cEEEEEec--CCEEEEEecCceEEEEEhhhceeeee
Confidence 87 34556788899999999999999999999999865 89999987 88999999999999999998765433
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-18 Score=128.48 Aligned_cols=155 Identities=16% Similarity=0.262 Sum_probs=126.3
Q ss_pred ccccc-CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeC-CCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 2 TFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
+|+-. .+.||+|+.|.+|++||+.++++..++..|...|.++.|+|. ...|++|+.|+++.++|.+.....-..+.
T Consensus 250 s~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-- 327 (463)
T KOG0270|consen 250 SWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-- 327 (463)
T ss_pred HhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE--
Confidence 34433 357899999999999999999999999999999999999994 57899999999999999985333333333
Q ss_pred CCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccC-CceeeeeccCCCcceEEEEEeCCC-CeEEEEeCCCcEEEEeCCCc
Q 028802 80 SPNSVDAL-LKLD-EDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 80 ~~~~v~~~-~~~~-~~~l~~~~~dg~v~v~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~ 155 (203)
..+.|-.+ |.|. ...++++..||.|+-+|+|. ++++.++.+|.+ +|.++++++.- .++++++.|+.+++|++..-
T Consensus 328 ~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 328 FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDVD 406 (463)
T ss_pred eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcceeeccccceEEEEeecCC
Confidence 35567777 8664 45667778899999999986 589999999965 89999998865 56789999999999999776
Q ss_pred ccCC
Q 028802 156 LKGS 159 (203)
Q Consensus 156 ~~~~ 159 (203)
.+..
T Consensus 407 ~~~~ 410 (463)
T KOG0270|consen 407 SPKS 410 (463)
T ss_pred CCcc
Confidence 6643
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.2e-20 Score=142.88 Aligned_cols=153 Identities=18% Similarity=0.244 Sum_probs=138.9
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeE
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~ 86 (203)
++.+++|+.|..+-+|.+.....+..+.+|..+|.++.|++...+|+.|+.+|+|++||+.. ...++++.+ |..++..
T Consensus 40 ~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee-Ak~vrtLtg-h~~~~~s 117 (825)
T KOG0267|consen 40 SRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE-AKIVRTLTG-HLLNITS 117 (825)
T ss_pred ceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh-hhhhhhhhc-cccCcce
Confidence 46788899999999999988777788999999999999999999999999999999999974 577889999 9999999
Q ss_pred E-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCCCC
Q 028802 87 L-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNN 162 (203)
Q Consensus 87 ~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 162 (203)
+ |+|-+.+.+.++.|+.+.+||++...+...+.+|.. .+..+.|+|+|++++.++.|..++|||+..+..-..++
T Consensus 118 v~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~-vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~ 193 (825)
T KOG0267|consen 118 VDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR-VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFK 193 (825)
T ss_pred eeeccceEEeccccccccceehhhhccCceeeecCCcc-eeEEEeecCCCceeeccCCcceeeeecccccccccccc
Confidence 9 999999999999999999999998788889999865 78899999999999999999999999998877665555
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-18 Score=123.65 Aligned_cols=146 Identities=15% Similarity=0.253 Sum_probs=116.3
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCe------EE----E-----eecCCcccEEEEEEee-CCCEEEEecCCCeEEEEEcCCc
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNT------VQ----T-----RSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYF 69 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~------~~----~-----~~~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d~~~~ 69 (203)
.|+++++|+.||.|.|||++.-. ++ . .-.+|...|.++.|-| |.-.+.+++.|.+++|||+.+.
T Consensus 55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTl 134 (397)
T KOG4283|consen 55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTL 134 (397)
T ss_pred cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccc
Confidence 57899999999999999997521 11 1 1135778899999999 6668888999999999999764
Q ss_pred cccceeeecCCCCceeEE-EeeC---CCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCe-EEEEeCC
Q 028802 70 KDCSDRFVGLSPNSVDAL-LKLD---EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF-LGSISHD 144 (203)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~-~~~~---~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d 144 (203)
+....|+ -++.|+.- ++|- ..+|++|..+-.|++.|+.+|....++.+|.+ .|.++.|+|...+ |++|+.|
T Consensus 135 -Q~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~-~vlaV~Wsp~~e~vLatgsaD 210 (397)
T KOG4283|consen 135 -QEAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD-GVLAVEWSPSSEWVLATGSAD 210 (397)
T ss_pred -eeeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC-ceEEEEeccCceeEEEecCCC
Confidence 3333444 35566655 6663 44777888888999999999999999999976 8999999998876 5789999
Q ss_pred CcEEEEeCCCc
Q 028802 145 SMLKLWDLDDI 155 (203)
Q Consensus 145 ~~i~iwd~~~~ 155 (203)
|.|++||++.-
T Consensus 211 g~irlWDiRra 221 (397)
T KOG4283|consen 211 GAIRLWDIRRA 221 (397)
T ss_pred ceEEEEEeecc
Confidence 99999999765
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-18 Score=125.48 Aligned_cols=156 Identities=14% Similarity=0.201 Sum_probs=117.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC-----eEE-Eeec-C--------------------------------------
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKN-----TVQ-TRSE-F-------------------------------------- 35 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~-----~~~-~~~~-~-------------------------------------- 35 (203)
|+||.||++|++++.|++|++|+++.- +.+ ..++ .
T Consensus 92 ~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~ 171 (420)
T KOG2096|consen 92 VAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGS 171 (420)
T ss_pred eEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCC
Confidence 689999999999999999999998641 000 0000 0
Q ss_pred --------------CcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcC
Q 028802 36 --------------SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSE 100 (203)
Q Consensus 36 --------------~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~ 100 (203)
|...+..+.....+.+|++++.|..|.+|++. ++.+..+.. .....+.. .+|+|+++++++-
T Consensus 172 ~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk--Gq~L~~idt-nq~~n~~aavSP~GRFia~~gF 248 (420)
T KOG2096|consen 172 HHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK--GQLLQSIDT-NQSSNYDAAVSPDGRFIAVSGF 248 (420)
T ss_pred cccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC--Cceeeeecc-ccccccceeeCCCCcEEEEecC
Confidence 12223334444446688999999999999997 677777776 55444444 7999999999998
Q ss_pred CCcEEEEEcc---CC-----ceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028802 101 NGLISLVGIL---PN-----RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 101 dg~v~v~d~~---~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
--.|+||.+- .| .....+.+|. ..|..++|+++.+.+++.+.||+++|||+.-.....+
T Consensus 249 TpDVkVwE~~f~kdG~fqev~rvf~LkGH~-saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~q 315 (420)
T KOG2096|consen 249 TPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ-SAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQ 315 (420)
T ss_pred CCCceEEEEEeccCcchhhhhhhheeccch-hheeeeeeCCCcceeEEEecCCcEEEeeccceEecCC
Confidence 8889999863 22 2346678884 4899999999999999999999999999876655443
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4e-18 Score=121.89 Aligned_cols=149 Identities=16% Similarity=0.228 Sum_probs=122.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
|.|+|.++.|++++.||++++|++....+...+ .|..++.+++|.+ ...+++|+.||.|+++|+.+. ....+-. |
T Consensus 19 v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~--~~~~igt-h 93 (323)
T KOG1036|consen 19 VKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG--NEDQIGT-H 93 (323)
T ss_pred EEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCC--cceeecc-C
Confidence 468888999999999999999999887655555 4688999999986 567899999999999999753 3344555 8
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
..++.|+ +.+....+++|+.|+.|++||.+.......+... . .|.++.. .|..|++|+.++.+.+||+++....
T Consensus 94 ~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-k-kVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~ 168 (323)
T KOG1036|consen 94 DEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG-K-KVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEP 168 (323)
T ss_pred CCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC-c-eEEEEec--cCCEEEEeecCceEEEEEcccccch
Confidence 9999999 8888899999999999999999875555555443 3 6877665 6778999999999999999998654
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.2e-18 Score=126.65 Aligned_cols=141 Identities=16% Similarity=0.250 Sum_probs=119.1
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC----CCc
Q 028802 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS----PNS 83 (203)
Q Consensus 8 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~----~~~ 83 (203)
..+++|..|++|++||+++..+...+..+. .|+++..++++..|.+++.|.++.+.|+++ ......+.. . ...
T Consensus 313 ~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt-~eI~~~~sA-~g~k~asD 389 (459)
T KOG0288|consen 313 SDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRT-KEIRQTFSA-EGFKCASD 389 (459)
T ss_pred eeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeeccc-ccEEEEeec-cccccccc
Confidence 346778889999999999998888888754 899999999999999999999999999986 355555443 1 122
Q ss_pred eeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCc-ceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028802 84 VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY-PIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~i~iwd 151 (203)
.+.+ |+|++.|+++|+.||.|+||++.++++...+...+.. .|++++|+|.|..|++++.++.+.+|.
T Consensus 390 wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 390 WTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred cceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 4444 9999999999999999999999999998888766442 699999999999999999999999993
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.2e-18 Score=127.03 Aligned_cols=155 Identities=11% Similarity=0.143 Sum_probs=129.5
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCC-------eEEEeecCCcccEEEEEEeeCC-CEEEEecCCCeEEEEEcCCccc
Q 028802 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKN-------TVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~v~d~~~~-------~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~d~~i~v~d~~~~~~ 71 (203)
++|+| +.+.||+|+.|.+|.||.+..+ +++..+.+|..+|-.++|+|.. +.|++++.|..|.+|++.+. .
T Consensus 87 i~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tg-e 165 (472)
T KOG0303|consen 87 IDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTG-E 165 (472)
T ss_pred cccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCC-c
Confidence 46888 4567899999999999999754 3466788999999999999954 67889999999999999874 4
Q ss_pred cceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe---CCCcE
Q 028802 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS---HDSML 147 (203)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d~~i 147 (203)
.+-.+. |...|+++ |+.+|.++++.+.|..|+|||.++++.+..-.+|.+..-..+.|-.+|..+.+|- .++.+
T Consensus 166 ali~l~--hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~ 243 (472)
T KOG0303|consen 166 ALITLD--HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQI 243 (472)
T ss_pred eeeecC--CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccce
Confidence 444444 89999999 9999999999999999999999999999888888776666778888988544443 57889
Q ss_pred EEEeCCCcccC
Q 028802 148 KLWDLDDILKG 158 (203)
Q Consensus 148 ~iwd~~~~~~~ 158 (203)
-+||..+.+..
T Consensus 244 aLwdp~nl~eP 254 (472)
T KOG0303|consen 244 ALWDPNNLEEP 254 (472)
T ss_pred eccCcccccCc
Confidence 99998877654
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.5e-18 Score=117.56 Aligned_cols=148 Identities=18% Similarity=0.195 Sum_probs=120.4
Q ss_pred cCCEEEEEcCCCeEEEEEcCCC---eEEEeecCCcccEEEEEEee--CCCEEEEecCCCeEEEEEcCCcc-ccceeeecC
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFK-DCSDRFVGL 79 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~i~~l~~~~--~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~ 79 (203)
-|++||+++.|++|+|+..+.+ +++.++.+|.+||+.++|.. .|.+|++++.||.|.||.-.+.. ........
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~- 100 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAA- 100 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhh-
Confidence 3789999999999999999853 56789999999999999975 78999999999999999875421 12334456
Q ss_pred CCCceeEE-Eee--CCCEEEEEcCCCcEEEEEccCC---ceeeeeccCCCcceEEEEEeCC---C-----------CeEE
Q 028802 80 SPNSVDAL-LKL--DEDRVITGSENGLISLVGILPN---RIIQPIAEHSEYPIESLALSHD---R-----------KFLG 139 (203)
Q Consensus 80 ~~~~v~~~-~~~--~~~~l~~~~~dg~v~v~d~~~~---~~~~~~~~~~~~~i~~~~~~~~---~-----------~~l~ 139 (203)
|...+.++ |-| -|-.|++++.||.|.|.+.+.. ........|.- .|.+++|.|- | +.|+
T Consensus 101 h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~-GvnsVswapa~~~g~~~~~~~~~~~krlv 179 (299)
T KOG1332|consen 101 HSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI-GVNSVSWAPASAPGSLVDQGPAAKVKRLV 179 (299)
T ss_pred hcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc-ccceeeecCcCCCccccccCcccccceee
Confidence 88899999 755 5778899999999999988753 22344567744 7999999985 4 5699
Q ss_pred EEeCCCcEEEEeCCCc
Q 028802 140 SISHDSMLKLWDLDDI 155 (203)
Q Consensus 140 ~~~~d~~i~iwd~~~~ 155 (203)
+|+.|..|+||+....
T Consensus 180 SgGcDn~VkiW~~~~~ 195 (299)
T KOG1332|consen 180 SGGCDNLVKIWKFDSD 195 (299)
T ss_pred ccCCccceeeeecCCc
Confidence 9999999999998874
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-18 Score=131.82 Aligned_cols=155 Identities=17% Similarity=0.171 Sum_probs=133.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
|+.|||.+..+++..||.|.|||+.+..+++.+++|...+.||.++++|..|.+|+-|++|+.||++.. ..+.... .
T Consensus 515 La~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlreg-rqlqqhd--F 591 (705)
T KOG0639|consen 515 LAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREG-RQLQQHD--F 591 (705)
T ss_pred hhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhh-hhhhhhh--h
Confidence 578999999999999999999999999999999999999999999999999999999999999999864 3333222 3
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
...|.++ ++|++.++++|-..+.+.|.... +.....+..| +..|.++.|.+-|+++++.+.|..+..|.+.-+...-
T Consensus 592 ~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlh-eScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiF 669 (705)
T KOG0639|consen 592 SSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLH-ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF 669 (705)
T ss_pred hhhheecccCCCccceeeecccCcEEEEecC-Cccceeeccc-ccEEEEEEecccCceeeecCchhhhhhccCcccccee
Confidence 4678888 89999999999999999888754 5555667777 4489999999999999999999999999987776554
Q ss_pred C
Q 028802 160 G 160 (203)
Q Consensus 160 ~ 160 (203)
+
T Consensus 670 q 670 (705)
T KOG0639|consen 670 Q 670 (705)
T ss_pred e
Confidence 3
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.8e-18 Score=134.95 Aligned_cols=102 Identities=19% Similarity=0.261 Sum_probs=85.9
Q ss_pred EEEEecCCCeEEEEEcCCccccceeeecC--CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceE
Q 028802 51 KVVCGSQSGTVLLYSWGYFKDCSDRFVGL--SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIE 127 (203)
Q Consensus 51 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~--~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~ 127 (203)
++++++.|..|+||++.. ++..+.|++. +.+..--+ ..|.|.++++.+.|.++.++|+.+|+++.++.+|.+ .|+
T Consensus 610 ~v~t~cQDrnirif~i~s-gKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE-~VT 687 (1080)
T KOG1408|consen 610 LVVTVCQDRNIRIFDIES-GKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSE-AVT 687 (1080)
T ss_pred eEEEEecccceEEEeccc-cceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcch-hee
Confidence 667777788888888864 5666777652 33344444 799999999999999999999999999999999976 899
Q ss_pred EEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 128 SLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 128 ~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
.+.|.+|.++|++.+.||.|.||.+..
T Consensus 688 G~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 688 GVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eeeecccchhheeecCCceEEEEECch
Confidence 999999999999999999999998653
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.4e-17 Score=114.49 Aligned_cols=148 Identities=18% Similarity=0.243 Sum_probs=105.9
Q ss_pred CcccccCCEEEEEcC----------CCeEEEEEcCC-CeEEEeecC-CcccEEEEEEeeCCCEEEEe--cCCCeEEEEEc
Q 028802 1 MTFAADAMKLLGTSG----------DGTLSVCNLRK-NTVQTRSEF-SEEELTSVVLMKNGRKVVCG--SQSGTVLLYSW 66 (203)
Q Consensus 1 l~~sp~~~~l~~~~~----------d~~i~v~d~~~-~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~--~~d~~i~v~d~ 66 (203)
|.|+|+|.+|+.-.. -+...+|-++. +.....+.. ..++|.+++|+|+|+.|++. ..+..+.+||+
T Consensus 11 ~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~ 90 (194)
T PF08662_consen 11 LHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDV 90 (194)
T ss_pred EEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcC
Confidence 469999998765432 13344555432 223333432 34579999999999987554 45679999999
Q ss_pred CCccccceeeecCCCCceeEE-EeeCCCEEEEEcC---CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe
Q 028802 67 GYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSE---NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~---dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 142 (203)
. ...+..+. ...+..+ |+|+|+++++++. .|.|.+||+++.+.+...... .++.++|+|+|++|+++.
T Consensus 91 ~--~~~i~~~~---~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~---~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 91 K--GKKIFSFG---TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS---DATDVEWSPDGRYLATAT 162 (194)
T ss_pred c--ccEeEeec---CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC---cEEEEEEcCCCCEEEEEE
Confidence 6 34444443 4456677 9999999999864 467999999988888766533 478999999999999877
Q ss_pred C------CCcEEEEeCCCcc
Q 028802 143 H------DSMLKLWDLDDIL 156 (203)
Q Consensus 143 ~------d~~i~iwd~~~~~ 156 (203)
. |..++||+.....
T Consensus 163 t~~r~~~dng~~Iw~~~G~~ 182 (194)
T PF08662_consen 163 TSPRLRVDNGFKIWSFQGRL 182 (194)
T ss_pred eccceeccccEEEEEecCeE
Confidence 4 7889999986543
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.6e-18 Score=120.99 Aligned_cols=152 Identities=19% Similarity=0.267 Sum_probs=131.7
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCC
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 81 (203)
.|-..|+.+++++.|.+..+||++++.++..+.+|...++.++-+|..+++++++.|.+.++||++..-..+..|.+ |.
T Consensus 279 dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQG-Ht 357 (481)
T KOG0300|consen 279 DWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQG-HT 357 (481)
T ss_pred hhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecc-cc
Confidence 35667899999999999999999999999999999999999999999999999999999999999855556788999 99
Q ss_pred CceeEEEeeCCCEEEEEcCCCcEEEEEccCC-ceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 82 NSVDALLKLDEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 82 ~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
..|++.....+..+++|+.|.+|+|||++.. .++.+++.. .++..++.+..+..|+.--.++.|++||+....
T Consensus 358 dtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtd--S~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R 431 (481)
T KOG0300|consen 358 DTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTD--SPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR 431 (481)
T ss_pred cceeEEEEecCCceeecCCCceEEEeeeccccCcceeeecC--CccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence 9999993344567889999999999999864 577788765 378889998888888888888999999997643
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-18 Score=124.92 Aligned_cols=147 Identities=14% Similarity=0.185 Sum_probs=128.9
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEc------CCc------------
Q 028802 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSW------GYF------------ 69 (203)
Q Consensus 8 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~------~~~------------ 69 (203)
..+.+++.|.+.+||.++++.++..+.+|.+.|++++|++.+.++++++.|++..||.. ...
T Consensus 161 pi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~ 240 (481)
T KOG0300|consen 161 PICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEE 240 (481)
T ss_pred cceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhh
Confidence 46788899999999999999999999999999999999999999999999999999962 110
Q ss_pred ---------------------cccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceE
Q 028802 70 ---------------------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIE 127 (203)
Q Consensus 70 ---------------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~ 127 (203)
..++..+++ |...|.+. |-..|+.+++++.|++..+||++++..+..+.+|.. ..+
T Consensus 241 e~sDe~~~d~d~~~~sD~~tiRvPl~~ltg-H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~-ELt 318 (481)
T KOG0300|consen 241 EHSDEHNRDTDSSEKSDGHTIRVPLMRLTG-HRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDS-ELT 318 (481)
T ss_pred hcccccccccccccccCCceeeeeeeeeec-cccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcch-hcc
Confidence 123344667 78888888 888899999999999999999999999999999954 789
Q ss_pred EEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 128 SLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 128 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
.++-+|..+.+++.+.|.+.++||++...
T Consensus 319 HcstHptQrLVvTsSrDtTFRLWDFReaI 347 (481)
T KOG0300|consen 319 HCSTHPTQRLVVTSSRDTTFRLWDFREAI 347 (481)
T ss_pred ccccCCcceEEEEeccCceeEeccchhhc
Confidence 99999999999999999999999998543
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-17 Score=118.43 Aligned_cols=153 Identities=16% Similarity=0.173 Sum_probs=120.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCC--EEEEecCCCeEEEEEcCCccccceeee-
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR--KVVCGSQSGTVLLYSWGYFKDCSDRFV- 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~~- 77 (203)
++|+-+|..+++|+.|+.+++||+.+++. ..+..|..+|..+.|-+... .|++|+.|.+|+.||.+.. .++.++.
T Consensus 78 v~WsddgskVf~g~~Dk~~k~wDL~S~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~-~pv~t~~L 155 (347)
T KOG0647|consen 78 VCWSDDGSKVFSGGCDKQAKLWDLASGQV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS-NPVATLQL 155 (347)
T ss_pred EEEccCCceEEeeccCCceEEEEccCCCe-eeeeecccceeEEEEecCCCcceeEecccccceeecccCCC-Ceeeeeec
Confidence 47999999999999999999999999954 56778999999999988665 7999999999999999853 2222211
Q ss_pred ------------------------------------c---CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC--cee
Q 028802 78 ------------------------------------G---LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN--RII 115 (203)
Q Consensus 78 ------------------------------------~---~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~--~~~ 115 (203)
. .....++|+ +.++....+.|+.+|.+.+..+..+ +.-
T Consensus 156 PeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~n 235 (347)
T KOG0647|consen 156 PERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDN 235 (347)
T ss_pred cceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCc
Confidence 0 012346777 6777777899999999999888775 444
Q ss_pred eeeccCCC--------cceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 116 QPIAEHSE--------YPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 116 ~~~~~~~~--------~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
.+++.|.. .+|.+|+|+|.-..|++++.||++.+||-...
T Consensus 236 FtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 236 FTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred eeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh
Confidence 56666642 25788999999899999999999999996443
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6e-17 Score=111.95 Aligned_cols=148 Identities=19% Similarity=0.236 Sum_probs=125.9
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC-------CcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcccccee
Q 028802 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-------SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-------~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 75 (203)
++-++-++++|+.|.+|++||++-+.++.++.. ..+.|.+++..|.|++|++|-.|....+||++ .+.+++.
T Consensus 190 yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydir-g~r~iq~ 268 (350)
T KOG0641|consen 190 YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIR-GGRMIQR 268 (350)
T ss_pred EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEee-CCceeee
Confidence 345678899999999999999998877776642 23578999999999999999999999999998 4789999
Q ss_pred eecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC----ceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEE
Q 028802 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN----RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw 150 (203)
+.. |...|+++ |+|...++++++.|..|++-|+.-. -++.....|.+ .+..+.|+|..--+++.+.|++..+|
T Consensus 269 f~p-hsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkd-k~i~~rwh~~d~sfisssadkt~tlw 346 (350)
T KOG0641|consen 269 FHP-HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKD-KAIQCRWHPQDFSFISSSADKTATLW 346 (350)
T ss_pred eCC-CccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccC-ceEEEEecCccceeeeccCcceEEEe
Confidence 999 99999999 9999999999999999999998632 23444556755 66778999999888999999999999
Q ss_pred eCC
Q 028802 151 DLD 153 (203)
Q Consensus 151 d~~ 153 (203)
-+.
T Consensus 347 a~~ 349 (350)
T KOG0641|consen 347 ALN 349 (350)
T ss_pred ccC
Confidence 764
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-17 Score=118.23 Aligned_cols=155 Identities=14% Similarity=0.174 Sum_probs=121.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeE-EEeec-----CCcccEEEEEEee--CCCEEEEecCCCeEEEEEcCCcccc
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV-QTRSE-----FSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFKDC 72 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~-----~~~~~i~~l~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~ 72 (203)
+.|.|++..|++-. +..|.+|++..+.. ...+. .+....++-+|+| +++.+++.+ ++++..||+++....
T Consensus 129 vew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~ 206 (370)
T KOG1007|consen 129 VEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKN 206 (370)
T ss_pred EEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhh
Confidence 35899999998876 78999999987644 33332 2355678889999 677777654 789999999975554
Q ss_pred ceeeecCCCCceeEE-EeeCCC-EEEEEcCCCcEEEEEccC-CceeeeeccCCCcceEEEEEeCCC-CeEEEEeCCCcEE
Q 028802 73 SDRFVGLSPNSVDAL-LKLDED-RVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLK 148 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~~-~l~~~~~dg~v~v~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~ 148 (203)
...-.. |...+..+ |+|+-. +|++|+.||.|++||.+. ..+++.+.+|.. .|+++.|+|.- +.|++++.|..+.
T Consensus 207 ~sI~dA-Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsH-WvW~VRfn~~hdqLiLs~~SDs~V~ 284 (370)
T KOG1007|consen 207 NSIEDA-HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSH-WVWAVRFNPEHDQLILSGGSDSAVN 284 (370)
T ss_pred cchhhh-hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCce-EEEEEEecCccceEEEecCCCceeE
Confidence 444455 88899999 999755 566888899999999985 567888999966 89999999954 6778999999999
Q ss_pred EEeCCCcccCC
Q 028802 149 LWDLDDILKGS 159 (203)
Q Consensus 149 iwd~~~~~~~~ 159 (203)
+|-...-...+
T Consensus 285 Lsca~svSSE~ 295 (370)
T KOG1007|consen 285 LSCASSVSSEQ 295 (370)
T ss_pred EEecccccccc
Confidence 99887665444
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.9e-17 Score=125.40 Aligned_cols=155 Identities=14% Similarity=0.238 Sum_probs=126.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC-eEEEeecCC-cccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKN-TVQTRSEFS-EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~-~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
||||.+.+.||.+-.+|.|.+|++..+ -+...+.++ ...|.+++|.+ +..|++.+.+|.|..||+.+ .++...+..
T Consensus 31 lA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~-lk~~~~~d~ 108 (691)
T KOG2048|consen 31 LAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHT-LKQKYNIDS 108 (691)
T ss_pred EEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEeccc-CceeEEecC
Confidence 588999999999999999999999875 333445544 45799999994 55678888899999999986 466677777
Q ss_pred CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC-CcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS-EYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
..+.++++ .+|.+..++.||.||.+..++..++.......... .++|.+++|+|++..|++|+.||.|++||+.++.
T Consensus 109 -~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~ 187 (691)
T KOG2048|consen 109 -NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQ 187 (691)
T ss_pred -CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCc
Confidence 88999999 89999999999999988888887776654432221 2489999999999999999999999999998775
Q ss_pred cC
Q 028802 157 KG 158 (203)
Q Consensus 157 ~~ 158 (203)
.-
T Consensus 188 t~ 189 (691)
T KOG2048|consen 188 TL 189 (691)
T ss_pred eE
Confidence 43
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.7e-17 Score=119.98 Aligned_cols=147 Identities=9% Similarity=0.203 Sum_probs=113.7
Q ss_pred CcccccC-CEEEEEcCCCeEEEEEcCCCe--EEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCC--cccccee
Q 028802 1 MTFAADA-MKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY--FKDCSDR 75 (203)
Q Consensus 1 l~~sp~~-~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~--~~~~~~~ 75 (203)
|+|||.. ..+++|+-||+|+|||++.+. .....+.|.+-|+-|.|+....+|++|+.+|+++|||++. .+.++..
T Consensus 263 LqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~ 342 (440)
T KOG0302|consen 263 LQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVAT 342 (440)
T ss_pred hccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCccee
Confidence 5799975 478999999999999999872 2223378899999999999888999999999999999985 3467888
Q ss_pred eecCCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCC-------------------ceeeeeccCCCcceEEEEEeCC
Q 028802 76 FVGLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPN-------------------RIIQPIAEHSEYPIESLALSHD 134 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~-~~~l~~~~~dg~v~v~d~~~~-------------------~~~~~~~~~~~~~i~~~~~~~~ 134 (203)
|+- |..+|+++ |+|. ...|++++.|..|.+||+..- +.++...+. ..+..+.|++.
T Consensus 343 fk~-Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQ--ke~KevhWH~Q 419 (440)
T KOG0302|consen 343 FKY-HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQ--KEVKEVHWHRQ 419 (440)
T ss_pred EEe-ccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecch--hHhhhheeccC
Confidence 998 99999999 9985 567778889999999998521 122222232 25788999986
Q ss_pred C-CeEEEEeCCCcEEEEe
Q 028802 135 R-KFLGSISHDSMLKLWD 151 (203)
Q Consensus 135 ~-~~l~~~~~d~~i~iwd 151 (203)
- -+|++.+.|| +.||.
T Consensus 420 iPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 420 IPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred CCCeEEEecccc-eeEEE
Confidence 5 4677777776 44543
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7e-19 Score=122.84 Aligned_cols=148 Identities=15% Similarity=0.222 Sum_probs=129.2
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCcee
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~ 85 (203)
+..+-++++.|-+.+|||.-+|..+..++ |.--|..++|+.|.++|++|+.+..++|||++....+...+.+ |.+.|.
T Consensus 70 na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~g-htg~Ir 147 (334)
T KOG0278|consen 70 NATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISG-HTGGIR 147 (334)
T ss_pred hhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcC-CCCcce
Confidence 34456778889999999999998877775 6777999999999999999999999999999877778888999 999999
Q ss_pred EE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 86 AL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 86 ~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.+ |....+.|++++.++.|++||.+++..++.+... . +|+++.++++|++|.++ ..+.|.+||..+...-
T Consensus 148 ~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~-s-~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~l 218 (334)
T KOG0278|consen 148 TVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN-S-PVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLL 218 (334)
T ss_pred eEEEeccCceEEeeccCCceEEEEeccCcEEEEEecC-C-CCcceeeccCCCEEEEe-cCceeEEeccccccce
Confidence 99 8888899999999999999999999999998766 3 79999999999887655 4678999999887543
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-17 Score=129.55 Aligned_cols=138 Identities=20% Similarity=0.317 Sum_probs=121.1
Q ss_pred EEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEEE
Q 028802 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL 88 (203)
Q Consensus 9 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~ 88 (203)
.|++|+.|.++++|-.. ++...+.+|...|+.++.-|.+ .+++|+.|.+|++|.- +..+++|.+ |...|+.+.
T Consensus 114 ~~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~---~~~l~tf~g-HtD~VRgL~ 186 (745)
T KOG0301|consen 114 TLISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG---GTLLKTFSG-HTDCVRGLA 186 (745)
T ss_pred ceEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC---Cchhhhhcc-chhheeeeE
Confidence 38999999999999754 5666799999999999999877 8899999999999963 678899999 999999994
Q ss_pred eeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 89 KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 89 ~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
--+...++++++||.|++|++ +|..+..+.+|+. -|+++...+++..+++++.|++++||+....
T Consensus 187 vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~ 251 (745)
T KOG0301|consen 187 VLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKDEC 251 (745)
T ss_pred EecCCCeEeecCCceEEEEec-cCceeeeeeccce-EEEEEEecCCCCeEEEecCCceEEEeecCce
Confidence 445557889999999999998 7899999999965 7999998888899999999999999997643
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.5e-16 Score=115.29 Aligned_cols=147 Identities=16% Similarity=0.221 Sum_probs=121.0
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecC---CcccEEEEEEeeCCCEEEEec--CCCeEEEEEcCCccccceeeecCCC
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEF---SEEELTSVVLMKNGRKVVCGS--QSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---~~~~i~~l~~~~~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~ 81 (203)
-++|+++-. ..|+|||+.+.+++.++.. +...+..+.+++.+.+|+.-+ ..|.|.+||+.+ -..+..+.. |.
T Consensus 97 r~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n-l~~v~~I~a-H~ 173 (391)
T KOG2110|consen 97 RKRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN-LQPVNTINA-HK 173 (391)
T ss_pred cceEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc-ceeeeEEEe-cC
Confidence 456666655 4599999999999888754 344566666666667888643 368999999975 467788888 99
Q ss_pred CceeEE-EeeCCCEEEEEcCCCc-EEEEEccCCceeeeeccCCC-cceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 82 NSVDAL-LKLDEDRVITGSENGL-ISLVGILPNRIIQPIAEHSE-YPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~dg~-v~v~d~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+.+.++ |+++|.+|++++..|+ |+|+.+.+|+.+..++.... ..|.+++|+|++++|++.+..++|+||.+....
T Consensus 174 ~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 174 GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 999999 9999999999999987 88999999999999976543 368999999999999999999999999998765
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.9e-17 Score=116.16 Aligned_cols=152 Identities=20% Similarity=0.246 Sum_probs=122.9
Q ss_pred ccc-cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeC---CCEEEEecCCCeEEEEEcCCccccceeeec
Q 028802 3 FAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN---GRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 3 ~sp-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~---~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
|-| |..++.+++-|.+++|||..+.+....++- ++.|.+-+++|= ..++++|..+-.|++.|+. .+..-+.+.+
T Consensus 109 WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~-SGs~sH~LsG 186 (397)
T KOG4283|consen 109 WYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA-SGSFSHTLSG 186 (397)
T ss_pred EeeecCceeecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEecc-CCcceeeecc
Confidence 444 445777888999999999999887766654 577888888883 4577888889999999997 4788899999
Q ss_pred CCCCceeEE-EeeCCCE-EEEEcCCCcEEEEEccCC-ceeee--------------eccCCCcceEEEEEeCCCCeEEEE
Q 028802 79 LSPNSVDAL-LKLDEDR-VITGSENGLISLVGILPN-RIIQP--------------IAEHSEYPIESLALSHDRKFLGSI 141 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~-l~~~~~dg~v~v~d~~~~-~~~~~--------------~~~~~~~~i~~~~~~~~~~~l~~~ 141 (203)
|...|.++ |+|...+ |++|+.||.|++||++.. .+... -..|.+ .+..++|+.++.+++++
T Consensus 187 -Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~g-kvngla~tSd~~~l~~~ 264 (397)
T KOG4283|consen 187 -HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYG-KVNGLAWTSDARYLASC 264 (397)
T ss_pred -ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccc-eeeeeeecccchhhhhc
Confidence 99999999 9998776 557889999999999743 22222 234433 78999999999999999
Q ss_pred eCCCcEEEEeCCCcccC
Q 028802 142 SHDSMLKLWDLDDILKG 158 (203)
Q Consensus 142 ~~d~~i~iwd~~~~~~~ 158 (203)
+.|..+++|+..++...
T Consensus 265 gtd~r~r~wn~~~G~nt 281 (397)
T KOG4283|consen 265 GTDDRIRVWNMESGRNT 281 (397)
T ss_pred cCccceEEeecccCccc
Confidence 99999999999887654
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-17 Score=121.50 Aligned_cols=151 Identities=11% Similarity=0.115 Sum_probs=113.9
Q ss_pred cccC-CEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCc-------------
Q 028802 4 AADA-MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF------------- 69 (203)
Q Consensus 4 sp~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~------------- 69 (203)
+|.. ..+++|+.||.|++||+.+..+...+..|.+.|..|++.. ..+++++.|.+|+.|.+...
T Consensus 75 hp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~g 152 (433)
T KOG0268|consen 75 HPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLG 152 (433)
T ss_pred CcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeeccccccc
Confidence 3444 4689999999999999999999999999999999999876 67788888998998874310
Q ss_pred -------------c-----------ccceeeecCCCCceeEE-EeeCCC-EEEEEcCCCcEEEEEccCCceeeee-----
Q 028802 70 -------------K-----------DCSDRFVGLSPNSVDAL-LKLDED-RVITGSENGLISLVGILPNRIIQPI----- 118 (203)
Q Consensus 70 -------------~-----------~~~~~~~~~~~~~v~~~-~~~~~~-~l~~~~~dg~v~v~d~~~~~~~~~~----- 118 (203)
+ .++..+.. ....+.++ |+|-.. .|+++..|+.|.+||++++.++..+
T Consensus 153 Idh~~~~~~FaTcGe~i~IWD~~R~~Pv~smsw-G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mR 231 (433)
T KOG0268|consen 153 IDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSW-GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMR 231 (433)
T ss_pred cccccccccccccCceeeecccccCCccceeec-CCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeecc
Confidence 1 11122222 33446666 777554 4556668999999999877654332
Q ss_pred -------------------------------------ccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 119 -------------------------------------AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 119 -------------------------------------~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.+| ..+|.++.|+|.|+.+++|+.|.+|+||.++.+..+
T Consensus 232 TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dh-vsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SR 307 (433)
T KOG0268|consen 232 TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDH-VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSR 307 (433)
T ss_pred ccceecCccccceeeccccccceehhhhhhcccchhhccc-ceeEEEeccCCCcchhccccccceEEEeecCCCcch
Confidence 233 237999999999999999999999999999877655
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.3e-17 Score=115.70 Aligned_cols=145 Identities=16% Similarity=0.250 Sum_probs=122.6
Q ss_pred EEEEEcCCCeEEEEEcCCC------------eEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee
Q 028802 9 KLLGTSGDGTLSVCNLRKN------------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 9 ~l~~~~~d~~i~v~d~~~~------------~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 76 (203)
.|++|++...|.=+++... .++..+..|.+.|++++. ++.++++|+.|-+|+|||++. ...+..+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k-~~qlg~l 79 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRK-RKQLGIL 79 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccc-hhhhcce
Confidence 4778888888777766421 123455678999999987 589999999999999999985 4667777
Q ss_pred ecCCCCceeEE-EeeCCC--EEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 77 VGLSPNSVDAL-LKLDED--RVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~--~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
.. |.+.++++ |.+.-. .|++|+.||.|.+|+.....++..+.+|.. .|+.++.+|.++..++.+.|+.+++|++-
T Consensus 80 l~-HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~-~Vt~lsiHPS~KLALsVg~D~~lr~WNLV 157 (362)
T KOG0294|consen 80 LS-HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKG-QVTDLSIHPSGKLALSVGGDQVLRTWNLV 157 (362)
T ss_pred ec-cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccc-ccceeEecCCCceEEEEcCCceeeeehhh
Confidence 77 99999999 877654 899999999999999999999999999977 79999999999999999999999999998
Q ss_pred CcccC
Q 028802 154 DILKG 158 (203)
Q Consensus 154 ~~~~~ 158 (203)
++...
T Consensus 158 ~Gr~a 162 (362)
T KOG0294|consen 158 RGRVA 162 (362)
T ss_pred cCccc
Confidence 77543
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-17 Score=123.97 Aligned_cols=151 Identities=14% Similarity=0.295 Sum_probs=131.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEE----Ee-------------e-cCCcccEEEEEEeeCCCEEEEecCCCeEE
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ----TR-------------S-EFSEEELTSVVLMKNGRKVVCGSQSGTVL 62 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~----~~-------------~-~~~~~~i~~l~~~~~~~~l~~~~~d~~i~ 62 (203)
|+++|+.+++++++.+++|.-|++.++... .. - +.|...+.+++.++|+++|++|+.|..|.
T Consensus 148 vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~ 227 (479)
T KOG0299|consen 148 VALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQ 227 (479)
T ss_pred EEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEE
Confidence 578999999999999999999999876522 11 0 25677899999999999999999999999
Q ss_pred EEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEE
Q 028802 63 LYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSI 141 (203)
Q Consensus 63 v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 141 (203)
||+..+ ...++.+.+ |.+.|.++ |-.....+++++.|+.|++|++.....+.++.+|.. .|.++.-..-++.+.+|
T Consensus 228 Iw~~~t-~ehv~~~~g-hr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd-~v~~IdaL~reR~vtVG 304 (479)
T KOG0299|consen 228 IWDCDT-LEHVKVFKG-HRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQD-GVLGIDALSRERCVTVG 304 (479)
T ss_pred EecCcc-cchhhcccc-cccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcc-ceeeechhcccceEEec
Confidence 999985 678888999 99999999 766677899999999999999998888999999965 79888887788888888
Q ss_pred eCCCcEEEEeCCC
Q 028802 142 SHDSMLKLWDLDD 154 (203)
Q Consensus 142 ~~d~~i~iwd~~~ 154 (203)
+.|+++++|++..
T Consensus 305 grDrT~rlwKi~e 317 (479)
T KOG0299|consen 305 GRDRTVRLWKIPE 317 (479)
T ss_pred cccceeEEEeccc
Confidence 8999999999943
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-17 Score=129.85 Aligned_cols=153 Identities=13% Similarity=0.236 Sum_probs=123.9
Q ss_pred ccccCCEEEE--EcCCCeEEEEEcCCC-eE----EEeecCCcccEEEEEEee-CCCEEEEecCCCeEEEEEcCCcc----
Q 028802 3 FAADAMKLLG--TSGDGTLSVCNLRKN-TV----QTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFK---- 70 (203)
Q Consensus 3 ~sp~~~~l~~--~~~d~~i~v~d~~~~-~~----~~~~~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d~~~~~---- 70 (203)
|..+.+++|+ ++.-|.|-||++... ++ +-.+ .....|+.+.|.| |...|++++.||.|++|.+...+
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~ 665 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN 665 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCccccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc
Confidence 3444555554 344689999999753 22 1122 2356799999999 77899999999999999996533
Q ss_pred --ccceeeecCCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCc
Q 028802 71 --DCSDRFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSM 146 (203)
Q Consensus 71 --~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 146 (203)
.+...++. |...|+++ |+| -...|++++.|-+|.+||+.+++....+.+|++ .|..++|+|+|+.+++.+.||+
T Consensus 666 ~~tPe~~lt~-h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtd-qIf~~AWSpdGr~~AtVcKDg~ 743 (1012)
T KOG1445|consen 666 EMTPEKILTI-HGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTD-QIFGIAWSPDGRRIATVCKDGT 743 (1012)
T ss_pred cCCcceeeec-ccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcC-ceeEEEECCCCcceeeeecCce
Confidence 23455677 99999999 998 457888999999999999999999999999977 8999999999999999999999
Q ss_pred EEEEeCCCcccC
Q 028802 147 LKLWDLDDILKG 158 (203)
Q Consensus 147 i~iwd~~~~~~~ 158 (203)
|++|..++.++.
T Consensus 744 ~rVy~Prs~e~p 755 (1012)
T KOG1445|consen 744 LRVYEPRSREQP 755 (1012)
T ss_pred EEEeCCCCCCCc
Confidence 999999887654
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-17 Score=122.12 Aligned_cols=151 Identities=19% Similarity=0.197 Sum_probs=123.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcccccee-----
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR----- 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~----- 75 (203)
|+|+++|..|++++.||++|||+......+.....|...|.+|.|+|||.+|++.+.+ ..+||++... ..+..
T Consensus 150 vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g-~~~a~~t~~~ 227 (398)
T KOG0771|consen 150 VAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG-AALARKTPFS 227 (398)
T ss_pred EEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccC-chhhhcCCcc
Confidence 5799999999999999999999988777777777888999999999999999999999 8999999753 11100
Q ss_pred ---------------------ee--------------cCC-------------CCceeEE-EeeCCCEEEEEcCCCcEEE
Q 028802 76 ---------------------FV--------------GLS-------------PNSVDAL-LKLDEDRVITGSENGLISL 106 (203)
Q Consensus 76 ---------------------~~--------------~~~-------------~~~v~~~-~~~~~~~l~~~~~dg~v~v 106 (203)
+. .++ ...+.++ .+++|++++.|+.+|.|.+
T Consensus 228 k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai 307 (398)
T KOG0771|consen 228 KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAI 307 (398)
T ss_pred cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEE
Confidence 00 001 2357778 8999999999999999999
Q ss_pred EEccCCceeeee-ccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 107 VGILPNRIIQPI-AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 107 ~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
++..+-+.++.. +.| ..-|+.+.|+|+.+++++.+.+..+.|..+.-
T Consensus 308 ~~~~~lq~~~~vk~aH-~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 308 YDAKSLQRLQYVKEAH-LGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEeceeeeeEeehhhh-eeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999887776555 456 44899999999999999999898888887754
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.2e-16 Score=110.12 Aligned_cols=155 Identities=15% Similarity=0.230 Sum_probs=121.0
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCC---------C-eEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccc
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRK---------N-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD 71 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~---------~-~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 71 (203)
+|+|.+++|++|..+|.|.+..+.. + ..+...++|.++++.++|. ..+|++++ ||.|+-|..+...+
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~e 93 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEE 93 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhh
Confidence 6899999999999999999999863 2 2344557899999999998 34666665 59999998753211
Q ss_pred ------cceeeecC-----CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEE
Q 028802 72 ------CSDRFVGL-----SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLG 139 (203)
Q Consensus 72 ------~~~~~~~~-----~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 139 (203)
.++..... ....|.++ ..|..+-+++++.|+.++-||+++|+...++++|++ -|.+++.-.....++
T Consensus 94 s~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtD-YvH~vv~R~~~~qil 172 (325)
T KOG0649|consen 94 SLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTD-YVHSVVGRNANGQIL 172 (325)
T ss_pred hccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcc-eeeeeeecccCccee
Confidence 11111110 22357788 689988899999999999999999999999999987 689988855566789
Q ss_pred EEeCCCcEEEEeCCCcccCCC
Q 028802 140 SISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 140 ~~~~d~~i~iwd~~~~~~~~~ 160 (203)
+|+.||++++||+++.+.-+.
T Consensus 173 sG~EDGtvRvWd~kt~k~v~~ 193 (325)
T KOG0649|consen 173 SGAEDGTVRVWDTKTQKHVSM 193 (325)
T ss_pred ecCCCccEEEEeccccceeEE
Confidence 999999999999999876544
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.6e-17 Score=121.70 Aligned_cols=152 Identities=22% Similarity=0.297 Sum_probs=122.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCc-ccEEEEEEeeCCCEEEEecCCCeEEEEEcCC-----ccccce
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSE-EELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-----FKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~-----~~~~~~ 74 (203)
++|+.+++.|++++.+|.|++||++...++..+.... -.-++++.++++.+|++|+..|.|.|||... ..+++.
T Consensus 350 ~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik 429 (514)
T KOG2055|consen 350 FTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIK 429 (514)
T ss_pred EEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchh
Confidence 4689999999999999999999999998887775422 2335677789999999999999999999642 234556
Q ss_pred eeecCCCCceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeeeeccCCC--cceEEEEEeCCCCeEEEEeCCCcEEE
Q 028802 75 RFVGLSPNSVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQPIAEHSE--YPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~--dg~v~v~d~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~~i~i 149 (203)
.+.. -...|..+ |+|++.+|+.++. ...+++..+.+......+..... ..++||+|+|.+-++|.|...|.+.+
T Consensus 430 ~~dN-Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l 508 (514)
T KOG2055|consen 430 TVDN-LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHL 508 (514)
T ss_pred hhhh-hheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceee
Confidence 6665 66788999 9999999998886 56799998887665555543321 26899999999999999999999999
Q ss_pred EeCC
Q 028802 150 WDLD 153 (203)
Q Consensus 150 wd~~ 153 (203)
|.+.
T Consensus 509 ~kL~ 512 (514)
T KOG2055|consen 509 FKLH 512 (514)
T ss_pred Eeec
Confidence 9874
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-17 Score=129.95 Aligned_cols=154 Identities=15% Similarity=0.213 Sum_probs=123.7
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCC-------eEEEeecCCcccEEEEEEee-CCCEEEEecCCCeEEEEEcCCccc
Q 028802 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKN-------TVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~v~d~~~~-------~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d~~~~~~ 71 (203)
+.|+| |...||+++.||.|++|.+..+ .+...++.|...|+++.|+| -...|++++.|.+|++||+.+ ..
T Consensus 633 l~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~-~~ 711 (1012)
T KOG1445|consen 633 LHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN-AK 711 (1012)
T ss_pred cccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh-hh
Confidence 45777 6678999999999999998753 34567788999999999999 457889999999999999986 46
Q ss_pred cceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc-eeeeeccCCCcceEEEEEeCCCCeEEEEeCC----C
Q 028802 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLALSHDRKFLGSISHD----S 145 (203)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~ 145 (203)
....+.+ |...|..+ |+|+|+.+++.+.||+|+||..++++ .+..-.+.-+.+--.|.|..+|+++++.+.| +
T Consensus 712 ~~~~l~g-HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeR 790 (1012)
T KOG1445|consen 712 LYSRLVG-HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSER 790 (1012)
T ss_pred hhheecc-CcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchh
Confidence 6678899 99999999 99999999999999999999988764 3333333222233457899999999887754 4
Q ss_pred cEEEEeCCCcc
Q 028802 146 MLKLWDLDDIL 156 (203)
Q Consensus 146 ~i~iwd~~~~~ 156 (203)
.|.+||..+..
T Consensus 791 Qv~~Y~Aq~l~ 801 (1012)
T KOG1445|consen 791 QVQMYDAQTLD 801 (1012)
T ss_pred hhhhhhhhhcc
Confidence 68888876654
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.5e-17 Score=120.19 Aligned_cols=126 Identities=11% Similarity=0.134 Sum_probs=108.9
Q ss_pred eecCCcccEEEEEEee-CCCEEEEecCCCeEEEEEcCCcc------ccceeeecCCCCceeEE-EeeC-CCEEEEEcCCC
Q 028802 32 RSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFK------DCSDRFVGLSPNSVDAL-LKLD-EDRVITGSENG 102 (203)
Q Consensus 32 ~~~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d~~~~~------~~~~~~~~~~~~~v~~~-~~~~-~~~l~~~~~dg 102 (203)
.+.+|.++|..++|+| +.+.|++|+.|.+|.||.+...+ .++..+.+ |...|..+ |+|. .+.|++++.|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~g-H~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYG-HQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEee-cceeEEEEeecccchhhHhhccCCc
Confidence 4458999999999999 45778899999999999996432 44667888 99999999 9986 46788999999
Q ss_pred cEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028802 103 LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 103 ~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
.|.+|++.+|+.+.++. |.+ -|+++.|+.+|.+|++.+.|+.|+|||.+++..-+.
T Consensus 155 ~v~iWnv~tgeali~l~-hpd-~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e 210 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPD-MVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSE 210 (472)
T ss_pred eEEEEeccCCceeeecC-CCC-eEEEEEeccCCceeeeecccceeEEEcCCCCcEeee
Confidence 99999999999988887 766 799999999999999999999999999999876544
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-16 Score=115.29 Aligned_cols=146 Identities=14% Similarity=0.231 Sum_probs=113.5
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEee--CCCEEEEecCCCeEEEEEcCCccccce-eeecCCCC-c
Q 028802 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFKDCSD-RFVGLSPN-S 83 (203)
Q Consensus 8 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~-~ 83 (203)
..+|++-..|.|++||..+++.+..+.++...+..+.|.. ..+.+.+++.||+|++||++...+.-. .+.. +.+ +
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~-~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQ-QSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccC-CCCCc
Confidence 3578888889999999999999999999999999999987 567889999999999999997544332 2333 442 3
Q ss_pred eeEE-EeeCCCEEEEEcC----CCcEEEEEccCCce-eeee-ccCCCcceEEEEEeCCC-CeEEEEeCCCcEEEEeCCCc
Q 028802 84 VDAL-LKLDEDRVITGSE----NGLISLVGILPNRI-IQPI-AEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~----dg~v~v~d~~~~~~-~~~~-~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~ 155 (203)
..++ ..-.++.+++|.. +-.|.+||++..+. +..+ ..|.+ .|+++.|+|.. +.|++|+.||.+.+||+...
T Consensus 120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~D-DVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHND-DVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred ceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccC-cceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 3444 3446777777764 45699999997655 4443 56655 89999999965 68899999999999998755
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-15 Score=113.14 Aligned_cols=151 Identities=15% Similarity=0.129 Sum_probs=113.8
Q ss_pred CcccccCCEE-EEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEe-cCCCeEEEEEcCCccccceeeec
Q 028802 1 MTFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
++|+|+++.+ ++++.++.|++||+.+++.+..+..+.. +..++|+|+++.++++ ..++.+++||+.. ...+..+..
T Consensus 36 l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~-~~~~~~~~~ 113 (300)
T TIGR03866 36 ITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIET-RKVLAEIPV 113 (300)
T ss_pred eEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCC-CeEEeEeeC
Confidence 4789999876 5667889999999999887776665433 5678999999977655 4589999999975 344555543
Q ss_pred CCCCceeEE-EeeCCCEEEEEcCCC-cEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe-CCCcEEEEeCCCc
Q 028802 79 LSPNSVDAL-LKLDEDRVITGSENG-LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLDDI 155 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~dg-~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~ 155 (203)
...+..+ |+|++.+++++..++ .+.+||..+++.+..+... . .+.+++|+|++++|++++ .++.|++||+.++
T Consensus 114 --~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~-~-~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~ 189 (300)
T TIGR03866 114 --GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD-Q-RPRFAEFTADGKELWVSSEIGGTVSVIDVATR 189 (300)
T ss_pred --CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-C-CccEEEECCCCCEEEEEcCCCCEEEEEEcCcc
Confidence 2335667 899999999888765 4677898887766554333 2 457799999999886554 6899999999887
Q ss_pred cc
Q 028802 156 LK 157 (203)
Q Consensus 156 ~~ 157 (203)
..
T Consensus 190 ~~ 191 (300)
T TIGR03866 190 KV 191 (300)
T ss_pred ee
Confidence 54
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-16 Score=118.66 Aligned_cols=151 Identities=11% Similarity=0.073 Sum_probs=113.2
Q ss_pred CcccccC--CEEEEEcCCCeEEEEEcCCC----eEEEeecCCcccEEEEEEeeC-CCEEEEecCCCeEEEEEcCCc----
Q 028802 1 MTFAADA--MKLLGTSGDGTLSVCNLRKN----TVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYF---- 69 (203)
Q Consensus 1 l~~sp~~--~~l~~~~~d~~i~v~d~~~~----~~~~~~~~~~~~i~~l~~~~~-~~~l~~~~~d~~i~v~d~~~~---- 69 (203)
|+|+|-. +++|+|..-|+|-+||+.+. .-+..+..|..+|.+|.|+|. ...+++.+.||+|++-|+...
T Consensus 192 l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~ 271 (498)
T KOG4328|consen 192 LAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEE 271 (498)
T ss_pred EEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHH
Confidence 5788865 47889999999999999532 234566789999999999994 467888888998888777531
Q ss_pred ----------------------------------------cccceeeecCCCCceeEE-EeeC-CCEEEEEcCCCcEEEE
Q 028802 70 ----------------------------------------KDCSDRFVGLSPNSVDAL-LKLD-EDRVITGSENGLISLV 107 (203)
Q Consensus 70 ----------------------------------------~~~~~~~~~~~~~~v~~~-~~~~-~~~l~~~~~dg~v~v~ 107 (203)
+.....+.. |...|..+ ++|. ..+|++++.|++++||
T Consensus 272 v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~l-h~kKI~sv~~NP~~p~~laT~s~D~T~kIW 350 (498)
T KOG4328|consen 272 VLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRL-HKKKITSVALNPVCPWFLATASLDQTAKIW 350 (498)
T ss_pred HhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhh-hhcccceeecCCCCchheeecccCcceeee
Confidence 111111222 55578888 7885 4568899999999999
Q ss_pred EccCC--c--eeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 108 GILPN--R--IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 108 d~~~~--~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
|++.- + ++.....|.. .|.++.|+|.+-.|++.+.|..|+|||..
T Consensus 351 D~R~l~~K~sp~lst~~Hrr-sV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 351 DLRQLRGKASPFLSTLPHRR-SVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred ehhhhcCCCCcceecccccc-eeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 99852 2 2333445644 89999999988779999999999999984
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.3e-17 Score=112.69 Aligned_cols=146 Identities=15% Similarity=0.214 Sum_probs=118.7
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCe--EEEeecCCcccEEEEEEeeCC--CEEEEecCCCeEEEEEcCCcc-c-cceeeecC
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNG--RKVVCGSQSGTVLLYSWGYFK-D-CSDRFVGL 79 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~i~~l~~~~~~--~~l~~~~~d~~i~v~d~~~~~-~-~~~~~~~~ 79 (203)
-|.+||+++.||.|.||.-.+++ .......|...|++++|.|++ -.|++++.||.|.|.+.+..+ - .-.....
T Consensus 69 ~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~a- 147 (299)
T KOG1332|consen 69 FGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFA- 147 (299)
T ss_pred cCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhc-
Confidence 58899999999999999988773 334556889999999999964 678899999999999987642 1 2234455
Q ss_pred CCCceeEE-EeeC---C-----------CEEEEEcCCCcEEEEEccCCc--eeeeeccCCCcceEEEEEeCCC----CeE
Q 028802 80 SPNSVDAL-LKLD---E-----------DRVITGSENGLISLVGILPNR--IIQPIAEHSEYPIESLALSHDR----KFL 138 (203)
Q Consensus 80 ~~~~v~~~-~~~~---~-----------~~l~~~~~dg~v~v~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~----~~l 138 (203)
|.-.+.++ |.|. | +.|++|+.|..|+||...++. ....+.+|.+ .|+.++|.|.- .+|
T Consensus 148 H~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~d-wVRDVAwaP~~gl~~s~i 226 (299)
T KOG1332|consen 148 HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKD-WVRDVAWAPSVGLPKSTI 226 (299)
T ss_pred cccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcch-hhhhhhhccccCCCceee
Confidence 88888888 7664 4 569999999999999988763 3355889977 79999999953 579
Q ss_pred EEEeCCCcEEEEeCC
Q 028802 139 GSISHDSMLKLWDLD 153 (203)
Q Consensus 139 ~~~~~d~~i~iwd~~ 153 (203)
++++.||++.||-.+
T Consensus 227 AS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 227 ASCSQDGTVIIWTKD 241 (299)
T ss_pred EEecCCCcEEEEEec
Confidence 999999999999876
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.8e-16 Score=115.94 Aligned_cols=156 Identities=17% Similarity=0.260 Sum_probs=124.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC--CeEEEeecCCcccEEEEEEeeCCC-EEEEecCCCeEEEEEcCCcc-------
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRK--NTVQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFK------- 70 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~--~~~~~~~~~~~~~i~~l~~~~~~~-~l~~~~~d~~i~v~d~~~~~------- 70 (203)
|.|+|....|++++.|+++++|-+.. +..++.+.-...+|.+..|.|+|. .+++++....++.||+.+.+
T Consensus 219 v~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~ 298 (514)
T KOG2055|consen 219 VQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPP 298 (514)
T ss_pred EEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCC
Confidence 46999999999999999999998864 455666666678999999999998 88889999999999996421
Q ss_pred -----ccceeee-----------c-------------------CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCce
Q 028802 71 -----DCSDRFV-----------G-------------------LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI 114 (203)
Q Consensus 71 -----~~~~~~~-----------~-------------------~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~ 114 (203)
+.++.|. + -..+.+..+ |+.+++.|++++.+|.|++||++...+
T Consensus 299 ~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~ 378 (514)
T KOG2055|consen 299 YGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSC 378 (514)
T ss_pred CCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcce
Confidence 0111110 0 013456777 889999999999999999999999999
Q ss_pred eeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 115 IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 115 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+..+.......-++++.++++.|||+|+..|.|.|||..+..
T Consensus 379 ~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~ 420 (514)
T KOG2055|consen 379 LHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCF 420 (514)
T ss_pred EEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhh
Confidence 888876533244678888999999999999999999976654
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.5e-16 Score=121.90 Aligned_cols=140 Identities=13% Similarity=0.178 Sum_probs=120.3
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCce
Q 028802 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSV 84 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v 84 (203)
|++ .+++|+.|.+|++|.- ++.+.++.+|...|+.+++.+++ .|++++.||.|++|++. +.++....+ |..-+
T Consensus 150 ~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~--ge~l~~~~g-htn~v 222 (745)
T KOG0301|consen 150 PEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLD--GEVLLEMHG-HTNFV 222 (745)
T ss_pred CCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEecc--Cceeeeeec-cceEE
Confidence 444 7899999999999985 67889999999999999998765 57888999999999984 688888999 99999
Q ss_pred eEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 85 DAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 85 ~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
+++ ..+++..|+++++|+++++|+.. .+.+.+..++. .|+++.+-++|.. ++|+.||.|+||..+.-
T Consensus 223 Ysis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt-siWsa~~L~NgDI-vvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 223 YSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT-SIWSAKVLLNGDI-VVGGSDGRVRVFTVDKD 290 (745)
T ss_pred EEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc-ceEEEEEeeCCCE-EEeccCceEEEEEeccc
Confidence 999 68888999999999999999965 77777776654 7999999888754 67778999999987644
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-16 Score=111.89 Aligned_cols=151 Identities=17% Similarity=0.234 Sum_probs=121.3
Q ss_pred cccc--cCCEEEEEcCCCeEEEEEcCCCeEEEeec-CCcccEEEEEEeeCCC-EEEEecCCCeEEEEEcCCccccceeee
Q 028802 2 TFAA--DAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 2 ~~sp--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~i~~l~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~ 77 (203)
+||| +|+.+++. .|+++..||+++......+. .|...|..+.|+|+.+ +|++++.||.|++||++....++..+.
T Consensus 177 ~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~ 255 (370)
T KOG1007|consen 177 AWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP 255 (370)
T ss_pred ccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC
Confidence 5787 67777776 46999999999877666664 6888899999999775 578899999999999998888999999
Q ss_pred cCCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCC-----------------------------ceeeeeccCCCcce
Q 028802 78 GLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPN-----------------------------RIIQPIAEHSEYPI 126 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~-~~~l~~~~~dg~v~v~d~~~~-----------------------------~~~~~~~~~~~~~i 126 (203)
+ |...++++ |+|. ..+|++++.|..|.+|...+- ..+.++..|.+ .|
T Consensus 256 ~-HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED-SV 333 (370)
T KOG1007|consen 256 G-HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED-SV 333 (370)
T ss_pred C-CceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc-ce
Confidence 9 99999999 9884 567888999999999875321 12345566755 89
Q ss_pred EEEEEeCCCCe-EEEEeCCCcEEEEeCCCc
Q 028802 127 ESLALSHDRKF-LGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 127 ~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~ 155 (203)
++++|+.-..+ +|+.+.||.+.|=.+...
T Consensus 334 Y~~aWSsadPWiFASLSYDGRviIs~V~r~ 363 (370)
T KOG1007|consen 334 YALAWSSADPWIFASLSYDGRVIISSVPRF 363 (370)
T ss_pred EEEeeccCCCeeEEEeccCceEEeecCChh
Confidence 99999986665 678899999988766543
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.1e-16 Score=113.14 Aligned_cols=143 Identities=15% Similarity=0.198 Sum_probs=114.3
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCc--c-----ccceeee
Q 028802 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF--K-----DCSDRFV 77 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~--~-----~~~~~~~ 77 (203)
..+++|++++.|..|.+|++. |+.+..+.......+..+.+|+|+++++++..--+++|.+-.. + .-+..+.
T Consensus 197 ~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~Lk 275 (420)
T KOG2096|consen 197 GNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLK 275 (420)
T ss_pred CCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheec
Confidence 356899999999999999998 8888988887777888899999999999999999999987421 1 1234568
Q ss_pred cCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC-------------C---------cee-------------------
Q 028802 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP-------------N---------RII------------------- 115 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~-------------~---------~~~------------------- 115 (203)
+ |...|..+ |+++...+++.+.||.+++||+.- + .++
T Consensus 276 G-H~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l 354 (420)
T KOG2096|consen 276 G-HQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDL 354 (420)
T ss_pred c-chhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCce
Confidence 8 99999999 999999999999999999999731 1 000
Q ss_pred eee------------ccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028802 116 QPI------------AEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 116 ~~~------------~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 151 (203)
+.+ ..|. ..|.+++|+++|+++++++ |+.++++-
T Consensus 355 ~~~~se~g~~~~~~e~~h~-~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 355 KVFASEDGKDYPELEDIHS-TTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred EEEEcccCccchhHHHhhc-CceeeEEecCCCcEEeeec-ceeeeeec
Confidence 000 0132 3699999999999999987 77888875
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-15 Score=119.35 Aligned_cols=160 Identities=14% Similarity=0.165 Sum_probs=127.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
|+|+ ++..|++.+.+|.|.-||+.+++.+..+....+.|++++.+|.+..+++|+.||.++.++.....-.......+.
T Consensus 75 L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq 153 (691)
T KOG2048|consen 75 LAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQ 153 (691)
T ss_pred EEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccc
Confidence 4788 466788888999999999999999999998889999999999999999999999888887764322222222225
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeec-----cCC--CcceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA-----EHS--EYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~-----~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
.+.+.++ |+|++..|+.|+.||.|++||...+..+...+ ... ..-|+++.|-.+ ..|++|..-|+|.+||.
T Consensus 154 ~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~ 232 (691)
T KOG2048|consen 154 KSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDS 232 (691)
T ss_pred cceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcc
Confidence 6889999 99999999999999999999999887766322 111 124677777755 57889999999999999
Q ss_pred CCcccCCCCC
Q 028802 153 DDILKGSGNN 162 (203)
Q Consensus 153 ~~~~~~~~~~ 162 (203)
..+...+...
T Consensus 233 ~~gTLiqS~~ 242 (691)
T KOG2048|consen 233 IFGTLIQSHS 242 (691)
T ss_pred cCcchhhhhh
Confidence 8887766544
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.1e-16 Score=124.07 Aligned_cols=153 Identities=18% Similarity=0.297 Sum_probs=127.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC-eEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKN-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
|+|.|+|++|++++.||.|++|+.... ....++..+...|.+++. .+.+|++++.+++|.+|.+.. +..-..+..
T Consensus 19 i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps-~~~~~iL~R- 94 (933)
T KOG1274|consen 19 ICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPS-GEEDTILAR- 94 (933)
T ss_pred EEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCC-CCccceeee-
Confidence 478999999999999999999997654 333444446677777764 566999999999999999874 333333444
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
..-+++++ ++.+|++++.|+.|-.|++.++........+++|.. +|.++.|+|++.+||+.+.||.+++|++.++...
T Consensus 95 ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a-pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~ 173 (933)
T KOG1274|consen 95 FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA-PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILS 173 (933)
T ss_pred eeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCC-ceeeeeEcCCCCEEEEEecCceEEEEEcccchhh
Confidence 56678888 899999999999999999999999989999999955 9999999999999999999999999999877654
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.2e-16 Score=112.25 Aligned_cols=153 Identities=15% Similarity=0.198 Sum_probs=114.4
Q ss_pred CcccccC-CEEEEEcCCCeEEEEEcCCCeEEEee---cCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcc--c---
Q 028802 1 MTFAADA-MKLLGTSGDGTLSVCNLRKNTVQTRS---EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--D--- 71 (203)
Q Consensus 1 l~~sp~~-~~l~~~~~d~~i~v~d~~~~~~~~~~---~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~--~--- 71 (203)
|.|.|.. ++|++++.|..|++|++++..++..+ .+|...|.++.|++++.+|++++.|.++++|++.... .
T Consensus 141 ik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE 220 (385)
T KOG1034|consen 141 IKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLE 220 (385)
T ss_pred hhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhh
Confidence 3466754 68999999999999999999888777 5799999999999999999999999999999996210 0
Q ss_pred -------------------cceeee--------------------------------------------c----------
Q 028802 72 -------------------CSDRFV--------------------------------------------G---------- 78 (203)
Q Consensus 72 -------------------~~~~~~--------------------------------------------~---------- 78 (203)
..-.+. .
T Consensus 221 ~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~ 300 (385)
T KOG1034|consen 221 LSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGE 300 (385)
T ss_pred hhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeE
Confidence 000000 0
Q ss_pred --CCCCceeEE---EeeCCCEEEEEcCCCcEEEEEccCCcee--eeeccC-CCcceEEEEEeCCCCeEEEEeCCCcEEEE
Q 028802 79 --LSPNSVDAL---LKLDEDRVITGSENGLISLVGILPNRII--QPIAEH-SEYPIESLALSHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 79 --~~~~~v~~~---~~~~~~~l~~~~~dg~v~v~d~~~~~~~--~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~iw 150 (203)
+....++-+ |.|-++.|+.|...|.|.+||++...+. .++..+ ....|...+|+.|+..|+..+.|+.|.-|
T Consensus 301 ~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrw 380 (385)
T KOG1034|consen 301 FDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRW 380 (385)
T ss_pred eccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEE
Confidence 011223344 3555677889999999999999876542 222211 12379999999999999999999999999
Q ss_pred eCC
Q 028802 151 DLD 153 (203)
Q Consensus 151 d~~ 153 (203)
|..
T Consensus 381 drv 383 (385)
T KOG1034|consen 381 DRV 383 (385)
T ss_pred Eee
Confidence 864
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.7e-16 Score=110.99 Aligned_cols=152 Identities=15% Similarity=0.234 Sum_probs=117.4
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCC
Q 028802 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 82 (203)
+++-...+++|+.|++|++||.+.......+.. ...|.++.. .++.|++|+.+..+.+||+++.....+.-...-..
T Consensus 102 ~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lky 178 (323)
T KOG1036|consen 102 YSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKY 178 (323)
T ss_pred eeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhcccccee
Confidence 445567899999999999999987555555554 347887765 57899999999999999999755444332322456
Q ss_pred ceeEE-EeeCCCEEEEEcCCCcEEEEEccCC----ceeeeeccCCC--------cceEEEEEeCCCCeEEEEeCCCcEEE
Q 028802 83 SVDAL-LKLDEDRVITGSENGLISLVGILPN----RIIQPIAEHSE--------YPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~----~~~~~~~~~~~--------~~i~~~~~~~~~~~l~~~~~d~~i~i 149 (203)
.++++ +.|++.-+++++.+|.|.+=.+... .....++.|.. .+|.+|+|+|--..|+||+.||.|.+
T Consensus 179 qtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~ 258 (323)
T KOG1036|consen 179 QTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNI 258 (323)
T ss_pred EEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEE
Confidence 78899 7899999999999999998766654 33445555532 37999999999899999999999999
Q ss_pred EeCCCccc
Q 028802 150 WDLDDILK 157 (203)
Q Consensus 150 wd~~~~~~ 157 (203)
||+.+.+.
T Consensus 259 Wd~~~rKr 266 (323)
T KOG1036|consen 259 WDLFNRKR 266 (323)
T ss_pred ccCcchhh
Confidence 99977653
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-16 Score=120.53 Aligned_cols=151 Identities=13% Similarity=0.154 Sum_probs=114.4
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEe--------------------------------------
Q 028802 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLM-------------------------------------- 46 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~-------------------------------------- 46 (203)
....++++|+..+.|+|||++...+.+.++.|...|+++.++
T Consensus 89 s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvR 168 (673)
T KOG4378|consen 89 SQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVR 168 (673)
T ss_pred hcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEE
Confidence 345788999999999999998655555666666666555544
Q ss_pred -----eCCC-EEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCCceeeee
Q 028802 47 -----KNGR-KVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQPI 118 (203)
Q Consensus 47 -----~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~-~~~l~~~~~dg~v~v~d~~~~~~~~~~ 118 (203)
|..+ +|.+++.+|.|.+||+............ |..+...+ |+|. ..+|++.+.|..|.+||+++.+....+
T Consensus 169 ll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~-HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l 247 (673)
T KOG4378|consen 169 LLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEA-HSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL 247 (673)
T ss_pred EeecccccceeeEeeccCCeEEEEeccCCCcccchhhh-ccCCcCcceecCCccceEEEecccceEEEeeccccccccee
Confidence 3222 4556777888999998643233333344 88888888 8885 456778899999999999987777777
Q ss_pred ccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 119 AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 119 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
... . +.+.++|.++|.+|+.|...|.|..||++.....
T Consensus 248 ~y~-~-Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P 285 (673)
T KOG4378|consen 248 TYS-H-PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP 285 (673)
T ss_pred eec-C-CcceeeecCCceEEEeecCCceEEEEecccCCCC
Confidence 654 2 7899999999999999999999999999887543
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.2e-16 Score=113.23 Aligned_cols=151 Identities=17% Similarity=0.219 Sum_probs=117.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEc-CCCeE--EE-ee----cCCcccEEEEEEeeC-CCEEEEecCCCeEEEEEcCCccc
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNL-RKNTV--QT-RS----EFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~-~~~~~--~~-~~----~~~~~~i~~l~~~~~-~~~l~~~~~d~~i~v~d~~~~~~ 71 (203)
|+|+|||.+|++|. .+.|+++|+ +.|.. .. ++ .+..+.|.+++|+|. ...+++++....+-||.-. ...
T Consensus 164 L~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~-~~~ 241 (406)
T KOG2919|consen 164 LQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD-GRR 241 (406)
T ss_pred EEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecC-CCC
Confidence 57999999999875 489999999 44421 11 11 233567889999994 4588999988888777665 357
Q ss_pred cceeeecCCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccC-CceeeeeccCCC---cceEEEEEeCCCCeEEEEeCCC
Q 028802 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILP-NRIIQPIAEHSE---YPIESLALSHDRKFLGSISHDS 145 (203)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-dg~v~v~d~~~-~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~d~ 145 (203)
++..+-+ |.+.|+.+ |.++|+.+++|.. +-.|..||++. +.++..+..|.+ .+| -....|++++|++|+.||
T Consensus 242 pl~llgg-h~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI-~FDld~~~~~LasG~tdG 319 (406)
T KOG2919|consen 242 PLQLLGG-HGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRI-LFDLDPKGEILASGDTDG 319 (406)
T ss_pred ceeeecc-cCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceE-EEecCCCCceeeccCCCc
Confidence 7888889 99999999 9999999999987 56799999985 456666665533 133 346678999999999999
Q ss_pred cEEEEeCCCc
Q 028802 146 MLKLWDLDDI 155 (203)
Q Consensus 146 ~i~iwd~~~~ 155 (203)
.|++||+.+.
T Consensus 320 ~V~vwdlk~~ 329 (406)
T KOG2919|consen 320 SVRVWDLKDL 329 (406)
T ss_pred cEEEEecCCC
Confidence 9999999884
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.5e-16 Score=110.82 Aligned_cols=142 Identities=15% Similarity=0.242 Sum_probs=114.1
Q ss_pred EEEEEcCCCeEEEEEcCCCeE----------EEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc--c-ee
Q 028802 9 KLLGTSGDGTLSVCNLRKNTV----------QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC--S-DR 75 (203)
Q Consensus 9 ~l~~~~~d~~i~v~d~~~~~~----------~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~--~-~~ 75 (203)
+|++|..+|.+.+||+.++.. ......|..+|.++.+.+.-..=++++.+-.+.+|.+...... + ..
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e 246 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE 246 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccce
Confidence 457788899999999998733 3334468889999999876555577777888899988643111 1 12
Q ss_pred eecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028802 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
+.. ....+..+ .-||++.+++++.|+.|+||.-++..++..+..|.. .|.+++|+|+...+|.++.|..|.+|++
T Consensus 247 ~~l-knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa-gvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 247 ITL-KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA-GVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEe-cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc-ceeEEEeCCCCchhhhccCCceEEeeec
Confidence 222 34456666 799999999999999999999999999999999965 8999999999999999999999999986
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-15 Score=108.07 Aligned_cols=155 Identities=17% Similarity=0.305 Sum_probs=107.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEE------------------------------------
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVV------------------------------------ 44 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~------------------------------------ 44 (203)
++||++|++|++++.|..|.+||+..|.+++.+.. .++|+...
T Consensus 71 l~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf-~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d 149 (405)
T KOG1273|consen 71 LCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF-DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDD 149 (405)
T ss_pred EEecCCCCEeeeecCCceeEEEeccCCCceeEEEc-cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCc
Confidence 58999999999999999999999998876655532 22232222
Q ss_pred -----------EeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCC-Cce----------------------------
Q 028802 45 -----------LMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP-NSV---------------------------- 84 (203)
Q Consensus 45 -----------~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-~~v---------------------------- 84 (203)
|.+.|+++++|...|.+.+|+..+. +++..+.- .. ..|
T Consensus 150 ~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~-e~vas~ri-ts~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 150 GDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL-ECVASFRI-TSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISD 227 (405)
T ss_pred cccccccccccccCCCCEEEEecCcceEEEEecchh-eeeeeeee-chheeeeEEEEeccCcEEEEecCCceEEEEehhh
Confidence 3344779999999999999998643 23222211 00 111
Q ss_pred --------------------------eEEEeeCCCEEEEEcC-CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCe
Q 028802 85 --------------------------DALLKLDEDRVITGSE-NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF 137 (203)
Q Consensus 85 --------------------------~~~~~~~~~~l~~~~~-dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 137 (203)
.++|+.+|.+++.++. ...+++|.-..|..+..+.+..+.....+.|+|-...
T Consensus 228 i~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~ 307 (405)
T KOG1273|consen 228 IDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPI 307 (405)
T ss_pred hcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceee
Confidence 2236667777666553 4557777777777777777765446778889999888
Q ss_pred EEEEeCCCcEEEEeCCCcccCC
Q 028802 138 LGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 138 l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
+++. ..|.+++|.....+...
T Consensus 308 i~si-~sg~v~iw~~~~~enws 328 (405)
T KOG1273|consen 308 IASI-ASGVVYIWAVVQVENWS 328 (405)
T ss_pred eeec-cCCceEEEEeecccchh
Confidence 8877 68899999987766553
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-15 Score=112.52 Aligned_cols=146 Identities=13% Similarity=0.155 Sum_probs=125.2
Q ss_pred CEEEEEcCC--CeEEEEEcCCCeEEEeecCC---------cccEEEEEEeeC--CCEEEEecCCCeEEEEEcCCccccce
Q 028802 8 MKLLGTSGD--GTLSVCNLRKNTVQTRSEFS---------EEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFKDCSD 74 (203)
Q Consensus 8 ~~l~~~~~d--~~i~v~d~~~~~~~~~~~~~---------~~~i~~l~~~~~--~~~l~~~~~d~~i~v~d~~~~~~~~~ 74 (203)
..+++|+.. ..+.+||+.+.+.+..-+.. +-.++++.|.+. ...|++++.-+.+++||.+....++.
T Consensus 162 ~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~ 241 (412)
T KOG3881|consen 162 YIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVA 241 (412)
T ss_pred ceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCccee
Confidence 356778888 88999999987666544432 234567888887 78999999999999999998888888
Q ss_pred eeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeee-eccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028802 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQP-IAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
.|.- ...++.++ ..|.+++|++|...+.+..+|++.++.+.. +.+-++ .|+++..+|..++|++++.|+.++|+|+
T Consensus 242 ~fd~-~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG-sirsih~hp~~~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 242 QFDF-LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG-SIRSIHCHPTHPVLASCGLDRYVRIHDI 319 (412)
T ss_pred Eecc-ccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccC-CcceEEEcCCCceEEeeccceeEEEeec
Confidence 8887 78899999 899999999999999999999999988876 666655 8999999999999999999999999999
Q ss_pred CCc
Q 028802 153 DDI 155 (203)
Q Consensus 153 ~~~ 155 (203)
.+.
T Consensus 320 ktr 322 (412)
T KOG3881|consen 320 KTR 322 (412)
T ss_pred ccc
Confidence 884
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-15 Score=118.60 Aligned_cols=157 Identities=17% Similarity=0.233 Sum_probs=116.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEe--ecCCcccEEEEEEeeCC-CEEEEecCCCeEEEEEcCCccc------
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTR--SEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKD------ 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~i~~l~~~~~~-~~l~~~~~d~~i~v~d~~~~~~------ 71 (203)
+.|-|....|++++.|.++++||+.++.++.. +.+|...|.+++|.|.. ..|++|+.||.|.|||++-.+.
T Consensus 106 l~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~ 185 (720)
T KOG0321|consen 106 LKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEF 185 (720)
T ss_pred eccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHH
Confidence 46778556789999999999999999888766 78999999999999954 6788999999999999974320
Q ss_pred -------------cceee-------ecCCCCc----eeEEEeeCCCEEEEEcC-CCcEEEEEccCCcee------ee--e
Q 028802 72 -------------CSDRF-------VGLSPNS----VDALLKLDEDRVITGSE-NGLISLVGILPNRII------QP--I 118 (203)
Q Consensus 72 -------------~~~~~-------~~~~~~~----v~~~~~~~~~~l~~~~~-dg~v~v~d~~~~~~~------~~--~ 118 (203)
..+.+ .. +... |+.++..|...|++++. |+.|+|||++..... .. +
T Consensus 186 ~~~~~~~~n~~ptpskp~~kr~~k~kA-~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~ 264 (720)
T KOG0321|consen 186 DNRIYGRHNTAPTPSKPLKKRIRKWKA-ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKY 264 (720)
T ss_pred hhhhhccccCCCCCCchhhcccccccc-ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCc
Confidence 00000 11 2222 44447888899998887 999999999864322 11 1
Q ss_pred ccCC--CcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 119 AEHS--EYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 119 ~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
..|. ...+.++.....|.+|.+.+.|+.|++|++.+....
T Consensus 265 ~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~s 306 (720)
T KOG0321|consen 265 PTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSIS 306 (720)
T ss_pred cCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcC
Confidence 1221 125777888888899988888999999999887543
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.2e-15 Score=109.59 Aligned_cols=145 Identities=18% Similarity=0.281 Sum_probs=111.1
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEE-EEecCCCeEEEEEcCCccccceeeecCCCCcee
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~ 85 (203)
+..+++++.|+.|++||+.+++.+..+..+. .+.+++|+|++..+ ++++.++.|++||+.. +.....+.. +.. +.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~-~~~-~~ 76 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLAT-GEVIGTLPS-GPD-PE 76 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCC-CcEEEeccC-CCC-cc
Confidence 3568889999999999999988888877654 46789999999876 5667789999999875 344444544 333 34
Q ss_pred EE-EeeCCCEEEEE-cCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCC-cEEEEeCCCccc
Q 028802 86 AL-LKLDEDRVITG-SENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS-MLKLWDLDDILK 157 (203)
Q Consensus 86 ~~-~~~~~~~l~~~-~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~ 157 (203)
.+ ++|+++.++++ ..++.|++||+.+++.+..+..+ . .+.+++|+|++.+++++..++ .+.+||..+...
T Consensus 77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~-~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~ 149 (300)
T TIGR03866 77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-V-EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI 149 (300)
T ss_pred EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-C-CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE
Confidence 55 89999987665 45889999999988877777543 2 468899999999999888664 567789876543
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.3e-16 Score=115.28 Aligned_cols=153 Identities=15% Similarity=0.267 Sum_probs=127.2
Q ss_pred cccccCC-EEEEEcCCCeEEEEEcCCC---------eEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCc--
Q 028802 2 TFAADAM-KLLGTSGDGTLSVCNLRKN---------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF-- 69 (203)
Q Consensus 2 ~~sp~~~-~l~~~~~d~~i~v~d~~~~---------~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~-- 69 (203)
.|.++.. .|++|+.|..|++|-+..+ ..+..+..|...|+.+.|+|+|..|++|+.+|.+.+|.....
T Consensus 20 dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~ 99 (434)
T KOG1009|consen 20 DFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRI 99 (434)
T ss_pred EeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCC
Confidence 3555555 8999999999999988642 234566789999999999999999999999999999976510
Q ss_pred -------------cccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCC
Q 028802 70 -------------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR 135 (203)
Q Consensus 70 -------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 135 (203)
......+.+ |...+..+ |+|++.++++++.|..+++||+..|..+..+..|.. -+..++|.|-+
T Consensus 100 ~~~d~e~~~~ke~w~v~k~lr~-h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~-yvqgvawDpl~ 177 (434)
T KOG1009|consen 100 FDADTEADLNKEKWVVKKVLRG-HRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH-YVQGVAWDPLN 177 (434)
T ss_pred ccccchhhhCccceEEEEEecc-cccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccc-ccceeecchhh
Confidence 112234556 77888889 999999999999999999999999999999999855 68999999999
Q ss_pred CeEEEEeCCCcEEEEeCCCcc
Q 028802 136 KFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 136 ~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+++++-+.|+..+++.+....
T Consensus 178 qyv~s~s~dr~~~~~~~~~~~ 198 (434)
T KOG1009|consen 178 QYVASKSSDRHPEGFSAKLKQ 198 (434)
T ss_pred hhhhhhccCcccceeeeeeee
Confidence 999999999988887765544
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.3e-15 Score=112.98 Aligned_cols=149 Identities=17% Similarity=0.215 Sum_probs=120.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
++.+|+.+++++++.|+.+++|+ ..++..+... ..++.++.|+|.| .++.|...|...+.|..+ ..+-.+.. .
T Consensus 374 la~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~-~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~--~~lv~~~~-d 446 (626)
T KOG2106|consen 374 LATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKII-EDPAECADFHPSG-VVAVGTATGRWFVLDTET--QDLVTIHT-D 446 (626)
T ss_pred EEcCCChhheeeccCcceEEEcc--CCceeEEEEe-cCceeEeeccCcc-eEEEeeccceEEEEeccc--ceeEEEEe-c
Confidence 35678899999999999999999 4555554443 5678999999999 999999999999999875 33344444 5
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccC-CceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
..++.++ |+|+|.+|+.|+.|+.|++|-+.. +.......-+...+|+.+.|++|+++|.+-+.|-.|..|......
T Consensus 447 ~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~ 524 (626)
T KOG2106|consen 447 NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECK 524 (626)
T ss_pred CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCc
Confidence 7788999 999999999999999999998864 444444433334689999999999999999999999999544333
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-15 Score=116.50 Aligned_cols=109 Identities=26% Similarity=0.316 Sum_probs=91.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC--------CeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcc--
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRK--------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-- 70 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~--------~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~-- 70 (203)
++|.|....|++++.||+|.+|+++. -+++.++.+|.++|.|++..+.+..+++|+.||+|+.|.+....
T Consensus 300 l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp 379 (577)
T KOG0642|consen 300 LAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDP 379 (577)
T ss_pred hhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCc
Confidence 46778888999999999999999932 15678999999999999999999999999999999999664221
Q ss_pred -------ccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEcc
Q 028802 71 -------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL 110 (203)
Q Consensus 71 -------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~ 110 (203)
.....+.+ |...++.+ +++....|++++.||+|++|...
T Consensus 380 ~ds~dp~vl~~~l~G-htdavw~l~~s~~~~~Llscs~DgTvr~w~~~ 426 (577)
T KOG0642|consen 380 DDSYDPSVLSGTLLG-HTDAVWLLALSSTKDRLLSCSSDGTVRLWEPT 426 (577)
T ss_pred ccccCcchhccceec-cccceeeeeecccccceeeecCCceEEeeccC
Confidence 23345778 88899888 78888889999999999999763
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.1e-15 Score=118.25 Aligned_cols=151 Identities=13% Similarity=0.076 Sum_probs=120.5
Q ss_pred CcccccCCEEEEEcC-----CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc---
Q 028802 1 MTFAADAMKLLGTSG-----DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC--- 72 (203)
Q Consensus 1 l~~sp~~~~l~~~~~-----d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~--- 72 (203)
++.||+++++|++.. ...|++|+..+......+.+|.-.|+.|+|+||+++|++.+.|.++.+|.....-..
T Consensus 531 l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~ 610 (764)
T KOG1063|consen 531 LAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFR 610 (764)
T ss_pred EEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhh
Confidence 467899999999865 346999999988888889999999999999999999999999999999988532111
Q ss_pred ceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC--ceeee--eccCCCcceEEEEEeC----CCC-eEEEEe
Q 028802 73 SDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN--RIIQP--IAEHSEYPIESLALSH----DRK-FLGSIS 142 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~--~~~~~--~~~~~~~~i~~~~~~~----~~~-~l~~~~ 142 (203)
....+. |..-|+.+ |+|++.++++++.|..|.+|..... +.+.. ...+.. +|+.++|.| +.. .++.|-
T Consensus 611 fa~~k~-HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~-aVTAv~~~~~~~~e~~~~vavGl 688 (764)
T KOG1063|consen 611 FACLKA-HTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSL-AVTAVAYLPVDHNEKGDVVAVGL 688 (764)
T ss_pred hccccc-cceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCC-ceeeEEeeccccccccceEEEEe
Confidence 122455 88889999 9999999999999999999998766 33333 223323 899999877 222 566777
Q ss_pred CCCcEEEEeCC
Q 028802 143 HDSMLKLWDLD 153 (203)
Q Consensus 143 ~d~~i~iwd~~ 153 (203)
..|.|.+|...
T Consensus 689 e~GeI~l~~~~ 699 (764)
T KOG1063|consen 689 EKGEIVLWRRK 699 (764)
T ss_pred cccEEEEEecc
Confidence 99999999965
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2e-15 Score=113.45 Aligned_cols=146 Identities=20% Similarity=0.242 Sum_probs=119.0
Q ss_pred CEEEEEcC-CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeE
Q 028802 8 MKLLGTSG-DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 8 ~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~ 86 (203)
++++++.. -..|.+|.+..........--.++|.+++-+|.|.+|+.|+..|.|++|.+.+ +..+..+.. |-..|+|
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss-G~LL~v~~a-HYQ~ITc 128 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSS-GILLNVLSA-HYQSITC 128 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEecc-ccHHHHHHh-hccceeE
Confidence 45555533 34688888876433332223367899999999999999998999999999975 788888888 9999999
Q ss_pred E-EeeCCCEEEEEcCCCcEEEEEcc---------CCceeeeeccCCCcceEEEEEeCCC--CeEEEEeCCCcEEEEeCCC
Q 028802 87 L-LKLDEDRVITGSENGLISLVGIL---------PNRIIQPIAEHSEYPIESLALSHDR--KFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 87 ~-~~~~~~~l~~~~~dg~v~v~d~~---------~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~i~iwd~~~ 154 (203)
+ |+-+|.+|++|+.||.|.+|.+. +-+++..+..|+. +|+.+...+.| .+|++++.|.++++||+..
T Consensus 129 L~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Htl-sITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~ 207 (476)
T KOG0646|consen 129 LKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTL-SITDLQIGSGGTNARLYTASEDRTIKLWDLSL 207 (476)
T ss_pred EEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcc-eeEEEEecCCCccceEEEecCCceEEEEEecc
Confidence 9 99999999999999999999873 2357788889966 89999887754 6899999999999999987
Q ss_pred cc
Q 028802 155 IL 156 (203)
Q Consensus 155 ~~ 156 (203)
+.
T Consensus 208 g~ 209 (476)
T KOG0646|consen 208 GV 209 (476)
T ss_pred ce
Confidence 74
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.2e-16 Score=117.26 Aligned_cols=155 Identities=15% Similarity=0.234 Sum_probs=129.6
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC--------------------------------------CcccEEEE
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF--------------------------------------SEEELTSV 43 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--------------------------------------~~~~i~~l 43 (203)
.++.+|++|+.|+.-|.|-.+|..++.+...+.. ....|..+
T Consensus 136 ~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~~~v~rL 215 (545)
T KOG1272|consen 136 DYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRHIRVARL 215 (545)
T ss_pred eecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhcCchhhh
Confidence 4677899999999999999988888765543321 11345567
Q ss_pred EEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC
Q 028802 44 VLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS 122 (203)
Q Consensus 44 ~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~ 122 (203)
.|.|..-+|++++..|.++.-|+.+ +..+..+.. ..+.+..+ -+|-+..+-+|...|+|.+|...+..++..+..|.
T Consensus 216 eFLPyHfLL~~~~~~G~L~Y~DVS~-GklVa~~~t-~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~ 293 (545)
T KOG1272|consen 216 EFLPYHFLLVAASEAGFLKYQDVST-GKLVASIRT-GAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHR 293 (545)
T ss_pred cccchhheeeecccCCceEEEeech-hhhhHHHHc-cCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcC
Confidence 7888777889999999999999975 677777776 67777777 79999999999999999999999999998899996
Q ss_pred CcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028802 123 EYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 123 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
+ +|.++++.++|+|++|.+.|+.++|||+++..+-+
T Consensus 294 g-~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~ 329 (545)
T KOG1272|consen 294 G-PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLH 329 (545)
T ss_pred C-CcceEEECCCCcEEeecccccceeEeeeccccccc
Confidence 6 99999999999999999999999999999987543
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.2e-14 Score=102.30 Aligned_cols=153 Identities=14% Similarity=0.224 Sum_probs=112.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC----eEEEeecCCcccEEEEEEee--CCCEEEEecCCCeEEEEEcCCc-----
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKN----TVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYF----- 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~----~~~~~~~~~~~~i~~l~~~~--~~~~l~~~~~d~~i~v~d~~~~----- 69 (203)
+.|.+-|+++|+|+.|++|+|||.... .+....+.|.+.|..+.|.+ -|+.+++++.|+++.||.-...
T Consensus 19 Vs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~ 98 (361)
T KOG2445|consen 19 VSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAH 98 (361)
T ss_pred eeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccc
Confidence 468889999999999999999997532 45566778999999999976 5799999999999999975211
Q ss_pred c---ccceeeecCCCCceeEE-Eee--CCCEEEEEcCCCcEEEEEccCC--------------------c----------
Q 028802 70 K---DCSDRFVGLSPNSVDAL-LKL--DEDRVITGSENGLISLVGILPN--------------------R---------- 113 (203)
Q Consensus 70 ~---~~~~~~~~~~~~~v~~~-~~~--~~~~l~~~~~dg~v~v~d~~~~--------------------~---------- 113 (203)
+ ....++.. ....|+.+ |.| -|-.+++++.||.|+||+...- +
T Consensus 99 ~~~Wv~~ttl~D-srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsW 177 (361)
T KOG2445|consen 99 GRRWVRRTTLVD-SRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSW 177 (361)
T ss_pred cceeEEEEEeec-CCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEee
Confidence 1 11233444 56778888 866 4667888888998888865210 0
Q ss_pred -------------------------------------eeeeeccCCCcceEEEEEeCC-C---CeEEEEeCCCcEEEEeC
Q 028802 114 -------------------------------------IIQPIAEHSEYPIESLALSHD-R---KFLGSISHDSMLKLWDL 152 (203)
Q Consensus 114 -------------------------------------~~~~~~~~~~~~i~~~~~~~~-~---~~l~~~~~d~~i~iwd~ 152 (203)
.+.++..|+. +|+.++|.|+ | ..||+++.|| |+||.+
T Consensus 178 n~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d-pI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v 255 (361)
T KOG2445|consen 178 NPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD-PIRDISWAPNIGRSYHLLAVATKDG-VRIFKV 255 (361)
T ss_pred ccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC-cceeeeeccccCCceeeEEEeecCc-EEEEEE
Confidence 0111223444 8999999995 2 3588999999 999999
Q ss_pred CCcc
Q 028802 153 DDIL 156 (203)
Q Consensus 153 ~~~~ 156 (203)
....
T Consensus 256 ~~~~ 259 (361)
T KOG2445|consen 256 KVAR 259 (361)
T ss_pred eecc
Confidence 7644
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.2e-15 Score=107.53 Aligned_cols=142 Identities=12% Similarity=0.150 Sum_probs=118.4
Q ss_pred Cccccc-CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC-CCeEEEEEcCCccccceeeec
Q 028802 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~ 78 (203)
++|||- .+.++.|+....+-||.-....++..+-+|.+.|+.+.|.++|+.|++|.. +-.|.+||++....++-.+..
T Consensus 213 ~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~r 292 (406)
T KOG2919|consen 213 FAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALER 292 (406)
T ss_pred eeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhh
Confidence 468884 458999999999999998888888889999999999999999999999986 678999999988888777776
Q ss_pred CCCCc-eeEE-E--eeCCCEEEEEcCCCcEEEEEccC-CceeeeeccCCCcceEEEEEeCCCCeEEEEeCC
Q 028802 79 LSPNS-VDAL-L--KLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 79 ~~~~~-v~~~-~--~~~~~~l~~~~~dg~v~v~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 144 (203)
|... -..| | .|++++|++|+.+|.|++||+.. +.....+..+.. .+..++++|-=..+++++..
T Consensus 293 -hv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd-~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 293 -HVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD-TVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred -hccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc-cccceecCcccceeeeccCc
Confidence 6652 2233 4 78999999999999999999987 676777777755 78999999997777777643
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.4e-15 Score=113.67 Aligned_cols=93 Identities=14% Similarity=0.253 Sum_probs=82.8
Q ss_pred cccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCcee
Q 028802 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRII 115 (203)
Q Consensus 37 ~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~ 115 (203)
.+.|...+|+|||++|++.+.||.++|||+.+ ..++..++. .-+.+.|+ |+|||++|++|++|-.|.||.+..++.+
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt-~eLlg~mkS-YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVV 367 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDT-QELLGVMKS-YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVV 367 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccH-HHHHHHHHh-hccceEEEEEcCCccEEEecCCcceEEEEEeccceEE
Confidence 45788999999999999999999999999974 466666676 67778888 9999999999999999999999999999
Q ss_pred eeeccCCCcceEEEEEe
Q 028802 116 QPIAEHSEYPIESLALS 132 (203)
Q Consensus 116 ~~~~~~~~~~i~~~~~~ 132 (203)
..-.+|.. +|..|+|.
T Consensus 368 ARGqGHkS-WVs~VaFD 383 (636)
T KOG2394|consen 368 ARGQGHKS-WVSVVAFD 383 (636)
T ss_pred Eecccccc-ceeeEeec
Confidence 99999954 89999998
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.2e-15 Score=116.91 Aligned_cols=157 Identities=15% Similarity=0.231 Sum_probs=117.5
Q ss_pred EEEEEcCCCeEEEEEcCCC---eEEE-ee---------------------------------cCCcccEEEEEEeeCCCE
Q 028802 9 KLLGTSGDGTLSVCNLRKN---TVQT-RS---------------------------------EFSEEELTSVVLMKNGRK 51 (203)
Q Consensus 9 ~l~~~~~d~~i~v~d~~~~---~~~~-~~---------------------------------~~~~~~i~~l~~~~~~~~ 51 (203)
.+++++.|++|++|++..+ ...+ .+ -.....+.+++.+|+|++
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh 473 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH 473 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence 4788999999999998742 1110 00 012446899999999999
Q ss_pred EEEecCCCeEEEEEcCCccccceeeecCCCCceeEE-Ee-e--CCCEEEEEcCCCcEEEEEccCC-ceeeeeccC-----
Q 028802 52 VVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LK-L--DEDRVITGSENGLISLVGILPN-RIIQPIAEH----- 121 (203)
Q Consensus 52 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~-~--~~~~l~~~~~dg~v~v~d~~~~-~~~~~~~~~----- 121 (203)
|++|...|+++||++.. -.....+.. |...|.|+ |+ | ..++|++++.|+.|+|||.... .+++++.+|
T Consensus 474 LAsGDr~GnlrVy~Lq~-l~~~~~~eA-HesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssIT 551 (1080)
T KOG1408|consen 474 LASGDRGGNLRVYDLQE-LEYTCFMEA-HESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSIT 551 (1080)
T ss_pred ecccCccCceEEEEehh-hhhhhheec-ccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhccccccee
Confidence 99999999999999975 355556777 99999999 73 4 4578999999999999997421 111221111
Q ss_pred ---------------------------------------C----CcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 122 ---------------------------------------S----EYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 122 ---------------------------------------~----~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
+ ...++.|+..|...++++++.|+.|+||++.++++.
T Consensus 552 svKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~ 631 (1080)
T KOG1408|consen 552 SVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV 631 (1080)
T ss_pred EEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccccee
Confidence 0 014788888999999999999999999999999988
Q ss_pred CCCCcCCCC
Q 028802 159 SGNNISQAA 167 (203)
Q Consensus 159 ~~~~~~~~~ 167 (203)
..++...++
T Consensus 632 k~FKgs~~~ 640 (1080)
T KOG1408|consen 632 KSFKGSRDH 640 (1080)
T ss_pred eeecccccC
Confidence 777765433
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.1e-15 Score=109.98 Aligned_cols=147 Identities=12% Similarity=0.099 Sum_probs=114.1
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCe---EEE------------------eecCCcccEEEEEEeeC-CCEEEEecCCCeEEE
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNT---VQT------------------RSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLL 63 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~---~~~------------------~~~~~~~~i~~l~~~~~-~~~l~~~~~d~~i~v 63 (203)
.|+++|.|+.+..|.|||+.--. +.. ...+|...|..|+|+.. .+.|++|+.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 36899999999999999985210 000 11257777888888874 467899999999999
Q ss_pred EEcCCccccceeeecCCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccC-CceeeeeccCCCcceEEEEEeCCCC-eEE
Q 028802 64 YSWGYFKDCSDRFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRK-FLG 139 (203)
Q Consensus 64 ~d~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~dg~v~v~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~~-~l~ 139 (203)
||+.+ +++...+.. |...|.++ |+| .+.++++|+.|++|.++|.+. ...-..+... + .|..++|.|... .++
T Consensus 271 WD~~~-g~p~~s~~~-~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~-g-~VEkv~w~~~se~~f~ 346 (463)
T KOG0270|consen 271 WDVDT-GKPKSSITH-HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD-G-EVEKVAWDPHSENSFF 346 (463)
T ss_pred EEcCC-CCcceehhh-cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec-c-ceEEEEecCCCceeEE
Confidence 99985 688888888 99999999 877 567888999999999999984 2222333333 2 689999999765 466
Q ss_pred EEeCCCcEEEEeCCCcc
Q 028802 140 SISHDSMLKLWDLDDIL 156 (203)
Q Consensus 140 ~~~~d~~i~iwd~~~~~ 156 (203)
++..||.++-+|+|...
T Consensus 347 ~~tddG~v~~~D~R~~~ 363 (463)
T KOG0270|consen 347 VSTDDGTVYYFDIRNPG 363 (463)
T ss_pred EecCCceEEeeecCCCC
Confidence 77789999999999874
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-15 Score=117.31 Aligned_cols=148 Identities=13% Similarity=0.198 Sum_probs=127.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
+.|+|...+|++++. ..|+|||+....++..+......|.+++++|.|..|+.++.++.+..||+.....+.+++.- |
T Consensus 572 v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~-H 649 (733)
T KOG0650|consen 572 VKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRL-H 649 (733)
T ss_pred EEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhh-h
Confidence 368898888888877 78999999988777777777788999999999999999999999999999877788888988 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEcc------CC---ceeeeeccCCC---cceEEEEEeCCCCeEEEEeCCCcE
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGIL------PN---RIIQPIAEHSE---YPIESLALSHDRKFLGSISHDSML 147 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~------~~---~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~d~~i 147 (203)
...++.+ |++.-.++++|+.||.+.|+.-. .. -++..+++|.. ..|..+.|+|...+|++++.||+|
T Consensus 650 ~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~ti 729 (733)
T KOG0650|consen 650 EKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTI 729 (733)
T ss_pred hhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceE
Confidence 9999999 99999999999999999988532 11 24566777743 247788899999999999999999
Q ss_pred EEE
Q 028802 148 KLW 150 (203)
Q Consensus 148 ~iw 150 (203)
++|
T Consensus 730 rlf 732 (733)
T KOG0650|consen 730 RLF 732 (733)
T ss_pred Eee
Confidence 998
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-14 Score=104.58 Aligned_cols=151 Identities=11% Similarity=0.110 Sum_probs=121.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC---eEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcc--cccee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--DCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~--~~~~~ 75 (203)
.+|++|+..+|.+.....|.||..... +...++..|...|+.+.|+|..+.|++++.|..-+||.....+ ++.-.
T Consensus 16 hAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkptlv 95 (361)
T KOG1523|consen 16 HAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLV 95 (361)
T ss_pred eeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeecccee
Confidence 379999999999999999999998754 5678888999999999999999999999999999999884322 12223
Q ss_pred eecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCcee---eeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028802 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRII---QPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 151 (203)
+.. +....+++ |+|.++.|++|+..+.|.||-++...-- +.+.-.-...|.++.|+|++-.|++|+.|+..+||.
T Consensus 96 LlR-iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfS 174 (361)
T KOG1523|consen 96 LLR-INRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFS 174 (361)
T ss_pred EEE-eccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEE
Confidence 344 67788999 9999999999999999999987643221 111111133689999999999999999999999996
Q ss_pred C
Q 028802 152 L 152 (203)
Q Consensus 152 ~ 152 (203)
.
T Consensus 175 a 175 (361)
T KOG1523|consen 175 A 175 (361)
T ss_pred E
Confidence 3
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-14 Score=104.63 Aligned_cols=151 Identities=17% Similarity=0.309 Sum_probs=114.7
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEE--eecCCc-ccEEEEEEeeCCCEEEEecC----CCeEEEEEcCCccccceeeecC
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNTVQT--RSEFSE-EELTSVVLMKNGRKVVCGSQ----SGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~~~~--~~~~~~-~~i~~l~~~~~~~~l~~~~~----d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
...+.+|+.||+|++||++...... ....+. .+..+++....++.+++|+. +-.+.+||++...+.+..+...
T Consensus 84 ~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eS 163 (376)
T KOG1188|consen 84 PHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNES 163 (376)
T ss_pred CCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhh
Confidence 4568899999999999998754333 333443 56778887777888888765 5689999999876655555433
Q ss_pred CCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCc----eeeeeccCCCcceEEEEEeCCC-CeEEEEeCCCcEEEEeC
Q 028802 80 SPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNR----IIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDL 152 (203)
Q Consensus 80 ~~~~v~~~-~~~-~~~~l~~~~~dg~v~v~d~~~~~----~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~ 152 (203)
|...|+++ |+| +.++|++|+.||.|.|||+.... .+.++. + ...|..+.|..++ ..|.+.+..+...+|++
T Consensus 164 H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN-~-~sSI~~igw~~~~ykrI~clTH~Etf~~~el 241 (376)
T KOG1188|consen 164 HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN-H-GSSIHLIGWLSKKYKRIMCLTHMETFAIYEL 241 (376)
T ss_pred ccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc-c-cceeeeeeeecCCcceEEEEEccCceeEEEc
Confidence 99999999 998 56789999999999999987432 233343 3 3369999999887 45888889999999999
Q ss_pred CCcccCC
Q 028802 153 DDILKGS 159 (203)
Q Consensus 153 ~~~~~~~ 159 (203)
..+.+..
T Consensus 242 e~~~~~~ 248 (376)
T KOG1188|consen 242 EDGSEET 248 (376)
T ss_pred cCCChhh
Confidence 8776443
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-13 Score=106.60 Aligned_cols=154 Identities=26% Similarity=0.390 Sum_probs=125.2
Q ss_pred CcccccCCEEEEEcC-CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCC-EEEEecCCCeEEEEEcCCccccce-eee
Q 028802 1 MTFAADAMKLLGTSG-DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSD-RFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~-~~~ 77 (203)
++|+|+++.+++++. ++.+++|++..+..+..+..|...+.+++|+|++. .+++++.++.+++||.. .+..+. .+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~-~~~~~~~~~~ 239 (466)
T COG2319 161 LAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS-TGKLLRSTLS 239 (466)
T ss_pred EEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECC-CCcEEeeecC
Confidence 468999998888885 99999999998888888888999999999999998 55555899999999887 345555 466
Q ss_pred cCCCCceeE-EEeeCCCEEEEEcCCCcEEEEEccCCce-eeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 78 GLSPNSVDA-LLKLDEDRVITGSENGLISLVGILPNRI-IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 78 ~~~~~~v~~-~~~~~~~~l~~~~~dg~v~v~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
. |.... . .|+|++..+++++.++.+++|++..... +..+..|. ..+.++.|+|++..+++++.|+.+.+|++.+.
T Consensus 240 ~-~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 316 (466)
T COG2319 240 G-HSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHS-SSVLSVAFSPDGKLLASGSSDGTVRLWDLETG 316 (466)
T ss_pred C-CCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCC-ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCC
Confidence 6 66654 3 4899998899999999999999986654 44445563 48999999998888888888888999988776
Q ss_pred ccC
Q 028802 156 LKG 158 (203)
Q Consensus 156 ~~~ 158 (203)
...
T Consensus 317 ~~~ 319 (466)
T COG2319 317 KLL 319 (466)
T ss_pred ceE
Confidence 543
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2e-14 Score=102.67 Aligned_cols=150 Identities=14% Similarity=0.229 Sum_probs=115.1
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCe---EEEeecCCcccEEEEEEeeCC-CEEEEecCCCeEEEEEcCCccccceeeec--C
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNT---VQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRFVG--L 79 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~ 79 (203)
+-++|.+++-|-+..|||+.++. ....+-.|...|..++|...+ +.+++.+.||.+++||++.. ..-..+.. .
T Consensus 162 dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~l-eHSTIIYE~p~ 240 (364)
T KOG0290|consen 162 DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSL-EHSTIIYEDPS 240 (364)
T ss_pred CcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccc-ccceEEecCCC
Confidence 45788999999999999999862 355667899999999999865 57889999999999999853 32222322 0
Q ss_pred CCCceeEE-Eee-CCCEEEEEcCC-CcEEEEEccC-CceeeeeccCCCcceEEEEEeCCC-CeEEEEeCCCcEEEEeCCC
Q 028802 80 SPNSVDAL-LKL-DEDRVITGSEN-GLISLVGILP-NRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 80 ~~~~v~~~-~~~-~~~~l~~~~~d-g~v~v~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~ 154 (203)
...+...+ |++ +.+++++-..+ ..|.+.|++. ..++..++.|.. .|..++|.|.. .+|++++.|....+||+.+
T Consensus 241 ~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 241 PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcc-cccceEecCCCCceeeecCCcceEEEEeccc
Confidence 12345555 655 45667765544 5699999984 578889999954 89999999955 6899999999999999987
Q ss_pred ccc
Q 028802 155 ILK 157 (203)
Q Consensus 155 ~~~ 157 (203)
...
T Consensus 320 ~~~ 322 (364)
T KOG0290|consen 320 MPR 322 (364)
T ss_pred ccc
Confidence 655
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-15 Score=124.17 Aligned_cols=155 Identities=16% Similarity=0.221 Sum_probs=116.5
Q ss_pred CcccccCC-EEEEEcCCCeEEEEEcCCCeEEEee--cCCcccEEEEEEeeC-CCEEEEecCCCeEEEEEcCCccccceee
Q 028802 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRS--EFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~i~~l~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 76 (203)
|.|++.+. .||+|+.+|.|.|||+...+.-... ....+.|.+++|+.. .+.|++++.+|.+.|||++.. +.+-.+
T Consensus 122 LDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~-~pii~l 200 (1049)
T KOG0307|consen 122 LDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK-KPIIKL 200 (1049)
T ss_pred eeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC-Cccccc
Confidence 46788654 9999999999999999874433333 123567999999874 456788888999999999865 444344
Q ss_pred ecCCCC--ceeEE-EeeCC-CEEEEEcCC---CcEEEEEccC-CceeeeeccCCCcceEEEEEeCCC-CeEEEEeCCCcE
Q 028802 77 VGLSPN--SVDAL-LKLDE-DRVITGSEN---GLISLVGILP-NRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSML 147 (203)
Q Consensus 77 ~~~~~~--~v~~~-~~~~~-~~l~~~~~d---g~v~v~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i 147 (203)
.. +.+ .+..+ |+|+. ..|++++.| -.|.+||++. ..+++++++|.. .|.++.|++.+ ++|++++.|+.|
T Consensus 201 s~-~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~-GilslsWc~~D~~lllSsgkD~~i 278 (1049)
T KOG0307|consen 201 SD-TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQR-GILSLSWCPQDPRLLLSSGKDNRI 278 (1049)
T ss_pred cc-CCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccccc-ceeeeccCCCCchhhhcccCCCCe
Confidence 33 333 35666 99976 445566554 3599999885 457788888955 89999999966 788999999999
Q ss_pred EEEeCCCcccC
Q 028802 148 KLWDLDDILKG 158 (203)
Q Consensus 148 ~iwd~~~~~~~ 158 (203)
.+|+..+++.-
T Consensus 279 i~wN~~tgEvl 289 (1049)
T KOG0307|consen 279 ICWNPNTGEVL 289 (1049)
T ss_pred eEecCCCceEe
Confidence 99999997644
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-13 Score=100.55 Aligned_cols=144 Identities=17% Similarity=0.260 Sum_probs=114.8
Q ss_pred EEEEEcCCCeEEEEEcCCC---eEEEeec--CCcccEEEEEEeeC----CCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 9 KLLGTSGDGTLSVCNLRKN---TVQTRSE--FSEEELTSVVLMKN----GRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 9 ~l~~~~~d~~i~v~d~~~~---~~~~~~~--~~~~~i~~l~~~~~----~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
.+++++. +.+.+|..... ..++... .+......++|+-+ ..+++.++.-|.|+|.|+.. ..+...+.+
T Consensus 57 vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~-~~~~~~~~g- 133 (385)
T KOG1034|consen 57 VFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS-GQCSKNYRG- 133 (385)
T ss_pred eEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecch-hhhccceec-
Confidence 3444444 67888887642 3334332 35566778888764 34788888999999999974 677788899
Q ss_pred CCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCCceeeee---ccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 80 SPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQPI---AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 80 ~~~~v~~~-~~~~-~~~l~~~~~dg~v~v~d~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
|...|..+ ++|. .+++++++.|..|++|++++..++..+ .+|.+ .|.++.|+++|.+|++++.|..|++|++..
T Consensus 134 hG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrd-eVLSvD~~~~gd~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 134 HGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRD-EVLSVDFSLDGDRIASCGMDHSLKLWRLNV 212 (385)
T ss_pred cCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccC-cEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence 99999999 8885 478889999999999999999998877 45644 799999999999999999999999999985
Q ss_pred cc
Q 028802 155 IL 156 (203)
Q Consensus 155 ~~ 156 (203)
.+
T Consensus 213 ~~ 214 (385)
T KOG1034|consen 213 KE 214 (385)
T ss_pred hH
Confidence 43
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.8e-14 Score=110.48 Aligned_cols=148 Identities=17% Similarity=0.131 Sum_probs=100.5
Q ss_pred CcccccCCEEEEEcCC---CeEEEEEcCCCeE--EEeecCCcccEEEEEEeeCCCEEEEec-CCCeEEEEEcCCccccce
Q 028802 1 MTFAADAMKLLGTSGD---GTLSVCNLRKNTV--QTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d---~~i~v~d~~~~~~--~~~~~~~~~~i~~l~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~ 74 (203)
++|||||+.|++++.+ ..|++||+.+++. +..+.+ ....++|+|||+.|+++. .+|.+.+|.+........
T Consensus 209 p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~ 285 (429)
T PRK01742 209 PAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPS 285 (429)
T ss_pred ceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeE
Confidence 4799999999887643 4799999988754 333333 344689999999888764 577666654432233445
Q ss_pred eeecCCCCceeEE-EeeCCCEEEEEc-CCCcEEEEEccCC-ceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028802 75 RFVGLSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~-~dg~v~v~d~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 151 (203)
.+.. +...+..+ |+|+|+.|++.+ .++..++|++... .....+ .+ . . ....|+|+|++|++.+.+ .+.+||
T Consensus 286 ~lt~-~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~-~-~-~~~~~SpDG~~ia~~~~~-~i~~~D 359 (429)
T PRK01742 286 QLTS-GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GG-R-G-YSAQISADGKTLVMINGD-NVVKQD 359 (429)
T ss_pred eecc-CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cC-C-C-CCccCCCCCCEEEEEcCC-CEEEEE
Confidence 5665 56666667 999999877665 5677888876532 222223 33 2 2 457899999999888765 466699
Q ss_pred CCCccc
Q 028802 152 LDDILK 157 (203)
Q Consensus 152 ~~~~~~ 157 (203)
+.++..
T Consensus 360 l~~g~~ 365 (429)
T PRK01742 360 LTSGST 365 (429)
T ss_pred CCCCCe
Confidence 987653
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.7e-13 Score=97.95 Aligned_cols=148 Identities=16% Similarity=0.208 Sum_probs=111.0
Q ss_pred CEEEEEcCCCeEEEEEcC-CCeEEEeecCC--cccEEEEEEeeCCCEEEEec-CCCeEEEEEcCCccc-cceeeecCCCC
Q 028802 8 MKLLGTSGDGTLSVCNLR-KNTVQTRSEFS--EEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKD-CSDRFVGLSPN 82 (203)
Q Consensus 8 ~~l~~~~~d~~i~v~d~~-~~~~~~~~~~~--~~~i~~l~~~~~~~~l~~~~-~d~~i~v~d~~~~~~-~~~~~~~~~~~ 82 (203)
.+|++. ..+.|+||... ..+.+..+... ...+.++.-+....+|+.-+ ..|.|.|-|+..... .-..+.. |..
T Consensus 105 ~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~A-H~s 182 (346)
T KOG2111|consen 105 DRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINA-HDS 182 (346)
T ss_pred CeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEc-ccC
Confidence 344444 34789999988 44555555432 23344444333445566544 579999999974322 2356777 999
Q ss_pred ceeEE-EeeCCCEEEEEcCCCc-EEEEEccCCceeeeeccCCC-cceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028802 83 SVDAL-LKLDEDRVITGSENGL-ISLVGILPNRIIQPIAEHSE-YPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~dg~-v~v~d~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
.|.|+ .+-+|..+++++..|+ |+|||..+|..++.++...+ ..|++|+|+|+..+|++++..|+|+||.++....
T Consensus 183 ~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~ 260 (346)
T KOG2111|consen 183 DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTEN 260 (346)
T ss_pred ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCC
Confidence 99999 8999999999999997 89999999999998875543 3799999999999999999999999999976543
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.6e-14 Score=110.01 Aligned_cols=150 Identities=19% Similarity=0.158 Sum_probs=113.5
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeE------EEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcccccee--eec
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNTV------QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR--FVG 78 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~~------~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~--~~~ 78 (203)
...|+.+..+|.|.++|...-.. +.....|...|..+.|.|....|++++.|.++++||+... .+... +.+
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s-~l~G~~~~~G 142 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS-RLVGGRLNLG 142 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc-eeecceeecc
Confidence 34688999999999999865322 2445679999999999997778999999999999999753 44443 778
Q ss_pred CCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCc--------------------eee-------eeccCCCcceEE-
Q 028802 79 LSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNR--------------------IIQ-------PIAEHSEYPIES- 128 (203)
Q Consensus 79 ~~~~~v~~~-~~~-~~~~l~~~~~dg~v~v~d~~~~~--------------------~~~-------~~~~~~~~~i~~- 128 (203)
|.+.+.++ |.| +...|++|+.||.|.|||++... +.. ...++. ..|.+
T Consensus 143 -H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s-~ti~ss 220 (720)
T KOG0321|consen 143 -HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAAS-NTIFSS 220 (720)
T ss_pred -cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccccc-Cceeee
Confidence 99999999 777 45678899999999999987422 000 011221 14555
Q ss_pred --EEEeCCCCeEEEEeC-CCcEEEEeCCCcccCC
Q 028802 129 --LALSHDRKFLGSISH-DSMLKLWDLDDILKGS 159 (203)
Q Consensus 129 --~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~ 159 (203)
+.+..|...||+++. |+.|+|||++......
T Consensus 221 vTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~ 254 (720)
T KOG0321|consen 221 VTVVLFKDESTLASAGAADSTIKVWDLRKNYTAY 254 (720)
T ss_pred eEEEEEeccceeeeccCCCcceEEEeeccccccc
Confidence 666778889998886 9999999999876554
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.9e-13 Score=98.41 Aligned_cols=146 Identities=14% Similarity=0.168 Sum_probs=110.1
Q ss_pred CCEEEEEcCCCeEEEEEcCC---------CeEEEeecCCcccEEEEEEee--CCCEEEEecCCCeEEEEEcCCcc-----
Q 028802 7 AMKLLGTSGDGTLSVCNLRK---------NTVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFK----- 70 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~---------~~~~~~~~~~~~~i~~l~~~~--~~~~l~~~~~d~~i~v~d~~~~~----- 70 (203)
|+.+|+++.|+++.||.-.. .....++....+.|+.+.|.| -|-.|++++.||.++||+.....
T Consensus 73 GqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W 152 (361)
T KOG2445|consen 73 GQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQW 152 (361)
T ss_pred cceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccc
Confidence 78999999999999997521 123456666788999999999 46788999999999999774210
Q ss_pred -------------------------------------------------------------ccceeeecCCCCceeEE-E
Q 028802 71 -------------------------------------------------------------DCSDRFVGLSPNSVDAL-L 88 (203)
Q Consensus 71 -------------------------------------------------------------~~~~~~~~~~~~~v~~~-~ 88 (203)
..+..+.. +..+|+.+ |
T Consensus 153 ~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d-~~dpI~di~w 231 (361)
T KOG2445|consen 153 TLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD-HTDPIRDISW 231 (361)
T ss_pred hhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC-CCCcceeeee
Confidence 00011123 56788888 8
Q ss_pred eeC----CCEEEEEcCCCcEEEEEccCC--------------------ceeeeeccCCCcceEEEEEeCCCCeEEEEeCC
Q 028802 89 KLD----EDRVITGSENGLISLVGILPN--------------------RIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 89 ~~~----~~~l~~~~~dg~v~v~d~~~~--------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 144 (203)
.|. ...|++++.|| |+||.+... +.+..+..|.. .|+.+.|+-.|..|++.+.|
T Consensus 232 APn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~-~VWrv~wNmtGtiLsStGdD 309 (361)
T KOG2445|consen 232 APNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG-EVWRVRWNMTGTILSSTGDD 309 (361)
T ss_pred ccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC-ceEEEEEeeeeeEEeecCCC
Confidence 774 46789999999 999998731 12344567744 89999999999999999999
Q ss_pred CcEEEEeCCCc
Q 028802 145 SMLKLWDLDDI 155 (203)
Q Consensus 145 ~~i~iwd~~~~ 155 (203)
|.+++|...-.
T Consensus 310 G~VRLWkany~ 320 (361)
T KOG2445|consen 310 GCVRLWKANYN 320 (361)
T ss_pred ceeeehhhhhh
Confidence 99999976433
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.6e-13 Score=102.74 Aligned_cols=150 Identities=14% Similarity=0.267 Sum_probs=100.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcc----------
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK---------- 70 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~---------- 70 (203)
|+|.++|. +++|..+|.|.||+..+.+..+....|.+.|.++....+|.+|- |+.|..|..||-....
T Consensus 252 v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~ 329 (626)
T KOG2106|consen 252 VTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQF 329 (626)
T ss_pred EEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhc
Confidence 46777775 67888889999999887777666668888899988888886655 8888888888742110
Q ss_pred cccee-----------------------------eecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEE------------
Q 028802 71 DCSDR-----------------------------FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVG------------ 108 (203)
Q Consensus 71 ~~~~~-----------------------------~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d------------ 108 (203)
..+++ ..+ |....+.+ .+|+.+.+++++.|+.+++|+
T Consensus 330 G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~g-h~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d 408 (626)
T KOG2106|consen 330 GPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQG-HGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIED 408 (626)
T ss_pred CCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEe-cccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecC
Confidence 00000 012 33334444 456666666666666666665
Q ss_pred --------------------------ccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 109 --------------------------ILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 109 --------------------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
.++...+..-.. ..+++++.|+|+|.+||.|+.|+.|+||-+...
T Consensus 409 ~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d--~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 409 PAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTD--NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN 479 (626)
T ss_pred ceeEeeccCcceEEEeeccceEEEEecccceeEEEEec--CCceEEEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence 333222222222 238999999999999999999999999987543
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.5e-13 Score=106.02 Aligned_cols=154 Identities=17% Similarity=0.099 Sum_probs=102.1
Q ss_pred CcccccCCEEEEEcCC---CeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEE-ecCCCeEEEEEcCCccccceee
Q 028802 1 MTFAADAMKLLGTSGD---GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-~~~d~~i~v~d~~~~~~~~~~~ 76 (203)
.+|||||+.|++.+.. ..|++||+.+++... +......+..++|+|||+.|+. .+.++...+|.+.........+
T Consensus 201 p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l 279 (427)
T PRK02889 201 PAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRL 279 (427)
T ss_pred ceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEEC
Confidence 3699999999887642 469999999886543 3333345668899999998864 5667776666654333345555
Q ss_pred ecCCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEc--cCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCC---cEEE
Q 028802 77 VGLSPNSVDAL-LKLDEDRVITGSE-NGLISLVGI--LPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS---MLKL 149 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~-dg~v~v~d~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~i~i 149 (203)
.. +....... |+|+|+.|+..+. .+...+|.+ .++.... +..... ......|+|+|++|+..+.++ .|.+
T Consensus 280 t~-~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~-~~~~~~~SpDG~~Ia~~s~~~g~~~I~v 356 (427)
T PRK02889 280 TQ-SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGS-YNTSPRISPDGKLLAYISRVGGAFKLYV 356 (427)
T ss_pred CC-CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCC-CcCceEECCCCCEEEEEEccCCcEEEEE
Confidence 54 44444555 9999999887654 455555554 4444322 222212 344678999999998776543 6999
Q ss_pred EeCCCcccC
Q 028802 150 WDLDDILKG 158 (203)
Q Consensus 150 wd~~~~~~~ 158 (203)
||+.++...
T Consensus 357 ~d~~~g~~~ 365 (427)
T PRK02889 357 QDLATGQVT 365 (427)
T ss_pred EECCCCCeE
Confidence 999876543
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.2e-14 Score=108.57 Aligned_cols=127 Identities=17% Similarity=0.229 Sum_probs=94.7
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCC
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 81 (203)
.|+|+|.-|++++.||.|++|. ++|-+..++.....+|.|++|.|+.+.++.+.. +.+.+=.+... ..+-.... |.
T Consensus 111 RW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n-~k~i~WkA-HD 186 (737)
T KOG1524|consen 111 RWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLAAN-SKIIRWRA-HD 186 (737)
T ss_pred ccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecC-CeEEEeecccc-cceeEEec-cC
Confidence 5999999999999999999999 445455555556788999999999887776543 55666666532 33445677 99
Q ss_pred CceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCC
Q 028802 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHD 134 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~ 134 (203)
+-|.++ |++..++|++|+.|-..++||.. |..+..-..| +.+|++++|+|+
T Consensus 187 GiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~-ey~ITSva~npd 238 (737)
T KOG1524|consen 187 GLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAE-EYAITSVAFNPE 238 (737)
T ss_pred cEEEEeecCccccceeecCCceeEEeeccc-CcccccCChh-ccceeeeeeccc
Confidence 999999 99999999999999999999954 4444444444 224444444444
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.8e-15 Score=119.98 Aligned_cols=154 Identities=9% Similarity=0.123 Sum_probs=126.4
Q ss_pred CcccccC-CEEEEEcCCCeEEEEEcCCCeEEEeecCCc--ccEEEEEEeeCC-CEEEEecCC---CeEEEEEcCCccccc
Q 028802 1 MTFAADA-MKLLGTSGDGTLSVCNLRKNTVQTRSEFSE--EELTSVVLMKNG-RKVVCGSQS---GTVLLYSWGYFKDCS 73 (203)
Q Consensus 1 l~~sp~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~--~~i~~l~~~~~~-~~l~~~~~d---~~i~v~d~~~~~~~~ 73 (203)
|+|+..- ..|++++.+|.+.|||++..+.+..+..+. ..+..++|+|+. ..|++++.| -.|.+||++.....+
T Consensus 167 lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~ 246 (1049)
T KOG0307|consen 167 LSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPL 246 (1049)
T ss_pred eccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCch
Confidence 3566544 357888999999999999887766665443 357889999976 556666654 479999999877888
Q ss_pred eeeecCCCCceeEE-EeeCC-CEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCC-eEEEEeCCCcEEEE
Q 028802 74 DRFVGLSPNSVDAL-LKLDE-DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSISHDSMLKLW 150 (203)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~~~-~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iw 150 (203)
+.+.+ |...|.++ |++.+ .++++++.|+.|.+|+.++++.+..+.... .++..+.|.|... .++.++.||.|.||
T Consensus 247 k~~~~-H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~-nW~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 247 KILEG-HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQG-NWCFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred hhhcc-cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCC-cceeeeeecCCCcchhhhheeccceeee
Confidence 99999 99999999 87755 888999999999999999999999998764 4899999999775 67888899999999
Q ss_pred eCCCcc
Q 028802 151 DLDDIL 156 (203)
Q Consensus 151 d~~~~~ 156 (203)
.+.+..
T Consensus 325 sl~~~~ 330 (1049)
T KOG0307|consen 325 SLQGTD 330 (1049)
T ss_pred eeecCC
Confidence 987765
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.6e-13 Score=100.74 Aligned_cols=68 Identities=15% Similarity=0.174 Sum_probs=59.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcC--------C--------CeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEE
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLR--------K--------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLY 64 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~--------~--------~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~ 64 (203)
+.|+|+|..||+|+.+|.|.+|-.. + ......+.+|...|..++|+|+++++++++.|+.+++|
T Consensus 71 vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~ 150 (434)
T KOG1009|consen 71 VRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLW 150 (434)
T ss_pred EEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEE
Confidence 4699999999999999999999865 2 12345667899999999999999999999999999999
Q ss_pred EcCC
Q 028802 65 SWGY 68 (203)
Q Consensus 65 d~~~ 68 (203)
|+..
T Consensus 151 Dv~~ 154 (434)
T KOG1009|consen 151 DVHA 154 (434)
T ss_pred Eecc
Confidence 9974
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-13 Score=112.92 Aligned_cols=154 Identities=21% Similarity=0.173 Sum_probs=129.6
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCC
Q 028802 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 82 (203)
++++.-++++|+--+.|.+|.....+....+.+|.+.|.++.|+-+|+++++.+.|.++++|++.+.........+ |..
T Consensus 141 ~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fg-Hsa 219 (967)
T KOG0974|consen 141 DSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFG-HSA 219 (967)
T ss_pred ccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccc-ccc
Confidence 4556667888988999999998744333468899999999999999999999999999999999865444446677 999
Q ss_pred ceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028802 83 SVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
.++.+ +.|. .+++++.|.+.++|+.. +..+..+..|....|..++..++...+++++.|+.+++|++.+...+..
T Consensus 220 Rvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e~~ 295 (967)
T KOG0974|consen 220 RVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLEGH 295 (967)
T ss_pred eeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccccccc
Confidence 99888 8887 99999999999999754 6677788888766899999999999999999999999999987765543
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.6e-14 Score=109.23 Aligned_cols=154 Identities=18% Similarity=0.216 Sum_probs=116.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEee-cCCcccEEEEEEee--CCCEEEEecCCCeEEEEEcCCc--------
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRS-EFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYF-------- 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~i~~l~~~~--~~~~l~~~~~d~~i~v~d~~~~-------- 69 (203)
|.|+.+|.+|++|+.|-.+.|||....+++..+ ++|...|.++.|-| +.+.+++|..|..|++||+...
T Consensus 56 LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~ 135 (758)
T KOG1310|consen 56 LEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHG 135 (758)
T ss_pred eeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccC
Confidence 579999999999999999999999877777666 68999999999999 4568889999999999999631
Q ss_pred -cccceeeecCCCCceeEE-EeeCC-CEEEEEcCCCcEEEEEccCCc-------eeeeec-cCC-CcceEEEEEeCCC-C
Q 028802 70 -KDCSDRFVGLSPNSVDAL-LKLDE-DRVITGSENGLISLVGILPNR-------IIQPIA-EHS-EYPIESLALSHDR-K 136 (203)
Q Consensus 70 -~~~~~~~~~~~~~~v~~~-~~~~~-~~l~~~~~dg~v~v~d~~~~~-------~~~~~~-~~~-~~~i~~~~~~~~~-~ 136 (203)
......+.. |...|..+ -.|.+ +.+.++++||+|+-||++... +...+. .+. .-...++.++|.. .
T Consensus 136 ~~~~~~~~~c-ht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~ 214 (758)
T KOG1310|consen 136 MEETTRCWSC-HTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPY 214 (758)
T ss_pred ccchhhhhhh-hhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCc
Confidence 122233445 66666666 46766 788899999999999998521 111111 111 1146788999966 5
Q ss_pred eEEEEeCCCcEEEEeCCCc
Q 028802 137 FLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 137 ~l~~~~~d~~i~iwd~~~~ 155 (203)
+|++|+.|--.++||.+..
T Consensus 215 ~laVGgsdpfarLYD~Rr~ 233 (758)
T KOG1310|consen 215 YLAVGGSDPFARLYDRRRV 233 (758)
T ss_pred eEEecCCCchhhhhhhhhh
Confidence 6889999999999995443
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.1e-13 Score=105.87 Aligned_cols=150 Identities=15% Similarity=0.197 Sum_probs=106.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCC--EEEEecCC--------------------
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR--KVVCGSQS-------------------- 58 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~--~l~~~~~d-------------------- 58 (203)
|+..|.|..|++|+.||+|+||.+.++.++.++.. .+.|.+++|+|.+. .|+++...
T Consensus 406 iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~e 484 (733)
T KOG0650|consen 406 ISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKE 484 (733)
T ss_pred EEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhh
Confidence 35678899999999999999999999999887764 34577777777543 22222111
Q ss_pred -------------------------------------------------------------CeEEEEEcCCccccceeee
Q 028802 59 -------------------------------------------------------------GTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 59 -------------------------------------------------------------~~i~v~d~~~~~~~~~~~~ 77 (203)
..|.|+++.. ......|.
T Consensus 485 ll~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK-~~sQ~PF~ 563 (733)
T KOG0650|consen 485 LLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK-RKSQSPFR 563 (733)
T ss_pred hhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccc-ccccCchh
Confidence 1122222211 11111222
Q ss_pred cCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
. ..+.+.++ |+|...++++++. ..|++||+..+..+..+..... .|..++.+|.|..|+.++.|+.+..||+.-.
T Consensus 564 k-skG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~k-wiS~msihp~GDnli~gs~d~k~~WfDldls 639 (733)
T KOG0650|consen 564 K-SKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSK-WISSMSIHPNGDNLILGSYDKKMCWFDLDLS 639 (733)
T ss_pred h-cCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCe-eeeeeeecCCCCeEEEecCCCeeEEEEcccC
Confidence 2 34556677 9999998888776 4699999988777766655534 7999999999999999999999999998655
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=9e-14 Score=106.60 Aligned_cols=150 Identities=13% Similarity=0.221 Sum_probs=108.5
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEee----cCCcccEEEEEEeeCC-CEEEEecCCCeEEEEEcCCcc---------
Q 028802 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRS----EFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFK--------- 70 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~v~d~~~~~~~~~~----~~~~~~i~~l~~~~~~-~~l~~~~~d~~i~v~d~~~~~--------- 70 (203)
|.+--|++|-.-|.|.+.|....+....+ ......++++.|-|.+ ..++++-.+|.+++||.....
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 34555677777788888886542221111 1234789999999954 566677789999999874211
Q ss_pred ------------------ccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEE
Q 028802 71 ------------------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLAL 131 (203)
Q Consensus 71 ------------------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~ 131 (203)
.++..+.- ....|... |+|||++|++.+.||.++|+|..+.+.+..+...-+ ...|++|
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~-~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFG-GLLCvcW 340 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHI-GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFG-GLLCVCW 340 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEe-ccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhcc-ceEEEEE
Confidence 00111111 23456666 899999999999999999999998777766665534 7899999
Q ss_pred eCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 132 SHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 132 ~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+|||+||++|+.|..|.||.+....
T Consensus 341 SPDGKyIvtGGEDDLVtVwSf~erR 365 (636)
T KOG2394|consen 341 SPDGKYIVTGGEDDLVTVWSFEERR 365 (636)
T ss_pred cCCccEEEecCCcceEEEEEeccce
Confidence 9999999999999999999987765
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.9e-13 Score=100.60 Aligned_cols=155 Identities=13% Similarity=0.052 Sum_probs=120.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC------CeEEEeec-CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccc
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRK------NTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS 73 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~------~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 73 (203)
|.||.++++|++|+.|..+++|.+.. .+++.... .|.+.|.+++|....++|++|..+++|...|+.+. +.+
T Consensus 62 lqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~-qsi 140 (609)
T KOG4227|consen 62 LQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETK-QSI 140 (609)
T ss_pred eeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccc-eee
Confidence 46899999999999999999999853 35555554 45689999999999999999999999999999853 444
Q ss_pred eeeec-CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc-eee-eeccCCCcceEEEEEeCCC-CeEEEEeCCCcEE
Q 028802 74 DRFVG-LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR-IIQ-PIAEHSEYPIESLALSHDR-KFLGSISHDSMLK 148 (203)
Q Consensus 74 ~~~~~-~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~-~~~-~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~ 148 (203)
..+.. ...+.|+.+ .+|..+.+++.+.++.|.+||.+..+ .+. .+.+......+.+.|+|.. ..|++.+..+-+-
T Consensus 141 ~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~ 220 (609)
T KOG4227|consen 141 YVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPN 220 (609)
T ss_pred eeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCC
Confidence 44332 033578888 89999999999999999999998654 221 1222223368899999966 5677888888999
Q ss_pred EEeCCCcc
Q 028802 149 LWDLDDIL 156 (203)
Q Consensus 149 iwd~~~~~ 156 (203)
+||++...
T Consensus 221 ~~D~R~~~ 228 (609)
T KOG4227|consen 221 VFDRRMQA 228 (609)
T ss_pred ceeecccc
Confidence 99987653
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.7e-13 Score=106.72 Aligned_cols=144 Identities=16% Similarity=0.136 Sum_probs=101.7
Q ss_pred CcccccCCEEEEEc-CCCeEE--EEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEec-CCCeEEEEEcCCccccceee
Q 028802 1 MTFAADAMKLLGTS-GDGTLS--VCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~-~d~~i~--v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~ 76 (203)
++|+|||+.|+++. .+|.+. +||+.++.. ..+..+...+..+.|+|+|+.|+.++ .++...+|++...+.....+
T Consensus 253 ~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 253 PAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV 331 (429)
T ss_pred eeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence 47999999888764 577655 556666554 44555666788899999999877554 57888888875433333333
Q ss_pred ecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
. +.. ..+ |+|+|+.|++.+.++ +.+||+.+++........ ....+.|+|+|++|++++.++.+.+|.+.
T Consensus 332 -~-~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~---~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 332 -G-GRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF---LDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred -c-CCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC---CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 3 333 345 899999999887765 566999888765332222 24567899999999999988888888763
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.4e-14 Score=111.12 Aligned_cols=143 Identities=13% Similarity=0.171 Sum_probs=115.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
++|-|||..|+.+.. ..+.+||...|..+.++++|...|.+++|+.+|..+++|+.|..|.+|.-...+. + -.+ |
T Consensus 18 ~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-L--kYS-H 92 (1081)
T KOG1538|consen 18 IAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-L--KYS-H 92 (1081)
T ss_pred eEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce-e--eec-c
Confidence 578999998877654 5799999999999999999999999999999999999999999999998654322 1 134 8
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
...|.|+ |+|-...+++++.. ..-+|..... .+...+.. .+|.+.+|..||++++.|-.+|+|.+-+-
T Consensus 93 ~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK-~V~K~kss--~R~~~CsWtnDGqylalG~~nGTIsiRNk 161 (1081)
T KOG1538|consen 93 NDAIQCMSFNPITHQLASCSLS-DFGLWSPEQK-SVSKHKSS--SRIICCSWTNDGQYLALGMFNGTISIRNK 161 (1081)
T ss_pred CCeeeEeecCchHHHhhhcchh-hccccChhhh-hHHhhhhh--eeEEEeeecCCCcEEEEeccCceEEeecC
Confidence 8999999 99999999888764 3457876543 22222222 37889999999999999999999998754
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.5e-12 Score=93.89 Aligned_cols=153 Identities=14% Similarity=0.084 Sum_probs=111.4
Q ss_pred ccccc--CCEEEEEc--CCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCe-EEEEEcCCccccceee
Q 028802 2 TFAAD--AMKLLGTS--GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT-VLLYSWGYFKDCSDRF 76 (203)
Q Consensus 2 ~~sp~--~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~-i~v~d~~~~~~~~~~~ 76 (203)
++||+ +.+|+.-+ ..|.|.+||+.+-+.+..+..|.+.+.+++|+++|.+|++++..|+ |+||.+.. ++.+..|
T Consensus 134 AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~-G~kl~eF 212 (391)
T KOG2110|consen 134 ALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE-GQKLYEF 212 (391)
T ss_pred eeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC-ccEeeee
Confidence 44554 34777643 3689999999999999999999999999999999999999999886 78999975 5666666
Q ss_pred ec-CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCce-------------------------------------eee
Q 028802 77 VG-LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI-------------------------------------IQP 117 (203)
Q Consensus 77 ~~-~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~-------------------------------------~~~ 117 (203)
.. .....|.++ |+|++.+|.+.+..++|+++-+..... ..+
T Consensus 213 RRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt 292 (391)
T KOG2110|consen 213 RRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFAT 292 (391)
T ss_pred eCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeE
Confidence 53 123457778 999999999999999999998753110 000
Q ss_pred eccCCCcce-EEEEEe--CCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 118 IAEHSEYPI-ESLALS--HDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 118 ~~~~~~~~i-~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
.... .... ..+.+. +...++..++.||.++.|.+....
T Consensus 293 ~~l~-~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~ 333 (391)
T KOG2110|consen 293 AKLP-ESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPKE 333 (391)
T ss_pred EEcc-CCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCCC
Confidence 0000 0011 223344 466888899999999999987653
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.1e-13 Score=106.26 Aligned_cols=143 Identities=20% Similarity=0.293 Sum_probs=123.9
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE
Q 028802 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL 87 (203)
Q Consensus 8 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~ 87 (203)
+.++.|+..|.+.+|++++++.+.++..+...|+++.=+|--..++.|..+|+|.+++++. .+.+..|.. ..+.|+.+
T Consensus 173 NKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~-dkil~sFk~-d~g~Vtsl 250 (910)
T KOG1539|consen 173 NKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKF-DKILMSFKQ-DWGRVTSL 250 (910)
T ss_pred eeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEccc-CcEEEEEEc-cccceeEE
Confidence 5678999999999999999999999999999999999888888999999999999999985 577888885 46999999
Q ss_pred -EeeCCCEE-EEEcCCCcEEEEEccCCceeeeec-cCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 88 -LKLDEDRV-ITGSENGLISLVGILPNRIIQPIA-EHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 88 -~~~~~~~l-~~~~~dg~v~v~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
|..||+.+ ++|+..|.+.+||++..+.+..+. .|.+ .|....|-|....+++++.|..+++|=.+
T Consensus 251 SFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~-sv~~~~fl~~epVl~ta~~DnSlk~~vfD 318 (910)
T KOG1539|consen 251 SFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYG-SVTGATFLPGEPVLVTAGADNSLKVWVFD 318 (910)
T ss_pred EeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccC-CcccceecCCCceEeeccCCCceeEEEee
Confidence 98888655 556667999999999887776665 6644 78999999999999999999998888655
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-13 Score=104.17 Aligned_cols=131 Identities=9% Similarity=0.158 Sum_probs=107.1
Q ss_pred CcccccCCE-EEEEcCCCeEEEEEcCCCeEEEee-cCCcccEEEEEEeeCC-CEEEEecCCCeEEEEEcCCccccceeee
Q 028802 1 MTFAADAMK-LLGTSGDGTLSVCNLRKNTVQTRS-EFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~~-l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~i~~l~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 77 (203)
|.|||..++ |.+++.+|.|.+||+....++... ..|..+...|+|+|.. .+|++.+.|..|++||++. ......+.
T Consensus 170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s-~~s~~~l~ 248 (673)
T KOG4378|consen 170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS-QASTDRLT 248 (673)
T ss_pred eecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc-ccccceee
Confidence 457787765 567889999999999876655444 6789999999999955 5677889999999999974 44455555
Q ss_pred cCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC-CceeeeeccCCCcceEEEEEeCCC
Q 028802 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDR 135 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~ 135 (203)
...+...+ |.++|.+|+.|+..|.|..||++. ..++.++..|.. .|++++|-|..
T Consensus 249 --y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~-sVt~vafq~s~ 305 (673)
T KOG4378|consen 249 --YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA-SVTRVAFQPSP 305 (673)
T ss_pred --ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccc-ceeEEEeeecc
Confidence 46788888 999999999999999999999985 467888889955 79999998875
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.1e-12 Score=99.73 Aligned_cols=150 Identities=26% Similarity=0.439 Sum_probs=123.1
Q ss_pred cccCC-EEEEEcC-CCeEEEEEcCC-CeEEEeecCCcccEEEEEEeeCCCEEEEecC-CCeEEEEEcCCccccceeeecC
Q 028802 4 AADAM-KLLGTSG-DGTLSVCNLRK-NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 4 sp~~~-~l~~~~~-d~~i~v~d~~~-~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
++++. .++..+. ++.+.+|+... ......+..|...|..++|+|++..+++++. ++.+++|++.. ...+..+..
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~- 196 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT-GKPLSTLAG- 196 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC-CceEEeecc-
Confidence 56666 4444444 89999999998 7778888899999999999999998888885 99999999975 466777787
Q ss_pred CCCceeEE-EeeCCC-EEEEEcCCCcEEEEEccCCceee-eeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 80 SPNSVDAL-LKLDED-RVITGSENGLISLVGILPNRIIQ-PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~-~l~~~~~dg~v~v~d~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
|...+.++ ++|++. .+++++.++.|++||...+..+. .+..|.. .. ...|+|++.++++++.|+.+++|++....
T Consensus 197 ~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 274 (466)
T COG2319 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD-SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSS 274 (466)
T ss_pred CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCc-ce-eEeECCCCCEEEEecCCCcEEEeeecCCC
Confidence 88999999 899998 55555899999999988777777 6777754 33 33899999888899999999999998766
Q ss_pred c
Q 028802 157 K 157 (203)
Q Consensus 157 ~ 157 (203)
.
T Consensus 275 ~ 275 (466)
T COG2319 275 S 275 (466)
T ss_pred c
Confidence 4
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-12 Score=98.58 Aligned_cols=151 Identities=11% Similarity=0.122 Sum_probs=103.8
Q ss_pred CcccccCCEEEEEc-CCCeEEEEEcC-CCeE--EEeecCCcccEEEEEEeeCCCEEEEecC-CCeEEEEEcCCccccc--
Q 028802 1 MTFAADAMKLLGTS-GDGTLSVCNLR-KNTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCS-- 73 (203)
Q Consensus 1 l~~sp~~~~l~~~~-~d~~i~v~d~~-~~~~--~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~-- 73 (203)
|+++|++++|++++ .++.|.+|++. ++.. +.... .......++++|++++|++++. ++.|.+|++...+...
T Consensus 40 l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~ 118 (330)
T PRK11028 40 MVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAP 118 (330)
T ss_pred EEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCc
Confidence 47899999887664 57889999986 3332 22232 2234678999999999888764 7899999996433222
Q ss_pred -eeeecCCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCceee-----eeccCCCcceEEEEEeCCCCeEEEEeC-C
Q 028802 74 -DRFVGLSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILPNRIIQ-----PIAEHSEYPIESLALSHDRKFLGSISH-D 144 (203)
Q Consensus 74 -~~~~~~~~~~v~~~-~~~~~~~l~~~~~-dg~v~v~d~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~-d 144 (203)
..+.. ......+ ++|+++++++++. ++.|.+||+.+...+. ......+.....++|+|+|++++++.. +
T Consensus 119 ~~~~~~--~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~ 196 (330)
T PRK11028 119 IQIIEG--LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELN 196 (330)
T ss_pred eeeccC--CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCC
Confidence 22222 2234455 8999999876654 6899999997633221 111111224678999999999988775 8
Q ss_pred CcEEEEeCCC
Q 028802 145 SMLKLWDLDD 154 (203)
Q Consensus 145 ~~i~iwd~~~ 154 (203)
+.|.+|++..
T Consensus 197 ~~v~v~~~~~ 206 (330)
T PRK11028 197 SSVDVWQLKD 206 (330)
T ss_pred CEEEEEEEeC
Confidence 9999999973
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-12 Score=103.18 Aligned_cols=150 Identities=13% Similarity=0.083 Sum_probs=104.2
Q ss_pred CcccccCCEEEEEcC---CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEE-EecCCCe--EEEEEcCCccccce
Q 028802 1 MTFAADAMKLLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGT--VLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~-~~~~d~~--i~v~d~~~~~~~~~ 74 (203)
.+|||||+.|+..+. +..|++|++.++... .+......+...+|+|+|+.|+ +.+.++. |++||+.. ....
T Consensus 207 p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~--~~~~ 283 (435)
T PRK05137 207 PRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS--GTTT 283 (435)
T ss_pred eEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCC--CceE
Confidence 369999999888753 468999999887653 3444556677899999998876 4455554 77778753 3345
Q ss_pred eeecCCCCceeEE-EeeCCCEEEEEcC-CC--cEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCC---CcE
Q 028802 75 RFVGLSPNSVDAL-LKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD---SML 147 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~-dg--~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i 147 (203)
.+.. +....... |+|+|+.|+..+. .| .|+++|+..+... .+..+.. .+....|+|+|++|+....+ ..|
T Consensus 284 ~Lt~-~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~-~~~~~~~SpdG~~ia~~~~~~~~~~i 360 (435)
T PRK05137 284 RLTD-SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGG-RYSTPVWSPRGDLIAFTKQGGGQFSI 360 (435)
T ss_pred EccC-CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCC-cccCeEECCCCCEEEEEEcCCCceEE
Confidence 5655 55555556 9999999887764 33 5888888765544 3333322 46678899999999876643 368
Q ss_pred EEEeCCCcc
Q 028802 148 KLWDLDDIL 156 (203)
Q Consensus 148 ~iwd~~~~~ 156 (203)
.+|++.+..
T Consensus 361 ~~~d~~~~~ 369 (435)
T PRK05137 361 GVMKPDGSG 369 (435)
T ss_pred EEEECCCCc
Confidence 888876543
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.7e-12 Score=89.92 Aligned_cols=148 Identities=16% Similarity=0.209 Sum_probs=111.1
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCC
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 81 (203)
-..|..+-++.++.|+.++-||+++|+..+.+++|...|.++.--.....+++|+.||++++||+++ ++.++.+.. ..
T Consensus 121 ~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt-~k~v~~ie~-yk 198 (325)
T KOG0649|consen 121 WLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKT-QKHVSMIEP-YK 198 (325)
T ss_pred EeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccc-cceeEEecc-cc
Confidence 3467777788888999999999999999999999999999998755666889999999999999986 455555543 21
Q ss_pred C----------ceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028802 82 N----------SVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 82 ~----------~v~~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 151 (203)
. .|.++ .-+..++++|+. -.+.+|++++.++..++.-. . ++..+.|..+ .+++++..+++.-|.
T Consensus 199 ~~~~lRp~~g~wigal-a~~edWlvCGgG-p~lslwhLrsse~t~vfpip-a-~v~~v~F~~d--~vl~~G~g~~v~~~~ 272 (325)
T KOG0649|consen 199 NPNLLRPDWGKWIGAL-AVNEDWLVCGGG-PKLSLWHLRSSESTCVFPIP-A-RVHLVDFVDD--CVLIGGEGNHVQSYT 272 (325)
T ss_pred ChhhcCcccCceeEEE-eccCceEEecCC-CceeEEeccCCCceEEEecc-c-ceeEeeeecc--eEEEeccccceeeee
Confidence 1 12222 334556666554 46899999998888777655 2 6788888544 677777778888888
Q ss_pred CCCccc
Q 028802 152 LDDILK 157 (203)
Q Consensus 152 ~~~~~~ 157 (203)
+..-.+
T Consensus 273 l~Gvl~ 278 (325)
T KOG0649|consen 273 LNGVLQ 278 (325)
T ss_pred eccEEE
Confidence 765443
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-12 Score=99.20 Aligned_cols=149 Identities=11% Similarity=0.172 Sum_probs=101.2
Q ss_pred CcccccCCEEEEE-cCCCeEEEEEcCCCeEEE-------eecCCcccEEEEEEeeCCCEEEEecC-CCeEEEEEcCCc-c
Q 028802 1 MTFAADAMKLLGT-SGDGTLSVCNLRKNTVQT-------RSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYF-K 70 (203)
Q Consensus 1 l~~sp~~~~l~~~-~~d~~i~v~d~~~~~~~~-------~~~~~~~~i~~l~~~~~~~~l~~~~~-d~~i~v~d~~~~-~ 70 (203)
++++|++++++++ ..++.|.+|++.+...+. .+. .......++|+|++++++++.. ++.|.+|++... +
T Consensus 131 ~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~ 209 (330)
T PRK11028 131 ANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHG 209 (330)
T ss_pred eEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCC
Confidence 3689999988654 457999999997632221 111 1344678999999999988876 899999999632 1
Q ss_pred --ccceeeecCC------CCceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCc----eeeeeccCCCcceEEEEEeCCCC
Q 028802 71 --DCSDRFVGLS------PNSVDAL-LKLDEDRVITGSE-NGLISLVGILPNR----IIQPIAEHSEYPIESLALSHDRK 136 (203)
Q Consensus 71 --~~~~~~~~~~------~~~v~~~-~~~~~~~l~~~~~-dg~v~v~d~~~~~----~~~~~~~~~~~~i~~~~~~~~~~ 136 (203)
..+..+.. . ......+ ++|++++++++.. ++.|.+|++.... .+..+... .....+.++|+|+
T Consensus 210 ~~~~~~~~~~-~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~--~~p~~~~~~~dg~ 286 (330)
T PRK11028 210 EIECVQTLDM-MPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE--TQPRGFNIDHSGK 286 (330)
T ss_pred CEEEEEEEec-CCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc--ccCCceEECCCCC
Confidence 11222221 1 1112245 8999999999865 6889999986533 22222221 1356789999999
Q ss_pred eEEEEe-CCCcEEEEeCC
Q 028802 137 FLGSIS-HDSMLKLWDLD 153 (203)
Q Consensus 137 ~l~~~~-~d~~i~iwd~~ 153 (203)
+|+++. .+++|.+|++.
T Consensus 287 ~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 287 YLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEEEEccCCcEEEEEEc
Confidence 998777 48999999874
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.3e-12 Score=101.37 Aligned_cols=151 Identities=16% Similarity=0.154 Sum_probs=100.5
Q ss_pred CcccccCCEEEEE-cCCC--eEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC-CCeEEEEEcCCccccceee
Q 028802 1 MTFAADAMKLLGT-SGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~-~~d~--~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~ 76 (203)
++|||||+.|+.. +.++ .|++||+.++.... +..+...+....|+|+|+.|+..+. .+...+|.+...+.....+
T Consensus 248 ~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~l 326 (429)
T PRK03629 248 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRI 326 (429)
T ss_pred eEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEe
Confidence 3699999988765 3344 59999998876544 4444456788999999998877665 3444555332222233444
Q ss_pred ecCCCCceeEE-EeeCCCEEEEEcCC---CcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCc---EEE
Q 028802 77 VGLSPNSVDAL-LKLDEDRVITGSEN---GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSM---LKL 149 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d---g~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~---i~i 149 (203)
.. ........ |+|+|++|+..+.+ ..|.+||+.++... .+... . ......|+|||++|+.++.++. +.+
T Consensus 327 t~-~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~-~~~~p~~SpDG~~i~~~s~~~~~~~l~~ 402 (429)
T PRK03629 327 TW-EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-F-LDETPSIAPNGTMVIYSSSQGMGSVLNL 402 (429)
T ss_pred ec-CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-C-CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 43 33344455 89999999876643 35888999887654 33322 1 2456789999999998887654 677
Q ss_pred EeCCCcc
Q 028802 150 WDLDDIL 156 (203)
Q Consensus 150 wd~~~~~ 156 (203)
+++....
T Consensus 403 ~~~~G~~ 409 (429)
T PRK03629 403 VSTDGRF 409 (429)
T ss_pred EECCCCC
Confidence 7775443
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.2e-13 Score=100.16 Aligned_cols=154 Identities=14% Similarity=0.117 Sum_probs=116.0
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeE-EEeecCCcccEEEEEEeeC-CCEEEEecCCCeEEEEEcCCcccc---ceee
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTV-QTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDC---SDRF 76 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~i~~l~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~---~~~~ 76 (203)
.|+.+...++.+..=|...+||.+++.. ...+.-|...|.+++++|- ..+|++++.|++++|||++..... .-..
T Consensus 286 d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst 365 (498)
T KOG4328|consen 286 DFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLST 365 (498)
T ss_pred cccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceec
Confidence 4566666777777767999999997644 5667778889999999994 467899999999999999853211 1122
Q ss_pred ecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEcc----CCceeeeeccCC--Cc--ceEEEEEeCCCCeEEEEeCCCcE
Q 028802 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL----PNRIIQPIAEHS--EY--PIESLALSHDRKFLGSISHDSML 147 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~----~~~~~~~~~~~~--~~--~i~~~~~~~~~~~l~~~~~d~~i 147 (203)
.. |...|.+. |+|.+..|++-+.|..|+|||.. ...++.++.... +. ......|.|+..+++++..-..|
T Consensus 366 ~~-HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~I 444 (498)
T KOG4328|consen 366 LP-HRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPI 444 (498)
T ss_pred cc-ccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcce
Confidence 34 78889999 99998889999999999999973 223333332111 11 23456899999999999999999
Q ss_pred EEEeCCCcc
Q 028802 148 KLWDLDDIL 156 (203)
Q Consensus 148 ~iwd~~~~~ 156 (203)
-|||-..++
T Consensus 445 Dv~~~~~~q 453 (498)
T KOG4328|consen 445 DVFDGNGGQ 453 (498)
T ss_pred eEEcCCCCE
Confidence 999987776
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.4e-12 Score=99.84 Aligned_cols=151 Identities=16% Similarity=0.148 Sum_probs=100.6
Q ss_pred CcccccCCEEEEEc---CCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEe-cCCC--eEEEEEcCCccccce
Q 028802 1 MTFAADAMKLLGTS---GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSG--TVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~d~--~i~v~d~~~~~~~~~ 74 (203)
.+|||||+.|+..+ .+..|++|++.+++... +......+..+.|+|||+.|+.. +.++ .|++||+.. +. ..
T Consensus 204 p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t-g~-~~ 280 (429)
T PRK03629 204 PAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS-GQ-IR 280 (429)
T ss_pred eEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC-CC-EE
Confidence 36999999988754 34579999998875432 22223335568999999988765 3344 588889864 23 34
Q ss_pred eeecCCCCceeEE-EeeCCCEEEEEcCC-C--cEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCC---CcE
Q 028802 75 RFVGLSPNSVDAL-LKLDEDRVITGSEN-G--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD---SML 147 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d-g--~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i 147 (203)
.+.. ....+... |+|+|+.|+..+.. + .|+++++.++... .+..... ......|+|||++|+..+.+ ..|
T Consensus 281 ~lt~-~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~-~~~~~~~SpDG~~Ia~~~~~~g~~~I 357 (429)
T PRK03629 281 QVTD-GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGS-QNQDADVSSDGKFMVMVSSNGGQQHI 357 (429)
T ss_pred EccC-CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCC-CccCEEECCCCCEEEEEEccCCCceE
Confidence 4444 44455566 99999998877654 4 4555566665543 3333322 45678999999999876643 358
Q ss_pred EEEeCCCccc
Q 028802 148 KLWDLDDILK 157 (203)
Q Consensus 148 ~iwd~~~~~~ 157 (203)
.+||+.++..
T Consensus 358 ~~~dl~~g~~ 367 (429)
T PRK03629 358 AKQDLATGGV 367 (429)
T ss_pred EEEECCCCCe
Confidence 8999887653
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.2e-13 Score=104.92 Aligned_cols=124 Identities=12% Similarity=0.169 Sum_probs=102.6
Q ss_pred EEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce-eeecCCCCceeEE-Eee--CCCEEEEEcCCCcEE
Q 028802 30 QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD-RFVGLSPNSVDAL-LKL--DEDRVITGSENGLIS 105 (203)
Q Consensus 30 ~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~v~~~-~~~--~~~~l~~~~~dg~v~ 105 (203)
...+.+|.+.|.++.|+.+|.+|++|+.|-.+.|||... .+.+. .-++ |...|.++ |-| ....+++|..|..|+
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~-~KllhsI~Tg-HtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFE-YKLLHSISTG-HTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchh-cceeeeeecc-cccceeEEeeeccCCCeEEEeccCcceEE
Confidence 356789999999999999999999999999999999874 34444 4467 99999999 866 567888999999999
Q ss_pred EEEccC----------CceeeeeccCCCcceEEEEEeCCC-CeEEEEeCCCcEEEEeCCCcc
Q 028802 106 LVGILP----------NRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 106 v~d~~~----------~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~ 156 (203)
++|+.. ...+..+..|.. .|..++-.|++ ..+.+++.||+|+-+|++...
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~-rVKria~~p~~PhtfwsasEDGtirQyDiREph 181 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTD-RVKRIATAPNGPHTFWSASEDGTIRQYDIREPH 181 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhh-hhhheecCCCCCceEEEecCCcceeeecccCCc
Confidence 999974 123455667755 78889999998 678899999999999998753
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=6e-12 Score=99.29 Aligned_cols=152 Identities=14% Similarity=0.096 Sum_probs=102.6
Q ss_pred CcccccCCEEEEEcC---CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEE-ecCCC--eEEEEEcCCccccce
Q 028802 1 MTFAADAMKLLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSG--TVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-~~~d~--~i~v~d~~~~~~~~~ 74 (203)
.+|+|||+.|++.+. ...|++|++.+++... +.........+.|+|+|+.|+. .+.++ .|++||+.. +. +.
T Consensus 209 p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~-g~-~~ 285 (433)
T PRK04922 209 PAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGS-RQ-LT 285 (433)
T ss_pred ccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCC-CC-eE
Confidence 369999999988764 3479999998876532 3333444557899999997764 44444 588999864 23 34
Q ss_pred eeecCCCCceeEE-EeeCCCEEEEEcC-CCc--EEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCC---cE
Q 028802 75 RFVGLSPNSVDAL-LKLDEDRVITGSE-NGL--ISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS---ML 147 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~-dg~--v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~i 147 (203)
.+.. +......+ |+|+|+.|++.+. .|. |+++++.+++... +..+.. ....++|+|+|++|+..+.++ .|
T Consensus 286 ~lt~-~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~-~~~~~~~SpDG~~Ia~~~~~~~~~~I 362 (433)
T PRK04922 286 RLTN-HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGN-YNARASVSPDGKKIAMVHGSGGQYRI 362 (433)
T ss_pred ECcc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCC-CccCEEECCCCCEEEEEECCCCceeE
Confidence 4554 44444556 9999999887764 444 6677776665432 222212 345689999999998765432 69
Q ss_pred EEEeCCCcccC
Q 028802 148 KLWDLDDILKG 158 (203)
Q Consensus 148 ~iwd~~~~~~~ 158 (203)
.+||+.++...
T Consensus 363 ~v~d~~~g~~~ 373 (433)
T PRK04922 363 AVMDLSTGSVR 373 (433)
T ss_pred EEEECCCCCeE
Confidence 99999876543
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.6e-13 Score=105.96 Aligned_cols=122 Identities=17% Similarity=0.257 Sum_probs=102.8
Q ss_pred EeecCCcccEEEEEEeeCCCEEEEecCC-----CeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcE
Q 028802 31 TRSEFSEEELTSVVLMKNGRKVVCGSQS-----GTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLI 104 (203)
Q Consensus 31 ~~~~~~~~~i~~l~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v 104 (203)
.++.+|...|.+++.+|+++++++++.. ..|++|...+. .....+.. |.-.|+.+ |+|++++|++++.|+++
T Consensus 519 ~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W-~~~~~L~~-HsLTVT~l~FSpdg~~LLsvsRDRt~ 596 (764)
T KOG1063|consen 519 HKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW-LQVQELEG-HSLTVTRLAFSPDGRYLLSVSRDRTV 596 (764)
T ss_pred HHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch-hhhheecc-cceEEEEEEECCCCcEEEEeecCceE
Confidence 3556899999999999999999998764 46999998764 55567888 99999999 99999999999999999
Q ss_pred EEEEccCCc----eeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 105 SLVGILPNR----IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 105 ~v~d~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
.+|...... .......|+. -|++..|+|++.+++|++.|..+++|.....
T Consensus 597 sl~~~~~~~~~e~~fa~~k~HtR-IIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 597 SLYEVQEDIKDEFRFACLKAHTR-IIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred Eeeeeecccchhhhhccccccce-EEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 999875321 1233567755 7999999999999999999999999998766
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-12 Score=95.03 Aligned_cols=154 Identities=13% Similarity=0.086 Sum_probs=120.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC---eEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccc----
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS---- 73 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~---- 73 (203)
|.|+|..+.|++++.|..-+||....+ ++...+..+....+++.|+|.++.|++|+....|.||-+... .-.
T Consensus 61 vdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~E-NdWWVsK 139 (361)
T KOG1523|consen 61 VDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQE-NDWWVSK 139 (361)
T ss_pred EeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecc-cceehhh
Confidence 579999999999999999999998433 344455567788999999999999999999999999887532 111
Q ss_pred eeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEcc-----C-------------CceeeeeccCCCcceEEEEEeCC
Q 028802 74 DRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL-----P-------------NRIIQPIAEHSEYPIESLALSHD 134 (203)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~-----~-------------~~~~~~~~~~~~~~i~~~~~~~~ 134 (203)
+.-.. ....|.++ |+|++-+++.|+.|+..+|+..- + |..+..+... .+.+..+.|+|+
T Consensus 140 hikkP-irStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~-ggwvh~v~fs~s 217 (361)
T KOG1523|consen 140 HIKKP-IRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSS-GGWVHGVLFSPS 217 (361)
T ss_pred hhCCc-cccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccC-CCceeeeEeCCC
Confidence 11123 56678999 99999999999999999998642 1 1222333222 347999999999
Q ss_pred CCeEEEEeCCCcEEEEeCCCccc
Q 028802 135 RKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 135 ~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
|..|+-.+.|..+.+=|.....+
T Consensus 218 G~~lawv~Hds~v~~~da~~p~~ 240 (361)
T KOG1523|consen 218 GNRLAWVGHDSTVSFVDAAGPSE 240 (361)
T ss_pred CCEeeEecCCCceEEeecCCCch
Confidence 99999999999999999877753
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.9e-12 Score=90.14 Aligned_cols=110 Identities=9% Similarity=0.133 Sum_probs=81.4
Q ss_pred CcccccCCEEEEE--cCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC---CCeEEEEEcCCcccccee
Q 028802 1 MTFAADAMKLLGT--SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~~~~ 75 (203)
++|+|+|+.+|+. ..+..|.+||+. ++.+..+. ...+..+.|+|+|++|++++. .|.+.+||+.. ...+..
T Consensus 65 ~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-~~~i~~ 140 (194)
T PF08662_consen 65 VAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-KKKIST 140 (194)
T ss_pred EEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-CEEeec
Confidence 5799999987554 456799999997 55555554 466788999999999998874 46799999974 344444
Q ss_pred eecCCCCceeEE-EeeCCCEEEEEcC------CCcEEEEEccCCceeeee
Q 028802 76 FVGLSPNSVDAL-LKLDEDRVITGSE------NGLISLVGILPNRIIQPI 118 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~------dg~v~v~d~~~~~~~~~~ 118 (203)
+. +. .+..+ |+|+|++++++.. |..++||+.. |+.+...
T Consensus 141 ~~--~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 141 FE--HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred cc--cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 43 33 35666 9999999998874 5678889874 6665443
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.46 E-value=8e-12 Score=98.19 Aligned_cols=149 Identities=15% Similarity=0.122 Sum_probs=103.1
Q ss_pred cccccCCEEEEEcCC---CeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEE-ecCCC--eEEEEEcCCcccccee
Q 028802 2 TFAADAMKLLGTSGD---GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSG--TVLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-~~~d~--~i~v~d~~~~~~~~~~ 75 (203)
+|||+|++|+.+... ..|++|++.++.... +..+...+.+++|+|+++.|+. .+.++ .|++|++.. .....
T Consensus 196 ~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~--~~~~~ 272 (417)
T TIGR02800 196 AWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDG--KQLTR 272 (417)
T ss_pred cCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCC--CCEEE
Confidence 699999999887643 479999998875533 3334455667899999987764 44444 588888764 23344
Q ss_pred eecCCCCceeEE-EeeCCCEEEEEcCC-C--cEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCC---cEE
Q 028802 76 FVGLSPNSVDAL-LKLDEDRVITGSEN-G--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS---MLK 148 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d-g--~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~i~ 148 (203)
+.. +....... |+|+|+.|+..+.. + .|+++++.+++.. .+..+.. .+..+.|+|+|++|+.++.++ .|.
T Consensus 273 l~~-~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~-~~~~~~~spdg~~i~~~~~~~~~~~i~ 349 (417)
T TIGR02800 273 LTN-GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGG-YNASPSWSPDGDLIAFVHREGGGFNIA 349 (417)
T ss_pred CCC-CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCC-CccCeEECCCCCEEEEEEccCCceEEE
Confidence 444 44444445 89999988876543 3 5888888776543 3333323 567789999999998887665 789
Q ss_pred EEeCCCcc
Q 028802 149 LWDLDDIL 156 (203)
Q Consensus 149 iwd~~~~~ 156 (203)
+||+.+..
T Consensus 350 ~~d~~~~~ 357 (417)
T TIGR02800 350 VMDLDGGG 357 (417)
T ss_pred EEeCCCCC
Confidence 99987753
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.45 E-value=6e-13 Score=102.49 Aligned_cols=124 Identities=18% Similarity=0.252 Sum_probs=105.0
Q ss_pred eecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCC-------ccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCc
Q 028802 32 RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-------FKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGL 103 (203)
Q Consensus 32 ~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~-------~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~ 103 (203)
++..|...|+.++|.|....|++++.+|.+++|.+.. .-+++.+|.+ |.++|.|+ +.+.+..+++|+.||+
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfra-H~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRA-HEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEec-ccCceEEEEecCCceEEEeeccCce
Confidence 5556778899999999999999999999999999932 1245667889 99999999 7999999999999999
Q ss_pred EEEEEccCC----------ceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028802 104 ISLVGILPN----------RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 104 v~v~d~~~~----------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
|+.|++... ....++.+|++ +++.+++++....|++++.||+++.|+.....+
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtd-avw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~ 430 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTD-AVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP 430 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceecccc-ceeeeeecccccceeeecCCceEEeeccCCcCc
Confidence 999965421 23466788976 899999999999999999999999999876665
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.6e-12 Score=104.27 Aligned_cols=155 Identities=17% Similarity=0.234 Sum_probs=114.4
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC-CcccEEEEEEe-eCCCEEEEecCCCeEEEEEcCCccc--cceeee
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-SEEELTSVVLM-KNGRKVVCGSQSGTVLLYSWGYFKD--CSDRFV 77 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~i~~l~~~-~~~~~l~~~~~d~~i~v~d~~~~~~--~~~~~~ 77 (203)
.|..+..+|++++.-..|+|||.........+.. ....|+++.-+ +.|+.++.|-.||.|++||.+.... .+....
T Consensus 1172 dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R 1251 (1387)
T KOG1517|consen 1172 DWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR 1251 (1387)
T ss_pred ehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeec
Confidence 5666667777777789999999998877776653 34556666543 3578999999999999999985332 344455
Q ss_pred cCCCCc--eeEE-EeeCCCE-EEEEcCCCcEEEEEccCCc--eeeeeccCC--CcceEEEEEeCCCCeEEEEeCCCcEEE
Q 028802 78 GLSPNS--VDAL-LKLDEDR-VITGSENGLISLVGILPNR--IIQPIAEHS--EYPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 78 ~~~~~~--v~~~-~~~~~~~-l~~~~~dg~v~v~d~~~~~--~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~i 149 (203)
. |... |..+ +.+.|-. |++|+.+|.|++||++... ....+..|- +...+++..++....+|+|+. +.|+|
T Consensus 1252 ~-h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikI 1329 (1387)
T KOG1517|consen 1252 E-HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKI 1329 (1387)
T ss_pred c-cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEE
Confidence 5 6555 6666 6665544 9999999999999998632 222333332 225899999999999999998 99999
Q ss_pred EeCCCcccC
Q 028802 150 WDLDDILKG 158 (203)
Q Consensus 150 wd~~~~~~~ 158 (203)
|++...+..
T Consensus 1330 y~~~G~~l~ 1338 (1387)
T KOG1517|consen 1330 YSLSGEQLN 1338 (1387)
T ss_pred EecChhhhc
Confidence 999766544
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.8e-12 Score=102.02 Aligned_cols=155 Identities=16% Similarity=0.176 Sum_probs=112.0
Q ss_pred ccccc-CCEEEEEcCCCeEEEEEcCCCeE--EEe----ecCCcccEEEEEEeeCC--CEEEEecCCCeEEEEEcCCcccc
Q 028802 2 TFAAD-AMKLLGTSGDGTLSVCNLRKNTV--QTR----SEFSEEELTSVVLMKNG--RKVVCGSQSGTVLLYSWGYFKDC 72 (203)
Q Consensus 2 ~~sp~-~~~l~~~~~d~~i~v~d~~~~~~--~~~----~~~~~~~i~~l~~~~~~--~~l~~~~~d~~i~v~d~~~~~~~ 72 (203)
.|+|. ..+|+.|..+|.|.+||++.+.. ... .-.|..+++.+.|..+. .-+++++.||.|..|+++....+
T Consensus 249 ~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P 328 (555)
T KOG1587|consen 249 KFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLP 328 (555)
T ss_pred EeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccc
Confidence 56774 45778889999999999987643 222 23578899999998754 44899999999999988632100
Q ss_pred --------------------------------------------------------------ceeeecCCCCceeEE-Ee
Q 028802 73 --------------------------------------------------------------SDRFVGLSPNSVDAL-LK 89 (203)
Q Consensus 73 --------------------------------------------------------------~~~~~~~~~~~v~~~-~~ 89 (203)
...+.. |.++|.++ ++
T Consensus 329 ~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~-h~g~v~~v~~n 407 (555)
T KOG1587|consen 329 VEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFIT-HIGPVYAVSRN 407 (555)
T ss_pred hhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccc-cCcceEeeecC
Confidence 001112 45677777 77
Q ss_pred eCCCEEEEEcCCCcEEEEEcc-CCceeeeeccCCCcceEEEEEeCCCC-eEEEEeCCCcEEEEeCCCcccC
Q 028802 90 LDEDRVITGSENGLISLVGIL-PNRIIQPIAEHSEYPIESLALSHDRK-FLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 90 ~~~~~l~~~~~dg~v~v~d~~-~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
|=+..++..+.|-.|++|... ...++..+..+.. .+++++|||... .++++..+|.|.+||+.....+
T Consensus 408 PF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~ 477 (555)
T KOG1587|consen 408 PFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEE 477 (555)
T ss_pred CCccceeeeeccceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhccccC
Confidence 766666655559999999977 5667766766654 699999999875 5677778999999999765544
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-11 Score=97.93 Aligned_cols=148 Identities=15% Similarity=0.143 Sum_probs=99.2
Q ss_pred CcccccCCEEEE-EcCCC--eEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC-CCe--EEEEEcCCccccce
Q 028802 1 MTFAADAMKLLG-TSGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGT--VLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~-~~~d~--~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d~~--i~v~d~~~~~~~~~ 74 (203)
++|+|+|+.|+. .+.++ .|++|++.++... .+..+......++|+|+|+.|+.++. .+. |+++++.. ....
T Consensus 253 ~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~--g~~~ 329 (433)
T PRK04922 253 PSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG--GSAE 329 (433)
T ss_pred ceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC--CCeE
Confidence 369999998754 44444 6999999887653 45555555567899999998887663 444 55666543 2233
Q ss_pred eeecCCCCceeEE-EeeCCCEEEEEcCCC---cEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeC---CCcE
Q 028802 75 RFVGLSPNSVDAL-LKLDEDRVITGSENG---LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH---DSML 147 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~dg---~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i 147 (203)
.+.. .......+ |+|+|++|+..+.++ .|.+||+.+++.. .+... . ......|+|||++|+..+. .+.|
T Consensus 330 ~lt~-~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~-~-~~~~p~~spdG~~i~~~s~~~g~~~L 405 (433)
T PRK04922 330 RLTF-QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPG-S-LDESPSFAPNGSMVLYATREGGRGVL 405 (433)
T ss_pred Eeec-CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCC-C-CCCCceECCCCCEEEEEEecCCceEE
Confidence 3333 33333445 899999998875433 5899999887665 34322 2 3456789999999877664 3458
Q ss_pred EEEeCCCc
Q 028802 148 KLWDLDDI 155 (203)
Q Consensus 148 ~iwd~~~~ 155 (203)
.++++.+.
T Consensus 406 ~~~~~~g~ 413 (433)
T PRK04922 406 AAVSTDGR 413 (433)
T ss_pred EEEECCCC
Confidence 88888654
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.9e-11 Score=92.34 Aligned_cols=151 Identities=15% Similarity=0.166 Sum_probs=104.4
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEec-CCCeEEEEEcCCccccceeeecCC
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
.|+|||+++++++.||.|.++|+.+.+.+.++.... ...++++++||+++++++ ..+.+.++|..+ .++++.+.. .
T Consensus 43 ~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~t-le~v~~I~~-~ 119 (369)
T PF02239_consen 43 KFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAET-LEPVKTIPT-G 119 (369)
T ss_dssp E-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE---
T ss_pred EecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEecccc-ccceeeccc-c
Confidence 589999999999999999999999999998887644 467899999999998776 589999999875 455655543 2
Q ss_pred -------CCceeEE-EeeCCCEEEEE-cCCCcEEEEEccCCcee--eeeccCCCcceEEEEEeCCCCeEEEEe-CCCcEE
Q 028802 81 -------PNSVDAL-LKLDEDRVITG-SENGLISLVGILPNRII--QPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLK 148 (203)
Q Consensus 81 -------~~~v~~~-~~~~~~~l~~~-~~dg~v~v~d~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~ 148 (203)
...+..+ .+|....++.. -..+.|.+.|....+.+ ..+... . ......|+|++++++++. .+..|-
T Consensus 120 ~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g-~-~~~D~~~dpdgry~~va~~~sn~i~ 197 (369)
T PF02239_consen 120 GMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVG-R-FPHDGGFDPDGRYFLVAANGSNKIA 197 (369)
T ss_dssp EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---T-TEEEEEE-TTSSEEEEEEGGGTEEE
T ss_pred cccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccc-c-cccccccCcccceeeecccccceeE
Confidence 2345667 57877755555 44588888887665433 233332 2 578899999999887654 667899
Q ss_pred EEeCCCccc
Q 028802 149 LWDLDDILK 157 (203)
Q Consensus 149 iwd~~~~~~ 157 (203)
++|+.+...
T Consensus 198 viD~~~~k~ 206 (369)
T PF02239_consen 198 VIDTKTGKL 206 (369)
T ss_dssp EEETTTTEE
T ss_pred EEeeccceE
Confidence 999877643
|
... |
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-12 Score=99.71 Aligned_cols=143 Identities=18% Similarity=0.238 Sum_probs=116.8
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE
Q 028802 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL 87 (203)
Q Consensus 8 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~ 87 (203)
..++.++.||.+.+.+ ..++....+..|.+.+.+-.|+|+|.-|++++.||.|++|.-. +-...++.. ...+|+|+
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs--GMLRStl~Q-~~~~v~c~ 151 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS--GMLRSTVVQ-NEESIRCA 151 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc--chHHHHHhh-cCceeEEE
Confidence 4678888999999887 4566777888999999999999999999999999999999853 444455555 77889999
Q ss_pred -EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 88 -LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 88 -~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
|.|+...++.+..+ .+.+=.+.....+..+++|.+ -|.++.|++....+++|+.|-..+|||.-...
T Consensus 152 ~W~p~S~~vl~c~g~-h~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~ 219 (737)
T KOG1524|consen 152 RWAPNSNSIVFCQGG-HISIKPLAANSKIIRWRAHDG-LVLSLSWSTQSNIIASGGEDFRFKIWDAQGAN 219 (737)
T ss_pred EECCCCCceEEecCC-eEEEeecccccceeEEeccCc-EEEEeecCccccceeecCCceeEEeecccCcc
Confidence 99988877776544 466666666656667889955 89999999999999999999999999976544
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.2e-11 Score=95.70 Aligned_cols=153 Identities=17% Similarity=0.077 Sum_probs=96.7
Q ss_pred cccccCCEEEEEcC-CC--eE--EEEEcCC---CeEEEeecCCcccEEEEEEeeCCCEEEEec-CCCeEEEE--EcCCcc
Q 028802 2 TFAADAMKLLGTSG-DG--TL--SVCNLRK---NTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLY--SWGYFK 70 (203)
Q Consensus 2 ~~sp~~~~l~~~~~-d~--~i--~v~d~~~---~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~d~~i~v~--d~~~~~ 70 (203)
+|||||+.|+..+. +| .+ .+|++.. +................+|+|||+.|+..+ .++...+| ++...+
T Consensus 237 ~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g 316 (428)
T PRK01029 237 TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG 316 (428)
T ss_pred EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc
Confidence 69999998877543 22 33 4467654 233333322223446789999999877655 45655555 443222
Q ss_pred ccceeeecCCCCceeEE-EeeCCCEEEEEcCC---CcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeC---
Q 028802 71 DCSDRFVGLSPNSVDAL-LKLDEDRVITGSEN---GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH--- 143 (203)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d---g~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--- 143 (203)
.....+.. ....+... |+|+|+.|+....+ ..|.+||+.+++... +..... .+....|+|||++|+....
T Consensus 317 ~~~~~lt~-~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~-~~~~p~wSpDG~~L~f~~~~~g 393 (428)
T PRK01029 317 QSPRLLTK-KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPE-NKESPSWAIDSLHLVYSAGNSN 393 (428)
T ss_pred cceEEecc-CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCC-CccceEECCCCCEEEEEECCCC
Confidence 23344444 44455566 99999999876543 469999998887654 332222 5677899999998875442
Q ss_pred CCcEEEEeCCCccc
Q 028802 144 DSMLKLWDLDDILK 157 (203)
Q Consensus 144 d~~i~iwd~~~~~~ 157 (203)
...|+++++.++..
T Consensus 394 ~~~L~~vdl~~g~~ 407 (428)
T PRK01029 394 ESELYLISLITKKT 407 (428)
T ss_pred CceEEEEECCCCCE
Confidence 35688889876643
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.1e-12 Score=95.63 Aligned_cols=132 Identities=13% Similarity=0.173 Sum_probs=110.3
Q ss_pred ccccc--CCEEEEEcCCCeEEEEEcCCC-eEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028802 2 TFAAD--AMKLLGTSGDGTLSVCNLRKN-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp~--~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
.|-|. ...+|+++.-+.|++||.+.+ +++..+...+.+++++...|++++++++...+.+..||++........+.+
T Consensus 209 ~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 209 RFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred eecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC
Confidence 45555 678999999999999999865 567888888899999999999999999999999999999864444445788
Q ss_pred CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCC
Q 028802 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK 136 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 136 (203)
..+.++++ .+|..+++++++.|+.|+|+|+.+.+.+....... .++++.+.++-+
T Consensus 289 -~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs--~lt~il~~~~~n 344 (412)
T KOG3881|consen 289 -ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS--RLTFILLRDDVN 344 (412)
T ss_pred -ccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc--cccEEEecCCcc
Confidence 88899999 89999999999999999999999977776665542 578888866543
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.7e-13 Score=100.29 Aligned_cols=145 Identities=14% Similarity=0.178 Sum_probs=121.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
|.|-|-.-+|++++..|.++--|+.+|+++..+....+.+..+.-+|-+..+-+|..+|+|.+|... ...++..+.. |
T Consensus 215 LeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~-skePLvKiLc-H 292 (545)
T KOG1272|consen 215 LEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPN-SKEPLVKILC-H 292 (545)
T ss_pred hcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCC-CcchHHHHHh-c
Confidence 4577877788999999999999999999999888878888889999988888899999999999986 4677777778 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 151 (203)
.++|.++ +.++|.++++.+.|+.++|||++....+.++... . +...+++|..| +++++....+.||.
T Consensus 293 ~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp-~-~a~~ls~Sqkg--lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 293 RGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP-H-PASNLSLSQKG--LLALSYGDHVQIWK 360 (545)
T ss_pred CCCcceEEECCCCcEEeecccccceeEeeeccccccceeecC-C-Ccccccccccc--ceeeecCCeeeeeh
Confidence 9999999 9999999999999999999999987766666552 2 56777887665 33444556889994
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-11 Score=96.88 Aligned_cols=149 Identities=11% Similarity=0.079 Sum_probs=116.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEee---cCCcccEEEEEEeeCC-----CEEEEecCCCeEEEEEcCCcccc
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRS---EFSEEELTSVVLMKNG-----RKVVCGSQSGTVLLYSWGYFKDC 72 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~---~~~~~~i~~l~~~~~~-----~~l~~~~~d~~i~v~d~~~~~~~ 72 (203)
++|..||++++.|..+|+|.+-+-.. +....+ -+..++|++++|+|.. ..+++.....++.+|.+. +..
T Consensus 138 CsWtnDGqylalG~~nGTIsiRNk~g-Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls--G~~ 214 (1081)
T KOG1538|consen 138 CSWTNDGQYLALGMFNGTISIRNKNG-EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS--GKQ 214 (1081)
T ss_pred eeecCCCcEEEEeccCceEEeecCCC-CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec--cee
Confidence 36899999999999999999997543 332233 3467899999999953 467888888889998875 454
Q ss_pred ceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028802 73 SDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 151 (203)
+..-.. -.-...|+ +.|+|.+++.|+.++.+++|- +.|-.+.++-.. +..|+.++..|++++++.|+.||+|..|+
T Consensus 215 Igk~r~-L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~-D~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 215 IGKDRA-LNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQ-DSWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred eccccc-CCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeecccc-ceeEEEEEEccCCceEEEEEccCeeehhh
Confidence 443333 34455677 899999999999999999996 556666666554 45899999999999999999999999998
Q ss_pred CCCc
Q 028802 152 LDDI 155 (203)
Q Consensus 152 ~~~~ 155 (203)
+...
T Consensus 292 l~fS 295 (1081)
T KOG1538|consen 292 LIFS 295 (1081)
T ss_pred hHHh
Confidence 6543
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.1e-13 Score=109.48 Aligned_cols=115 Identities=17% Similarity=0.321 Sum_probs=105.1
Q ss_pred eecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEcc
Q 028802 32 RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL 110 (203)
Q Consensus 32 ~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~ 110 (203)
.+.+|...|.|..|...|.++++|+.|..++||...+ ..++....+ |.+.++.+ .+.....+++++.|..|++|.+.
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et-~~~lAs~rG-hs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMET-ARCLASCRG-HSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccc-hhhhccCCC-CccccchhccchhhhhhhhcccCceEEEEecC
Confidence 4457889999999999999999999999999999875 688899999 99999999 77788889999999999999999
Q ss_pred CCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 111 PNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 111 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
++.++..+.+|++ +|++++|+|-. +.+.||++++||.+
T Consensus 263 ~~~pvsvLrghtg-avtaiafsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 263 DGAPVSVLRGHTG-AVTAIAFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred CCchHHHHhcccc-ceeeeccCccc----cCCCCCceEecccc
Confidence 9999999999977 89999999975 66789999999998
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3e-11 Score=97.41 Aligned_cols=153 Identities=16% Similarity=0.155 Sum_probs=116.1
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEE----eecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCC---ccccce
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQT----RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY---FKDCSD 74 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~----~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~---~~~~~~ 74 (203)
.+++.|.+.+... +..+.+|....+.... .-..|...+++.+++|.+++++++..+|+|.+|.--. .....+
T Consensus 167 ~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t 245 (792)
T KOG1963|consen 167 VDNNSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCT 245 (792)
T ss_pred EEcCCceEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccce
Confidence 3455565554443 4568889887643111 1124666789999999999999999999999995322 123345
Q ss_pred eeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
.+.- |...|.++ |+++|.+|++|+..|.+.+|.+.+++... ++.- +++|..+.++||+.+.+....|..|.+-...
T Consensus 246 ~lHW-H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf-LPRL-gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~ 322 (792)
T KOG1963|consen 246 LLHW-HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQF-LPRL-GSPILHIVVSPDSDLYSLVLEDNQIHLIKAS 322 (792)
T ss_pred EEEe-cccccceeEEecCCceEeecccceEEEEEeecCCCccc-cccc-CCeeEEEEEcCCCCeEEEEecCceEEEEecc
Confidence 5666 88899999 99999999999999999999999987332 3322 4489999999999999999999999999887
Q ss_pred CcccC
Q 028802 154 DILKG 158 (203)
Q Consensus 154 ~~~~~ 158 (203)
+....
T Consensus 323 dl~~k 327 (792)
T KOG1963|consen 323 DLEIK 327 (792)
T ss_pred chhhh
Confidence 66543
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.6e-11 Score=95.53 Aligned_cols=148 Identities=15% Similarity=0.147 Sum_probs=95.2
Q ss_pred CcccccCCEEEE-EcCCCeEEEE--EcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC-CCeEEEEEcCCccccceee
Q 028802 1 MTFAADAMKLLG-TSGDGTLSVC--NLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~-~~~d~~i~v~--d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~ 76 (203)
.+|||||+.|+. .+.++...|| ++.++. ...+..+........|+|||+.|+..+. .+...+|.+...+.....+
T Consensus 245 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l 323 (427)
T PRK02889 245 PAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV 323 (427)
T ss_pred eEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE
Confidence 369999998864 5667765555 454444 3455555555677899999998876554 4666666654322233333
Q ss_pred ecCCCCceeEE-EeeCCCEEEEEcCCC---cEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCC---cEEE
Q 028802 77 VGLSPNSVDAL-LKLDEDRVITGSENG---LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS---MLKL 149 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~dg---~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~i~i 149 (203)
.. ........ |+|+|++|+..+.++ .|.+||+.+++... +... . ......|+|||++|+..+.++ .+.+
T Consensus 324 t~-~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~-~~~~p~~spdg~~l~~~~~~~g~~~l~~ 399 (427)
T PRK02889 324 TF-TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-T-RDESPSFAPNGRYILYATQQGGRSVLAA 399 (427)
T ss_pred ec-CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-C-CccCceECCCCCEEEEEEecCCCEEEEE
Confidence 32 22223344 899999999877654 59999998876553 3322 2 346789999999988777433 3555
Q ss_pred EeCC
Q 028802 150 WDLD 153 (203)
Q Consensus 150 wd~~ 153 (203)
.++.
T Consensus 400 ~~~~ 403 (427)
T PRK02889 400 VSSD 403 (427)
T ss_pred EECC
Confidence 5553
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.2e-11 Score=89.80 Aligned_cols=153 Identities=10% Similarity=0.049 Sum_probs=103.3
Q ss_pred CcccccCCEEEEEcC-CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 1 MTFAADAMKLLGTSG-DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
|+|++||..+++++. +..|.|||..++..+.......+.+.-+.|+||+.+|+.+..|+..++|..........-..+
T Consensus 201 mqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lg- 279 (445)
T KOG2139|consen 201 MQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILG- 279 (445)
T ss_pred EEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceecc-
Confidence 679999999998875 678999999998765555444577889999999999999999999999965432222222333
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC-Cc-----------eee---e------eccC--CCcceEEEEEeCCC
Q 028802 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILP-NR-----------IIQ---P------IAEH--SEYPIESLALSHDR 135 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~-~~-----------~~~---~------~~~~--~~~~i~~~~~~~~~ 135 (203)
.+.+... |+|+|.+|+.++.... ++|.+.. ++ .+. . ..+. -...+.+++|.|.|
T Consensus 280 -sgrvqtacWspcGsfLLf~~sgsp-~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsG 357 (445)
T KOG2139|consen 280 -SGRVQTACWSPCGSFLLFACSGSP-RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSG 357 (445)
T ss_pred -CCceeeeeecCCCCEEEEEEcCCc-eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCC
Confidence 3455555 9999998887665332 3444321 00 000 0 0110 01368899999999
Q ss_pred CeEEEEeCCC--------cEEEEeCCCcc
Q 028802 136 KFLGSISHDS--------MLKLWDLDDIL 156 (203)
Q Consensus 136 ~~l~~~~~d~--------~i~iwd~~~~~ 156 (203)
.+||+.-..+ .|.+||.+...
T Consensus 358 eyLav~fKg~~~v~~~k~~i~~fdtr~sp 386 (445)
T KOG2139|consen 358 EYLAVIFKGQSFVLLCKLHISRFDTRKSP 386 (445)
T ss_pred CEEEEEEcCCchhhhhhhhhhhhcccccC
Confidence 9999876433 36777776543
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.9e-11 Score=94.83 Aligned_cols=149 Identities=17% Similarity=0.095 Sum_probs=100.6
Q ss_pred cccccCCEEEE-EcCCC--eEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC-CC--eEEEEEcCCcccccee
Q 028802 2 TFAADAMKLLG-TSGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG--TVLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~~~l~~-~~~d~--~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~ 75 (203)
+|||||+.|+. .+.++ .|++||+.++.. ..+..+........|+|||+.|+..+. .+ .|+++|+.. .....
T Consensus 252 ~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g--~~~~~ 328 (435)
T PRK05137 252 RFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG--SNPRR 328 (435)
T ss_pred EECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC--CCeEE
Confidence 69999998754 44444 488889887765 445555566678899999998887663 33 677778653 33444
Q ss_pred eecCCCCceeEE-EeeCCCEEEEEcCC---CcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCC------C
Q 028802 76 FVGLSPNSVDAL-LKLDEDRVITGSEN---GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD------S 145 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d---g~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------~ 145 (203)
+.. ....+... |+|+|+.|+....+ ..|.+|++..+.. ..+... . .+..+.|+|||+.|+..+.+ .
T Consensus 329 lt~-~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~-~-~~~~p~~spDG~~i~~~~~~~~~~~~~ 404 (435)
T PRK05137 329 ISF-GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSG-F-LVEGPTWAPNGRVIMFFRQTPGSGGAP 404 (435)
T ss_pred eec-CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCC-C-CCCCCeECCCCCEEEEEEccCCCCCcc
Confidence 544 44445556 99999999887643 3588888765443 334322 2 46778999999998765532 3
Q ss_pred cEEEEeCCCccc
Q 028802 146 MLKLWDLDDILK 157 (203)
Q Consensus 146 ~i~iwd~~~~~~ 157 (203)
.|+++++.+...
T Consensus 405 ~L~~~dl~g~~~ 416 (435)
T PRK05137 405 KLYTVDLTGRNE 416 (435)
T ss_pred eEEEEECCCCce
Confidence 588888865543
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=6e-11 Score=93.66 Aligned_cols=150 Identities=17% Similarity=0.073 Sum_probs=100.2
Q ss_pred cccccCCEEEEEcCC---CeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEE-ecCCC--eEEEEEcCCcccccee
Q 028802 2 TFAADAMKLLGTSGD---GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSG--TVLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-~~~d~--~i~v~d~~~~~~~~~~ 75 (203)
+|||||+.|+..+.+ ..|++|++.+++... +......+....|+|+|+.|+. .+.++ .|++||+.. .....
T Consensus 205 ~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~--~~~~~ 281 (430)
T PRK00178 205 RWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLAS--RQLSR 281 (430)
T ss_pred eECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCC--CCeEE
Confidence 699999999876543 469999998875533 3333344557899999998874 44444 688888864 23344
Q ss_pred eecCCCCceeEE-EeeCCCEEEEEcC-CC--cEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCC-C--cEE
Q 028802 76 FVGLSPNSVDAL-LKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD-S--MLK 148 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~-dg--~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~--~i~ 148 (203)
+.. +....... |+|+|+.|+..+. ++ .|+++++.+++........ . ......|+|+|++|+..... + .|.
T Consensus 282 lt~-~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~-~-~~~~~~~Spdg~~i~~~~~~~~~~~l~ 358 (430)
T PRK00178 282 VTN-HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVG-N-YNARPRLSADGKTLVMVHRQDGNFHVA 358 (430)
T ss_pred ccc-CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC-C-CccceEECCCCCEEEEEEccCCceEEE
Confidence 554 44444555 8999998877654 33 5777788777654322211 1 23457899999999876643 3 588
Q ss_pred EEeCCCccc
Q 028802 149 LWDLDDILK 157 (203)
Q Consensus 149 iwd~~~~~~ 157 (203)
+||+.++..
T Consensus 359 ~~dl~tg~~ 367 (430)
T PRK00178 359 AQDLQRGSV 367 (430)
T ss_pred EEECCCCCE
Confidence 899887653
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-11 Score=101.95 Aligned_cols=147 Identities=19% Similarity=0.245 Sum_probs=112.7
Q ss_pred cCCEEEEEcCCCeEEEEEcCCC---eEEEeecCCccc--EEEEEEeeCCC-EEEEecCCCeEEEEEcCCc-cccceeeec
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEE--LTSVVLMKNGR-KVVCGSQSGTVLLYSWGYF-KDCSDRFVG 78 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~--i~~l~~~~~~~-~l~~~~~d~~i~v~d~~~~-~~~~~~~~~ 78 (203)
.|+.+++|..||.|++||.+.. ..+...+.|... |..+.+.+.|- .|++|+.+|.|++||++.. ....-.+..
T Consensus 1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~ 1299 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA 1299 (1387)
T ss_pred CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee
Confidence 4789999999999999998753 345666777766 99999998775 4999999999999999863 111112222
Q ss_pred CCC--C-ceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC------CcceEEEEEeCCCCeEEEEeCCCcEE
Q 028802 79 LSP--N-SVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS------EYPIESLALSHDRKFLGSISHDSMLK 148 (203)
Q Consensus 79 ~~~--~-~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~d~~i~ 148 (203)
+. + .++++ .++....+++|+. +.|.||++. |+.+..++.+. ...+.|++|+|-.-.||+|+.|..|.
T Consensus 1300 -~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~ 1376 (1387)
T KOG1517|consen 1300 -HWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVS 1376 (1387)
T ss_pred -ccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEE
Confidence 22 3 48888 7999999999998 899999975 45444443321 23689999999999999999999999
Q ss_pred EEeCCCc
Q 028802 149 LWDLDDI 155 (203)
Q Consensus 149 iwd~~~~ 155 (203)
||.....
T Consensus 1377 iYs~~k~ 1383 (1387)
T KOG1517|consen 1377 IYSCEKP 1383 (1387)
T ss_pred EeecCCc
Confidence 9987654
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-11 Score=98.09 Aligned_cols=154 Identities=15% Similarity=0.151 Sum_probs=120.2
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCC--C--eEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRK--N--TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~--~--~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 77 (203)
++||+++++|+|..||.|.+|.--. + .....+..|...|.+++|+++|.+|++|+..+.+-+|.+.+.+ .+-+.
T Consensus 212 ~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLP 289 (792)
T KOG1963|consen 212 ALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLP 289 (792)
T ss_pred EeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--ccccc
Confidence 6899999999999999999997443 1 2234566788999999999999999999999999999998643 22333
Q ss_pred cCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC----------CcceEEEEEeCCCCeEEEEeCCCc
Q 028802 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS----------EYPIESLALSHDRKFLGSISHDSM 146 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~----------~~~i~~~~~~~~~~~l~~~~~d~~ 146 (203)
. -..+|..+ ++|++.+.+....|..|++....+.....++.+-. ..-.+.++++|.-+.++..+..++
T Consensus 290 R-Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~ 368 (792)
T KOG1963|consen 290 R-LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGH 368 (792)
T ss_pred c-cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCce
Confidence 3 56788888 89999999999999999998875544333332211 113566889997778888999999
Q ss_pred EEEEeCCCcccC
Q 028802 147 LKLWDLDDILKG 158 (203)
Q Consensus 147 i~iwd~~~~~~~ 158 (203)
|.+||+-+-...
T Consensus 369 vQ~ydl~td~~i 380 (792)
T KOG1963|consen 369 VQFYDLYTDSTI 380 (792)
T ss_pred EEEEecccccee
Confidence 999999776554
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.4e-11 Score=93.07 Aligned_cols=150 Identities=14% Similarity=0.111 Sum_probs=96.7
Q ss_pred cccccCCEEEEEcCC---CeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEE-ecCCCe--EEEEEcCCcccccee
Q 028802 2 TFAADAMKLLGTSGD---GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSGT--VLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-~~~d~~--i~v~d~~~~~~~~~~ 75 (203)
+|||||+.|+..+.+ ..|++||+.+++... +..........+|+|+|+.|+. .+.++. |+++|+.. .....
T Consensus 224 ~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~t--g~~~~ 300 (448)
T PRK04792 224 AWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIAT--KALTR 300 (448)
T ss_pred eECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCC--CCeEE
Confidence 699999998876542 368999998875432 2222233457899999998865 455564 77777753 33444
Q ss_pred eecCCCCceeEE-EeeCCCEEEEEcC-CC--cEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeC-CC--cEE
Q 028802 76 FVGLSPNSVDAL-LKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH-DS--MLK 148 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~-dg--~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~ 148 (203)
+.. +....... |+|+|+.|+..+. ++ .|+++|+.+++... +..... .....+|+|||++|+..+. ++ .|.
T Consensus 301 lt~-~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~-~~~~~~~SpDG~~l~~~~~~~g~~~I~ 377 (448)
T PRK04792 301 ITR-HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGE-QNLGGSITPDGRSMIMVNRTNGKFNIA 377 (448)
T ss_pred Ccc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCC-CCcCeeECCCCCEEEEEEecCCceEEE
Confidence 554 44444555 9999998887654 33 47777877776543 222212 2345789999999887654 33 466
Q ss_pred EEeCCCccc
Q 028802 149 LWDLDDILK 157 (203)
Q Consensus 149 iwd~~~~~~ 157 (203)
++|+.++..
T Consensus 378 ~~dl~~g~~ 386 (448)
T PRK04792 378 RQDLETGAM 386 (448)
T ss_pred EEECCCCCe
Confidence 678777643
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.36 E-value=6e-11 Score=99.07 Aligned_cols=156 Identities=15% Similarity=0.135 Sum_probs=110.8
Q ss_pred cccCCEEEEEcCCCeEEEEEcCC-----C--eEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcc-c----
Q 028802 4 AADAMKLLGTSGDGTLSVCNLRK-----N--TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-D---- 71 (203)
Q Consensus 4 sp~~~~l~~~~~d~~i~v~d~~~-----~--~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~-~---- 71 (203)
++++.++++|+.||+|++|+.+. + +...++.....++..+...+.+..+++++.||.|++.++.... .
T Consensus 1058 ~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~ 1137 (1431)
T KOG1240|consen 1058 SEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVA 1137 (1431)
T ss_pred CCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccccccccee
Confidence 34558999999999999999864 1 1222333346788899999999999999999999999987521 1
Q ss_pred -cceeeecCCCCceeEE--E-eeCC-CEEEEEcCCCcEEEEEccCCceeeeeccC--CCcceEEEEEeCCCCeEEEEeCC
Q 028802 72 -CSDRFVGLSPNSVDAL--L-KLDE-DRVITGSENGLISLVGILPNRIIQPIAEH--SEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 72 -~~~~~~~~~~~~v~~~--~-~~~~-~~l~~~~~dg~v~v~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d 144 (203)
+......-..+.+..+ + ...+ ..++.+..-+.|..||++...-...++.. .+ .|++++.+|.+.+++.|+..
T Consensus 1138 ~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG-~vTSi~idp~~~WlviGts~ 1216 (1431)
T KOG1240|consen 1138 TQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG-LVTSIVIDPWCNWLVIGTSR 1216 (1431)
T ss_pred eeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc-ceeEEEecCCceEEEEecCC
Confidence 1111111012344444 3 2223 47888888899999999876655444322 13 79999999999999999999
Q ss_pred CcEEEEeCCCcccCCC
Q 028802 145 SMLKLWDLDDILKGSG 160 (203)
Q Consensus 145 ~~i~iwd~~~~~~~~~ 160 (203)
|.+.+||++=..+...
T Consensus 1217 G~l~lWDLRF~~~i~s 1232 (1431)
T KOG1240|consen 1217 GQLVLWDLRFRVPILS 1232 (1431)
T ss_pred ceEEEEEeecCceeec
Confidence 9999999987665543
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.8e-11 Score=94.93 Aligned_cols=149 Identities=19% Similarity=0.236 Sum_probs=114.5
Q ss_pred EEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-----CCCC--
Q 028802 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-----LSPN-- 82 (203)
Q Consensus 10 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-----~~~~-- 82 (203)
|+.++....|+-+++..|..+..+....+.++++..++-..+|++|+.+|.|..||.+.. ..+..+.. .+.+
T Consensus 148 ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~k-srv~~l~~~~~v~s~pg~~ 226 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDK-SRVGTLDAASSVNSHPGGD 226 (703)
T ss_pred EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhh-hhheeeecccccCCCcccc
Confidence 444444467999999999999988888899999999999999999999999999999753 33333321 0222
Q ss_pred ---ceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCC--CeEEEEeCCCcEEEEeCCCcc
Q 028802 83 ---SVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR--KFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 83 ---~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~ 156 (203)
.|+++ |+.+|-.+++|+..|.|.+||+++.+++..-......+|..+.|.+.+ ..|++. ....++|||-.++.
T Consensus 227 ~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk 305 (703)
T KOG2321|consen 227 AAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGK 305 (703)
T ss_pred ccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCC
Confidence 38888 888899999999999999999999888765433334589999998763 445444 45789999988887
Q ss_pred cCCC
Q 028802 157 KGSG 160 (203)
Q Consensus 157 ~~~~ 160 (203)
+...
T Consensus 306 ~~as 309 (703)
T KOG2321|consen 306 PMAS 309 (703)
T ss_pred ceee
Confidence 6644
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.6e-11 Score=89.34 Aligned_cols=150 Identities=15% Similarity=0.184 Sum_probs=108.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC-CcccEEEEEEeeCC-CEEEEecCCCeEEEEEcCCccc-------
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-SEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKD------- 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~i~~l~~~~~~-~~l~~~~~d~~i~v~d~~~~~~------- 71 (203)
++|++.-..++++..|-.|++|+-.. .....++. ....|.+++|-|.+ ..|++++.. -|.+|.......
T Consensus 104 ~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~ 181 (445)
T KOG2139|consen 104 VAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRM 181 (445)
T ss_pred EeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccccccccc
Confidence 46888666788899999999999766 33334432 34679999999955 566666654 489997742111
Q ss_pred ----cceeeecCCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCC
Q 028802 72 ----CSDRFVGLSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS 145 (203)
Q Consensus 72 ----~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 145 (203)
..+.+......+|+++ |.++|..+++++. +..|.|||..++..+.......+ .++-+.|+||+.+|..+..|+
T Consensus 182 ~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glg-g~slLkwSPdgd~lfaAt~da 260 (445)
T KOG2139|consen 182 MSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLG-GFSLLKWSPDGDVLFAATCDA 260 (445)
T ss_pred ccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCC-ceeeEEEcCCCCEEEEecccc
Confidence 1111221123578999 9999999998886 67799999999877655533323 688899999999999999999
Q ss_pred cEEEEeCC
Q 028802 146 MLKLWDLD 153 (203)
Q Consensus 146 ~i~iwd~~ 153 (203)
..++|+..
T Consensus 261 vfrlw~e~ 268 (445)
T KOG2139|consen 261 VFRLWQEN 268 (445)
T ss_pred eeeeehhc
Confidence 99999543
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-11 Score=92.45 Aligned_cols=117 Identities=18% Similarity=0.206 Sum_probs=93.7
Q ss_pred EEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeec
Q 028802 41 TSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA 119 (203)
Q Consensus 41 ~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~ 119 (203)
..++|+.+|..|++++.||.+++|++.. ...+..... |...|.++ |+|+|++|++.+.+ ..+||+.+++..++...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps-~~t~l~e~~-~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPS-MLTILEEIA-HHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCc-chhhhhhHh-hcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 5789999999999999999999999864 344445556 88899999 99999999999999 89999998772211111
Q ss_pred ----------------------------c-------------CC------------CcceEEEEEeCCCCeEEEEeCCCc
Q 028802 120 ----------------------------E-------------HS------------EYPIESLALSHDRKFLGSISHDSM 146 (203)
Q Consensus 120 ----------------------------~-------------~~------------~~~i~~~~~~~~~~~l~~~~~d~~ 146 (203)
. +. ...|++++.+++|++++.|+.||.
T Consensus 225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGs 304 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGS 304 (398)
T ss_pred CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCc
Confidence 0 00 016899999999999999999999
Q ss_pred EEEEeCCCcccCCC
Q 028802 147 LKLWDLDDILKGSG 160 (203)
Q Consensus 147 i~iwd~~~~~~~~~ 160 (203)
|.|++..+.+.-+-
T Consensus 305 Vai~~~~~lq~~~~ 318 (398)
T KOG0771|consen 305 VAIYDAKSLQRLQY 318 (398)
T ss_pred EEEEEeceeeeeEe
Confidence 99999988865443
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-10 Score=89.50 Aligned_cols=131 Identities=13% Similarity=0.202 Sum_probs=100.4
Q ss_pred CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEE--ecCCCeEEEEEcCCccccceeeecCCCCceeEE-EeeCC
Q 028802 16 DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC--GSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDE 92 (203)
Q Consensus 16 d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~ 92 (203)
..+++++++.+......+.. .++|+++.|+|+++.+++ |-.--.+.+||++ +.++..+ ..++-.++ |+|.|
T Consensus 250 Eq~Lyll~t~g~s~~V~L~k-~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--~~~v~df---~egpRN~~~fnp~g 323 (566)
T KOG2315|consen 250 EQTLYLLATQGESVSVPLLK-EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--GKPVFDF---PEGPRNTAFFNPHG 323 (566)
T ss_pred cceEEEEEecCceEEEecCC-CCCceEEEECCCCCEEEEEEecccceEEEEcCC--CCEeEeC---CCCCccceEECCCC
Confidence 34688888885555544443 789999999999977654 4456789999986 5565544 34555666 89999
Q ss_pred CEEEEEcC---CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeC------CCcEEEEeCCCc
Q 028802 93 DRVITGSE---NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH------DSMLKLWDLDDI 155 (203)
Q Consensus 93 ~~l~~~~~---dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~ 155 (203)
++|+.++- .|.|-|||+.+.+++..+... ..+-+.|+|||++++|++. |..++||+....
T Consensus 324 ~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~---~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 324 NIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA---NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred CEEEEeecCCCCCceEEEeccchhhccccccC---CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 99998764 588999999998888888765 3466799999999998874 678999997654
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.7e-12 Score=104.35 Aligned_cols=103 Identities=11% Similarity=0.171 Sum_probs=88.6
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCC
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 81 (203)
.|...|.++++|+.|..++||...+..++....+|.+.|+.++.+....++++++.|..|++|-+.. +.++..+.+ |.
T Consensus 197 ~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~-~~pvsvLrg-ht 274 (1113)
T KOG0644|consen 197 IFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD-GAPVSVLRG-HT 274 (1113)
T ss_pred eeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC-CchHHHHhc-cc
Confidence 4677899999999999999999999999999999999999999998888999999999999999975 688888999 99
Q ss_pred CceeEE-EeeCCCEEEEEcCCCcEEEEEcc
Q 028802 82 NSVDAL-LKLDEDRVITGSENGLISLVGIL 110 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~ 110 (203)
+.|+++ |+|-. +.+.||++++||.+
T Consensus 275 gavtaiafsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 275 GAVTAIAFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred cceeeeccCccc----cCCCCCceEecccc
Confidence 999999 88753 44555666666543
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.1e-11 Score=85.53 Aligned_cols=145 Identities=10% Similarity=0.100 Sum_probs=107.0
Q ss_pred CcccccC-CEEEEEcCCCeEEEEEcCCCeE---EEeecCCcccEEEEEEee-CCCEEEEecCC-CeEEEEEcCCccccce
Q 028802 1 MTFAADA-MKLLGTSGDGTLSVCNLRKNTV---QTRSEFSEEELTSVVLMK-NGRKVVCGSQS-GTVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~-~~l~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~i~~l~~~~-~~~~l~~~~~d-~~i~v~d~~~~~~~~~ 74 (203)
++|...+ +.+|+.+.||.|++||++...- +..-.....+...++|++ |-+++++-..| ..|.+.|++....++.
T Consensus 202 Iaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva 281 (364)
T KOG0290|consen 202 IAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVA 281 (364)
T ss_pred EEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCccee
Confidence 4677655 4678999999999999987533 222233356788999998 45677776554 5799999998888999
Q ss_pred eeecCCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCC------ceeeeeccCCCcceEEEEEeCC-CCeEEEEeCCC
Q 028802 75 RFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPN------RIIQPIAEHSEYPIESLALSHD-RKFLGSISHDS 145 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~-~~~~l~~~~~dg~v~v~d~~~~------~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~ 145 (203)
.+.. |.+.|..+ |.| ....|++++.|..+.+||+.+- .++..+.. +..|..+.|++. +.+|+.+. ++
T Consensus 282 ~L~~-H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a--~~EVNqi~Ws~~~~Dwiai~~-~k 357 (364)
T KOG0290|consen 282 RLRN-HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTA--GGEVNQIQWSSSQPDWIAICF-GK 357 (364)
T ss_pred hhhc-CcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhc--cceeeeeeecccCCCEEEEEe-cC
Confidence 9999 99999999 887 4678889999999999999752 12333333 337999999974 45666654 44
Q ss_pred cEEE
Q 028802 146 MLKL 149 (203)
Q Consensus 146 ~i~i 149 (203)
++.+
T Consensus 358 klei 361 (364)
T KOG0290|consen 358 KLEI 361 (364)
T ss_pred eeeE
Confidence 5444
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.8e-10 Score=81.40 Aligned_cols=97 Identities=12% Similarity=0.242 Sum_probs=80.6
Q ss_pred cCCCeEEEEEcCCCeE--EEeecCCcccEEEEEEeeCCCEEEEecCCCe-EEEEEcCCccccceeee-cCCCCceeEE-E
Q 028802 14 SGDGTLSVCNLRKNTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQSGT-VLLYSWGYFKDCSDRFV-GLSPNSVDAL-L 88 (203)
Q Consensus 14 ~~d~~i~v~d~~~~~~--~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~-i~v~d~~~~~~~~~~~~-~~~~~~v~~~-~ 88 (203)
-.-|.|+|-|+..... ...+..|.+.|.+++++.+|..+++++..|+ |+|||..+ +..+..+. +.....+.++ |
T Consensus 156 ~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~-g~~l~E~RRG~d~A~iy~iaF 234 (346)
T KOG2111|consen 156 FKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED-GTLLQELRRGVDRADIYCIAF 234 (346)
T ss_pred CccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC-CcEeeeeecCCchheEEEEEe
Confidence 3468999999876544 4678899999999999999999999999886 78999985 45555554 2234579999 9
Q ss_pred eeCCCEEEEEcCCCcEEEEEccC
Q 028802 89 KLDEDRVITGSENGLISLVGILP 111 (203)
Q Consensus 89 ~~~~~~l~~~~~dg~v~v~d~~~ 111 (203)
+|+..++++++..|+|+++.++.
T Consensus 235 Sp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 235 SPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CCCccEEEEEcCCCeEEEEEeec
Confidence 99999999999999999999874
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.6e-10 Score=87.86 Aligned_cols=155 Identities=14% Similarity=0.027 Sum_probs=92.5
Q ss_pred cccccCCE--EE-EEcCC--CeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC-CC----eEEEEEcCCc-c
Q 028802 2 TFAADAMK--LL-GTSGD--GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG----TVLLYSWGYF-K 70 (203)
Q Consensus 2 ~~sp~~~~--l~-~~~~d--~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d~----~i~v~d~~~~-~ 70 (203)
+|||||+. ++ +...+ ..|++.++.+++... +....+.....+|+|||+.|+..+. .| .+..|++... .
T Consensus 191 ~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~ 269 (428)
T PRK01029 191 TWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI 269 (428)
T ss_pred eEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCC
Confidence 59999975 32 33333 468888988775432 2223344556899999988886553 23 2334665431 1
Q ss_pred ccceeeecCCCCceeEE-EeeCCCEEEEEc-CCCc--EEEEEccC-CceeeeeccCCCcceEEEEEeCCCCeEEEEeCC-
Q 028802 71 DCSDRFVGLSPNSVDAL-LKLDEDRVITGS-ENGL--ISLVGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSISHD- 144 (203)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~-~dg~--v~v~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d- 144 (203)
.....+........... |+|+|+.|+..+ .+|. |+++++.. +.....+..+.. .+....|+|||++|+..+.+
T Consensus 270 g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~-~~~~p~wSPDG~~Laf~~~~~ 348 (428)
T PRK01029 270 GKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYR-NSSCPAWSPDGKKIAFCSVIK 348 (428)
T ss_pred CcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCC-CccceeECCCCCEEEEEEcCC
Confidence 12223332022233445 999999888765 4564 44445432 233333444323 56788999999998876643
Q ss_pred --CcEEEEeCCCcccC
Q 028802 145 --SMLKLWDLDDILKG 158 (203)
Q Consensus 145 --~~i~iwd~~~~~~~ 158 (203)
..|.+||+.++...
T Consensus 349 g~~~I~v~dl~~g~~~ 364 (428)
T PRK01029 349 GVRQICVYDLATGRDY 364 (428)
T ss_pred CCcEEEEEECCCCCeE
Confidence 46999999877543
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.1e-10 Score=86.60 Aligned_cols=147 Identities=13% Similarity=0.164 Sum_probs=123.0
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeec--CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCc
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS 83 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 83 (203)
+.-.++-|...|.|.+|+...++....+. .|.++|.++.++.+-..|.+++.|+.+..|+... +.....+.. .+..
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~-~~~~~~~~~-~~~~ 146 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE-KVIIRIWKE-QKPL 146 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc-ceeeeeecc-CCCc
Confidence 44567788889999999999998887775 6889999999999889999999999999999864 567777777 7777
Q ss_pred eeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCC-----CCeEEE-EeCCCcEEEEeCCCcc
Q 028802 84 VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHD-----RKFLGS-ISHDSMLKLWDLDDIL 156 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~-~~~d~~i~iwd~~~~~ 156 (203)
+.++ .+|++..+++++ +.|.+||+++++.+.+|++|.. +|.+++|.-+ |.++++ ...+.-|.+|-+....
T Consensus 147 ~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~ 223 (541)
T KOG4547|consen 147 VSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGS-PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKED 223 (541)
T ss_pred cceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCc-ceEEEEEEEeccccccceeeeccccccceeEEEEEccc
Confidence 8888 799999998887 4799999999999999999965 9999999876 666654 4467789999877643
Q ss_pred c
Q 028802 157 K 157 (203)
Q Consensus 157 ~ 157 (203)
.
T Consensus 224 k 224 (541)
T KOG4547|consen 224 K 224 (541)
T ss_pred c
Confidence 3
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.8e-09 Score=83.19 Aligned_cols=146 Identities=15% Similarity=0.158 Sum_probs=101.8
Q ss_pred CCEE-EEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCcee
Q 028802 7 AMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (203)
Q Consensus 7 ~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~ 85 (203)
++++ ++-..++.|.|.|..+.+.+..+......-..+.++||++++++++.||.|.++|+.+ .+.+..+.. .....
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~-~~~v~~i~~--G~~~~ 81 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLAT-GKVVATIKV--GGNPR 81 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTS-SSEEEEEE---SSEEE
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCc-ccEEEEEec--CCCcc
Confidence 3444 4556789999999999999999986555445678999999999999999999999985 467777765 34456
Q ss_pred EE-EeeCCCEEEEEc-CCCcEEEEEccCCceeeeeccC------CCcceEEEEEeCCCCeEEEEe-CCCcEEEEeCCCc
Q 028802 86 AL-LKLDEDRVITGS-ENGLISLVGILPNRIIQPIAEH------SEYPIESLALSHDRKFLGSIS-HDSMLKLWDLDDI 155 (203)
Q Consensus 86 ~~-~~~~~~~l~~~~-~dg~v~v~d~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~ 155 (203)
.+ ++++|+++++++ ..+.+.++|.++.+++..+... ...++..+..+|....++..- ..+.|.+-|....
T Consensus 82 ~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~ 160 (369)
T PF02239_consen 82 GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP 160 (369)
T ss_dssp EEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred eEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence 66 899999999887 4789999999999888877543 123577888888888555554 4577877786654
|
... |
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-10 Score=92.84 Aligned_cols=153 Identities=12% Similarity=0.058 Sum_probs=112.6
Q ss_pred cccc-cCCEEEEEcCCCeEEEEEcCCC--------eEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc
Q 028802 2 TFAA-DAMKLLGTSGDGTLSVCNLRKN--------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC 72 (203)
Q Consensus 2 ~~sp-~~~~l~~~~~d~~i~v~d~~~~--------~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 72 (203)
+|.| +-..+++|+..|.|..-+-... +....+..|.++|+.+.++|-+..++.++.|.++++|.......+
T Consensus 354 ~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~P 433 (555)
T KOG1587|consen 354 KFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASP 433 (555)
T ss_pred eeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCc
Confidence 4444 3456889999999987544322 112345568899999999998776666566999999987633455
Q ss_pred ceeeecCCCCceeEE-EeeCC-CEEEEEcCCCcEEEEEccCC--ceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEE
Q 028802 73 SDRFVGLSPNSVDAL-LKLDE-DRVITGSENGLISLVGILPN--RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLK 148 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~-~~l~~~~~dg~v~v~d~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 148 (203)
+..+.. +...++++ |+|.. ..|+++..+|.|.+||+... .++...... ....+.+.|++.|+.|++|...|++.
T Consensus 434 l~~~~~-~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~ 511 (555)
T KOG1587|consen 434 LLSLDS-SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTH 511 (555)
T ss_pred chhhhh-ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEE
Confidence 556666 67778999 99965 56677778999999999743 344444444 23677888999999999999999999
Q ss_pred EEeCCCcc
Q 028802 149 LWDLDDIL 156 (203)
Q Consensus 149 iwd~~~~~ 156 (203)
+|++....
T Consensus 512 ~~~l~~~l 519 (555)
T KOG1587|consen 512 ILKLSESL 519 (555)
T ss_pred EEEcCchh
Confidence 99997544
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-10 Score=90.61 Aligned_cols=153 Identities=12% Similarity=0.198 Sum_probs=116.2
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeec------CCcc-----cEEEEEEeeCCCEEEEecCCCeEEEEEcCCcc
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE------FSEE-----ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK 70 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~------~~~~-----~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~ 70 (203)
..++-..+|++|+.+|.|..||.++...+.++. .|.+ .|+++.|+.+|-.+++|+..|.+.+||++...
T Consensus 182 ~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 182 SINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK 261 (703)
T ss_pred eecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC
Confidence 456777889999999999999998765554443 2333 38999999999999999999999999999754
Q ss_pred ccceeeecCCCCceeEE-EeeC--CCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcE
Q 028802 71 DCSDRFVGLSPNSVDAL-LKLD--EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSML 147 (203)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~~--~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 147 (203)
..+..-.. ..-++..+ |.+. ++.+++ .....++|||-.+|+....+... . .+..+++-|++-.++++-.+..+
T Consensus 262 pl~~kdh~-~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt-~-~lND~C~~p~sGm~f~Ane~~~m 337 (703)
T KOG2321|consen 262 PLLVKDHG-YELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEPT-S-DLNDFCFVPGSGMFFTANESSKM 337 (703)
T ss_pred ceeecccC-CccceeeecccccCCCceEEe-cchHHhhhcccccCCceeecccc-C-CcCceeeecCCceEEEecCCCcc
Confidence 44433333 45567777 7443 344444 44567999999999998777654 3 58999999999999999999999
Q ss_pred EEEeCCCcccC
Q 028802 148 KLWDLDDILKG 158 (203)
Q Consensus 148 ~iwd~~~~~~~ 158 (203)
..|-+...-+.
T Consensus 338 ~~yyiP~LGPa 348 (703)
T KOG2321|consen 338 HTYYIPSLGPA 348 (703)
T ss_pred eeEEccccCCC
Confidence 88887765443
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.1e-10 Score=82.35 Aligned_cols=148 Identities=14% Similarity=0.130 Sum_probs=99.1
Q ss_pred cccccCCEE-EEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEE-EEecCCCeEEEEEcCCccccceeeecC
Q 028802 2 TFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
.|..+.-++ .....++.|.+|++...+-...+.....++.++.|+|+|+.+ .++..+-.|.||.+.+.. ...+.-
T Consensus 55 eW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~--~~~~~~- 131 (447)
T KOG4497|consen 55 EWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK--GYLLPH- 131 (447)
T ss_pred eeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce--eEEecc-
Confidence 355555544 344668899999999988888998888999999999999655 556678999999997532 222222
Q ss_pred CCCceeEE-EeeCCCEEEEEcCC------------------------------------CcEEEEEccCCceeeeeccCC
Q 028802 80 SPNSVDAL-LKLDEDRVITGSEN------------------------------------GLISLVGILPNRIIQPIAEHS 122 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d------------------------------------g~v~v~d~~~~~~~~~~~~~~ 122 (203)
....+..+ |+|+|++.+.++.. ..+.|||---.-.+..+ +.
T Consensus 132 pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY--e~ 209 (447)
T KOG4497|consen 132 PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY--ER 209 (447)
T ss_pred cccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee--ee
Confidence 23344555 78888877765432 12333331111111112 22
Q ss_pred CcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 123 EYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 123 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
+-.+..++|+|.+++|+.|+.|+.++|.+--+
T Consensus 210 ~lG~k~v~wsP~~qflavGsyD~~lrvlnh~t 241 (447)
T KOG4497|consen 210 GLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFT 241 (447)
T ss_pred ccceeEEEeccccceEEeeccchhhhhhceee
Confidence 22588999999999999999999998866433
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.6e-10 Score=92.30 Aligned_cols=144 Identities=15% Similarity=0.181 Sum_probs=114.6
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccc-EE---EEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCC
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEE-LT---SVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-i~---~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 81 (203)
+.++++.+..++.+.+|+...+.....+...... .. -+.++++.-++++|+.-+.|.+|+.... ..-..+.+ |.
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d-n~p~~l~G-He 175 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED-NKPIRLKG-HE 175 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc-CCcceecc-cC
Confidence 4567888888899999999888776666543321 11 2234556668888999999999999733 33336888 99
Q ss_pred CceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceee-eeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQ-PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
+.+..+ ++-+|.++++.+.|+.+++|.+.+++... +.-+|+. +++.++|.|+ .+++++.|.+.++|+...
T Consensus 176 G~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsa-Rvw~~~~~~n--~i~t~gedctcrvW~~~~ 247 (967)
T KOG0974|consen 176 GSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSA-RVWACCFLPN--RIITVGEDCTCRVWGVNG 247 (967)
T ss_pred CceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccc-eeEEEEeccc--eeEEeccceEEEEEeccc
Confidence 999999 99999999999999999999999987765 6667855 8999999999 999999999999995543
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.1e-10 Score=85.65 Aligned_cols=125 Identities=10% Similarity=0.063 Sum_probs=102.3
Q ss_pred eecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCC-----ccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEE
Q 028802 32 RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-----FKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLIS 105 (203)
Q Consensus 32 ~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~-----~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~ 105 (203)
.+.+|.+.|..|.|+.++++|++|+.|..+++|.+.. ..+++.....-|...|.|+ |.....++++|..+++|.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 3457889999999999999999999999999999852 1122322222156789999 988889999999999999
Q ss_pred EEEccCCceeeeeccCC-CcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 106 LVGILPNRIIQPIAEHS-EYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 106 v~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+.|+++.+.+..+.... ...|+.+..+|..+.|++.+.++.+.+||.+..+
T Consensus 131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 131 KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ 182 (609)
T ss_pred eeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence 99999988887664332 2379999999999999999999999999998776
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.2e-10 Score=83.39 Aligned_cols=155 Identities=16% Similarity=0.214 Sum_probs=108.2
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeE----EEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcc-ccceee
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTV----QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-DCSDRF 76 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~----~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~ 76 (203)
..+|.+++||++..+....++++..... +... .-...-+.+.+..+...+.++...|.++-+|+-... .....+
T Consensus 69 ~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~ 147 (390)
T KOG3914|consen 69 LTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPI 147 (390)
T ss_pred ccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchh
Confidence 4678899999998888877777764322 2222 122334455666666666665555555555543211 344556
Q ss_pred ecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeee-ccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI-AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
.+ |...+..+ ++||+.+|+++..|..|++-.....-.+..+ .+|+. -|..++.-++ ..|++++.|++|++||+.+
T Consensus 148 lG-hvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~e-FVS~isl~~~-~~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 148 LG-HVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKE-FVSTISLTDN-YLLLSGSGDKTLRLWDITS 224 (390)
T ss_pred hh-hhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHh-heeeeeeccC-ceeeecCCCCcEEEEeccc
Confidence 67 88889999 9999999999999999999776544444444 45766 5888888766 4589999999999999999
Q ss_pred cccCCC
Q 028802 155 ILKGSG 160 (203)
Q Consensus 155 ~~~~~~ 160 (203)
+.+-+.
T Consensus 225 gk~L~t 230 (390)
T KOG3914|consen 225 GKLLDT 230 (390)
T ss_pred CCcccc
Confidence 987644
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.6e-09 Score=84.31 Aligned_cols=152 Identities=19% Similarity=0.157 Sum_probs=118.2
Q ss_pred cccCCEEEEEcCCCeEEEEEcCCCeEEEeecC---CcccEEEEEEee--------------------CCCEEEEecCCCe
Q 028802 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF---SEEELTSVVLMK--------------------NGRKVVCGSQSGT 60 (203)
Q Consensus 4 sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---~~~~i~~l~~~~--------------------~~~~l~~~~~d~~ 60 (203)
.|-+.++|....||.+++|+...++....+.. -.+..++..|.- +...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 45567899999999999999999887766642 123344444431 1235677888899
Q ss_pred EEEEEcCCccccceeee-cCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeE
Q 028802 61 VLLYSWGYFKDCSDRFV-GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFL 138 (203)
Q Consensus 61 i~v~d~~~~~~~~~~~~-~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 138 (203)
|.+|++.. ++.-..+. +-|.+.+.++ ++.+-..|.+++.|+.+..|+....+.+..+.+... .+.+++.+|||..|
T Consensus 82 v~~ys~~~-g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~-~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAG-GEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP-LVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEecC-CeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCC-ccceEEEcCCCCEE
Confidence 99999964 45444443 2278889998 788888999999999999999999999988888755 78999999999999
Q ss_pred EEEeCCCcEEEEeCCCcccCC
Q 028802 139 GSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 139 ~~~~~d~~i~iwd~~~~~~~~ 159 (203)
++++ +.|++||+.+.+.-.
T Consensus 160 ~~as--~~ik~~~~~~kevv~ 178 (541)
T KOG4547|consen 160 LTAS--RQIKVLDIETKEVVI 178 (541)
T ss_pred Eecc--ceEEEEEccCceEEE
Confidence 9886 789999999887543
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-09 Score=85.88 Aligned_cols=147 Identities=17% Similarity=0.164 Sum_probs=94.8
Q ss_pred cccccCCEEEE-EcCCC--eEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC-CC--eEEEEEcCCcccccee
Q 028802 2 TFAADAMKLLG-TSGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG--TVLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~~~l~~-~~~d~--~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~ 75 (203)
+|||||+.|+. ...++ .|++||+.++... .+..+........|+|+++.|+..+. ++ .|+++++.. +. ...
T Consensus 249 ~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~-g~-~~~ 325 (430)
T PRK00178 249 AWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG-GR-AER 325 (430)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEE
Confidence 69999998874 44444 6889999887653 35445555667899999998876554 33 566777653 22 333
Q ss_pred eecCCCCceeEE-EeeCCCEEEEEcCC-C--cEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCC---CcEE
Q 028802 76 FVGLSPNSVDAL-LKLDEDRVITGSEN-G--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD---SMLK 148 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d-g--~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~ 148 (203)
+.. ........ |+|+|+.|+..... + .|.++|+.+++... +... . ......|+|+|++|+..+.+ ..|.
T Consensus 326 lt~-~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~-~-~~~~p~~spdg~~i~~~~~~~g~~~l~ 401 (430)
T PRK00178 326 VTF-VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDT-S-LDESPSVAPNGTMLIYATRQQGRGVLM 401 (430)
T ss_pred eec-CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCC-C-CCCCceECCCCCEEEEEEecCCceEEE
Confidence 332 22222334 89999999887653 2 58889988876543 3222 1 22356899999998876633 3477
Q ss_pred EEeCCCc
Q 028802 149 LWDLDDI 155 (203)
Q Consensus 149 iwd~~~~ 155 (203)
++++...
T Consensus 402 ~~~~~g~ 408 (430)
T PRK00178 402 LVSINGR 408 (430)
T ss_pred EEECCCC
Confidence 7777543
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.5e-09 Score=85.30 Aligned_cols=147 Identities=16% Similarity=0.120 Sum_probs=96.6
Q ss_pred CcccccCCEEEEE-cCC--CeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC-CC--eEEEEEcCCccccce
Q 028802 1 MTFAADAMKLLGT-SGD--GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG--TVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~-~~d--~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~ 74 (203)
++|+|+|+.|+.. +.+ ..|++|++.++... .+..+........|+|+++.|+..+. .+ .|+++++.. ....
T Consensus 239 ~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~--~~~~ 315 (417)
T TIGR02800 239 PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG--GEVR 315 (417)
T ss_pred eEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC--CCEE
Confidence 3699999977653 443 35899998877543 34444444557789999998876554 33 577777653 2233
Q ss_pred eeecCCCCceeEE-EeeCCCEEEEEcCCC---cEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCC---cE
Q 028802 75 RFVGLSPNSVDAL-LKLDEDRVITGSENG---LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS---ML 147 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~dg---~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~i 147 (203)
.+.. +......+ |+|++++++.++.++ .|.+||+.++... .+... . ......|+|++++|+..+.++ .+
T Consensus 316 ~l~~-~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~-~~~~p~~spdg~~l~~~~~~~~~~~l 391 (417)
T TIGR02800 316 RLTF-RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-G-LDESPSFAPNGRMILYATTRGGRGVL 391 (417)
T ss_pred Eeec-CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-C-CCCCceECCCCCEEEEEEeCCCcEEE
Confidence 4443 34445555 899999999888765 7889998875443 33322 2 245568999999988777543 45
Q ss_pred EEEeCCC
Q 028802 148 KLWDLDD 154 (203)
Q Consensus 148 ~iwd~~~ 154 (203)
++.+...
T Consensus 392 ~~~~~~g 398 (417)
T TIGR02800 392 GLVSTDG 398 (417)
T ss_pred EEEECCC
Confidence 6655443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.7e-08 Score=72.67 Aligned_cols=163 Identities=14% Similarity=0.206 Sum_probs=107.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC-------CcccEEEEEEeeC------CCEEEEecCCCeEEEEEcC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-------SEEELTSVVLMKN------GRKVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-------~~~~i~~l~~~~~------~~~l~~~~~d~~i~v~d~~ 67 (203)
++||||+.+||.+...|+|+++|+....+ ..+.. ....|..+.|.+- ...|++-...|.++-|-+.
T Consensus 49 l~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs 127 (282)
T PF15492_consen 49 LAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVS 127 (282)
T ss_pred EEECCCCcEEEEEcCCCeEEEEeccccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEE
Confidence 58999999999999999999999986433 23321 1245667766642 1246666677877777653
Q ss_pred Cc----cccceee--ecCCCCceeEE-EeeCCCEEEEEcCC----C-------cEEEEEccCCceeee------------
Q 028802 68 YF----KDCSDRF--VGLSPNSVDAL-LKLDEDRVITGSEN----G-------LISLVGILPNRIIQP------------ 117 (203)
Q Consensus 68 ~~----~~~~~~~--~~~~~~~v~~~-~~~~~~~l~~~~~d----g-------~v~v~d~~~~~~~~~------------ 117 (203)
.. ......| ...+...|.++ ++|..++|++|+.. + -+..|-+-++.+...
T Consensus 128 ~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~ 207 (282)
T PF15492_consen 128 VGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITAS 207 (282)
T ss_pred cccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcccccc
Confidence 21 1112222 22135577777 89998888877531 1 245565432211000
Q ss_pred ----------------eccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCCCCcC
Q 028802 118 ----------------IAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNNIS 164 (203)
Q Consensus 118 ----------------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 164 (203)
........|..|.++|||+.||+...+|.|.+|++.+..++..+..+
T Consensus 208 ~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 208 SKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred ccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 01111236899999999999999999999999999999988877664
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.7e-09 Score=85.67 Aligned_cols=147 Identities=15% Similarity=0.144 Sum_probs=92.3
Q ss_pred cccccCCEEEE-EcCCC--eEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC-CC--eEEEEEcCCcccccee
Q 028802 2 TFAADAMKLLG-TSGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG--TVLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~~~l~~-~~~d~--~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~ 75 (203)
+|||||+.|+. .+.++ .|+++|+.+++.. .+..+........|+|+++.|+..+. ++ .|+++|+.. +. ...
T Consensus 268 ~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~-g~-~~~ 344 (448)
T PRK04792 268 RFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS-GK-VSR 344 (448)
T ss_pred eECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEE
Confidence 69999998865 44555 4888898877653 44444555677899999998876553 34 466666643 22 333
Q ss_pred eecCCCCceeEE-EeeCCCEEEEEcCC-C--cEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeC-CC--cEE
Q 028802 76 FVGLSPNSVDAL-LKLDEDRVITGSEN-G--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH-DS--MLK 148 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d-g--~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~ 148 (203)
+.. ........ |+|+|++|+..+.. + .|.++|+.++... .+... . ......|+|+|+.|+..+. ++ .|+
T Consensus 345 Lt~-~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~-~d~~ps~spdG~~I~~~~~~~g~~~l~ 420 (448)
T PRK04792 345 LTF-EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-R-LDESPSVAPNGTMVIYSTTYQGKQVLA 420 (448)
T ss_pred Eec-CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-C-CCCCceECCCCCEEEEEEecCCceEEE
Confidence 332 22222334 89999999887653 3 4666788777653 33322 1 2234589999998876553 33 367
Q ss_pred EEeCCCc
Q 028802 149 LWDLDDI 155 (203)
Q Consensus 149 iwd~~~~ 155 (203)
++++...
T Consensus 421 ~~~~~G~ 427 (448)
T PRK04792 421 AVSIDGR 427 (448)
T ss_pred EEECCCC
Confidence 7776433
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.4e-09 Score=77.13 Aligned_cols=145 Identities=15% Similarity=0.153 Sum_probs=101.4
Q ss_pred EEEEcCCCeEEEEEcCCCeEEEeecCC------cccEEEEEEeeCCCEEEEecCCCeEEEEEcCC-ccccceeeecCCCC
Q 028802 10 LLGTSGDGTLSVCNLRKNTVQTRSEFS------EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-FKDCSDRFVGLSPN 82 (203)
Q Consensus 10 l~~~~~d~~i~v~d~~~~~~~~~~~~~------~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~~ 82 (203)
++-+...|.|.++..........+.+- .....++.|++.+..++++..+|.+.+-+... .-+.++..+. |.-
T Consensus 88 l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~-He~ 166 (339)
T KOG0280|consen 88 LLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKV-HEF 166 (339)
T ss_pred eeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccc-cce
Confidence 444555677777765543333333221 11245788999999999999999988544321 1123346777 888
Q ss_pred ceeEE-Ee-eCCCEEEEEcCCCcEEEEEcc-CCceeee-eccCCCcceEEEEEeC-CCCeEEEEeCCCcEEEEeCCCcc
Q 028802 83 SVDAL-LK-LDEDRVITGSENGLISLVGIL-PNRIIQP-IAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 83 ~v~~~-~~-~~~~~l~~~~~dg~v~v~d~~-~~~~~~~-~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
..+.. |+ .+.+++++|+.|+.+..||++ +++.+.. .+.|+. .|.+|.-+| .+.+|++|+.|..|++||.++..
T Consensus 167 E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~-GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~ 244 (339)
T KOG0280|consen 167 EAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTS-GVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG 244 (339)
T ss_pred eeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeec-ceEEEecCCCCCceEEEeccccceeeeehhccc
Confidence 88877 74 355789999999999999999 5555544 455644 688887776 56799999999999999999654
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.9e-08 Score=77.21 Aligned_cols=152 Identities=14% Similarity=0.225 Sum_probs=97.9
Q ss_pred CcccccCCEEEEEc-CCCeEEEEEcCCCe--EE--Eeec-CCcccEEEEEEeeCCCEEEEecC-CCeEEEEEcCCcccc-
Q 028802 1 MTFAADAMKLLGTS-GDGTLSVCNLRKNT--VQ--TRSE-FSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDC- 72 (203)
Q Consensus 1 l~~sp~~~~l~~~~-~d~~i~v~d~~~~~--~~--~~~~-~~~~~i~~l~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~- 72 (203)
+.|+|++++|++.. ....|++|++.... +. ..+. ......+.++|+|+++++++... ++.|.+|++......
T Consensus 149 v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~ 228 (345)
T PF10282_consen 149 VVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSL 228 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred EEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCce
Confidence 36899999887753 34679999987643 31 2222 33466889999999998876654 788999998722211
Q ss_pred --ceeeecC-----CCCceeEE-EeeCCCEEEEEcC-CCcEEEEEcc--CCce--eeeeccCCCcceEEEEEeCCCCeEE
Q 028802 73 --SDRFVGL-----SPNSVDAL-LKLDEDRVITGSE-NGLISLVGIL--PNRI--IQPIAEHSEYPIESLALSHDRKFLG 139 (203)
Q Consensus 73 --~~~~~~~-----~~~~v~~~-~~~~~~~l~~~~~-dg~v~v~d~~--~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~ 139 (203)
+..+... .......+ ++|+|++|+++.. ...|.+|++. ++.. +..+... +.....++++|+|++|+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~-G~~Pr~~~~s~~g~~l~ 307 (345)
T PF10282_consen 229 TEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG-GKFPRHFAFSPDGRYLY 307 (345)
T ss_dssp EEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES-SSSEEEEEE-TTSSEEE
T ss_pred eEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC-CCCccEEEEeCCCCEEE
Confidence 1222110 11245566 8999999998775 5679999983 3433 3333332 22478999999999998
Q ss_pred EEe-CCCcEEEEeCC
Q 028802 140 SIS-HDSMLKLWDLD 153 (203)
Q Consensus 140 ~~~-~d~~i~iwd~~ 153 (203)
++. .++.|.+|++.
T Consensus 308 Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 308 VANQDSNTVSVFDID 322 (345)
T ss_dssp EEETTTTEEEEEEEE
T ss_pred EEecCCCeEEEEEEe
Confidence 887 66789999763
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-08 Score=80.22 Aligned_cols=148 Identities=17% Similarity=0.142 Sum_probs=96.7
Q ss_pred cccccCCE-EEEEcC---CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEe-cCC--CeEEEEEcCCccccce
Q 028802 2 TFAADAMK-LLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQS--GTVLLYSWGYFKDCSD 74 (203)
Q Consensus 2 ~~sp~~~~-l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~d--~~i~v~d~~~~~~~~~ 74 (203)
.|||+|+. ++..+. ...|+++|+.+++...... ..+......|+|||+.|+.. +.+ ..|+++++.. ....
T Consensus 194 ~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~--g~~~ 270 (419)
T PRK04043 194 KWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT--KTLT 270 (419)
T ss_pred EECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC--CcEE
Confidence 69999985 655433 3579999998886544333 34556678899999877643 333 4677778753 3344
Q ss_pred eeecCCCCceeEE-EeeCCCEEEEEcCC-C--cEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCC------
Q 028802 75 RFVGLSPNSVDAL-LKLDEDRVITGSEN-G--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD------ 144 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d-g--~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------ 144 (203)
.+.. ........ |+|+|+.|+..+.. + .|+++++.+++........ . ....|+|+|++|+.....
T Consensus 271 ~LT~-~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g-~---~~~~~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 271 QITN-YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG-K---NNSSVSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred Eccc-CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC-C---cCceECCCCCEEEEEEcCCCcccC
Confidence 5554 44322233 99999988877643 3 5888888877664433222 1 124899999998866643
Q ss_pred ---CcEEEEeCCCccc
Q 028802 145 ---SMLKLWDLDDILK 157 (203)
Q Consensus 145 ---~~i~iwd~~~~~~ 157 (203)
..|.+.|+.++..
T Consensus 346 ~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 346 KNTFNLYLISTNSDYI 361 (419)
T ss_pred CCCcEEEEEECCCCCe
Confidence 3688888877653
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.5e-09 Score=77.02 Aligned_cols=149 Identities=12% Similarity=0.081 Sum_probs=108.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeE--EEeecCCcccEEEEEEee-CCCEEEEecCCCeEEEEEcCCccccce-ee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV--QTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSD-RF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~ 76 (203)
+.|++.+..++++..+|.+.+-+.....+ ++..+.|...++-..|+. +.+.+++|+.|+.+..||++.++..+. ..
T Consensus 127 lD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~ 206 (339)
T KOG0280|consen 127 LDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNS 206 (339)
T ss_pred EEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecc
Confidence 35788888899998889998666555433 347788999999999876 457889999999999999985444332 24
Q ss_pred ecCCCCceeEE-Ee-eCCCEEEEEcCCCcEEEEEcc-CCceeeeeccCCCcceEEEEEeCCCC--eEEEEeCCCcEEEEe
Q 028802 77 VGLSPNSVDAL-LK-LDEDRVITGSENGLISLVGIL-PNRIIQPIAEHSEYPIESLALSHDRK--FLGSISHDSMLKLWD 151 (203)
Q Consensus 77 ~~~~~~~v~~~-~~-~~~~~l~~~~~dg~v~v~d~~-~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~d~~i~iwd 151 (203)
.. |...|.++ .+ |.+.+|++|+.|-.|++||.+ -++++..-... + .|+.+.++|.-. .|+++-..| .+|-+
T Consensus 207 kv-H~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~-G-GVWRi~~~p~~~~~lL~~CMh~G-~ki~~ 282 (339)
T KOG0280|consen 207 KV-HTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVG-G-GVWRIKHHPEIFHRLLAACMHNG-AKILD 282 (339)
T ss_pred ee-eecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccc-c-ceEEEEecchhhhHHHHHHHhcC-ceEEE
Confidence 45 77888888 44 568899999999999999998 46777555444 3 699999999543 333333333 34544
Q ss_pred CC
Q 028802 152 LD 153 (203)
Q Consensus 152 ~~ 153 (203)
..
T Consensus 283 ~~ 284 (339)
T KOG0280|consen 283 SS 284 (339)
T ss_pred ec
Confidence 43
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.7e-08 Score=76.32 Aligned_cols=144 Identities=11% Similarity=0.093 Sum_probs=115.3
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCC-eEEEEEcCCccccceeeecCCCCce
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSG-TVLLYSWGYFKDCSDRFVGLSPNSV 84 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~-~i~v~d~~~~~~~~~~~~~~~~~~v 84 (203)
+|.+++..++ |...+.+...+..++. ++...|.-..+..+++.++.|..|| .+-+||... ..++.+.. .-+.|
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~--~e~kr~e~-~lg~I 404 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDG--GEVKRIEK-DLGNI 404 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCC--ceEEEeeC-Cccce
Confidence 6788888877 8888888766654432 3556688888888888999999999 899999873 45566776 77889
Q ss_pred eEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCC----CcEEEEeCCCcc
Q 028802 85 DAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD----SMLKLWDLDDIL 156 (203)
Q Consensus 85 ~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~ 156 (203)
.++ .+|+|++++++.....|.++|+.++.....-+...+ -|+.+.|+|+++++|-+--+ ..|+++|+.++.
T Consensus 405 ~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~-lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 405 EAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYG-LITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred EEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccc-eeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence 999 899999999999999999999999987655544433 79999999999999966544 468999988754
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.4e-08 Score=74.34 Aligned_cols=153 Identities=14% Similarity=0.166 Sum_probs=102.8
Q ss_pred CcccccCCEEEEEcC----CCeEEEEEcCC--CeE--EEeecCCcccEEEEEEeeCCCEEEEecC-CCeEEEEEcCCccc
Q 028802 1 MTFAADAMKLLGTSG----DGTLSVCNLRK--NTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~----d~~i~v~d~~~--~~~--~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d~~i~v~d~~~~~~ 71 (203)
|+++|++++|+++.. .+.|..|.+.. +.+ +............++++|++++|+++.. .|.+.++++...+.
T Consensus 42 l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~ 121 (345)
T PF10282_consen 42 LAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGS 121 (345)
T ss_dssp EEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSE
T ss_pred EEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcc
Confidence 468999999988765 57899998875 333 3333323455668999999999998874 89999999975433
Q ss_pred ccee---ee----c----C-CCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCc--e--eeeeccCCCcceEEEEEeC
Q 028802 72 CSDR---FV----G----L-SPNSVDAL-LKLDEDRVITGSE-NGLISLVGILPNR--I--IQPIAEHSEYPIESLALSH 133 (203)
Q Consensus 72 ~~~~---~~----~----~-~~~~v~~~-~~~~~~~l~~~~~-dg~v~v~d~~~~~--~--~~~~~~~~~~~i~~~~~~~ 133 (203)
.... +. + + ......++ ++|+++++++... ...|++|++.... . ...+....+.....++|+|
T Consensus 122 l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p 201 (345)
T PF10282_consen 122 LGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP 201 (345)
T ss_dssp EEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T
T ss_pred cceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC
Confidence 3222 11 0 0 11234556 8999998887654 4579999987654 2 2233334344688999999
Q ss_pred CCCeEEEEe-CCCcEEEEeCC
Q 028802 134 DRKFLGSIS-HDSMLKLWDLD 153 (203)
Q Consensus 134 ~~~~l~~~~-~d~~i~iwd~~ 153 (203)
+++++++.. .++.|.+|++.
T Consensus 202 dg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 202 DGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp TSSEEEEEETTTTEEEEEEEE
T ss_pred CcCEEEEecCCCCcEEEEeec
Confidence 999987666 67889999887
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.9e-08 Score=72.81 Aligned_cols=154 Identities=13% Similarity=0.163 Sum_probs=107.0
Q ss_pred CcccccCCEEEEEcC---CCeEEEEEcCC--CeE--EEeecCCcccEEEEEEeeCCCEEEEecC-CCeEEEEEcCCcccc
Q 028802 1 MTFAADAMKLLGTSG---DGTLSVCNLRK--NTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDC 72 (203)
Q Consensus 1 l~~sp~~~~l~~~~~---d~~i~v~d~~~--~~~--~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~ 72 (203)
|+|+|++++|+++.. .|.|-.|.+.. |.+ +........+...+++++++++|+++.. .|.|.++.++..+.+
T Consensus 45 l~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l 124 (346)
T COG2706 45 LAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSL 124 (346)
T ss_pred EEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCcc
Confidence 579999999988754 46777777664 543 2222333445588999999999998875 589999998754433
Q ss_pred cee--eecCCCCc----------eeEE-EeeCCCEEEEEcC-CCcEEEEEccCCceeee--eccCCCcceEEEEEeCCCC
Q 028802 73 SDR--FVGLSPNS----------VDAL-LKLDEDRVITGSE-NGLISLVGILPNRIIQP--IAEHSEYPIESLALSHDRK 136 (203)
Q Consensus 73 ~~~--~~~~~~~~----------v~~~-~~~~~~~l~~~~~-dg~v~v~d~~~~~~~~~--~~~~~~~~i~~~~~~~~~~ 136 (203)
... +.. |.+. +... ++|+++++++... .-.|.+|++..|+.... .....+.....|+|+|+++
T Consensus 125 ~~~v~~~~-h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k 203 (346)
T COG2706 125 QPVVQVVK-HTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGK 203 (346)
T ss_pred ccceeeee-cCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCc
Confidence 222 111 3333 5555 8999999998764 23589999987754322 1112234578999999999
Q ss_pred eEEEEe-CCCcEEEEeCCCc
Q 028802 137 FLGSIS-HDSMLKLWDLDDI 155 (203)
Q Consensus 137 ~l~~~~-~d~~i~iwd~~~~ 155 (203)
+....+ .+++|.+|.....
T Consensus 204 ~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 204 YAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred EEEEEeccCCEEEEEEEcCC
Confidence 987766 6899999998774
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.7e-08 Score=85.23 Aligned_cols=156 Identities=12% Similarity=0.094 Sum_probs=102.8
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCCeEEEeecC---------------CcccEEEEEEeeCCCEEE-EecCCCeEEE
Q 028802 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEF---------------SEEELTSVVLMKNGRKVV-CGSQSGTVLL 63 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---------------~~~~i~~l~~~~~~~~l~-~~~~d~~i~v 63 (203)
|+|+| ++..+++.+.++.|++|+..++.... +.+ .-.....|+++|++..|+ +-..++.|++
T Consensus 688 Va~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv 766 (1057)
T PLN02919 688 VCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRA 766 (1057)
T ss_pred EEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEE
Confidence 46778 45555666778899999987764421 111 012356799999998554 5556789999
Q ss_pred EEcCCccccce------------eeec-------CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccC--
Q 028802 64 YSWGYFKDCSD------------RFVG-------LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEH-- 121 (203)
Q Consensus 64 ~d~~~~~~~~~------------~~~~-------~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~-- 121 (203)
||+.+....+. .+-. ..-.....+ ++++|.++++-..++.|++||..++.........
T Consensus 767 ~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~ 846 (1057)
T PLN02919 767 LDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKA 846 (1057)
T ss_pred EECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCc
Confidence 99864321110 0000 000123455 7899998888888999999998876554322100
Q ss_pred ----------CCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028802 122 ----------SEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 122 ----------~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
.-.....++++++|+.+++.+.++.|++||+.+...
T Consensus 847 G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 847 GFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 001467899999999888888999999999988653
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.7e-09 Score=79.24 Aligned_cols=135 Identities=9% Similarity=0.090 Sum_probs=98.6
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEe-cCCCeEEEEEcCCccccceeeecCC
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
.|||+|+++|++++- .+.|-|..+-+..+.+.. -..|..+.|..+..+++++ ..++.|.+|++.. .+-...+.. .
T Consensus 15 ~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Q-pew~ckIde-g 90 (447)
T KOG4497|consen 15 SFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQ-PEWYCKIDE-G 90 (447)
T ss_pred eECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeec-ceeEEEecc-C
Confidence 699999999999875 788888877665544443 3567788999888776654 5688999999963 233344555 5
Q ss_pred CCceeEE-EeeCCCEEEE-EcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe
Q 028802 81 PNSVDAL-LKLDEDRVIT-GSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~-~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 142 (203)
...+..+ |+|+|+.|+. ..-+-.|.||.+.+.+.... ... ...+..++|+|+|++.+.++
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~p-K~~~kg~~f~~dg~f~ai~s 152 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHP-KTNVKGYAFHPDGQFCAILS 152 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-ccc-ccCceeEEECCCCceeeeee
Confidence 6677777 9999966665 45588899999988665532 222 22578899999999987665
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.8e-10 Score=96.08 Aligned_cols=146 Identities=16% Similarity=0.188 Sum_probs=115.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEec---CCCeEEEEEcCCccccceeee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS---QSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~---~d~~i~v~d~~~~~~~~~~~~ 77 (203)
+.|+.+|+.+..+..||.+.+|.+. +++....+.|........|.. ..+++++ .++.+.+||........-.-+
T Consensus 2257 ~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~ 2333 (2439)
T KOG1064|consen 2257 SRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHT 2333 (2439)
T ss_pred hhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeee
Confidence 4688999999999999999999987 556667788888888888875 5566654 368999999864433322336
Q ss_pred cCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
. |.+..+++ +-|...+|++|+.+|.|.+||++..+.+.+++. ++ ...++++++..|.|+||++....
T Consensus 2334 ~-H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2334 C-HDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred e-cCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccc
Confidence 7 99999999 899999999999999999999998777655543 44 56789999999999999998775
Q ss_pred cCCCC
Q 028802 157 KGSGN 161 (203)
Q Consensus 157 ~~~~~ 161 (203)
....+
T Consensus 2402 ll~~~ 2406 (2439)
T KOG1064|consen 2402 LLHTF 2406 (2439)
T ss_pred hhhcC
Confidence 54443
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.2e-10 Score=79.45 Aligned_cols=97 Identities=15% Similarity=0.270 Sum_probs=78.6
Q ss_pred EEEcCCCeEEEEEcCC--Ce--EEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeE
Q 028802 11 LGTSGDGTLSVCNLRK--NT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 11 ~~~~~d~~i~v~d~~~--~~--~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~ 86 (203)
++|+.+..+..|++.. +. ....+......|..+.+-||++.+++++.|++|+||..++ ..++..++- |...+.+
T Consensus 221 isgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrt-l~pLAVLky-Hsagvn~ 298 (323)
T KOG0322|consen 221 ISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRT-LNPLAVLKY-HSAGVNA 298 (323)
T ss_pred cCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEecc-CCchhhhhh-hhcceeE
Confidence 4455566788888763 22 2222333345688899999999999999999999999986 578888888 9999999
Q ss_pred E-EeeCCCEEEEEcCCCcEEEEEc
Q 028802 87 L-LKLDEDRVITGSENGLISLVGI 109 (203)
Q Consensus 87 ~-~~~~~~~l~~~~~dg~v~v~d~ 109 (203)
+ |+|+..++++++.|+.|.+|++
T Consensus 299 vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 299 VAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEeCCCCchhhhccCCceEEeeec
Confidence 9 9999999999999999999986
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.5e-09 Score=78.76 Aligned_cols=145 Identities=14% Similarity=0.254 Sum_probs=106.8
Q ss_pred EEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCc----cccceeeecCCCCceeE
Q 028802 11 LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----KDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 11 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~----~~~~~~~~~~~~~~v~~ 86 (203)
++.+.+-.|-+-++.+|-. +.+. ..+-|.++.|...++++..|..+|.|..+|++.. +.+...+. |...+++
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly--h~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY--HDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE--cCcchhh
Confidence 3445556677777777632 3333 4566888889888999999999999999999753 23344444 7888888
Q ss_pred E--EeeCCCEEEEEcCCCcEEEEEccCCce---eeeeccCCCc-ceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028802 87 L--LKLDEDRVITGSENGLISLVGILPNRI---IQPIAEHSEY-PIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 87 ~--~~~~~~~l~~~~~dg~v~v~d~~~~~~---~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
+ .--++.++++.+.+|+|.+||++--++ +.++.+|-.. .-.-+...+....+++++.|...+||.++.+..-.
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ 382 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLC 382 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceee
Confidence 8 344788999999999999999986665 7888888432 11123456677888899999999999999776443
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.4e-08 Score=74.81 Aligned_cols=98 Identities=18% Similarity=0.226 Sum_probs=75.1
Q ss_pred EEcCCCeEEEEEcC--CCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE-E
Q 028802 12 GTSGDGTLSVCNLR--KNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-L 88 (203)
Q Consensus 12 ~~~~d~~i~v~d~~--~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~ 88 (203)
.|...|.|.+..+. .-.++.++.+|...+.+++|.|....|+++..|..+.+||+.........+.+ |...+..+ .
T Consensus 170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~g-h~~kV~~l~~ 248 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQG-HNDKVQALSY 248 (404)
T ss_pred ecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeecc-chhhhhhhhh
Confidence 33344444444332 23566788899999999999999999999999999999999754445556677 88888888 4
Q ss_pred eeCCCEEEEEcCCCcEEEEEcc
Q 028802 89 KLDEDRVITGSENGLISLVGIL 110 (203)
Q Consensus 89 ~~~~~~l~~~~~dg~v~v~d~~ 110 (203)
-+--+.+++++.||.|-+|+..
T Consensus 249 ~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 249 AQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred hhhheeeeeccCCCeEEEEecc
Confidence 5566788899999999999974
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.7e-09 Score=54.81 Aligned_cols=39 Identities=36% Similarity=0.635 Sum_probs=35.5
Q ss_pred CceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028802 112 NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 112 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 151 (203)
++++.++.+|.. .|.+++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~-~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSS-SINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSS-SEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCC-cEEEEEEecccccceeeCCCCEEEEEC
Confidence 357788999965 899999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.9e-09 Score=91.63 Aligned_cols=153 Identities=13% Similarity=0.076 Sum_probs=117.5
Q ss_pred cccCCEEEEEcCCCeEEEEEcCCCeEEEeec-CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCC
Q 028802 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (203)
Q Consensus 4 sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 82 (203)
+|...+.++|+.||.|++|....++.+..+. .....|+.+.|+.+|+.+..+..||.+.+|.+. ..+...... |..
T Consensus 2217 Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~--pk~~~s~qc-hnk 2293 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS--PKPYTSWQC-HNK 2293 (2439)
T ss_pred CCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC--Ccceecccc-CCc
Confidence 4666788999999999999998877766554 234889999999999999999999999999986 355555555 665
Q ss_pred ceeEE-EeeCCCEEEEEc---CCCcEEEEEccC--CceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 83 SVDAL-LKLDEDRVITGS---ENGLISLVGILP--NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~---~dg~v~v~d~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
..... |-. ..+++++ .++.+.+||..- +..+ .-..|.+ .++++++.|..+.|++|+.+|.|++||++..+
T Consensus 2294 ~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~-v~~~H~~-gaT~l~~~P~~qllisggr~G~v~l~D~rqrq 2369 (2439)
T KOG1064|consen 2294 ALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSL-VHTCHDG-GATVLAYAPKHQLLISGGRKGEVCLFDIRQRQ 2369 (2439)
T ss_pred cccceeeee--hhhhccccCCCCCcccchhcccCcccce-eeeecCC-CceEEEEcCcceEEEecCCcCcEEEeehHHHH
Confidence 55555 422 4555544 367899999642 2222 2267755 79999999999999999999999999999988
Q ss_pred cCCCCCc
Q 028802 157 KGSGNNI 163 (203)
Q Consensus 157 ~~~~~~~ 163 (203)
.++.+..
T Consensus 2370 l~h~~~~ 2376 (2439)
T KOG1064|consen 2370 LRHTFQA 2376 (2439)
T ss_pred HHHHhhh
Confidence 8876654
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.5e-09 Score=80.55 Aligned_cols=151 Identities=11% Similarity=0.140 Sum_probs=110.0
Q ss_pred cCCEEEEEcCCCeEEEEEcCC-------CeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee-
Q 028802 6 DAMKLLGTSGDGTLSVCNLRK-------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV- 77 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~-------~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~- 77 (203)
+.+.+++++.|.+|++|.++. ..+..+++.|..+|.++.|..+.++++++ ||-|.+||.-. +..+....
T Consensus 746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFi-gr~Laq~~d 822 (1034)
T KOG4190|consen 746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFI-GRLLAQMED 822 (1034)
T ss_pred cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccc-cchhHhhhc
Confidence 456788999999999999874 23556778899999999999988887765 78899999753 34443221
Q ss_pred cC---CCCceeEEEeeCCCEEEEE-cCCCcEEEEEccCCceeeeeccC----CCcceEEEEEeCCCCeEEEEeCCCcEEE
Q 028802 78 GL---SPNSVDALLKLDEDRVITG-SENGLISLVGILPNRIIQPIAEH----SEYPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 78 ~~---~~~~v~~~~~~~~~~l~~~-~~dg~v~v~d~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d~~i~i 149 (203)
.. ..+.|.++-+-+...++.+ +...+|+++|.+.+.....++.- ...-+.+++..+.|++++.+-.+|+|.+
T Consensus 823 apk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~ 902 (1034)
T KOG4190|consen 823 APKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAI 902 (1034)
T ss_pred CcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEE
Confidence 10 2233444434455666665 56789999999987654444321 1235789999999999999999999999
Q ss_pred EeCCCcccCC
Q 028802 150 WDLDDILKGS 159 (203)
Q Consensus 150 wd~~~~~~~~ 159 (203)
.|.+++....
T Consensus 903 LDaR~G~vIN 912 (1034)
T KOG4190|consen 903 LDARNGKVIN 912 (1034)
T ss_pred EecCCCceec
Confidence 9999987443
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.5e-09 Score=53.94 Aligned_cols=39 Identities=15% Similarity=0.267 Sum_probs=36.5
Q ss_pred CeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEE
Q 028802 27 NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65 (203)
Q Consensus 27 ~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d 65 (203)
++++.++.+|...|.+++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 357788999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.3e-08 Score=73.71 Aligned_cols=156 Identities=14% Similarity=0.166 Sum_probs=107.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC-e--EEEeecCC-----cccEEEEEEeeC-CCEEEEecCCCeEEEEEcCCccc
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKN-T--VQTRSEFS-----EEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~-~--~~~~~~~~-----~~~i~~l~~~~~-~~~l~~~~~d~~i~v~d~~~~~~ 71 (203)
+.++.|+..++++ .|=.|.+|++.-. + -+.-++.+ ..-|++..|+|. -+.++.++..|+|++.|++....
T Consensus 170 IS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aL 248 (433)
T KOG1354|consen 170 ISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSAL 248 (433)
T ss_pred eeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhh
Confidence 3567778877776 4578999998632 1 12223322 234788889995 46788888999999999984321
Q ss_pred cce---e------------eecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEc-cCCceeeeeccCCC-----------
Q 028802 72 CSD---R------------FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGI-LPNRIIQPIAEHSE----------- 123 (203)
Q Consensus 72 ~~~---~------------~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~-~~~~~~~~~~~~~~----------- 123 (203)
+.. . |.. -...|..+ |++.|++|++-.. -+|++||+ ...+++.+++.|..
T Consensus 249 Cd~hsKlfEepedp~~rsffse-iIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEn 326 (433)
T KOG1354|consen 249 CDAHSKLFEEPEDPSSRSFFSE-IISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYEN 326 (433)
T ss_pred hcchhhhhccccCCcchhhHHH-HhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhc
Confidence 111 1 111 22356777 9999999988654 47999999 45677777665521
Q ss_pred ---cceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028802 124 ---YPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 124 ---~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
..-..++|+.++.++++|+....+++|++..+..+.
T Consensus 327 D~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d 365 (433)
T KOG1354|consen 327 DAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKED 365 (433)
T ss_pred cchhheeEEEEcCCcceEecccccceEEEecCCCCccee
Confidence 123457899999999999999999999987666554
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.2e-07 Score=74.53 Aligned_cols=146 Identities=13% Similarity=0.100 Sum_probs=92.5
Q ss_pred cccccCCEEEEE-cC--CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC-CC--eEEEEEcCCcccccee
Q 028802 2 TFAADAMKLLGT-SG--DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG--TVLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~~~l~~~-~~--d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~ 75 (203)
.|||||+.|+.. +. +..|+++++.++... .+..+........|+|||+.|+..+. .+ .|++.|+.. +.. +.
T Consensus 239 ~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~-g~~-~r 315 (419)
T PRK04043 239 DVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS-GSV-EQ 315 (419)
T ss_pred EECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC-CCe-Ee
Confidence 599999877654 32 357888898877643 34433333445689999988776653 33 577777753 232 22
Q ss_pred eecCCCCceeEEEeeCCCEEEEEcCC---------CcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeC---
Q 028802 76 FVGLSPNSVDALLKLDEDRVITGSEN---------GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH--- 143 (203)
Q Consensus 76 ~~~~~~~~v~~~~~~~~~~l~~~~~d---------g~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--- 143 (203)
+.. .... ...|+|+|+.|+..... ..|.++|+.++... .+... . ......|+|||+.|+....
T Consensus 316 lt~-~g~~-~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~-~~~~p~~SPDG~~I~f~~~~~~ 390 (419)
T PRK04043 316 VVF-HGKN-NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-G-VNQFPRFSSDGGSIMFIKYLGN 390 (419)
T ss_pred Ccc-CCCc-CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-C-CcCCeEECCCCCEEEEEEccCC
Confidence 322 1111 22389999999877653 36888898877654 34333 2 2345789999998876553
Q ss_pred CCcEEEEeCCCc
Q 028802 144 DSMLKLWDLDDI 155 (203)
Q Consensus 144 d~~i~iwd~~~~ 155 (203)
...|.+.++...
T Consensus 391 ~~~L~~~~l~g~ 402 (419)
T PRK04043 391 QSALGIIRLNYN 402 (419)
T ss_pred cEEEEEEecCCC
Confidence 234777777654
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.6e-07 Score=68.17 Aligned_cols=156 Identities=17% Similarity=0.216 Sum_probs=103.6
Q ss_pred CcccccCCEEEEEc-C-CCeEEEEEcCCCeEEEeecCCcc-------------------------------cEEEE----
Q 028802 1 MTFAADAMKLLGTS-G-DGTLSVCNLRKNTVQTRSEFSEE-------------------------------ELTSV---- 43 (203)
Q Consensus 1 l~~sp~~~~l~~~~-~-d~~i~v~d~~~~~~~~~~~~~~~-------------------------------~i~~l---- 43 (203)
+++||||++|++.. . +..|-+.|+.+++.+..+..... .+...
T Consensus 110 ~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~ 189 (352)
T TIGR02658 110 TSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFH 189 (352)
T ss_pred EEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeec
Confidence 36899999998765 3 68899999988766654432100 01111
Q ss_pred ----------EEee-CCCEEEEecCCCeEEEEEcCCc----cccceeeec------CCCCceeEE-EeeCCCEEEEEcC-
Q 028802 44 ----------VLMK-NGRKVVCGSQSGTVLLYSWGYF----KDCSDRFVG------LSPNSVDAL-LKLDEDRVITGSE- 100 (203)
Q Consensus 44 ----------~~~~-~~~~l~~~~~d~~i~v~d~~~~----~~~~~~~~~------~~~~~v~~~-~~~~~~~l~~~~~- 100 (203)
.+.+ ++.+++++.. |.|++.|+... ...+..+.. +..+....+ ++|+++.++....
T Consensus 190 ~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~ 268 (352)
T TIGR02658 190 PEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQ 268 (352)
T ss_pred CCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecC
Confidence 1123 6666666665 88999986421 122222211 112223336 8999998888431
Q ss_pred ---------CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCC-eEEEEe-CCCcEEEEeCCCcccCC
Q 028802 101 ---------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSIS-HDSMLKLWDLDDILKGS 159 (203)
Q Consensus 101 ---------dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~d~~i~iwd~~~~~~~~ 159 (203)
.+.|.++|..+++.+..+... . .+..++++||++ +|++.. .++.|.++|+.+++...
T Consensus 269 ~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-~-~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 269 RAKWTHKTASRFLFVVDAKTGKRLRKIELG-H-EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred CccccccCCCCEEEEEECCCCeEEEEEeCC-C-ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence 247999999999999888765 3 689999999999 777666 67889999999886543
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.8e-09 Score=76.84 Aligned_cols=128 Identities=18% Similarity=0.306 Sum_probs=97.9
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCC-----eEEEeecCCcccEEEEEEee-CCCEEEEecCCCeEEEEEcCCcccc---
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKN-----TVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDC--- 72 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~-----~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~--- 72 (203)
.|...++++..|.++|.|.++|++.. .+...+ -|.+.|+++.... ++++|++++.+|.|++||++.. ++
T Consensus 259 Qf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~-K~~~~ 336 (425)
T KOG2695|consen 259 QFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT-KCKKS 336 (425)
T ss_pred HhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhh-hcccc
Confidence 35566789999999999999999864 233333 4778899998776 7889999999999999999853 33
Q ss_pred ceeeecCCCCceeEE---EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCC---cceEEEEEe
Q 028802 73 SDRFVGLSPNSVDAL---LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE---YPIESLALS 132 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~---~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~---~~i~~~~~~ 132 (203)
+..+.+ |.+...-+ ..+....|++++.|...++|.+..|..+.++..... ..+.+++|.
T Consensus 337 V~qYeG-HvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 337 VMQYEG-HVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred eeeeec-ccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 677777 77665544 477788899999999999999999998888765422 134455553
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.8e-09 Score=83.60 Aligned_cols=152 Identities=16% Similarity=0.181 Sum_probs=116.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC---------------eEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEE
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKN---------------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~---------------~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d 65 (203)
++|+....++++|+.||.++|..+.+. ..-+++.+|...|.-+.|+.+.+.|.++..+|.|.||-
T Consensus 20 ~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWm 99 (1189)
T KOG2041|consen 20 AEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWM 99 (1189)
T ss_pred EEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEe
Confidence 368888999999999999999987642 12246789999999999999999999999999999998
Q ss_pred cCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCcee-eeeccCCCcceEEEEEeCCCCeEEEEeC
Q 028802 66 WGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRII-QPIAEHSEYPIESLALSHDRKFLGSISH 143 (203)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 143 (203)
+-...-+...+..+....|.++ |+.+|..|...-.||.|.|=.+...+.. ..+.+. ....+.|++|.+.++.+-.
T Consensus 100 lykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~---~l~hv~ws~D~~~~Lf~~a 176 (1189)
T KOG2041|consen 100 LYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ---LLAHVLWSEDLEQALFKKA 176 (1189)
T ss_pred eecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchh---eccceeecccHHHHHhhhc
Confidence 8643222233333256678888 9999999999999999988776643332 122222 3567899999988888888
Q ss_pred CCcEEEEeCCCc
Q 028802 144 DSMLKLWDLDDI 155 (203)
Q Consensus 144 d~~i~iwd~~~~ 155 (203)
.|.+.+||....
T Consensus 177 nge~hlydnqgn 188 (1189)
T KOG2041|consen 177 NGETHLYDNQGN 188 (1189)
T ss_pred CCcEEEeccccc
Confidence 899999986443
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.3e-07 Score=72.64 Aligned_cols=134 Identities=16% Similarity=0.107 Sum_probs=101.9
Q ss_pred cccCCEEEEEcCCC-eEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCC
Q 028802 4 AADAMKLLGTSGDG-TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (203)
Q Consensus 4 sp~~~~l~~~~~d~-~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 82 (203)
..+++-++.|..|| .|-|++..+++. ..+...-+.|.++..+++|++++++.....+-+.|+.+. .....-.+ ..+
T Consensus 368 ~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididng-nv~~idkS-~~~ 444 (668)
T COG4946 368 QVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNG-NVRLIDKS-EYG 444 (668)
T ss_pred ccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCC-CeeEeccc-ccc
Confidence 34556788888998 899999998865 445556788999999999999999999899999999863 33333333 566
Q ss_pred ceeEE-EeeCCCEEEEEcCCC----cEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe
Q 028802 83 SVDAL-LKLDEDRVITGSENG----LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~dg----~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 142 (203)
-|..+ |+|++++|+.+--+| .|++||+..++....-+.. . -=.+-+|.|++++|...+
T Consensus 445 lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~t-a-~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 445 LITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPT-A-YDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred eeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCc-c-cccCcccCCCCcEEEEEe
Confidence 78888 999999999887654 5899999887766443322 2 235678999999987554
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.7e-09 Score=77.61 Aligned_cols=100 Identities=9% Similarity=0.086 Sum_probs=75.2
Q ss_pred CeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEEEeeCCCEEE
Q 028802 17 GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVI 96 (203)
Q Consensus 17 ~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~ 96 (203)
..+.+|....+. ...+.+|-+.++.++|+||+++++++..|..|++-........-.-+.+ |..-|..+.-.++..|+
T Consensus 132 ~~~di~s~~~~~-~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclG-H~eFVS~isl~~~~~Ll 209 (390)
T KOG3914|consen 132 YSFDILSADSGR-CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLG-HKEFVSTISLTDNYLLL 209 (390)
T ss_pred eeeeeecccccC-cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccc-cHhheeeeeeccCceee
Confidence 344455544432 2345588999999999999999999999999999777543223333467 88888888444556699
Q ss_pred EEcCCCcEEEEEccCCceeeee
Q 028802 97 TGSENGLISLVGILPNRIIQPI 118 (203)
Q Consensus 97 ~~~~dg~v~v~d~~~~~~~~~~ 118 (203)
+++.|++|++||+.+|+++.++
T Consensus 210 S~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 210 SGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred ecCCCCcEEEEecccCCccccc
Confidence 9999999999999999876554
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.4e-07 Score=76.46 Aligned_cols=151 Identities=13% Similarity=0.106 Sum_probs=115.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCC------------CEEEEecCCCeEEEEEcCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG------------RKVVCGSQSGTVLLYSWGY 68 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~------------~~l~~~~~d~~i~v~d~~~ 68 (203)
+.|+|.| +||.|+. ..|.|.|..+-+.++.++.|...|+.+.|.|-. -.|+++...|.|.+||+..
T Consensus 21 ~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~ 98 (1062)
T KOG1912|consen 21 ADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVL 98 (1062)
T ss_pred cccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehh
Confidence 3577766 6777765 689999999999999999999999999999731 1466777889999999975
Q ss_pred ccccceeeecCCCCceeEE-Ee---eCC-CEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeC-CCCeEEEEe
Q 028802 69 FKDCSDRFVGLSPNSVDAL-LK---LDE-DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH-DRKFLGSIS 142 (203)
Q Consensus 69 ~~~~~~~~~~~~~~~v~~~-~~---~~~-~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~ 142 (203)
...+..+.. +..++..+ |- ++. .+++.-.....|.+|+..+|+.......... ...++.+.| |.+.+...+
T Consensus 99 -~s~~~~l~~-~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~-iLs~f~~DPfd~rh~~~l~ 175 (1062)
T KOG1912|consen 99 -ASVINWLSH-SNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE-ILSCFRVDPFDSRHFCVLG 175 (1062)
T ss_pred -hhhhhhhcC-CCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCc-ceeeeeeCCCCcceEEEEc
Confidence 445555666 67777777 52 344 5666667778899999999999888766544 677789998 667888777
Q ss_pred CCCcEEEEeCCCcc
Q 028802 143 HDSMLKLWDLDDIL 156 (203)
Q Consensus 143 ~d~~i~iwd~~~~~ 156 (203)
..|.+.+-+.-...
T Consensus 176 s~g~vl~~~~l~~s 189 (1062)
T KOG1912|consen 176 SKGFVLSCKDLGLS 189 (1062)
T ss_pred cCceEEEEeccCCC
Confidence 78888777764443
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.7e-09 Score=78.91 Aligned_cols=157 Identities=14% Similarity=0.136 Sum_probs=118.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEee-cCCcccEEEEEEeeC--CCEEEEecCCCeEEEEEcCCccccc--ee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRS-EFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFKDCS--DR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~i~~l~~~~~--~~~l~~~~~d~~i~v~d~~~~~~~~--~~ 75 (203)
|-|+..|..|++|+.|..|.+||...+.....+ .+|...|....|.|. -+.+++++.||.+++=.+...+.+. ..
T Consensus 148 V~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~r 227 (559)
T KOG1334|consen 148 VHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKR 227 (559)
T ss_pred eeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceeccee
Confidence 357888999999999999999999887766555 477778888888884 4678999999999998776443332 34
Q ss_pred eecCCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCCceeeeec--cCCC---cceEEEEEeCCCC-eEEEEeCCCcE
Q 028802 76 FVGLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQPIA--EHSE---YPIESLALSHDRK-FLGSISHDSML 147 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~-~~~l~~~~~dg~v~v~d~~~~~~~~~~~--~~~~---~~i~~~~~~~~~~-~l~~~~~d~~i 147 (203)
+.. |.+++.-+ .-|. ...|++++.|+.+.-+|++++.+...+. .+.. ...+.++.+|-.. .+++++.|..+
T Consensus 228 l~~-h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~ 306 (559)
T KOG1334|consen 228 LAP-HEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFA 306 (559)
T ss_pred ccc-ccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhh
Confidence 455 88888888 5664 4568899999999999998875543332 2212 1467888898665 78999999999
Q ss_pred EEEeCCCcccC
Q 028802 148 KLWDLDDILKG 158 (203)
Q Consensus 148 ~iwd~~~~~~~ 158 (203)
++||.+.....
T Consensus 307 RvYD~R~~~~e 317 (559)
T KOG1334|consen 307 RVYDQRRIDKE 317 (559)
T ss_pred hhhcccchhhc
Confidence 99998876544
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.9e-09 Score=80.75 Aligned_cols=149 Identities=17% Similarity=0.214 Sum_probs=111.7
Q ss_pred cccccC-CEEEEEcCCCeEEEEEcCCC------eEEEeec------CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCC
Q 028802 2 TFAADA-MKLLGTSGDGTLSVCNLRKN------TVQTRSE------FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY 68 (203)
Q Consensus 2 ~~sp~~-~~l~~~~~d~~i~v~d~~~~------~~~~~~~------~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~ 68 (203)
+..|-. ..+++++.|..+++||.+.- ..+..+. .....|++++++.++.-|.++-.|-.|++|.-..
T Consensus 288 a~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~ 367 (559)
T KOG1334|consen 288 AVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSM 367 (559)
T ss_pred ecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccc
Confidence 345543 47889999999999998642 1122221 2345799999998887777777888899984432
Q ss_pred c-c----------ccce-eeecCCCCc--eeEE--EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEe
Q 028802 69 F-K----------DCSD-RFVGLSPNS--VDAL--LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALS 132 (203)
Q Consensus 69 ~-~----------~~~~-~~~~~~~~~--v~~~--~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~ 132 (203)
. + ..+. .+++ |.+. |..+ |-|...++++|+.-|.|.+|+-.+++.+.-+.+... -|.|+.-+
T Consensus 368 ~~G~~p~~~s~~~~~~k~vYKG-HrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~-VVNCLEpH 445 (559)
T KOG1334|consen 368 GDGSEPDPSSPREQYVKRVYKG-HRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH-VVNCLEPH 445 (559)
T ss_pred ccCCCCCCCcchhhccchhhcc-cccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc-eEeccCCC
Confidence 1 1 1122 2556 6543 6666 589999999999999999999999999888887755 78999999
Q ss_pred CCCCeEEEEeCCCcEEEEeC
Q 028802 133 HDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 133 ~~~~~l~~~~~d~~i~iwd~ 152 (203)
|--..||+++-|..|+||-.
T Consensus 446 P~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 446 PHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred CCCchhhccCCccceeeecC
Confidence 99899999999999999975
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.4e-07 Score=79.62 Aligned_cols=162 Identities=12% Similarity=0.141 Sum_probs=112.1
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCC--e-----EEEeecCC-cccEEEE-EEee--CCCEEEEecCCCeEEEEEcCCcc
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKN--T-----VQTRSEFS-EEELTSV-VLMK--NGRKVVCGSQSGTVLLYSWGYFK 70 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~--~-----~~~~~~~~-~~~i~~l-~~~~--~~~~l~~~~~d~~i~v~d~~~~~ 70 (203)
++.+.+..+|+++.||.|++..+... . .......+ .+.+.++ ++.. ....|+.+...+.|..||++...
T Consensus 1105 t~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~ 1184 (1431)
T KOG1240|consen 1105 TMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH 1184 (1431)
T ss_pred EeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh
Confidence 34567889999999999999998752 1 11111111 2233333 3433 22378888889999999998532
Q ss_pred ccce-eeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCC---CeEEEEe--C
Q 028802 71 DCSD-RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR---KFLGSIS--H 143 (203)
Q Consensus 71 ~~~~-~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~--~ 143 (203)
..+. .... ..+.|+++ .+|.+.+++.|+..|.+.+||++-+.++..+......+|..+..+|-. ...++++ .
T Consensus 1185 ~~w~lk~~~-~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~ 1263 (1431)
T KOG1240|consen 1185 DAWRLKNQL-RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSS 1263 (1431)
T ss_pred hHHhhhcCc-cccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccC
Confidence 2221 1222 45678888 799999999999999999999998888877765544578888877743 4555554 4
Q ss_pred CCcEEEEeCCCcccCCCCCcC
Q 028802 144 DSMLKLWDLDDILKGSGNNIS 164 (203)
Q Consensus 144 d~~i~iwd~~~~~~~~~~~~~ 164 (203)
.+.|.+|++.++..+...+..
T Consensus 1264 ~nevs~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1264 NNEVSTWNMETGLRQTVLWAS 1284 (1431)
T ss_pred CCceeeeecccCcceEEEEcC
Confidence 677999999999776665554
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.9e-08 Score=68.81 Aligned_cols=110 Identities=26% Similarity=0.464 Sum_probs=82.4
Q ss_pred CCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEEE--eeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcc
Q 028802 48 NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL--KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP 125 (203)
Q Consensus 48 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~ 125 (203)
-+..+++|+.+|.|++|.....+.....+.. ....+-+++ ..++.+..+++.+|.|+.|++..++.+...-.|...+
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s-~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~ 147 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS-GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFES 147 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhc-ccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCC
Confidence 3567899999999999998755555444444 455555553 3456688899999999999999888887776675346
Q ss_pred eEEEEEeCCCCeEEEE--eCCCcEEEEeCCCcccC
Q 028802 126 IESLALSHDRKFLGSI--SHDSMLKLWDLDDILKG 158 (203)
Q Consensus 126 i~~~~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~ 158 (203)
+.....+..+++|+.. +.|..++.|++......
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d~ 182 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKDE 182 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcchhhhhcc
Confidence 6666777777888877 88999999998776544
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.8e-08 Score=71.61 Aligned_cols=146 Identities=17% Similarity=0.209 Sum_probs=93.0
Q ss_pred CCEEEEEcCCCeEEEEEcCCCe-EEEeecCCcccEEEEEEeeCCCEEEEecC-----CCeEEEEEcCCccccceeeecCC
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNT-VQTRSEFSEEELTSVVLMKNGRKVVCGSQ-----SGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-----d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
++.++++..||.+.+++.+.-. ....+........+.++...++.+.++.. -+..+.|+++..+..+.....
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~-- 178 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA-- 178 (319)
T ss_pred CCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccc--
Confidence 5678888999999999876521 11122211122223334445555554332 235667776532222211121
Q ss_pred CCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCc-eeeeeccCCCcceEEEEEeC-CCCeEEEEeCCCcEEEEeCCCc
Q 028802 81 PNSVDAL-LKL-DEDRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 81 ~~~v~~~-~~~-~~~~l~~~~~dg~v~v~d~~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
...+.++ -+| +.+.+++|+.+|.+-+||.+... +...+..|.. +|+.+.|+| ++..|++++.||.+-.||..+.
T Consensus 179 ~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~-~i~eV~FHpk~p~~Lft~sedGslw~wdas~~ 256 (319)
T KOG4714|consen 179 LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKA-EIWEVHFHPKNPEHLFTCSEDGSLWHWDASTT 256 (319)
T ss_pred cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhh-hhhheeccCCCchheeEecCCCcEEEEcCCCc
Confidence 2237777 466 45667788889999999998753 4455677844 899999999 5678999999999999999853
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=6e-07 Score=64.40 Aligned_cols=148 Identities=10% Similarity=-0.030 Sum_probs=99.3
Q ss_pred EEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee-cCCCCceeEE-
Q 028802 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV-GLSPNSVDAL- 87 (203)
Q Consensus 10 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~v~~~- 87 (203)
+..++.|.++++.++..+.....+-...-.+.++.++++++++++.+....|..|.+....+.+..+. ......-.+.
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S 210 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNS 210 (344)
T ss_pred eeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeee
Confidence 44556677777777664422222211112378899999999999999999999999976555444322 1022222334
Q ss_pred EeeCCCEEEEEcCCCcEEEEEccCCce-----eeeeccCCCcceEEEEEeCCCC--eEEEEeCCCcEEEEeCCCcccC
Q 028802 88 LKLDEDRVITGSENGLISLVGILPNRI-----IQPIAEHSEYPIESLALSHDRK--FLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 88 ~~~~~~~l~~~~~dg~v~v~d~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
|+.....++++..||.+.|||++.... ..+-..| .+++..+.|++-|. .|...-.-+.+.+.|+++...-
T Consensus 211 ~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~h-nGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 211 FSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHH-NGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNH 287 (344)
T ss_pred eccCcceEEEEecCCcEEEEEecccccchhhhcccCCCC-CCceEEEEecCCCcceEEEEecCcceEEEEEcccCcee
Confidence 888889999999999999999986432 1222334 44899999998764 3444445678999999988643
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.8e-07 Score=69.03 Aligned_cols=160 Identities=12% Similarity=0.179 Sum_probs=113.3
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCC----CeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEE---------------
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRK----NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVL--------------- 62 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~----~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~--------------- 62 (203)
.++++...|++|-..|++.-+.+.. ....+....|..++..+.|+.....+++.+.|..+.
T Consensus 75 ~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~ 154 (404)
T KOG1409|consen 75 EYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF 154 (404)
T ss_pred eeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe
Confidence 4567778889998889998887653 233344556777777777776656665555443221
Q ss_pred ------------------------EEEcC-CccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCce-e
Q 028802 63 ------------------------LYSWG-YFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI-I 115 (203)
Q Consensus 63 ------------------------v~d~~-~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~-~ 115 (203)
+-.+. +...++..+.+ |.+.+.++ |.|....+.+|..|..+.+||+.-++- .
T Consensus 155 ~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~-h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~ 233 (404)
T KOG1409|consen 155 ETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNG-HTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTA 233 (404)
T ss_pred eccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcC-cccceEEEEEcCCCcEEEeccccCceEEEeccCCccee
Confidence 11110 01233445667 88889999 899999999999999999999975443 3
Q ss_pred eeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCCCCc
Q 028802 116 QPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNNI 163 (203)
Q Consensus 116 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 163 (203)
..+.+|.. .|..+...+--+.|.+++.||.|.+|++.........+.
T Consensus 234 ~el~gh~~-kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl 280 (404)
T KOG1409|consen 234 YELQGHND-KVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWL 280 (404)
T ss_pred eeeccchh-hhhhhhhhhhheeeeeccCCCeEEEEeccceeecCcccc
Confidence 45667755 788888877778999999999999999988777666554
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.6e-07 Score=69.41 Aligned_cols=151 Identities=14% Similarity=0.225 Sum_probs=99.8
Q ss_pred CcccccCC--EEEEEcCCCeEEEEEcCCCeE-----------------------------------EEee-cCCcccEEE
Q 028802 1 MTFAADAM--KLLGTSGDGTLSVCNLRKNTV-----------------------------------QTRS-EFSEEELTS 42 (203)
Q Consensus 1 l~~sp~~~--~l~~~~~d~~i~v~d~~~~~~-----------------------------------~~~~-~~~~~~i~~ 42 (203)
+.|.++++ .++..+.|.+|++|-+..... .+.+ ..|...|.+
T Consensus 90 Irw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNS 169 (433)
T KOG1354|consen 90 IRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINS 169 (433)
T ss_pred ceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeee
Confidence 35666654 456667889999998753210 0011 136677899
Q ss_pred EEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecC-C-----CCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCce
Q 028802 43 VVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL-S-----PNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRI 114 (203)
Q Consensus 43 l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~-----~~~v~~~-~~~-~~~~l~~~~~dg~v~v~d~~~~~~ 114 (203)
|.++.|...++++. |=.|.+|.+....+....+.-- + ...|++. |+| ..+.++..+..|.|++.|++....
T Consensus 170 IS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aL 248 (433)
T KOG1354|consen 170 ISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSAL 248 (433)
T ss_pred eeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhh
Confidence 99999998888764 6789999986543333322210 1 1346666 888 467888889999999999984211
Q ss_pred ----eeeeccCC-----------CcceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 115 ----IQPIAEHS-----------EYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 115 ----~~~~~~~~-----------~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
...+.... -..|..+.|+++|+|+++-.. -+|++||+.
T Consensus 249 Cd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~n 301 (433)
T KOG1354|consen 249 CDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLN 301 (433)
T ss_pred hcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEecc
Confidence 11111110 025888999999999998764 479999984
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.6e-06 Score=63.38 Aligned_cols=150 Identities=11% Similarity=0.148 Sum_probs=101.1
Q ss_pred cccccCCEEEEEcC-CCeEEEEEcCCCeEEE----eecCCcccEEEEEEeeCCCEEEEecC-CCeEEEEEcCCcccccee
Q 028802 2 TFAADAMKLLGTSG-DGTLSVCNLRKNTVQT----RSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~~~l~~~~~-d~~i~v~d~~~~~~~~----~~~~~~~~i~~l~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~ 75 (203)
.|.|++++|++..- --.|.+|++..|.+.. .+ ......+.|.|+|++++.++.++ +++|.+|........+..
T Consensus 151 ~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~ 229 (346)
T COG2706 151 NFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEE 229 (346)
T ss_pred eeCCCCCEEEEeecCCceEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEE
Confidence 47899999988753 3469999998764422 22 33566789999999999887665 899999998753222222
Q ss_pred eec--------CCCCceeEE-EeeCCCEEEEEcCC-CcEEEEEccC--Ccee--eeeccCCCcceEEEEEeCCCCeEEEE
Q 028802 76 FVG--------LSPNSVDAL-LKLDEDRVITGSEN-GLISLVGILP--NRII--QPIAEHSEYPIESLALSHDRKFLGSI 141 (203)
Q Consensus 76 ~~~--------~~~~~v~~~-~~~~~~~l~~~~~d-g~v~v~d~~~--~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~ 141 (203)
++. ........+ .+|+|++|+++..- ..|.+|.+.. ++.. .....+ +.......|++.+++|+++
T Consensus 230 lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~te-g~~PR~F~i~~~g~~Liaa 308 (346)
T COG2706 230 LQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTE-GQFPRDFNINPSGRFLIAA 308 (346)
T ss_pred eeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccC-CcCCccceeCCCCCEEEEE
Confidence 221 013345666 79999999988763 3577777653 3322 112222 2236788999999999988
Q ss_pred eC-CCcEEEEeCC
Q 028802 142 SH-DSMLKLWDLD 153 (203)
Q Consensus 142 ~~-d~~i~iwd~~ 153 (203)
.. +..|.+|...
T Consensus 309 ~q~sd~i~vf~~d 321 (346)
T COG2706 309 NQKSDNITVFERD 321 (346)
T ss_pred ccCCCcEEEEEEc
Confidence 84 4568888764
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.6e-07 Score=77.25 Aligned_cols=142 Identities=12% Similarity=0.125 Sum_probs=103.9
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC---------CCeEEEEEcCCcccccee
Q 028802 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---------SGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~---------d~~i~v~d~~~~~~~~~~ 75 (203)
.+++++.+|...|+|.+-|..+-+.+.++..|.+.|..+ .-.|+.|++++. |..|+|||+++- ..+..
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf--Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm-ral~P 261 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF--DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMM-RALSP 261 (1118)
T ss_pred ecCcEEEeecccceEEeecCCcCceeeeeeccccceeee--eccCCeEEEeecccccccccccchhhhhhhhhh-hccCC
Confidence 357889999999999999999999999999999988655 557899998875 456899999863 33333
Q ss_pred eecCCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccC-Cce-eeeeccCC-CcceEEEEEeCCCCeEEEEeCCCcEEEE
Q 028802 76 FVGLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILP-NRI-IQPIAEHS-EYPIESLALSHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~-~~~l~~~~~dg~v~v~d~~~-~~~-~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i~iw 150 (203)
+.- +.++ .-+ |+|. ...+++++..|...+.|..+ +.+ ......+. +..+..+.+++++..++.+..+|.|.+|
T Consensus 262 I~~-~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~w 339 (1118)
T KOG1275|consen 262 IQF-PYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLW 339 (1118)
T ss_pred ccc-ccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeee
Confidence 332 2333 333 6775 35677788889999988332 111 22222221 2248999999999999999999999999
Q ss_pred e
Q 028802 151 D 151 (203)
Q Consensus 151 d 151 (203)
-
T Consensus 340 a 340 (1118)
T KOG1275|consen 340 A 340 (1118)
T ss_pred c
Confidence 8
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.5e-08 Score=69.24 Aligned_cols=112 Identities=13% Similarity=0.086 Sum_probs=79.7
Q ss_pred ccEEEEEEeeC-CCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCce
Q 028802 38 EELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRI 114 (203)
Q Consensus 38 ~~i~~l~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~dg~v~v~d~~~~~~ 114 (203)
..|.+++-+|. .+.+++|+.+|.+-+||.++...+...+.. |+..++.+ |+| ++..|+++++||.+..||..+ ..
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~a-hk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~-~~ 257 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKA-HKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST-TF 257 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHH-hhhhhhheeccCCCchheeEecCCCcEEEEcCCC-ce
Confidence 34888888884 466778889999999999976566677788 99999999 988 567899999999999999763 22
Q ss_pred eeeec---cC-----CC-------------cceEEE-EEeCCCCeEEEEeCCCcEEEEe
Q 028802 115 IQPIA---EH-----SE-------------YPIESL-ALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 115 ~~~~~---~~-----~~-------------~~i~~~-~~~~~~~~l~~~~~d~~i~iwd 151 (203)
+..-. .+ .+ ....++ .|.--|..|++|+.-+.|++++
T Consensus 258 l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 258 LSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred EEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 21100 00 00 011122 2445678888888888888875
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-06 Score=62.88 Aligned_cols=140 Identities=8% Similarity=-0.023 Sum_probs=94.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC-eEEEe--ecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee-
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKN-TVQTR--SEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF- 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~-~~~~~--~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~- 76 (203)
++++++++++++.+....|..|.+... +.+.. .......=.+..|+.....++++..||++.|||++....+....
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s 243 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS 243 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc
Confidence 357899999999999999999998753 32222 22223445678899999999999999999999998755444333
Q ss_pred ---ecCCCCceeEE-EeeCCC--EEEEEcCCCcEEEEEccCCceeeeeccCCC-------cceEEEEEeCCCCeEEEE
Q 028802 77 ---VGLSPNSVDAL-LKLDED--RVITGSENGLISLVGILPNRIIQPIAEHSE-------YPIESLALSHDRKFLGSI 141 (203)
Q Consensus 77 ---~~~~~~~v~~~-~~~~~~--~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~l~~~ 141 (203)
.. |.+.++.+ |++.|. +|+..-.-+.++|.|++++.-.+.+.-..+ ..|..-.|+.++..+.+.
T Consensus 244 strp~-hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~ 320 (344)
T KOG4532|consen 244 STRPH-HNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVK 320 (344)
T ss_pred ccCCC-CCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccc
Confidence 23 67889988 998664 344444557899999998876555433211 124555555554444333
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.8e-06 Score=61.32 Aligned_cols=154 Identities=16% Similarity=0.169 Sum_probs=101.2
Q ss_pred cccccCCEEEEEc-----CCCeEEEEEcC-CCeEEEeecCCcccEEEEEEeeCCCEEEEecC-------CC---------
Q 028802 2 TFAADAMKLLGTS-----GDGTLSVCNLR-KNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-------SG--------- 59 (203)
Q Consensus 2 ~~sp~~~~l~~~~-----~d~~i~v~d~~-~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-------d~--------- 59 (203)
.|||||++|++.- ..|.|-|||.. +-..+..+..+.-....+.+.||+..|+++.. .|
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM 136 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTM 136 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhc
Confidence 5899999998863 35889999998 55777888887777888999999988887532 12
Q ss_pred --eEEEEEcCCcccccee--e--ecCCCCceeEE-EeeCCCEEEEEcCCCc-------EEEEEccCCceeeeeccCC---
Q 028802 60 --TVLLYSWGYFKDCSDR--F--VGLSPNSVDAL-LKLDEDRVITGSENGL-------ISLVGILPNRIIQPIAEHS--- 122 (203)
Q Consensus 60 --~i~v~d~~~~~~~~~~--~--~~~~~~~v~~~-~~~~~~~l~~~~~dg~-------v~v~d~~~~~~~~~~~~~~--- 122 (203)
++.+.|..+ +..+.. + .- |...++.+ +.++|..++..-..|. |.++. .+..+..+....
T Consensus 137 ~psL~~ld~~s-G~ll~q~~Lp~~~-~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~ 212 (305)
T PF07433_consen 137 QPSLVYLDARS-GALLEQVELPPDL-HQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQW 212 (305)
T ss_pred CCceEEEecCC-CceeeeeecCccc-cccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHH
Confidence 233334432 344433 2 22 45567777 7888776665544432 22332 233333332211
Q ss_pred ---CcceEEEEEeCCCCeEEEEe-CCCcEEEEeCCCcccCC
Q 028802 123 ---EYPIESLALSHDRKFLGSIS-HDSMLKLWDLDDILKGS 159 (203)
Q Consensus 123 ---~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~ 159 (203)
..-|-+|++++++.++++.+ ..+.+.+||..++....
T Consensus 213 ~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~ 253 (305)
T PF07433_consen 213 RRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLG 253 (305)
T ss_pred HhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEee
Confidence 11488999999998886655 78899999999887543
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.69 E-value=6e-06 Score=71.90 Aligned_cols=153 Identities=14% Similarity=0.049 Sum_probs=96.9
Q ss_pred CcccccCCEEEEEc-CCCeEEEEEcCCCeEEEeecCC-----------------cccEEEEEEee-CCCEEEEecCCCeE
Q 028802 1 MTFAADAMKLLGTS-GDGTLSVCNLRKNTVQTRSEFS-----------------EEELTSVVLMK-NGRKVVCGSQSGTV 61 (203)
Q Consensus 1 l~~sp~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~-----------------~~~i~~l~~~~-~~~~l~~~~~d~~i 61 (203)
|+++++++.|+++. ..+.|+++|+.++.. .++.+. -...+.++++| ++..+++...++.|
T Consensus 629 Iavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I 707 (1057)
T PLN02919 629 LAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQI 707 (1057)
T ss_pred EEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeE
Confidence 45777777666654 456799999877643 222110 11246789999 55666666778899
Q ss_pred EEEEcCCccccceeeec--------------CCCCceeEE-EeeCCCEEEE-EcCCCcEEEEEccCCceeeeecc-----
Q 028802 62 LLYSWGYFKDCSDRFVG--------------LSPNSVDAL-LKLDEDRVIT-GSENGLISLVGILPNRIIQPIAE----- 120 (203)
Q Consensus 62 ~v~d~~~~~~~~~~~~~--------------~~~~~v~~~-~~~~~~~l~~-~~~dg~v~v~d~~~~~~~~~~~~----- 120 (203)
++||.... . +..+.+ ..-.....+ ++|++..|++ -..++.|++||+.++.......+
T Consensus 708 ~v~d~~~g-~-v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~ 785 (1057)
T PLN02919 708 WEYNISDG-V-TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFS 785 (1057)
T ss_pred EEEECCCC-e-EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccC
Confidence 99998532 1 122211 001234456 8999885554 45578999999887653211100
Q ss_pred --------CC-------CcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 121 --------HS-------EYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 121 --------~~-------~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
.. ......++++++|..+++...++.|++||..++.
T Consensus 786 ~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~ 836 (1057)
T PLN02919 786 DNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKR 836 (1057)
T ss_pred cccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCe
Confidence 00 0124588999999988888899999999997664
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.9e-06 Score=67.01 Aligned_cols=76 Identities=20% Similarity=0.181 Sum_probs=61.5
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.+..+.++ ++|+...++.|+.||.|.+||...+....+ + . ....+.++|+|+|..+++|+..|.|.+||+.-....
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k-a-~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~ 334 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-K-A-EFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIK 334 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-e-e-cccceEEEEcCCCcEEEEEcCCceEEEEEeecCccc
Confidence 45567777 899999999999999999999876533322 2 2 236788999999999999999999999998766544
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.3e-05 Score=58.65 Aligned_cols=136 Identities=15% Similarity=0.170 Sum_probs=89.0
Q ss_pred CcccccCCEEEEEcCC--------CeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEE-EecCCCeEEEEEcCCccc
Q 028802 1 MTFAADAMKLLGTSGD--------GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d--------~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~-~~~~d~~i~v~d~~~~~~ 71 (203)
+++.|+|++.++.... |.|..++.. ++...... .-...+.|+|+|+++.|+ +-+..+.|..|++.....
T Consensus 91 ~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~ 168 (246)
T PF08450_consen 91 VAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGG 168 (246)
T ss_dssp EEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTC
T ss_pred EEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEecccccc
Confidence 3678889876665433 557777776 54433332 245578999999998776 556688899999864332
Q ss_pred cc---eee---ecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEe-CCCCeEEEE
Q 028802 72 CS---DRF---VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALS-HDRKFLGSI 141 (203)
Q Consensus 72 ~~---~~~---~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~ 141 (203)
.+ ..+ .. ..+..-.+ +..+|++.++....+.|.+++.. |+.+..+..... .+++++|. ++...|+..
T Consensus 169 ~~~~~~~~~~~~~-~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~-~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 169 ELSNRRVFIDFPG-GPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVP-RPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp CEEEEEEEEE-SS-SSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSS-SEEEEEEESTTSSEEEEE
T ss_pred ceeeeeeEEEcCC-CCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCC-CEEEEEEECCCCCEEEEE
Confidence 11 122 22 12235556 78899988887788999999987 888888877634 78999995 566665543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.4e-06 Score=70.83 Aligned_cols=141 Identities=13% Similarity=0.252 Sum_probs=100.3
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeC-----CCEEEEecCCCeEEEEEcCCccccce-eeecC
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN-----GRKVVCGSQSGTVLLYSWGYFKDCSD-RFVGL 79 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~-----~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~~ 79 (203)
+|.++++|+.||+|.|..+-+.+....+.- ..++.+++++|+ .+.+++|+..| +.++.-+-.+.... .+..
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~- 158 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE- 158 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec-
Confidence 689999999999999999988776655554 467899999997 56889999888 77776432222222 2444
Q ss_pred CCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCC-----cceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 80 SPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE-----YPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 80 ~~~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
..++|.++ .-.|++|+-++..| |+|||+.+++.+..+..... .-...+.|.++.+ |+.| ...+|+|..++
T Consensus 159 ~eG~I~~i-~W~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 159 GEGPIHSI-KWRGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIK 233 (846)
T ss_pred CccceEEE-EecCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEEe
Confidence 57888888 22678999999888 89999998877766543322 1134567877654 4444 34578888887
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.4e-06 Score=66.22 Aligned_cols=147 Identities=12% Similarity=0.148 Sum_probs=100.6
Q ss_pred CcccccCCEEEEEc-----------CCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEec--CCCeEEEEEcC
Q 028802 1 MTFAADAMKLLGTS-----------GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS--QSGTVLLYSWG 67 (203)
Q Consensus 1 l~~sp~~~~l~~~~-----------~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~--~d~~i~v~d~~ 67 (203)
+.|++.|++|+.-. ...+++++++....+.... .-.++|...+|.|.++.+++.+ ..-.+.++|++
T Consensus 228 LkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr 306 (561)
T COG5354 228 LKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLR 306 (561)
T ss_pred EEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccc
Confidence 35788888765421 1356888888754433222 4578999999999888776544 57889999987
Q ss_pred CccccceeeecCCCCceeEE-EeeCCCEEEEEcC---CCcEEEEEccCCc-eeeeeccCCCcceEEEEEeCCCCeEEEEe
Q 028802 68 YFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSE---NGLISLVGILPNR-IIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 68 ~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~---dg~v~v~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 142 (203)
. .....+. ...-..+ |+|.++++++++- .|.+-+||....- +...+.+. ...-+.|+|+++++.+..
T Consensus 307 ~--Nl~~~~P---e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~---n~s~~~wspd~qF~~~~~ 378 (561)
T COG5354 307 G--NLRFYFP---EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL---NTSYCDWSPDGQFYDTDT 378 (561)
T ss_pred c--ceEEecC---CcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC---CceEeeccCCceEEEecC
Confidence 3 3433332 2333334 8999999998765 4779999976543 33355554 345678999999987665
Q ss_pred ------CCCcEEEEeCCCcc
Q 028802 143 ------HDSMLKLWDLDDIL 156 (203)
Q Consensus 143 ------~d~~i~iwd~~~~~ 156 (203)
.|..|.|||+....
T Consensus 379 ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 379 TSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred CCcccccCcceEEEEecCch
Confidence 37789999986653
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.9e-07 Score=70.75 Aligned_cols=135 Identities=12% Similarity=0.069 Sum_probs=93.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC-----------CCeEEEEEcCCc
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-----------SGTVLLYSWGYF 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-----------d~~i~v~d~~~~ 69 (203)
+.|||.|.+|++-..-| |.+|--.+-..++.+. | ..|..+.|||..++|++-+. ...++|||+.+
T Consensus 216 v~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t- 291 (698)
T KOG2314|consen 216 VRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT- 291 (698)
T ss_pred EEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc-
Confidence 47999999999987744 8889765544444453 3 34788999999999998543 25799999986
Q ss_pred cccceeeec-CCCCceeEE--EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEE
Q 028802 70 KDCSDRFVG-LSPNSVDAL--LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSI 141 (203)
Q Consensus 70 ~~~~~~~~~-~~~~~v~~~--~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 141 (203)
+...+.|.. .....++.+ ||.++++++.-..+ .|.||+..+..++-.-..... .|....|+|.++.||--
T Consensus 292 G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~-gIr~FswsP~~~llAYw 364 (698)
T KOG2314|consen 292 GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKIS-GIRDFSWSPTSNLLAYW 364 (698)
T ss_pred cchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCc-cccCcccCCCcceEEEE
Confidence 565555543 023456666 79999999877764 588998765333322111212 58888999998887743
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.2e-06 Score=67.35 Aligned_cols=149 Identities=15% Similarity=0.110 Sum_probs=91.7
Q ss_pred cccccCCEEEEEc---CC-CeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEec-CCCe--EEEEEcCCccccce
Q 028802 2 TFAADAMKLLGTS---GD-GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGT--VLLYSWGYFKDCSD 74 (203)
Q Consensus 2 ~~sp~~~~l~~~~---~d-~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~d~~--i~v~d~~~~~~~~~ 74 (203)
+|+|+++.++... .. ..++++++.+++....+. -...-...+|+|||++|+.+. .++. |+++|+.. ....
T Consensus 199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~--~~~~ 275 (425)
T COG0823 199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG--KNLP 275 (425)
T ss_pred ccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC--Ccce
Confidence 5889998775542 22 468999998875544333 123344578999998877554 4665 55566653 3344
Q ss_pred eeecCCCCceeEE-EeeCCCEEEEEcC-CC--cEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeC-CCc--E
Q 028802 75 RFVGLSPNSVDAL-LKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH-DSM--L 147 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~-dg--~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~--i 147 (203)
.+.. ..+.-..- |+|+|+.|+..+. .| .|.++++..+.. ..+..... .-..-.|+|||++|+..+. +|. |
T Consensus 276 ~Lt~-~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~-~~~~p~~SpdG~~i~~~~~~~g~~~i 352 (425)
T COG0823 276 RLTN-GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGG-GNSNPVWSPDGDKIVFESSSGGQWDI 352 (425)
T ss_pred eccc-CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCC-CCcCccCCCCCCEEEEEeccCCceee
Confidence 4543 22222233 8999999998765 34 477777765544 33333322 2236789999999987774 344 6
Q ss_pred EEEeCCCcc
Q 028802 148 KLWDLDDIL 156 (203)
Q Consensus 148 ~iwd~~~~~ 156 (203)
.+.++.+..
T Consensus 353 ~~~~~~~~~ 361 (425)
T COG0823 353 DKNDLASGG 361 (425)
T ss_pred EEeccCCCC
Confidence 666665544
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.1e-06 Score=64.68 Aligned_cols=135 Identities=10% Similarity=0.048 Sum_probs=89.5
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeE
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~ 86 (203)
+..+++++.+|.++.||..+++.+....... ...+. ..+..+++++.+|.+..+|..+. +.+-.... .......
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~--~~~p~--~~~~~vyv~~~~G~l~~~d~~tG-~~~W~~~~-~~~~~~s 314 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDASS--YQGPA--VDDNRLYVTDADGVVVALDRRSG-SELWKNDE-LKYRQLT 314 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeeccCC--ccCce--EeCCEEEEECCCCeEEEEECCCC-cEEEcccc-ccCCccc
Confidence 4567777889999999999998877665211 11222 34667888888999999999753 33322211 1111111
Q ss_pred EEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceE-EEEEeCCCCeEEEEeCCCcEEEE
Q 028802 87 LLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIE-SLALSHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 87 ~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~d~~i~iw 150 (203)
.....+..+++++.+|.|+++|..+++.+..+..+.. .+. +.++. + ..|+.++.||.|+.|
T Consensus 315 sp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~-~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 315 APAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGS-GIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred cCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC-ccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 1122467889999999999999999999988876533 222 22332 3 458888899999876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.7e-05 Score=60.59 Aligned_cols=112 Identities=9% Similarity=-0.058 Sum_probs=80.2
Q ss_pred cCCEEEEEcCC-----CeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC----------CCeEEEEEcCCcc
Q 028802 6 DAMKLLGTSGD-----GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ----------SGTVLLYSWGYFK 70 (203)
Q Consensus 6 ~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~----------d~~i~v~d~~~~~ 70 (203)
++..+++.... +.|.+.|..+++.+..+.....+- .+ ++||++.|+++.. +..|.+||+.+ .
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t-~ 87 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT-H 87 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECcc-C
Confidence 34445444332 899999999999988887544333 34 8999998877655 78999999986 3
Q ss_pred ccceeeecCCCC-------ceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeeeeccC
Q 028802 71 DCSDRFVGLSPN-------SVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQPIAEH 121 (203)
Q Consensus 71 ~~~~~~~~~~~~-------~v~~~-~~~~~~~l~~~~~--dg~v~v~d~~~~~~~~~~~~~ 121 (203)
+.+..+.. ... ....+ ++|+|++++.... +..|.++|+.+++.+..+...
T Consensus 88 ~~~~~i~~-p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp 147 (352)
T TIGR02658 88 LPIADIEL-PEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP 147 (352)
T ss_pred cEEeEEcc-CCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC
Confidence 55544442 111 11233 7999999998773 688999999999998887654
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.9e-07 Score=74.34 Aligned_cols=153 Identities=12% Similarity=0.121 Sum_probs=109.4
Q ss_pred cccccCC--EEEEEcCCCeEEEEEcCC---CeEEEeecCCcccEEEEEEeeCC-CEEEEecCCCeEEEEEcCCcccccee
Q 028802 2 TFAADAM--KLLGTSGDGTLSVCNLRK---NTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~~--~l~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~ 75 (203)
.|||... +-++......-.+|++.. ......+-+|...|+.+-|+|+. ..+++++.|..+..||++....++..
T Consensus 74 qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys 153 (1081)
T KOG0309|consen 74 QWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYS 153 (1081)
T ss_pred ecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceee
Confidence 4666543 444444456677898864 23445566889999999999965 56789999999999999876666655
Q ss_pred eecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC-ceeeeeccCCCcceEEEEEeCCC-CeEEEEeCCCcEEEEeC
Q 028802 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDL 152 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~ 152 (203)
+.. -......+ |+....-+++.+....|.+||++-| .++..+.+|.. .|..+.|..-. ..+.+++.|++++.||.
T Consensus 154 ~~~-w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs-~vn~~~fnr~~~s~~~s~~~d~tvkfw~y 231 (1081)
T KOG0309|consen 154 TSS-WRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVS-SVNSIDFNRFKYSEIMSSSNDGTVKFWDY 231 (1081)
T ss_pred eec-ccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccce-eeehHHHhhhhhhhhcccCCCCceeeecc
Confidence 554 33344555 7766666666677778999999865 56777777744 78888886533 46788889999999997
Q ss_pred CCcc
Q 028802 153 DDIL 156 (203)
Q Consensus 153 ~~~~ 156 (203)
....
T Consensus 232 ~kSt 235 (1081)
T KOG0309|consen 232 SKST 235 (1081)
T ss_pred cccc
Confidence 6543
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2e-06 Score=65.80 Aligned_cols=157 Identities=10% Similarity=0.053 Sum_probs=107.5
Q ss_pred cccccCCEEEEEcC-CCeEEEEEcCCCeEEEeecC--CcccEEEEEEee-CC---CEEEEec-CCCeEEEEEcCCccccc
Q 028802 2 TFAADAMKLLGTSG-DGTLSVCNLRKNTVQTRSEF--SEEELTSVVLMK-NG---RKVVCGS-QSGTVLLYSWGYFKDCS 73 (203)
Q Consensus 2 ~~sp~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~--~~~~i~~l~~~~-~~---~~l~~~~-~d~~i~v~d~~~~~~~~ 73 (203)
+.+-+|.++++... |..++++|+.+-..+..++. ..+. +.|.. .| ..|+++. .++.+.++|-.....+.
T Consensus 60 ~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~---a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~ 136 (558)
T KOG0882|consen 60 AVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGF---AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQD 136 (558)
T ss_pred hccccceeEeeccCcccceeEEEeeccchhhhcccccCCCc---eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCcc
Confidence 45667878888776 99999999986544332321 1221 22222 22 1344333 47899999987544444
Q ss_pred eeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC------CceeeeeccC--------CCcceEEEEEeCCCCeE
Q 028802 74 DRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP------NRIIQPIAEH--------SEYPIESLALSHDRKFL 138 (203)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~------~~~~~~~~~~--------~~~~i~~~~~~~~~~~l 138 (203)
..+...|..+|.++ +.+.+..+++....|.|.-|.... .+....+... ......++.|+|++..+
T Consensus 137 ~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qi 216 (558)
T KOG0882|consen 137 GYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQI 216 (558)
T ss_pred ceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcc
Confidence 55555588999999 899999999999999999998762 1111111110 01246889999999999
Q ss_pred EEEeCCCcEEEEeCCCcccCCCC
Q 028802 139 GSISHDSMLKLWDLDDILKGSGN 161 (203)
Q Consensus 139 ~~~~~d~~i~iwd~~~~~~~~~~ 161 (203)
.+.+.|..|+++.+.++...+..
T Consensus 217 stl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 217 STLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred cccCcccEEEEEEeccchhhhhh
Confidence 99999999999999999876553
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.52 E-value=8.9e-06 Score=65.73 Aligned_cols=123 Identities=15% Similarity=0.102 Sum_probs=81.9
Q ss_pred CCeEEEEEcCC-----CeEEEeecCCcccEEEEEEeeCCCEEEEecC-CCeEEEEEcCCccc-----------cceeeec
Q 028802 16 DGTLSVCNLRK-----NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKD-----------CSDRFVG 78 (203)
Q Consensus 16 d~~i~v~d~~~-----~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d~~i~v~d~~~~~~-----------~~~~~~~ 78 (203)
++.|.++|..+ ...+..+.. ....+.+.++|||+++++++. +.++.|+|+..... ....+..
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev 373 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL 373 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence 35688888877 345555543 455788999999999887765 88999999975322 1222333
Q ss_pred CCCCceeEEEeeCCCEEEEEcCCCcEEEEEccC----------CceeeeeccCCCcceEEEE------EeCCCCeEEEEe
Q 028802 79 LSPNSVDALLKLDEDRVITGSENGLISLVGILP----------NRIIQPIAEHSEYPIESLA------LSHDRKFLGSIS 142 (203)
Q Consensus 79 ~~~~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~----------~~~~~~~~~~~~~~i~~~~------~~~~~~~l~~~~ 142 (203)
..+++..-|.++|+...+...|..|..|++.. ...+..+..|.. +-.+. -.|+|+||++..
T Consensus 374 -GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~--pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 374 -GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQ--PGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred -CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCc--cceeeecCCCcCCCCCCEEEEcc
Confidence 34555555899998888888899999999875 234555555532 22222 256777777654
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.9e-06 Score=67.64 Aligned_cols=137 Identities=20% Similarity=0.192 Sum_probs=84.1
Q ss_pred cccccCCEEEEE-cCCCe--EEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEec-CCCeEEEEEcCCccccceeee
Q 028802 2 TFAADAMKLLGT-SGDGT--LSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 2 ~~sp~~~~l~~~-~~d~~--i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~ 77 (203)
+|||||++|+.+ ..||. |+++|+.++... .+....+.-..-.|+|+|+.++..+ ..|.-.||-....+.....++
T Consensus 244 ~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT 322 (425)
T COG0823 244 AFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP-RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLT 322 (425)
T ss_pred cCCCCCCEEEEEECCCCCccEEEEcCCCCcce-ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEee
Confidence 699999987655 44554 677777776643 3554444445778999999887655 455545544433344445554
Q ss_pred cCCCCceeEE-EeeCCCEEEEEcCC-Cc--EEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe
Q 028802 78 GLSPNSVDAL-LKLDEDRVITGSEN-GL--ISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d-g~--v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 142 (203)
. ....-... ++|+|++|+..+.. |. |.++++.++..+..+... . ......|.|+++.++..+
T Consensus 323 ~-~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~-~-~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 323 F-SGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTST-Y-LNESPSWAPNGRMIMFSS 388 (425)
T ss_pred c-cCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcccc-c-cCCCCCcCCCCceEEEec
Confidence 4 33333234 89999999987753 43 666777666544444332 1 344556777777766444
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.1e-06 Score=67.18 Aligned_cols=124 Identities=10% Similarity=0.116 Sum_probs=85.9
Q ss_pred CcccccCCEEEE--EcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC---CCeEEEEEcCCcccccee
Q 028802 1 MTFAADAMKLLG--TSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~~~~ 75 (203)
+.|+|+|+.+++ |-.-..+.|+|++.. ++..+ .+++-+++-|+|.|++|+.++. -|.+.|||+.+ .+++..
T Consensus 276 v~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~ 351 (566)
T KOG2315|consen 276 VTWSPSGREFAVVYGFMPAKVTIFNLRGK-PVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN-RKLIAK 351 (566)
T ss_pred EEECCCCCEEEEEEecccceEEEEcCCCC-EeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccc-hhhccc
Confidence 469999976544 445678899998753 44444 3566778999999999998776 47999999986 566666
Q ss_pred eecCCCCceeEEEeeCCCEEEEEcC------CCcEEEEEccCCceeeeeccCCCcceEEEEEeC
Q 028802 76 FVGLSPNSVDALLKLDEDRVITGSE------NGLISLVGILPNRIIQPIAEHSEYPIESLALSH 133 (203)
Q Consensus 76 ~~~~~~~~v~~~~~~~~~~l~~~~~------dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~ 133 (203)
+.. .....+-|+|+|.+|++++. |+.++||+. +|..+....-.. ....+.|-|
T Consensus 352 ~~a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~f~s--EL~qv~W~P 410 (566)
T KOG2315|consen 352 FKA--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKMFKS--ELLQVEWRP 410 (566)
T ss_pred ccc--CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhhhhH--hHhheeeee
Confidence 654 33333339999999999875 567889986 455553332221 255666665
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.4e-05 Score=55.96 Aligned_cols=148 Identities=18% Similarity=0.208 Sum_probs=93.4
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCC--
Q 028802 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN-- 82 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~-- 82 (203)
+++..+++++.++.|+.||..+|+.+...... .++.... ...+..+++++.++.++.+|..+.......... ...
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~ 110 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLT-SSPPA 110 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE--SSCTC
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEeecc-cccccee-eecccccccccceeeeEecccCCcceeeeeccc-ccccc
Confidence 36677888889999999999999988777652 2211112 234556666667889999998764333332232 211
Q ss_pred ceeE-E-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCc---ce------EEEEEeCCCCeEEEEeCCCcEEEEe
Q 028802 83 SVDA-L-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY---PI------ESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 83 ~v~~-~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~---~i------~~~~~~~~~~~l~~~~~d~~i~iwd 151 (203)
.+.. . ....+..++++..++.|..+|+.+|+.+......... .+ ..-....++ .++.+..++.+..+|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d 189 (238)
T PF13360_consen 111 GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVD 189 (238)
T ss_dssp STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEE
T ss_pred ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEE
Confidence 1111 1 3445888899988999999999999998777654311 11 122222344 666666677544449
Q ss_pred CCCcc
Q 028802 152 LDDIL 156 (203)
Q Consensus 152 ~~~~~ 156 (203)
+.++.
T Consensus 190 ~~tg~ 194 (238)
T PF13360_consen 190 LATGE 194 (238)
T ss_dssp TTTTE
T ss_pred CCCCC
Confidence 88886
|
... |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.2e-06 Score=66.76 Aligned_cols=73 Identities=15% Similarity=0.166 Sum_probs=59.4
Q ss_pred CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC
Q 028802 35 FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP 111 (203)
Q Consensus 35 ~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~ 111 (203)
...+.+.+.+++|+...|+.|+.||.|.+||.... +..+.. ..-.+..+ |+|+|..+++|+..|.+.+||+.-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~---~t~~~k-a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRG---VTLLAK-AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCC---eeeeee-ecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 35678999999999999999999999999998632 222333 34445666 999999999999999999999854
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.7e-05 Score=55.29 Aligned_cols=155 Identities=8% Similarity=0.072 Sum_probs=96.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC--eEEEeec---CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcccccee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKN--TVQTRSE---FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~--~~~~~~~---~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 75 (203)
++.+++|+.||+. .|..|.|-..+.. ..+.+.. ....+=+.++|+||+..|+.+...|+|++||+. +..+..
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~--g~~lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLM--GSELFV 79 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecc--cceeEE
Confidence 3567889888775 6688888877653 2222222 233445789999999999999999999999986 233333
Q ss_pred eec------CCCCceeEE-E-eeC-----CCEEEEEcCCCcEEEEEccCC-----ceee--eeccCCCcceEEEEEeCCC
Q 028802 76 FVG------LSPNSVDAL-L-KLD-----EDRVITGSENGLISLVGILPN-----RIIQ--PIAEHSEYPIESLALSHDR 135 (203)
Q Consensus 76 ~~~------~~~~~v~~~-~-~~~-----~~~l~~~~~dg~v~v~d~~~~-----~~~~--~~~~~~~~~i~~~~~~~~~ 135 (203)
+.. .....|..+ | .+. ...+++-...|.++-|-+..+ +... .+..|....|.++.++|.-
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 322 012345555 4 121 235666677888877765322 2222 2333323379999999998
Q ss_pred CeEEEEeC-CC----------cEEEEeCCCcccC
Q 028802 136 KFLGSISH-DS----------MLKLWDLDDILKG 158 (203)
Q Consensus 136 ~~l~~~~~-d~----------~i~iwd~~~~~~~ 158 (203)
+.|++|+. .. -|..|.+-+..+-
T Consensus 160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Py 193 (282)
T PF15492_consen 160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPY 193 (282)
T ss_pred CEEEEeccCCCCCccccccccCceEEEEcCCCCc
Confidence 88877762 11 2566766655543
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.2e-06 Score=70.72 Aligned_cols=150 Identities=13% Similarity=0.132 Sum_probs=97.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC-----------------------CeEEEeecC----------------------
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRK-----------------------NTVQTRSEF---------------------- 35 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~-----------------------~~~~~~~~~---------------------- 35 (203)
++||||+..|+..+.+++|.+..-.= |+....+.+
T Consensus 126 ~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~ 205 (928)
T PF04762_consen 126 ASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGK 205 (928)
T ss_pred EEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCc
Confidence 57999999999998888887664210 000001100
Q ss_pred --CcccEEEEEEeeCCCEEEEecC---C---CeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcC---CCc
Q 028802 36 --SEEELTSVVLMKNGRKVVCGSQ---S---GTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSE---NGL 103 (203)
Q Consensus 36 --~~~~i~~l~~~~~~~~l~~~~~---d---~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~---dg~ 103 (203)
....-..|+|-.||.++++.+. . ..++||+-. +....+-.. -.+--.++ |.|.|++|++... ...
T Consensus 206 ~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re--G~L~stSE~-v~gLe~~l~WrPsG~lIA~~q~~~~~~~ 282 (928)
T PF04762_consen 206 LSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE--GELQSTSEP-VDGLEGALSWRPSGNLIASSQRLPDRHD 282 (928)
T ss_pred cccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC--ceEEecccc-CCCccCCccCCCCCCEEEEEEEcCCCcE
Confidence 1123457889999999998764 2 578999864 343333332 33334456 8999999998765 345
Q ss_pred EEEEEccCCceeeeecc---CCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 104 ISLVGILPNRIIQPIAE---HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 104 v~v~d~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
|.+|. ++|-....|.. +....|..+.|++|+..||....|. |.+|-..+.
T Consensus 283 VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 283 VVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred EEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC
Confidence 66666 44544333322 2234799999999999999877655 999987664
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.47 E-value=9.8e-08 Score=78.49 Aligned_cols=134 Identities=14% Similarity=0.118 Sum_probs=97.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCC--eEEEEEcCCccccceeeec
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSG--TVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~--~i~v~d~~~~~~~~~~~~~ 78 (203)
++|+-+.++|+.|+..|.|++|++.+|.......+|.++|+.+.-+.+|..+++.+.-. -..+|++.......+.|..
T Consensus 1107 ~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e 1186 (1516)
T KOG1832|consen 1107 IAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDE 1186 (1516)
T ss_pred EEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCccccccc
Confidence 47888899999999999999999999999999999999999999888998877665533 4678998755555555554
Q ss_pred CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC---CcceEEEEEeCCCCeEE
Q 028802 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS---EYPIESLALSHDRKFLG 139 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~ 139 (203)
-.++ |+..-..-+.|+....+.+||++++..+.++-... ...-.++.|+|+...++
T Consensus 1187 -----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1187 -----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred -----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 2344 65544444556665678899999987776632211 11235567777766554
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.2e-06 Score=62.77 Aligned_cols=76 Identities=17% Similarity=0.124 Sum_probs=61.9
Q ss_pred CcccccCC-EEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCC-CEEEEecCCCeEEEEEcCCccccceeee
Q 028802 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 77 (203)
|+|||..+ ++..++.+..|.|.|+++...+..+..+ .++++++|.-+. ++|+.|..+|.|.+||++.....+..+.
T Consensus 199 lafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~ 276 (463)
T KOG1645|consen 199 LAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELV 276 (463)
T ss_pred hccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhh
Confidence 57899776 7888999999999999998888877776 889999998865 5667777899999999986554444443
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.4e-05 Score=56.72 Aligned_cols=139 Identities=18% Similarity=0.124 Sum_probs=90.4
Q ss_pred CCeEEEEEcCCCeEEEeecCC--cccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEEEeeCCC
Q 028802 16 DGTLSVCNLRKNTVQTRSEFS--EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDED 93 (203)
Q Consensus 16 d~~i~v~d~~~~~~~~~~~~~--~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 93 (203)
+|+|..||..+|+.+...... .....+. ..+++..+++++.++.++.||..+ ++.+-.+.. ...+.......+.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~t-G~~~W~~~~--~~~~~~~~~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKT-GKVLWRFDL--PGPISGAPVVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTT-SEEEEEEEC--SSCGGSGEEEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCC-CCEEEEeec--cccccceeeeccc
Confidence 689999999999998877541 1222211 334667788888999999999865 444444432 1111111133556
Q ss_pred EEEEEcCCCcEEEEEccCCceeeee-ccCC-Cc-ceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 94 RVITGSENGLISLVGILPNRIIQPI-AEHS-EY-PIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 94 ~l~~~~~dg~v~v~d~~~~~~~~~~-~~~~-~~-~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.+++++.++.|+.+|..+|+.+... .... .. ..........+..++.+..++.|..+|+.++...
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLL 145 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEE
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEE
Confidence 6777778889999999999998874 3221 10 1122333334788888888999999999988763
|
... |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.9e-05 Score=63.89 Aligned_cols=147 Identities=10% Similarity=0.047 Sum_probs=98.5
Q ss_pred ccccCCEEEEE-cCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC------------------------
Q 028802 3 FAADAMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ------------------------ 57 (203)
Q Consensus 3 ~sp~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~------------------------ 57 (203)
++|||+.+... -..+.+.++|..+.+....+.-.. ....+.++|+|.++++.+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 56677765433 335678888888877766665422 4456778888888776641
Q ss_pred ----------------CCeEEEEEcCC----ccccceeeecCCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCce-
Q 028802 58 ----------------SGTVLLYSWGY----FKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILPNRI- 114 (203)
Q Consensus 58 ----------------d~~i~v~d~~~----~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-dg~v~v~d~~~~~~- 114 (203)
++.|.+.|..+ .......+.. ......+ ++|+|+++++++. +..|.|+|+...+.
T Consensus 279 ~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPV--GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~ 356 (635)
T PRK02888 279 ARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPV--PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDL 356 (635)
T ss_pred HHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEEC--CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhh
Confidence 23466666653 1223333332 3445666 8999999888765 88999999987542
Q ss_pred -----------eeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 115 -----------IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 115 -----------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
....... . .....+|.++|....+...|..|..|++.+
T Consensus 357 ~~~~~~~~~~vvaevevG-l-GPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 357 FDGKIKPRDAVVAEPELG-L-GPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhccCCccceEEEeeccC-C-CcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 3333333 2 234678999998888888999999999887
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.5e-05 Score=55.86 Aligned_cols=141 Identities=13% Similarity=0.118 Sum_probs=97.1
Q ss_pred Ccccc-cCCEEEEEcCCCe-EEEEEcCCCeEEEeecCCcccE--EEEEEeeCCCEEEEecC-----CCeEEEEEcCCccc
Q 028802 1 MTFAA-DAMKLLGTSGDGT-LSVCNLRKNTVQTRSEFSEEEL--TSVVLMKNGRKVVCGSQ-----SGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~-i~v~d~~~~~~~~~~~~~~~~i--~~l~~~~~~~~l~~~~~-----d~~i~v~d~~~~~~ 71 (203)
++.+| .+..++.+-+-|+ +.+||..+++....+......- -.-.|++||++|++.-. .|.|-|||....-.
T Consensus 10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ 89 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYR 89 (305)
T ss_pred eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcE
Confidence 35678 4556677766554 7799999998887776544332 13579999999998644 47899999974445
Q ss_pred cceeeecCCCCceeEE-EeeCCCEEEEEcC------------------CCcEEEEEccCCceeeeecc----CCCcceEE
Q 028802 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSE------------------NGLISLVGILPNRIIQPIAE----HSEYPIES 128 (203)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~------------------dg~v~v~d~~~~~~~~~~~~----~~~~~i~~ 128 (203)
.+..+.. +.-....+ +.|+|+.|+++.. +-.+.+.|..+|+.+..... | ...|..
T Consensus 90 ri~E~~s-~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~-~lSiRH 167 (305)
T PF07433_consen 90 RIGEFPS-HGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLH-QLSIRH 167 (305)
T ss_pred EEeEecC-CCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccc-ccceee
Confidence 5566665 55445555 8999988877642 23466677788888766433 4 337999
Q ss_pred EEEeCCCCeEEEEeC
Q 028802 129 LALSHDRKFLGSISH 143 (203)
Q Consensus 129 ~~~~~~~~~l~~~~~ 143 (203)
+++.++|..++..-.
T Consensus 168 La~~~~G~V~~a~Q~ 182 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQY 182 (305)
T ss_pred EEecCCCcEEEEEec
Confidence 999999876655443
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.5e-05 Score=59.40 Aligned_cols=144 Identities=15% Similarity=0.076 Sum_probs=94.6
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCcee
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~ 85 (203)
.+..+++++.++.|..+|..+|+.+............+. .++..+++++.++.++.+|..+. +.+-.... ...+.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG-~~~W~~~~--~~~~~ 138 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDG-KELWRAKL--SSEVL 138 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCC-cEeeeecc--Cceee
Confidence 356788888899999999999998877654332222222 25678888888999999998754 43333322 22222
Q ss_pred EEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcce-----EEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028802 86 ALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPI-----ESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 86 ~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
+...-.+..++.++.++.|+.+|..+|+.+..+..... .+ .+.... + ..++.+..++.+..+|++++..
T Consensus 139 ~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~-~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~ 212 (377)
T TIGR03300 139 SPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTP-ALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQP 212 (377)
T ss_pred cCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCC-ceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCCE
Confidence 22111345677788899999999999998877654421 11 111121 2 4677777889999999988754
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.4e-05 Score=65.39 Aligned_cols=138 Identities=16% Similarity=0.160 Sum_probs=96.3
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeE
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~ 86 (203)
+++++-|+..|.|++++..... .+...|... ...|.++++|+.||.+.|..+.+. .....+. ...++.+
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~-~~~~~~d--f~rpiks 117 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTD-DEITQYD--FKRPIKS 117 (846)
T ss_pred cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCC-ccceeEe--cCCccee
Confidence 5788999999999999976543 333344332 568999999999999999988654 3333333 3456777
Q ss_pred E-EeeC-----CCEEEEEcCCCcEEEEEccC-Cceee-eeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 87 L-LKLD-----EDRVITGSENGLISLVGILP-NRIIQ-PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 87 ~-~~~~-----~~~l~~~~~dg~v~v~d~~~-~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
+ ++|+ .+.+++|+..| +.++.-+- |.... .+... .++|.++.| .|+++|.+..+| |+|||+.+...-
T Consensus 118 ial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~-eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l 192 (846)
T KOG2066|consen 118 IALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEG-EGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRL 192 (846)
T ss_pred EEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecC-ccceEEEEe--cCcEEEEecCCC-cEEEecccccee
Confidence 7 7886 67889999988 77776332 11111 23333 348999999 577898888665 799999887654
Q ss_pred CC
Q 028802 159 SG 160 (203)
Q Consensus 159 ~~ 160 (203)
..
T Consensus 193 ~~ 194 (846)
T KOG2066|consen 193 TN 194 (846)
T ss_pred ec
Confidence 33
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.3e-06 Score=70.81 Aligned_cols=134 Identities=11% Similarity=0.105 Sum_probs=94.4
Q ss_pred CcccccCC-EEEEEcCCCeEEEEEcCCCe-EEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028802 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNT-VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
+.|+|+.. .+++++-|..+..||+++.. ++.....-......++|+-....+...+....|.+||++....++..+++
T Consensus 120 ~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~ 199 (1081)
T KOG0309|consen 120 INFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKG 199 (1081)
T ss_pred cccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecc
Confidence 35777654 67889999999999998753 34444333455677899864444555566788999999988888888988
Q ss_pred CCCCceeEE-Ee-eCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCC
Q 028802 79 LSPNSVDAL-LK-LDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR 135 (203)
Q Consensus 79 ~~~~~v~~~-~~-~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 135 (203)
|...+..+ |. .....+.+++.||+|+.||.............+..+|+-..+.|-|
T Consensus 200 -~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg 257 (1081)
T KOG0309|consen 200 -HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFG 257 (1081)
T ss_pred -cceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccC
Confidence 88888888 63 3556788999999999999764333222222334466666666633
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.7e-05 Score=60.76 Aligned_cols=137 Identities=14% Similarity=0.160 Sum_probs=80.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
|.++|+|++++++ .+|...|+.....+... .+.-....|.+.+ .+++-...+.|.++.-- .......+..
T Consensus 38 ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~-~~~~~k~i~~-- 107 (443)
T PF04053_consen 38 LSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNF-KNEVVKSIKL-- 107 (443)
T ss_dssp EEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETT-EE-TT-------
T ss_pred EEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEecCc-cEEEEECCCeEEEEEcC-ccccceEEcC--
Confidence 4689999999885 45888888854443322 1233457888844 46666668889997322 1223233442
Q ss_pred CCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 81 PNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 81 ~~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
...+..+|. |.+|...+.+ .|.+||..+++.+..+... +|..+.|+++|.+++..+.+ .+.|++...
T Consensus 108 ~~~~~~If~--G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~---~vk~V~Ws~~g~~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 108 PFSVEKIFG--GNLLGVKSSD-FICFYDWETGKLIRRIDVS---AVKYVIWSDDGELVALVTKD-SIYILKYNL 174 (443)
T ss_dssp SS-EEEEE---SSSEEEEETT-EEEEE-TTT--EEEEESS----E-EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred CcccceEEc--CcEEEEECCC-CEEEEEhhHcceeeEEecC---CCcEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence 334555655 7777776555 7999999999999988754 58999999999999888744 778877543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.6e-05 Score=65.12 Aligned_cols=143 Identities=15% Similarity=0.160 Sum_probs=96.0
Q ss_pred CCEEEEE-cCCCeEEEEEcCCCeEEEeecCCccc-EEEEEEee-----CCCEEEEecCCCeEEEEEcCCcccccee--e-
Q 028802 7 AMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEE-LTSVVLMK-----NGRKVVCGSQSGTVLLYSWGYFKDCSDR--F- 76 (203)
Q Consensus 7 ~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~-i~~l~~~~-----~~~~l~~~~~d~~i~v~d~~~~~~~~~~--~- 76 (203)
.++|+.- .....|+-.|+..|+.+.....+... |..++-.. .....++|-.+..+..||.+..+..+.. .
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3444443 34578999999999999888876543 55544221 1234566677888999999865422211 1
Q ss_pred -ecCCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028802 77 -VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 77 -~~~~~~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
.. ......|+.+....+|++|+.+|.|++||--..+....+.+- +.+|.+|..+.||+||++.| +..|.++++
T Consensus 573 ~Y~-~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~l-G~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 573 QYS-SKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGL-GDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred ccc-cCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCC-CCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 11 344566666666678999999999999994332333445554 34999999999999987766 557777775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.6e-05 Score=67.00 Aligned_cols=147 Identities=13% Similarity=0.113 Sum_probs=95.8
Q ss_pred CcccccCCEEEEEcC------CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC---CCeEEEEEcCCccc
Q 028802 1 MTFAADAMKLLGTSG------DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~------d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~---d~~i~v~d~~~~~~ 71 (203)
|+|-.||+++|+.+- -..++||+-. |.+..+.+.-.+--.+++|-|.|+++++... ...|.+|.-+ +.
T Consensus 215 ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN--GL 291 (928)
T PF04762_consen 215 ISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN--GL 291 (928)
T ss_pred EEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC--Cc
Confidence 468899999988753 2579999955 6655555543444457899999999998765 3456666643 33
Q ss_pred cceeeec---CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCce--eeeeccCCCcceEEEEEeCCC-CeEEEEeCC
Q 028802 72 CSDRFVG---LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI--IQPIAEHSEYPIESLALSHDR-KFLGSISHD 144 (203)
Q Consensus 72 ~~~~~~~---~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d 144 (203)
....|.- .....+..+ |++++..|+....+. |++|-..+..- .+.+.......+..+.|+|.. ..|...+.+
T Consensus 292 rhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~ 370 (928)
T PF04762_consen 292 RHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSN 370 (928)
T ss_pred EeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecC
Confidence 2223322 034568888 999999999977655 99998876532 233332222245558999965 446666665
Q ss_pred CcEEEEe
Q 028802 145 SMLKLWD 151 (203)
Q Consensus 145 ~~i~iwd 151 (203)
+.+..++
T Consensus 371 g~~~~~~ 377 (928)
T PF04762_consen 371 GQYEIYD 377 (928)
T ss_pred CcEEEEE
Confidence 7665554
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.33 E-value=8.4e-06 Score=59.93 Aligned_cols=118 Identities=10% Similarity=0.166 Sum_probs=78.6
Q ss_pred CcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee--ecCCC-----CceeEE-EeeC-CCEEEEEcCCCcEEE
Q 028802 36 SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF--VGLSP-----NSVDAL-LKLD-EDRVITGSENGLISL 106 (203)
Q Consensus 36 ~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~-----~~v~~~-~~~~-~~~l~~~~~dg~v~v 106 (203)
|...|.++.+..|...++++. +-.|.+|.+.........+ +. +. ..|++. |+|. ...+...+..|.|++
T Consensus 171 H~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP-~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 171 HPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKP-HNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred ceeEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccC-ccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 556678888988888777654 6789999886443332222 22 22 245666 8884 567777888999999
Q ss_pred EEccCCc------eeeeeccC---------CCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 107 VGILPNR------IIQPIAEH---------SEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 107 ~d~~~~~------~~~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
.|++... .+...... .-..|..+.|+++|+++++-.. -+++|||++...
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k 312 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK 312 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc
Confidence 9998321 11111100 0126888999999999998765 479999987654
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00038 Score=50.94 Aligned_cols=146 Identities=15% Similarity=0.141 Sum_probs=89.6
Q ss_pred ccc-ccCCEEEEEcCCCeEEEEEcCCCeEEEeecC-----CcccEEEEEEeeCCCEEEEecCC--------CeEEEEEcC
Q 028802 2 TFA-ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-----SEEELTSVVLMKNGRKVVCGSQS--------GTVLLYSWG 67 (203)
Q Consensus 2 ~~s-p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-----~~~~i~~l~~~~~~~~l~~~~~d--------~~i~v~d~~ 67 (203)
++. +++ .|+.+.. +.+.++|..+++....... .....+.+++.|+|++.++.... |.+..++..
T Consensus 46 ~~~~~~g-~l~v~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~ 123 (246)
T PF08450_consen 46 AFDRPDG-RLYVADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD 123 (246)
T ss_dssp EEECTTS-EEEEEET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT
T ss_pred EEEccCC-EEEEEEc-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC
Confidence 344 454 4444444 4456669888755433321 34678899999999977765443 456666654
Q ss_pred CccccceeeecCCCCceeEE-EeeCCCEEE-EEcCCCcEEEEEccCCce-------eeeeccCCCcceEEEEEeCCCCeE
Q 028802 68 YFKDCSDRFVGLSPNSVDAL-LKLDEDRVI-TGSENGLISLVGILPNRI-------IQPIAEHSEYPIESLALSHDRKFL 138 (203)
Q Consensus 68 ~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~-~~~~dg~v~v~d~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~l 138 (203)
+. +..+.. .......+ |+|+++.|+ +-+..+.|..|++..... ...+.... ...-.+++..+|+..
T Consensus 124 --~~-~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-g~pDG~~vD~~G~l~ 198 (246)
T PF08450_consen 124 --GK-VTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP-GYPDGLAVDSDGNLW 198 (246)
T ss_dssp --SE-EEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS-CEEEEEEEBTTS-EE
T ss_pred --Ce-EEEEec-CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC-cCCCcceEcCCCCEE
Confidence 23 222332 34445677 899998776 456678899999863221 11122221 136789999999988
Q ss_pred EEEeCCCcEEEEeCCC
Q 028802 139 GSISHDSMLKLWDLDD 154 (203)
Q Consensus 139 ~~~~~d~~i~iwd~~~ 154 (203)
++....+.|.+++...
T Consensus 199 va~~~~~~I~~~~p~G 214 (246)
T PF08450_consen 199 VADWGGGRIVVFDPDG 214 (246)
T ss_dssp EEEETTTEEEEEETTS
T ss_pred EEEcCCCEEEEECCCc
Confidence 8877889999999873
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.8e-05 Score=62.27 Aligned_cols=148 Identities=11% Similarity=0.111 Sum_probs=92.6
Q ss_pred ccccCCEEEEEc----------CCCeEEEEEcCCCeE-EEeecCCcccEEEEEEeeCCCEEEEecC---CCeEEEEEcCC
Q 028802 3 FAADAMKLLGTS----------GDGTLSVCNLRKNTV-QTRSEFSEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGY 68 (203)
Q Consensus 3 ~sp~~~~l~~~~----------~d~~i~v~d~~~~~~-~~~~~~~~~~i~~l~~~~~~~~l~~~~~---d~~i~v~d~~~ 68 (203)
|-.+|.+|+.-. .-..+.|+.++.... +..+ .....|...+|-|.|..+++-+. ..++.+|-+..
T Consensus 401 WQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~ 479 (698)
T KOG2314|consen 401 WQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET 479 (698)
T ss_pred eccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence 556677776531 112344555544322 2222 23567889999999988776543 46788898863
Q ss_pred ccc---cceeeecCCCCceeEE-EeeCCCEEEEEc---CCCcEEEEEccCCceee-eeccCCCcceEEEEEeCCCCeEEE
Q 028802 69 FKD---CSDRFVGLSPNSVDAL-LKLDEDRVITGS---ENGLISLVGILPNRIIQ-PIAEHSEYPIESLALSHDRKFLGS 140 (203)
Q Consensus 69 ~~~---~~~~~~~~~~~~v~~~-~~~~~~~l~~~~---~dg~v~v~d~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~ 140 (203)
... .+..+. ......+ |+|.|.+++.+. ..|.+.+||+.-..+.. ....|. ..+.+.|.|.|+|+++
T Consensus 480 ~~~~~~lVk~~d---k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~--~at~veWDPtGRYvvT 554 (698)
T KOG2314|consen 480 NIKKPSLVKELD---KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF--AATEVEWDPTGRYVVT 554 (698)
T ss_pred CCCchhhhhhhc---ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccc--ccccceECCCCCEEEE
Confidence 222 222332 2344566 899999988764 57889999987422221 223342 5678899999999998
Q ss_pred EeC------CCcEEEEeCCCcc
Q 028802 141 ISH------DSMLKLWDLDDIL 156 (203)
Q Consensus 141 ~~~------d~~i~iwd~~~~~ 156 (203)
++. |.--++|++....
T Consensus 555 ~ss~wrhk~d~GYri~tfqGrl 576 (698)
T KOG2314|consen 555 SSSSWRHKVDNGYRIFTFQGRL 576 (698)
T ss_pred eeehhhhccccceEEEEeecHH
Confidence 874 4456888877654
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.4e-05 Score=64.85 Aligned_cols=118 Identities=14% Similarity=0.209 Sum_probs=93.4
Q ss_pred cccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcc--------------ccceeeecCCCCceeEE-EeeCCCEEEEEcCC
Q 028802 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--------------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSEN 101 (203)
Q Consensus 37 ~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~--------------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d 101 (203)
.....++.|+....++++|+.||.++|..+.+.. ..-+++.+ |...|..+ |+.....+.++..+
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeG-H~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEG-HNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhcc-CcceEEEEEeccccccccccCCC
Confidence 4568899999999999999999999999775321 12345678 89999988 99889999999999
Q ss_pred CcEEEEEccCCceeeeec-cCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 102 GLISLVGILPNRIIQPIA-EHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 102 g~v~v~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
|.|.||-+-.|.-...+. ....+-|.+|+|+.+|+.++....||.|.|=.++..
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGN 147 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGN 147 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccc
Confidence 999999998776543332 222346899999999999999999998876655543
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00031 Score=50.80 Aligned_cols=136 Identities=14% Similarity=0.071 Sum_probs=92.8
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE
Q 028802 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL 87 (203)
Q Consensus 8 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~ 87 (203)
.+++.|+..+.+.-.|..+|+++..-.. ..+|.+-+.- -|.+++.|...|.+++.++.+ +.....+.....-.+...
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~t-Gs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKT-GSQIWNFVILETVKVRAQ 100 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecc-hhheeeeeehhhhccceE
Confidence 3567788889999999999988765432 3445544433 467899999999999999986 444444443123334444
Q ss_pred EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcE
Q 028802 88 LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSML 147 (203)
Q Consensus 88 ~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 147 (203)
..+++..|.+++.|+..+..|.++..++...+.... -..+-++.|-...|..+...|.+
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~-~f~sP~i~~g~~sly~a~t~G~v 159 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG-TFVSPVIAPGDGSLYAAITAGAV 159 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEecccCCc-eeccceecCCCceEEEEeccceE
Confidence 789999999999999999999999888877665522 23344566633334444444444
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.9e-05 Score=58.09 Aligned_cols=155 Identities=17% Similarity=0.150 Sum_probs=103.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC---eEEEeecCCc-----ccEEEEEEeeCC-CEEEEecCCCeEEEEEcCCccc
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSE-----EELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~---~~~~~~~~~~-----~~i~~l~~~~~~-~~l~~~~~d~~i~v~d~~~~~~ 71 (203)
+.|+.|.+.++++ .|-.|.+|++.-. -.+..++.|. .-|++..|+|.. +.+..++..|.|++-|++....
T Consensus 178 iS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~al 256 (460)
T COG5170 178 ISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSAL 256 (460)
T ss_pred eeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhh
Confidence 3566677777775 4577899988642 1223334432 347788899854 5677788899999999984321
Q ss_pred cce---e------------eecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC-CceeeeeccCCC-----------
Q 028802 72 CSD---R------------FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSE----------- 123 (203)
Q Consensus 72 ~~~---~------------~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~-~~~~~~~~~~~~----------- 123 (203)
+.. . +.. -...|..+ |++.|++|++-.. -+|++||.+. ..++.++..|..
T Consensus 257 cdn~~klfe~~~D~v~~~ff~e-ivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEn 334 (460)
T COG5170 257 CDNSKKLFELTIDGVDVDFFEE-IVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYEN 334 (460)
T ss_pred ccCchhhhhhccCcccchhHHH-HhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhc
Confidence 111 0 111 22456667 8999999987655 4799999875 456777654421
Q ss_pred cce---EEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 124 YPI---ESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 124 ~~i---~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.+| ..+.|+.|...+++|+.....-+|-+.+....
T Consensus 335 DaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ssg~~ 372 (460)
T COG5170 335 DAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDSSGFK 372 (460)
T ss_pred cceeeeEEEEecCCcccccccccccceeeeccccCCCC
Confidence 123 45789999999999999999888886655443
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.6e-06 Score=66.36 Aligned_cols=87 Identities=13% Similarity=0.105 Sum_probs=70.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEE-EEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELT-SVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~-~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
+.|+|.-..+|++..+|.|-+..+. .+.+.++..+...++ +++|.|||+.|++|-.||+|++.|+............
T Consensus 26 ~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s- 103 (665)
T KOG4640|consen 26 IEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFS- 103 (665)
T ss_pred EEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccc-
Confidence 4689999999999999999999888 778888887777777 9999999999999999999999999865443332333
Q ss_pred CCCceeEE-Ee
Q 028802 80 SPNSVDAL-LK 89 (203)
Q Consensus 80 ~~~~v~~~-~~ 89 (203)
....+.++ |.
T Consensus 104 ~e~~is~~~w~ 114 (665)
T KOG4640|consen 104 VETDISKGIWD 114 (665)
T ss_pred cccchheeecc
Confidence 45567766 54
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.7e-06 Score=66.99 Aligned_cols=124 Identities=18% Similarity=0.217 Sum_probs=88.8
Q ss_pred EEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccc------cceeeecCCCCceeEE-EeeCCCEEEEEcCCC
Q 028802 30 QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD------CSDRFVGLSPNSVDAL-LKLDEDRVITGSENG 102 (203)
Q Consensus 30 ~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~------~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg 102 (203)
+..+.+|...|..++-..+.+.+++++.|.++++|.++..+. +..+++. |..+|..+ |-.+-+++++ -||
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~a-Hkk~i~~igfL~~lr~i~S--cD~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQA-HKKPIHDIGFLADLRSIAS--CDG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhh-ccCcccceeeeeccceeee--ccC
Confidence 456678888888888777888999999999999999975432 3345667 88999999 8777777655 467
Q ss_pred cEEEEEccCCceeeeecc-CCCcceEEEEEeCC--CCeEEEE-eCCCcEEEEeCCCcc
Q 028802 103 LISLVGILPNRIIQPIAE-HSEYPIESLALSHD--RKFLGSI-SHDSMLKLWDLDDIL 156 (203)
Q Consensus 103 ~v~v~d~~~~~~~~~~~~-~~~~~i~~~~~~~~--~~~l~~~-~~d~~i~iwd~~~~~ 156 (203)
.|++||.--++++..+.. .....+..+..-|+ ...++.+ +...+++++|.+.+.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce 862 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCE 862 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccccc
Confidence 899999887877764422 21224444444443 3444444 578899999998775
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00045 Score=54.01 Aligned_cols=152 Identities=13% Similarity=0.101 Sum_probs=107.0
Q ss_pred CcccccCCEEEEEcC---CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEec-CCCeEEEEEcCCccccce--
Q 028802 1 MTFAADAMKLLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSD-- 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~-- 74 (203)
++++|+++.++++.. ++++.+.|..++..+........+ ..++++|+|..+++.. .++.+.++|.... ....
T Consensus 121 ~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~-~v~~~~ 198 (381)
T COG3391 121 LAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGN-SVVRGS 198 (381)
T ss_pred EEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCc-ceeccc
Confidence 468899988776654 689999999988887776544444 8899999999777665 6889999997532 2221
Q ss_pred ---eeecCCCCceeEE-EeeCCCEEEEEcCC---CcEEEEEccCCceeee-eccCCCcceEEEEEeCCCCeEEEEe-CCC
Q 028802 75 ---RFVGLSPNSVDAL-LKLDEDRVITGSEN---GLISLVGILPNRIIQP-IAEHSEYPIESLALSHDRKFLGSIS-HDS 145 (203)
Q Consensus 75 ---~~~~~~~~~v~~~-~~~~~~~l~~~~~d---g~v~v~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~-~d~ 145 (203)
.+.. ... ...+ ++|+|.+++..... +.+...|..++..... ...... ....+..+|+|.++.+.. ..+
T Consensus 199 ~~~~~~~-~~~-P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~ 275 (381)
T COG3391 199 VGSLVGV-GTG-PAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGG 275 (381)
T ss_pred ccccccc-CCC-CceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCC
Confidence 1221 222 3344 79999987776654 5899999888776655 333322 356789999999987774 457
Q ss_pred cEEEEeCCCccc
Q 028802 146 MLKLWDLDDILK 157 (203)
Q Consensus 146 ~i~iwd~~~~~~ 157 (203)
.+.+.|..+...
T Consensus 276 ~V~vid~~~~~v 287 (381)
T COG3391 276 TVSVIDGATDRV 287 (381)
T ss_pred eEEEEeCCCCce
Confidence 888888877543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.21 E-value=9.3e-05 Score=61.17 Aligned_cols=154 Identities=15% Similarity=0.190 Sum_probs=98.1
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccc-EEEEEEeeCCCEEEEecCCC-----eEEEEEcCCc-----c
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEE-LTSVVLMKNGRKVVCGSQSG-----TVLLYSWGYF-----K 70 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-i~~l~~~~~~~~l~~~~~d~-----~i~v~d~~~~-----~ 70 (203)
.|++.+..++.|+.+|.|.+.+-. -+.+..++.+... |..+-...+..+|++.+.|. .+++|++... .
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 478889999999999999888733 2344666666555 44444334446777766653 5899999632 1
Q ss_pred ccc---eeee-c--CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEcc---CCceeeeeccCCCcceEEEEEeCCCCeEEE
Q 028802 71 DCS---DRFV-G--LSPNSVDAL-LKLDEDRVITGSENGLISLVGIL---PNRIIQPIAEHSEYPIESLALSHDRKFLGS 140 (203)
Q Consensus 71 ~~~---~~~~-~--~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 140 (203)
.++ ..+. . ..+.++.++ .+.+-+.+++|-.+|.|..+.-. .......+......+|+.+++..++..++.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 222 1111 0 023455666 68888999999999999888532 111112222222348999999999887555
Q ss_pred EeCCCcEEEEeCCCcc
Q 028802 141 ISHDSMLKLWDLDDIL 156 (203)
Q Consensus 141 ~~~d~~i~iwd~~~~~ 156 (203)
..+-..|.+|.+.+..
T Consensus 189 v~Tt~~V~~y~l~gr~ 204 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRT 204 (933)
T ss_pred EEecceeEEEEecCCC
Confidence 5556688999887444
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=6.5e-05 Score=62.28 Aligned_cols=67 Identities=13% Similarity=0.191 Sum_probs=60.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~ 67 (203)
++|+|..-.|+.|-..|.+.+|...+.+.......|..+|..+.|+++|..++++..-|.+.+|...
T Consensus 65 LCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 65 LCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 5799988888999999999999988877777778899999999999999999999999999999765
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00041 Score=54.45 Aligned_cols=137 Identities=12% Similarity=0.083 Sum_probs=87.8
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeE
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~ 86 (203)
+..++.++.++.+..+|..+|+.+....... ...+. ..+..|+.++.++.+..+|..+....+..-.. .......
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~--~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~s 330 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYGS--VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDL-LHRLLTA 330 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCCC--ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEccccc-CCCcccC
Confidence 4566777788999999999998776654221 11222 24667778888999999998754332221111 1111111
Q ss_pred EEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEE-EEEeCCCCeEEEEeCCCcEEEEeC
Q 028802 87 LLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIES-LALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 87 ~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
.. ..+..++.++.+|.|+++|..+|+.+........ .+.+ ..+ .+..|+.++.+|.|+.++.
T Consensus 331 p~-v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~-~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 331 PV-LYNGYLVVGDSEGYLHWINREDGRFVAQQKVDSS-GFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CE-EECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC-cceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 11 1356788899999999999999998877654322 2322 222 2457888899999998865
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00011 Score=57.96 Aligned_cols=145 Identities=13% Similarity=0.180 Sum_probs=96.8
Q ss_pred cCCEE-EEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCC-------EEEEecCCCeEEEEEcCCccc-cceee
Q 028802 6 DAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR-------KVVCGSQSGTVLLYSWGYFKD-CSDRF 76 (203)
Q Consensus 6 ~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~-------~l~~~~~d~~i~v~d~~~~~~-~~~~~ 76 (203)
+.++| ..+.....|+-.|+..|+.+.....+.. |.-+.+.|+.. .-+.|-.+..|.-||.+..+. .+...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 44444 3455557788999999999888777655 66677777542 223455678899999885443 22222
Q ss_pred ec--C-CCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 77 VG--L-SPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 77 ~~--~-~~~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
.+ + ......|.......+|++|+.+|.|++||--..+....+++- +.+|..|..+.+|.+|+..+ +..|.+-++.
T Consensus 423 q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgL-G~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGL-GDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred eccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhccccc-CCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 22 0 233455555556678999999999999996322334445665 44899999999999987665 5566666653
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00054 Score=43.11 Aligned_cols=101 Identities=16% Similarity=0.223 Sum_probs=69.3
Q ss_pred EEEEEEee---CC-CEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCcee
Q 028802 40 LTSVVLMK---NG-RKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRII 115 (203)
Q Consensus 40 i~~l~~~~---~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~ 115 (203)
|++|++.. +| +.|++|+.|..|++|+-. ..+..+.. ...+.++..-.+..++.+..+|+|-+|+-. .-+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~---e~~~Ei~e--~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~--~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD---EIVAEITE--TDKVTSLCSLGGGRFAYALANGTVGVYDRS--QRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC---cEEEEEec--ccceEEEEEcCCCEEEEEecCCEEEEEeCc--cee
Confidence 56666654 32 689999999999999843 56666664 667777755455789999999999999853 333
Q ss_pred eeeccCCCcceEEEEEeC---CC-CeEEEEeCCCcEEE
Q 028802 116 QPIAEHSEYPIESLALSH---DR-KFLGSISHDSMLKL 149 (203)
Q Consensus 116 ~~~~~~~~~~i~~~~~~~---~~-~~l~~~~~d~~i~i 149 (203)
..+... ..+.++++.. || ..|++|-.+|.|-+
T Consensus 75 WRiKSK--~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 75 WRIKSK--NQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeeccC--CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 444433 2456665443 33 36888888888753
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.4e-05 Score=59.02 Aligned_cols=127 Identities=13% Similarity=0.148 Sum_probs=82.7
Q ss_pred cccccCCEEEEE--cCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCC---CeEEEEEcCCccccceee
Q 028802 2 TFAADAMKLLGT--SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS---GTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 2 ~~sp~~~~l~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~ 76 (203)
+|+|.++.+++. ...-.+.+++++.+ +...+. ...=..+.|+|.++++++++.+ |.+.+||......+...+
T Consensus 281 ~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P--e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~ 357 (561)
T COG5354 281 TWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP--EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAF 357 (561)
T ss_pred eecccCCceeEEecccccceeecccccc-eEEecC--CcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEe
Confidence 689988876554 46788999999876 433332 3444567899999999987764 789999986433344355
Q ss_pred ecCCCCceeEEEeeCCCEEEEEcC------CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe
Q 028802 77 VGLSPNSVDALLKLDEDRVITGSE------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 77 ~~~~~~~v~~~~~~~~~~l~~~~~------dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 142 (203)
.+ .+.-.|=|+|++.++.+... |..|.|||+... ... ..+.+.|.|.+++..+.+
T Consensus 358 ~~--~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~-~~f--------el~~~~W~p~~~~~ttsS 418 (561)
T COG5354 358 NG--LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA-KVF--------ELTNITWDPSGQYVTTSS 418 (561)
T ss_pred ec--CCceEeeccCCceEEEecCCCcccccCcceEEEEecCc-hhh--------hhhhccccCCcccceeec
Confidence 54 22222239999999988753 677899997532 221 234455655555544443
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.7e-05 Score=62.07 Aligned_cols=109 Identities=16% Similarity=0.113 Sum_probs=82.2
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEE-eecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccc----eeee
Q 028802 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQT-RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS----DRFV 77 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~----~~~~ 77 (203)
++..+++++.|+.-|.|++|+-..+.... ...+....+..+..+++..+++.|+..|.|.++-+......- ..+.
T Consensus 41 ~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d 120 (726)
T KOG3621|consen 41 VDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCD 120 (726)
T ss_pred eecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecccc
Confidence 45678899999999999999977765432 222344556667788888899999999999999886532221 1122
Q ss_pred cCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC
Q 028802 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP 111 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~ 111 (203)
..|...|+++ |++++..+++|...|.|.+.-+.+
T Consensus 121 ~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 121 KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 2267789999 999999999999999998877655
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=6e-05 Score=61.78 Aligned_cols=103 Identities=8% Similarity=0.025 Sum_probs=76.4
Q ss_pred EEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEec---------CCCeEEEEEcCCcccc-ceeeec
Q 028802 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS---------QSGTVLLYSWGYFKDC-SDRFVG 78 (203)
Q Consensus 9 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~---------~d~~i~v~d~~~~~~~-~~~~~~ 78 (203)
++|.|...|+|.|+|+.++.....+-.|...|.++.|.....++-.+. .-+.+.+-|++++-.. .+.+.+
T Consensus 439 LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~ 518 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQK 518 (1062)
T ss_pred eEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCC
Confidence 578899999999999999988888889999999999986655443222 1235667788753211 111222
Q ss_pred CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC
Q 028802 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILP 111 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~ 111 (203)
....+|..+ .+..+.+++..-.+..+-+||+++
T Consensus 519 ~despI~~irvS~~~~yLai~Fr~~plEiwd~kt 552 (1062)
T KOG1912|consen 519 PDESPIRAIRVSSSGRYLAILFRREPLEIWDLKT 552 (1062)
T ss_pred CCcCcceeeeecccCceEEEEecccchHHHhhcc
Confidence 145678888 899999999999999999999854
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=8.5e-05 Score=60.11 Aligned_cols=115 Identities=16% Similarity=0.138 Sum_probs=81.5
Q ss_pred ccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE--EeeCCCEEEEEcCCCcEEEEEccCCce-
Q 028802 38 EELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL--LKLDEDRVITGSENGLISLVGILPNRI- 114 (203)
Q Consensus 38 ~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~l~~~~~dg~v~v~d~~~~~~- 114 (203)
..|.--++...+.+++.|+.-|.+++|.-.. +.....-.. ....+.+. .++...+++.|+..|.|.++.+..+.+
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~-~~~~~~~~~-~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHT-GEMRKLKNE-GATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCc-hhhhccccc-CccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 3444445566789999999999999998753 333222121 12223333 689999999999999999998875422
Q ss_pred --eeeeccCC--CcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 115 --IQPIAEHS--EYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 115 --~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
...-..+. ...|++++|++++..+++|...|+|..-.+.+
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 11112221 34899999999999999999999999988887
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00013 Score=60.84 Aligned_cols=138 Identities=17% Similarity=0.209 Sum_probs=100.0
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeE
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~ 86 (203)
+..++.|+-...+..+|+.+.+..+...-..+.|.-+. .+++.+.+|...|+|.+-|.++ .+.++.+.. |.+.+..
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s-~~~iht~~a-Hs~siSD 222 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNS-FETIHTFDA-HSGSISD 222 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCc-Cceeeeeec-cccceee
Confidence 44566676667788899988776655544333454443 3678999999999999999974 578899999 9888765
Q ss_pred EEeeCCCEEEEEcC---------CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCC-CeEEEEeCCCcEEEEe
Q 028802 87 LLKLDEDRVITGSE---------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWD 151 (203)
Q Consensus 87 ~~~~~~~~l~~~~~---------dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd 151 (203)
+ +-.|++|++++. |..|.|||++..+.+..+..+.+ ..-+.|+|.= ..+++++..|...+-|
T Consensus 223 f-Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~--P~flrf~Psl~t~~~V~S~sGq~q~vd 294 (1118)
T KOG1275|consen 223 F-DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG--PQFLRFHPSLTTRLAVTSQSGQFQFVD 294 (1118)
T ss_pred e-eccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccC--chhhhhcccccceEEEEecccceeecc
Confidence 4 778899998864 55689999998888777766643 2345677743 4566666677777777
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00029 Score=54.46 Aligned_cols=92 Identities=9% Similarity=0.042 Sum_probs=58.9
Q ss_pred cccCCEEEEEc---------CCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce
Q 028802 4 AADAMKLLGTS---------GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD 74 (203)
Q Consensus 4 sp~~~~l~~~~---------~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~ 74 (203)
|||+++++... ..+.+.|||+.+++....... ...+....|+|+|+.++... ++.|++++.... ...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~--~~~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATG--QET 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTS--EEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCC--CeE
Confidence 78999887742 246789999999866443333 56788899999999998875 578999987532 112
Q ss_pred eeecCC-----------------CCceeEE-EeeCCCEEEEEc
Q 028802 75 RFVGLS-----------------PNSVDAL-LKLDEDRVITGS 99 (203)
Q Consensus 75 ~~~~~~-----------------~~~v~~~-~~~~~~~l~~~~ 99 (203)
.++.-. -..-..+ |+|++++|+...
T Consensus 77 ~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 77 QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 221100 1123456 899999888654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.95 E-value=4e-05 Score=37.77 Aligned_cols=38 Identities=39% Similarity=0.788 Sum_probs=31.8
Q ss_pred ceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028802 113 RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 113 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 151 (203)
+++..+..|.. .|.++.|++.+.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTG-PVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCC-ceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44556666644 899999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.94 E-value=4e-05 Score=37.78 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=32.8
Q ss_pred eEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEE
Q 028802 28 TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65 (203)
Q Consensus 28 ~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d 65 (203)
+....+..|...|.++.|.+.+..+++++.++.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44566667888999999999999999999999999995
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0014 Score=51.42 Aligned_cols=145 Identities=10% Similarity=0.008 Sum_probs=89.9
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcc-cEE------EEE--EeeCCCEEEEecCCCeEEEEEcCCccccceee
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE-ELT------SVV--LMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-~i~------~l~--~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 76 (203)
.+..+++++.++.|.-+|..+|+.+........ .+. .+. ..-.+..++.++.++.++.+|..+....+ ..
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W-~~ 146 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAW-QT 146 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcc-cc
Confidence 356777888889999999999998877653221 000 000 01135677788889999999987644433 33
Q ss_pred ecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcce-----EEEEEeCCCCeEEEEeCCCcEEEE
Q 028802 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPI-----ESLALSHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~l~~~~~d~~i~iw 150 (203)
.. . ..+.+- .- .+..++.++.++.|+.+|..+|+.+........ .+ .+... .+..++.++.++.+..+
T Consensus 147 ~~-~-~~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~ 220 (394)
T PRK11138 147 KV-A-GEALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVP-SLTLRGESAPAT--AFGGAIVGGDNGRVSAV 220 (394)
T ss_pred cC-C-CceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCC-cccccCCCCCEE--ECCEEEEEcCCCEEEEE
Confidence 32 1 222221 11 245677788899999999999999877754311 10 11111 12346667778888888
Q ss_pred eCCCccc
Q 028802 151 DLDDILK 157 (203)
Q Consensus 151 d~~~~~~ 157 (203)
|..++..
T Consensus 221 d~~~G~~ 227 (394)
T PRK11138 221 LMEQGQL 227 (394)
T ss_pred EccCChh
Confidence 8877654
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0001 Score=59.02 Aligned_cols=94 Identities=12% Similarity=0.096 Sum_probs=72.0
Q ss_pred cccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCcee-EE-EeeCCCEEEEEcCCCcEEEEEccCCce
Q 028802 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD-AL-LKLDEDRVITGSENGLISLVGILPNRI 114 (203)
Q Consensus 37 ~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~-~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~ 114 (203)
...+..+.|+|.-..++++..+|.+.++-+. ..+ +-.+.- +..+++ ++ |.|||+.|++|-.||+|++.|+.++..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qR-lwtip~-p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQR-LWTIPI-PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cce-eEeccC-CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 3457788999999999999999999988876 333 334443 444555 78 999999999999999999999999887
Q ss_pred eeeeccCCCcceEEEEEeC
Q 028802 115 IQPIAEHSEYPIESLALSH 133 (203)
Q Consensus 115 ~~~~~~~~~~~i~~~~~~~ 133 (203)
+.........+|.++.|++
T Consensus 97 l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeccccccccchheeeccc
Confidence 7663222233688888863
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0025 Score=53.14 Aligned_cols=149 Identities=14% Similarity=0.197 Sum_probs=94.2
Q ss_pred CEEEEEcCCC-----eEEEEEcCC------CeEE---Eee--c--CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCc
Q 028802 8 MKLLGTSGDG-----TLSVCNLRK------NTVQ---TRS--E--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69 (203)
Q Consensus 8 ~~l~~~~~d~-----~i~v~d~~~------~~~~---~~~--~--~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~ 69 (203)
++|++.+.|+ .|+||++.. +.++ ..+ . ....++.+++.+.+-..+++|-.+|.|.++.-...
T Consensus 78 ~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~ 157 (933)
T KOG2114|consen 78 NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDIL 157 (933)
T ss_pred eEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcch
Confidence 5677766554 589999863 2233 111 1 23578899999999889999999999998843211
Q ss_pred --cccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCcee-eeeccCCCcceEEEEEeCCCCeEEEEeCCC
Q 028802 70 --KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRII-QPIAEHSEYPIESLALSHDRKFLGSISHDS 145 (203)
Q Consensus 70 --~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 145 (203)
......+......+|+.+ +..++..++.+..-..|.+|.+....+. ..+..+ +....|.++++....+++++ +.
T Consensus 158 RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~-G~~lnCss~~~~t~qfIca~-~e 235 (933)
T KOG2114|consen 158 RDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNN-GISLNCSSFSDGTYQFICAG-SE 235 (933)
T ss_pred hccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccC-CccceeeecCCCCccEEEec-Cc
Confidence 111111111146789999 7666666455555567889998743333 335444 55788888887655455444 46
Q ss_pred cEEEEeCCCcccC
Q 028802 146 MLKLWDLDDILKG 158 (203)
Q Consensus 146 ~i~iwd~~~~~~~ 158 (203)
.|.+|+.....+.
T Consensus 236 ~l~fY~sd~~~~c 248 (933)
T KOG2114|consen 236 FLYFYDSDGRGPC 248 (933)
T ss_pred eEEEEcCCCccee
Confidence 7999998765543
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.004 Score=48.75 Aligned_cols=149 Identities=13% Similarity=0.106 Sum_probs=100.4
Q ss_pred cccccCCEEEE-EcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC---CCeEEEEEcCCccccceeee
Q 028802 2 TFAADAMKLLG-TSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 2 ~~sp~~~~l~~-~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~ 77 (203)
++++.++.++. ...++.|.+.|..+......+.... ....++++|++..++++.. ++.+.+.|..+. .......
T Consensus 80 ~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~-~~~~~~~ 157 (381)
T COG3391 80 AVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN-KVTATIP 157 (381)
T ss_pred eeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCC-eEEEEEe
Confidence 46677775544 4456899999987776666554322 5678999999988877665 678888887653 3444443
Q ss_pred cCCCCceeEE-EeeCCCEEEEEc-CCCcEEEEEccCCceee-----eeccCCCcceEEEEEeCCCCeEEEEeCC---CcE
Q 028802 78 GLSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRIIQ-----PIAEHSEYPIESLALSHDRKFLGSISHD---SML 147 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~-~dg~v~v~d~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i 147 (203)
. ...+ ..+ ++|+|..++... .++.|.+.|........ .+... . ....+.++|+|.++...... +.+
T Consensus 158 v-G~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-~-~P~~i~v~~~g~~~yV~~~~~~~~~v 233 (381)
T COG3391 158 V-GNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-T-GPAGIAVDPDGNRVYVANDGSGSNNV 233 (381)
T ss_pred c-CCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-C-CCceEEECCCCCEEEEEeccCCCceE
Confidence 3 3344 445 899999777666 67889999976654442 12222 1 34678999999976655533 588
Q ss_pred EEEeCCCcc
Q 028802 148 KLWDLDDIL 156 (203)
Q Consensus 148 ~iwd~~~~~ 156 (203)
.+.|..+..
T Consensus 234 ~~id~~~~~ 242 (381)
T COG3391 234 LKIDTATGN 242 (381)
T ss_pred EEEeCCCce
Confidence 888887754
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.86 E-value=9e-05 Score=56.29 Aligned_cols=93 Identities=13% Similarity=0.104 Sum_probs=71.9
Q ss_pred EEEEEcCCccccceeeecCCCCceeEE-EeeCCC-EEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCC-e
Q 028802 61 VLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDED-RVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-F 137 (203)
Q Consensus 61 i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~-~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~ 137 (203)
+++.+..+. ...+.+.. +...|..+ |+|..+ ++..++.+..|.|.|+++......+..+ . .+++++|.-+.. +
T Consensus 175 v~~l~~~~f-kssq~lp~-~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~-~~wSC~wDlde~h~ 250 (463)
T KOG1645|consen 175 VQKLESHDF-KSSQILPG-EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-N-QIWSCCWDLDERHV 250 (463)
T ss_pred eEEeccCCc-chhhcccc-cchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-C-CceeeeeccCCcce
Confidence 444444322 23344555 67778999 899877 6778899999999999999888888888 4 799999998764 5
Q ss_pred EEEEeCCCcEEEEeCCCccc
Q 028802 138 LGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 138 l~~~~~d~~i~iwd~~~~~~ 157 (203)
|+.|-..|.|.|||++..+.
T Consensus 251 IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 251 IYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred eEEeccCceEEEEEccCCCc
Confidence 67777999999999987653
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=3.7e-06 Score=67.11 Aligned_cols=150 Identities=15% Similarity=0.229 Sum_probs=91.1
Q ss_pred Ccccc-cCCEEEEEc----CCCeEEEEEcCCC--eE--EEeecC-CcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcc
Q 028802 1 MTFAA-DAMKLLGTS----GDGTLSVCNLRKN--TV--QTRSEF-SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK 70 (203)
Q Consensus 1 l~~sp-~~~~l~~~~----~d~~i~v~d~~~~--~~--~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~ 70 (203)
++|++ |.+.||+|- .|..+.|||+.++ .+ ...+.+ ......+++|..+.+++++|.....+.++|++...
T Consensus 108 lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~ 187 (783)
T KOG1008|consen 108 LAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL 187 (783)
T ss_pred cccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh
Confidence 35555 455666663 3567999999865 11 111211 23345588898888888898888899999998432
Q ss_pred ccceeeecCCCCceeEE-Eee-CCCEEEEEcCCCcEEEEE-ccC-CceeeeeccCCC---cceEEEEEeCCCC-eEEEEe
Q 028802 71 DCSDRFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVG-ILP-NRIIQPIAEHSE---YPIESLALSHDRK-FLGSIS 142 (203)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~dg~v~v~d-~~~-~~~~~~~~~~~~---~~i~~~~~~~~~~-~l~~~~ 142 (203)
.....+ ....+..+ ..| .++++++- .+|.|.+|| .+. ..++.++...+. ..+..++|.|... .+++..
T Consensus 188 ~~~~sv---nTk~vqG~tVdp~~~nY~cs~-~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~ 263 (783)
T KOG1008|consen 188 DSVSSV---NTKYVQGITVDPFSPNYFCSN-SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLS 263 (783)
T ss_pred hhhhhh---hhhhcccceecCCCCCceecc-ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhc
Confidence 222222 22234444 566 55566554 499999999 332 223333322211 1488999999654 445555
Q ss_pred -CCCcEEEEeCCC
Q 028802 143 -HDSMLKLWDLDD 154 (203)
Q Consensus 143 -~d~~i~iwd~~~ 154 (203)
..++|+.+|+..
T Consensus 264 RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 264 RDSITIRLYDICV 276 (783)
T ss_pred cCcceEEEecccc
Confidence 567899998754
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0031 Score=54.49 Aligned_cols=153 Identities=12% Similarity=0.123 Sum_probs=94.6
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcC----Cc--------
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG----YF-------- 69 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~----~~-------- 69 (203)
.|..+.+.++.+...|.|.+-|..+... .....-...|.+++|+||+..++..+..+++.+-.-. ..
T Consensus 75 ~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~ 153 (1265)
T KOG1920|consen 75 QFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDE 153 (1265)
T ss_pred EEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccc
Confidence 3455677788888889999988776533 2222335679999999999999888877777664321 00
Q ss_pred ----------cccceeeec---------------------CCCCceeEE-EeeCCCEEEEE-----cCCCcEEEEEccCC
Q 028802 70 ----------KDCSDRFVG---------------------LSPNSVDAL-LKLDEDRVITG-----SENGLISLVGILPN 112 (203)
Q Consensus 70 ----------~~~~~~~~~---------------------~~~~~v~~~-~~~~~~~l~~~-----~~dg~v~v~d~~~~ 112 (203)
+..-..|.+ .+... ..+ |--+|.++++. ...+.|+|||.+ |
T Consensus 154 ~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~-~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g 231 (1265)
T KOG1920|consen 154 RKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHK-TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-G 231 (1265)
T ss_pred cccccceecccccceeeecchhhhcccccccccccccchhhccCC-ceEEEccCCcEEEEEEEeccCCceeEEEeccc-c
Confidence 010111211 00111 235 88899998873 233789999966 4
Q ss_pred ceeeeeccCCCcceEEEEEeCCCCeEEEEe---CCCcEEEEeCCCcccC
Q 028802 113 RIIQPIAEHSEYPIESLALSHDRKFLGSIS---HDSMLKLWDLDDILKG 158 (203)
Q Consensus 113 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~ 158 (203)
..- .......+-=.+++|-|.|..+++.. .|+.|.+|.-.....+
T Consensus 232 ~Ln-s~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg 279 (1265)
T KOG1920|consen 232 ALN-STSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHG 279 (1265)
T ss_pred hhh-cccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccc
Confidence 322 22111111335789999999998755 4567999986544443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0001 Score=61.17 Aligned_cols=107 Identities=19% Similarity=0.243 Sum_probs=80.4
Q ss_pred EEEEeeCCCEEEEecC----CCeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceee
Q 028802 42 SVVLMKNGRKVVCGSQ----SGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQ 116 (203)
Q Consensus 42 ~l~~~~~~~~l~~~~~----d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~ 116 (203)
-+.|+|...++++++. .|.|-||-= + +++-..+. .+-.++++ |+|..-.++.|-.-|.+.+|...+.+...
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfad-t-GEPqr~Vt--~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht 95 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFAD-T-GEPQRDVT--YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT 95 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEec-C-CCCCcccc--cceehhhhccChHHHHHhhccccceeEEEecCCceeee
Confidence 3578998888887653 578888742 2 34333222 23334556 89998888899899999999987766555
Q ss_pred eeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 117 PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 117 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
....| ..+|..+.|+|+|..++++..-|.+.+|...
T Consensus 96 v~~th-~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 96 VVETH-PAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eccCC-CCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 55556 4589999999999999999999999999876
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0014 Score=54.07 Aligned_cols=144 Identities=15% Similarity=0.074 Sum_probs=80.4
Q ss_pred cccccCCEEEEEc------CC--CeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCC------------CeE
Q 028802 2 TFAADAMKLLGTS------GD--GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS------------GTV 61 (203)
Q Consensus 2 ~~sp~~~~l~~~~------~d--~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d------------~~i 61 (203)
++||+|+.+++.. .| ..|++++... .......+ .......|+|+|..|++.... +.+
T Consensus 356 aiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql 432 (591)
T PRK13616 356 ALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQL 432 (591)
T ss_pred eECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cceeeecC--CCCCCceECCCCCceEEEecCcceEEEeccCCCceE
Confidence 5789999887664 23 3566666532 22222222 237788999998877766432 233
Q ss_pred EEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEE---EEccCCce-e---eeeccCCCcceEEEEEeC
Q 028802 62 LLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISL---VGILPNRI-I---QPIAEHSEYPIESLALSH 133 (203)
Q Consensus 62 ~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v---~d~~~~~~-~---~~~~~~~~~~i~~~~~~~ 133 (203)
.+.++.. +.... . ....|..+ |+|||..++... ++.|++ -....|.. + ..+.......+.++.|..
T Consensus 433 ~~~~vd~-ge~~~---~-~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~ 506 (591)
T PRK13616 433 ARTPVDA-SAVAS---R-VPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRT 506 (591)
T ss_pred EEEeccC-chhhh---c-cCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEec
Confidence 3333321 11111 2 34568888 999999998866 467776 33334431 1 012111122357899999
Q ss_pred CCCeEEEEeCCCc--EEEEeCCCc
Q 028802 134 DRKFLGSISHDSM--LKLWDLDDI 155 (203)
Q Consensus 134 ~~~~l~~~~~d~~--i~iwd~~~~ 155 (203)
++..+ ++..++. +...++...
T Consensus 507 ~~~L~-V~~~~~~~~v~~v~vDG~ 529 (591)
T PRK13616 507 GDSLV-VGRSDPEHPVWYVNLDGS 529 (591)
T ss_pred CCEEE-EEecCCCCceEEEecCCc
Confidence 98855 4443333 444445433
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.011 Score=45.23 Aligned_cols=143 Identities=13% Similarity=0.126 Sum_probs=85.0
Q ss_pred CCEEEEEcC----------CCeEEEEEcCCC----eEEEee--cCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcc
Q 028802 7 AMKLLGTSG----------DGTLSVCNLRKN----TVQTRS--EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK 70 (203)
Q Consensus 7 ~~~l~~~~~----------d~~i~v~d~~~~----~~~~~~--~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~ 70 (203)
..+|++|+. .|.|.++.+... ..+..+ ....++|++++-- .+. |+++. .+.|.+|++....
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc
Confidence 356776642 288999999873 122211 2336778888755 444 44443 4889999997543
Q ss_pred ccceeeecCCCCceeEEEeeCCCEEEEEcCCCcEEEEEccC-Cceeeee-ccCCCcceEEEEEeCCCCeEEEEeCCCcEE
Q 028802 71 DCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILP-NRIIQPI-AEHSEYPIESLALSHDRKFLGSISHDSMLK 148 (203)
Q Consensus 71 ~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~-~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 148 (203)
.....-.......+.++ ...+++|++|.....|.++.... ...+..+ +......++++.+-+++..++.+..+|.|.
T Consensus 119 ~l~~~~~~~~~~~i~sl-~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~ 197 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSL-SVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLF 197 (321)
T ss_dssp SEEEEEEE-BSSSEEEE-EEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEE
T ss_pred cchhhheecceEEEEEE-eccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEE
Confidence 12222111012233343 44577999999888888875543 2323222 222223688888887777888999999999
Q ss_pred EEeCC
Q 028802 149 LWDLD 153 (203)
Q Consensus 149 iwd~~ 153 (203)
++...
T Consensus 198 ~l~~~ 202 (321)
T PF03178_consen 198 VLRYN 202 (321)
T ss_dssp EEEE-
T ss_pred EEEEC
Confidence 99884
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0046 Score=46.75 Aligned_cols=136 Identities=13% Similarity=0.107 Sum_probs=82.2
Q ss_pred ccccCCEEEEEcC-----------CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC-CCeEEEEEcCC-c
Q 028802 3 FAADAMKLLGTSG-----------DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGY-F 69 (203)
Q Consensus 3 ~sp~~~~l~~~~~-----------d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d~~i~v~d~~~-~ 69 (203)
..|+|.+.+.... -|.|+.++. .+..+..+..+-..-+.|+||||++.|+.+.. .+.|..|++.. .
T Consensus 118 v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~ 196 (307)
T COG3386 118 VDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPAT 196 (307)
T ss_pred EcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCccc
Confidence 4566665554433 133444443 45555555555566678999999988877665 47888887752 1
Q ss_pred ccc-----ceeeecCCCCceeEE-EeeCCCEEEEEcCCC-cEEEEEccCCceeeeeccCCCcceEEEEEe-CCCCeEEEE
Q 028802 70 KDC-----SDRFVGLSPNSVDAL-LKLDEDRVITGSENG-LISLVGILPNRIIQPIAEHSEYPIESLALS-HDRKFLGSI 141 (203)
Q Consensus 70 ~~~-----~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg-~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~ 141 (203)
... ...+.. ..+..-.+ ...+|.+.+++...| .|.+|+.. |+.+..+..+.. .+++++|- |+.+.|+..
T Consensus 197 g~~~~~~~~~~~~~-~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~-~~t~~~FgG~~~~~L~iT 273 (307)
T COG3386 197 GPIGGRRGFVDFDE-EPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVK-RPTNPAFGGPDLNTLYIT 273 (307)
T ss_pred CccCCcceEEEccC-CCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCC-CCccceEeCCCcCEEEEE
Confidence 111 111111 22333333 566778776555554 89999988 999888887743 67888885 455555444
Q ss_pred e
Q 028802 142 S 142 (203)
Q Consensus 142 ~ 142 (203)
+
T Consensus 274 s 274 (307)
T COG3386 274 S 274 (307)
T ss_pred e
Confidence 3
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0081 Score=47.52 Aligned_cols=152 Identities=15% Similarity=0.114 Sum_probs=83.5
Q ss_pred cccccCCEEEEE-cCC----CeEEEEEcCCCeEEEee-cCCcccEEEEEEeeCCCEEEEecCC-----------CeEEEE
Q 028802 2 TFAADAMKLLGT-SGD----GTLSVCNLRKNTVQTRS-EFSEEELTSVVLMKNGRKVVCGSQS-----------GTVLLY 64 (203)
Q Consensus 2 ~~sp~~~~l~~~-~~d----~~i~v~d~~~~~~~~~~-~~~~~~i~~l~~~~~~~~l~~~~~d-----------~~i~v~ 64 (203)
++||+|++||.+ +.. ..|+++|+.+++.+... .. .....+.|.++++.|+....+ ..|+.|
T Consensus 130 ~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~ 207 (414)
T PF02897_consen 130 SVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRH 207 (414)
T ss_dssp EETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEE
T ss_pred eECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEE
Confidence 579999998765 222 46999999999765422 22 122349999998887765432 237777
Q ss_pred EcCCcccc-ceeeecCCCCc--eeEE-EeeCCCEEEEEcC---C-CcEEEEEccCC----ceeeeeccCCCcceEEEEEe
Q 028802 65 SWGYFKDC-SDRFVGLSPNS--VDAL-LKLDEDRVITGSE---N-GLISLVGILPN----RIIQPIAEHSEYPIESLALS 132 (203)
Q Consensus 65 d~~~~~~~-~~~~~~~~~~~--v~~~-~~~~~~~l~~~~~---d-g~v~v~d~~~~----~~~~~~~~~~~~~i~~~~~~ 132 (203)
.+.+.... ...+.. .... ...+ .++++++++.... + ..+++.++..+ .....+..... .+....-+
T Consensus 208 ~~gt~~~~d~lvfe~-~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~-~~~~~v~~ 285 (414)
T PF02897_consen 208 KLGTPQSEDELVFEE-PDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED-GVEYYVDH 285 (414)
T ss_dssp ETTS-GGG-EEEEC--TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS-S-EEEEEE
T ss_pred ECCCChHhCeeEEee-cCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC-ceEEEEEc
Confidence 77643322 223333 3333 2344 6899999876443 2 35788888764 22233333223 33333323
Q ss_pred CCCCeEEEEe---CCCcEEEEeCCCccc
Q 028802 133 HDRKFLGSIS---HDSMLKLWDLDDILK 157 (203)
Q Consensus 133 ~~~~~l~~~~---~d~~i~iwd~~~~~~ 157 (203)
..+.+++... ..+.|...++.....
T Consensus 286 ~~~~~yi~Tn~~a~~~~l~~~~l~~~~~ 313 (414)
T PF02897_consen 286 HGDRLYILTNDDAPNGRLVAVDLADPSP 313 (414)
T ss_dssp ETTEEEEEE-TT-TT-EEEEEETTSTSG
T ss_pred cCCEEEEeeCCCCCCcEEEEeccccccc
Confidence 3444444332 345677777766553
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00011 Score=61.24 Aligned_cols=123 Identities=11% Similarity=0.111 Sum_probs=91.6
Q ss_pred EEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCC-C-cEEE
Q 028802 30 QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSEN-G-LISL 106 (203)
Q Consensus 30 ~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d-g-~v~v 106 (203)
...+..+....++++|+-+.++|++|+..|.|++|++.+ +........ |..+++.+ -+.+|..+++.+.- . ...+
T Consensus 1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~s-G~~e~s~nc-H~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSS-GSMEESVNC-HQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred chhhhccccceeeEEeecCCceEEeeeccceEEEEEccC-ccccccccc-cccccccccccCCcceeeeeccccCchHHH
Confidence 345566778899999999999999999999999999975 677777888 99999988 67788877765543 2 4668
Q ss_pred EEccC-CceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028802 107 VGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 107 ~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
|++.+ +.....+. .-.++.|+..-+.-+.|+.-....+||+.|+.+-+
T Consensus 1172 W~~~s~~~~~Hsf~-----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~ 1220 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFD-----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQ 1220 (1516)
T ss_pred hccccccCcccccc-----ccceeehhhhHHHHHhcccccceEEEecccCcHHH
Confidence 98764 33444443 34667888765555566655678999998886543
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.02 Score=45.32 Aligned_cols=48 Identities=10% Similarity=0.218 Sum_probs=35.7
Q ss_pred eEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcC
Q 028802 18 TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 18 ~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~ 67 (203)
.|.||+.. |+++..+.-..+.|.++.|+.+ ..|++...+|.+++||+.
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCC
Confidence 48888865 4455666554588999999875 455566689999999984
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.017 Score=42.99 Aligned_cols=143 Identities=15% Similarity=0.155 Sum_probs=87.9
Q ss_pred cccCCEEEEEcCCCeEEEEEcCCC-eEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce--------
Q 028802 4 AADAMKLLGTSGDGTLSVCNLRKN-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD-------- 74 (203)
Q Consensus 4 sp~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-------- 74 (203)
...++.|+.|+.+| |++++.... ....... ...|..+...|.-+.|++-+ |+.++++++........
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence 34678899998888 999998332 2222222 23499999999877777665 49999999864221110
Q ss_pred ------eeecCCCCceeEEEe----eCCCEEEEEcCCCcEEEEEccCC-----ceeeeeccCCCcceEEEEEeCCCCeEE
Q 028802 75 ------RFVGLSPNSVDALLK----LDEDRVITGSENGLISLVGILPN-----RIIQPIAEHSEYPIESLALSHDRKFLG 139 (203)
Q Consensus 75 ------~~~~~~~~~v~~~~~----~~~~~l~~~~~dg~v~v~d~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~ 139 (203)
.+.. ...+.. |. +.+...++......|.+|..... +....+... + .+.+++|. ++.|+
T Consensus 80 ~~~~~~~~~~--~~~v~~-f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-~-~~~~i~~~--~~~i~ 152 (275)
T PF00780_consen 80 SRSLPTKLPE--TKGVSF-FAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-D-PPSSIAFL--GNKIC 152 (275)
T ss_pred cccccccccc--cCCeeE-EeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-C-CcEEEEEe--CCEEE
Confidence 1111 111111 23 34444445555558888876542 455666655 3 68899998 55677
Q ss_pred EEeCCCcEEEEeCCCcccC
Q 028802 140 SISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 140 ~~~~d~~i~iwd~~~~~~~ 158 (203)
.+.. +...+.|+.++...
T Consensus 153 v~~~-~~f~~idl~~~~~~ 170 (275)
T PF00780_consen 153 VGTS-KGFYLIDLNTGSPS 170 (275)
T ss_pred EEeC-CceEEEecCCCCce
Confidence 6664 45888898866543
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0024 Score=55.09 Aligned_cols=110 Identities=15% Similarity=0.165 Sum_probs=70.7
Q ss_pred CcccccCCEEEEE-----cCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC---CCeEEEEEcCCc--c
Q 028802 1 MTFAADAMKLLGT-----SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGYF--K 70 (203)
Q Consensus 1 l~~sp~~~~l~~~-----~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~---d~~i~v~d~~~~--~ 70 (203)
|.|--||+++|+. .....|+|||-. |.+-..-......-.+++|-|.|..+++... ++.|.+|.-+.. +
T Consensus 201 IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg 279 (1265)
T KOG1920|consen 201 ISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHG 279 (1265)
T ss_pred EEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccc
Confidence 4577899998883 233789999976 4433333333444567999999999887543 557888875311 1
Q ss_pred ccceeeecCCCCceeEE-EeeCCCEEEE---EcCCCcEEEEEccCC
Q 028802 71 DCSDRFVGLSPNSVDAL-LKLDEDRVIT---GSENGLISLVGILPN 112 (203)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~~~~~l~~---~~~dg~v~v~d~~~~ 112 (203)
...-.+.. ....+..+ |+.++..|+. ......|++|-+.+.
T Consensus 280 ~f~l~~p~-de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 280 EFVLPFPL-DEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred ccccCCcc-cccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 11112222 33447788 9999988887 444555999987654
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0075 Score=38.05 Aligned_cols=93 Identities=19% Similarity=0.249 Sum_probs=63.0
Q ss_pred cccC-CEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCC
Q 028802 4 AADA-MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (203)
Q Consensus 4 sp~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 82 (203)
.-+| +.|++|+.|..|++|.-. ..+..+.. ...|++|.-... ..++.+..+|+|-+|+-. ...++ ++. ..
T Consensus 11 d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWR-iKS--K~ 81 (111)
T PF14783_consen 11 DGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWR-IKS--KN 81 (111)
T ss_pred CCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeee-ecc--CC
Confidence 3344 579999999999999843 56666654 456777776654 678999999999999853 24443 333 33
Q ss_pred ceeEE--EeeCC---CEEEEEcCCCcEE
Q 028802 83 SVDAL--LKLDE---DRVITGSENGLIS 105 (203)
Q Consensus 83 ~v~~~--~~~~~---~~l~~~~~dg~v~ 105 (203)
.+.++ +..++ +-|++|-.+|.|-
T Consensus 82 ~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 82 QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 45556 33332 3578888888763
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.007 Score=44.01 Aligned_cols=102 Identities=12% Similarity=0.068 Sum_probs=65.0
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeE
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~ 86 (203)
|.+++.|...|.+++.+..+|...+.+.....-=......+++..+..++.|++.+..|..+. .++-..+. .+.+..
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~-~cVykskc--gG~~f~ 139 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTY-GCVYKSKC--GGGTFV 139 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEeccccc-ceEEeccc--CCceec
Confidence 567888999999999999999777766543221122345678999999999999999998753 33333332 222221
Q ss_pred -E-EeeCCCEEEEEcCCCcEEEEEccC
Q 028802 87 -L-LKLDEDRVITGSENGLISLVGILP 111 (203)
Q Consensus 87 -~-~~~~~~~l~~~~~dg~v~v~d~~~ 111 (203)
. ..|-...|+.+...|.|.-....+
T Consensus 140 sP~i~~g~~sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 140 SPVIAPGDGSLYAAITAGAVLAVTKNP 166 (354)
T ss_pred cceecCCCceEEEEeccceEEEEccCC
Confidence 1 355334455555555554444443
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00078 Score=52.17 Aligned_cols=147 Identities=13% Similarity=0.080 Sum_probs=101.6
Q ss_pred cCCEEEEEcCCCeEEEEEcCC--C-eEEEeecCCcccEEEEEEeeCCCEEEEecC-CCeEEEEEcCCccccceeeec-CC
Q 028802 6 DAMKLLGTSGDGTLSVCNLRK--N-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDRFVG-LS 80 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~--~-~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~-~~ 80 (203)
..+++.+++.||.++.|--.. + +.+..+..|-..|.+++.+-++.++.+.+. |..+++||+.+. ..+..+.. .-
T Consensus 19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~-DminmiKL~~l 97 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF-DMINMIKLVDL 97 (558)
T ss_pred hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc-chhhhcccccC
Confidence 356889999999999998543 2 445566778888999999999999999777 999999999753 33222221 01
Q ss_pred CCceeEEEeeCC---CEEEEEcCCCcEEEEEccCCc-ee-eeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 81 PNSVDALLKLDE---DRVITGSENGLISLVGILPNR-II-QPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 81 ~~~v~~~~~~~~---~~l~~~~~dg~v~v~d~~~~~-~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
++.+..+.++.. ...++.-.++.+.++|-.... +. ..-..|. .+|..+-+++-+..+++....|.|.-|....
T Consensus 98 Pg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~-sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~ 175 (558)
T KOG0882|consen 98 PGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHF-SPVKKIRYNQAGDSAVSIDISGMVEYWSAEG 175 (558)
T ss_pred CCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceeccccc-CceEEEEeeccccceeeccccceeEeecCCC
Confidence 222222222221 222333457899999976433 22 2233453 4899999999999999999999999999875
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0063 Score=50.25 Aligned_cols=102 Identities=20% Similarity=0.181 Sum_probs=61.1
Q ss_pred ccEEEEEEeeCCCEEEEec------CCC--eEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCC-------
Q 028802 38 EELTSVVLMKNGRKVVCGS------QSG--TVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSEN------- 101 (203)
Q Consensus 38 ~~i~~l~~~~~~~~l~~~~------~d~--~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d------- 101 (203)
..+.+.+++|+|+.++... .+. .|.+++. .+.. ..+.. .. ..... |+|+|..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~--gg~~-~~lt~-g~-~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL--GGVA-VQVLE-GH-SLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC--CCcc-eeeec-CC-CCCCceECCCCCceEEEecCcceEEEe
Confidence 3577889999999887655 243 4444454 2333 33332 22 35555 89998877776432
Q ss_pred -----CcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEE
Q 028802 102 -----GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 102 -----g~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 149 (203)
+.+++.++..+.... .. ...|..+.|+|||..|+... ++.|++
T Consensus 425 ~~~~~gql~~~~vd~ge~~~---~~-~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS---RV-PGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred ccCCCceEEEEeccCchhhh---cc-CCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 223333433332222 11 22699999999999988765 467766
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.026 Score=45.81 Aligned_cols=147 Identities=16% Similarity=0.099 Sum_probs=87.8
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCccc-----EE-EEEEeeCCCEEEEec---------CCCeEEEEEcCCcccc
Q 028802 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEE-----LT-SVVLMKNGRKVVCGS---------QSGTVLLYSWGYFKDC 72 (203)
Q Consensus 8 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-----i~-~l~~~~~~~~l~~~~---------~d~~i~v~d~~~~~~~ 72 (203)
..++.++.++.|+.+|..+|+.+......... +. ...+. +..++.++ .++.+..+|..+....
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 67788888999999999999998877543221 11 11222 23454443 3577888888754333
Q ss_pred ceeeecCCC-------------------CceeE-E-EeeCCCEEEEEcCCC------------------cEEEEEccCCc
Q 028802 73 SDRFVGLSP-------------------NSVDA-L-LKLDEDRVITGSENG------------------LISLVGILPNR 113 (203)
Q Consensus 73 ~~~~~~~~~-------------------~~v~~-~-~~~~~~~l~~~~~dg------------------~v~v~d~~~~~ 113 (203)
.+ +..... ..++. . +.+.+..++.++.++ .|.-+|+.+|+
T Consensus 189 W~-~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 189 WR-FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eE-eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 32 221000 11111 1 344567778877665 68899999999
Q ss_pred eeeeeccCCCcceE------EEEEe----CCCC---eEEEEeCCCcEEEEeCCCcccC
Q 028802 114 IIQPIAEHSEYPIE------SLALS----HDRK---FLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 114 ~~~~~~~~~~~~i~------~~~~~----~~~~---~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.+..+..... ... ...+. -++. .++.++.+|.+..+|.++++..
T Consensus 268 ~~W~~~~~~~-~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~ 324 (488)
T cd00216 268 VKWFYQTTPH-DLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLI 324 (488)
T ss_pred EEEEeeCCCC-CCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEe
Confidence 9877643211 110 11111 1333 5677788999999999998754
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.029 Score=44.78 Aligned_cols=137 Identities=15% Similarity=0.132 Sum_probs=72.3
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCc--------c--ccceee
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF--------K--DCSDRF 76 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~--------~--~~~~~~ 76 (203)
|..|+..+. +.|.+||+.+++.+..+... +|..+.|++++.+++..+.+ .+.+++.... + .....+
T Consensus 117 G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~ 192 (443)
T PF04053_consen 117 GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELI 192 (443)
T ss_dssp SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEE
T ss_pred CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEE
Confidence 555655544 48999999999999998753 48999999999999988755 5777766421 0 012222
Q ss_pred ecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
.. ....|.+. |.-+ .++..+.. .|+. +-.|..- ++..- +.+++-+.+.|..+.+.....++.+..+.+...
T Consensus 193 ~E-~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~-~i~~l-d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 193 HE-ISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETG-IIAHL-DKPLYLLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp EE-E-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEE-EEEE--SS--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred EE-ecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcc-eEEEc-CCceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 21 13345444 5433 44444444 4543 3334322 22221 226777788887788888888888888876543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.019 Score=42.43 Aligned_cols=154 Identities=16% Similarity=0.128 Sum_probs=88.3
Q ss_pred cccccCCEEEEEcC-----CCeEEEEEcCCC-eEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEE------------
Q 028802 2 TFAADAMKLLGTSG-----DGTLSVCNLRKN-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLL------------ 63 (203)
Q Consensus 2 ~~sp~~~~l~~~~~-----d~~i~v~d~~~~-~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v------------ 63 (203)
.|||||.+|+..-. -|.|-|||.+.+ +.+..+..|.-....+.|.+||+.++.+.. -|..
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~lNld 197 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTELNLD 197 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCC--ceecccccCccccchh
Confidence 48999999887643 378999999854 456777788878889999999999987643 2322
Q ss_pred --------EEcCCccccceeeec---CCCCceeEE-EeeCCCEEEEEcCCCc-----EEEEEccCCceeeeeccCCC---
Q 028802 64 --------YSWGYFKDCSDRFVG---LSPNSVDAL-LKLDEDRVITGSENGL-----ISLVGILPNRIIQPIAEHSE--- 123 (203)
Q Consensus 64 --------~d~~~~~~~~~~~~~---~~~~~v~~~-~~~~~~~l~~~~~dg~-----v~v~d~~~~~~~~~~~~~~~--- 123 (203)
.|..+ +..+++..- .+...++.+ ..++|..++-+-..|. -.|=-...++++.-+....+
T Consensus 198 sMePSlvlld~at-G~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~ 276 (366)
T COG3490 198 SMEPSLVLLDAAT-GNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTA 276 (366)
T ss_pred hcCccEEEEeccc-cchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHH
Confidence 22111 122211110 022345555 4556655544433221 11111223444433332211
Q ss_pred ---cceEEEEEeCCCCeEEEEe-CCCcEEEEeCCCcccC
Q 028802 124 ---YPIESLALSHDRKFLGSIS-HDSMLKLWDLDDILKG 158 (203)
Q Consensus 124 ---~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~ 158 (203)
.-|-+|+.+.+..+++..+ ..+...+||..++...
T Consensus 277 ~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv 315 (366)
T COG3490 277 AFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVV 315 (366)
T ss_pred HHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEE
Confidence 1366777776655655444 6667899999998754
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.02 Score=46.44 Aligned_cols=149 Identities=13% Similarity=0.045 Sum_probs=88.7
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcc------cEE--EEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE------ELT--SVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~------~i~--~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
+..++.++.++.|+-+|..+++.+........ .+. .+... ++..++.++.++.|+.+|..+. +.+-.+..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG-~~~W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETG-KQVWKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCC-CEeeeecC
Confidence 45677777889999999999988876653222 110 11111 2267888888999999999764 44333332
Q ss_pred CCCC--ceeEE-Eee--CCCEEEEEc---------CCCcEEEEEccCCceeeeeccCCC-------------------cc
Q 028802 79 LSPN--SVDAL-LKL--DEDRVITGS---------ENGLISLVGILPNRIIQPIAEHSE-------------------YP 125 (203)
Q Consensus 79 ~~~~--~v~~~-~~~--~~~~l~~~~---------~dg~v~v~d~~~~~~~~~~~~~~~-------------------~~ 125 (203)
... .-..+ .+| .+..++.++ .++.|..+|..+|+.+..+..... ..
T Consensus 139 -~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 139 -NDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred -CCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 111 00011 111 124455553 367889999999998877644211 01
Q ss_pred e-EEEEEeCCCCeEEEEeCCC------------------cEEEEeCCCcccC
Q 028802 126 I-ESLALSHDRKFLGSISHDS------------------MLKLWDLDDILKG 158 (203)
Q Consensus 126 i-~~~~~~~~~~~l~~~~~d~------------------~i~iwd~~~~~~~ 158 (203)
+ ...++.+.+..++.++.++ .|.-+|+.+++..
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~ 269 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK 269 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence 1 1245555566777776554 6888898888754
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.035 Score=43.62 Aligned_cols=151 Identities=14% Similarity=0.126 Sum_probs=86.0
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEee--cC------CcccEEEEEEee-----CC---CEEEEecCCCeEEEEEcCC-
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRS--EF------SEEELTSVVLMK-----NG---RKVVCGSQSGTVLLYSWGY- 68 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~--~~------~~~~i~~l~~~~-----~~---~~l~~~~~d~~i~v~d~~~- 68 (203)
|-.++|+|..+|.+.|.|++.+..+..- .. ....++++.|.. |+ -.|++|+..|.+.+|.+..
T Consensus 96 ~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~ 175 (395)
T PF08596_consen 96 DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPS 175 (395)
T ss_dssp BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-
T ss_pred CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecC
Confidence 5568999999999999999988776542 11 234677888873 22 3678889999999998742
Q ss_pred c-ccc----ceeeecCCCCceeEE--EeeC-C-------------------CEEEEEcCCCcEEEEEccCCceeeeeccC
Q 028802 69 F-KDC----SDRFVGLSPNSVDAL--LKLD-E-------------------DRVITGSENGLISLVGILPNRIIQPIAEH 121 (203)
Q Consensus 69 ~-~~~----~~~~~~~~~~~v~~~--~~~~-~-------------------~~l~~~~~dg~v~v~d~~~~~~~~~~~~~ 121 (203)
. +.. ...... +...+..+ ++.+ | +.++..+.+..++++.+.+.+........
T Consensus 176 ~~g~f~v~~~~~~~~-~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~ 254 (395)
T PF08596_consen 176 SNGRFSVQFAGATTN-HDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDD 254 (395)
T ss_dssp GGG-EEEEEEEEE---SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS
T ss_pred CCCceEEEEeecccc-CCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeecc
Confidence 1 111 111112 34555544 3222 1 23455555677999998877665444322
Q ss_pred CCcceEEEEEe-----CCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 122 SEYPIESLALS-----HDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 122 ~~~~i~~~~~~-----~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
...+..+.+- ..+..|++...+|.|++|.+...++.
T Consensus 255 -~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei 295 (395)
T PF08596_consen 255 -PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEI 295 (395)
T ss_dssp --EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EE
T ss_pred -ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHh
Confidence 1133444453 35567888889999999999887654
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.027 Score=43.04 Aligned_cols=141 Identities=18% Similarity=0.168 Sum_probs=79.3
Q ss_pred CCEEEEEcCCCeEEEEEcCCCe-EEEeec-CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-CCCCc
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNT-VQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-LSPNS 83 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~-~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~ 83 (203)
+.+|+++.. +.|.+|++...+ ....-. .....+.++.. .++++++|.....+.++.+......+..+.. .....
T Consensus 98 ~~~lv~~~g-~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~ 174 (321)
T PF03178_consen 98 NGRLVVAVG-NKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRW 174 (321)
T ss_dssp TTEEEEEET-TEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BE
T ss_pred CCEEEEeec-CEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCcc
Confidence 334555443 789999998776 433222 12335555554 4669999998888888866432232333322 02344
Q ss_pred eeEE-EeeCCCEEEEEcCCCcEEEEEccC-------Cc--eeeeeccCCCcceEEE---EEeC--CCC------eEEEEe
Q 028802 84 VDAL-LKLDEDRVITGSENGLISLVGILP-------NR--IIQPIAEHSEYPIESL---ALSH--DRK------FLGSIS 142 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~dg~v~v~d~~~-------~~--~~~~~~~~~~~~i~~~---~~~~--~~~------~l~~~~ 142 (203)
+.++ +-+++..++.+..+|.|.++.... +. ......-|.+..|+++ .+.| .+. .++.++
T Consensus 175 v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T 254 (321)
T PF03178_consen 175 VTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGT 254 (321)
T ss_dssp EEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEE
T ss_pred EEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEe
Confidence 5666 554667999999999999988752 22 2222222333367777 5555 222 377888
Q ss_pred CCCcEEEE
Q 028802 143 HDSMLKLW 150 (203)
Q Consensus 143 ~d~~i~iw 150 (203)
.+|.|.+.
T Consensus 255 ~~G~Ig~l 262 (321)
T PF03178_consen 255 VDGSIGVL 262 (321)
T ss_dssp TTS-EEEE
T ss_pred cCCEEEEE
Confidence 89998844
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.024 Score=43.95 Aligned_cols=137 Identities=10% Similarity=0.035 Sum_probs=72.1
Q ss_pred cccccCCEEEEEcC---CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028802 2 TFAADAMKLLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
+|.++|+.|+.++. ...+++.|+.+++..+.-.+.........++|+.+.++.......|...|+.+. +....+..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~-e~~~vy~~ 120 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTL-EERVVYEV 120 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT---EEEEEE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcC-cEEEEEEC
Confidence 47889977665544 457888899998776555443333335667788888876655678888888753 32222332
Q ss_pred CCCCceeEE-E--eeCCCEEEEEc----------------------CCCcEEEEEccCCceeeeeccCCCcceEEEEEeC
Q 028802 79 LSPNSVDAL-L--KLDEDRVITGS----------------------ENGLISLVGILPNRIIQPIAEHSEYPIESLALSH 133 (203)
Q Consensus 79 ~~~~~v~~~-~--~~~~~~l~~~~----------------------~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~ 133 (203)
....+... | +.++..++-.- -...|...|+.+|+....+... . .+..+.|+|
T Consensus 121 -p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~-~-wlgH~~fsP 197 (386)
T PF14583_consen 121 -PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT-D-WLGHVQFSP 197 (386)
T ss_dssp --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES-S--EEEEEEET
T ss_pred -CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC-c-cccCcccCC
Confidence 33333222 3 44555544221 1234666788888776666554 3 788999999
Q ss_pred CCCeEEEEe
Q 028802 134 DRKFLGSIS 142 (203)
Q Consensus 134 ~~~~l~~~~ 142 (203)
....+++-|
T Consensus 198 ~dp~li~fC 206 (386)
T PF14583_consen 198 TDPTLIMFC 206 (386)
T ss_dssp TEEEEEEEE
T ss_pred CCCCEEEEe
Confidence 776655544
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.29 E-value=6.9e-05 Score=60.16 Aligned_cols=140 Identities=12% Similarity=0.211 Sum_probs=91.5
Q ss_pred CEEEEEcCCCeEEEEEcCCCeE--EEeecCCcccEEEEEEee-CCCEEEEecC----CCeEEEEEcCCcc-ccce--eee
Q 028802 8 MKLLGTSGDGTLSVCNLRKNTV--QTRSEFSEEELTSVVLMK-NGRKVVCGSQ----SGTVLLYSWGYFK-DCSD--RFV 77 (203)
Q Consensus 8 ~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~i~~l~~~~-~~~~l~~~~~----d~~i~v~d~~~~~-~~~~--~~~ 77 (203)
-.+++|..+|.|.+-.++...- .....++..+.++++|++ |.+.|+.|-. +..+.+||+...- .+.. .|.
T Consensus 71 cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs 150 (783)
T KOG1008|consen 71 CILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFS 150 (783)
T ss_pred hhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccc
Confidence 3567888889999988875422 234456778899999998 5667776643 5679999996421 1111 111
Q ss_pred cCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc-eeeeeccCCCcceEEEEEeC-CCCeEEEEeCCCcEEEEe
Q 028802 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd 151 (203)
+.......++ |-.+.+++++|...+.+.++|++... ....+.. . .+..+...| .+.|+++.. |+.|.+||
T Consensus 151 ~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT--k-~vqG~tVdp~~~nY~cs~~-dg~iAiwD 223 (783)
T KOG1008|consen 151 SSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT--K-YVQGITVDPFSPNYFCSNS-DGDIAIWD 223 (783)
T ss_pred cccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh--h-hcccceecCCCCCceeccc-cCceeecc
Confidence 1011223344 56778888899999999999998322 1222221 2 356677788 677877665 99999999
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.04 Score=40.43 Aligned_cols=147 Identities=10% Similarity=0.077 Sum_probs=78.5
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCC------eEEEeec-----CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCC--
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKN------TVQTRSE-----FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-- 68 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~------~~~~~~~-----~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~-- 68 (203)
++..++.++++.-+++.+.++.+... .....+. .+...+-.++|.|.++.|+++-...-..+|.+..
T Consensus 71 ~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~ 150 (248)
T PF06977_consen 71 TYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP 150 (248)
T ss_dssp EE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT
T ss_pred EEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc
Confidence 34455666666666889999988321 1112221 2345689999999888888877766667776653
Q ss_pred ccccceee-----e--cCCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCCceeeeeccCCC--------cceEEEEE
Q 028802 69 FKDCSDRF-----V--GLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQPIAEHSE--------YPIESLAL 131 (203)
Q Consensus 69 ~~~~~~~~-----~--~~~~~~v~~~-~~~~-~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~--------~~i~~~~~ 131 (203)
....+... . ......+..+ ++|. +++++.+.....|..+| ..|+++..+....+ .....|+|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~ 229 (248)
T PF06977_consen 151 GGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAF 229 (248)
T ss_dssp -SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE
T ss_pred CccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEE
Confidence 11111111 0 0023346677 7774 56677777888899999 66777665543321 25788999
Q ss_pred eCCCCeEEEEeCCCcEEEE
Q 028802 132 SHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 132 ~~~~~~l~~~~~d~~i~iw 150 (203)
.++|+..+++ .-+..++|
T Consensus 230 d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 230 DPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp -TT--EEEEE-TTTEEEEE
T ss_pred CCCCCEEEEc-CCceEEEe
Confidence 9999655544 45555554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.024 Score=46.84 Aligned_cols=112 Identities=13% Similarity=0.082 Sum_probs=71.5
Q ss_pred cccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccc-eeeecCCCCceeEE-E--eeCCCEEEEEcCCCcEEEEEcc--
Q 028802 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS-DRFVGLSPNSVDAL-L--KLDEDRVITGSENGLISLVGIL-- 110 (203)
Q Consensus 37 ~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~v~~~-~--~~~~~~l~~~~~dg~v~v~d~~-- 110 (203)
...+.-+.-+.-++..++-+....+.|||.+...... ..+ . ....|..+ | .|++..+++.+-.+.|.+|.-.
T Consensus 29 i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~-~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~ 106 (631)
T PF12234_consen 29 ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-S-EDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRY 106 (631)
T ss_pred CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-c-CCCceeeceeeecCCCCEEEEEEcCcEEEEEEccch
Confidence 3344444445545555555556789999997432111 122 3 46788888 6 7899999999999999988632
Q ss_pred ----C---Cceeee--eccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028802 111 ----P---NRIIQP--IAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 111 ----~---~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
. ..++.. +..++..+|.+..|.++|..++.++ ..+.|++-
T Consensus 107 dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 107 DYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred hhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 1 112222 2344434799999999997766553 56777763
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0025 Score=54.47 Aligned_cols=102 Identities=17% Similarity=0.218 Sum_probs=72.3
Q ss_pred CCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCC--c
Q 028802 48 NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE--Y 124 (203)
Q Consensus 48 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~--~ 124 (203)
.+..++.|+..|.+...|+...-.+...-.. ..++|+++ |+.+|..++.|-.+|.|.+||+..++++..+..+.. .
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~-v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNER-VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCc-cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 3456788888899988888632111122222 46789999 899999999999999999999999998888876632 1
Q ss_pred ceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028802 125 PIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 125 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
.+..+.+..++..++++...|. +|.+
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 3344455556667777777675 5543
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.047 Score=40.05 Aligned_cols=151 Identities=12% Similarity=0.120 Sum_probs=87.7
Q ss_pred CcccccCC-EEEEEcCCCeEEEEEcCCCeEEEeecCC-cccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccc-----
Q 028802 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS----- 73 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~----- 73 (203)
|+|+|+.+ ++++....+.|..++. +|+.+..+... ..-.-.|++..++.++++.-.++.+.++++......+
T Consensus 27 LTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~ 105 (248)
T PF06977_consen 27 LTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADV 105 (248)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEE
T ss_pred cEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhc
Confidence 57899866 5566777888988886 46777766533 3457788888888777777678999999884322211
Q ss_pred eeee--c--CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC---Cceeee-----ec---cCCCcceEEEEEeCCCC-
Q 028802 74 DRFV--G--LSPNSVDAL-LKLDEDRVITGSENGLISLVGILP---NRIIQP-----IA---EHSEYPIESLALSHDRK- 136 (203)
Q Consensus 74 ~~~~--~--~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~---~~~~~~-----~~---~~~~~~i~~~~~~~~~~- 136 (203)
..+. . .+...+-.+ |+|.++.++++.......+|.+.. ...+.. +. .. ...+.+++++|...
T Consensus 106 ~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~S~l~~~p~t~~ 184 (248)
T PF06977_consen 106 QKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF-VRDLSGLSYDPRTGH 184 (248)
T ss_dssp EEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT---SS---EEEEETTTTE
T ss_pred eEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccce-eccccceEEcCCCCe
Confidence 1111 1 023346777 899888888888877777777653 211111 11 11 12578899999654
Q ss_pred eEEEEeCCCcEEEEeCC
Q 028802 137 FLGSISHDSMLKLWDLD 153 (203)
Q Consensus 137 ~l~~~~~d~~i~iwd~~ 153 (203)
+++....++.|..+|..
T Consensus 185 lliLS~es~~l~~~d~~ 201 (248)
T PF06977_consen 185 LLILSDESRLLLELDRQ 201 (248)
T ss_dssp EEEEETTTTEEEEE-TT
T ss_pred EEEEECCCCeEEEECCC
Confidence 44555577778887743
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.053 Score=40.27 Aligned_cols=154 Identities=10% Similarity=0.126 Sum_probs=98.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCC-cccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce-----
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD----- 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~----- 74 (203)
++|+|+.+.|++......-.|+-...|+.+.++.-. -.-...|.+..+++++++--.++.+.++.+......+.
T Consensus 91 LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~ 170 (316)
T COG3204 91 LTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQK 170 (316)
T ss_pred eeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceE
Confidence 579999999988888777777777788888877531 12244577887888888877788888887754322111
Q ss_pred ----eeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc-ee--eeeccCCC------cceEEEEEeCCC-CeEE
Q 028802 75 ----RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR-II--QPIAEHSE------YPIESLALSHDR-KFLG 139 (203)
Q Consensus 75 ----~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~-~~--~~~~~~~~------~~i~~~~~~~~~-~~l~ 139 (203)
.... .....-.+ |.|....++.+-+..-+.||....+. .+ .....+.. ..|.++.|++.. ..|+
T Consensus 171 i~L~~~~k-~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLV 249 (316)
T COG3204 171 IPLGTTNK-KNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLV 249 (316)
T ss_pred EeccccCC-CCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEE
Confidence 1111 13345566 89999999998888888877765322 11 11111110 147778888754 4555
Q ss_pred EEeCCCcEEEEeCCCc
Q 028802 140 SISHDSMLKLWDLDDI 155 (203)
Q Consensus 140 ~~~~d~~i~iwd~~~~ 155 (203)
-+..++.+.-.|....
T Consensus 250 LS~ESr~l~Evd~~G~ 265 (316)
T COG3204 250 LSDESRRLLEVDLSGE 265 (316)
T ss_pred EecCCceEEEEecCCC
Confidence 5557777777776554
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0018 Score=55.23 Aligned_cols=94 Identities=14% Similarity=0.232 Sum_probs=68.1
Q ss_pred CEEEEEcCCCeEEEEEcCCC-eEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeE
Q 028802 8 MKLLGTSGDGTLSVCNLRKN-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 8 ~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~ 86 (203)
..+++|+..|.+-..|..++ .....-....++|++++|+.+|..+..|-.+|.|.+||+.. +..++.+.. +..+...
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~k~l~~i~e-~~ap~t~ 177 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-AKILKVITE-HGAPVTG 177 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccC-Ccceeeeee-cCCccce
Confidence 35677777888887776653 11112223467899999999999999999999999999975 467777766 6666555
Q ss_pred E----EeeCCCEEEEEcCCCc
Q 028802 87 L----LKLDEDRVITGSENGL 103 (203)
Q Consensus 87 ~----~~~~~~~l~~~~~dg~ 103 (203)
+ +..++..++++...|.
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc
Confidence 5 3556667788877776
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.021 Score=46.26 Aligned_cols=113 Identities=10% Similarity=0.044 Sum_probs=67.9
Q ss_pred ccEEEEEEeeC----CCEEEEecCCCeEEEEEcCCccc----cceeeec--CCC---CceeEEEeeCCCEEEEEcCCCcE
Q 028802 38 EELTSVVLMKN----GRKVVCGSQSGTVLLYSWGYFKD----CSDRFVG--LSP---NSVDALLKLDEDRVITGSENGLI 104 (203)
Q Consensus 38 ~~i~~l~~~~~----~~~l~~~~~d~~i~v~d~~~~~~----~~~~~~~--~~~---~~v~~~~~~~~~~l~~~~~dg~v 104 (203)
..|..+.|.|- ...|+.......|.||.+..... .+..-.. ... -+-.|+|+|....+++-.....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 45889999984 32444445667899999853211 1111010 001 12345599998888876665444
Q ss_pred EEEEccCC--ceeeeeccCCCcceEEEEEeCCCCeEEEEe-CCCcEEEEeC
Q 028802 105 SLVGILPN--RIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDL 152 (203)
Q Consensus 105 ~v~d~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~ 152 (203)
.+++++.. +...-+..+ + -|+|.+|.+||+.|+++- ..=+-+|||-
T Consensus 137 V~~sV~~d~srVkaDi~~~-G-~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIKTS-G-LIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred EeeeeeeCCceEEEeccCC-c-eEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 45666543 333444444 3 799999999998876554 3345688873
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.067 Score=40.80 Aligned_cols=150 Identities=12% Similarity=0.055 Sum_probs=90.1
Q ss_pred cccccCCEEEEEc----------CCCeEEEEEcCCCeEEEeecCCcc-c------EEEEEEeeCCCEEEEecC--CCeEE
Q 028802 2 TFAADAMKLLGTS----------GDGTLSVCNLRKNTVQTRSEFSEE-E------LTSVVLMKNGRKVVCGSQ--SGTVL 62 (203)
Q Consensus 2 ~~sp~~~~l~~~~----------~d~~i~v~d~~~~~~~~~~~~~~~-~------i~~l~~~~~~~~l~~~~~--d~~i~ 62 (203)
..||+++.++++. +.-.|.+||..+-.+...+.-+.. + ...++++.+++++++... ...|.
T Consensus 42 ~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVt 121 (342)
T PF06433_consen 42 ALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVT 121 (342)
T ss_dssp EE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEE
T ss_pred eECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEE
Confidence 5789999888753 234689999999877665543322 1 123567778887776443 45788
Q ss_pred EEEcCCccccceeeecCCCCceeEEE-eeCCCEEEEEcCCCcEEEEEcc-CCceeeee----ccCCCcceEEEEEeCCCC
Q 028802 63 LYSWGYFKDCSDRFVGLSPNSVDALL-KLDEDRVITGSENGLISLVGIL-PNRIIQPI----AEHSEYPIESLALSHDRK 136 (203)
Q Consensus 63 v~d~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~v~v~d~~-~~~~~~~~----~~~~~~~i~~~~~~~~~~ 136 (203)
|.|+.. ++.+..+.. + .+..++ ++ ...+.+.|.||.+..+.+. .|+..... ....+..+..-++...+.
T Consensus 122 VVDl~~-~kvv~ei~~--P-GC~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~ 196 (342)
T PF06433_consen 122 VVDLAA-KKVVGEIDT--P-GCWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGG 196 (342)
T ss_dssp EEETTT-TEEEEEEEG--T-SEEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTT
T ss_pred EEECCC-CceeeeecC--C-CEEEEEecC-CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCC
Confidence 888864 455555543 2 223333 22 2468888999999988887 45544221 111121223445566666
Q ss_pred eEEEEeCCCcEEEEeCCCcc
Q 028802 137 FLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 137 ~l~~~~~d~~i~iwd~~~~~ 156 (203)
.++..+.+|.|+--|+....
T Consensus 197 ~~~F~Sy~G~v~~~dlsg~~ 216 (342)
T PF06433_consen 197 RLYFVSYEGNVYSADLSGDS 216 (342)
T ss_dssp EEEEEBTTSEEEEEEETTSS
T ss_pred eEEEEecCCEEEEEeccCCc
Confidence 77778889999888876654
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.064 Score=41.87 Aligned_cols=138 Identities=9% Similarity=0.010 Sum_probs=72.5
Q ss_pred CcccccCCEEEEEc-----------CCC-eEEEEEcCC--CeE--EEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEE
Q 028802 1 MTFAADAMKLLGTS-----------GDG-TLSVCNLRK--NTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLY 64 (203)
Q Consensus 1 l~~sp~~~~l~~~~-----------~d~-~i~v~d~~~--~~~--~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~ 64 (203)
|+|.++|+++++-. ..+ .|.+++-.. +.. ...+.........+++.+++ |+++.....+++.
T Consensus 19 ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i~~~~ 96 (367)
T TIGR02604 19 VCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDILFLR 96 (367)
T ss_pred eeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeEEEEe
Confidence 57889998777643 223 676665432 221 22333333456789998888 4444444333343
Q ss_pred EcCCcc----c---cceeeecCC----CCceeEE-EeeCCCEEEEEcC-------------------CCcEEEEEccCCc
Q 028802 65 SWGYFK----D---CSDRFVGLS----PNSVDAL-LKLDEDRVITGSE-------------------NGLISLVGILPNR 113 (203)
Q Consensus 65 d~~~~~----~---~~~~~~~~~----~~~v~~~-~~~~~~~l~~~~~-------------------dg~v~v~d~~~~~ 113 (203)
|....+ . .+..+.. . ......+ +.|+|.+.++.+. .|.|..++...++
T Consensus 97 d~~gdg~ad~~~~~l~~~~~~-~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~ 175 (367)
T TIGR02604 97 DKDGDDKADGEREVLLSGFGG-QINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGK 175 (367)
T ss_pred CCCCCCCCCCccEEEEEccCC-CCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCe
Confidence 543211 1 1111211 1 1224456 7899877664441 1345556655443
Q ss_pred eeeeeccCCCcceEEEEEeCCCCeEEEEeC
Q 028802 114 IIQPIAEHSEYPIESLALSHDRKFLGSISH 143 (203)
Q Consensus 114 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 143 (203)
. ..+..... ....++|+|+|+.+++-..
T Consensus 176 ~-e~~a~G~r-np~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 176 L-RVVAHGFQ-NPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred E-EEEecCcC-CCccceECCCCCEEEEccC
Confidence 3 23322212 4678999999988776543
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.053 Score=40.19 Aligned_cols=142 Identities=13% Similarity=0.093 Sum_probs=84.9
Q ss_pred CcccccCC-EEEEEcCCCe-EEEEEcCCCeEEEeecCCccc--EEEEEEeeCCCEEEEecCC-----CeEEEEEcCCccc
Q 028802 1 MTFAADAM-KLLGTSGDGT-LSVCNLRKNTVQTRSEFSEEE--LTSVVLMKNGRKVVCGSQS-----GTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~-i~v~d~~~~~~~~~~~~~~~~--i~~l~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~ 71 (203)
|+|+|-.. -++.+-+-|+ ..++|..+.+...++...+.+ .-.=.|+|||.+|+..-.| |.|=|||.+..-.
T Consensus 73 i~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fq 152 (366)
T COG3490 73 IAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQ 152 (366)
T ss_pred eecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccc
Confidence 35566443 3455544444 457777765544444322211 1123589999998875443 7899999985444
Q ss_pred cceeeecCCCCceeEE-EeeCCCEEEEEcC------------------CCcEEEEEccCCceeeeeccCC---CcceEEE
Q 028802 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSE------------------NGLISLVGILPNRIIQPIAEHS---EYPIESL 129 (203)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~------------------dg~v~v~d~~~~~~~~~~~~~~---~~~i~~~ 129 (203)
.+..+.. |.-....+ +.+||+.++.+.. .-.+.+.|..+|..+.+..... ...|..+
T Consensus 153 rvgE~~t-~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHl 231 (366)
T COG3490 153 RVGEFST-HGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHL 231 (366)
T ss_pred eeccccc-CCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeee
Confidence 5556666 65555666 8999999987753 1134455555666554433221 1268888
Q ss_pred EEeCCCCeEEEEeC
Q 028802 130 ALSHDRKFLGSISH 143 (203)
Q Consensus 130 ~~~~~~~~l~~~~~ 143 (203)
...+||+.++.+-.
T Consensus 232 d~g~dgtvwfgcQy 245 (366)
T COG3490 232 DIGRDGTVWFGCQY 245 (366)
T ss_pred eeCCCCcEEEEEEe
Confidence 88888877665543
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.046 Score=41.66 Aligned_cols=131 Identities=11% Similarity=0.101 Sum_probs=83.4
Q ss_pred CeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC----------CCeEEEEEcCCccccceeeecCC--CC--
Q 028802 17 GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ----------SGTVLLYSWGYFKDCSDRFVGLS--PN-- 82 (203)
Q Consensus 17 ~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~----------d~~i~v~d~~~~~~~~~~~~~~~--~~-- 82 (203)
+.++|+|..+++.+..+... ..-.+..+|+++.+++++. .-.|.+||..+.. +...+.--. ..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~-~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLS-PTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTE-EEEEEEETTS-B--B
T ss_pred ceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCc-ccceEecCCcchhee
Confidence 57999999999988877642 2334678999998886432 3468999987532 222111101 11
Q ss_pred --ceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 83 --SVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 83 --~v~~~-~~~~~~~l~~~~~--dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
....+ ++.+++++++... .-.|.|.|+..++.+..+... + +..+--+++ +-+.+.|.||.+....+..
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-G--C~~iyP~~~-~~F~~lC~DGsl~~v~Ld~ 166 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-G--CWLIYPSGN-RGFSMLCGDGSLLTVTLDA 166 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-S--EEEEEEEET-TEEEEEETTSCEEEEEETS
T ss_pred cccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-C--EEEEEecCC-CceEEEecCCceEEEEECC
Confidence 11222 5788888887654 456889999988888877665 3 333322223 4577888899998888863
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.08 Score=40.01 Aligned_cols=143 Identities=13% Similarity=0.078 Sum_probs=71.2
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcccccee----eec
Q 028802 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR----FVG 78 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~----~~~ 78 (203)
-+++|++++++..-..+.-|+.-...-...-.....+|..|.|.|++.+.+.+ ..|.|++=+.......... +..
T Consensus 152 r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~ 230 (302)
T PF14870_consen 152 RSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKT 230 (302)
T ss_dssp E-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS
T ss_pred ECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCccc
Confidence 46889988888776666677754322222223345789999999998776654 7888888762211222111 111
Q ss_pred CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC--CcceEEEEEeCCCCeEEEEeCCCcEEEE
Q 028802 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS--EYPIESLALSHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~iw 150 (203)
....+..+ |.+++...++|+ .|.+ ++....|+.-+..+.-. ...++.|.|.+..+-+ ..+.+|.|.-|
T Consensus 231 -~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf-~lG~~G~ll~~ 301 (302)
T PF14870_consen 231 -NGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGF-VLGQDGVLLRY 301 (302)
T ss_dssp ---S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEE-EE-STTEEEEE
T ss_pred -CceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceE-EECCCcEEEEe
Confidence 22335666 777766666554 4544 34445565544443311 1257888887664444 44568887655
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0042 Score=44.11 Aligned_cols=101 Identities=15% Similarity=0.133 Sum_probs=53.3
Q ss_pred CCEEEEEcCCCeEEEEEcCCC-eEEEeecCCcccEEE-EEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCC-Cc
Q 028802 7 AMKLLGTSGDGTLSVCNLRKN-TVQTRSEFSEEELTS-VVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP-NS 83 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~i~~-l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-~~ 83 (203)
+..+++|+.+|.|++|+.... ............|.+ +.-..++.+..+++.+|.|+.|.+.. .+.+...-. |. .+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p-~k~~g~~g~-h~~~~ 147 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP-NKVLGYVGQ-HNFES 147 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeecccc-Cceeeeecc-ccCCC
Confidence 356888899999999987632 111111111222222 22233556788899999999999863 333333333 33 22
Q ss_pred eeEE-EeeCCCEEEEE--cCCCcEEEEEc
Q 028802 84 VDAL-LKLDEDRVITG--SENGLISLVGI 109 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~--~~dg~v~v~d~ 109 (203)
...+ ....+..+.++ +.+..++.|++
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcch
Confidence 2222 33344444444 44444444544
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.042 Score=43.93 Aligned_cols=145 Identities=12% Similarity=0.098 Sum_probs=90.4
Q ss_pred ccCCEEE-EEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCC--------CEEEEecCCCeEEEEEcCCcccccee
Q 028802 5 ADAMKLL-GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG--------RKVVCGSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 5 p~~~~l~-~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~--------~~l~~~~~d~~i~v~d~~~~~~~~~~ 75 (203)
.+..+|+ .|..-..++-.|+..|+.+.....+..- -+.+.|.. +.|+-.+ +..|.-.|.+..+..+..
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeec-ccceEEecccccCCceee
Confidence 3444443 3455567888888888888777766554 46666642 3344334 444555566544433322
Q ss_pred eec--C-CCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028802 76 FVG--L-SPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 76 ~~~--~-~~~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
... + ......+.......+|+.++..|.|++||.-.-+....+++... +|..+..+.+|.++++.|. ..|.+-|+
T Consensus 554 ~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~-aIk~idvta~Gk~ilaTCk-~yllL~d~ 631 (776)
T COG5167 554 VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGD-AIKHIDVTANGKHILATCK-NYLLLTDV 631 (776)
T ss_pred eeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCccccc-ceeeeEeecCCcEEEEeec-ceEEEEec
Confidence 221 0 12334444455667999999999999999543334444555534 8999999999999877664 57777776
Q ss_pred CC
Q 028802 153 DD 154 (203)
Q Consensus 153 ~~ 154 (203)
+-
T Consensus 632 ~i 633 (776)
T COG5167 632 PI 633 (776)
T ss_pred cc
Confidence 53
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.054 Score=42.64 Aligned_cols=114 Identities=20% Similarity=0.226 Sum_probs=71.4
Q ss_pred cEEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc------------------------------------------ceee
Q 028802 39 ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC------------------------------------------SDRF 76 (203)
Q Consensus 39 ~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~------------------------------------------~~~~ 76 (203)
.|..+.|.+...-|+++...|.|.+|.+...... ...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 4677888888888888888888888766421100 0001
Q ss_pred ecCCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeee--cc-----CCCcceEEEEEeC-----CC---CeEEEE
Q 028802 77 VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPI--AE-----HSEYPIESLALSH-----DR---KFLGSI 141 (203)
Q Consensus 77 ~~~~~~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~--~~-----~~~~~i~~~~~~~-----~~---~~l~~~ 141 (203)
.. ..++|+++-..+=.+++.|..+|.+.|.|++....+..- .. .....++++.|.. |+ -.+++|
T Consensus 83 ~~-~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DA-KQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ----S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred ec-cCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 12 345677775556678999999999999999866655442 22 1122577787763 33 357788
Q ss_pred eCCCcEEEEeCC
Q 028802 142 SHDSMLKLWDLD 153 (203)
Q Consensus 142 ~~d~~i~iwd~~ 153 (203)
...|.+.+|.+-
T Consensus 162 Tn~G~v~~fkIl 173 (395)
T PF08596_consen 162 TNSGNVLTFKIL 173 (395)
T ss_dssp ETTSEEEEEEEE
T ss_pred eCCCCEEEEEEe
Confidence 889999999884
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.11 Score=38.43 Aligned_cols=138 Identities=16% Similarity=0.074 Sum_probs=80.2
Q ss_pred cccccCCEEEEEc---CCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEE-cCCccccceeee
Q 028802 2 TFAADAMKLLGTS---GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS-WGYFKDCSDRFV 77 (203)
Q Consensus 2 ~~sp~~~~l~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d-~~~~~~~~~~~~ 77 (203)
++|++++.++... ....|+++..... ....+. ...+....|++++...+....+....++. ..........+.
T Consensus 30 AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~ 106 (253)
T PF10647_consen 30 AVSPDGSRVAAVSEGDGGRSLYVGPAGGP-VRPVLT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVD 106 (253)
T ss_pred EECCCCCeEEEEEEcCCCCEEEEEcCCCc-ceeecc--CCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEec
Confidence 6789998876655 3345666554332 222222 23678889999987776666566666653 221111111222
Q ss_pred cCCC-CceeEE-EeeCCCEEEEEc---CCCcEEEEEcc---CC------ceeeeeccCCCcceEEEEEeCCCCeEEEEeC
Q 028802 78 GLSP-NSVDAL-LKLDEDRVITGS---ENGLISLVGIL---PN------RIIQPIAEHSEYPIESLALSHDRKFLGSISH 143 (203)
Q Consensus 78 ~~~~-~~v~~~-~~~~~~~l~~~~---~dg~v~v~d~~---~~------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 143 (203)
.... ..|..+ ++|+|..++... .++.|.+--+. .+ ..+...... ...+..+.|.+++.+++.+..
T Consensus 107 ~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~-~~~v~~v~W~~~~~L~V~~~~ 185 (253)
T PF10647_consen 107 WPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL-LSDVTDVAWSDDSTLVVLGRS 185 (253)
T ss_pred ccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc-cCcceeeeecCCCEEEEEeCC
Confidence 1011 278888 999999988776 24667766543 22 111222121 226899999999988776653
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.069 Score=41.41 Aligned_cols=140 Identities=14% Similarity=0.144 Sum_probs=75.8
Q ss_pred CcccccCCEEEEE--cCC---CeEEEEEcCCCeEEEeec-CCcc---cEEEEEEe-eCCC-EEEEecCCCeEEEEEcCCc
Q 028802 1 MTFAADAMKLLGT--SGD---GTLSVCNLRKNTVQTRSE-FSEE---ELTSVVLM-KNGR-KVVCGSQSGTVLLYSWGYF 69 (203)
Q Consensus 1 l~~sp~~~~l~~~--~~d---~~i~v~d~~~~~~~~~~~-~~~~---~i~~l~~~-~~~~-~l~~~~~d~~i~v~d~~~~ 69 (203)
+.|+++++.|+.. .++ ..+.++|..++.....+. .... ....+.+. +++. +|.....+|.-++|-+...
T Consensus 189 v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~ 268 (353)
T PF00930_consen 189 VGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLD 268 (353)
T ss_dssp EEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETT
T ss_pred ceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccc
Confidence 3588888844333 222 346677776654322221 1111 12244444 5554 4445556776666655444
Q ss_pred cccceeeecCCCCceeEE--EeeCCCEEEEE-cC----CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe
Q 028802 70 KDCSDRFVGLSPNSVDAL--LKLDEDRVITG-SE----NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~--~~~~~~~l~~~-~~----dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 142 (203)
+.....++. ....|..+ ++++++.|+.. .. ...|+..++..+.....+..... ....+.|+|++++++..+
T Consensus 269 ~~~~~~lT~-G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~-~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 269 GGKPRQLTS-GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDG-DHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp SSEEEESS--SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSS-TTEEEEE-TTSSEEEEEE
T ss_pred ccceecccc-CceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCC-CceEEEECCCCCEEEEEE
Confidence 455556666 66677666 68887776644 33 23465566663445556665533 225899999999987544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.015 Score=49.23 Aligned_cols=97 Identities=15% Similarity=0.227 Sum_probs=66.5
Q ss_pred EEEEEcCCCeEEEEEcCCC--eEEEe-e--cCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCc
Q 028802 9 KLLGTSGDGTLSVCNLRKN--TVQTR-S--EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS 83 (203)
Q Consensus 9 ~l~~~~~d~~i~v~d~~~~--~~~~~-~--~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 83 (203)
..+.|-.++.|+.||.+-. +++.. . ........|++-+.+| +||+|+.+|.|++||-- +......+.+ -..+
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~~AKT~lp~-lG~p 620 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL-GKRAKTALPG-LGDP 620 (794)
T ss_pred ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeeccc-chhhhhcCCC-CCCC
Confidence 3456667788999998753 23321 1 1223456777766655 78999999999999953 3344445666 6789
Q ss_pred eeEE-EeeCCCEEEEEcCCCcEEEEEc
Q 028802 84 VDAL-LKLDEDRVITGSENGLISLVGI 109 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~dg~v~v~d~ 109 (203)
|..+ .+.+|++|++.|.. .|.+++.
T Consensus 621 I~~iDvt~DGkwilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 621 IIGIDVTADGKWILATCKT-YLLLIDT 646 (794)
T ss_pred eeEEEecCCCcEEEEeecc-eEEEEEE
Confidence 9999 89999999877655 4556654
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.078 Score=43.81 Aligned_cols=144 Identities=8% Similarity=0.072 Sum_probs=72.2
Q ss_pred cCCEEEEEcCCC-----eEEEEEcCCCeE--EEeecCCcccEEEEEEeeCCCEEEEecCCC-------------------
Q 028802 6 DAMKLLGTSGDG-----TLSVCNLRKNTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQSG------------------- 59 (203)
Q Consensus 6 ~~~~l~~~~~d~-----~i~v~d~~~~~~--~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~------------------- 59 (203)
+++..+.|+.++ ++..||..++.- +..+.........+ .-++...+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccc
Confidence 455666776643 477888876532 22222211111112 23677777776542
Q ss_pred ----eEEEEEcCCccccceeeecCCCCce-eEEEeeCCCEEEEEcCC------CcEEEEEccC-Ccee--eeeccCCCcc
Q 028802 60 ----TVLLYSWGYFKDCSDRFVGLSPNSV-DALLKLDEDRVITGSEN------GLISLVGILP-NRII--QPIAEHSEYP 125 (203)
Q Consensus 60 ----~i~v~d~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~l~~~~~d------g~v~v~d~~~-~~~~--~~~~~~~~~~ 125 (203)
.+..||..+ ..+..+........ .++..-+++..+.|+.+ ..+..||..+ .+-. ..+... ...
T Consensus 429 ~~~~~ve~YDP~t--d~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~-r~~ 505 (557)
T PHA02713 429 HSSNKVIRYDTVN--NIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR-LSA 505 (557)
T ss_pred cccceEEEECCCC--CeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc-ccc
Confidence 466777653 22322221001111 11234466666777653 2367899887 4432 223222 111
Q ss_pred eEEEEEeCCCCeEEEEeCCC--cEEEEeCCCcc
Q 028802 126 IESLALSHDRKFLGSISHDS--MLKLWDLDDIL 156 (203)
Q Consensus 126 i~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~ 156 (203)
...++ -++...++|+.++ .+..||..+.+
T Consensus 506 ~~~~~--~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 506 LHTIL--HDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred ceeEE--ECCEEEEEeeecceeehhhcCccccc
Confidence 22222 2777888888887 66777766543
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.008 Score=31.78 Aligned_cols=29 Identities=7% Similarity=0.217 Sum_probs=27.3
Q ss_pred ceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 125 PIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 125 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
.|..++|+|....||.+..+|.|.+|.+.
T Consensus 13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 69999999999999999999999999983
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0074 Score=31.90 Aligned_cols=31 Identities=16% Similarity=0.340 Sum_probs=28.2
Q ss_pred cccEEEEEEeeCCCEEEEecCCCeEEEEEcC
Q 028802 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 37 ~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~ 67 (203)
...|..++|+|...+|+.++.+|.|.+|.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4568999999999999999999999999984
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.15 Score=36.88 Aligned_cols=93 Identities=12% Similarity=0.061 Sum_probs=59.1
Q ss_pred EEEEEEeeCCCEEEEe-cCCCeEEEEEc--CCcc----ccceeeecC--CCCc-eeEE-EeeCCCEEEEEcCCCcEEEEE
Q 028802 40 LTSVVLMKNGRKVVCG-SQSGTVLLYSW--GYFK----DCSDRFVGL--SPNS-VDAL-LKLDEDRVITGSENGLISLVG 108 (203)
Q Consensus 40 i~~l~~~~~~~~l~~~-~~d~~i~v~d~--~~~~----~~~~~~~~~--~~~~-v~~~-~~~~~~~l~~~~~dg~v~v~d 108 (203)
-+.++|+.+.+.+... +.+-.|.-||. .+.. ..+-.+... .... .-.+ ...+|++.++.-+.++|...|
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence 3568898877766554 44667766774 3211 111111110 0000 1111 355778888888889999999
Q ss_pred ccCCceeeeeccCCCcceEEEEEeC
Q 028802 109 ILPNRIIQPIAEHSEYPIESLALSH 133 (203)
Q Consensus 109 ~~~~~~~~~~~~~~~~~i~~~~~~~ 133 (203)
+.+|+.+.++...+. .|++++|--
T Consensus 240 p~tGK~L~eiklPt~-qitsccFgG 263 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTP-QITSCCFGG 263 (310)
T ss_pred CCCCcEEEEEEcCCC-ceEEEEecC
Confidence 999999999988865 899999954
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.1 Score=41.36 Aligned_cols=111 Identities=16% Similarity=0.099 Sum_probs=66.7
Q ss_pred EEEEEeeCCCEEEEe-cCC----CeEEEEEcCCccccce-eeecCCCCceeEE-EeeCCCEEEEEcCCC-----------
Q 028802 41 TSVVLMKNGRKVVCG-SQS----GTVLLYSWGYFKDCSD-RFVGLSPNSVDAL-LKLDEDRVITGSENG----------- 102 (203)
Q Consensus 41 ~~l~~~~~~~~l~~~-~~d----~~i~v~d~~~~~~~~~-~~~~~~~~~v~~~-~~~~~~~l~~~~~dg----------- 102 (203)
....++|++++|+.+ +.. ..++++|+.+. ..+. .+.. . ....+ |.+++..|+....+.
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg-~~l~d~i~~--~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG-KFLPDGIEN--P-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT-EEEEEEEEE--E-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCC-cCcCCcccc--c-ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 357789999988864 333 36999999864 3333 2222 1 12226 899988877665322
Q ss_pred cEEEEEccCCcee--eeeccCCCcc-eEEEEEeCCCCeEEEEe---CC-CcEEEEeCCCc
Q 028802 103 LISLVGILPNRII--QPIAEHSEYP-IESLALSHDRKFLGSIS---HD-SMLKLWDLDDI 155 (203)
Q Consensus 103 ~v~v~d~~~~~~~--~~~~~~~~~~-i~~~~~~~~~~~l~~~~---~d-~~i~iwd~~~~ 155 (203)
.|+.|.+.+.... ..+......- ...+..++++++|+... .+ ..+++.++...
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 3777887765322 3344432222 56788999999976543 23 45788888764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.26 Score=40.51 Aligned_cols=47 Identities=15% Similarity=0.095 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCe
Q 028802 91 DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF 137 (203)
Q Consensus 91 ~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 137 (203)
.+.+++.+..+|.++.+|.++|+.+..++......-.=+.|.-+|+.
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~q 517 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQ 517 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEE
Confidence 55677778889999999999999998887653211112344456643
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.27 Score=37.41 Aligned_cols=146 Identities=16% Similarity=0.109 Sum_probs=77.3
Q ss_pred cccccCCEE-EEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee---
Q 028802 2 TFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV--- 77 (203)
Q Consensus 2 ~~sp~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--- 77 (203)
.|.++...| .+--..+.|.-|+..++... .+.. ...+.++..-..+..|+++... +.++++... ..+..+.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~-p~~~~~~~~~d~~g~Lv~~~~g--~~~~~~~~~-~~~t~~~~~~ 105 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPS-PGGFSSGALIDAGGRLIACEHG--VRLLDPDTG-GKITLLAEPE 105 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEEC-CCCcccceeecCCCeEEEEccc--cEEEeccCC-ceeEEecccc
Confidence 356666644 34345677888877655332 2222 2334444444444455554432 455555332 2212111
Q ss_pred -cCCCCceeEE-EeeCCCEEEEEcC-----------CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe-C
Q 028802 78 -GLSPNSVDAL-LKLDEDRVITGSE-----------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-H 143 (203)
Q Consensus 78 -~~~~~~v~~~-~~~~~~~l~~~~~-----------dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~ 143 (203)
.........+ ..|+|.+.+.-.. -|.|+.++. .+..+..+..+-. .-..++||||++.|+.+. .
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~-~~NGla~SpDg~tly~aDT~ 183 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLT-IPNGLAFSPDGKTLYVADTP 183 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEE-ecCceEECCCCCEEEEEeCC
Confidence 1011233444 6788776664333 134555554 4556555555322 456799999998877665 4
Q ss_pred CCcEEEEeCCC
Q 028802 144 DSMLKLWDLDD 154 (203)
Q Consensus 144 d~~i~iwd~~~ 154 (203)
.+.|.-|++..
T Consensus 184 ~~~i~r~~~d~ 194 (307)
T COG3386 184 ANRIHRYDLDP 194 (307)
T ss_pred CCeEEEEecCc
Confidence 57888888863
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.25 Score=40.93 Aligned_cols=143 Identities=13% Similarity=0.096 Sum_probs=68.3
Q ss_pred cCCEEEEEcCC------CeEEEEEcCCCeEE--EeecCCcccEEEEEEeeCCCEEEEecCCC-----eEEEEEcCCcccc
Q 028802 6 DAMKLLGTSGD------GTLSVCNLRKNTVQ--TRSEFSEEELTSVVLMKNGRKVVCGSQSG-----TVLLYSWGYFKDC 72 (203)
Q Consensus 6 ~~~~l~~~~~d------~~i~v~d~~~~~~~--~~~~~~~~~i~~l~~~~~~~~l~~~~~d~-----~i~v~d~~~~~~~ 72 (203)
++..++.|+.+ ..+..||..++.-. ..+....... ....-++...+.|+.++ .+..||..+ ..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~--~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~--~~ 378 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF--SLAVIDDTIYAIGGQNGTNVERTIECYTMGD--DK 378 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce--eEEEECCEEEEECCcCCCCCCceEEEEECCC--Ce
Confidence 34455666543 34777887765321 1111111111 12233677777777653 478888763 23
Q ss_pred ceeeecCCCCcee--EEEeeCCCEEEEEcCCC-----------------------cEEEEEccCCceeeeeccCCCcceE
Q 028802 73 SDRFVGLSPNSVD--ALLKLDEDRVITGSENG-----------------------LISLVGILPNRIIQPIAEHSEYPIE 127 (203)
Q Consensus 73 ~~~~~~~~~~~v~--~~~~~~~~~l~~~~~dg-----------------------~v~v~d~~~~~~~~~~~~~~~~~i~ 127 (203)
+..+.. -..+.. ++..-++...+.|+.++ .+..||+.+.+-...-..... ...
T Consensus 379 W~~~~~-mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~-r~~ 456 (557)
T PHA02713 379 WKMLPD-MPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG-TIR 456 (557)
T ss_pred EEECCC-CCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcc-ccc
Confidence 333222 111111 12344677777776542 477788776543221111111 111
Q ss_pred EEEEeCCCCeEEEEeCC------CcEEEEeCCC
Q 028802 128 SLALSHDRKFLGSISHD------SMLKLWDLDD 154 (203)
Q Consensus 128 ~~~~~~~~~~l~~~~~d------~~i~iwd~~~ 154 (203)
..+..-+++..+.|+.+ ..+..||..+
T Consensus 457 ~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 457 PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred CcEEEECCEEEEEeCCCCCCccceeEEEecCCC
Confidence 11223356666666643 2356777765
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.019 Score=49.79 Aligned_cols=137 Identities=15% Similarity=0.031 Sum_probs=84.8
Q ss_pred ccccCCEEEEE--cCCCeEEEEEcCCCe--------EEE---eecCCcccEEEEEEeeCCC-EEEEecCCCeEEEEEcCC
Q 028802 3 FAADAMKLLGT--SGDGTLSVCNLRKNT--------VQT---RSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGY 68 (203)
Q Consensus 3 ~sp~~~~l~~~--~~d~~i~v~d~~~~~--------~~~---~~~~~~~~i~~l~~~~~~~-~l~~~~~d~~i~v~d~~~ 68 (203)
.++|+...++. +.+-.|.+||+.+-. ++. ..........++.|+|.-. ..+++..|+.|++..+..
T Consensus 108 ~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~ 187 (1405)
T KOG3630|consen 108 CFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQ 187 (1405)
T ss_pred eccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhh
Confidence 45565544333 334478899987421 111 1111223456778888432 345667789999888764
Q ss_pred ccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccC---CCcceEEEEEeCCCCeEEEEe
Q 028802 69 FKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEH---SEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 69 ~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~ 142 (203)
....+..+. .....+++ |+|.|+.++.|-..|++.-|-.. .+....+.+. ....|.+|+|-....+|++-+
T Consensus 188 ~~~~v~s~p--~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 188 LAQNVTSFP--VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred hhhhhcccC--cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence 444444444 35567777 99999999999999999887643 3333333222 124799999988877776543
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.29 Score=40.24 Aligned_cols=142 Identities=12% Similarity=0.018 Sum_probs=68.3
Q ss_pred cCCEEEEEcCC-----CeEEEEEcCCCeEE--EeecCCcccEEEEEEeeCCCEEEEecCC------CeEEEEEcCCcccc
Q 028802 6 DAMKLLGTSGD-----GTLSVCNLRKNTVQ--TRSEFSEEELTSVVLMKNGRKVVCGSQS------GTVLLYSWGYFKDC 72 (203)
Q Consensus 6 ~~~~l~~~~~d-----~~i~v~d~~~~~~~--~~~~~~~~~i~~l~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~ 72 (203)
+++.++.|+.+ ..+..||..+++-. ..+....... ++ ..-++..++.|+.. ..+..||..+ ..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t--~~ 417 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CV-VNVNNLIYVIGGISKNDELLKTVECFSLNT--NK 417 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eE-EEECCEEEEECCcCCCCcccceEEEEeCCC--Ce
Confidence 45556666654 34677887665322 1111111111 12 22356666776632 4578888763 22
Q ss_pred ceeeecCCCCc--eeEEEeeCCCEEEEEcCC--------CcEEEEEccCCceeee--eccCCCcceEEEEEeCCCCeEEE
Q 028802 73 SDRFVGLSPNS--VDALLKLDEDRVITGSEN--------GLISLVGILPNRIIQP--IAEHSEYPIESLALSHDRKFLGS 140 (203)
Q Consensus 73 ~~~~~~~~~~~--v~~~~~~~~~~l~~~~~d--------g~v~v~d~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~ 140 (203)
+..+.. -+.+ -.++...++..++.|+.. ..+.+||+.+++-... +... ......+. .++..++.
T Consensus 418 W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-r~~~~~~~--~~~~iyv~ 493 (534)
T PHA03098 418 WSKGSP-LPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP-RINASLCI--FNNKIYVV 493 (534)
T ss_pred eeecCC-CCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc-cccceEEE--ECCEEEEE
Confidence 322221 1111 112234456666666542 2378899877643321 1111 11111222 26666677
Q ss_pred EeCC-----CcEEEEeCCCc
Q 028802 141 ISHD-----SMLKLWDLDDI 155 (203)
Q Consensus 141 ~~~d-----~~i~iwd~~~~ 155 (203)
|+.+ ..+.+||..+.
T Consensus 494 GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 494 GGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred cCCcCCcccceeEEEeCCCC
Confidence 7643 46788887654
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.6 Score=39.77 Aligned_cols=105 Identities=10% Similarity=-0.002 Sum_probs=61.2
Q ss_pred cccccCCEEEEEcC-----CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCC------CeEEEEEcCCcc
Q 028802 2 TFAADAMKLLGTSG-----DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS------GTVLLYSWGYFK 70 (203)
Q Consensus 2 ~~sp~~~~l~~~~~-----d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d------~~i~v~d~~~~~ 70 (203)
.|||+|++|+.+.. ...|++.++.++..+........ ..++|.+|++.|+.+..+ ..|+.+++.+..
T Consensus 133 ~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~ 210 (686)
T PRK10115 133 AITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPA 210 (686)
T ss_pred EECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCCh
Confidence 58999998877632 34688999988753322111111 458999999877665432 367777776532
Q ss_pred ccc-eeeecCCCCcee-EEE-eeCCCEEEEEcC---CCcEEEEEc
Q 028802 71 DCS-DRFVGLSPNSVD-ALL-KLDEDRVITGSE---NGLISLVGI 109 (203)
Q Consensus 71 ~~~-~~~~~~~~~~v~-~~~-~~~~~~l~~~~~---dg~v~v~d~ 109 (203)
... ..+.. ...... ..+ +.++.+++..+. ++.+.+++.
T Consensus 211 ~~d~lv~~e-~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 211 SQDELVYEE-KDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred hHCeEEEee-CCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 122 22332 222233 224 447777665443 456888884
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.39 Score=35.44 Aligned_cols=109 Identities=14% Similarity=0.076 Sum_probs=66.2
Q ss_pred cEEEEEEeeCCCEEEEec---CCCeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEE-ccCCc
Q 028802 39 ELTSVVLMKNGRKVVCGS---QSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVG-ILPNR 113 (203)
Q Consensus 39 ~i~~l~~~~~~~~l~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d-~~~~~ 113 (203)
.+.+.++++++..++... ....++++... +.....+.+ ..+... |++++...+....+...+++. ..++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g---~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTG---GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccC---CccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 688899999998876655 33455555433 222222232 255555 899988877777666666663 23332
Q ss_pred ee-eeeccCCCc-ceEEEEEeCCCCeEEEEe---CCCcEEEEeC
Q 028802 114 II-QPIAEHSEY-PIESLALSHDRKFLGSIS---HDSMLKLWDL 152 (203)
Q Consensus 114 ~~-~~~~~~~~~-~i~~~~~~~~~~~l~~~~---~d~~i~iwd~ 152 (203)
.. ..+...... .|..+.++|||..++... .++.|.+=-+
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V 143 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGV 143 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence 22 122222111 699999999999877555 3566776654
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.22 Score=39.44 Aligned_cols=88 Identities=16% Similarity=0.128 Sum_probs=57.7
Q ss_pred ecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE--EeeCC----------------C-
Q 028802 33 SEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL--LKLDE----------------D- 93 (203)
Q Consensus 33 ~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~--~~~~~----------------~- 93 (203)
+......+.+|..+|.+++.++...-|+|.++|+.. +..++.++++....+.-+ ..... .
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCC-ChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEE
Confidence 334445688999999999999988889999999974 567777776222222212 11111 1
Q ss_pred EEEEEcCCCcEEEEEccCCceeeeeccC
Q 028802 94 RVITGSENGLISLVGILPNRIIQPIAEH 121 (203)
Q Consensus 94 ~l~~~~~dg~v~v~d~~~~~~~~~~~~~ 121 (203)
+++.+-..|.|-||.++.|..+..+...
T Consensus 382 LvIyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred EEEEeccCCeEEEEecCCCCEEEEEEeC
Confidence 2334556788888888888777666544
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.43 Score=37.80 Aligned_cols=126 Identities=13% Similarity=0.136 Sum_probs=59.1
Q ss_pred CCeEEEEEcCCCeEEEeecCCc--ccEEEEEEeeC--CCEEEEe-cCCCeEEEEEcCCcc-----ccc------------
Q 028802 16 DGTLSVCNLRKNTVQTRSEFSE--EELTSVVLMKN--GRKVVCG-SQSGTVLLYSWGYFK-----DCS------------ 73 (203)
Q Consensus 16 d~~i~v~d~~~~~~~~~~~~~~--~~i~~l~~~~~--~~~l~~~-~~d~~i~v~d~~~~~-----~~~------------ 73 (203)
-.+|.+||+.+.+.++++.-.. .....+.|..+ ..+=+++ .-.++|..|--...+ +.+
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 4679999999999999887543 24556777654 3443333 334444444321111 001
Q ss_pred ----eeeecCCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccCC---ceeeeec-cC-------C-------CcceEEE
Q 028802 74 ----DRFVGLSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILPN---RIIQPIA-EH-------S-------EYPIESL 129 (203)
Q Consensus 74 ----~~~~~~~~~~v~~~-~~~~~~~l~~~~~-dg~v~v~d~~~~---~~~~~~~-~~-------~-------~~~i~~~ 129 (203)
+.+.. -..-++.+ .|.|.++|++++. .|.|+.||+..- +...++. +. . .....-+
T Consensus 301 p~ml~~~~~-~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMv 379 (461)
T PF05694_consen 301 PEMLKPFGA-VPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMV 379 (461)
T ss_dssp -GGGGGG-E-E------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----E
T ss_pred ccccccccc-CCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeE
Confidence 01111 13446777 7999999998775 899999999752 2222211 10 0 0023456
Q ss_pred EEeCCCCeEEEEe
Q 028802 130 ALSHDRKFLGSIS 142 (203)
Q Consensus 130 ~~~~~~~~l~~~~ 142 (203)
.+|-||+.|+...
T Consensus 380 qlS~DGkRlYvTn 392 (461)
T PF05694_consen 380 QLSLDGKRLYVTN 392 (461)
T ss_dssp EE-TTSSEEEEE-
T ss_pred EEccCCeEEEEEe
Confidence 7888998876543
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.11 Score=37.35 Aligned_cols=66 Identities=15% Similarity=0.175 Sum_probs=48.9
Q ss_pred EeeCCCEEEEEcCCCcEEEEEccCCceeeee-------cc------CCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 88 LKLDEDRVITGSENGLISLVGILPNRIIQPI-------AE------HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 88 ~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~-------~~------~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
+...+.++++.+.+|.+++||+.+++.+..- .. .....|..+.++.+|.-|++-+ +|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4667889999999999999999987654221 11 1123688999999998887765 57888888643
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.56 Score=38.58 Aligned_cols=143 Identities=9% Similarity=-0.014 Sum_probs=66.8
Q ss_pred CCEEEEEcCC------CeEEEEEcCCCeEEEe--ecCCcccEEEEEEeeCCCEEEEecCC-----CeEEEEEcCCccccc
Q 028802 7 AMKLLGTSGD------GTLSVCNLRKNTVQTR--SEFSEEELTSVVLMKNGRKVVCGSQS-----GTVLLYSWGYFKDCS 73 (203)
Q Consensus 7 ~~~l~~~~~d------~~i~v~d~~~~~~~~~--~~~~~~~i~~l~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~ 73 (203)
+..++.|+.+ ..+..||..++.-... +....... ++ ..-++..++.|+.+ ..+..||..+ ..+
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~-~~~~~~lyv~GG~~~~~~~~~v~~yd~~~--~~W 370 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GV-TVFNNRIYVIGGIYNSISLNTVESWKPGE--SKW 370 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eE-EEECCEEEEEeCCCCCEecceEEEEcCCC--Cce
Confidence 3445555543 2467788776543221 11111111 12 22356677777764 3467777653 223
Q ss_pred eeeecCCCCc--eeEEEeeCCCEEEEEcCC------CcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCC-
Q 028802 74 DRFVGLSPNS--VDALLKLDEDRVITGSEN------GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD- 144 (203)
Q Consensus 74 ~~~~~~~~~~--v~~~~~~~~~~l~~~~~d------g~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d- 144 (203)
..... -..+ -.++...++...+.|+.. ..+..||+.+.+-...-.......-.++ ...++..++.|+.+
T Consensus 371 ~~~~~-lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~ 448 (534)
T PHA03098 371 REEPP-LIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCA-IYHDGKIYVIGGISY 448 (534)
T ss_pred eeCCC-cCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceE-EEECCEEEEECCccC
Confidence 32221 1111 111233466677777632 3578899876543221111111011122 22355566666532
Q ss_pred -------CcEEEEeCCCc
Q 028802 145 -------SMLKLWDLDDI 155 (203)
Q Consensus 145 -------~~i~iwd~~~~ 155 (203)
..+.+||..+.
T Consensus 449 ~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 449 IDNIKVYNIVESYNPVTN 466 (534)
T ss_pred CCCCcccceEEEecCCCC
Confidence 13788887654
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.037 Score=28.45 Aligned_cols=30 Identities=13% Similarity=0.226 Sum_probs=25.1
Q ss_pred ceEEEEEeCCCC---eEEEEeCCCcEEEEeCCC
Q 028802 125 PIESLALSHDRK---FLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 125 ~i~~~~~~~~~~---~l~~~~~d~~i~iwd~~~ 154 (203)
+|.++.|+|+.. +|+.+-.-+.|.|+|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 689999998554 777777889999999995
|
It contains a characteristic DLL sequence motif. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.44 Score=35.60 Aligned_cols=119 Identities=9% Similarity=0.034 Sum_probs=75.3
Q ss_pred cCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC
Q 028802 34 EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN 112 (203)
Q Consensus 34 ~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~ 112 (203)
.+....+.++.|+|+.+.|++........|+-. +.+..+.++.-..-...-.+ +-..+.+.++--.++.+.++.+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt-~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELT-KEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEe-cCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 444566999999999999888777666555533 45677776643122233344 5555666666666788888776644
Q ss_pred ceee-----eec----cCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 113 RIIQ-----PIA----EHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 113 ~~~~-----~~~----~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
..+. .+. .+.......++|.|....|..+-.-.=+.||.+.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 2111 111 1112257789999998888887766667777765
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.48 Score=35.03 Aligned_cols=149 Identities=15% Similarity=0.114 Sum_probs=83.1
Q ss_pred ccccCCEEEEEcCCC--eEEEEEcCCCeEEEeecCCcc-cEEEEEEeeCCCEEEEe-cCCCeEEEEEcCCccccceeeec
Q 028802 3 FAADAMKLLGTSGDG--TLSVCNLRKNTVQTRSEFSEE-ELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~--~i~v~d~~~~~~~~~~~~~~~-~i~~l~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
|..+|.++-+.+.-| .|+.+|+.+++......-... ---.++.. +..|+-- =..+...+||..+ -+.+..+.-
T Consensus 52 ~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~t-l~~~~~~~y 128 (264)
T PF05096_consen 52 FLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNT-LKKIGTFPY 128 (264)
T ss_dssp EEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTT-TEEEEEEE-
T ss_pred ecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEcccc-ceEEEEEec
Confidence 445666666666544 799999999987655543221 11233333 3344433 3578999999875 355555543
Q ss_pred CCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCC----cceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 79 LSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE----YPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 79 ~~~~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
.+.=+.+ ..++..|+.+.....|+++|..+.+....+..... ..+..+.|. +|...|=.-....|...|..+
T Consensus 129 --~~EGWGL-t~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~t 204 (264)
T PF05096_consen 129 --PGEGWGL-TSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPET 204 (264)
T ss_dssp --SSS--EE-EECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT
T ss_pred --CCcceEE-EcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCC
Confidence 3334444 46777888877788899999888776665543311 134555664 454444444555666666666
Q ss_pred cccC
Q 028802 155 ILKG 158 (203)
Q Consensus 155 ~~~~ 158 (203)
+...
T Consensus 205 G~V~ 208 (264)
T PF05096_consen 205 GKVV 208 (264)
T ss_dssp -BEE
T ss_pred CeEE
Confidence 6543
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.0012 Score=51.79 Aligned_cols=132 Identities=11% Similarity=0.155 Sum_probs=86.6
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEE-ecCCCeEEEEEcCCccccceeeecCC
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
.|-|.+.-++.+..+..+..||-.. +....+. .......++|..++..+++ +-..+.+++||+... .-+.+.. .
T Consensus 41 ~w~~e~~nlavaca~tiv~~YD~ag-q~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~e--ytqqLE~-g 115 (615)
T KOG2247|consen 41 RWRPEGHNLAVACANTIVIYYDKAG-QVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSE--YTQQLES-G 115 (615)
T ss_pred eEecCCCceehhhhhhHHHhhhhhc-ceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhh--hHHHHhc-c
Confidence 3566666677777777777887443 3332222 2345667888888876554 455789999999743 2222322 2
Q ss_pred CCceeE-E-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEE
Q 028802 81 PNSVDA-L-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLG 139 (203)
Q Consensus 81 ~~~v~~-~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 139 (203)
...-.+ + |++.+..++.+...|.+.+|+..+.+.+...-.|.. +++++++.+.+..+.
T Consensus 116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~R-Rgtq~av~lEd~vil 175 (615)
T KOG2247|consen 116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQR-RGTQIAVTLEDYVIL 175 (615)
T ss_pred CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhccccc-ceeEEEecccceeee
Confidence 222222 3 889899999999999999999887665544433544 789999999875443
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.75 Score=38.26 Aligned_cols=145 Identities=12% Similarity=0.031 Sum_probs=76.8
Q ss_pred cCCEEEEEcCC------CeEEEEEcCCCeEEEeecCCcccEEEEEE-eeCCCEEEEecCCC-----eEEEEEcCCccccc
Q 028802 6 DAMKLLGTSGD------GTLSVCNLRKNTVQTRSEFSEEELTSVVL-MKNGRKVVCGSQSG-----TVLLYSWGYFKDCS 73 (203)
Q Consensus 6 ~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~~~i~~l~~-~~~~~~l~~~~~d~-----~i~v~d~~~~~~~~ 73 (203)
++...++|+.+ .++..||..+++-.. +..-..+-..... .-+|...++|+.+| ++..||..+ ..+
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~--~~W 408 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVT--NKW 408 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCC--Ccc
Confidence 45566788877 357788887664221 1111111111222 23677888888886 477787653 333
Q ss_pred eeeecCCCCceeEE--EeeCCCEEEEEcCCC------cEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCC
Q 028802 74 DRFVGLSPNSVDAL--LKLDEDRVITGSENG------LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS 145 (203)
Q Consensus 74 ~~~~~~~~~~v~~~--~~~~~~~l~~~~~dg------~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 145 (203)
..... ........ ..-+|.+.++|+.++ .+..||..++.-...-.......-..++ .-++...+.|+.|+
T Consensus 409 ~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a-~~~~~iYvvGG~~~ 486 (571)
T KOG4441|consen 409 TPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA-VLNGKIYVVGGFDG 486 (571)
T ss_pred cccCC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEE-EECCEEEEECCccC
Confidence 33322 11122222 355788888887543 4778888876543322222111111222 23566777777665
Q ss_pred c-----EEEEeCCCc
Q 028802 146 M-----LKLWDLDDI 155 (203)
Q Consensus 146 ~-----i~iwd~~~~ 155 (203)
. +..||..+.
T Consensus 487 ~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 487 TSALSSVERYDPETN 501 (571)
T ss_pred CCccceEEEEcCCCC
Confidence 3 566776554
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.69 Score=36.14 Aligned_cols=122 Identities=9% Similarity=-0.048 Sum_probs=61.3
Q ss_pred eEEEEEcCCCeEEEeecCCcccEEEEEEeeCC-CEEEEecC---CC-eEEEEEcCCccccceeeecCCCCceeE-E--Ee
Q 028802 18 TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQ---SG-TVLLYSWGYFKDCSDRFVGLSPNSVDA-L--LK 89 (203)
Q Consensus 18 ~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~---d~-~i~v~d~~~~~~~~~~~~~~~~~~v~~-~--~~ 89 (203)
.|...|+.+|+....+. ....+..+.|+|.. ..|+.|-+ +. .-+||-++..+.....+.. +.....+ - |.
T Consensus 169 ~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~-~~~~e~~gHEfw~ 246 (386)
T PF14583_consen 169 RIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR-RMEGESVGHEFWV 246 (386)
T ss_dssp EEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-
T ss_pred eEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeec-CCCCccccccccc
Confidence 46666777776544443 35667788999854 45555443 22 2477877665555555544 3332222 2 79
Q ss_pred eCCCEEEEEcC-----CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCC
Q 028802 90 LDEDRVITGSE-----NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 90 ~~~~~l~~~~~-----dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 144 (203)
|+|..|..-+. +..|.-+|+.+++........ +...+.-++||++++--+.|
T Consensus 247 ~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p---~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 247 PDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP---WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TTSSEEEEEE--
T ss_pred CCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC---ceeeeEEcCCCCEEEecCCC
Confidence 99988776432 345777888887655433332 45566778899888754443
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.92 Score=37.37 Aligned_cols=150 Identities=16% Similarity=0.101 Sum_probs=86.8
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCc----ccEEEEEEeeCCCEEEEec------CCCeEEEEEcCCccccceeee
Q 028802 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSE----EELTSVVLMKNGRKVVCGS------QSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 8 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~----~~i~~l~~~~~~~~l~~~~------~d~~i~v~d~~~~~~~~~~~~ 77 (203)
..++.++.++.|.-+|..+|+.+....... ..+.+.-.--++ .++++. .+|.|..+|..+.....+.-.
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 467778889999999999999887664311 112111111133 444443 257888888865432222111
Q ss_pred c-----------------------------CCCCceeEE--EeeCCCEEEEEcCC-----C-----------cEEEEEcc
Q 028802 78 G-----------------------------LSPNSVDAL--LKLDEDRVITGSEN-----G-----------LISLVGIL 110 (203)
Q Consensus 78 ~-----------------------------~~~~~v~~~--~~~~~~~l~~~~~d-----g-----------~v~v~d~~ 110 (203)
. .....++.. +.|...+++.+... + .|.-.|++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 0 001123322 45556666665521 2 57778899
Q ss_pred CCceeeeeccCCC--------cceEEEEEeCCCC---eEEEEeCCCcEEEEeCCCcccC
Q 028802 111 PNRIIQPIAEHSE--------YPIESLALSHDRK---FLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 111 ~~~~~~~~~~~~~--------~~i~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
+|+....++.... ....-+.+..+|+ .++.+..+|.+++.|-++++..
T Consensus 280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 9998877654221 1112223334666 5678889999999999998763
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.13 Score=37.12 Aligned_cols=72 Identities=29% Similarity=0.340 Sum_probs=50.8
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEee-------c-------CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCC
Q 028802 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRS-------E-------FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY 68 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~-------~-------~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~ 68 (203)
+..++++|++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-+++-+ +|..+.|+...
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 3457888999999999999999987654321 1 2446688888888888777665 47788888752
Q ss_pred ccccceeee
Q 028802 69 FKDCSDRFV 77 (203)
Q Consensus 69 ~~~~~~~~~ 77 (203)
.++..+.
T Consensus 97 --~~W~~vs 103 (219)
T PF07569_consen 97 --GCWIRVS 103 (219)
T ss_pred --ceeEEec
Confidence 4444443
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.78 Score=34.81 Aligned_cols=108 Identities=14% Similarity=0.142 Sum_probs=57.1
Q ss_pred CcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEcc-CCc
Q 028802 36 SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL-PNR 113 (203)
Q Consensus 36 ~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~-~~~ 113 (203)
....+..+.-+++|++++++.....+.-||-. ..............+..+ |.|++.+.+.+ ..|.|++=+.. ...
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G--~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPG--QTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT---SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCC--CccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 34567888888999999998876666777743 233333332135678888 99998776655 78888877621 111
Q ss_pred eeee--ecc-CCCcceEEEEEeCCCCeEEEEeCCCcE
Q 028802 114 IIQP--IAE-HSEYPIESLALSHDRKFLGSISHDSML 147 (203)
Q Consensus 114 ~~~~--~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i 147 (203)
.... ... .....+..++|.+++...++++ .|.|
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l 255 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL 255 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E
T ss_pred ccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE
Confidence 1111 111 1123588999999877777665 4443
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.98 Score=35.87 Aligned_cols=150 Identities=11% Similarity=0.086 Sum_probs=73.4
Q ss_pred ccCCEEEEEc--C----CCeEEEEEcCCCeEEEeecCCc---ccEEEEEEeeCCCEEEEecC------------------
Q 028802 5 ADAMKLLGTS--G----DGTLSVCNLRKNTVQTRSEFSE---EELTSVVLMKNGRKVVCGSQ------------------ 57 (203)
Q Consensus 5 p~~~~l~~~~--~----d~~i~v~d~~~~~~~~~~~~~~---~~i~~l~~~~~~~~l~~~~~------------------ 57 (203)
|+|+.++++- . -|-+.++|-.+-+.....+... .--..+-|.|..+.++++..
T Consensus 139 p~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~ 218 (461)
T PF05694_consen 139 PDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAG 218 (461)
T ss_dssp SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH
T ss_pred CCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcc
Confidence 6777777652 2 2457788877766665554322 23456778888888887643
Q ss_pred --CCeEEEEEcCCccccceeeecCCCC--ceeEE-E--eeCCCEEEEEc-CCCcEEEEEc-cCCc----eeeeeccC---
Q 028802 58 --SGTVLLYSWGYFKDCSDRFVGLSPN--SVDAL-L--KLDEDRVITGS-ENGLISLVGI-LPNR----IIQPIAEH--- 121 (203)
Q Consensus 58 --d~~i~v~d~~~~~~~~~~~~~~~~~--~v~~~-~--~~~~~~l~~~~-~dg~v~v~d~-~~~~----~~~~~~~~--- 121 (203)
..++.+||+.. .+.++++.- ... .+..+ | .|+..+-++++ ....|..|-- ..+. .+..+...
T Consensus 219 ~yG~~l~vWD~~~-r~~~Q~idL-g~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~ 296 (461)
T PF05694_consen 219 KYGHSLHVWDWST-RKLLQTIDL-GEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVE 296 (461)
T ss_dssp -S--EEEEEETTT-TEEEEEEES--TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--
T ss_pred cccCeEEEEECCC-CcEeeEEec-CCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccC
Confidence 25899999974 566777654 322 23333 4 56655544443 3445555543 3332 11112110
Q ss_pred -----C--------CcceEEEEEeCCCCeEEEEe-CCCcEEEEeCCCcc
Q 028802 122 -----S--------EYPIESLALSHDRKFLGSIS-HDSMLKLWDLDDIL 156 (203)
Q Consensus 122 -----~--------~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~ 156 (203)
. ..-|+.|.+|.|.++|..++ ..|.|+.||+....
T Consensus 297 ~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 297 GWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred cccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 0 01378999999999998777 78999999997754
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.13 Score=40.77 Aligned_cols=153 Identities=17% Similarity=0.182 Sum_probs=89.5
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEE-Eee-cCCc----ccEE-EEEEeeCCCEEEEecCCCeEEEE-EcCCcccc--
Q 028802 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQ-TRS-EFSE----EELT-SVVLMKNGRKVVCGSQSGTVLLY-SWGYFKDC-- 72 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~v~d~~~~~~~-~~~-~~~~----~~i~-~l~~~~~~~~l~~~~~d~~i~v~-d~~~~~~~-- 72 (203)
..|+|+.|+.-+. .++.|+++.+.... .++ .... ..|+ .+..-..|..+.+++.||-|.-| |++..+..
T Consensus 228 L~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l 306 (733)
T COG4590 228 LTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQPHL 306 (733)
T ss_pred ECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCCCcc
Confidence 4689998877666 77888887653221 111 1111 1121 11122345667788888877766 65533221
Q ss_pred --ceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEE
Q 028802 73 --SDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 73 --~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 149 (203)
++.+.- ....+..+ -..+.+.+++-...|.+.++.....+.+..-+.. + .+..++++|.+.+|++-. .|.|++
T Consensus 307 ~h~R~f~l-~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~-~-~~~~~~~Sp~~~~Ll~e~-~gki~~ 382 (733)
T COG4590 307 NHIRNFKL-APAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAY-Q-APQLVAMSPNQAYLLSED-QGKIRL 382 (733)
T ss_pred eeeecccc-CcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhh-c-CcceeeeCcccchheeec-CCceEE
Confidence 122222 22334333 2334566777788888888765444443222222 3 567789999999988664 578999
Q ss_pred EeCCCcccCCC
Q 028802 150 WDLDDILKGSG 160 (203)
Q Consensus 150 wd~~~~~~~~~ 160 (203)
+.+++..++-.
T Consensus 383 ~~l~Nr~Peis 393 (733)
T COG4590 383 AQLENRNPEIS 393 (733)
T ss_pred EEecCCCCCcc
Confidence 99998877643
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.21 Score=40.21 Aligned_cols=95 Identities=13% Similarity=0.207 Sum_probs=62.9
Q ss_pred EEEcCCCeEEEEEcCC-Ce-EEEeecCC----cccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCce
Q 028802 11 LGTSGDGTLSVCNLRK-NT-VQTRSEFS----EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSV 84 (203)
Q Consensus 11 ~~~~~d~~i~v~d~~~-~~-~~~~~~~~----~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v 84 (203)
+.|-.++.|+-||.+- +. .+...+.| .....|.+-..+ -++++|+.+|.|++||- ........+.+ -..+|
T Consensus 398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdr-i~~~AKTAlPg-LG~~I 474 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDR-IGRRAKTALPG-LGDAI 474 (644)
T ss_pred EEeecCCceEEecccccCcceeeeeeccccccccccceeeecCC-ceEEEeecCCcEEeehh-hhhhhhhcccc-cCCce
Confidence 3455678899999873 22 22222222 223455555444 47899999999999997 33444556777 77889
Q ss_pred eEE-EeeCCCEEEEEcCCCcEEEEEc
Q 028802 85 DAL-LKLDEDRVITGSENGLISLVGI 109 (203)
Q Consensus 85 ~~~-~~~~~~~l~~~~~dg~v~v~d~ 109 (203)
..+ .+.+|++|+..|.. .+.+.++
T Consensus 475 ~hVdvtadGKwil~Tc~t-yLlLi~t 499 (644)
T KOG2395|consen 475 KHVDVTADGKWILATCKT-YLLLIDT 499 (644)
T ss_pred eeEEeeccCcEEEEeccc-EEEEEEE
Confidence 989 89999998776654 4555554
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=1.4 Score=35.78 Aligned_cols=139 Identities=10% Similarity=-0.106 Sum_probs=65.9
Q ss_pred cCCEEEEEcCC--CeEEEEEcCCCeEE--EeecCCcccEEEEEEeeCCCEEEEecCCC---eEEEEEcCCccccceeeec
Q 028802 6 DAMKLLGTSGD--GTLSVCNLRKNTVQ--TRSEFSEEELTSVVLMKNGRKVVCGSQSG---TVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 6 ~~~~l~~~~~d--~~i~v~d~~~~~~~--~~~~~~~~~i~~l~~~~~~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~ 78 (203)
++...+.|+.+ ..+..|+..++.-. ..+..... ......-++...+.|+.++ .+..||..+ ..+.....
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~--~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~--~~W~~~~~ 393 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRC--NPAVASINNVIYVIGGHSETDTTTEYLLPNH--DQWQFGPS 393 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCc--ccEEEEECCEEEEecCcCCCCccEEEEeCCC--CEEEeCCC
Confidence 45555666643 35777887654322 12221111 1112233677777777543 466787653 23332221
Q ss_pred CCCCc--eeEEEeeCCCEEEEEcCCCcEEEEEccCCceee--eeccCCCcceEEEEEeCCCCeEEEEeCC-----CcEEE
Q 028802 79 LSPNS--VDALLKLDEDRVITGSENGLISLVGILPNRIIQ--PIAEHSEYPIESLALSHDRKFLGSISHD-----SMLKL 149 (203)
Q Consensus 79 ~~~~~--v~~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~i 149 (203)
-..+ -.++...++...+.|+ .+.+||..+++-.. .+... .... +++ .-+++..+.|+.+ ..+..
T Consensus 394 -m~~~r~~~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~-r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~ 466 (480)
T PHA02790 394 -TYYPHYKSCALVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYP-RDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEV 466 (480)
T ss_pred -CCCccccceEEEECCEEEEECC---ceEEecCCCCcEeEcCCCCCC-cccc-EEE-EECCEEEEECCcCCCcccceEEE
Confidence 1111 1122344566666653 46788887654332 22111 1112 222 2366777777754 34666
Q ss_pred EeCCCc
Q 028802 150 WDLDDI 155 (203)
Q Consensus 150 wd~~~~ 155 (203)
||..+.
T Consensus 467 Yd~~~~ 472 (480)
T PHA02790 467 YNNRTY 472 (480)
T ss_pred EECCCC
Confidence 766543
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.64 Score=34.50 Aligned_cols=102 Identities=12% Similarity=0.217 Sum_probs=59.5
Q ss_pred eCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceee---------
Q 028802 47 KNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQ--------- 116 (203)
Q Consensus 47 ~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~--------- 116 (203)
..++.|+.|+.+| ++++++........ +. ....|..+ .-|+-+.+++-+ |+.++++++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~-i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTR-IL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcccee-Ee--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence 3578899998888 89999843223322 22 23347777 667666666554 4899999987543322
Q ss_pred ------eeccCCCcceEEEE--EeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 117 ------PIAEHSEYPIESLA--LSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 117 ------~~~~~~~~~i~~~~--~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
.+... . .+..++ -.+.+...+.....+.|.+|.....
T Consensus 80 ~~~~~~~~~~~-~-~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~ 124 (275)
T PF00780_consen 80 SRSLPTKLPET-K-GVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDP 124 (275)
T ss_pred ccccccccccc-C-CeeEEeeccccccceEEEEEECCEEEEEEEECC
Confidence 11111 1 344444 1233444444444668999988663
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.18 Score=25.94 Aligned_cols=30 Identities=7% Similarity=0.042 Sum_probs=25.0
Q ss_pred cEEEEEEeeCC---CEEEEecCCCeEEEEEcCC
Q 028802 39 ELTSVVLMKNG---RKVVCGSQSGTVLLYSWGY 68 (203)
Q Consensus 39 ~i~~l~~~~~~---~~l~~~~~d~~i~v~d~~~ 68 (203)
.+.++.|+|.. .+|+.+-..+.+.++|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 57899999844 4888888889999999984
|
It contains a characteristic DLL sequence motif. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.85 E-value=1.2 Score=37.39 Aligned_cols=96 Identities=11% Similarity=0.168 Sum_probs=60.6
Q ss_pred EEEcCCCeEEEEEcCCCeEEEeec-CCcccEEEEEEe--eCCCEEEEecCCCeEEEEEcC-----Ccc---ccceee--e
Q 028802 11 LGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLM--KNGRKVVCGSQSGTVLLYSWG-----YFK---DCSDRF--V 77 (203)
Q Consensus 11 ~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~i~~l~~~--~~~~~l~~~~~d~~i~v~d~~-----~~~---~~~~~~--~ 77 (203)
++-+...++.|||...+.....-. .....|..+.|. |+++.+++.+..+.|.+|--. +.. ..++.+ .
T Consensus 45 ~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~ 124 (631)
T PF12234_consen 45 VVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDIS 124 (631)
T ss_pred EEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEee
Confidence 333344679999998876543222 346789999997 588888888888989888441 111 122222 2
Q ss_pred cCCCCceeEE-EeeCCCEEEEEcCCCcEEEEE
Q 028802 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVG 108 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d 108 (203)
.....+|... |-++|.+++.+++ .+.|++
T Consensus 125 ~~T~h~Igds~Wl~~G~LvV~sGN--qlfv~d 154 (631)
T PF12234_consen 125 SHTPHPIGDSIWLKDGTLVVGSGN--QLFVFD 154 (631)
T ss_pred cCCCCCccceeEecCCeEEEEeCC--EEEEEC
Confidence 2022567777 8888877665543 467776
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.82 E-value=2.2 Score=36.60 Aligned_cols=72 Identities=17% Similarity=0.287 Sum_probs=48.2
Q ss_pred ceeEE-EeeCCCEEEEEcCCCcEEEEEcc----------CCce-e--ee-------eccCCCcceEEEEEeCC---CCeE
Q 028802 83 SVDAL-LKLDEDRVITGSENGLISLVGIL----------PNRI-I--QP-------IAEHSEYPIESLALSHD---RKFL 138 (203)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~dg~v~v~d~~----------~~~~-~--~~-------~~~~~~~~i~~~~~~~~---~~~l 138 (203)
.|..+ ++|+|.+++..+..|.+ |..+. .|+. + .+ +..+....|..+.|+|. +.+|
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 45666 79999999988887654 33332 1111 1 11 11122237889999996 5899
Q ss_pred EEEeCCCcEEEEeCCCc
Q 028802 139 GSISHDSMLKLWDLDDI 155 (203)
Q Consensus 139 ~~~~~d~~i~iwd~~~~ 155 (203)
++-..|+.|++||+...
T Consensus 165 ~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEecCCEEEEEecCCC
Confidence 99999999999999643
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.37 Score=41.00 Aligned_cols=74 Identities=15% Similarity=0.102 Sum_probs=48.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC----------Ce--EE-Eee--------cCCcccEEEEEEeeC---CCEEEEec
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRK----------NT--VQ-TRS--------EFSEEELTSVVLMKN---GRKVVCGS 56 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~----------~~--~~-~~~--------~~~~~~i~~l~~~~~---~~~l~~~~ 56 (203)
|.+||.|.+|+..+..| |.|..+.. +. .. +++ ..+...|..+.|+|. +..|++-.
T Consensus 90 i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLt 168 (717)
T PF10168_consen 90 ISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLT 168 (717)
T ss_pred EEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEe
Confidence 35789999998888755 44444321 11 11 111 123457889999996 47888889
Q ss_pred CCCeEEEEEcCCcccccee
Q 028802 57 QSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 57 ~d~~i~v~d~~~~~~~~~~ 75 (203)
.|+.+++||+.....+...
T Consensus 169 sdn~lR~y~~~~~~~p~~v 187 (717)
T PF10168_consen 169 SDNTLRLYDISDPQHPWQV 187 (717)
T ss_pred cCCEEEEEecCCCCCCeEE
Confidence 9999999999754444333
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.52 Score=41.53 Aligned_cols=116 Identities=8% Similarity=-0.074 Sum_probs=69.2
Q ss_pred ccEEEEEEeeCCCEEEEe--cCCCeEEEEEcCCccccc----eeeec-----CCCCceeEE-EeeCCCE-EEEEcCCCcE
Q 028802 38 EELTSVVLMKNGRKVVCG--SQSGTVLLYSWGYFKDCS----DRFVG-----LSPNSVDAL-LKLDEDR-VITGSENGLI 104 (203)
Q Consensus 38 ~~i~~l~~~~~~~~l~~~--~~d~~i~v~d~~~~~~~~----~~~~~-----~~~~~v~~~-~~~~~~~-l~~~~~dg~v 104 (203)
.++..+...+|+...++. +.+-.|+.||+....... ..+.. .......++ |+|.-.. .+.+..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 356666677777655443 334489999997422111 11111 012223444 7765433 3445568888
Q ss_pred EEEEccCC-ceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 105 SLVGILPN-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 105 ~v~d~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
+|..+... .....+... ...++++|+|.|..++.|-..|++.-|...-.
T Consensus 181 ~V~~~~~~~~~v~s~p~t--~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le 230 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVT--NSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE 230 (1405)
T ss_pred hhhhhhhhhhhhcccCcc--cceeeEEeccccceeeEecCCCeEEEeecccc
Confidence 87766432 222333332 26899999999999999999999988875443
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.46 E-value=1.9 Score=34.53 Aligned_cols=132 Identities=13% Similarity=0.096 Sum_probs=74.8
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCe--EEEee-cCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccc---eeeecC
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNT--VQTRS-EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS---DRFVGL 79 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~--~~~~~-~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~---~~~~~~ 79 (203)
|.+.++.+.+.|.+.=|-+.... ..-.+ ....++|.++.|++|.+.|++--.+.+|.++......... ...+.
T Consensus 32 DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~- 110 (657)
T KOG2377|consen 32 DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKT- 110 (657)
T ss_pred cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhcc-
Confidence 34444444445555556554321 11111 2346799999999999999999999999999884221111 11222
Q ss_pred CCCceeEEEeeCCCEEEEEcCCCcEEEEEccC-CceeeeeccCCCcceEEEEEeCCCCeEEE
Q 028802 80 SPNSVDALLKLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGS 140 (203)
Q Consensus 80 ~~~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 140 (203)
....|...+..+..-++.....| +-+|...+ .+.+.....+.- .|.-..|.++-+.++-
T Consensus 111 k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~pekrslRlVks~~~-nvnWy~yc~et~v~LL 170 (657)
T KOG2377|consen 111 KNANILGFCWTSSTEIAFITDQG-IEFYQVLPEKRSLRLVKSHNL-NVNWYMYCPETAVILL 170 (657)
T ss_pred CcceeEEEEEecCeeEEEEecCC-eEEEEEchhhhhhhhhhhccc-CccEEEEccccceEee
Confidence 23335555344446666666655 45555433 223333444433 6777888888776443
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.41 E-value=3 Score=36.48 Aligned_cols=135 Identities=16% Similarity=0.171 Sum_probs=83.2
Q ss_pred eEEEEEcCCCeEEEeecCC-c---ccEEEEEEeeC-CCEEEEecC----------CCeEEEEEcCCccccceeeec-CCC
Q 028802 18 TLSVCNLRKNTVQTRSEFS-E---EELTSVVLMKN-GRKVVCGSQ----------SGTVLLYSWGYFKDCSDRFVG-LSP 81 (203)
Q Consensus 18 ~i~v~d~~~~~~~~~~~~~-~---~~i~~l~~~~~-~~~l~~~~~----------d~~i~v~d~~~~~~~~~~~~~-~~~ 81 (203)
.++++|-.+-+.+...+.. . ..+.+..|..| +.++++|+. .|.|.+|.+.. ...++.+.. --.
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e-~~~L~~v~e~~v~ 829 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE-LNSLELVAETVVK 829 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec-CCceeeeeeeeec
Confidence 3667776665544333221 1 23445557776 567776643 47888888764 233332221 024
Q ss_pred CceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 82 NSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 82 ~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+.+.++.--+|++++. -...|++|+..+.+.+..-..+.. ++..+.+.-.|..+++|..-+.|.+...+..+
T Consensus 830 Gav~aL~~fngkllA~--In~~vrLye~t~~~eLr~e~~~~~-~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 830 GAVYALVEFNGKLLAG--INQSVRLYEWTTERELRIECNISN-PIIALDLQVKGDEIAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred cceeehhhhCCeEEEe--cCcEEEEEEccccceehhhhcccC-CeEEEEEEecCcEEEEeeccceEEEEEEeccC
Confidence 5566663335665544 455799999988867665555533 78888888899999999988887776655443
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.61 Score=36.99 Aligned_cols=76 Identities=9% Similarity=0.161 Sum_probs=52.5
Q ss_pred ceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCC-----------------CeEE-EEeC
Q 028802 83 SVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR-----------------KFLG-SISH 143 (203)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------------~~l~-~~~~ 143 (203)
.+.++ .+|.+.+.++...-|.|.++|+..+..+..+++..+..+.-+.....+ .+|+ -+-.
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr 388 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR 388 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence 35566 699999999988889999999999988888877654333222221111 1233 3446
Q ss_pred CCcEEEEeCCCcccC
Q 028802 144 DSMLKLWDLDDILKG 158 (203)
Q Consensus 144 d~~i~iwd~~~~~~~ 158 (203)
-|.|.||.++++..-
T Consensus 389 Rg~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 389 RGILEVWSMRQGPRV 403 (415)
T ss_pred CCeEEEEecCCCCEE
Confidence 789999999887643
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=94.29 E-value=2.2 Score=34.00 Aligned_cols=145 Identities=12% Similarity=0.107 Sum_probs=84.6
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCe-----EEEeecCCcccEEEEEEee-----CCCEEEEecCCCeEEEEEcCCcc-c---
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNT-----VQTRSEFSEEELTSVVLMK-----NGRKVVCGSQSGTVLLYSWGYFK-D--- 71 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~-----~~~~~~~~~~~i~~l~~~~-----~~~~l~~~~~d~~i~v~d~~~~~-~--- 71 (203)
+...|++|+..|.++||+...+. .+...+ -..+|..+..-. ....|++ -.-..+.+|.+.... .
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence 34589999999999999986432 222222 246787776542 2234444 445678888773211 1
Q ss_pred ----cceeeecCCCCc--eeEE----E-eeC-CCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEE
Q 028802 72 ----CSDRFVGLSPNS--VDAL----L-KLD-EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLG 139 (203)
Q Consensus 72 ----~~~~~~~~~~~~--v~~~----~-~~~-~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 139 (203)
.+..+.. |.-. ...+ | ... ..+|.+-+.||.+.+|+-+.......+... - -...++|.+.-..++
T Consensus 114 g~~~~L~~~ye-h~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~-l-lPgPl~Y~~~tDsfv 190 (418)
T PF14727_consen 114 GNQYQLELIYE-HSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDF-L-LPGPLCYCPRTDSFV 190 (418)
T ss_pred CcEEEEEEEEE-EecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCC-C-CCcCeEEeecCCEEE
Confidence 1122222 2111 1111 3 223 457778889999999996543222222221 1 223467888888999
Q ss_pred EEeCCCcEEEEeCCCc
Q 028802 140 SISHDSMLKLWDLDDI 155 (203)
Q Consensus 140 ~~~~d~~i~iwd~~~~ 155 (203)
+++.+..|..|.....
T Consensus 191 t~sss~~l~~Yky~~L 206 (418)
T PF14727_consen 191 TASSSWTLECYKYQDL 206 (418)
T ss_pred EecCceeEEEecHHHh
Confidence 9998889999886544
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=94.28 E-value=2.7 Score=36.32 Aligned_cols=109 Identities=8% Similarity=0.064 Sum_probs=67.2
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccc--------EEEEEEee----------------CCCEEEEecCCCeEE
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEE--------LTSVVLMK----------------NGRKVVCGSQSGTVL 62 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~--------i~~l~~~~----------------~~~~l~~~~~d~~i~ 62 (203)
+..|+.++.++.|.-.|..+|+.+..+...... ...+++.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 457778888899999999999988877542210 12233221 234788888899999
Q ss_pred EEEcCCccccceeeecCCCCce-------------eEE-Eee--CCCEEEEEcC----------CCcEEEEEccCCceee
Q 028802 63 LYSWGYFKDCSDRFVGLSPNSV-------------DAL-LKL--DEDRVITGSE----------NGLISLVGILPNRIIQ 116 (203)
Q Consensus 63 v~d~~~~~~~~~~~~~~~~~~v-------------~~~-~~~--~~~~l~~~~~----------dg~v~v~d~~~~~~~~ 116 (203)
-.|..+. +.+..+.. .+.+ ..+ ..| .+..+++++. .|.|+-+|..+|+.+.
T Consensus 274 ALDA~TG-k~~W~fg~--~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADTG-KLCEDFGN--NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCCC-CEEEEecC--CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 9998764 44433321 1110 011 112 2345555542 6889999999998876
Q ss_pred ee
Q 028802 117 PI 118 (203)
Q Consensus 117 ~~ 118 (203)
.+
T Consensus 351 ~~ 352 (764)
T TIGR03074 351 AW 352 (764)
T ss_pred EE
Confidence 65
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.17 Score=43.41 Aligned_cols=138 Identities=16% Similarity=0.146 Sum_probs=77.3
Q ss_pred CeEEEEEcC--CCeEE-----EeecCCcccEEEEEEee---CCCEEEEecCCCeEEEEEcCCccccceeeecCCCCc---
Q 028802 17 GTLSVCNLR--KNTVQ-----TRSEFSEEELTSVVLMK---NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS--- 83 (203)
Q Consensus 17 ~~i~v~d~~--~~~~~-----~~~~~~~~~i~~l~~~~---~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~--- 83 (203)
|.+.||++. .|++. .........+.-+.|.| +.-++.++..++.+++..+.. .....+.+ |...
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~r--a~~~l~rs-Hs~~~~d 229 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINR--ALRSLFRS-HSQRVTD 229 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeech--HHHHHHHh-cCCCccc
Confidence 678899875 34322 22222233444455554 555666677788888876643 22233333 4322
Q ss_pred -------eeEE--EeeCCCEEEEEcCCCcEEEEEcc-CC----ceeeeeccCCCcceEEEEEeCC-------C--CeEEE
Q 028802 84 -------VDAL--LKLDEDRVITGSENGLISLVGIL-PN----RIIQPIAEHSEYPIESLALSHD-------R--KFLGS 140 (203)
Q Consensus 84 -------v~~~--~~~~~~~l~~~~~dg~v~v~d~~-~~----~~~~~~~~~~~~~i~~~~~~~~-------~--~~l~~ 140 (203)
+.-+ .+|||+.++.++.||.++.|.+. +| +++..+..|.+.+-.|.-++.. + .++++
T Consensus 230 ~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~It 309 (1283)
T KOG1916|consen 230 MAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRIT 309 (1283)
T ss_pred HHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEe
Confidence 2222 59999999999999999998865 22 3444555554322222223221 2 22344
Q ss_pred Ee-CCCcEEEEeCCCccc
Q 028802 141 IS-HDSMLKLWDLDDILK 157 (203)
Q Consensus 141 ~~-~d~~i~iwd~~~~~~ 157 (203)
++ .++.+++|......+
T Consensus 310 ttd~nre~k~w~~a~w~C 327 (1283)
T KOG1916|consen 310 TTDVNREEKFWAEAPWQC 327 (1283)
T ss_pred cccCCcceeEeeccchhh
Confidence 44 567789998665544
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.35 Score=24.30 Aligned_cols=31 Identities=32% Similarity=0.351 Sum_probs=23.9
Q ss_pred ccCCEEEEEc-CCCeEEEEEcCCCeEEEeecC
Q 028802 5 ADAMKLLGTS-GDGTLSVCNLRKNTVQTRSEF 35 (203)
Q Consensus 5 p~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~ 35 (203)
|++++|+++. .+++|.++|..++..+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 6788776654 578999999988887777665
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=93.91 E-value=3.6 Score=35.05 Aligned_cols=141 Identities=10% Similarity=0.020 Sum_probs=83.1
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeE------EEeecC----------------CcccEEEEEEee--CCCEEEEecCCCeEE
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNTV------QTRSEF----------------SEEELTSVVLMK--NGRKVVCGSQSGTVL 62 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~~------~~~~~~----------------~~~~i~~l~~~~--~~~~l~~~~~d~~i~ 62 (203)
.++|+++. .+.|.||++..-.. ...+.. -.-.|+.|.... +...|+.+..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 55666654 58999999864211 111100 011244443332 345788889999999
Q ss_pred EEEcCCccc-------------------cceeeecCCCCceeEE-Ee--eCCCEEEEEcCCCcEEEEEccCCcee----e
Q 028802 63 LYSWGYFKD-------------------CSDRFVGLSPNSVDAL-LK--LDEDRVITGSENGLISLVGILPNRII----Q 116 (203)
Q Consensus 63 v~d~~~~~~-------------------~~~~~~~~~~~~v~~~-~~--~~~~~l~~~~~dg~v~v~d~~~~~~~----~ 116 (203)
+|.+..--. +...+. .....+.+ ++ ...++||++++...|.||-+...... .
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~--v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~ 205 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR--VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVP 205 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee--cCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccc
Confidence 997632100 011111 23456777 66 77888888888888888765432111 1
Q ss_pred eeccCCCcceEEEEEeCCC---C---eEEEEeCCCcEEEEeC
Q 028802 117 PIAEHSEYPIESLALSHDR---K---FLGSISHDSMLKLWDL 152 (203)
Q Consensus 117 ~~~~~~~~~i~~~~~~~~~---~---~l~~~~~d~~i~iwd~ 152 (203)
... + ...|.+|+|-++. . +|++++-.|.+.+|++
T Consensus 206 s~~-~-~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 206 SHQ-H-SHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccc-c-ccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 111 2 2268889987643 2 6778888999988887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.87 E-value=2.4 Score=32.78 Aligned_cols=143 Identities=11% Similarity=0.006 Sum_probs=73.9
Q ss_pred cccccCCEEEEEcCCCeEEEE-EcCCCe-EEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 2 TFAADAMKLLGTSGDGTLSVC-NLRKNT-VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~-d~~~~~-~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
.+.|++.+++++.. |.+..- + ..++ -..........++++.+.++++.++++. .|.+.+=.. ..+........
T Consensus 179 ~~~~~g~~v~~g~~-G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~-d~G~sW~~~~~- 253 (334)
T PRK13684 179 RRSPDGKYVAVSSR-GNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDP-DDLESWSKPII- 253 (334)
T ss_pred EECCCCeEEEEeCC-ceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-CCEEEEccC-CCCCccccccC-
Confidence 34566655555543 544432 2 1111 1111223346788999999988777654 566543222 22333332221
Q ss_pred C----CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeecc--CCCcceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028802 80 S----PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAE--HSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 80 ~----~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
. ...+..+ +.|++..++ ++.+|.|. .....++.-..... ......+.+.|..+++.+++ +..|.|..|+-
T Consensus 254 ~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~~~~ 330 (334)
T PRK13684 254 PEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLRYVG 330 (334)
T ss_pred CccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCCceEEEecC
Confidence 1 1235666 677766554 45566554 33344444333322 11125777888777666554 45788877763
|
|
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=93.75 E-value=2.9 Score=33.38 Aligned_cols=30 Identities=27% Similarity=0.608 Sum_probs=25.2
Q ss_pred ceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 125 PIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 125 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
.|.+++..+..+.|++...++.|.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 488999999889999999999999999975
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.64 E-value=3 Score=37.60 Aligned_cols=139 Identities=12% Similarity=0.177 Sum_probs=79.7
Q ss_pred cCCCeEEEEEcCCCeEEEeecCCcccEEEEEEe-e-------CCCEEEEecCCCeEEEEEcCCcc--ccceee------e
Q 028802 14 SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLM-K-------NGRKVVCGSQSGTVLLYSWGYFK--DCSDRF------V 77 (203)
Q Consensus 14 ~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~-~-------~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~------~ 77 (203)
+-|+.+.+|+..++.....+.+-...|..+..- | .=+++++...--.|.++-+.... .....+ .
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 347899999999876666666655556555432 2 22344443444456665442111 111111 1
Q ss_pred cCCCCceeEE-EeeCCCEEEEEcCCCcEE--EEEccCC---c-e----------------eeeeccCCCcceEEEEEeCC
Q 028802 78 GLSPNSVDAL-LKLDEDRVITGSENGLIS--LVGILPN---R-I----------------IQPIAEHSEYPIESLALSHD 134 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~dg~v~--v~d~~~~---~-~----------------~~~~~~~~~~~i~~~~~~~~ 134 (203)
. ..-.|.++ ...+|+.+++| .||.|+ +|....+ + + +..+.+....+|..++....
T Consensus 176 ~-dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 176 V-DGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred c-CCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 2 34567777 56677666555 455443 2222221 1 1 11122122338999999888
Q ss_pred CCeEEEEeCCCcEEEEeCCC
Q 028802 135 RKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 135 ~~~l~~~~~d~~i~iwd~~~ 154 (203)
...+.+-+..++|.+|++..
T Consensus 254 R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cceeeeeccCceEEEEEccC
Confidence 88899999999999999977
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=93.57 E-value=3.4 Score=33.66 Aligned_cols=134 Identities=13% Similarity=0.049 Sum_probs=63.2
Q ss_pred CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCc---eeEE-EeeC
Q 028802 16 DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS---VDAL-LKLD 91 (203)
Q Consensus 16 d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~---v~~~-~~~~ 91 (203)
...+.++|.. |.++..+.........+...++|.+++... ..+..+|+. ++.+..... .... -..+ .-|+
T Consensus 127 ~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~--G~v~~~~~l-~~~~~~~HHD~~~l~n 200 (477)
T PF05935_consen 127 SSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL--GKVIWEYDL-PGGYYDFHHDIDELPN 200 (477)
T ss_dssp EEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT----EEEEEE---TTEE-B-S-EEE-TT
T ss_pred CceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC--CCEEEeeec-CCcccccccccEECCC
Confidence 3456666643 455555543222222256678888887665 778888875 455444443 2221 2334 5788
Q ss_pred CCEEEEEcC-------------CCcEEEEEccCCceeeeecc--C-----------------------CC-cceEEEEEe
Q 028802 92 EDRVITGSE-------------NGLISLVGILPNRIIQPIAE--H-----------------------SE-YPIESLALS 132 (203)
Q Consensus 92 ~~~l~~~~~-------------dg~v~v~d~~~~~~~~~~~~--~-----------------------~~-~~i~~~~~~ 132 (203)
|++|+.+.. .-.|..+| .+|+.+..+.. | .+ ..+.++.+.
T Consensus 201 Gn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd 279 (477)
T PF05935_consen 201 GNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYD 279 (477)
T ss_dssp S-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEE
T ss_pred CCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEe
Confidence 888887771 11244445 55554433210 0 00 147889999
Q ss_pred C-CCCeEEEEeCCCcEEEEeCCCcc
Q 028802 133 H-DRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 133 ~-~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+ ++.+|+++-.-..|...|.+++.
T Consensus 280 ~~dd~iivSsR~~s~V~~Id~~t~~ 304 (477)
T PF05935_consen 280 PSDDSIIVSSRHQSAVIKIDYRTGK 304 (477)
T ss_dssp TTTTEEEEEETTT-EEEEEE-TTS-
T ss_pred CCCCeEEEEcCcceEEEEEECCCCc
Confidence 9 55555555555678888866654
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.40 E-value=4.1 Score=34.05 Aligned_cols=143 Identities=11% Similarity=0.023 Sum_probs=75.3
Q ss_pred CCEEEEEcCC------CeEEEEEcCCCeEE--EeecCCcccEEEEEEeeCCCEEEEecCC------CeEEEEEcCCcccc
Q 028802 7 AMKLLGTSGD------GTLSVCNLRKNTVQ--TRSEFSEEELTSVVLMKNGRKVVCGSQS------GTVLLYSWGYFKDC 72 (203)
Q Consensus 7 ~~~l~~~~~d------~~i~v~d~~~~~~~--~~~~~~~~~i~~l~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~ 72 (203)
+..++.|+.. ..+..||..++.-. ..+... ..-.+++.. ++...++|+.+ ..+..||.... .
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~-r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~--~ 360 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSP-RCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTN--Q 360 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcc-cccccEEEE-CCEEEEEccccCCCcccceEEEecCCCC--c
Confidence 4566777766 35778888776332 222221 222333433 55777888888 35777887642 2
Q ss_pred ceeeecCCCCc-eeEEEeeCCCEEEEEcCCCc-----EEEEEccCCceeeeeccCCCcceEEE-EEeCCCCeEEEEeCCC
Q 028802 73 SDRFVGLSPNS-VDALLKLDEDRVITGSENGL-----ISLVGILPNRIIQPIAEHSEYPIESL-ALSHDRKFLGSISHDS 145 (203)
Q Consensus 73 ~~~~~~~~~~~-v~~~~~~~~~~l~~~~~dg~-----v~v~d~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~~~~~d~ 145 (203)
+..+....... -..+..-+|.+.++|+.+|. |-.||..+.+-...-... . +.... .-.-+|...++|+.++
T Consensus 361 W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~-~-~r~~~gv~~~~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML-T-RRSGHGVAVLGGKLYIIGGGDG 438 (571)
T ss_pred eeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCC-c-ceeeeEEEEECCEEEEEcCcCC
Confidence 43332201111 11123557888888888864 667887665432221111 1 12222 2233677777777443
Q ss_pred ------cEEEEeCCCc
Q 028802 146 ------MLKLWDLDDI 155 (203)
Q Consensus 146 ------~i~iwd~~~~ 155 (203)
.+..||..+.
T Consensus 439 ~~~~l~sve~YDP~t~ 454 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETN 454 (571)
T ss_pred CccccceEEEEcCCCC
Confidence 4667776654
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.72 Score=31.88 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=22.2
Q ss_pred cEEEEEEeeCC------CEEEEecCCCeEEEEEcC
Q 028802 39 ELTSVVLMKNG------RKVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 39 ~i~~l~~~~~~------~~l~~~~~d~~i~v~d~~ 67 (203)
.+..++|||.| -+|++.+.++.|.+|.-.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 67888899854 367788888888888754
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=93.16 E-value=1.6 Score=35.97 Aligned_cols=108 Identities=10% Similarity=0.015 Sum_probs=63.9
Q ss_pred CcccccC----CEEEEEcCCCeEEEEEcCC-----CeEEEeecCC---cc--cEEEEEEeeCCCEEEEecCCCeEEEEEc
Q 028802 1 MTFAADA----MKLLGTSGDGTLSVCNLRK-----NTVQTRSEFS---EE--ELTSVVLMKNGRKVVCGSQSGTVLLYSW 66 (203)
Q Consensus 1 l~~sp~~----~~l~~~~~d~~i~v~d~~~-----~~~~~~~~~~---~~--~i~~l~~~~~~~~l~~~~~d~~i~v~d~ 66 (203)
+.|.|-+ ..|++.-....|.||-+.. ++.+..-..+ .- -...+.|+|....|++-.....-.++++
T Consensus 62 lsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV 141 (671)
T PF15390_consen 62 LSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSV 141 (671)
T ss_pred eeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeee
Confidence 4577642 2343444558899998752 2222221111 11 1245779999888887766555566677
Q ss_pred CCccccceeeecCCCCceeEE-EeeCCCEEEEEcCC-CcEEEEEc
Q 028802 67 GYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSEN-GLISLVGI 109 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d-g~v~v~d~ 109 (203)
+.....++.-.. ..+-|.|. |.+||+.++++-.. -.-++||-
T Consensus 142 ~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 142 HCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred eeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 643333332223 56778888 99999988876543 34568884
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=93.14 E-value=4.2 Score=35.27 Aligned_cols=115 Identities=10% Similarity=0.033 Sum_probs=68.5
Q ss_pred cccEEEEEEee-CCCEEEEecCCCeEEEEEcCCc----cccceeeecCCCC----------ceeEE-EeeCCCEEEEEcC
Q 028802 37 EEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYF----KDCSDRFVGLSPN----------SVDAL-LKLDEDRVITGSE 100 (203)
Q Consensus 37 ~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d~~~~----~~~~~~~~~~~~~----------~v~~~-~~~~~~~l~~~~~ 100 (203)
..+...++|+| +...|++....|...||++... ...+..... ..+ ....+ |.++.+.|++++.
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~-~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r 223 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRN-ISGSIIFDPEELSNWKRILWVSDSNRLLVCNR 223 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccC-CCccccCCCcccCcceeeEecCCCCEEEEEcC
Confidence 45677899998 4568999999999999999211 011111111 111 12244 7677777777665
Q ss_pred CCcEEEEEccCCceee-eeccCCCcceEEEEEeCCCC-eEEEEeCCCcEEEEeCCC
Q 028802 101 NGLISLVGILPNRIIQ-PIAEHSEYPIESLALSHDRK-FLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 101 dg~v~v~d~~~~~~~~-~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~ 154 (203)
. .+.++|+.+..... .....+...|..+.-+|... +++.. +...|...++..
T Consensus 224 ~-~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 224 S-KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKS 277 (765)
T ss_pred C-ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccC
Confidence 4 57889998775533 23332233788888877632 22222 335677777666
|
These proteins are found in fungi. |
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=92.92 E-value=2 Score=35.57 Aligned_cols=72 Identities=17% Similarity=0.173 Sum_probs=42.6
Q ss_pred eCCCEEEEecCCCeEEEEEcCC---ccccceee-----------ecC---C-------CCceeEE-Eee----CCCEEEE
Q 028802 47 KNGRKVVCGSQSGTVLLYSWGY---FKDCSDRF-----------VGL---S-------PNSVDAL-LKL----DEDRVIT 97 (203)
Q Consensus 47 ~~~~~l~~~~~d~~i~v~d~~~---~~~~~~~~-----------~~~---~-------~~~v~~~-~~~----~~~~l~~ 97 (203)
++...++++..+|.+....... .+..+... .+. . ......+ .++ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3677888888899888887753 11111111 000 0 1122333 444 6788999
Q ss_pred EcCCCcEEEEEccCCceeeee
Q 028802 98 GSENGLISLVGILPNRIIQPI 118 (203)
Q Consensus 98 ~~~dg~v~v~d~~~~~~~~~~ 118 (203)
.+.|+.+++||+.+++++.+.
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999885543
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=92.87 E-value=3 Score=30.98 Aligned_cols=123 Identities=11% Similarity=-0.030 Sum_probs=71.9
Q ss_pred EEEeecCCcc-cEEEEEEeeCCCEEEEecCCC--eEEEEEcCCccccceeeecCCCCceeEE-Eee-CCCEEEEEcCCCc
Q 028802 29 VQTRSEFSEE-ELTSVVLMKNGRKVVCGSQSG--TVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKL-DEDRVITGSENGL 103 (203)
Q Consensus 29 ~~~~~~~~~~-~i~~l~~~~~~~~l~~~~~d~--~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~dg~ 103 (203)
.+.++..... -...+.|..++.++-+.+.-| .|+.+|+.+ ++......- ......= ... +.+.....-.++.
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~t-g~~~~~~~l--~~~~FgEGit~~~d~l~qLTWk~~~ 111 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLET-GKVLQSVPL--PPRYFGEGITILGDKLYQLTWKEGT 111 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTT-SSEEEEEE---TTT--EEEEEEETTEEEEEESSSSE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCC-CcEEEEEEC--CccccceeEEEECCEEEEEEecCCe
Confidence 3444443233 345677878888888877765 688888875 344433322 1222211 222 3334444456889
Q ss_pred EEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 104 ISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 104 v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
..+||..+.+.+.++....+ =+.++ .++..|+.......|+++|..+....
T Consensus 112 ~f~yd~~tl~~~~~~~y~~E--GWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~ 162 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFPYPGE--GWGLT--SDGKRLIMSDGSSRLYFLDPETFKEV 162 (264)
T ss_dssp EEEEETTTTEEEEEEE-SSS----EEE--ECSSCEEEE-SSSEEEEE-TTT-SEE
T ss_pred EEEEccccceEEEEEecCCc--ceEEE--cCCCEEEEECCccceEEECCcccceE
Confidence 99999999888888866533 35555 56777777777789999998877543
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.60 E-value=3.1 Score=33.97 Aligned_cols=73 Identities=12% Similarity=0.137 Sum_probs=48.3
Q ss_pred eeEE-EeeCCCEEEEEcCCCcEEEEEc---------cCCceeeeec----------cCCCcceEEEEEeCCC---CeEEE
Q 028802 84 VDAL-LKLDEDRVITGSENGLISLVGI---------LPNRIIQPIA----------EHSEYPIESLALSHDR---KFLGS 140 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~dg~v~v~d~---------~~~~~~~~~~----------~~~~~~i~~~~~~~~~---~~l~~ 140 (203)
|..+ .++.|..++.++.+|.+.++=. +.|+..-+.+ ..+.-.+..++|+|+. .+|+.
T Consensus 106 V~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~i 185 (741)
T KOG4460|consen 106 VYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVL 185 (741)
T ss_pred EEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEE
Confidence 4455 6889999999999987654421 2333221111 1111146778999975 67888
Q ss_pred EeCCCcEEEEeCCCcc
Q 028802 141 ISHDSMLKLWDLDDIL 156 (203)
Q Consensus 141 ~~~d~~i~iwd~~~~~ 156 (203)
...|..|++|++....
T Consensus 186 L~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 186 LTSDNVIRIYSLSEPT 201 (741)
T ss_pred EecCcEEEEEecCCcc
Confidence 8899999999987654
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=92.54 E-value=3.1 Score=32.11 Aligned_cols=46 Identities=17% Similarity=0.300 Sum_probs=30.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeE---EEee----cCCcccEEEEEEeeC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV---QTRS----EFSEEELTSVVLMKN 48 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~---~~~~----~~~~~~i~~l~~~~~ 48 (203)
|+|.|+|+++++ ...|.|++++ ..+.. +..+ ......+..++++|+
T Consensus 7 ~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 7 MAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp EEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred EEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence 579999877665 5589999999 43332 2222 234567899999994
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=92.45 E-value=2.4 Score=29.30 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=25.6
Q ss_pred ceEEEEEeCCC-----C-eEEEEeCCCcEEEEeCCCcc
Q 028802 125 PIESLALSHDR-----K-FLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 125 ~i~~~~~~~~~-----~-~l~~~~~d~~i~iwd~~~~~ 156 (203)
.+.+++|||-| + .|++.+.++.|.||......
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~~ 124 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGNP 124 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCCc
Confidence 68899999944 2 57788899999999977543
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.79 Score=22.94 Aligned_cols=40 Identities=15% Similarity=0.206 Sum_probs=27.3
Q ss_pred eCCCEEEEEcC-CCcEEEEEccCCceeeeeccCCCcceEEEEE
Q 028802 90 LDEDRVITGSE-NGLISLVGILPNRIIQPIAEHSEYPIESLAL 131 (203)
Q Consensus 90 ~~~~~l~~~~~-dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~ 131 (203)
|+++.+++++. ++.|.++|..+++.+..+... . ....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~-~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-G-YPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-C-CCceEEe
Confidence 56777776654 788999999888887777654 2 2344554
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=92.26 E-value=0.77 Score=22.75 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=18.3
Q ss_pred ceEEEEEeCCCCeEEEEe-CC--CcEEEE
Q 028802 125 PIESLALSHDRKFLGSIS-HD--SMLKLW 150 (203)
Q Consensus 125 ~i~~~~~~~~~~~l~~~~-~d--~~i~iw 150 (203)
.-....|+|||++|+.++ .+ |...||
T Consensus 10 ~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 567889999999987665 44 555555
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.74 Score=22.80 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=19.8
Q ss_pred cCCcccEEEEEEeeCCCEEEEecC-C--CeEEEE
Q 028802 34 EFSEEELTSVVLMKNGRKVVCGSQ-S--GTVLLY 64 (203)
Q Consensus 34 ~~~~~~i~~l~~~~~~~~l~~~~~-d--~~i~v~ 64 (203)
...........|+|||+.|+.++. + |...||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 334456778899999998886654 4 555444
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=92.03 E-value=1.2 Score=36.92 Aligned_cols=68 Identities=22% Similarity=0.271 Sum_probs=41.6
Q ss_pred eCCCEEEEEcCCCcEEEEEccC----Cceeeee-----------ccC----------CCcceEEEEEeC----CCCeEEE
Q 028802 90 LDEDRVITGSENGLISLVGILP----NRIIQPI-----------AEH----------SEYPIESLALSH----DRKFLGS 140 (203)
Q Consensus 90 ~~~~~l~~~~~dg~v~v~d~~~----~~~~~~~-----------~~~----------~~~~i~~~~~~~----~~~~l~~ 140 (203)
++...++.+..+|.+....... +...... .+- .......+++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3777888888888887776653 2111110 000 011345566666 6789999
Q ss_pred EeCCCcEEEEeCCCccc
Q 028802 141 ISHDSMLKLWDLDDILK 157 (203)
Q Consensus 141 ~~~d~~i~iwd~~~~~~ 157 (203)
.+.|+.|++||+.++.+
T Consensus 236 l~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQC 252 (547)
T ss_dssp EETTSEEEEEETTTTCE
T ss_pred EeCCCeEEEEECCCCeE
Confidence 99999999999999887
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=91.95 E-value=4.6 Score=34.43 Aligned_cols=101 Identities=12% Similarity=0.106 Sum_probs=65.0
Q ss_pred CCEEEEEcCCCeEEEEEcCC-------C----e---------EEEeecCCcccEEEEEEe--eCCCEEEEecCCCeEEEE
Q 028802 7 AMKLLGTSGDGTLSVCNLRK-------N----T---------VQTRSEFSEEELTSVVLM--KNGRKVVCGSQSGTVLLY 64 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~-------~----~---------~~~~~~~~~~~i~~l~~~--~~~~~l~~~~~d~~i~v~ 64 (203)
...|+.+..||.|.+|.+.+ . . +...+. ....+++++++ ...++||+++....|.||
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 45788889999999997631 0 0 011111 24568999998 778899999888888888
Q ss_pred EcCCccc--cceeeecCCCCceeEE-Eee-----CCC-EEEEEcCCCcEEEEEc
Q 028802 65 SWGYFKD--CSDRFVGLSPNSVDAL-LKL-----DED-RVITGSENGLISLVGI 109 (203)
Q Consensus 65 d~~~~~~--~~~~~~~~~~~~v~~~-~~~-----~~~-~l~~~~~dg~v~v~d~ 109 (203)
-+..... ....-.. +...|-++ |-+ .|. .+++++..|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~~-~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQ-HSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccc-cccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 6653211 1111112 45566667 533 233 6778888999998887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.87 E-value=1.2 Score=32.45 Aligned_cols=46 Identities=13% Similarity=0.171 Sum_probs=38.3
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEee
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK 47 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~ 47 (203)
+...+|++.+++-..++|...|..+|+.+..+.-+..+|++++|--
T Consensus 218 ~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 218 TIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred eEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 3445677777777778999999999999999988899999999964
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=91.66 E-value=8.4 Score=33.46 Aligned_cols=154 Identities=10% Similarity=-0.021 Sum_probs=87.4
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccE-------------EEEEEee--CCCEEEEecC----------CCeE
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEEL-------------TSVVLMK--NGRKVVCGSQ----------SGTV 61 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i-------------~~l~~~~--~~~~l~~~~~----------d~~i 61 (203)
+..|+.++.|+.|.-.|..+|+....+... +.+ ..+.-.| .+..+++++. .|.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 457888889999999999999888765321 111 0111111 1345555532 5789
Q ss_pred EEEEcCCccccceeeec---------------CCCCceeEE--EeeCCCEEEEEc------------------CCCcEEE
Q 028802 62 LLYSWGYFKDCSDRFVG---------------LSPNSVDAL--LKLDEDRVITGS------------------ENGLISL 106 (203)
Q Consensus 62 ~v~d~~~~~~~~~~~~~---------------~~~~~v~~~--~~~~~~~l~~~~------------------~dg~v~v 106 (203)
+-+|..+.......-.. .....++.. +.+...+++.+. ..+.|.-
T Consensus 339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvA 418 (764)
T TIGR03074 339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVA 418 (764)
T ss_pred EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEE
Confidence 99999764333221110 001122222 344444444322 1245777
Q ss_pred EEccCCceeeeecc-CCC-------cceEEEEEeC-CCC---eEEEEeCCCcEEEEeCCCcccCCCC
Q 028802 107 VGILPNRIIQPIAE-HSE-------YPIESLALSH-DRK---FLGSISHDSMLKLWDLDDILKGSGN 161 (203)
Q Consensus 107 ~d~~~~~~~~~~~~-~~~-------~~i~~~~~~~-~~~---~l~~~~~d~~i~iwd~~~~~~~~~~ 161 (203)
.|+.+|+....++. |.+ ....-+.+.. +|+ .++.++.+|.++++|-++++..-..
T Consensus 419 LD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 419 LDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred EeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 88889998877754 221 0111122332 553 6788889999999999998765443
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=91.56 E-value=4.6 Score=30.26 Aligned_cols=149 Identities=11% Similarity=-0.012 Sum_probs=88.7
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec--C
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG--L 79 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~ 79 (203)
+-+|||..-+++...+.|--.|..+|+....-.+.......|..-||+..-++-+.. -|.-+|-++ ..+..|.- .
T Consensus 68 apapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt--~evt~f~lp~~ 144 (353)
T COG4257 68 APAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKT--LEVTRFPLPLE 144 (353)
T ss_pred ccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcc--cceEEeecccc
Confidence 445677777777777777777777777655444555566777788888766654333 344444432 12222221 0
Q ss_pred -CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 80 -SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 80 -~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
........ |.+.|++.+++... .---.|.. ...+.++....+..-+.|+-.|+|...++.-.+..|-..|..++
T Consensus 145 ~a~~nlet~vfD~~G~lWFt~q~G-~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~ 220 (353)
T COG4257 145 HADANLETAVFDPWGNLWFTGQIG-AYGRLDPA-RNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAG 220 (353)
T ss_pred cCCCcccceeeCCCccEEEeeccc-cceecCcc-cCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccC
Confidence 12334444 89999988887632 11111221 23344554443445678889999988777777778887777665
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=91.49 E-value=6 Score=31.45 Aligned_cols=108 Identities=8% Similarity=0.011 Sum_probs=58.5
Q ss_pred cccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc-----ceeeecC-CCCceeEE-EeeCCCEEEEEcCCCcEEEEEc
Q 028802 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC-----SDRFVGL-SPNSVDAL-LKLDEDRVITGSENGLISLVGI 109 (203)
Q Consensus 37 ~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~-----~~~~~~~-~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~ 109 (203)
...+..+.+.+++..++++ ..|.+..-. . .+.. ....... ....+..+ +.+++..+ .++..|.+....
T Consensus 280 ~~~l~~v~~~~dg~l~l~g-~~G~l~~S~-d-~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~-a~G~~G~v~~s~- 354 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLT-RGGGLYVSK-G-TGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAW-AAGGSGILLRST- 354 (398)
T ss_pred ccceeeeeEcCCCCEEEEe-CCceEEEec-C-CCCcccccceeecccCCCCcceEEEEEcCCCcEE-EEECCCcEEEeC-
Confidence 4568899999998887766 455544322 1 1221 1222110 11236667 66666554 555667665443
Q ss_pred cCCceeeeeccCC--CcceEEEEEeCCCCeEEEEeCCCcEEEE
Q 028802 110 LPNRIIQPIAEHS--EYPIESLALSHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 110 ~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~iw 150 (203)
..|+.-....... ....+.+.|.++++-+++| .+|.|.-|
T Consensus 355 D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 355 DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 3444433332111 1268889988776665555 57777655
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=91.46 E-value=6.2 Score=31.51 Aligned_cols=57 Identities=9% Similarity=0.078 Sum_probs=40.4
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCe
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF 137 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 137 (203)
.+++..+ .||++++++.-..+|.+.+....-.+.+..+..........|.|..+...
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav 273 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAV 273 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcE
Confidence 3567777 89999999999999999988765555555554442335667777766443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=91.04 E-value=7.2 Score=31.55 Aligned_cols=49 Identities=12% Similarity=0.101 Sum_probs=32.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe--EEEeec-----CCcccEEEEEEeeCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSE-----FSEEELTSVVLMKNG 49 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~-----~~~~~i~~l~~~~~~ 49 (203)
|+|.|+|++|++--..|.|++++..++. .+..+. .....+..|+++|+-
T Consensus 35 maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 35 LLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 5789999877765446999999865442 222121 135678999999874
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=90.97 E-value=6.1 Score=30.56 Aligned_cols=108 Identities=12% Similarity=0.082 Sum_probs=58.5
Q ss_pred cccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCcee
Q 028802 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRII 115 (203)
Q Consensus 37 ~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~ 115 (203)
...+..+.+.|++.+++++. .|.+..- ....+.............+..+ +.+++..++++ ..|.+++-....|..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 34678888888887666654 4544431 1112233333332134556777 78888876665 4576643223333322
Q ss_pred eeeccC---CCcceEEEEEeCCCCeEEEEeCCCcEE
Q 028802 116 QPIAEH---SEYPIESLALSHDRKFLGSISHDSMLK 148 (203)
Q Consensus 116 ~~~~~~---~~~~i~~~~~~~~~~~l~~~~~d~~i~ 148 (203)
.....+ ....+..+.+.|++..+++ +.+|.|.
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~ 283 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLL 283 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEEE-cCCCeEE
Confidence 221111 1225788899998775554 4566554
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=90.86 E-value=3.3 Score=27.30 Aligned_cols=109 Identities=18% Similarity=0.132 Sum_probs=60.7
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCe--------EEEeecCCcccEEEEEEee-----CCCEEEEecCCCeEEEEEcCCc
Q 028802 3 FAADAMKLLGTSGDGTLSVCNLRKNT--------VQTRSEFSEEELTSVVLMK-----NGRKVVCGSQSGTVLLYSWGYF 69 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~v~d~~~~~--------~~~~~~~~~~~i~~l~~~~-----~~~~l~~~~~d~~i~v~d~~~~ 69 (203)
|......|+.++.-|.|.|.+..... .+..+. -...|++|+-.+ ....|+.|+. ..+..||+...
T Consensus 6 fDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N 83 (136)
T PF14781_consen 6 FDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENN 83 (136)
T ss_pred eCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccC
Confidence 45556678888888999999876321 223332 245577776544 2356666664 67999999754
Q ss_pred cccceeeecCCCCceeEE-E---ee-CCCEEEEEcCCCcEEEEEccCCceeee
Q 028802 70 KDCSDRFVGLSPNSVDAL-L---KL-DEDRVITGSENGLISLVGILPNRIIQP 117 (203)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~-~---~~-~~~~l~~~~~dg~v~v~d~~~~~~~~~ 117 (203)
..... +. -...+.++ + .. ..++++ .+.+..|+-||..-.+...+
T Consensus 84 ~d~Fy--ke-~~DGvn~i~~g~~~~~~~~l~i-vGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 84 SDLFY--KE-VPDGVNAIVIGKLGDIPSPLVI-VGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred chhhh--hh-CccceeEEEEEecCCCCCcEEE-ECceEEEEEeCCCCcEEEEE
Confidence 33322 11 23445555 3 22 233444 44445666666543333333
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=90.59 E-value=2.9 Score=36.42 Aligned_cols=62 Identities=13% Similarity=0.110 Sum_probs=41.6
Q ss_pred CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEE-ecCCC-----eEEEEEcCCccccceeee
Q 028802 16 DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSG-----TVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 16 d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-~~~d~-----~i~v~d~~~~~~~~~~~~ 77 (203)
.+.|.+-|.........-..+..+|.+.+|||||++|+. .+..+ .|++-++.+.+.-+-.+.
T Consensus 328 ~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ 395 (912)
T TIGR02171 328 TGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLP 395 (912)
T ss_pred CCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEee
Confidence 358888888765544331345778999999999999987 44333 588888876554433333
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=90.36 E-value=8.7 Score=31.35 Aligned_cols=103 Identities=11% Similarity=-0.039 Sum_probs=51.0
Q ss_pred CCEEEEEcCC-----CeEEEEEcCCCeEEE--eecCCcccEEEEEEeeCCCEEEEecCC--CeEEEEEcCCccccceeee
Q 028802 7 AMKLLGTSGD-----GTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQS--GTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 7 ~~~l~~~~~d-----~~i~v~d~~~~~~~~--~~~~~~~~i~~l~~~~~~~~l~~~~~d--~~i~v~d~~~~~~~~~~~~ 77 (203)
+..+++|+.+ ..+..||..++.-.. .+....... ++ ..-++...+.|+.+ ..+..||... ..+..+.
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~-v~~~~~iYviGG~~~~~sve~ydp~~--n~W~~~~ 347 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SG-VPANNKLYVVGGLPNPTSVERWFHGD--AAWVNMP 347 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eE-EEECCEEEEECCcCCCCceEEEECCC--CeEEECC
Confidence 3345666643 356778877654322 222111111 22 23466777777753 3577787642 2233222
Q ss_pred cCCCCce--eEEEeeCCCEEEEEcCCC---cEEEEEccCCce
Q 028802 78 GLSPNSV--DALLKLDEDRVITGSENG---LISLVGILPNRI 114 (203)
Q Consensus 78 ~~~~~~v--~~~~~~~~~~l~~~~~dg---~v~v~d~~~~~~ 114 (203)
. -..+. .++..-+|+..+.|+.++ .+..||..+.+-
T Consensus 348 ~-l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W 388 (480)
T PHA02790 348 S-LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQW 388 (480)
T ss_pred C-CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEE
Confidence 2 11111 112344677777777543 466788776543
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=90.11 E-value=7.3 Score=30.07 Aligned_cols=103 Identities=12% Similarity=0.144 Sum_probs=50.7
Q ss_pred cEEEEEEeeCCCEEEEecCCCeEEEEEcCCcc-ccceee----ecCCCCceeEE-EeeC---CCEEEEEcC-C-------
Q 028802 39 ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-DCSDRF----VGLSPNSVDAL-LKLD---EDRVITGSE-N------- 101 (203)
Q Consensus 39 ~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~----~~~~~~~v~~~-~~~~---~~~l~~~~~-d------- 101 (203)
..+.|+|.|+++++++ ...|.|.+++..... ..+..+ .. ....+..+ ++|+ ..+|++... .
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~-~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFAD-GERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTS-TTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceeccccccccc-ccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999987775 459999999832211 111111 11 23445666 7774 334443332 1
Q ss_pred -CcEEEEEccCC-------cee-eeecc--CCCcceEEEEEeCCCCeEEEEeC
Q 028802 102 -GLISLVGILPN-------RII-QPIAE--HSEYPIESLALSHDRKFLGSISH 143 (203)
Q Consensus 102 -g~v~v~d~~~~-------~~~-~~~~~--~~~~~i~~~~~~~~~~~l~~~~~ 143 (203)
..|.-|....+ +.+ ..+.. ........|+|.|||.+.++.+.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 13433444332 111 11222 11114567999999966665553
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=90.07 E-value=5.5 Score=28.58 Aligned_cols=49 Identities=12% Similarity=0.111 Sum_probs=36.7
Q ss_pred CEEEEEcCCCeEEEEEcCC--CeEEEeecCCcccEEEEEEeeCCCEEEEecC
Q 028802 8 MKLLGTSGDGTLSVCNLRK--NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ 57 (203)
Q Consensus 8 ~~l~~~~~d~~i~v~d~~~--~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~ 57 (203)
..|+.+.....|.+|++.+ .+++..+..- ++|..+.++..|.+|++--.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEe
Confidence 4555545667899999883 3556667653 78999999999999998543
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=90.04 E-value=7.8 Score=30.31 Aligned_cols=146 Identities=12% Similarity=0.066 Sum_probs=78.3
Q ss_pred EEEEEcCCCeEEEEEcCCCeEEEeecCCc--ccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCC-cee
Q 028802 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSE--EELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN-SVD 85 (203)
Q Consensus 9 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~--~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~-~v~ 85 (203)
.++++..+|.|.-.|..++..+....... ..+..-.+..+|+ ++.++.++.++.+|..+ +..+-.... ... .+.
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~-G~~~W~~~~-~~~~~~~ 146 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDAST-GTLVWSRNV-GGSPYYA 146 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCC-CcEEEEEec-CCCeEEe
Confidence 45555778888888988887665444321 2333333444665 77778888888888854 444434433 221 011
Q ss_pred EEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC--CcceEEEEEeCCCCeEEEEeC--CCcEEEEeCCCcccC
Q 028802 86 ALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS--EYPIESLALSHDRKFLGSISH--DSMLKLWDLDDILKG 158 (203)
Q Consensus 86 ~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~ 158 (203)
...-.....++.++.++.+...+..+|..+....... ...+..-....+ ..++.+.. ++.+.-+++.++...
T Consensus 147 ~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~vy~~~~~~~~~~~a~~~~~G~~~ 222 (370)
T COG1520 147 SPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIAS-GTVYVGSDGYDGILYALNAEDGTLK 222 (370)
T ss_pred cCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeec-ceEEEecCCCcceEEEEEccCCcEe
Confidence 1111123344444477888888888888766644321 111111111122 33344443 556777777666544
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.88 E-value=2.8 Score=33.61 Aligned_cols=96 Identities=11% Similarity=0.119 Sum_probs=59.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEE----EeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ----TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~----~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 76 (203)
+.||+|.+.||+--.+.+|.+++....+.. .+.+.....|....|+.+ .-++..+..| +.+|-+......++..
T Consensus 72 IkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlV 149 (657)
T KOG2377|consen 72 IKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLV 149 (657)
T ss_pred EEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhh
Confidence 469999999999999999999998543322 222333456888899865 4455444434 6666664444445544
Q ss_pred ecCCCCce-eEEEeeCCCEEEEEc
Q 028802 77 VGLSPNSV-DALLKLDEDRVITGS 99 (203)
Q Consensus 77 ~~~~~~~v-~~~~~~~~~~l~~~~ 99 (203)
+. +...| +-+|.++.+.++.++
T Consensus 150 ks-~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 150 KS-HNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred hh-cccCccEEEEccccceEeeec
Confidence 44 44443 333666666555443
|
|
| >smart00564 PQQ beta-propeller repeat | Back alignment and domain information |
|---|
Probab=89.84 E-value=1.3 Score=20.87 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=20.7
Q ss_pred EEEEEcCCCeEEEEEcCCCeEEEee
Q 028802 9 KLLGTSGDGTLSVCNLRKNTVQTRS 33 (203)
Q Consensus 9 ~l~~~~~d~~i~v~d~~~~~~~~~~ 33 (203)
.+++++.++.+..+|..+|+.+..+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 6777888999999999988877653
|
Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.21 E-value=0.49 Score=40.74 Aligned_cols=108 Identities=13% Similarity=0.098 Sum_probs=61.9
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEE-----------EEeeCCCEEEEecCCCeEEEEEcCCcc----
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSV-----------VLMKNGRKVVCGSQSGTVLLYSWGYFK---- 70 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l-----------~~~~~~~~l~~~~~d~~i~v~d~~~~~---- 70 (203)
+.-++.++-.+++|++..+.+... ..+..|..++..+ ..+|||..|+..+.||.++.|.+...+
T Consensus 194 ~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~ 272 (1283)
T KOG1916|consen 194 NKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVH 272 (1283)
T ss_pred ccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccH
Confidence 455677777888888877654321 2233344433322 268999999999999998888764332
Q ss_pred ccceeeecCCCCc-eeEE-EeeCC---------CEEEEEc-CCCcEEEEEccCCcee
Q 028802 71 DCSDRFVGLSPNS-VDAL-LKLDE---------DRVITGS-ENGLISLVGILPNRII 115 (203)
Q Consensus 71 ~~~~~~~~~~~~~-v~~~-~~~~~---------~~l~~~~-~dg~v~v~d~~~~~~~ 115 (203)
.++...+. |... -.|. |+... .++++++ ..+-+++|....-+|+
T Consensus 273 rclhewkp-hd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 273 RCLHEWKP-HDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred hhhhccCC-CCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 33444455 5532 2222 32221 1233333 3455888876655555
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=88.92 E-value=9.7 Score=29.84 Aligned_cols=102 Identities=16% Similarity=0.153 Sum_probs=52.4
Q ss_pred ccEEEEEEeeCCCEEEEec-----------CCC-eEEEEEcCC-cccc--ceeeecCCCCceeEE-EeeCCCEEEEEcCC
Q 028802 38 EELTSVVLMKNGRKVVCGS-----------QSG-TVLLYSWGY-FKDC--SDRFVGLSPNSVDAL-LKLDEDRVITGSEN 101 (203)
Q Consensus 38 ~~i~~l~~~~~~~~l~~~~-----------~d~-~i~v~d~~~-~~~~--~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d 101 (203)
.....|+|.++|+++++.. ..+ .|.+++-.. .+.. ...+.. .......+ +.+++ +++++..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~-~l~~p~Gi~~~~~G--lyV~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE-ELSMVTGLAVAVGG--VYVATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec-CCCCccceeEecCC--EEEeCCC
Confidence 3456789999999877753 223 676665422 2221 233333 33344566 67777 4444444
Q ss_pred CcEEEEEccC-C----c--ee-eeeccC---CCcceEEEEEeCCCCeEEEEe
Q 028802 102 GLISLVGILP-N----R--II-QPIAEH---SEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 102 g~v~v~d~~~-~----~--~~-~~~~~~---~~~~i~~~~~~~~~~~l~~~~ 142 (203)
...++.+... + + .+ ..+... .......++|.|||.+.++.+
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 3333334421 1 1 11 112211 011467899999998766544
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF01011 PQQ: PQQ enzyme repeat family | Back alignment and domain information |
|---|
Probab=88.46 E-value=1.8 Score=21.42 Aligned_cols=28 Identities=14% Similarity=0.330 Sum_probs=23.3
Q ss_pred EEEEEcCCCcEEEEEccCCceeeeeccC
Q 028802 94 RVITGSENGLISLVGILPNRIIQPIAEH 121 (203)
Q Consensus 94 ~l~~~~~dg~v~v~d~~~~~~~~~~~~~ 121 (203)
.+++++.+|.|+-+|..+|+.+..+...
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence 4566789999999999999999877654
|
; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A .... |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.41 E-value=9.3 Score=29.00 Aligned_cols=143 Identities=8% Similarity=0.020 Sum_probs=82.3
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeE---EEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce--eeecCCC
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNTV---QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD--RFVGLSP 81 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~ 81 (203)
+++.+.+..+.-++|.|+.+... +..+.. .+--. .|.-.|++..++..+.-+.+.|+.....+.- .... ..
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gyay--gv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~-~~ 171 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNT-DGYAY--GVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYAL-PG 171 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcceeccccC-CceEE--EEEecCCEEEEeeccCcEEEEECCCCCCceeeeeecc-CC
Confidence 45666777778899999986532 222222 12122 3445688999888666677889875433321 1221 22
Q ss_pred CceeEEEeeCCCEEEEEcCCCcEEEEEccCC-ceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 82 NSVDALLKLDEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 82 ~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
.....+ .-.|++.+.++.++-+.+.|+... .+...-....+..++++..+++--+++.. +.-+.+-|..+..
T Consensus 172 ~d~~~v-~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--~egvlivd~s~~s 244 (370)
T COG5276 172 GDTHDV-AISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--DEGVLIVDVSGPS 244 (370)
T ss_pred CCceeE-EEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc--ccceEEEecCCCC
Confidence 222222 346778888889999999998643 22211111112257777777775555544 4456666766554
|
|
| >PF01011 PQQ: PQQ enzyme repeat family | Back alignment and domain information |
|---|
Probab=88.36 E-value=1.9 Score=21.27 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=22.8
Q ss_pred EEEEEcCCCeEEEEEcCCCeEEEeecC
Q 028802 9 KLLGTSGDGTLSVCNLRKNTVQTRSEF 35 (203)
Q Consensus 9 ~l~~~~~d~~i~v~d~~~~~~~~~~~~ 35 (203)
.++.++.+|.|+-.|..+|+.+..+..
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 466678999999999999999887764
|
; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A .... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.28 E-value=16 Score=31.43 Aligned_cols=47 Identities=19% Similarity=0.368 Sum_probs=33.7
Q ss_pred EEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcC
Q 028802 19 LSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 19 i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~ 67 (203)
|+||++. |+++..+......+..+.|+.+. .|++...+|++++|++.
T Consensus 66 I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ 112 (829)
T KOG2280|consen 66 IRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLL 112 (829)
T ss_pred EEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecc
Confidence 6666653 55555555445578899998654 56667889999999985
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=87.67 E-value=17 Score=31.24 Aligned_cols=148 Identities=11% Similarity=0.004 Sum_probs=70.0
Q ss_pred CcccccCCEEEEEcCC------CeEEEEEcCCC--eEEEeecCCcccEE-EEEEeeCCCEEEEecC---CCeEEEEEcCC
Q 028802 1 MTFAADAMKLLGTSGD------GTLSVCNLRKN--TVQTRSEFSEEELT-SVVLMKNGRKVVCGSQ---SGTVLLYSWGY 68 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d------~~i~v~d~~~~--~~~~~~~~~~~~i~-~l~~~~~~~~l~~~~~---d~~i~v~d~~~ 68 (203)
++|++|++.|+.+..+ ..|+.+++.++ +....+........ .+..+.++.+++..+. ++.+.+++...
T Consensus 177 ~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~ 256 (686)
T PRK10115 177 FVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAEL 256 (686)
T ss_pred EEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcC
Confidence 4789999877665432 46888888877 33333433223333 2233337777654433 45788888532
Q ss_pred c-cccceeeecCCCCceeEEEeeCCCEEEEEcCC----CcEEEEEcc-CCceeeeeccCCCcceEEEEEeCCCCeEEEEe
Q 028802 69 F-KDCSDRFVGLSPNSVDALLKLDEDRVITGSEN----GLISLVGIL-PNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 69 ~-~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d----g~v~v~d~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 142 (203)
. ......+.. .......+.+.. ..++..+.. ..|...++. +++....+.......|..+.+. .+..+++..
T Consensus 257 ~~~~~~~~~~~-~~~~~~~~~~~~-~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~ 333 (686)
T PRK10115 257 ADAEPFVFLPR-RKDHEYSLDHYQ-HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEER 333 (686)
T ss_pred CCCCceEEEEC-CCCCEEEEEeCC-CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEE
Confidence 1 222222222 222222223323 333333322 234444444 2222222322223357777776 223444555
Q ss_pred CCCcEEEEe
Q 028802 143 HDSMLKLWD 151 (203)
Q Consensus 143 ~d~~i~iwd 151 (203)
.++.-+++-
T Consensus 334 ~~g~~~l~~ 342 (686)
T PRK10115 334 QRGLTSLRQ 342 (686)
T ss_pred eCCEEEEEE
Confidence 566544443
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=87.40 E-value=11 Score=28.78 Aligned_cols=65 Identities=15% Similarity=0.127 Sum_probs=34.4
Q ss_pred CCCEEEEecC-----CCeEEEEEcCCccccceeeecCC-CCceeEE-EeeCCCEEEEEcCCC----cEEEEEccCCce
Q 028802 48 NGRKVVCGSQ-----SGTVLLYSWGYFKDCSDRFVGLS-PNSVDAL-LKLDEDRVITGSENG----LISLVGILPNRI 114 (203)
Q Consensus 48 ~~~~l~~~~~-----d~~i~v~d~~~~~~~~~~~~~~~-~~~v~~~-~~~~~~~l~~~~~dg----~v~v~d~~~~~~ 114 (203)
++...+.|+. ...+.+||+.+ ..+..+.... ....... ...++++.+.|+.++ .+.+||+.+.+-
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~--~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLET--QEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCC--CCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 5566666664 24678888763 3333332101 1111112 345677777777653 356888876543
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=87.18 E-value=11 Score=28.67 Aligned_cols=116 Identities=11% Similarity=0.078 Sum_probs=66.9
Q ss_pred ccEEEEEEeeCCCEEEEecCCCeEEEEEcCC-----cc-ccceeeecC----CCCceeEE-EeeCC------------CE
Q 028802 38 EELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-----FK-DCSDRFVGL----SPNSVDAL-LKLDE------------DR 94 (203)
Q Consensus 38 ~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~-----~~-~~~~~~~~~----~~~~v~~~-~~~~~------------~~ 94 (203)
..-+.|+++|.+.+-++....+...+||... .. ..+-.+... .....+.+ |+... ..
T Consensus 23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred cccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 3457899999888777777788999999851 11 112222210 01233334 44322 23
Q ss_pred EEEEcCCCcEEEEEccCCce-----eeeeccCCCcceE-EEEEeC--CCCeEEEEe-CCCcEEEEeCC
Q 028802 95 VITGSENGLISLVGILPNRI-----IQPIAEHSEYPIE-SLALSH--DRKFLGSIS-HDSMLKLWDLD 153 (203)
Q Consensus 95 l~~~~~dg~v~v~d~~~~~~-----~~~~~~~~~~~i~-~~~~~~--~~~~l~~~~-~d~~i~iwd~~ 153 (203)
++.++++|+|.-|...-+.. ...+.......|+ .+++.. .+.+|+.+. ..++|.|||-.
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence 67889999999998543222 1222211112343 355543 356766555 78999999854
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=86.94 E-value=12 Score=28.77 Aligned_cols=111 Identities=12% Similarity=0.206 Sum_probs=62.9
Q ss_pred EEEEEeeCCCEEEEecCC------CeEEEEEcCCccccceeee-------------c-CCCCceeEE-EeeCCCEEEEEc
Q 028802 41 TSVVLMKNGRKVVCGSQS------GTVLLYSWGYFKDCSDRFV-------------G-LSPNSVDAL-LKLDEDRVITGS 99 (203)
Q Consensus 41 ~~l~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~-------------~-~~~~~v~~~-~~~~~~~l~~~~ 99 (203)
-+|++.+++.++++.-.+ ..|..++.. +.....+. . .....+-.+ ++|+|+.|+++.
T Consensus 88 Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 88 EGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred hHeEEecCCCEEEEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 377887788888776666 778888764 33333321 0 023346677 799999766654
Q ss_pred C-----CC--c-------EEE--EEccC-Cceee--eeccC------CCcceEEEEEeCCCCeEEEEe-----CCCcEEE
Q 028802 100 E-----NG--L-------ISL--VGILP-NRIIQ--PIAEH------SEYPIESLALSHDRKFLGSIS-----HDSMLKL 149 (203)
Q Consensus 100 ~-----dg--~-------v~v--~d~~~-~~~~~--~~~~~------~~~~i~~~~~~~~~~~l~~~~-----~d~~i~i 149 (203)
+ ++ . +++ ||..+ +.... .+... ....|+.+.+-+++++|+.-- ....++|
T Consensus 166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri 245 (326)
T PF13449_consen 166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRI 245 (326)
T ss_pred CccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEE
Confidence 3 22 1 344 55544 32221 22222 134789999999998776322 2344555
Q ss_pred EeCC
Q 028802 150 WDLD 153 (203)
Q Consensus 150 wd~~ 153 (203)
+.+.
T Consensus 246 ~~v~ 249 (326)
T PF13449_consen 246 YRVD 249 (326)
T ss_pred EEEE
Confidence 5443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.64 E-value=20 Score=30.86 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=31.9
Q ss_pred EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCC
Q 028802 88 LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR 135 (203)
Q Consensus 88 ~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 135 (203)
.+|+..+|+.-...|.|.+.+....+++..+......+.-.|+|..+.
T Consensus 224 VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 224 VSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred EcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 688888898888899998888777666655542222133356665443
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=85.36 E-value=4.4 Score=29.07 Aligned_cols=48 Identities=8% Similarity=0.172 Sum_probs=35.2
Q ss_pred CEEEEEcCCCcEEEEEccC--CceeeeeccCCCcceEEEEEeCCCCeEEEEe
Q 028802 93 DRVITGSENGLISLVGILP--NRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 93 ~~l~~~~~dg~v~v~d~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 142 (203)
..++.+...+.|-+|++.. .+.+..+..- + .|..+.++..|.||++.=
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~-~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-G-RVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-h-heeEEEeccccceEEEEE
Confidence 4444446677899999883 3455556544 3 799999999999999865
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=85.08 E-value=19 Score=29.31 Aligned_cols=145 Identities=10% Similarity=-0.089 Sum_probs=67.3
Q ss_pred CEEEEEcCC-----CeEEEEEcCCCeEEE--eecC-CcccEEEEEEeeCCCEEEEecCCC-----eEEEEEcCCccccce
Q 028802 8 MKLLGTSGD-----GTLSVCNLRKNTVQT--RSEF-SEEELTSVVLMKNGRKVVCGSQSG-----TVLLYSWGYFKDCSD 74 (203)
Q Consensus 8 ~~l~~~~~d-----~~i~v~d~~~~~~~~--~~~~-~~~~i~~l~~~~~~~~l~~~~~d~-----~i~v~d~~~~~~~~~ 74 (203)
++++.|+.+ +.+.+||+.+.+-.. .+.. ...+....+..-++++++.|+.++ .+..||+.+ ..+.
T Consensus 230 ~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t--~~W~ 307 (470)
T PLN02193 230 TLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVD--KKWF 307 (470)
T ss_pred EEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCC--CEEE
Confidence 344555543 357788887653322 1110 111111112223556666666543 466777653 2222
Q ss_pred eeecC-----CCCceeEEEeeCCCEEEEEcCC----CcEEEEEccCCceeeeecc---CCCcceEEEEEeCCCCeEEEEe
Q 028802 75 RFVGL-----SPNSVDALLKLDEDRVITGSEN----GLISLVGILPNRIIQPIAE---HSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 75 ~~~~~-----~~~~v~~~~~~~~~~l~~~~~d----g~v~v~d~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~ 142 (203)
.+... .... ..+...+++.++.++.+ ..+.+||+.+.+-...-.. .......++ ..-+++.++.|+
T Consensus 308 ~~~~~~~~~~~R~~-~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~GG 385 (470)
T PLN02193 308 HCSTPGDSFSIRGG-AGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIVIFGG 385 (470)
T ss_pred eCCCCCCCCCCCCC-cEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEEEECC
Confidence 22110 0111 11223466777776654 4588999887654322111 111111222 233566777777
Q ss_pred CC--------------CcEEEEeCCCcc
Q 028802 143 HD--------------SMLKLWDLDDIL 156 (203)
Q Consensus 143 ~d--------------~~i~iwd~~~~~ 156 (203)
.. ..+.+||+.+..
T Consensus 386 ~~~~~~~~~~~~~~~~ndv~~~D~~t~~ 413 (470)
T PLN02193 386 EIAMDPLAHVGPGQLTDGTFALDTETLQ 413 (470)
T ss_pred ccCCccccccCccceeccEEEEEcCcCE
Confidence 43 246778876553
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=84.78 E-value=6.2 Score=24.02 Aligned_cols=41 Identities=15% Similarity=0.025 Sum_probs=27.2
Q ss_pred CCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe
Q 028802 100 ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 100 ~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 142 (203)
..|.+..||+.+++....+.+- . -...|++++|+.+|+.+-
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L-~-fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGL-Y-FPNGVALSPDESFVLVAE 75 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEE-S-SEEEEEE-TTSSEEEEEE
T ss_pred CCcCEEEEECCCCeEEEehhCC-C-ccCeEEEcCCCCEEEEEe
Confidence 3567888999887765444443 2 367899999999876554
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=84.71 E-value=18 Score=32.30 Aligned_cols=105 Identities=24% Similarity=0.299 Sum_probs=65.9
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeec--CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG- 78 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~- 78 (203)
|..|-..++++|-. ..+++|++...++++..+ .-...|..+.+ .+..+++|...-.+.++-.+.....+..+..
T Consensus 940 Ai~~f~~~~LagvG-~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD 1016 (1205)
T KOG1898|consen 940 AICPFQGRVLAGVG-RFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFADD 1016 (1205)
T ss_pred EEeccCCEEEEecc-cEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEEeCC
Confidence 45565666666544 689999998776654443 22456667766 4667888877666666655544455555543
Q ss_pred CCCCceeEEEeeCCCEEEEEcCCCcEEEEEc
Q 028802 79 LSPNSVDALLKLDEDRVITGSENGLISLVGI 109 (203)
Q Consensus 79 ~~~~~v~~~~~~~~~~l~~~~~dg~v~v~d~ 109 (203)
..+..+++++.-|...++.+..-|.+.+.-+
T Consensus 1017 ~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1017 PVPRHVTALELLDYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred CccceeeEEEEecCCceeeccccCcEEEEEC
Confidence 0223455555667777888877787777654
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=84.69 E-value=14 Score=27.27 Aligned_cols=132 Identities=11% Similarity=0.051 Sum_probs=64.7
Q ss_pred EEEEcCCCeEEEeecC-CcccEEEEEEeeCCCEEEEecC-C--CeEEEEEcCC-ccc-cce----eeecCCCCceeEEEe
Q 028802 20 SVCNLRKNTVQTRSEF-SEEELTSVVLMKNGRKVVCGSQ-S--GTVLLYSWGY-FKD-CSD----RFVGLSPNSVDALLK 89 (203)
Q Consensus 20 ~v~d~~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~-d--~~i~v~d~~~-~~~-~~~----~~~~~~~~~v~~~~~ 89 (203)
.+||+.+++... +.. ...-..+-.+.++|++|++|+. + ..+++|+... ... .+. .+.. ..--.+...-
T Consensus 49 ~~yD~~tn~~rp-l~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~-~RWYpT~~~L 126 (243)
T PF07250_consen 49 VEYDPNTNTFRP-LTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQS-GRWYPTATTL 126 (243)
T ss_pred EEEecCCCcEEe-ccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccC-CCccccceEC
Confidence 467777664422 221 1112223346689999998876 2 3477776532 000 111 1111 1111222246
Q ss_pred eCCCEEEEEcCCCc-EEEEEccC-C-cee-eeecc----CCCcceE-EEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 90 LDEDRVITGSENGL-ISLVGILP-N-RII-QPIAE----HSEYPIE-SLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 90 ~~~~~l~~~~~dg~-v~v~d~~~-~-~~~-~~~~~----~~~~~i~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
|+|+.|+.|+.... .-+|.... . ... ..+.. ......+ .+...|+|+.++.+..+. .|||..+.
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n 199 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTN 199 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCC
Confidence 79999999887643 33444321 1 111 11111 0010111 356789999998887654 45566554
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.56 E-value=13 Score=26.82 Aligned_cols=103 Identities=13% Similarity=0.065 Sum_probs=55.6
Q ss_pred CCEEEEEcC--CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEec-CCCeEEEEEcCCccccceeeecCCCCc
Q 028802 7 AMKLLGTSG--DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSDRFVGLSPNS 83 (203)
Q Consensus 7 ~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~ 83 (203)
|.++.+.+. ...|++|++.+++.+..-.-....+..--...-+..+..-. .+|....||..+ .+++..+. ..+.
T Consensus 56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t-~~~lg~~~--y~Ge 132 (262)
T COG3823 56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADT-LEELGRFS--YEGE 132 (262)
T ss_pred CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHH-hhhhcccc--cCCc
Confidence 444445443 35699999999887655443222333222233344444333 467778888764 34444443 2344
Q ss_pred eeEEEeeCCCEEEEEcCCCcEEEEEccCCc
Q 028802 84 VDALLKLDEDRVITGSENGLISLVGILPNR 113 (203)
Q Consensus 84 v~~~~~~~~~~l~~~~~dg~v~v~d~~~~~ 113 (203)
-+.+ ..++.-++.+...-.++.-|..+..
T Consensus 133 GWgL-t~d~~~LimsdGsatL~frdP~tfa 161 (262)
T COG3823 133 GWGL-TSDDKNLIMSDGSATLQFRDPKTFA 161 (262)
T ss_pred ceee-ecCCcceEeeCCceEEEecCHHHhh
Confidence 4555 3344556666555567776765543
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=84.56 E-value=14 Score=27.24 Aligned_cols=115 Identities=13% Similarity=0.126 Sum_probs=62.2
Q ss_pred cccccCCEEEEEcC-C--CeEEEEEcCC---C-eEE---EeecCCcccEEEEEEeeCCCEEEEecCCC-eEEEEEcCCcc
Q 028802 2 TFAADAMKLLGTSG-D--GTLSVCNLRK---N-TVQ---TRSEFSEEELTSVVLMKNGRKVVCGSQSG-TVLLYSWGYFK 70 (203)
Q Consensus 2 ~~sp~~~~l~~~~~-d--~~i~v~d~~~---~-~~~---~~~~~~~~~i~~l~~~~~~~~l~~~~~d~-~i~v~d~~~~~ 70 (203)
++-|||++|.+|+. + ..+++++... . ... ..+ .....--.....|||+.|+.|+... +..+|.-....
T Consensus 73 ~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m-~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~ 151 (243)
T PF07250_consen 73 AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDM-QSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPG 151 (243)
T ss_pred CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccc-cCCCccccceECCCCCEEEEeCcCCCcccccCCccCC
Confidence 35689999988865 2 3577777543 1 110 011 1122333455668999999988764 34444432111
Q ss_pred c-cce--eeec---CCCCcee-EE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeec
Q 028802 71 D-CSD--RFVG---LSPNSVD-AL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA 119 (203)
Q Consensus 71 ~-~~~--~~~~---~~~~~v~-~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~ 119 (203)
. ... .+.. ......+ .+ ..|+|++++.+..+. .+||..+.+.+..+.
T Consensus 152 ~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 152 PGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTLP 206 (243)
T ss_pred CCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeCC
Confidence 1 111 1110 0111222 22 489999999998764 457887776655554
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=84.38 E-value=25 Score=30.00 Aligned_cols=146 Identities=14% Similarity=0.094 Sum_probs=0.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEc---------CCCeEEEeecCCcccEEEEEEeeCCCEEEEecC-CC---eEEEEEcC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNL---------RKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG---TVLLYSWG 67 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~---------~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d~---~i~v~d~~ 67 (203)
+.|.++++.+++...+|.|.+|+. ........-..+..-|..........++++.+. .+ ..+++.+.
T Consensus 135 Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ykL~~l~ 214 (670)
T PF10395_consen 135 IKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSYKLISLS 214 (670)
T ss_pred EEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEEEEEEec
Q ss_pred Cccccceeee---cCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccC-------CCcceEEEEEeCCCC
Q 028802 68 YFKDCSDRFV---GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEH-------SEYPIESLALSHDRK 136 (203)
Q Consensus 68 ~~~~~~~~~~---~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~ 136 (203)
.....+..+. . +....... |......++.- .+..|.+|++...+...++... .. .|.-.+.+++ +
T Consensus 215 ~~~~~~~El~s~~~-e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~-~vSl~~~s~n-R 290 (670)
T PF10395_consen 215 NESSSIFELSSTIL-ENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDD-LVSLKPPSPN-R 290 (670)
T ss_pred cCCcceEEeehhee-ccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhcccccc-ceEeecCCCC-e
Q ss_pred eEEEEeCCCcEEEEeC
Q 028802 137 FLGSISHDSMLKLWDL 152 (203)
Q Consensus 137 ~l~~~~~d~~i~iwd~ 152 (203)
.|++. +..|++.|+
T Consensus 291 vLLs~--~nkIyLld~ 304 (670)
T PF10395_consen 291 VLLSV--NNKIYLLDL 304 (670)
T ss_pred EEEEc--CCEEEEEee
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=84.27 E-value=17 Score=28.05 Aligned_cols=41 Identities=5% Similarity=-0.143 Sum_probs=18.5
Q ss_pred cEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCC
Q 028802 103 LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 103 ~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 144 (203)
.+.+||..+.+-...-... .......+..-+++.++.|+.+
T Consensus 291 ~~e~yd~~~~~W~~~~~lp-~~~~~~~~~~~~~~iyv~GG~~ 331 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLP-QGLAYGVSVSWNNGVLLIGGEN 331 (346)
T ss_pred EeeEEEecCCcccccCCCC-CCceeeEEEEcCCEEEEEeccC
Confidence 3567887654322111111 1112222334466677777644
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=83.83 E-value=3 Score=19.02 Aligned_cols=25 Identities=12% Similarity=0.186 Sum_probs=17.7
Q ss_pred eEEEEEeCCCCeEEEEeCCCcEEEE
Q 028802 126 IESLALSHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 126 i~~~~~~~~~~~l~~~~~d~~i~iw 150 (203)
...++.+++|+.+++-.....|.+|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4667778888777777666666654
|
For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=83.78 E-value=3.9 Score=35.03 Aligned_cols=73 Identities=19% Similarity=0.330 Sum_probs=48.8
Q ss_pred ceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028802 83 SVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
.+.++ -+|.+.-+++++.||.|.+|+.-+.+........ . +-..+.|...| |++...|+...-|.-..-.+++
T Consensus 16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~-~-p~~nlv~tnhg--l~~~tsdrr~la~~~dgvvqqq 89 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEA-K-PKENLVFTNHG--LVTATSDRRALAWKEDGVVQQQ 89 (1636)
T ss_pred eeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhc-C-Cccceeeeccc--eEEEeccchhheeeccCcchhh
Confidence 35556 5799999999999999999998765543333322 1 34556665444 6666778888888765544443
|
|
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=83.03 E-value=15 Score=27.99 Aligned_cols=64 Identities=17% Similarity=0.295 Sum_probs=43.5
Q ss_pred CCCEEEEEcCCCcEEEEEccC--CceeeeeccCCCcceEEEEEeCCCCeEEEEe-CCCcEEEEeCCCcccC
Q 028802 91 DEDRVITGSENGLISLVGILP--NRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLDDILKG 158 (203)
Q Consensus 91 ~~~~l~~~~~dg~v~v~d~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~ 158 (203)
++++++.|+.+| +++.++.. +.....+.. . +|+++...+.-+.|++.+ ....++++++.....+
T Consensus 12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~~~--~-~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~ 78 (302)
T smart00036 12 DGKWLLVGTEEG-LYVLNISDQPGTLEKLIGR--R-SVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEK 78 (302)
T ss_pred CCcEEEEEeCCc-eEEEEcccCCCCeEEecCc--C-ceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhh
Confidence 346899999998 45555554 334443322 2 799999999888777665 3445999999776643
|
Unpublished observations. |
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=82.95 E-value=18 Score=27.31 Aligned_cols=93 Identities=16% Similarity=0.161 Sum_probs=54.5
Q ss_pred CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEec------CCCeEEEEEcCCccccceeeecC----CCCcee
Q 028802 16 DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS------QSGTVLLYSWGYFKDCSDRFVGL----SPNSVD 85 (203)
Q Consensus 16 d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~------~d~~i~v~d~~~~~~~~~~~~~~----~~~~v~ 85 (203)
...|++||..+.+-...-.+-.+.|+.|.|..+.++++.|. ....+..||+.. ..+..+... -.+++.
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~--~~w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKN--QTWSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCC--CeeeecCCcccccCCCcEE
Confidence 45699999887654443344567899999986666666654 345678888863 344444330 235666
Q ss_pred EE-E-eeCCCEEE-EEc-CC--CcEEEEEcc
Q 028802 86 AL-L-KLDEDRVI-TGS-EN--GLISLVGIL 110 (203)
Q Consensus 86 ~~-~-~~~~~~l~-~~~-~d--g~v~v~d~~ 110 (203)
.+ + ..++..+. .|. .. ..|..||-.
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs 123 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKYDGS 123 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEEcCC
Confidence 66 3 34444343 333 22 346667643
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=82.86 E-value=20 Score=27.70 Aligned_cols=106 Identities=9% Similarity=0.002 Sum_probs=49.2
Q ss_pred CCEEEEEcCC-----CeEEEEEcCCCeEE--EeecC---CcccEEEEEEeeCCCEEEEecCC-----------CeEEEEE
Q 028802 7 AMKLLGTSGD-----GTLSVCNLRKNTVQ--TRSEF---SEEELTSVVLMKNGRKVVCGSQS-----------GTVLLYS 65 (203)
Q Consensus 7 ~~~l~~~~~d-----~~i~v~d~~~~~~~--~~~~~---~~~~i~~l~~~~~~~~l~~~~~d-----------~~i~v~d 65 (203)
+++++.|+.+ ..+.+||+.+.+-. ..+.. ...+....+..-++..++.|+.+ ..+.+||
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd 165 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYN 165 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEE
Confidence 3444555542 35778888765322 22210 11122222223355666666643 2467788
Q ss_pred cCCccccceeeecCCC----Cc-eeEEEeeCCCEEEEEcC-------------CCcEEEEEccCCcee
Q 028802 66 WGYFKDCSDRFVGLSP----NS-VDALLKLDEDRVITGSE-------------NGLISLVGILPNRII 115 (203)
Q Consensus 66 ~~~~~~~~~~~~~~~~----~~-v~~~~~~~~~~l~~~~~-------------dg~v~v~d~~~~~~~ 115 (203)
..+ ..+..+.. .. .. -.++...++++++.++. ...|.+||+.+.+-.
T Consensus 166 ~~~--~~W~~l~~-~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~ 230 (341)
T PLN02153 166 IAD--GKWVQLPD-PGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWT 230 (341)
T ss_pred CCC--CeEeeCCC-CCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEE
Confidence 753 23333322 11 00 01122345566555442 145888998776433
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=82.85 E-value=22 Score=28.16 Aligned_cols=144 Identities=13% Similarity=0.114 Sum_probs=80.4
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEe----eCCCE--EEEec-CC---CeEEEEEcCCccccce
Q 028802 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLM----KNGRK--VVCGS-QS---GTVLLYSWGYFKDCSD 74 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~----~~~~~--l~~~~-~d---~~i~v~d~~~~~~~~~ 74 (203)
|...+|+.....+-+.+||+... .++.+.. ++++.+..- -.++. |++++ .+ ..|++|-+......+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk-~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGK-ELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS--EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCEEEEcCCCc-EEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 44557777788899999998754 5555643 334444322 23433 33433 32 5799998853222333
Q ss_pred eeec------CCCCceeEE--E-ee-CCC-EEEEEcCCCcEEEEEcc---CC----ceeeeeccCCCcceEEEEEeCCCC
Q 028802 75 RFVG------LSPNSVDAL--L-KL-DED-RVITGSENGLISLVGIL---PN----RIIQPIAEHSEYPIESLALSHDRK 136 (203)
Q Consensus 75 ~~~~------~~~~~v~~~--~-~~-~~~-~l~~~~~dg~v~v~d~~---~~----~~~~~~~~~~~~~i~~~~~~~~~~ 136 (203)
.+.. .....+..+ + +| +|. +++....+|.+..|-+. .+ +.+..+...+ .+..++......
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s--Q~EGCVVDDe~g 220 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS--QPEGCVVDDETG 220 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS---EEEEEEETTTT
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC--cceEEEEecccC
Confidence 3321 011223333 3 44 455 44456678888888764 23 3456666553 688889988888
Q ss_pred eEEEEeCCCcEEEEeCC
Q 028802 137 FLGSISHDSMLKLWDLD 153 (203)
Q Consensus 137 ~l~~~~~d~~i~iwd~~ 153 (203)
+|+.+-.+.-|.-|+.+
T Consensus 221 ~LYvgEE~~GIW~y~Ae 237 (381)
T PF02333_consen 221 RLYVGEEDVGIWRYDAE 237 (381)
T ss_dssp EEEEEETTTEEEEEESS
T ss_pred CEEEecCccEEEEEecC
Confidence 99999888777777765
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST) | Back alignment and domain information |
|---|
Probab=82.45 E-value=8.8 Score=29.21 Aligned_cols=70 Identities=19% Similarity=0.344 Sum_probs=48.4
Q ss_pred eeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCc--ce--EEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 84 VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY--PI--ESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~--~i--~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
+.++ ..++|.+|+++-.-..|.+.+..+|+.+..+.+.... .. ...+|-.+-+++-.+..++.|.+||=.
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence 4455 4668899999988899999999999999988665211 11 113344454555455678889999863
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=82.14 E-value=6.2 Score=32.29 Aligned_cols=60 Identities=12% Similarity=0.163 Sum_probs=45.3
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcC
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~ 67 (203)
..++|+|+.-|-|++||--.-+...-+.+-...|..+..+.+|.++++.+. ..+.+-|++
T Consensus 573 sGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 573 SGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred CceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 458999999999999996544444455666778999999999998876654 566777764
|
|
| >PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides | Back alignment and domain information |
|---|
Probab=81.86 E-value=9.1 Score=23.13 Aligned_cols=29 Identities=21% Similarity=0.302 Sum_probs=23.3
Q ss_pred ceEEEEEeCCCCeEEEEe-CCCcEEEEeCC
Q 028802 125 PIESLALSHDRKFLGSIS-HDSMLKLWDLD 153 (203)
Q Consensus 125 ~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~ 153 (203)
....|.++|++++|.+++ ..+.|++|...
T Consensus 55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 55 FANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 356789999999987666 67889999864
|
The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=81.32 E-value=13 Score=24.58 Aligned_cols=106 Identities=10% Similarity=0.088 Sum_probs=60.2
Q ss_pred EEeeCCCEEEEecCCCeEEEEEcCCcc-------ccceeeecCCCCceeEE-E---ee--CCCEEEEEcCCCcEEEEEcc
Q 028802 44 VLMKNGRKVVCGSQSGTVLLYSWGYFK-------DCSDRFVGLSPNSVDAL-L---KL--DEDRVITGSENGLISLVGIL 110 (203)
Q Consensus 44 ~~~~~~~~l~~~~~d~~i~v~d~~~~~-------~~~~~~~~~~~~~v~~~-~---~~--~~~~l~~~~~dg~v~v~d~~ 110 (203)
.|.....-|++++..+.|.|++..... ..+..+. -...|+++ . .| ....|+.|+.. .|..||+.
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN--in~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~ 81 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN--INQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVE 81 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE--CCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEcc
Confidence 344444567777777888888764321 1223333 34556666 2 22 34556666554 68899998
Q ss_pred CCceeeeeccCCCcceEEEEEeC---CCCeEEEEeCCCcEEEEeCCC
Q 028802 111 PNRIIQPIAEHSEYPIESLALSH---DRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 111 ~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d~~i~iwd~~~ 154 (203)
....+..-..+ + .+.++.+-. ...-|+..+.+..|.-||...
T Consensus 82 ~N~d~Fyke~~-D-Gvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G 126 (136)
T PF14781_consen 82 NNSDLFYKEVP-D-GVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG 126 (136)
T ss_pred cCchhhhhhCc-c-ceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence 77666544444 3 466666632 223445555567777777643
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=81.00 E-value=23 Score=27.26 Aligned_cols=104 Identities=14% Similarity=0.133 Sum_probs=57.7
Q ss_pred cccEEEEEEeeCCCEEEEecCCCe------EEEEEcCCcccc---ce-----eeecCCCC--------ceeEE-EeeCCC
Q 028802 37 EEELTSVVLMKNGRKVVCGSQSGT------VLLYSWGYFKDC---SD-----RFVGLSPN--------SVDAL-LKLDED 93 (203)
Q Consensus 37 ~~~i~~l~~~~~~~~l~~~~~d~~------i~v~d~~~~~~~---~~-----~~~~~~~~--------~v~~~-~~~~~~ 93 (203)
-+.+..|.+.+++..++..+.++. ++.+.+...... +. .+.. ..+ ..-.+ +.+++.
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRD-PDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccC-CCCCcCCcCCCChhHeEEecCCC
Confidence 356788888865555666666666 555555431100 00 1111 111 22345 556676
Q ss_pred EEEEEcCC------CcEEEEEccCCceeeeecc--------------CCCcceEEEEEeCCCCeEEEEe
Q 028802 94 RVITGSEN------GLISLVGILPNRIIQPIAE--------------HSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 94 ~l~~~~~d------g~v~v~d~~~~~~~~~~~~--------------~~~~~i~~~~~~~~~~~l~~~~ 142 (203)
++++.=.+ ..|+.++.. |+.+..+.. .......+++++|+|+.|+++.
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 66665555 678888865 554433311 1122688999999999666554
|
|
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.65 E-value=34 Score=30.93 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=23.3
Q ss_pred eCCCCeEEEEeCCCcEEEEeCCCccc
Q 028802 132 SHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 132 ~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
.+++..++++..||.+..||...+..
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCce
Confidence 67789999999999999999998755
|
|
| >COG5129 MAK16 Nuclear protein with HMG-like acidic region [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.63 E-value=1.2 Score=31.63 Aligned_cols=18 Identities=28% Similarity=0.514 Sum_probs=11.5
Q ss_pred CCCEEEEecCCCeEEEEE
Q 028802 48 NGRKVVCGSQSGTVLLYS 65 (203)
Q Consensus 48 ~~~~l~~~~~d~~i~v~d 65 (203)
++++..+-..+|.+++|-
T Consensus 46 NSrYATVr~dngkLyLym 63 (303)
T COG5129 46 NSRYATVRADNGKLYLYM 63 (303)
T ss_pred cCcceEEEecCCEEEEEe
Confidence 445555556677888774
|
|
| >PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST) | Back alignment and domain information |
|---|
Probab=80.05 E-value=11 Score=28.76 Aligned_cols=63 Identities=14% Similarity=0.136 Sum_probs=44.2
Q ss_pred cccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccc-----EEEEEEeeCCCEEEEecCCCeEEEEEc
Q 028802 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEE-----LTSVVLMKNGRKVVCGSQSGTVLLYSW 66 (203)
Q Consensus 4 sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-----i~~l~~~~~~~~l~~~~~d~~i~v~d~ 66 (203)
.++|.+|+++-.-.+|.+.+-.+|+.+..+.+.... -...+|-.+-+.+-.+..++.|.+||=
T Consensus 152 ~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 152 DDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred cCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 457889999988899999999999999988765221 111334344445545567888999985
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 203 | |||
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.97 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.97 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.97 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.97 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.97 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.97 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.97 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.97 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.97 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.97 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.97 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.97 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.97 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.96 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.96 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.96 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.96 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.96 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.96 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.96 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.96 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.96 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.96 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.96 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.96 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.96 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.96 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.96 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.95 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.95 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.95 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.95 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.95 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.95 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.95 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.95 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.95 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.95 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.95 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.95 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.95 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.95 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.95 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.95 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.95 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.95 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.94 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.94 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.94 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.94 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.94 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.94 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.94 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.94 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.94 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.94 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.94 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.94 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.94 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.94 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.94 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.94 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.94 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.94 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.94 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.94 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.94 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.94 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.94 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.94 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.94 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.94 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.94 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.94 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.93 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.93 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.93 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.93 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.93 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.93 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.93 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.93 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.93 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.93 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.93 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.93 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.93 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.93 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.93 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.93 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.92 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.92 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.92 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.92 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.92 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.92 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.92 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.92 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.92 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.92 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.92 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.92 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.92 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.92 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.92 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.91 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.91 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.91 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.91 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.91 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.91 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.9 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.9 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.9 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.9 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.9 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.9 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.89 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.88 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.88 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.88 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.88 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.88 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.87 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.85 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.84 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.83 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.82 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.81 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.79 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.78 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.78 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.77 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.77 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.77 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.76 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.76 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.75 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.75 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.74 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.73 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.73 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.73 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.72 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.72 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.71 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.7 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.7 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.7 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.7 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.7 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.7 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.7 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.69 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.68 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.68 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.68 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.67 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.65 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.63 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.63 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.62 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.62 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.61 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.59 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.59 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.58 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.56 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.53 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.51 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.5 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.5 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.48 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.47 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.47 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.45 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.44 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.44 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.43 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.43 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.43 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.43 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.42 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.41 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.4 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.39 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.39 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.37 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.36 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.35 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.35 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.33 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.32 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.32 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.25 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.24 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.24 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.24 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.23 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.23 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.22 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.2 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.18 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.16 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.14 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.13 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.13 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.12 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.11 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.11 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.1 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.08 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.08 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.08 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.02 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.99 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.96 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.95 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.94 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.93 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.92 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.9 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.87 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.87 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.87 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.86 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.85 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.82 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.82 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.78 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.78 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.75 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.74 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.74 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.71 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.7 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.67 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.56 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.55 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.55 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.53 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.53 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.5 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.46 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.45 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.45 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.43 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.43 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.38 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.35 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.34 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.33 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 98.33 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.32 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.31 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.31 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.3 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.26 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.23 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.22 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.21 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.19 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.18 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.18 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.17 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.13 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.11 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.07 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.04 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.98 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.97 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.95 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.95 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.94 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.93 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.93 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.88 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.79 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.76 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.75 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.72 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.72 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.67 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.58 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.53 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.52 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.5 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.48 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.46 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.46 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 97.46 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 97.43 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 97.43 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 97.41 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.4 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.37 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.36 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 97.32 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 97.28 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.22 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.1 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.1 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.08 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.07 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.01 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.0 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 96.95 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 96.87 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 96.82 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 96.81 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 96.78 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.76 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.71 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.62 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.61 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 96.52 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.48 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.46 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 96.39 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 96.38 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.34 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 96.31 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.29 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.29 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 96.1 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 95.77 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.77 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 95.38 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 95.26 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 95.02 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 94.8 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 94.32 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 94.32 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 94.18 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 94.16 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 94.06 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 93.7 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 93.46 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 93.46 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 93.3 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 92.88 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 91.82 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 91.24 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 90.93 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 90.1 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 88.19 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 84.89 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 84.67 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 84.04 | |
| 3no0_A | 276 | DNA gyrase subunit A; DNA topology, topoisomerase, | 83.51 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 83.14 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 82.86 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 82.39 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 80.5 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 80.5 |
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-31 Score=200.27 Aligned_cols=150 Identities=12% Similarity=0.238 Sum_probs=141.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++|+.|+.|++||+.+++.+..+.+|..+|.+++|+|++++|++++.|+.|++||+.. ......+.+ |
T Consensus 170 ~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~-h 247 (321)
T 3ow8_A 170 IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH-ANLAGTLSG-H 247 (321)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTT-CCEEEEECC-C
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCC-cceeEEEcC-C
Confidence 47999999999999999999999999999999999999999999999999999999999999999975 566778888 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
...|.++ |+|++.+|++++.|+.|++||+.+++++..+..|.. .|.+++|+|++++|++++.|+.|++||+.
T Consensus 248 ~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~-~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 248 ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQD-QVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCC-cEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999 999999999999999999999999999999999965 89999999999999999999999999973
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-31 Score=196.01 Aligned_cols=154 Identities=16% Similarity=0.243 Sum_probs=141.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
|+|+|++++|++++.||+|++||+.++..+..+..|..+|.+++|+|++++|++++.|+.|++||+.+ +..+..+.+ |
T Consensus 19 ~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~-~~~~~~~~~-h 96 (304)
T 2ynn_A 19 IDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT-GEKVVDFEA-H 96 (304)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT-CCEEEEEEC-C
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC-CcEEEEEeC-C
Confidence 57999999999999999999999999999999999999999999999999999999999999999975 577788899 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC-ceeeeeccCCCcceEEEEEeC-CCCeEEEEeCCCcEEEEeCCCccc
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~-~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
...|.++ |+|++++|++++.|+.|++||++++ .....+.+|.. .|.+++|+| ++.+|++++.|+.|++||+++..+
T Consensus 97 ~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~-~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~ 175 (304)
T 2ynn_A 97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH-FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP 175 (304)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCS-CEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC
T ss_pred CCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCC-cEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc
Confidence 9999999 9999999999999999999999987 45567888855 899999999 678999999999999999976543
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-30 Score=195.09 Aligned_cols=156 Identities=15% Similarity=0.286 Sum_probs=145.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++++.++.|++|++.+++....+..+...|.+++|+|++++|++++.|+.|++||+.+ +..+..+.+ |
T Consensus 128 ~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~-~~~~~~~~~-h 205 (321)
T 3ow8_A 128 LAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT-GKLLHTLEG-H 205 (321)
T ss_dssp EEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECC-C
T ss_pred EEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCC-CcEEEEEcc-c
Confidence 47999999999999999999999999988888888889999999999999999999999999999975 567788888 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
...+.++ |+|++++|++++.|+.|++||++++..+..+.+|.. .|.+++|+|++++|++++.|+.|++||+.++.+..
T Consensus 206 ~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~-~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~ 284 (321)
T 3ow8_A 206 AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS-WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVH 284 (321)
T ss_dssp SSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred CCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEE
Confidence 9999999 999999999999999999999999999999999965 89999999999999999999999999998876543
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-30 Score=194.80 Aligned_cols=156 Identities=19% Similarity=0.200 Sum_probs=133.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCC-CEEEEecCCCeEEEEEcCCccccceeeec-
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRFVG- 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~- 78 (203)
|+|+|+|++|++|+.|++|++||+.+++++..+.+|...|.+++|+|++ .+|++++.|+.|++||++. ++....+..
T Consensus 133 v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~ 211 (344)
T 4gqb_B 133 VSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC-PKPASQIGCS 211 (344)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS-SSCEEECC--
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccc-cceeeeeecc
Confidence 5799999999999999999999999999999999999999999999988 5789999999999999985 355544432
Q ss_pred CCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCC-CeEEEEeCCCcEEEEeCCCc
Q 028802 79 LSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 79 ~~~~~v~~~-~~~~-~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~ 155 (203)
.+...+.++ |+|+ +.++++|+.||.|++||+++++++..+.+|.. .|++++|+|++ ++|++++.|++|+|||+.++
T Consensus 212 ~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~-~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~ 290 (344)
T 4gqb_B 212 APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQ-CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS 290 (344)
T ss_dssp --CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTCC
T ss_pred eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCC-CEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Confidence 044567788 8884 57888999999999999999999999999965 89999999998 57999999999999999887
Q ss_pred ccC
Q 028802 156 LKG 158 (203)
Q Consensus 156 ~~~ 158 (203)
+..
T Consensus 291 ~~~ 293 (344)
T 4gqb_B 291 ELF 293 (344)
T ss_dssp EEE
T ss_pred cEE
Confidence 643
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-30 Score=200.10 Aligned_cols=155 Identities=14% Similarity=0.270 Sum_probs=145.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++|+.|++|++||+.+++....+.+|...|.+++|+|++.+|++++.|+.|++||+.. ..++..+.+ |
T Consensus 114 ~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~-~~~~~~~~~-h 191 (410)
T 1vyh_C 114 VIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG-FECIRTMHG-H 191 (410)
T ss_dssp EEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS-SCEEECCCC-C
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CceeEEEcC-C
Confidence 47999999999999999999999999999999999999999999999999999999999999999974 577788888 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
...|.++ |+|++.+|++++.|+.|++||++++.++..+.+|.. .|.++.|+|++.+|++++.|+.|++||+++....
T Consensus 192 ~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~ 269 (410)
T 1vyh_C 192 DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE-WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 269 (410)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCc-cEEEEEECCCCCEEEEEcCCCeEEEEECCCCcee
Confidence 9999999 999999999999999999999999999999999965 8999999999999999999999999999887543
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=188.72 Aligned_cols=154 Identities=15% Similarity=0.285 Sum_probs=144.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++++.|+.|++|++.+++....+.+|...|.+++|+|++++|++++.|+.|++||+.. +..+..+.. |
T Consensus 29 ~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~-~ 106 (312)
T 4ery_A 29 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKG-H 106 (312)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEEC-C
T ss_pred EEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCC-CcEEEEEcC-C
Confidence 47999999999999999999999999989899999999999999999999999999999999999975 567788888 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
...+.++ |+|+++++++++.|+.|++||+++++.+..+..|.. +|.+++|+|++++|++++.|+.|++||++++..
T Consensus 107 ~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~ 183 (312)
T 4ery_A 107 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 183 (312)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCC-cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Confidence 9999999 999999999999999999999999999999998855 899999999999999999999999999987654
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-29 Score=188.13 Aligned_cols=156 Identities=18% Similarity=0.181 Sum_probs=136.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC-eEEEeecCCcccEEEEEEee-CCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKN-TVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
|+|+|++++|++|+.|++|++||+.++ .....+.+|...|.+++|+| ++..|++++.|+.|++||+............
T Consensus 103 ~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~ 182 (304)
T 2ynn_A 103 IAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG 182 (304)
T ss_dssp EEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECC
T ss_pred EEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccC
Confidence 479999999999999999999999876 56678889999999999999 6789999999999999999754333333334
Q ss_pred CCCCceeEE-Eee--CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 79 LSPNSVDAL-LKL--DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 79 ~~~~~v~~~-~~~--~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
+...+..+ |+| ++.+|++++.|+.|++||+++++++..+.+|.. .|.+++|+|++++|++++.|+.|++||+.++
T Consensus 183 -~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 183 -QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp -CTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred -CcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC-CEEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 55677777 755 788999999999999999999999999999965 8999999999999999999999999999887
Q ss_pred ccC
Q 028802 156 LKG 158 (203)
Q Consensus 156 ~~~ 158 (203)
...
T Consensus 261 ~~~ 263 (304)
T 2ynn_A 261 KVE 263 (304)
T ss_dssp CEE
T ss_pred cee
Confidence 654
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-29 Score=189.37 Aligned_cols=154 Identities=19% Similarity=0.290 Sum_probs=141.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|+.|++||+. +..+..+.+ |
T Consensus 71 ~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~--~~~~~~~~~-h 147 (319)
T 3frx_A 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK--GQCLATLLG-H 147 (319)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT--SCEEEEECC-C
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC--CCeEEEEec-c
Confidence 4689999999999999999999999999999999999999999999999999999999999999996 466777888 9
Q ss_pred CCceeEE-EeeC------CCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 81 PNSVDAL-LKLD------EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 81 ~~~v~~~-~~~~------~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
...+.++ +.|. +..+++++.|+.|++||+++++....+.+|.. .|.+++|+|++++|++++.|+.|++||+.
T Consensus 148 ~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~sp~g~~l~s~~~dg~i~iwd~~ 226 (319)
T 3frx_A 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS-NINTLTASPDGTLIASAGKDGEIMLWNLA 226 (319)
T ss_dssp SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCS-CEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 9999999 8774 45899999999999999999998888999965 89999999999999999999999999998
Q ss_pred CcccC
Q 028802 154 DILKG 158 (203)
Q Consensus 154 ~~~~~ 158 (203)
+....
T Consensus 227 ~~~~~ 231 (319)
T 3frx_A 227 AKKAM 231 (319)
T ss_dssp TTEEE
T ss_pred CCcEE
Confidence 87643
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-29 Score=190.56 Aligned_cols=149 Identities=15% Similarity=0.249 Sum_probs=134.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-C
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-L 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~ 79 (203)
++|+|++++|++|+.|+.|++||+.++..+..+.+|...|.+++|+|++.+|++++.|+.|++||++.. ..+..+.. .
T Consensus 190 ~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~-~~~~~~~~~~ 268 (340)
T 1got_B 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD-QELMTYSHDN 268 (340)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCTT
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC-cEEEEEccCC
Confidence 478999999999999999999999999999999999999999999999999999999999999999753 44444432 0
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028802 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 151 (203)
+...+.++ |+|++.++++|+.|+.|++||+.+++.+..+.+|.. +|.+++|+|++.+|++++.|+.|++||
T Consensus 269 ~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~-~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN-RVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred cccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCC-cEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 23468888 999999999999999999999999999999999965 899999999999999999999999997
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=9.2e-29 Score=192.04 Aligned_cols=155 Identities=15% Similarity=0.240 Sum_probs=143.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++|+.|++|++||+.++.++..+.+|...|.++.|+|++.+|++++.|+.|++||+.. ......+.. |
T Consensus 198 v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~-~~~~~~~~~-h 275 (410)
T 1vyh_C 198 VSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT-KECKAELRE-H 275 (410)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEEECC-C
T ss_pred EEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCC-CceeeEecC-C
Confidence 47999999999999999999999999999999999999999999999999999999999999999975 567777888 9
Q ss_pred CCceeEE-EeeC--------------------CCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEE
Q 028802 81 PNSVDAL-LKLD--------------------EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLG 139 (203)
Q Consensus 81 ~~~v~~~-~~~~--------------------~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 139 (203)
...+.++ |+|+ +.++++|+.|+.|++||++++.++..+.+|.. .|.+++|+|++++|+
T Consensus 276 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~ 354 (410)
T 1vyh_C 276 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFIL 354 (410)
T ss_dssp SSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSCEE
T ss_pred CceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCC-cEEEEEEcCCCCEEE
Confidence 9999999 8886 67899999999999999999999999999965 899999999999999
Q ss_pred EEeCCCcEEEEeCCCcccC
Q 028802 140 SISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 140 ~~~~d~~i~iwd~~~~~~~ 158 (203)
+++.|+.|++||+.++...
T Consensus 355 s~s~D~~i~vwd~~~~~~~ 373 (410)
T 1vyh_C 355 SCADDKTLRVWDYKNKRCM 373 (410)
T ss_dssp EEETTTEEEEECCTTSCCC
T ss_pred EEeCCCeEEEEECCCCceE
Confidence 9999999999999876543
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.1e-29 Score=187.46 Aligned_cols=153 Identities=16% Similarity=0.159 Sum_probs=130.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC-------CeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcc---
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRK-------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--- 70 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~-------~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~--- 70 (203)
|+|+|++++|++|+.|++|++|++.. ...+..+.+|...|.+++|+|++++|++++.|+.|++||+...+
T Consensus 64 v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~ 143 (330)
T 2hes_X 64 VAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEY 143 (330)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCC
T ss_pred EEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCe
Confidence 57999999999999999999999853 35667888999999999999999999999999999999995322
Q ss_pred ccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC--ceeeeeccCCCcceEEEEEeCC--CCeEEEEeCCC
Q 028802 71 DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN--RIIQPIAEHSEYPIESLALSHD--RKFLGSISHDS 145 (203)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~--~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~ 145 (203)
.++..+.. |...|.++ |+|++.+|++++.|+.|++|++.++ +++..+.+|.. .|.+++|+|+ +.+|++++.|+
T Consensus 144 ~~~~~~~~-h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~l~s~s~D~ 221 (330)
T 2hes_X 144 ECISVLQE-HSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEG-TVWSSDFDKTEGVFRLCSGSDDS 221 (330)
T ss_dssp EEEEEECC-CSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-CEEEEEECCSSSSCEEEEEETTS
T ss_pred EEEEEecc-CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCC-cEEEEEecCCCCeeEEEEEeCCC
Confidence 34566778 99999999 9999999999999999999999876 57788889965 8999999998 67899999999
Q ss_pred cEEEEeCCCc
Q 028802 146 MLKLWDLDDI 155 (203)
Q Consensus 146 ~i~iwd~~~~ 155 (203)
.|++|++.+.
T Consensus 222 ~v~iw~~~~~ 231 (330)
T 2hes_X 222 TVRVWKYMGD 231 (330)
T ss_dssp CEEEEEEEEE
T ss_pred eEEEEEecCC
Confidence 9999999765
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.9e-29 Score=187.98 Aligned_cols=152 Identities=17% Similarity=0.206 Sum_probs=135.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC--eEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcc--ccceee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKN--TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--DCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~--~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~ 76 (203)
|+|+|++++|++|+.|++|++|++..+ ..+..+.+|...|.+++|+|++++|++++.|+.|++||+.... ..+..+
T Consensus 67 ~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 146 (345)
T 3fm0_A 67 VAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVL 146 (345)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEE
T ss_pred EEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEe
Confidence 579999999999999999999999876 4567889999999999999999999999999999999997532 234567
Q ss_pred ecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc--eeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR--IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
.. |...+.++ |+|++.+|++++.|+.|++|+++++. +...+.+|.. .|.+++|+|++++|++++.|+.|++|++.
T Consensus 147 ~~-h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~-~v~~l~~sp~g~~l~s~s~D~~v~iW~~~ 224 (345)
T 3fm0_A 147 NS-HTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHES-TVWSLAFDPSGQRLASCSDDRTVRIWRQY 224 (345)
T ss_dssp CC-CCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred cC-cCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCC-ceEEEEECCCCCEEEEEeCCCeEEEeccc
Confidence 77 88999999 99999999999999999999998875 4467888855 89999999999999999999999999974
Q ss_pred C
Q 028802 154 D 154 (203)
Q Consensus 154 ~ 154 (203)
.
T Consensus 225 ~ 225 (345)
T 3fm0_A 225 L 225 (345)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-28 Score=183.64 Aligned_cols=156 Identities=17% Similarity=0.283 Sum_probs=142.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.. +..+..+.. |
T Consensus 71 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~-~ 148 (312)
T 4ery_A 71 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPA-H 148 (312)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT-CCEEEEECC-C
T ss_pred EEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CEEEEEecC-C
Confidence 47999999999999999999999999999999999999999999999999999999999999999975 566777888 8
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
...+.++ |+|++.++++++.|+.|++||+++++.+..+..+....+..++|+|++++|++++.|+.|++||++++...
T Consensus 149 ~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 227 (312)
T 4ery_A 149 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 227 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEE
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE
Confidence 9999999 99999999999999999999999998887765443447999999999999999999999999999887643
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-29 Score=188.94 Aligned_cols=153 Identities=14% Similarity=0.213 Sum_probs=134.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEE---eecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcc-ccceee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT---RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-DCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~---~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~ 76 (203)
|+|+|+|++|++|+.|++|+||++.++.... ...+|...|.+++|+|++++|++++.|+.+++|++.... ..+..+
T Consensus 22 l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~ 101 (345)
T 3fm0_A 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTL 101 (345)
T ss_dssp EEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEc
Confidence 5799999999999999999999998875432 236899999999999999999999999999999987432 346678
Q ss_pred ecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc---eeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028802 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR---IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
.+ |...|.++ |+|++++|++++.|+.|++||+.++. ++..+..|.. .|.+++|+|++.+|++++.|+.|++|++
T Consensus 102 ~~-h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~d~~i~~w~~ 179 (345)
T 3fm0_A 102 EG-HENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQ-DVKHVVWHPSQELLASASYDDTVKLYRE 179 (345)
T ss_dssp CC-CSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCS-CEEEEEECSSSSCEEEEETTSCEEEEEE
T ss_pred cC-CCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCC-CeEEEEECCCCCEEEEEeCCCcEEEEEe
Confidence 88 99999999 99999999999999999999998763 4566778855 8999999999999999999999999998
Q ss_pred CCc
Q 028802 153 DDI 155 (203)
Q Consensus 153 ~~~ 155 (203)
++.
T Consensus 180 ~~~ 182 (345)
T 3fm0_A 180 EED 182 (345)
T ss_dssp ETT
T ss_pred cCC
Confidence 765
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-29 Score=190.18 Aligned_cols=152 Identities=13% Similarity=0.140 Sum_probs=120.7
Q ss_pred CcccccCCEEEEE--cCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc------
Q 028802 1 MTFAADAMKLLGT--SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC------ 72 (203)
Q Consensus 1 l~~sp~~~~l~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~------ 72 (203)
++|||||++|+++ +.|++|+|||+.+++.+..+. |...|.+++|+|+|++|++++.++ +.+|+.......
T Consensus 139 v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~ 216 (365)
T 4h5i_A 139 VYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDF 216 (365)
T ss_dssp EEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCC
T ss_pred EEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecC
Confidence 4799999987654 478999999999998887775 556788888888888888877554 444433221000
Q ss_pred ---------------------------------------------ceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEE
Q 028802 73 ---------------------------------------------SDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISL 106 (203)
Q Consensus 73 ---------------------------------------------~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v 106 (203)
...+.. |...|.++ |+|+|++|++|+.|+.|+|
T Consensus 217 ~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~V~~~~~Spdg~~lasgs~D~~V~i 295 (365)
T 4h5i_A 217 DKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTN-RFKGITSMDVDMKGELAVLASNDNSIAL 295 (365)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEES-SCSCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred CCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecC-CCCCeEeEEECCCCCceEEEcCCCEEEE
Confidence 011234 56678899 9999999999999999999
Q ss_pred EEccCCceeeee-ccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 107 VGILPNRIIQPI-AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 107 ~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
||+++++++..+ .+|.. +|++++|+|||++||+++.|++|+||++....
T Consensus 296 wd~~~~~~~~~~~~gH~~-~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 296 VKLKDLSMSKIFKQAHSF-AITEVTISPDSTYVASVSAANTIHIIKLPLNY 345 (365)
T ss_dssp EETTTTEEEEEETTSSSS-CEEEEEECTTSCEEEEEETTSEEEEEECCTTT
T ss_pred EECCCCcEEEEecCcccC-CEEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Confidence 999999998875 68855 89999999999999999999999999996543
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-28 Score=184.51 Aligned_cols=155 Identities=20% Similarity=0.296 Sum_probs=139.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcc---ccceeee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK---DCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~---~~~~~~~ 77 (203)
|+|+|++++|++|+.|++|++||+.++..+..+..|...|.+++|+|++++|++++.|+.+++|++.... .....+.
T Consensus 61 ~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~ 140 (340)
T 1got_B 61 MHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA 140 (340)
T ss_dssp EEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEE
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEec
Confidence 4799999999999999999999999999889999999999999999999999999999999999997532 2345677
Q ss_pred cCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+ |...+.++ |++++. +++++.|+.|++||+.+++.+..+.+|.. .|.+++|+|++++|++++.|+.|++||++++.
T Consensus 141 ~-h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~ 217 (340)
T 1got_B 141 G-HTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTG-DVMSLSLAPDTRLFVSGACDASAKLWDVREGM 217 (340)
T ss_dssp C-CSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCS
T ss_pred C-CCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEECCCCe
Confidence 8 89999999 887765 88999999999999999999999999965 89999999999999999999999999998875
Q ss_pred cC
Q 028802 157 KG 158 (203)
Q Consensus 157 ~~ 158 (203)
..
T Consensus 218 ~~ 219 (340)
T 1got_B 218 CR 219 (340)
T ss_dssp EE
T ss_pred eE
Confidence 43
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-28 Score=187.23 Aligned_cols=152 Identities=19% Similarity=0.307 Sum_probs=133.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|+.|++||+.. +.....+. +
T Consensus 129 v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~--~ 205 (393)
T 1erj_A 129 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT-GQCSLTLS--I 205 (393)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEEE--C
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCC-CeeEEEEE--c
Confidence 47999999999999999999999999999999999999999999999999999999999999999975 44444454 4
Q ss_pred CCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCceeeee-------ccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028802 81 PNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPI-------AEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 81 ~~~v~~~-~~~-~~~~l~~~~~dg~v~v~d~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 151 (203)
...+.++ ++| ++.+|++++.|+.|++||++++..+..+ .+|.. .|.+++|+|++++|++++.|+.|++||
T Consensus 206 ~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~d~~v~~wd 284 (393)
T 1erj_A 206 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD-SVYSVVFTRDGQSVVSGSLDRSVKLWN 284 (393)
T ss_dssp SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSS-CEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCC-CEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 5677888 888 8999999999999999999998877666 45644 899999999999999999999999999
Q ss_pred CCCcc
Q 028802 152 LDDIL 156 (203)
Q Consensus 152 ~~~~~ 156 (203)
+++..
T Consensus 285 ~~~~~ 289 (393)
T 1erj_A 285 LQNAN 289 (393)
T ss_dssp C----
T ss_pred CCCCC
Confidence 98754
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-28 Score=184.69 Aligned_cols=155 Identities=15% Similarity=0.178 Sum_probs=130.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEE----eecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT----RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~----~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 76 (203)
|+|+|++ .|++|+.||+|+|||+.+++.+. .+.+|...|++++|+|++++|++++.|+.|++||+.+ +.++..+
T Consensus 88 ~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~-~~~~~~~ 165 (344)
T 4gqb_B 88 LTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ-QVVLSSY 165 (344)
T ss_dssp EEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEE
T ss_pred EEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC-CcEEEEE
Confidence 4789985 67899999999999999875433 3458999999999999999999999999999999975 5788889
Q ss_pred ecCCCCceeEE-EeeCCC-EEEEEcCCCcEEEEEccCCceeeeeccCC-CcceEEEEEeCC-CCeEEEEeCCCcEEEEeC
Q 028802 77 VGLSPNSVDAL-LKLDED-RVITGSENGLISLVGILPNRIIQPIAEHS-EYPIESLALSHD-RKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~-~l~~~~~dg~v~v~d~~~~~~~~~~~~~~-~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~ 152 (203)
.+ |...|.++ |+|++. ++++++.|+.|++||++++++...+..+. ...+.+++|+|+ +++|++++.|+.|++||+
T Consensus 166 ~~-h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~ 244 (344)
T 4gqb_B 166 RA-HAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDT 244 (344)
T ss_dssp CC-CSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEES
T ss_pred cC-cCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEEC
Confidence 99 99999999 999875 78899999999999999998887764332 236899999995 567889999999999999
Q ss_pred CCcccC
Q 028802 153 DDILKG 158 (203)
Q Consensus 153 ~~~~~~ 158 (203)
+++.+.
T Consensus 245 ~~~~~~ 250 (344)
T 4gqb_B 245 KSTSCV 250 (344)
T ss_dssp CC--CC
T ss_pred CCCcEE
Confidence 987654
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=182.49 Aligned_cols=155 Identities=17% Similarity=0.301 Sum_probs=139.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEee--CCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
++|+|+++.|++++.|++|++||+.+++.+..+.+|...|.+++|+| ++++|++++.|+.|++||++. +.++..+..
T Consensus 160 ~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~-~~~~~~~~~ 238 (354)
T 2pbi_B 160 CSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS-GQCVQAFET 238 (354)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT-CCEEEEECC
T ss_pred EEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC-CcEEEEecC
Confidence 46899999999999999999999999999999999999999999987 568999999999999999985 567788888
Q ss_pred CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC-CcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS-EYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
|...|.++ |+|++.+|++++.|+.|++||++.++.+..+..+. ...+.+++|+|++++|++++.|+.|++||+.++.
T Consensus 239 -h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~ 317 (354)
T 2pbi_B 239 -HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS 317 (354)
T ss_dssp -CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS
T ss_pred -CCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc
Confidence 99999999 99999999999999999999999887776665432 2368999999999999999999999999997765
Q ss_pred c
Q 028802 157 K 157 (203)
Q Consensus 157 ~ 157 (203)
.
T Consensus 318 ~ 318 (354)
T 2pbi_B 318 R 318 (354)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=181.66 Aligned_cols=149 Identities=17% Similarity=0.237 Sum_probs=131.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee---e
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF---V 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~ 77 (203)
++|+|++.+|++++.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.. ...... .
T Consensus 82 ~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~--~~~~~~~~~~ 159 (343)
T 2xzm_R 82 LALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG--ECKFSSAEKE 159 (343)
T ss_dssp EEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS--CEEEECCTTT
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC--Cceeeeeccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999863 222222 2
Q ss_pred cCCCCceeEE-EeeCC----------CEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCc
Q 028802 78 GLSPNSVDAL-LKLDE----------DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSM 146 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~----------~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 146 (203)
. |...+.++ |+|++ .++++++.|+.|++|| ...+....+..|.. .|.+++|+|++++|++++.|+.
T Consensus 160 ~-~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~-~v~~~~~s~~g~~l~sgs~dg~ 236 (343)
T 2xzm_R 160 N-HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHES-NVNHLSISPNGKYIATGGKDKK 236 (343)
T ss_dssp S-CSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSS-CEEEEEECTTSSEEEEEETTCE
T ss_pred C-CCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccc-cceEEEECCCCCEEEEEcCCCe
Confidence 5 77789999 88886 7899999999999999 45667778888855 8999999999999999999999
Q ss_pred EEEEeCCC
Q 028802 147 LKLWDLDD 154 (203)
Q Consensus 147 i~iwd~~~ 154 (203)
|++||+.+
T Consensus 237 v~iwd~~~ 244 (343)
T 2xzm_R 237 LLIWDILN 244 (343)
T ss_dssp EEEEESSC
T ss_pred EEEEECCC
Confidence 99999954
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-28 Score=184.69 Aligned_cols=156 Identities=23% Similarity=0.251 Sum_probs=136.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCC-EEEEecCCCeEEEEEcCCccccceee--e
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSDRF--V 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~--~ 77 (203)
|+|+|++++|++|+.|+.|++||+.+++.+..+..|...|.+++|+|++. ++++++.|+.|++||++.. .....+ .
T Consensus 145 v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~-~~~~~~~~~ 223 (357)
T 4g56_B 145 LSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKP-KPATRIDFC 223 (357)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSS-SCBCBCCCT
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCC-ceeeeeeec
Confidence 57999999999999999999999999999999999999999999999874 7889999999999999753 333333 3
Q ss_pred cCCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCC-CeEEEEeCCCcEEEEeCCC
Q 028802 78 GLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~-~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~ 154 (203)
. +...+.++ |+|+ +.+|++|+.++.|++||+++++++..+.+|.. .|++++|+|++ ++|++++.|+.|+|||+++
T Consensus 224 ~-~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~ 301 (357)
T 4g56_B 224 A-SDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQ-NITGLAYSYHSSPFLASISEDCTVAVLDADF 301 (357)
T ss_dssp T-CCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTS
T ss_pred c-ccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccce-eEEEEEEcCCCCCEEEEEeCCCEEEEEECCC
Confidence 3 56678888 9997 56888999999999999999999999999865 89999999987 5789999999999999988
Q ss_pred cccCC
Q 028802 155 ILKGS 159 (203)
Q Consensus 155 ~~~~~ 159 (203)
++...
T Consensus 302 ~~~~~ 306 (357)
T 4g56_B 302 SEVFR 306 (357)
T ss_dssp CEEEE
T ss_pred CcEeE
Confidence 76543
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-28 Score=186.48 Aligned_cols=152 Identities=21% Similarity=0.289 Sum_probs=130.4
Q ss_pred cccc-cCCEEEEEcCCCeEEEEEcC-CCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 2 TFAA-DAMKLLGTSGDGTLSVCNLR-KNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp-~~~~l~~~~~d~~i~v~d~~-~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
+|+| ++++|++|+.|++|++||++ .+..+..+.+|...|.+++|+|++.+|++++.|++|++||++. +..+..+..
T Consensus 212 ~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~-~~~~~~~~~- 289 (380)
T 3iz6_a 212 SINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT-GHQLQVYNR- 289 (380)
T ss_dssp EECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTT-TEEEEEECC-
T ss_pred EeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCC-CcEEEEecc-
Confidence 4555 78999999999999999998 4567788899999999999999999999999999999999985 444444433
Q ss_pred C-------CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeee----ccCCCcceEEEEEeCCCCeEEEEeCCCcE
Q 028802 80 S-------PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI----AEHSEYPIESLALSHDRKFLGSISHDSML 147 (203)
Q Consensus 80 ~-------~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 147 (203)
+ ...+.++ |+|+|.++++|+.+|.|++||+..++.+..+ .+|.. .|.+++|+|+|++|++++.|+.|
T Consensus 290 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~-~v~~l~~s~dg~~l~sgs~D~~i 368 (380)
T 3iz6_a 290 EPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEG-RISCLGLSSDGSALCTGSWDKNL 368 (380)
T ss_dssp CCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCC-CCCEEEECSSSSEEEEECTTSCE
T ss_pred cccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCC-ceEEEEECCCCCEEEEeeCCCCE
Confidence 2 2247888 9999999999999999999999988877666 56754 89999999999999999999999
Q ss_pred EEEeCCCcc
Q 028802 148 KLWDLDDIL 156 (203)
Q Consensus 148 ~iwd~~~~~ 156 (203)
++|++....
T Consensus 369 ~iW~~~~~~ 377 (380)
T 3iz6_a 369 KIWAFSGHR 377 (380)
T ss_dssp EEEECCSSS
T ss_pred EEEecCCCc
Confidence 999997653
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-27 Score=182.87 Aligned_cols=148 Identities=18% Similarity=0.229 Sum_probs=130.7
Q ss_pred cccc--cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-
Q 028802 2 TFAA--DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG- 78 (203)
Q Consensus 2 ~~sp--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~- 78 (203)
+|+| ++++|++|+.|+.|++||+++++++..+..|...|.+++|+|++.+|++++.|+.|++||++.. ..+..+..
T Consensus 203 ~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~-~~~~~~~~~ 281 (354)
T 2pbi_B 203 DLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD-REVAIYSKE 281 (354)
T ss_dssp EECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCT
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC-cEEEEEcCC
Confidence 4555 5789999999999999999999999999999999999999999999999999999999999753 34444432
Q ss_pred CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028802 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 151 (203)
.+...+.++ |+|++.++++++.|+.|++||+.+++.+..+.+|.. .|++++|+|++++|++++.|+.|++|+
T Consensus 282 ~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~-~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 282 SIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN-RVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS-CEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCC-cEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 023457778 999999999999999999999999999999999965 899999999999999999999999996
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=177.38 Aligned_cols=154 Identities=14% Similarity=0.152 Sum_probs=131.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC--CeEEEeecCCcccEEEEEEeeC--CCEEEEecCCCeEEEEEcCCcc-cccee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRK--NTVQTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFK-DCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~--~~~~~~~~~~~~~i~~l~~~~~--~~~l~~~~~d~~i~v~d~~~~~-~~~~~ 75 (203)
++|+|+|++|++|+.|++|+||++.. .+.+..+.+|..+|.+++|+|+ +++|++++.|++|++||+.... ..+..
T Consensus 15 ~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~ 94 (297)
T 2pm7_B 15 AVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAV 94 (297)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEE
T ss_pred EEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEE
Confidence 47999999999999999999999974 3567889999999999999864 8999999999999999997532 34556
Q ss_pred eecCCCCceeEE-EeeC--CCEEEEEcCCCcEEEEEccCCce--eeeeccCCCcceEEEEEeCC-------------CCe
Q 028802 76 FVGLSPNSVDAL-LKLD--EDRVITGSENGLISLVGILPNRI--IQPIAEHSEYPIESLALSHD-------------RKF 137 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~--~~~l~~~~~dg~v~v~d~~~~~~--~~~~~~~~~~~i~~~~~~~~-------------~~~ 137 (203)
+.. |...|.++ |+|+ +.+|++++.|+.|++||++++.. ...+.+|.. .|.+++|+|+ +++
T Consensus 95 ~~~-h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~~~~~~~~~~~~~ 172 (297)
T 2pm7_B 95 HAV-HSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAI-GVNSASWAPATIEEDGEHNGTKESRK 172 (297)
T ss_dssp ECC-CSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSS-CEEEEEECCCC------------CCE
T ss_pred eec-CCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccC-ccceEeecCCcccccccCCCCCCcce
Confidence 677 88999999 9997 89999999999999999987532 345677755 8999999997 579
Q ss_pred EEEEeCCCcEEEEeCCCcc
Q 028802 138 LGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 138 l~~~~~d~~i~iwd~~~~~ 156 (203)
|++++.|+.|++||+++..
T Consensus 173 l~sgs~D~~v~lwd~~~~~ 191 (297)
T 2pm7_B 173 FVTGGADNLVKIWKYNSDA 191 (297)
T ss_dssp EEEEETTSCEEEEEEETTT
T ss_pred EEEEcCCCcEEEEEEcCCC
Confidence 9999999999999997654
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-27 Score=193.58 Aligned_cols=154 Identities=18% Similarity=0.228 Sum_probs=136.0
Q ss_pred CcccccCC-EEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee--
Q 028802 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV-- 77 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-- 77 (203)
++|+|++. .|++|+.|++|++|+..+++....+.+|...|.+++|+|++++|++++.|+.|++||+.. +.....+.
T Consensus 153 v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~-g~~~~~~~~~ 231 (611)
T 1nr0_A 153 VDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD-GTKTGVFEDD 231 (611)
T ss_dssp EEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEECBCT
T ss_pred EEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCC-CcEeeeeccc
Confidence 47999987 699999999999999999998899999999999999999999999999999999999874 45555552
Q ss_pred -----cCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeee----------------------------------
Q 028802 78 -----GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQP---------------------------------- 117 (203)
Q Consensus 78 -----~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~---------------------------------- 117 (203)
+ |...|.++ |+|++++|++++.|+.|++||+.+++++..
T Consensus 232 ~~~~~~-h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~ 310 (611)
T 1nr0_A 232 SLKNVA-HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 310 (611)
T ss_dssp TSSSCS-SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEE
T ss_pred cccccc-cCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEe
Confidence 6 88999999 999999999999999999999987765433
Q ss_pred ---------eccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028802 118 ---------IAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 118 ---------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
+.+|.. .|.+++|+|++++|++++.|+.|++||+.++..
T Consensus 311 ~~~~~~~~~~~gh~~-~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~ 358 (611)
T 1nr0_A 311 PELGSIDQVRYGHNK-AITALSSSADGKTLFSADAEGHINSWDISTGIS 358 (611)
T ss_dssp TTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred CCCCCcceEEcCCCC-CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce
Confidence 345644 899999999999999999999999999988654
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-27 Score=192.04 Aligned_cols=145 Identities=21% Similarity=0.356 Sum_probs=134.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++++.|++|++|+. +++.+..+.+|...|.+++|+|++++|++++.|+.|++|+.. +..+..+.+ |
T Consensus 432 ~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~--~~~~~~~~~-h 507 (577)
T 2ymu_A 432 VAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTG-H 507 (577)
T ss_dssp EEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT--SCEEEEEEC-C
T ss_pred EEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC--CCEEEEEeC-C
Confidence 479999999999999999999996 456778888999999999999999999999999999999964 577888999 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 151 (203)
...|.++ |+|++++|++++.|+.|++||. +++++..+.+|.. .|++++|+||+++|++++.|++|++||
T Consensus 508 ~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~-~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 508 SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS-SVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSS-CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCC-CEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 9999999 9999999999999999999995 6888899999965 899999999999999999999999997
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.5e-27 Score=174.63 Aligned_cols=153 Identities=16% Similarity=0.223 Sum_probs=130.7
Q ss_pred Cccccc--CCEEEEEcCCCeEEEEEcCCCe--EEEeecCCcccEEEEEEeeC--CCEEEEecCCCeEEEEEcCCccc-cc
Q 028802 1 MTFAAD--AMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFKD-CS 73 (203)
Q Consensus 1 l~~sp~--~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~i~~l~~~~~--~~~l~~~~~d~~i~v~d~~~~~~-~~ 73 (203)
|+|+|+ +++|++|+.|++|++||+.++. .+..+..|...|.+++|+|+ +.+|++++.|+.|++||+..... ..
T Consensus 59 v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~ 138 (297)
T 2pm7_B 59 VDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP 138 (297)
T ss_dssp EEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC
T ss_pred EEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee
Confidence 467763 8999999999999999998763 45667789999999999997 89999999999999999975422 23
Q ss_pred eeeecCCCCceeEE-EeeC-------------CCEEEEEcCCCcEEEEEccCCc----eeeeeccCCCcceEEEEEeCCC
Q 028802 74 DRFVGLSPNSVDAL-LKLD-------------EDRVITGSENGLISLVGILPNR----IIQPIAEHSEYPIESLALSHDR 135 (203)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~~-------------~~~l~~~~~dg~v~v~d~~~~~----~~~~~~~~~~~~i~~~~~~~~~ 135 (203)
..+.+ |...+.++ |+|+ +++|++++.|+.|++||++++. ....+.+|.. .|.+++|+|++
T Consensus 139 ~~~~~-h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~-~V~~v~~sp~~ 216 (297)
T 2pm7_B 139 IIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTV 216 (297)
T ss_dssp EEEEC-CSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCC
T ss_pred eeeec-ccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCC-ceEEEEECCCC
Confidence 55677 88999999 9986 5799999999999999998765 5667888865 89999999985
Q ss_pred ---CeEEEEeCCCcEEEEeCCCc
Q 028802 136 ---KFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 136 ---~~l~~~~~d~~i~iwd~~~~ 155 (203)
.+|++++.|+.|++||+++.
T Consensus 217 ~~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 217 LLRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp SSSEEEEEEETTSCEEEEEESST
T ss_pred CCceEEEEEECCCcEEEEEeCCC
Confidence 78999999999999999764
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-27 Score=178.16 Aligned_cols=150 Identities=19% Similarity=0.202 Sum_probs=123.9
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCC--eEEEee-cC-CcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCc------cc
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKN--TVQTRS-EF-SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF------KD 71 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~--~~~~~~-~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~------~~ 71 (203)
+|+|+ +|++|+.|++|++|++..+ .....+ .. |...|.+++|+|++++|++++.|+.|++|++... ..
T Consensus 21 ~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~ 98 (330)
T 2hes_X 21 DFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMD 98 (330)
T ss_dssp EEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCE
T ss_pred ccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccce
Confidence 56666 9999999999999999875 445555 44 8999999999999999999999999999998521 23
Q ss_pred cceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC----CceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCc
Q 028802 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP----NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSM 146 (203)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 146 (203)
.+..+.+ |...|.++ |+|++++|++++.|+.|++||++. .+++..+.+|.. .|.+++|+|++.+|++++.|+.
T Consensus 99 ~~~~~~~-h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~ 176 (330)
T 2hes_X 99 LLAIIEG-HENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQ-DVKHVIWHPSEALLASSSYDDT 176 (330)
T ss_dssp EEEEEC-----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSS-CEEEEEECSSSSEEEEEETTSC
T ss_pred eEEEEcC-CCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCC-ceEEEEECCCCCEEEEEcCCCe
Confidence 4566778 99999999 999999999999999999999943 245677888855 8999999999999999999999
Q ss_pred EEEEeCCCc
Q 028802 147 LKLWDLDDI 155 (203)
Q Consensus 147 i~iwd~~~~ 155 (203)
|++||+.+.
T Consensus 177 i~iW~~~~~ 185 (330)
T 2hes_X 177 VRIWKDYDD 185 (330)
T ss_dssp EEEEEEETT
T ss_pred EEEEECCCC
Confidence 999998654
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-27 Score=191.48 Aligned_cols=154 Identities=16% Similarity=0.199 Sum_probs=130.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC--eEEEe--------------------------------------------ec
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKN--TVQTR--------------------------------------------SE 34 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~--~~~~~--------------------------------------------~~ 34 (203)
++|||+|++||+|+.|++|+|||+.++ ..... +.
T Consensus 65 ~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~ 144 (611)
T 1nr0_A 65 AKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLT 144 (611)
T ss_dssp EEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCC
T ss_pred EEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceec
Confidence 579999999999999999999998532 11112 23
Q ss_pred CCcccEEEEEEeeCCC-EEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC
Q 028802 35 FSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN 112 (203)
Q Consensus 35 ~~~~~i~~l~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~ 112 (203)
+|...|.+++|+|++. .|++++.|+.|++||... ......+.+ |...|.++ |+|++++|++++.|+.|++||+.++
T Consensus 145 gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~-~~~~~~l~~-H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g 222 (611)
T 1nr0_A 145 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP-FKFKSTFGE-HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG 222 (611)
T ss_dssp CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT-BEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred CCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCC-CeEeeeecc-ccCceEEEEECCCCCEEEEEECCCcEEEEECCCC
Confidence 4566677777777765 588899999999999864 466778888 99999999 9999999999999999999999999
Q ss_pred ceeeeec-------cCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028802 113 RIIQPIA-------EHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 113 ~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
+.+..+. +|.. .|.+++|+|++++|++++.|++|++||+.++..
T Consensus 223 ~~~~~~~~~~~~~~~h~~-~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~ 273 (611)
T 1nr0_A 223 TKTGVFEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKV 273 (611)
T ss_dssp CEEEECBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred cEeeeeccccccccccCC-CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCce
Confidence 8887774 6755 899999999999999999999999999987654
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-27 Score=180.52 Aligned_cols=156 Identities=18% Similarity=0.220 Sum_probs=136.7
Q ss_pred Cccccc-CCEEEEEcCCCeEEEEEcCCCeEEEee-----cCCcccEEEEEEee-CCCEEEEecCCCeEEEEEcCCccccc
Q 028802 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRS-----EFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCS 73 (203)
Q Consensus 1 l~~sp~-~~~l~~~~~d~~i~v~d~~~~~~~~~~-----~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~ 73 (203)
+.|+|+ +..|++|+.|++|++||+.+++.+..+ .+|...|.+++|++ ++.+|++++.|+.|++||++.....+
T Consensus 163 ~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~ 242 (380)
T 3iz6_a 163 CQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAV 242 (380)
T ss_dssp CBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCC
T ss_pred EEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcce
Confidence 357776 457999999999999999999887766 57888999999987 88999999999999999998656777
Q ss_pred eeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCC------cceEEEEEeCCCCeEEEEeCCCc
Q 028802 74 DRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE------YPIESLALSHDRKFLGSISHDSM 146 (203)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~~~~~d~~ 146 (203)
..+.+ |...|.++ |+|++.+|++++.|+.|++||++++..+..+..+.. ..|++++|+|+|++|++++.||.
T Consensus 243 ~~~~~-h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~ 321 (380)
T 3iz6_a 243 RTYHG-HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD 321 (380)
T ss_dssp EEECC-CSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSC
T ss_pred EEECC-cCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCC
Confidence 88888 99999999 999999999999999999999999988877765422 13889999999999999999999
Q ss_pred EEEEeCCCccc
Q 028802 147 LKLWDLDDILK 157 (203)
Q Consensus 147 i~iwd~~~~~~ 157 (203)
|++||+.++..
T Consensus 322 i~vwd~~~~~~ 332 (380)
T 3iz6_a 322 CYVWDTLLAEM 332 (380)
T ss_dssp EEEEETTTCCE
T ss_pred EEEEECCCCce
Confidence 99999876653
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.7e-27 Score=181.44 Aligned_cols=153 Identities=18% Similarity=0.305 Sum_probs=133.7
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCCeEEEee-------cCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCc---
Q 028802 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRS-------EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF--- 69 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~v~d~~~~~~~~~~-------~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~--- 69 (203)
++|+| ++++|++|+.|+.|++||+.++..+..+ .+|...|.+++|+|++.+|++++.|+.|++||+...
T Consensus 212 ~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~ 291 (393)
T 1erj_A 212 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK 291 (393)
T ss_dssp EEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCc
Confidence 36888 8999999999999999999998777666 578899999999999999999999999999999642
Q ss_pred --------cccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeC------C
Q 028802 70 --------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH------D 134 (203)
Q Consensus 70 --------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~------~ 134 (203)
..+...+.+ |...+.++ |+|++.+|++++.|+.|++||+.+++++..+.+|.. .|.+++|++ +
T Consensus 292 ~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~-~v~~v~~~~~~~~~p~ 369 (393)
T 1erj_A 292 SDSKTPNSGTCEVTYIG-HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN-SVISVAVANGSSLGPE 369 (393)
T ss_dssp ---------CEEEEEEC-CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEECSSCTTCTT
T ss_pred ccccCCCCCcceEEEec-ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC-CEEEEEecCCcCcCCC
Confidence 123445677 88899999 999999999999999999999999999999999965 899999886 6
Q ss_pred CCeEEEEeCCCcEEEEeCCCc
Q 028802 135 RKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 135 ~~~l~~~~~d~~i~iwd~~~~ 155 (203)
+++|++++.|+.|++|++...
T Consensus 370 ~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 370 YNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp CEEEEEEETTSEEEEEEEEEC
T ss_pred CCEEEEECCCCcEEECccccc
Confidence 789999999999999998654
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-27 Score=180.98 Aligned_cols=152 Identities=17% Similarity=0.212 Sum_probs=129.3
Q ss_pred CcccccCC-EEEEEcCCCeEEEEEcCCCeEEEeec--CCcccEEEEEEeeC-CCEEEEecCCCeEEEEEcCCccccceee
Q 028802 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~i~~l~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 76 (203)
|+|+|++. ++++++.|+.|++||+++++....+. .+...+.+++|+|+ +.+|++++.|+.|++||+.. +..+..+
T Consensus 187 v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~-~~~~~~~ 265 (357)
T 4g56_B 187 VAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN-PDSAQTS 265 (357)
T ss_dssp EEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC-GGGCEEE
T ss_pred EEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCC-CcEeEEE
Confidence 46888875 78999999999999999887665543 46678999999997 46889999999999999985 5677888
Q ss_pred ecCCCCceeEE-EeeCC-CEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeC-CCCeEEEEeCCCcEEEEeCC
Q 028802 77 VGLSPNSVDAL-LKLDE-DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~-~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~ 153 (203)
.. +...|.++ |+|++ ++|++++.|+.|+|||+++++++..+ +|.. .|++++|+| ++.+|++++.|+.|++|++.
T Consensus 266 ~~-~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~-~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 266 AV-HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRD-FVTGVAWSPLDHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp CC-CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSS-CEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred ec-cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCC-CEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence 88 99999999 99987 57899999999999999998877655 6755 899999999 78999999999999999997
Q ss_pred Ccc
Q 028802 154 DIL 156 (203)
Q Consensus 154 ~~~ 156 (203)
+..
T Consensus 343 ~~~ 345 (357)
T 4g56_B 343 SEG 345 (357)
T ss_dssp ---
T ss_pred CCC
Confidence 643
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-27 Score=193.44 Aligned_cols=155 Identities=19% Similarity=0.224 Sum_probs=138.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce---eee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD---RFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~---~~~ 77 (203)
++|+|++++|++|+.|++|+|||+.++..+..+.+|...|.+++|+|++++|++++.|++|++||+... .... ...
T Consensus 436 v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~-~~~~~~~~~~ 514 (694)
T 3dm0_A 436 VVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE-CKYTISEGGE 514 (694)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC-EEEEECSSTT
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC-cceeeccCCC
Confidence 478999999999999999999999999999999999999999999999999999999999999998532 1111 123
Q ss_pred cCCCCceeEE-EeeCC--CEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 78 GLSPNSVDAL-LKLDE--DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~--~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
+ |...+.++ |+|++ ..+++++.|+.|++||+++++....+.+|.. .|++++|+|++++|++++.|+.|++||+++
T Consensus 515 ~-h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~-~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~ 592 (694)
T 3dm0_A 515 G-HRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTG-YVSTVAVSPDGSLCASGGKDGVVLLWDLAE 592 (694)
T ss_dssp S-CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSBCEEEETTT
T ss_pred C-CCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence 5 77789999 99976 6899999999999999999999999999965 899999999999999999999999999988
Q ss_pred cccC
Q 028802 155 ILKG 158 (203)
Q Consensus 155 ~~~~ 158 (203)
+...
T Consensus 593 ~~~~ 596 (694)
T 3dm0_A 593 GKKL 596 (694)
T ss_dssp TEEE
T ss_pred CceE
Confidence 7654
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.5e-28 Score=184.95 Aligned_cols=153 Identities=13% Similarity=0.097 Sum_probs=129.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC--eEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcc--ccceee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKN--TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--DCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~--~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~ 76 (203)
++|+|++++|++++.|+.|++|++.++ +.+..+.+|...|.+++|+|++++|++++.|+.|++||+.... .....+
T Consensus 17 ~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~ 96 (377)
T 3dwl_C 17 HAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVL 96 (377)
T ss_dssp CEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEEC
T ss_pred EEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEe
Confidence 589999999999999999999999988 6778888999999999999999999999999999999997532 245556
Q ss_pred ecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc---eeeeecc-CCCcceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028802 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR---IIQPIAE-HSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~---~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 151 (203)
.. |...+.++ |+|++++|++++.|+.|++||+++++ ....+.. |.. .|.+++|+|++++|++++.|+.|++||
T Consensus 97 ~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~~~~~d~~i~iwd 174 (377)
T 3dwl_C 97 LR-LNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS-TILSLDWHPNNVLLAAGCADRKAYVLS 174 (377)
T ss_dssp CC-CSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCS-CEEEEEECTTSSEEEEEESSSCEEEEE
T ss_pred cc-cCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCC-CeEEEEEcCCCCEEEEEeCCCEEEEEE
Confidence 67 88999999 99999999999999999999999876 3666776 744 899999999999999999999999999
Q ss_pred CCCc
Q 028802 152 LDDI 155 (203)
Q Consensus 152 ~~~~ 155 (203)
+.+.
T Consensus 175 ~~~~ 178 (377)
T 3dwl_C 175 AYVR 178 (377)
T ss_dssp ECCS
T ss_pred EEec
Confidence 9643
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-27 Score=182.58 Aligned_cols=155 Identities=18% Similarity=0.297 Sum_probs=133.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
|+|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|+.|++||+.. +..+..+.. +
T Consensus 145 ~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~-~ 222 (420)
T 3vl1_A 145 LKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT-GTTIHTFNR-K 222 (420)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-TEEEEEECB-T
T ss_pred EEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCC-CceeEEeec-C
Confidence 57999999999999999999999999988889999999999999999999999999999999999975 455555542 2
Q ss_pred ------------------------CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCC
Q 028802 81 ------------------------PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR 135 (203)
Q Consensus 81 ------------------------~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 135 (203)
...+.++ |+|++++|++++.+|.|++||+++++.+..+.......|.+++|+|++
T Consensus 223 ~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 302 (420)
T 3vl1_A 223 ENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNN 302 (420)
T ss_dssp TBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSC
T ss_pred CCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCC
Confidence 2344445 678999999999999999999999887777654324489999999999
Q ss_pred C-eEEEEeCCCcEEEEeCCCccc
Q 028802 136 K-FLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 136 ~-~l~~~~~d~~i~iwd~~~~~~ 157 (203)
+ +|++++.|+.|++||++++..
T Consensus 303 ~~~l~~g~~dg~i~vwd~~~~~~ 325 (420)
T 3vl1_A 303 ANYIYAGYENGMLAQWDLRSPEC 325 (420)
T ss_dssp TTEEEEEETTSEEEEEETTCTTS
T ss_pred CCEEEEEeCCCeEEEEEcCCCcC
Confidence 8 999999999999999988643
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=174.30 Aligned_cols=155 Identities=18% Similarity=0.248 Sum_probs=133.1
Q ss_pred Ccccc--cCCEEEEEcCCCeEEEEEcCCC---------eEEEeecCCcccEEEEEEeeC--CCEEEEecCCCeEEEEEcC
Q 028802 1 MTFAA--DAMKLLGTSGDGTLSVCNLRKN---------TVQTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 1 l~~sp--~~~~l~~~~~d~~i~v~d~~~~---------~~~~~~~~~~~~i~~l~~~~~--~~~l~~~~~d~~i~v~d~~ 67 (203)
|+|+| ++++|++++.|+.|++||+.++ +.+..+..|...|.+++|+|+ +.+|++++.|+.|++||+.
T Consensus 63 ~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 142 (351)
T 3f3f_A 63 IDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142 (351)
T ss_dssp EEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECS
T ss_pred EEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCC
Confidence 46888 6999999999999999999876 567788899999999999999 9999999999999999986
Q ss_pred Cccc-----------------------------------------------------------cceeeecCCCCceeEE-
Q 028802 68 YFKD-----------------------------------------------------------CSDRFVGLSPNSVDAL- 87 (203)
Q Consensus 68 ~~~~-----------------------------------------------------------~~~~~~~~~~~~v~~~- 87 (203)
.... .+..+.. |...|.++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~ 221 (351)
T 3f3f_A 143 EPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPG-HKSLIRSIS 221 (351)
T ss_dssp STTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCC-CCSCEEEEE
T ss_pred ChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCC-CCcceeEEE
Confidence 4211 0223445 77889999
Q ss_pred EeeCC----CEEEEEcCCCcEEEEEccCC----------------------------------------------ceeee
Q 028802 88 LKLDE----DRVITGSENGLISLVGILPN----------------------------------------------RIIQP 117 (203)
Q Consensus 88 ~~~~~----~~l~~~~~dg~v~v~d~~~~----------------------------------------------~~~~~ 117 (203)
|+|++ .+|++++.||.|++||++.+ +.+..
T Consensus 222 ~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (351)
T 3f3f_A 222 WAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSE 301 (351)
T ss_dssp ECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEE
T ss_pred ECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEE
Confidence 99998 89999999999999999875 56667
Q ss_pred eccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028802 118 IAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 118 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
+.+|.. .|++++|+|++++|++++.|+.|++|++.++..
T Consensus 302 ~~~h~~-~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 302 HDDHNG-EVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp ECTTSS-CEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred Eecccc-cEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence 778855 899999999999999999999999999987643
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=173.93 Aligned_cols=153 Identities=20% Similarity=0.267 Sum_probs=135.3
Q ss_pred CcccccC-CEEEEEcCCCeEEEEEcCC-----CeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce
Q 028802 1 MTFAADA-MKLLGTSGDGTLSVCNLRK-----NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~-~~l~~~~~d~~i~v~d~~~-----~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~ 74 (203)
|+|+|++ ++|++|+.|++|++|++.. +.++..+.+|...|.+++|+|++.+|++++.|+.|++||+.+ +..+.
T Consensus 23 l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~-~~~~~ 101 (319)
T 3frx_A 23 LATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT-GETYQ 101 (319)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEE
T ss_pred EEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCC-CCeeE
Confidence 4688865 8999999999999999864 345678889999999999999999999999999999999975 57778
Q ss_pred eeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCC------CCeEEEEeCCCcE
Q 028802 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHD------RKFLGSISHDSML 147 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~l~~~~~d~~i 147 (203)
.+.+ |...|.++ |+|++.+|++++.|+.|++||++ +..+..+.+|.. .|.++.|+|. +..|++++.|+.|
T Consensus 102 ~~~~-h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~l~s~~~d~~i 178 (319)
T 3frx_A 102 RFVG-HKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHND-WVSQVRVVPNEKADDDSVTIISAGNDKMV 178 (319)
T ss_dssp EEEC-CSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSS-CEEEEEECCC------CCEEEEEETTSCE
T ss_pred EEcc-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCC-cEEEEEEccCCCCCCCccEEEEEeCCCEE
Confidence 8899 99999999 99999999999999999999986 567778888865 8999999985 4489999999999
Q ss_pred EEEeCCCccc
Q 028802 148 KLWDLDDILK 157 (203)
Q Consensus 148 ~iwd~~~~~~ 157 (203)
++||+++...
T Consensus 179 ~~wd~~~~~~ 188 (319)
T 3frx_A 179 KAWNLNQFQI 188 (319)
T ss_dssp EEEETTTTEE
T ss_pred EEEECCcchh
Confidence 9999987654
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.95 E-value=8.8e-27 Score=174.18 Aligned_cols=148 Identities=13% Similarity=0.088 Sum_probs=116.5
Q ss_pred cccc---cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCc---ccEEEEEEeeCCCEE------------EEecCCCeEEE
Q 028802 2 TFAA---DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSE---EELTSVVLMKNGRKV------------VCGSQSGTVLL 63 (203)
Q Consensus 2 ~~sp---~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~---~~i~~l~~~~~~~~l------------~~~~~d~~i~v 63 (203)
+|+| ++.+|++++.|++|+|||+.+++++.++.+|. ..+.+++|+|++.++ ++|+.|++|++
T Consensus 185 ~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIkl 264 (356)
T 2w18_A 185 TFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIV 264 (356)
T ss_dssp EEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEE
T ss_pred EeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEE
Confidence 5677 66889999999999999999999999997643 357788999999876 45778999999
Q ss_pred EEcCCccccceee-----ecCCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeE
Q 028802 64 YSWGYFKDCSDRF-----VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFL 138 (203)
Q Consensus 64 ~d~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 138 (203)
||..+ +..+..+ .+ |...+.+ .+.++.++++++.|++|+|||+.+++++.++.+|....+.+++|+|||++|
T Consensus 265 Wd~~t-gk~l~v~~~~~p~G-h~~~~ls-g~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~L 341 (356)
T 2w18_A 265 INPKT-TLSVGVMLYCLPPG-QAGRFLE-GDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHL 341 (356)
T ss_dssp EETTT-TEEEEEEEECCCTT-CCCCEEE-EEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEE
T ss_pred EECCC-CEEEEEEEeeccCC-CcceeEc-cccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEE
Confidence 99975 4444433 23 4433322 344588999999999999999999999999998865345568999999999
Q ss_pred EEEeCCCcEEEEeC
Q 028802 139 GSISHDSMLKLWDL 152 (203)
Q Consensus 139 ~~~~~d~~i~iwd~ 152 (203)
++|+.|++|+|||+
T Consensus 342 aSGS~D~TIklWd~ 355 (356)
T 2w18_A 342 LAGQKDGNIFVYHY 355 (356)
T ss_dssp EEECTTSCEEEEEE
T ss_pred EEEECCCcEEEecC
Confidence 99999999999996
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.3e-27 Score=181.35 Aligned_cols=154 Identities=13% Similarity=0.164 Sum_probs=137.0
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCC
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 81 (203)
.|+|++++|++++.|+.|++|++.++.....+..|...|.+++|+|++++|++++.|+.|++||+.. +..+..+.+ |.
T Consensus 104 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~~-h~ 181 (420)
T 3vl1_A 104 TAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD-GSNPRTLIG-HR 181 (420)
T ss_dssp EECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-CCCCEEEEC-CS
T ss_pred EEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCC-CcCceEEcC-CC
Confidence 5789999999999999999999999988888889999999999999999999999999999999975 567778888 99
Q ss_pred CceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC---C--------------------cceEEEEEeCCCCe
Q 028802 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS---E--------------------YPIESLALSHDRKF 137 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~---~--------------------~~i~~~~~~~~~~~ 137 (203)
..|.++ |+|++.+|++++.|+.|++||+++++.+..+..+. . ..+.+++|+|++++
T Consensus 182 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 261 (420)
T 3vl1_A 182 ATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKY 261 (420)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEE
T ss_pred CcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCE
Confidence 999999 99999999999999999999999999888876532 1 13444556789999
Q ss_pred EEEEeCCCcEEEEeCCCccc
Q 028802 138 LGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 138 l~~~~~d~~i~iwd~~~~~~ 157 (203)
|++++.|+.|++||+++...
T Consensus 262 l~~~~~dg~i~i~d~~~~~~ 281 (420)
T 3vl1_A 262 VIAGHVSGVITVHNVFSKEQ 281 (420)
T ss_dssp EEEEETTSCEEEEETTTCCE
T ss_pred EEEEcCCCeEEEEECCCCce
Confidence 99999999999999988754
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6e-27 Score=181.06 Aligned_cols=155 Identities=11% Similarity=0.153 Sum_probs=138.7
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCC-------eEEEeecCCcccEEEEEEeeCC-CEEEEecCCCeEEEEEcCCccc
Q 028802 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKN-------TVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~v~d~~~~-------~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~d~~i~v~d~~~~~~ 71 (203)
|+|+| ++++|++|+.||.|++|++.++ ..+..+.+|...|.+++|+|++ .+|++++.|+.|++||+.. +.
T Consensus 87 ~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~ 165 (402)
T 2aq5_A 87 IAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT-GA 165 (402)
T ss_dssp EEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTT-TE
T ss_pred EEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCC-CC
Confidence 47999 8999999999999999999887 5667888999999999999998 6999999999999999985 46
Q ss_pred cceee--ecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeee-ccCCCcceEEEEEeCCCCeEEEE---eCC
Q 028802 72 CSDRF--VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI-AEHSEYPIESLALSHDRKFLGSI---SHD 144 (203)
Q Consensus 72 ~~~~~--~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~---~~d 144 (203)
.+..+ .. |...+.++ |+|++.+|++++.|+.|++||+++++.+..+ ..|....+.++.|+|++++|+++ +.|
T Consensus 166 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d 244 (402)
T 2aq5_A 166 AVLTLGPDV-HPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSE 244 (402)
T ss_dssp EEEEECTTT-CCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCC
T ss_pred ccEEEecCC-CCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCC
Confidence 66677 67 88999999 9999999999999999999999999998888 67755458999999999999998 789
Q ss_pred CcEEEEeCCCccc
Q 028802 145 SMLKLWDLDDILK 157 (203)
Q Consensus 145 ~~i~iwd~~~~~~ 157 (203)
+.|++||+++...
T Consensus 245 ~~i~iwd~~~~~~ 257 (402)
T 2aq5_A 245 RQVALWDTKHLEE 257 (402)
T ss_dssp EEEEEEETTBCSS
T ss_pred ceEEEEcCccccC
Confidence 9999999988654
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-26 Score=173.16 Aligned_cols=155 Identities=14% Similarity=0.187 Sum_probs=132.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC----eEEEeecCCcccEEEEEEee--CCCEEEEecCCCeEEEEEcCCcc----
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKN----TVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFK---- 70 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~----~~~~~~~~~~~~i~~l~~~~--~~~~l~~~~~d~~i~v~d~~~~~---- 70 (203)
|+|+|++++|++++.||.|++|++.++ .....+.+|...|.+++|+| ++.+|++++.|+.|++||+....
T Consensus 17 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~ 96 (351)
T 3f3f_A 17 VVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECS 96 (351)
T ss_dssp EEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTS
T ss_pred EEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccccc
Confidence 579999999999999999999999875 46677789999999999999 69999999999999999997532
Q ss_pred ----ccceeeecCCCCceeEE-EeeC--CCEEEEEcCCCcEEEEEccCCce-----------------------------
Q 028802 71 ----DCSDRFVGLSPNSVDAL-LKLD--EDRVITGSENGLISLVGILPNRI----------------------------- 114 (203)
Q Consensus 71 ----~~~~~~~~~~~~~v~~~-~~~~--~~~l~~~~~dg~v~v~d~~~~~~----------------------------- 114 (203)
..+..+.. |...+.++ |+|+ +.++++++.|+.|++||+++++.
T Consensus 97 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (351)
T 3f3f_A 97 GRRWNKLCTLND-SKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSW 175 (351)
T ss_dssp SCSEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEE
T ss_pred ccCcceeeeecc-cCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEe
Confidence 33556677 88999999 9999 99999999999999999875431
Q ss_pred -------------------------------eeeeccCCCcceEEEEEeCCC----CeEEEEeCCCcEEEEeCCCccc
Q 028802 115 -------------------------------IQPIAEHSEYPIESLALSHDR----KFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 115 -------------------------------~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
+..+.+|.. .|.+++|+|++ ++|++++.|+.|++||+++...
T Consensus 176 ~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 252 (351)
T 3f3f_A 176 CPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKS-LIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLS 252 (351)
T ss_dssp CCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCS-CEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-
T ss_pred ccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCc-ceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcC
Confidence 334455644 89999999998 7999999999999999987643
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-27 Score=181.55 Aligned_cols=155 Identities=14% Similarity=0.085 Sum_probs=125.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe---EEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccc--ccee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT---VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD--CSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~--~~~~ 75 (203)
++|+|++++|++++.|++|++||+.++. ....+..|...|.+++|+|++++|++++.|+.|++||+..... ....
T Consensus 61 ~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 140 (377)
T 3dwl_C 61 VDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKH 140 (377)
T ss_dssp EEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEE
T ss_pred EEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeE
Confidence 4799999999999999999999999876 5667788999999999999999999999999999999975322 2444
Q ss_pred eecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEcc------------------CCceeeeeccCCCcceEEEEEeCCCC
Q 028802 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL------------------PNRIIQPIAEHSEYPIESLALSHDRK 136 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~------------------~~~~~~~~~~~~~~~i~~~~~~~~~~ 136 (203)
+...|...+.++ |+|++++|++++.|+.|++||+. .++++..+ .|.. .|.+++|+|+++
T Consensus 141 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~sp~~~ 218 (377)
T 3dwl_C 141 LKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG-WVHAVGFSPSGN 218 (377)
T ss_dssp ECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS-SEEEEEECTTSS
T ss_pred eecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc-eEEEEEECCCCC
Confidence 443267889999 99999999999999999999985 34556666 6744 899999999999
Q ss_pred eEEEEeCCCcEEEEeCCCccc
Q 028802 137 FLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 137 ~l~~~~~d~~i~iwd~~~~~~ 157 (203)
+|++++.|+.|++||+.++..
T Consensus 219 ~l~~~~~d~~i~iwd~~~~~~ 239 (377)
T 3dwl_C 219 ALAYAGHDSSVTIAYPSAPEQ 239 (377)
T ss_dssp CEEEEETTTEEC-CEECSTTS
T ss_pred EEEEEeCCCcEEEEECCCCCC
Confidence 999999999999999998765
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-26 Score=184.19 Aligned_cols=147 Identities=20% Similarity=0.343 Sum_probs=135.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
|+|+|++++|++++.|+.|++|+. +++.+..+..|...|.+++|+|++++|++++.|+.|++|+.. +..+..+.. |
T Consensus 391 ~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~--~~~~~~~~~-~ 466 (577)
T 2ymu_A 391 VAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN--GQLLQTLTG-H 466 (577)
T ss_dssp EEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT--SCEEEEEEC-C
T ss_pred EEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC--CCEEEEEcC-C
Confidence 479999999999999999999995 566778888999999999999999999999999999999974 567788888 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
...+.++ |+|++++|++++.|+.|++||. +++++..+.+|.. .|++++|+|++++|++++.|+.|++||..
T Consensus 467 ~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~-~v~~l~~s~dg~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 467 SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNRN 538 (577)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSS-CEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCC-CEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence 9999999 9999999999999999999995 6888899999965 89999999999999999999999999964
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-27 Score=176.35 Aligned_cols=153 Identities=17% Similarity=0.182 Sum_probs=130.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe--EEEeecCCcccEEEEEEee--CCCEEEEecCCCeEEEEEcCCcc-cccee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFK-DCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~i~~l~~~~--~~~~l~~~~~d~~i~v~d~~~~~-~~~~~ 75 (203)
++|+|+|++|++|+.|++|++||+.++. .+..+.+|...|.+++|+| ++++|++++.|++|++||+.... .....
T Consensus 19 v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~ 98 (316)
T 3bg1_A 19 AQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHE 98 (316)
T ss_dssp EEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEE
T ss_pred eeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEE
Confidence 4799999999999999999999998764 4677889999999999986 48999999999999999997532 34556
Q ss_pred eecCCCCceeEE-EeeC--CCEEEEEcCCCcEEEEEccCCce---eeeeccCCCcceEEEEEeCC---------------
Q 028802 76 FVGLSPNSVDAL-LKLD--EDRVITGSENGLISLVGILPNRI---IQPIAEHSEYPIESLALSHD--------------- 134 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~--~~~l~~~~~dg~v~v~d~~~~~~---~~~~~~~~~~~i~~~~~~~~--------------- 134 (203)
+.+ |...|.++ |+|+ +.+|++++.|+.|++|+++.+.. ...+.+|.. .|.+++|+|+
T Consensus 99 ~~~-h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~ 176 (316)
T 3bg1_A 99 HAG-HDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTI-GCNAVSWAPAVVPGSLIDHPSGQKP 176 (316)
T ss_dssp ECC-CSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSS-CBCCCEECCCCCC------CCSCCC
T ss_pred ccC-CCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccC-CcceEEEccccCCccccccccccCc
Confidence 777 89999999 9997 88999999999999999987532 345567754 7999999997
Q ss_pred --CCeEEEEeCCCcEEEEeCCCc
Q 028802 135 --RKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 135 --~~~l~~~~~d~~i~iwd~~~~ 155 (203)
+.+|++++.|+.|++||+++.
T Consensus 177 ~~~~~l~sgs~D~~v~lWd~~~~ 199 (316)
T 3bg1_A 177 NYIKRFASGGCDNLIKLWKEEED 199 (316)
T ss_dssp CCCCBEECCBTTSBCCEEEECTT
T ss_pred cccceEEEecCCCeEEEEEeCCC
Confidence 478999999999999999753
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-25 Score=170.36 Aligned_cols=147 Identities=20% Similarity=0.257 Sum_probs=127.5
Q ss_pred cc-cCCEEEEEcCCCeEEEEEcCC-------CeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcccccee
Q 028802 4 AA-DAMKLLGTSGDGTLSVCNLRK-------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 4 sp-~~~~l~~~~~d~~i~v~d~~~-------~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 75 (203)
+| ++++|++|+.|++|++|++.+ +.....+.+|...|.+++|+|++.+|++++.|+.|++||+.+ +..+..
T Consensus 35 ~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~-~~~~~~ 113 (343)
T 2xzm_R 35 ENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRT-GTTYKR 113 (343)
T ss_dssp TTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTS-SCEEEE
T ss_pred cCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC-CcEEEE
Confidence 55 899999999999999999874 345677889999999999999999999999999999999975 567788
Q ss_pred eecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeec---cCCCcceEEEEEeCCC----------CeEEEE
Q 028802 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA---EHSEYPIESLALSHDR----------KFLGSI 141 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~---~~~~~~i~~~~~~~~~----------~~l~~~ 141 (203)
+.+ |...|.++ |+|++++|++++.|+.|++||+... ...... .|.. .|.+++|+|++ .+|+++
T Consensus 114 ~~~-h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~l~s~ 190 (343)
T 2xzm_R 114 FVG-HQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSD-WVSCVRYSPIMKSANKVQPFAPYFASV 190 (343)
T ss_dssp EEC-CCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSS-CEEEEEECCCCCSCSCCCSSCCEEEEE
T ss_pred EcC-CCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCc-eeeeeeeccccccccccCCCCCEEEEE
Confidence 888 99999999 9999999999999999999999743 333332 5544 79999999987 789999
Q ss_pred eCCCcEEEEeCCC
Q 028802 142 SHDSMLKLWDLDD 154 (203)
Q Consensus 142 ~~d~~i~iwd~~~ 154 (203)
+.|+.|++||...
T Consensus 191 ~~d~~i~iwd~~~ 203 (343)
T 2xzm_R 191 GWDGRLKVWNTNF 203 (343)
T ss_dssp ETTSEEEEEETTT
T ss_pred cCCCEEEEEcCCC
Confidence 9999999999543
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-26 Score=179.06 Aligned_cols=155 Identities=17% Similarity=0.229 Sum_probs=127.6
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCCe--EEEeecCCcccEEEEEEee-CCCEEEEecCCCeEEEEEcCCccccceee
Q 028802 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 76 (203)
|+|+| ++++||+|+.||+|+|||+.++. ....+.+|...|++|+|+| ++.+|++++.|++|++||+.. .....+
T Consensus 125 l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~--~~~~~~ 202 (435)
T 4e54_B 125 LAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG--NILRVF 202 (435)
T ss_dssp EEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTS--CEEEEE
T ss_pred EEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccC--CceeEE
Confidence 57999 56789999999999999998764 3445668999999999998 689999999999999999974 333333
Q ss_pred ecC--CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCC-eEEEEeCCCcEEEEeC
Q 028802 77 VGL--SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSISHDSMLKLWDL 152 (203)
Q Consensus 77 ~~~--~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~ 152 (203)
... +...+.++ |+|++.+|++|+.+|.|++||++ ++.+..+.+|.. .|.+++|+|++. +|++++.|+.|++||+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~-~v~~v~~~p~~~~~~~s~s~d~~v~iwd~ 280 (435)
T 4e54_B 203 ASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKK-KVTHVALNPCCDWFLATASVDQTVKIWDL 280 (435)
T ss_dssp ECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSS-CEEEEEECTTCSSEEEEEETTSBCCEEET
T ss_pred eccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccc-eEEeeeecCCCceEEEEecCcceeeEEec
Confidence 320 23346777 89999999999999999999986 566778888855 899999999886 6778999999999999
Q ss_pred CCcccCC
Q 028802 153 DDILKGS 159 (203)
Q Consensus 153 ~~~~~~~ 159 (203)
++.....
T Consensus 281 ~~~~~~~ 287 (435)
T 4e54_B 281 RQVRGKA 287 (435)
T ss_dssp TTCCSSS
T ss_pred ccccccc
Confidence 8876543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-26 Score=189.53 Aligned_cols=154 Identities=16% Similarity=0.246 Sum_probs=141.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++++.+|.|++||+.++..+..+..|..+|.+++|+|++++|++++.+|.|++||+.+ +..+..+.. |
T Consensus 19 i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~-~~~~~~~~~-~ 96 (814)
T 3mkq_A 19 IDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT-GEKVVDFEA-H 96 (814)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT-CCEEEEEEC-C
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC-CcEEEEEec-C
Confidence 57999999999999999999999999999999999999999999999999999999999999999975 577788888 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC-ceeeeeccCCCcceEEEEEeC-CCCeEEEEeCCCcEEEEeCCCccc
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~-~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
...+.++ |+|++++|++++.+|.|++|++.++ .....+..|.. .|.+++|+| ++..|++++.|+.|++||+.+...
T Consensus 97 ~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~ 175 (814)
T 3mkq_A 97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH-FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP 175 (814)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSS-CEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC
T ss_pred CCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCC-cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc
Confidence 9999999 9999999999999999999999987 66677788855 899999999 889999999999999999977654
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.95 E-value=8.2e-26 Score=173.79 Aligned_cols=152 Identities=12% Similarity=0.142 Sum_probs=134.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC---C---cccEEEEEEeeCCCEEEEecCC---CeEEEEEcCCccc
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF---S---EEELTSVVLMKNGRKVVCGSQS---GTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---~---~~~i~~l~~~~~~~~l~~~~~d---~~i~v~d~~~~~~ 71 (203)
++|+|++ +|++++.|+.|++||+.+++.+..+.. | ...|.+++|+|++.+|++++.+ +.|++||+.. ..
T Consensus 192 ~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~-~~ 269 (397)
T 1sq9_A 192 VDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF-GE 269 (397)
T ss_dssp EEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT-CC
T ss_pred EEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCC-Cc
Confidence 4789999 999999999999999999999988888 8 8999999999999999999999 9999999975 45
Q ss_pred cceeeecC------------CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeec------cC-----------
Q 028802 72 CSDRFVGL------------SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA------EH----------- 121 (203)
Q Consensus 72 ~~~~~~~~------------~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~------~~----------- 121 (203)
.+..+... |...+.++ |+|++.+|++++.|+.|++||+.+++.+..+. .|
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 349 (397)
T 1sq9_A 270 RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHG 349 (397)
T ss_dssp EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTS
T ss_pred ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhcccccc
Confidence 55555421 46788999 99999999999999999999999999998888 66
Q ss_pred ----CCcceEEEEEeCCC----------CeEEEEeCCCcEEEEeCCCc
Q 028802 122 ----SEYPIESLALSHDR----------KFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 122 ----~~~~i~~~~~~~~~----------~~l~~~~~d~~i~iwd~~~~ 155 (203)
.. .|.+++|+|++ ++|++++.|+.|++|++.++
T Consensus 350 ~~~~~~-~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 350 DSLAEP-GVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp CBCSSC-CEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ccccCC-ceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 55 89999999998 79999999999999999765
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.8e-26 Score=175.52 Aligned_cols=157 Identities=10% Similarity=0.176 Sum_probs=141.2
Q ss_pred Cccccc-CCEEEEEcCCCeEEEEEcCCCeEEEeecCC------cccEEEEEEeeCC-CEEEEecCCC---eEEEEEcCCc
Q 028802 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRSEFS------EEELTSVVLMKNG-RKVVCGSQSG---TVLLYSWGYF 69 (203)
Q Consensus 1 l~~sp~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~------~~~i~~l~~~~~~-~~l~~~~~d~---~i~v~d~~~~ 69 (203)
++|+|+ +.+|++++.|+.|++||+.+++.+..+..+ ...|.+++|+|++ .+|++++.++ .|++||++..
T Consensus 171 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~ 250 (416)
T 2pm9_A 171 LAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA 250 (416)
T ss_dssp EEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST
T ss_pred EEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC
Confidence 478998 789999999999999999999888888776 7889999999997 6899999998 9999999865
Q ss_pred cccceeee-cCCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCC-CeEEEEeCCC
Q 028802 70 KDCSDRFV-GLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDS 145 (203)
Q Consensus 70 ~~~~~~~~-~~~~~~v~~~-~~~-~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~ 145 (203)
...+..+. . |...+.++ |+| ++.+|++++.|+.|++||+.+++.+..+..|.. .|.+++|+|++ .+|++++.|+
T Consensus 251 ~~~~~~~~~~-~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~l~s~~~d~ 328 (416)
T 2pm9_A 251 NTPLQTLNQG-HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN-WCFKTKFAPEAPDLFACASFDN 328 (416)
T ss_dssp TSCSBCCCSC-CSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSS-CCCCEEECTTCTTEEEECCSSS
T ss_pred CCCcEEeecC-ccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCC-ceEEEEECCCCCCEEEEEecCC
Confidence 56677777 7 89999999 999 999999999999999999999999999999855 89999999999 8999999999
Q ss_pred cEEEEeCCCcccCC
Q 028802 146 MLKLWDLDDILKGS 159 (203)
Q Consensus 146 ~i~iwd~~~~~~~~ 159 (203)
.|++|++.+.....
T Consensus 329 ~i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 329 KIEVQTLQNLTNTL 342 (416)
T ss_dssp EEEEEESCCCCCSS
T ss_pred cEEEEEccCCCCCc
Confidence 99999998876543
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.3e-26 Score=172.27 Aligned_cols=154 Identities=16% Similarity=0.164 Sum_probs=134.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcC--CCeEEEeecCCcccEEEEEEeeC--CCEEEEecCCCeEEEEEcCCcc-cccee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLR--KNTVQTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFK-DCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~--~~~~~~~~~~~~~~i~~l~~~~~--~~~l~~~~~d~~i~v~d~~~~~-~~~~~ 75 (203)
|+|+|++++|++|+.||.|++|++. ++..+..+..|...|.+++|+++ +.+|++++.|+.|++||+.... ..+..
T Consensus 17 ~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 96 (379)
T 3jrp_A 17 AVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV 96 (379)
T ss_dssp EEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred EEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeee
Confidence 5799999999999999999999998 55677888899999999999987 8999999999999999997532 15566
Q ss_pred eecCCCCceeEE-EeeC--CCEEEEEcCCCcEEEEEccCCc--eeeeeccCCCcceEEEEEeC-------------CCCe
Q 028802 76 FVGLSPNSVDAL-LKLD--EDRVITGSENGLISLVGILPNR--IIQPIAEHSEYPIESLALSH-------------DRKF 137 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~--~~~l~~~~~dg~v~v~d~~~~~--~~~~~~~~~~~~i~~~~~~~-------------~~~~ 137 (203)
+.. |...+.++ |+|+ +.++++++.++.|++||+..+. ....+..|.. .|.+++|+| ++.+
T Consensus 97 ~~~-~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~ 174 (379)
T 3jrp_A 97 HAV-HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI-GVNSASWAPATIEEDGEHNGTKESRK 174 (379)
T ss_dssp ECC-CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTT-CEEEEEECCCC----------CTTCE
T ss_pred ecC-CCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCC-ceEEEEEcCccccccccccCCCCCCE
Confidence 777 88999999 9999 9999999999999999998763 3345566744 899999999 6999
Q ss_pred EEEEeCCCcEEEEeCCCcc
Q 028802 138 LGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 138 l~~~~~d~~i~iwd~~~~~ 156 (203)
|++++.|+.|++||+++..
T Consensus 175 l~~~~~dg~i~i~d~~~~~ 193 (379)
T 3jrp_A 175 FVTGGADNLVKIWKYNSDA 193 (379)
T ss_dssp EEEEETTSCEEEEEEETTT
T ss_pred EEEEeCCCeEEEEEecCCC
Confidence 9999999999999997654
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-26 Score=179.51 Aligned_cols=153 Identities=16% Similarity=0.174 Sum_probs=128.6
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCCeEEEeec--CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee
Q 028802 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 77 (203)
|+|+| ++++|++|+.|++|++||+.++....... .+...+.+++|+|++.+|++|+.+|.|++||+. +..+..+.
T Consensus 170 l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~--~~~~~~~~ 247 (435)
T 4e54_B 170 LKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD--GKELWNLR 247 (435)
T ss_dssp EEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS--SCBCCCSB
T ss_pred EEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC--cceeEEEe
Confidence 57998 68999999999999999998765443333 334567899999999999999999999999986 45677788
Q ss_pred cCCCCceeEE-EeeCCC-EEEEEcCCCcEEEEEccCCceeee---eccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028802 78 GLSPNSVDAL-LKLDED-RVITGSENGLISLVGILPNRIIQP---IAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~-~l~~~~~dg~v~v~d~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
. |...|.++ |+|++. ++++++.|+.|++||+++.+.... ..+|.. .|++++|+|+|++|++++.|+.|+|||+
T Consensus 248 ~-h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~-~v~~~~~spdg~~l~s~~~D~~i~iwd~ 325 (435)
T 4e54_B 248 M-HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRH-PVNAACFSPDGARLLTTDQKSEIRVYSA 325 (435)
T ss_dssp C-CSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSS-CEEECCBCTTSSEEEEEESSSCEEEEES
T ss_pred c-ccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccc-cccceeECCCCCeeEEEcCCCEEEEEEC
Confidence 8 99999999 999876 677899999999999987654433 345644 8999999999999999999999999999
Q ss_pred CCccc
Q 028802 153 DDILK 157 (203)
Q Consensus 153 ~~~~~ 157 (203)
.++..
T Consensus 326 ~~~~~ 330 (435)
T 4e54_B 326 SQWDC 330 (435)
T ss_dssp SSSSS
T ss_pred CCCcc
Confidence 87653
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.7e-26 Score=195.63 Aligned_cols=154 Identities=17% Similarity=0.250 Sum_probs=143.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++|+.||+|++|++.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+ +..+..+.. |
T Consensus 621 ~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~-~~~~~~~~~-~ 698 (1249)
T 3sfz_A 621 ACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT-GKLVHTYDE-H 698 (1249)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEEC-C
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC-CceEEEEcC-C
Confidence 47999999999999999999999999999999999999999999999999999999999999999975 577888888 9
Q ss_pred CCceeEE-Eee--CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028802 81 PNSVDAL-LKL--DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 81 ~~~v~~~-~~~--~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
...+.++ |+| ++.++++++.|+.|++||+.+++++..+.+|.. .|.+++|+|++++|++++.||.|++||+.++..
T Consensus 699 ~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~-~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~ 777 (1249)
T 3sfz_A 699 SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN-SVNHCRFSPDDELLASCSADGTLRLWDVRSANE 777 (1249)
T ss_dssp SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSS-CEEEEEECSSTTEEEEEESSSEEEEEEGGGTEE
T ss_pred CCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCC-CEEEEEEecCCCEEEEEECCCeEEEEeCCCCcc
Confidence 9999999 888 566899999999999999999999999999965 899999999999999999999999999987754
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=172.21 Aligned_cols=152 Identities=15% Similarity=0.222 Sum_probs=132.1
Q ss_pred CcccccC-CEEEEEcCCCeEEEEEcCCCeEEEeec--CCcccEEEEEEee-CCCEEEEecCCCeEEEEEcCCccccceee
Q 028802 1 MTFAADA-MKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 76 (203)
|+|+|++ ++|++|+.|+.|++|++.++.....+. +|...|.+++|+| ++.+|++++.|+.|++||+.. ..+..+
T Consensus 79 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~ 156 (383)
T 3ei3_B 79 LEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG--SVIQVF 156 (383)
T ss_dssp EEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS--CEEEEE
T ss_pred EEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC--CceEEE
Confidence 4799999 899999999999999999876665554 6899999999999 789999999999999999973 445555
Q ss_pred ecC--CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCC-eEEEEeCCCcEEEEeC
Q 028802 77 VGL--SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSISHDSMLKLWDL 152 (203)
Q Consensus 77 ~~~--~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~ 152 (203)
... +...+.++ |+|++++|++++.++.|++||+ +++.+..+..|.. .|.+++|+|+++ +|++++.|+.|++||+
T Consensus 157 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~d~~i~iwd~ 234 (383)
T 3ei3_B 157 AKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKA-KVTHAEFNPRCDWLMATSSVDATVKLWDL 234 (383)
T ss_dssp ECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSS-CEEEEEECSSCTTEEEEEETTSEEEEEEG
T ss_pred eccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCC-cEEEEEECCCCCCEEEEEeCCCEEEEEeC
Confidence 440 33678999 9999999999999999999999 5778888888865 899999999998 8999999999999999
Q ss_pred CCcc
Q 028802 153 DDIL 156 (203)
Q Consensus 153 ~~~~ 156 (203)
++..
T Consensus 235 ~~~~ 238 (383)
T 3ei3_B 235 RNIK 238 (383)
T ss_dssp GGCC
T ss_pred CCCC
Confidence 8743
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-26 Score=173.04 Aligned_cols=153 Identities=18% Similarity=0.213 Sum_probs=129.0
Q ss_pred Ccccc--cCCEEEEEcCCCeEEEEEcCCC--eEEEeecCCcccEEEEEEeeC--CCEEEEecCCCeEEEEEcCCccc--c
Q 028802 1 MTFAA--DAMKLLGTSGDGTLSVCNLRKN--TVQTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFKD--C 72 (203)
Q Consensus 1 l~~sp--~~~~l~~~~~d~~i~v~d~~~~--~~~~~~~~~~~~i~~l~~~~~--~~~l~~~~~d~~i~v~d~~~~~~--~ 72 (203)
|+|+| ++++|++|+.|++|++||+.++ .....+.+|...|.+++|+|+ +.+|++++.|+.|++||+..... .
T Consensus 63 v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~ 142 (316)
T 3bg1_A 63 VAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEV 142 (316)
T ss_dssp EEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEE
T ss_pred EEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcce
Confidence 46775 4899999999999999999876 356677889999999999998 78999999999999999975322 2
Q ss_pred ceeeecCCCCceeEE-EeeC-----------------CCEEEEEcCCCcEEEEEccCC---ceeeeeccCCCcceEEEEE
Q 028802 73 SDRFVGLSPNSVDAL-LKLD-----------------EDRVITGSENGLISLVGILPN---RIIQPIAEHSEYPIESLAL 131 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~-----------------~~~l~~~~~dg~v~v~d~~~~---~~~~~~~~~~~~~i~~~~~ 131 (203)
...+.. |...+.++ |+|+ +.+|++++.|+.|++||++.. +++..+.+|.. .|.+++|
T Consensus 143 ~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~-~V~~v~~ 220 (316)
T 3bg1_A 143 KKINNA-HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSD-WVRDVAW 220 (316)
T ss_dssp CCBTTS-SSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSS-CEEEEEC
T ss_pred eeeecc-ccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCC-ceEEEEe
Confidence 344566 78888888 8887 478999999999999999754 46677888865 8999999
Q ss_pred eCCC----CeEEEEeCCCcEEEEeCCCc
Q 028802 132 SHDR----KFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 132 ~~~~----~~l~~~~~d~~i~iwd~~~~ 155 (203)
+|++ .+|++++.|++|++|++.+.
T Consensus 221 sp~~~~~~~~las~s~D~~v~iw~~~~~ 248 (316)
T 3bg1_A 221 APSIGLPTSTIASCSQDGRVFIWTCDDA 248 (316)
T ss_dssp CCCSSCSCCEEEEEETTCEEEEEECSST
T ss_pred cCCCCCCCceEEEEcCCCeEEEEEccCc
Confidence 9986 78999999999999998763
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=168.74 Aligned_cols=155 Identities=14% Similarity=0.241 Sum_probs=134.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeE---EEee--cCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccc-cce
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV---QTRS--EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD-CSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~---~~~~--~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~ 74 (203)
++|+|++++|++++ ||.|++|++.++.. ...+ ..|...|.+++|+|++++|++++.++.|++||+..... ...
T Consensus 57 ~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 135 (337)
T 1gxr_A 57 VTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA 135 (337)
T ss_dssp EEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEE
T ss_pred EEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceee
Confidence 47999999999998 99999999987542 2222 26889999999999999999999999999999975321 445
Q ss_pred eeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
.+.. +...+.++ |+|+++++++++.++.|++||+++++.+..+..|.. .|.+++|+|++++|++++.|+.|++||++
T Consensus 136 ~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~~~d~~ 213 (337)
T 1gxr_A 136 ELTS-SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD-GASCIDISNDGTKLWTGGLDNTVRSWDLR 213 (337)
T ss_dssp EEEC-SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eccc-CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccC-ceEEEEECCCCCEEEEEecCCcEEEEECC
Confidence 6677 88889999 999999999999999999999999999999988855 89999999999999999999999999998
Q ss_pred CcccC
Q 028802 154 DILKG 158 (203)
Q Consensus 154 ~~~~~ 158 (203)
++...
T Consensus 214 ~~~~~ 218 (337)
T 1gxr_A 214 EGRQL 218 (337)
T ss_dssp TTEEE
T ss_pred CCceE
Confidence 87644
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-25 Score=172.60 Aligned_cols=154 Identities=13% Similarity=0.172 Sum_probs=138.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
|+|+|++++|++|+.||.|++|++.+++.+..+..|...|.+++| ++.+|++++.++.|++||+.........+.. |
T Consensus 140 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~ 216 (401)
T 4aez_A 140 VKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQG-H 216 (401)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEEC-C
T ss_pred EEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcC-C
Confidence 579999999999999999999999999999999999999999999 4679999999999999999865677788888 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCe-EEEEe--CCCcEEEEeCCCcc
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF-LGSIS--HDSMLKLWDLDDIL 156 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~--~d~~i~iwd~~~~~ 156 (203)
...+.++ |+|++.+|++++.|+.|++||+++++.+..+..|.. .|.+++|+|++.. +++++ .|+.|++||+.++.
T Consensus 217 ~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~ 295 (401)
T 4aez_A 217 SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNA-AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA 295 (401)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSS-CCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC
T ss_pred CCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcc-eEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC
Confidence 9999999 999999999999999999999999999988888855 8999999998755 55554 69999999998876
Q ss_pred cC
Q 028802 157 KG 158 (203)
Q Consensus 157 ~~ 158 (203)
..
T Consensus 296 ~~ 297 (401)
T 4aez_A 296 RV 297 (401)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-25 Score=164.51 Aligned_cols=154 Identities=14% Similarity=0.214 Sum_probs=122.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC-----------------------------------------Cccc
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-----------------------------------------SEEE 39 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-----------------------------------------~~~~ 39 (203)
|+|+|++++|++|+.|++|++|++.+++.+..+.+ |...
T Consensus 73 v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (318)
T 4ggc_A 73 VAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE 152 (318)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSC
T ss_pred EEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCc
Confidence 47999999999999999999999998776554433 4455
Q ss_pred EEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc---ceee----------------------------------------
Q 028802 40 LTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC---SDRF---------------------------------------- 76 (203)
Q Consensus 40 i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~---~~~~---------------------------------------- 76 (203)
+..+.+.+++++|++++.|+.|++||+...... ....
T Consensus 153 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~ 232 (318)
T 4ggc_A 153 VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA 232 (318)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC
T ss_pred eEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc
Confidence 677788888999999999999999998642110 0000
Q ss_pred ----ecCCCCceeEE-EeeCCCEEEEEc--CCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEE
Q 028802 77 ----VGLSPNSVDAL-LKLDEDRVITGS--ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 77 ----~~~~~~~v~~~-~~~~~~~l~~~~--~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 149 (203)
.. +...+..+ |+|.+..+++++ .|+.|++||+++++++..+.+|.. .|++++|+|++++|++++.|++|+|
T Consensus 233 ~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~-~V~~l~~spdg~~l~S~s~D~~v~i 310 (318)
T 4ggc_A 233 CLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS-RVLSLTMSPDGATVASAAADETLRL 310 (318)
T ss_dssp EEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSCEEEEETTTEEEE
T ss_pred cccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEecCCeEEE
Confidence 01 22334555 788888877654 789999999999999999999965 8999999999999999999999999
Q ss_pred EeCCCcc
Q 028802 150 WDLDDIL 156 (203)
Q Consensus 150 wd~~~~~ 156 (203)
||+....
T Consensus 311 Wd~~~~d 317 (318)
T 4ggc_A 311 WRCFELD 317 (318)
T ss_dssp ECCSCCC
T ss_pred EECCCCC
Confidence 9997653
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=176.05 Aligned_cols=155 Identities=15% Similarity=0.210 Sum_probs=135.1
Q ss_pred CcccccCCEE-EEEcCCCeEEEEEcC--CCeEEEeec--CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccc---c
Q 028802 1 MTFAADAMKL-LGTSGDGTLSVCNLR--KNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD---C 72 (203)
Q Consensus 1 l~~sp~~~~l-~~~~~d~~i~v~d~~--~~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~---~ 72 (203)
++|+|++++| ++++.|+.|++|++. ++..+..+. .+...|.+++|+|++.+|++++.++.+++|++..... .
T Consensus 108 ~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~ 187 (450)
T 2vdu_B 108 LRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFT 187 (450)
T ss_dssp EEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCC
T ss_pred EEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCccccccc
Confidence 4799999996 889999999999999 777777765 5668899999999999999999999999999975321 2
Q ss_pred ceeeecCCCCceeEE-EeeC---CCEEEEEcCCCcEEEEEccCCceeee-eccCCCcceEEEEEeCCCCeEEEEeCCCcE
Q 028802 73 SDRFVGLSPNSVDAL-LKLD---EDRVITGSENGLISLVGILPNRIIQP-IAEHSEYPIESLALSHDRKFLGSISHDSML 147 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~---~~~l~~~~~dg~v~v~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 147 (203)
...+.+ |...+.++ |+|+ +.+|++++.|+.|++||+.+++.+.. +.+|.. .|.+++|+ ++++|++++.|+.|
T Consensus 188 ~~~~~~-h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~-~v~~~~~s-d~~~l~s~~~d~~v 264 (450)
T 2vdu_B 188 QEPILG-HVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH-FVSSICCG-KDYLLLSAGGDDKI 264 (450)
T ss_dssp CCCSEE-CSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS-CEEEEEEC-STTEEEEEESSSEE
T ss_pred ceeeec-ccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC-ceEEEEEC-CCCEEEEEeCCCeE
Confidence 336778 89999999 9999 99999999999999999999888877 557754 89999999 99999999999999
Q ss_pred EEEeCCCcccC
Q 028802 148 KLWDLDDILKG 158 (203)
Q Consensus 148 ~iwd~~~~~~~ 158 (203)
++||++++...
T Consensus 265 ~vwd~~~~~~~ 275 (450)
T 2vdu_B 265 FAWDWKTGKNL 275 (450)
T ss_dssp EEEETTTCCEE
T ss_pred EEEECCCCcEe
Confidence 99999987643
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.5e-26 Score=174.51 Aligned_cols=150 Identities=15% Similarity=0.102 Sum_probs=137.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++++.|+.|++|++.+++.+..+..|...|.+++|+|++ +|++++.++.|++||+.. +..+..+.. +
T Consensus 253 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~-~~~~~~~~~-~ 329 (425)
T 1r5m_A 253 LEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ-NTLLALSIV-D 329 (425)
T ss_dssp EEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTT-TEEEEEEEC-T
T ss_pred EEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCC-CcEeEeccc-C
Confidence 4789999999999999999999999988888888899999999999999 999999999999999975 567777787 8
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc--------------------eeeeeccCCCc-ceEEEEEeCCCCeE
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNR--------------------IIQPIAEHSEY-PIESLALSHDRKFL 138 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~--------------------~~~~~~~~~~~-~i~~~~~~~~~~~l 138 (203)
...+.++ |+|++++|++++.+|.|++|++.++. .+..+..|... .|.+++|+|++++|
T Consensus 330 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 409 (425)
T 1r5m_A 330 GVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKI 409 (425)
T ss_dssp TCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEE
T ss_pred CccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceE
Confidence 8999999 99999999999999999999999887 78888888443 79999999999999
Q ss_pred EEEeCCCcEEEEeCC
Q 028802 139 GSISHDSMLKLWDLD 153 (203)
Q Consensus 139 ~~~~~d~~i~iwd~~ 153 (203)
++++.|+.|++|+++
T Consensus 410 ~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 410 SVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEESSSCCEEEECC
T ss_pred EEEecCceEEEEeec
Confidence 999999999999986
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-26 Score=184.06 Aligned_cols=151 Identities=11% Similarity=0.057 Sum_probs=129.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC-eEEEeecCCcccEEEE--EEeeCC-CEEEEecCCCeEEEEEcCCccccceee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKN-TVQTRSEFSEEELTSV--VLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~i~~l--~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~ 76 (203)
++|+|+ ..|++|+.||+|++||+.++ .+...+.+|...|.++ +|+|++ .+|++++.|++|++||++. ..+...+
T Consensus 272 v~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~-~~~~~~~ 349 (524)
T 2j04_B 272 FDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKD-IATTKTT 349 (524)
T ss_dssp EEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGG-HHHHCEE
T ss_pred EEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCC-CCccccc
Confidence 467875 48999999999999999876 3445678899999999 567887 8999999999999999975 4555556
Q ss_pred ecCCCC--ceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 77 VGLSPN--SVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 77 ~~~~~~--~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
.+ |.. .+.++ |+|++..+++++.++.|++||++++.++.++.+|.. .|++++|+|++++|++|+.|++|++|++.
T Consensus 350 ~~-~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~-~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~ 427 (524)
T 2j04_B 350 VS-RFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRET-TITAIGVSRLHPMVLAGSADGSLIITNAA 427 (524)
T ss_dssp EE-ECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSS-CEEEEECCSSCCBCEEEETTTEEECCBSC
T ss_pred cc-ccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCC-ceEEEEeCCCCCeEEEEECCCEEEEEech
Confidence 55 543 47778 999999999999999999999999988888888965 89999999999999999999999999986
Q ss_pred Cc
Q 028802 154 DI 155 (203)
Q Consensus 154 ~~ 155 (203)
..
T Consensus 428 ~~ 429 (524)
T 2j04_B 428 RR 429 (524)
T ss_dssp SS
T ss_pred Hh
Confidence 54
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-25 Score=169.81 Aligned_cols=152 Identities=16% Similarity=0.150 Sum_probs=132.3
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCCeEEEeec---CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee
Q 028802 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSE---FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 76 (203)
++|+| ++++|++++.|+.|++||+.+. .+..+. .+...|.+++|+|++.+|++++.++.|++||+. +..+..+
T Consensus 124 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~ 200 (383)
T 3ei3_B 124 MKFNQFNTNQLFVSSIRGATTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD--GHEIFKE 200 (383)
T ss_dssp EEEETTEEEEEEEEETTTEEEEEETTSC-EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT--SCEEEEE
T ss_pred EEeCCCCCCEEEEEeCCCEEEEEECCCC-ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC--CCEEEEe
Confidence 47899 7899999999999999999864 444443 344789999999999999999999999999984 5677888
Q ss_pred ecCCCCceeEE-EeeCCC-EEEEEcCCCcEEEEEccC----CceeeeeccCCCcceEEEEEeC-CCCeEEEEeCCCcEEE
Q 028802 77 VGLSPNSVDAL-LKLDED-RVITGSENGLISLVGILP----NRIIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKL 149 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~-~l~~~~~dg~v~v~d~~~----~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i 149 (203)
.. |...+.++ |+|+++ ++++++.|+.|++||+++ +..+..+ .|.. .|.+++|+| ++.+|++++.|+.|++
T Consensus 201 ~~-h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~-~v~~~~~s~~~~~~l~~~~~d~~i~i 277 (383)
T 3ei3_B 201 KL-HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEK-PVNAAYFNPTDSTKLLTTDQRNEIRV 277 (383)
T ss_dssp EC-SSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSS-CEEEEEECTTTSCEEEEEESSSEEEE
T ss_pred cc-CCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCC-ceEEEEEcCCCCCEEEEEcCCCcEEE
Confidence 88 99999999 999999 999999999999999997 5566656 5644 899999999 9999999999999999
Q ss_pred EeCCCcccC
Q 028802 150 WDLDDILKG 158 (203)
Q Consensus 150 wd~~~~~~~ 158 (203)
||+++....
T Consensus 278 wd~~~~~~~ 286 (383)
T 3ei3_B 278 YSSYDWSKP 286 (383)
T ss_dssp EETTBTTSC
T ss_pred EECCCCccc
Confidence 999887654
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-25 Score=174.80 Aligned_cols=156 Identities=12% Similarity=0.216 Sum_probs=136.1
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCC---eEEEeecCCcccEEEEEEeeCCC-EEEEecCCCeEEEEEcCCcccccee
Q 028802 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~i~~l~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~ 75 (203)
++|+| ++.+|++++.|+.|++||++++ ..+..+..|...|.+++|+|++. +|++++.+|.|++||++.....+..
T Consensus 237 v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~ 316 (430)
T 2xyi_A 237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 316 (430)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEE
T ss_pred eEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEE
Confidence 47899 6789999999999999999976 46667778999999999999887 6889999999999999875677888
Q ss_pred eecCCCCceeEE-EeeCCC-EEEEEcCCCcEEEEEccC--------------CceeeeeccCCCcceEEEEEeCCCC-eE
Q 028802 76 FVGLSPNSVDAL-LKLDED-RVITGSENGLISLVGILP--------------NRIIQPIAEHSEYPIESLALSHDRK-FL 138 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~-~l~~~~~dg~v~v~d~~~--------------~~~~~~~~~~~~~~i~~~~~~~~~~-~l 138 (203)
+.. |...+.++ |+|++. ++++++.++.|++||+.. ...+..+.+|.. .|.+++|+|+++ +|
T Consensus 317 ~~~-h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~l 394 (430)
T 2xyi_A 317 FES-HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-KISDFSWNPNEPWII 394 (430)
T ss_dssp EEC-CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS-CEEEEEECSSSTTEE
T ss_pred eec-CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCC-CceEEEECCCCCCEE
Confidence 888 99999999 999985 688999999999999986 356677777754 799999999998 88
Q ss_pred EEEeCCCcEEEEeCCCcccC
Q 028802 139 GSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 139 ~~~~~d~~i~iwd~~~~~~~ 158 (203)
++++.|+.|++|++......
T Consensus 395 ~s~s~dg~i~iw~~~~~~~~ 414 (430)
T 2xyi_A 395 CSVSEDNIMQVWQMAENVYN 414 (430)
T ss_dssp EEEETTSEEEEEEECHHHHC
T ss_pred EEEECCCCEEEeEccccccc
Confidence 99999999999999876654
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-25 Score=169.14 Aligned_cols=152 Identities=11% Similarity=0.081 Sum_probs=131.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe--EEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc--ceee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC--SDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~--~~~~ 76 (203)
++|+|++++|++++.|+.|++|++.+++ .+..+..|...|.+++|+|++++|++++.|+.|++||+... .. ...+
T Consensus 14 ~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~ 92 (372)
T 1k8k_C 14 HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR-TWKPTLVI 92 (372)
T ss_dssp EEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT-EEEEEEEC
T ss_pred EEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC-eeeeeEEe
Confidence 5799999999999999999999999887 78888899999999999999999999999999999999643 32 2233
Q ss_pred ecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCce---eeee-ccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028802 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI---IQPI-AEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~---~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 151 (203)
.. +...+.++ |+|++++|++++.++.|++||+..+.. ...+ ..|.. .|.+++|+|++++|++++.|+.|++||
T Consensus 93 ~~-~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~~~d 170 (372)
T 1k8k_C 93 LR-INRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS-TVLSLDWHPNSVLLAAGSCDFKCRIFS 170 (372)
T ss_dssp CC-CSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS-CEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ec-CCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCC-CeeEEEEcCCCCEEEEEcCCCCEEEEE
Confidence 55 78889999 999999999999999999999998762 2333 45544 899999999999999999999999999
Q ss_pred CCCc
Q 028802 152 LDDI 155 (203)
Q Consensus 152 ~~~~ 155 (203)
++..
T Consensus 171 ~~~~ 174 (372)
T 1k8k_C 171 AYIK 174 (372)
T ss_dssp CCCT
T ss_pred cccc
Confidence 8643
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-25 Score=165.68 Aligned_cols=153 Identities=14% Similarity=0.195 Sum_probs=137.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe--EEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
++|+|++++|++++.|+.|++|++.+++ ....+..|...|.+++|+|++++|++++.++.|++||+.. +.....+..
T Consensus 103 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~-~~~~~~~~~ 181 (337)
T 1gxr_A 103 CKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-QTLVRQFQG 181 (337)
T ss_dssp EEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECC
T ss_pred EEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC-Cceeeeeec
Confidence 4799999999999999999999999876 5667778889999999999999999999999999999975 567777888
Q ss_pred CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028802 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
|...+.++ |+|+++++++++.++.|++||+++++.+..+... . .+.+++|+|++++|++++.++.|++||+++...
T Consensus 182 -~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~-~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~ 258 (337)
T 1gxr_A 182 -HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT-S-QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK 258 (337)
T ss_dssp -CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS-S-CEEEEEECTTSSEEEEEETTSCEEEEETTSSCE
T ss_pred -ccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCC-C-ceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe
Confidence 89999999 9999999999999999999999999888777543 4 799999999999999999999999999987654
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-25 Score=167.88 Aligned_cols=155 Identities=10% Similarity=0.169 Sum_probs=139.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC-CeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRK-NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
++|+|++++|++++.||.|++||+.+ +..+..+..|...|.+++|+|++.+|++++.++.|++||+.. ...+..+.
T Consensus 181 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~-- 257 (369)
T 3zwl_B 181 AGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST-LQVLKKYE-- 257 (369)
T ss_dssp EEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEE--
T ss_pred EEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCC-Cceeeeec--
Confidence 46899999999999999999999998 788888999999999999999999999999999999999975 45555555
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCC--------------cEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCC
Q 028802 80 SPNSVDAL-LKLDEDRVITGSENG--------------LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~dg--------------~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 144 (203)
+...+..+ |+|++.++++++.++ .+++||+.+++.+..+.+|.. .|.+++|+|++++|++++.|
T Consensus 258 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~d 336 (369)
T 3zwl_B 258 TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFG-PLNTVAISPQGTSYASGGED 336 (369)
T ss_dssp CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSS-CEEEEEECTTSSEEEEEETT
T ss_pred CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccC-cEEEEEECCCCCEEEEEcCC
Confidence 56778888 999999999999888 899999999999999999865 89999999999999999999
Q ss_pred CcEEEEeCCCcccCC
Q 028802 145 SMLKLWDLDDILKGS 159 (203)
Q Consensus 145 ~~i~iwd~~~~~~~~ 159 (203)
|.|++|++.+.....
T Consensus 337 g~v~iw~~~~~~~~~ 351 (369)
T 3zwl_B 337 GFIRLHHFEKSYFDF 351 (369)
T ss_dssp SEEEEEEECHHHHTC
T ss_pred CeEEEEECccccchh
Confidence 999999998876443
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.94 E-value=5.9e-25 Score=165.49 Aligned_cols=150 Identities=17% Similarity=0.221 Sum_probs=125.8
Q ss_pred ccccc--CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 2 TFAAD--AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~--~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
+|+++ ..++++++.|+.|++||+.+++.+..+.+|..+|.+++|+|++++|++++.|+.|++||+.. ...+..+..
T Consensus 178 ~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~-~~~~~~~~~- 255 (340)
T 4aow_A 178 RFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE-GKHLYTLDG- 255 (340)
T ss_dssp EECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTT-TEEEEEEEC-
T ss_pred EEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEecc-CceeeeecC-
Confidence 45554 45788999999999999999999999999999999999999999999999999999999975 456666664
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeec---------cCCCcceEEEEEeCCCCeEEEEeCCCcEEE
Q 028802 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA---------EHSEYPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~---------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 149 (203)
...+.++ |+|++.+ ++++.++.|++||++.+..+..+. .|.. .|++++|+|++++|++++.||.|+|
T Consensus 256 -~~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~s~dg~~l~sgs~Dg~v~i 332 (340)
T 4aow_A 256 -GDIINALCFSPNRYW-LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP-QCTSLAWSADGQTLFAGYTDNLVRV 332 (340)
T ss_dssp -SSCEEEEEECSSSSE-EEEEETTEEEEEETTTTEEEEEECCC-------CCCC-CEEEEEECTTSSEEEEEETTSCEEE
T ss_pred -CceEEeeecCCCCce-eeccCCCEEEEEECCCCeEEEeccccceeeeccCCCC-CEEEEEECCCCCEEEEEeCCCEEEE
Confidence 5678888 8887654 566679999999998876665543 4533 7999999999999999999999999
Q ss_pred EeCCCcc
Q 028802 150 WDLDDIL 156 (203)
Q Consensus 150 wd~~~~~ 156 (203)
||++++.
T Consensus 333 W~~~tGt 339 (340)
T 4aow_A 333 WQVTIGT 339 (340)
T ss_dssp EEEEC--
T ss_pred EeCCCcC
Confidence 9998875
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-25 Score=168.65 Aligned_cols=156 Identities=16% Similarity=0.129 Sum_probs=133.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEE--eecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccc--cceee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD--CSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~--~~~~~ 76 (203)
++|+|++++|++++.|+.|++|++.+++... .+..|...|.+++|+|++++|++++.++.|++||+..... ....+
T Consensus 58 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~ 137 (372)
T 1k8k_C 58 VDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI 137 (372)
T ss_dssp EEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEE
T ss_pred EEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeee
Confidence 4799999999999999999999998886543 3467888999999999999999999999999999975332 12233
Q ss_pred -ecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEc------------------cCCceeeeeccCCCcceEEEEEeCCCC
Q 028802 77 -VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGI------------------LPNRIIQPIAEHSEYPIESLALSHDRK 136 (203)
Q Consensus 77 -~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~ 136 (203)
.. |...+.++ |+|++.++++++.++.|++||+ ..++.+..+..|.. .|.+++|+|+++
T Consensus 138 ~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~ 215 (372)
T 1k8k_C 138 KKP-IRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-WVHGVCFSANGS 215 (372)
T ss_dssp CTT-CCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-CEEEEEECSSSS
T ss_pred ecc-cCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCC-eEEEEEECCCCC
Confidence 44 78889999 9999999999999999999995 36778888888855 899999999999
Q ss_pred eEEEEeCCCcEEEEeCCCcccC
Q 028802 137 FLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 137 ~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
+|++++.|+.|++||++++...
T Consensus 216 ~l~~~~~d~~i~i~d~~~~~~~ 237 (372)
T 1k8k_C 216 RVAWVSHDSTVCLADADKKMAV 237 (372)
T ss_dssp EEEEEETTTEEEEEEGGGTTEE
T ss_pred EEEEEeCCCEEEEEECCCCcee
Confidence 9999999999999999877543
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.4e-25 Score=167.76 Aligned_cols=154 Identities=17% Similarity=0.239 Sum_probs=133.8
Q ss_pred Cccccc--CCEEEEEcCCCeEEEEEcCCCe--EEEeecCCcccEEEEEEeeC--CCEEEEecCCCeEEEEEcCCcc-ccc
Q 028802 1 MTFAAD--AMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFK-DCS 73 (203)
Q Consensus 1 l~~sp~--~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~i~~l~~~~~--~~~l~~~~~d~~i~v~d~~~~~-~~~ 73 (203)
|+|+|+ +++|++++.|+.|++||+.+++ .+..+..|...|.+++|+|+ +.+|++++.++.|++||+.... ...
T Consensus 61 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~ 140 (379)
T 3jrp_A 61 VDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP 140 (379)
T ss_dssp EEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCE
T ss_pred EEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceee
Confidence 468877 8999999999999999999886 67778889999999999999 9999999999999999997542 233
Q ss_pred eeeecCCCCceeEE-Eee-------------CCCEEEEEcCCCcEEEEEccCCc----eeeeeccCCCcceEEEEEeCC-
Q 028802 74 DRFVGLSPNSVDAL-LKL-------------DEDRVITGSENGLISLVGILPNR----IIQPIAEHSEYPIESLALSHD- 134 (203)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~-------------~~~~l~~~~~dg~v~v~d~~~~~----~~~~~~~~~~~~i~~~~~~~~- 134 (203)
..+.. |...+.++ |+| ++.++++++.|+.|++||++++. .+..+..|.. .|.+++|+|+
T Consensus 141 ~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~~ 218 (379)
T 3jrp_A 141 IIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTV 218 (379)
T ss_dssp EEEEC-CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCC
T ss_pred EEecC-CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccC-cEeEEEECCCC
Confidence 45566 88899999 999 69999999999999999998764 4456777855 8999999999
Q ss_pred --CCeEEEEeCCCcEEEEeCCCcc
Q 028802 135 --RKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 135 --~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+.+|++++.|+.|++||+++..
T Consensus 219 ~~~~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 219 LLRSYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp SSSEEEEEEETTSCEEEEEESSTT
T ss_pred CCCCeEEEEeCCCEEEEEeCCCCC
Confidence 8999999999999999998863
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=175.02 Aligned_cols=154 Identities=12% Similarity=0.159 Sum_probs=128.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe-----------EEEeecCCc------------ccEEEEEEeeCC--CEEEEe
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT-----------VQTRSEFSE------------EELTSVVLMKNG--RKVVCG 55 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~-----------~~~~~~~~~------------~~i~~l~~~~~~--~~l~~~ 55 (203)
|+|+|+|++|++|+.||.|+||++.++. ....+.+|. ..|.+++|+|++ ..|+++
T Consensus 34 v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~ 113 (447)
T 3dw8_B 34 VEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLS 113 (447)
T ss_dssp EEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEe
Confidence 5799999999999999999999998766 477888888 889999999998 799999
Q ss_pred cCCCeEEEEEcCCcccc--------------------------------------cee-eecCCCCceeEE-EeeCCCEE
Q 028802 56 SQSGTVLLYSWGYFKDC--------------------------------------SDR-FVGLSPNSVDAL-LKLDEDRV 95 (203)
Q Consensus 56 ~~d~~i~v~d~~~~~~~--------------------------------------~~~-~~~~~~~~v~~~-~~~~~~~l 95 (203)
+.|+.|++|++...... ... ..+ |...|.++ |+|++++|
T Consensus 114 s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l 192 (447)
T 3dw8_B 114 TNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA-HTYHINSISINSDYETY 192 (447)
T ss_dssp ECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC-CSSCCCEEEECTTSSEE
T ss_pred CCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC-CCcceEEEEEcCCCCEE
Confidence 99999999998642110 012 246 88899999 99999999
Q ss_pred EEEcCCCcEEEEEccC-Cceee-------eeccCCCcceEEEEEeCCC-CeEEEEeCCCcEEEEeCCCccc
Q 028802 96 ITGSENGLISLVGILP-NRIIQ-------PIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 96 ~~~~~dg~v~v~d~~~-~~~~~-------~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
+++ .|+.|++||+++ ++.+. .+..|.. .|.+++|+|++ .+|++++.|+.|++||++++..
T Consensus 193 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 261 (447)
T 3dw8_B 193 LSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTE-VITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL 261 (447)
T ss_dssp EEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCC-CEEEEEECSSCTTEEEEEETTSCEEEEETTTCSS
T ss_pred EEe-CCCeEEEEECCCCCceeeeeecccccccccCc-ceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcc
Confidence 998 799999999984 44444 3557754 89999999998 9999999999999999988764
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-25 Score=172.97 Aligned_cols=155 Identities=14% Similarity=0.142 Sum_probs=132.8
Q ss_pred cccccCCEE-EEEcCCCeEEEEEcCCCe----EEEeecCCcccEEEEEEee-CCCEEEEecCCCeEEEEEcCCcc-----
Q 028802 2 TFAADAMKL-LGTSGDGTLSVCNLRKNT----VQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFK----- 70 (203)
Q Consensus 2 ~~sp~~~~l-~~~~~d~~i~v~d~~~~~----~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d~~~~~----- 70 (203)
+++|+...+ ++++.+|.|+||++.... .+..+.+|...|.+++|+| ++.+|++++.|+.|++|++....
T Consensus 41 ~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~ 120 (402)
T 2aq5_A 41 AVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPL 120 (402)
T ss_dssp EECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCB
T ss_pred EECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcccc
Confidence 456665544 457889999999996542 2345678999999999999 99999999999999999997542
Q ss_pred -ccceeeecCCCCceeEE-EeeCC-CEEEEEcCCCcEEEEEccCCceeeee--ccCCCcceEEEEEeCCCCeEEEEeCCC
Q 028802 71 -DCSDRFVGLSPNSVDAL-LKLDE-DRVITGSENGLISLVGILPNRIIQPI--AEHSEYPIESLALSHDRKFLGSISHDS 145 (203)
Q Consensus 71 -~~~~~~~~~~~~~v~~~-~~~~~-~~l~~~~~dg~v~v~d~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d~ 145 (203)
..+..+.+ |...|.++ |+|++ .+|++++.|+.|++||+.+++.+..+ ..|.. .|.+++|+|++++|++++.|+
T Consensus 121 ~~~~~~~~~-h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~ 198 (402)
T 2aq5_A 121 REPVITLEG-HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPD-TIYSVDWSRDGALICTSCRDK 198 (402)
T ss_dssp CSCSEEEEC-CSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCS-CEEEEEECTTSSCEEEEETTS
T ss_pred CCceEEecC-CCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCC-ceEEEEECCCCCEEEEEecCC
Confidence 45677888 99999999 99998 69999999999999999999999888 77755 899999999999999999999
Q ss_pred cEEEEeCCCcccC
Q 028802 146 MLKLWDLDDILKG 158 (203)
Q Consensus 146 ~i~iwd~~~~~~~ 158 (203)
.|++||++++...
T Consensus 199 ~i~iwd~~~~~~~ 211 (402)
T 2aq5_A 199 RVRVIEPRKGTVV 211 (402)
T ss_dssp EEEEEETTTTEEE
T ss_pred cEEEEeCCCCcee
Confidence 9999999887644
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=7e-26 Score=190.92 Aligned_cols=149 Identities=11% Similarity=0.115 Sum_probs=125.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEE----Ee--ec-----CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCc
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ----TR--SE-----FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~----~~--~~-----~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~ 69 (203)
++|+|++++|++|+.|++|++||+.++... .. +. +|...|.+++|+|++++|++++.|++|++|++...
T Consensus 441 v~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~ 520 (902)
T 2oaj_A 441 KLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVN 520 (902)
T ss_dssp CCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEEC
T ss_pred ccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCc
Confidence 478999999999999999999999876321 11 11 78889999999999999999999999999999643
Q ss_pred c--------------------------------------------ccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcE
Q 028802 70 K--------------------------------------------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLI 104 (203)
Q Consensus 70 ~--------------------------------------------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v 104 (203)
. .++..+.+ |...|+++ |+|+| +|++|+.|+.|
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~-h~~~V~svafSpdG-~lAsgs~D~tv 598 (902)
T 2oaj_A 521 QFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHA-NKGKTSAINNSNIG-FVGIAYAAGSL 598 (902)
T ss_dssp CC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECC-CSCSEEEEEECBTS-EEEEEETTSEE
T ss_pred cccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEc-CCCcEEEEEecCCc-EEEEEeCCCcE
Confidence 1 12456777 89999999 99999 99999999999
Q ss_pred EEEEccCCceee-----eec-cCCCcceEEEEEe-----CCC---CeEEEEeCCCcEEEEeC
Q 028802 105 SLVGILPNRIIQ-----PIA-EHSEYPIESLALS-----HDR---KFLGSISHDSMLKLWDL 152 (203)
Q Consensus 105 ~v~d~~~~~~~~-----~~~-~~~~~~i~~~~~~-----~~~---~~l~~~~~d~~i~iwd~ 152 (203)
++||+++...+. .+. +|.. .|++++|+ ||| ++|++++.|++|++||+
T Consensus 599 ~lwd~~~~~~~~~~~~~~~~~gh~~-~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 599 MLIDRRGPAIIYMENIREISGAQSA-CVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp EEEETTTTEEEEEEEGGGTCSSCCC-CEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred EEEECCCCeEEEEeehhHhcccccc-ceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 999998776553 232 6754 89999999 886 89999999999999999
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.8e-25 Score=165.69 Aligned_cols=152 Identities=13% Similarity=0.058 Sum_probs=124.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcC---------CCeEEEeec-CCcccEEEEEEee--CCCEEEEecCCCeEEEEEcCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLR---------KNTVQTRSE-FSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGY 68 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~---------~~~~~~~~~-~~~~~i~~l~~~~--~~~~l~~~~~d~~i~v~d~~~ 68 (203)
+.|+|+ +++++.|++|++|+.. +++.+..+. .|..+|.+++|+| ++++|++++.|+.|++||+..
T Consensus 82 ~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~ 158 (343)
T 3lrv_A 82 GGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYED 158 (343)
T ss_dssp TCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSS
T ss_pred eeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCC
Confidence 356776 8999999999999765 444344443 5668899999999 999999999999999999985
Q ss_pred ccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCcee-eeecc-CCCcceEEEEEeCCCCeEEEEeCCC
Q 028802 69 FKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRII-QPIAE-HSEYPIESLALSHDRKFLGSISHDS 145 (203)
Q Consensus 69 ~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~-~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~ 145 (203)
+.........+...+.++ |+|++.+|++|+.||.|++||+++++.+ ..+.. |.. +|.+++|+|++.+|++++ ++
T Consensus 159 -~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~-~v~~l~fs~~g~~l~s~~-~~ 235 (343)
T 3lrv_A 159 -DSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEA-KIKEVKFADNGYWMVVEC-DQ 235 (343)
T ss_dssp -SCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTS-CEEEEEECTTSSEEEEEE-SS
T ss_pred -CcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCC-CEEEEEEeCCCCEEEEEe-CC
Confidence 344444433145578899 9999999999999999999999999877 77877 755 899999999999999999 55
Q ss_pred cEEEEeCCCcccC
Q 028802 146 MLKLWDLDDILKG 158 (203)
Q Consensus 146 ~i~iwd~~~~~~~ 158 (203)
.|++||+++....
T Consensus 236 ~v~iwd~~~~~~~ 248 (343)
T 3lrv_A 236 TVVCFDLRKDVGT 248 (343)
T ss_dssp BEEEEETTSSTTC
T ss_pred eEEEEEcCCCCcc
Confidence 9999999987654
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.5e-25 Score=167.07 Aligned_cols=151 Identities=15% Similarity=0.202 Sum_probs=128.5
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEee---CCCEEEEecCCCeEEEEEcCCccccceeee-
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK---NGRKVVCGSQSGTVLLYSWGYFKDCSDRFV- 77 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~---~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~- 77 (203)
+|+|++++|++++.|+.|++||+.+++.... ..|...|.+++|+| ++.+|++++.++.|++||+.. ......+.
T Consensus 175 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~ 252 (357)
T 3i2n_A 175 AYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT-QHPTKGFAS 252 (357)
T ss_dssp CCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE-EETTTEEEE
T ss_pred ccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC-CCcccceee
Confidence 4889999999999999999999999877544 55788999999999 999999999999999999975 34444443
Q ss_pred ----cCCCCceeEE-EeeCCC-EEEEEcCCCcEEEEEccCC-------------------ceeeeeccCCCcceEEEEEe
Q 028802 78 ----GLSPNSVDAL-LKLDED-RVITGSENGLISLVGILPN-------------------RIIQPIAEHSEYPIESLALS 132 (203)
Q Consensus 78 ----~~~~~~v~~~-~~~~~~-~l~~~~~dg~v~v~d~~~~-------------------~~~~~~~~~~~~~i~~~~~~ 132 (203)
. |...+.++ |+|++. ++++++.||.|++||++.+ +.+..+..|.. .|.+++|+
T Consensus 253 ~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~v~~~~~s 330 (357)
T 3i2n_A 253 VSEKA-HKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQ-PISSLDWS 330 (357)
T ss_dssp EEEEC-CSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSS-CEEEEEEC
T ss_pred eccCC-CcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCC-CeeEEEEc
Confidence 7 89999999 999998 8999999999999999854 35666778855 89999999
Q ss_pred CCCCeEE-EEeCCCcEEEEeCCCcc
Q 028802 133 HDRKFLG-SISHDSMLKLWDLDDIL 156 (203)
Q Consensus 133 ~~~~~l~-~~~~d~~i~iwd~~~~~ 156 (203)
|++++|+ +++.|+.|++|++.+..
T Consensus 331 ~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 331 PDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp SSSTTEEEEEETTSEEEEEEECC--
T ss_pred CCCCeEEEEecCCCcEEEEECCCcc
Confidence 9999998 79999999999998653
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-25 Score=167.25 Aligned_cols=154 Identities=12% Similarity=0.119 Sum_probs=124.0
Q ss_pred Ccccc--cCCEEEEEcCCCeEEEEEcCCCeEEEeec-CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee
Q 028802 1 MTFAA--DAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 77 (203)
|+|+| ++++|++++.|++|++||+.+++...... .+...+.+++|+|++.+|++|+.|+.|++||++........+.
T Consensus 131 ~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~ 210 (343)
T 3lrv_A 131 MYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFP 210 (343)
T ss_dssp EECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECC
T ss_pred EEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEe
Confidence 46899 99999999999999999999988866654 4455799999999999999999999999999986433314444
Q ss_pred cCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeecc---CCCcceE--EEEEeCCCCeEEEEeC-CCcEEEE
Q 028802 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAE---HSEYPIE--SLALSHDRKFLGSISH-DSMLKLW 150 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~---~~~~~i~--~~~~~~~~~~l~~~~~-d~~i~iw 150 (203)
..|...|.++ |+|++.+|++++ ++.|++||+++++.+..+.. |. ..+. +++|+|++++|++++. |+.|++|
T Consensus 211 ~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~ 288 (343)
T 3lrv_A 211 VDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPE-FKTGTVTYDIDDSGKNMIAYSNESNSLTIY 288 (343)
T ss_dssp CCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC------CCEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred ccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccccccc-ccccceEEEECCCCCEEEEecCCCCcEEEE
Confidence 2278899999 999999999999 55999999998877655543 21 1333 6999999999999998 9999999
Q ss_pred eCCCcc
Q 028802 151 DLDDIL 156 (203)
Q Consensus 151 d~~~~~ 156 (203)
++.+..
T Consensus 289 ~~~~~~ 294 (343)
T 3lrv_A 289 KFDKKT 294 (343)
T ss_dssp EECTTT
T ss_pred EEcccc
Confidence 986543
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=179.01 Aligned_cols=155 Identities=12% Similarity=0.028 Sum_probs=129.6
Q ss_pred Cccccc------CCEEEEEcCCCeEEEEEcCCCeE-----------EEeecCCcccEEEEEEeeCCCEEEEecCCCeEEE
Q 028802 1 MTFAAD------AMKLLGTSGDGTLSVCNLRKNTV-----------QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLL 63 (203)
Q Consensus 1 l~~sp~------~~~l~~~~~d~~i~v~d~~~~~~-----------~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v 63 (203)
|+|+|+ +.+||+++.||+|++|++.++.. ...+.+|...|.+++|+++ ..|++|+.||+|++
T Consensus 213 v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~l 291 (524)
T 2j04_B 213 LKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAE 291 (524)
T ss_dssp EEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEE
T ss_pred EEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEE
Confidence 468876 67999999999999999976531 2356788899999999986 48999999999999
Q ss_pred EEcCCccccceeeecCCCCceeEE---EeeCC-CEEEEEcCCCcEEEEEccCCceeeeeccCCC-cceEEEEEeCCCCeE
Q 028802 64 YSWGYFKDCSDRFVGLSPNSVDAL---LKLDE-DRVITGSENGLISLVGILPNRIIQPIAEHSE-YPIESLALSHDRKFL 138 (203)
Q Consensus 64 ~d~~~~~~~~~~~~~~~~~~v~~~---~~~~~-~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l 138 (203)
||+.....+...+.. |...|.++ |+|++ .+|++++.|++|+|||+++++++.++.+|.. ..|.+++|+|+++.|
T Consensus 292 WD~~~~~~~~~~~~~-H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l 370 (524)
T 2j04_B 292 FDLTDPEVPSFYDQV-HDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSY 370 (524)
T ss_dssp EETTBCSSCSEEEEC-SSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEE
T ss_pred EECCCCCCceEEeec-ccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeE
Confidence 999854445566788 99999988 36777 8999999999999999998887777766642 247889999999999
Q ss_pred EEEeCCCcEEEEeCCCccc
Q 028802 139 GSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 139 ~~~~~d~~i~iwd~~~~~~ 157 (203)
++++.|++|++||++++..
T Consensus 371 ~s~~~d~tv~lwd~~~~~~ 389 (524)
T 2j04_B 371 IYSDGASSLRAVPSRAAFA 389 (524)
T ss_dssp EEECSSSEEEEEETTCTTC
T ss_pred EEeCCCCcEEEEECccccc
Confidence 9999999999999988654
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-24 Score=164.96 Aligned_cols=155 Identities=14% Similarity=0.155 Sum_probs=135.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCC-----CeEEEEEcCCccc----
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS-----GTVLLYSWGYFKD---- 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~---- 71 (203)
++|+|++++|++++.|+.|++||+.+++.+..+. +...+.+++|+|++.+|++++.+ +.|++||+.....
T Consensus 80 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~ 158 (369)
T 3zwl_B 80 IDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHEL 158 (369)
T ss_dssp EEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceee
Confidence 4799999999999999999999999998888877 78889999999999999999998 9999999975321
Q ss_pred ------cceeeecCCCC--ceeEE-EeeCCCEEEEEcCCCcEEEEEccC-CceeeeeccCCCcceEEEEEeCCCCeEEEE
Q 028802 72 ------CSDRFVGLSPN--SVDAL-LKLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSI 141 (203)
Q Consensus 72 ------~~~~~~~~~~~--~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 141 (203)
....+.. +.. .+.++ |+|+++++++++.+|.|++||+++ +..+..+..|.. .|.+++|+|++++|+++
T Consensus 159 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~ 236 (369)
T 3zwl_B 159 TKVSEEPIHKIIT-HEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEK-SISDMQFSPDLTYFITS 236 (369)
T ss_dssp EEECSSCSEEEEC-CTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSS-CEEEEEECTTSSEEEEE
T ss_pred cccccceeeeccC-CcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCC-ceeEEEECCCCCEEEEe
Confidence 2233344 444 78888 999999999999999999999998 778888888855 89999999999999999
Q ss_pred eCCCcEEEEeCCCcccC
Q 028802 142 SHDSMLKLWDLDDILKG 158 (203)
Q Consensus 142 ~~d~~i~iwd~~~~~~~ 158 (203)
+.|+.|++||++++...
T Consensus 237 ~~d~~i~v~d~~~~~~~ 253 (369)
T 3zwl_B 237 SRDTNSFLVDVSTLQVL 253 (369)
T ss_dssp ETTSEEEEEETTTCCEE
T ss_pred cCCceEEEEECCCCcee
Confidence 99999999999887544
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-25 Score=170.36 Aligned_cols=152 Identities=13% Similarity=0.160 Sum_probs=133.0
Q ss_pred Cccccc----CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEee-CCCEEEEecCCCeEEEEEcCCcccccee
Q 028802 1 MTFAAD----AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 1 l~~sp~----~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 75 (203)
++|+|+ +++|++|+.||.|++||+.+++.+..+..|...|.+++|+| ++.+|++++.|+.|++||+.. +..+..
T Consensus 75 ~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~ 153 (366)
T 3k26_A 75 CAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT-DTLVAI 153 (366)
T ss_dssp EEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT-TEEEEE
T ss_pred EEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec-CeEEEE
Confidence 468888 67999999999999999999999999999999999999999 899999999999999999975 455555
Q ss_pred e---ecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeecc----------------------------CCC
Q 028802 76 F---VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAE----------------------------HSE 123 (203)
Q Consensus 76 ~---~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~----------------------------~~~ 123 (203)
+ .. |...+.++ |+|++.+|++++.||.|++||+++++.+..+.. |..
T Consensus 154 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (366)
T 3k26_A 154 FGGVEG-HRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN 232 (366)
T ss_dssp ECSTTS-CSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS
T ss_pred eccccc-ccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcc
Confidence 5 56 88999999 999999999999999999999987765444332 644
Q ss_pred cceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028802 124 YPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 124 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
.|.+++|+ +.+|++++.|+.|++||+.+...
T Consensus 233 -~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~ 263 (366)
T 3k26_A 233 -YVDCVRWL--GDLILSKSCENAIVCWKPGKMED 263 (366)
T ss_dssp -CCCEEEEE--TTEEEEECSSSEEEEEEESSTTC
T ss_pred -eEEEEEEc--CCEEEEEecCCEEEEEeCCCccc
Confidence 89999998 77999999999999999987654
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.4e-25 Score=165.96 Aligned_cols=110 Identities=13% Similarity=0.173 Sum_probs=96.0
Q ss_pred Cccccc---CCEEEEEcCCCeEEEEEcCC-CeEE-EeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcccccee
Q 028802 1 MTFAAD---AMKLLGTSGDGTLSVCNLRK-NTVQ-TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 1 l~~sp~---~~~l~~~~~d~~i~v~d~~~-~~~~-~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 75 (203)
|+|+|+ |++|++|+.||.|++|++.+ +..+ ..+..|...|.+++|+|++++|++++.|+.|++||+.. +... .
T Consensus 45 ~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~-~ 122 (368)
T 3mmy_A 45 LSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSS-NQAI-Q 122 (368)
T ss_dssp EEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEE-E
T ss_pred EEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCC-CCce-e
Confidence 579998 69999999999999999987 4444 67788999999999999999999999999999999975 3433 4
Q ss_pred eecCCCCceeEE-E--eeCCCEEEEEcCCCcEEEEEccCCc
Q 028802 76 FVGLSPNSVDAL-L--KLDEDRVITGSENGLISLVGILPNR 113 (203)
Q Consensus 76 ~~~~~~~~v~~~-~--~~~~~~l~~~~~dg~v~v~d~~~~~ 113 (203)
+.. |...+.++ | +|++.+|++++.|+.|++||+++++
T Consensus 123 ~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 162 (368)
T 3mmy_A 123 IAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN 162 (368)
T ss_dssp EEE-CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS
T ss_pred ecc-ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc
Confidence 566 89999999 8 8899999999999999999987654
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.93 E-value=6.5e-25 Score=166.58 Aligned_cols=154 Identities=14% Similarity=0.223 Sum_probs=132.1
Q ss_pred Cccccc----CCEEEEEcCCCeEEEEEcCCCeEEEeecC-----CcccEEEEEEeeC----CCEEEEecCCCeEEEEEcC
Q 028802 1 MTFAAD----AMKLLGTSGDGTLSVCNLRKNTVQTRSEF-----SEEELTSVVLMKN----GRKVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 1 l~~sp~----~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-----~~~~i~~l~~~~~----~~~l~~~~~d~~i~v~d~~ 67 (203)
|+|+|+ ...+++++.++.|++|++.+++.+..+.. |...|.+++|+|+ +.+|++++.++.|++||+.
T Consensus 24 i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~ 103 (366)
T 3k26_A 24 VQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPI 103 (366)
T ss_dssp EEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTT
T ss_pred EEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEch
Confidence 468874 45666666678999999997765555542 5578999999998 6799999999999999997
Q ss_pred CccccceeeecCCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCceeeee---ccCCCcceEEEEEeCCCCeEEEEe
Q 028802 68 YFKDCSDRFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPI---AEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 68 ~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~dg~v~v~d~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~ 142 (203)
. +..+..+.. |...|.++ |+| ++.+|++++.||.|++||+++++.+..+ ..|.. .|.+++|+|++++|++++
T Consensus 104 ~-~~~~~~~~~-~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~ 180 (366)
T 3k26_A 104 T-MQCIKHYVG-HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD-EVLSADYDLLGEKIMSCG 180 (366)
T ss_dssp T-CCEEEEEES-CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSS-CEEEEEECTTSSEEEEEE
T ss_pred h-ceEeeeecC-CCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccC-ceeEEEECCCCCEEEEec
Confidence 5 577788888 99999999 999 9999999999999999999999888887 56744 899999999999999999
Q ss_pred CCCcEEEEeCCCccc
Q 028802 143 HDSMLKLWDLDDILK 157 (203)
Q Consensus 143 ~d~~i~iwd~~~~~~ 157 (203)
.|+.|++||+++...
T Consensus 181 ~dg~i~i~d~~~~~~ 195 (366)
T 3k26_A 181 MDHSLKLWRINSKRM 195 (366)
T ss_dssp TTSCEEEEESCSHHH
T ss_pred CCCCEEEEECCCCcc
Confidence 999999999988754
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-24 Score=165.53 Aligned_cols=152 Identities=13% Similarity=0.117 Sum_probs=127.5
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCC-EEEEecCCCeEEEEEcCCccccceee--------
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSDRF-------- 76 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~-------- 76 (203)
++.++++++.++.|++||+.++..+..+..|...|.+++|+|++. .|++++.++.|++||++.....+..+
T Consensus 155 ~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 234 (408)
T 4a11_B 155 KHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKS 234 (408)
T ss_dssp SCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSC
T ss_pred CCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccc
Confidence 566999999999999999999988889999999999999999998 58899999999999997644333333
Q ss_pred -------ecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc-----------------------------------
Q 028802 77 -------VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR----------------------------------- 113 (203)
Q Consensus 77 -------~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~----------------------------------- 113 (203)
.. |...+.++ |+|++.+|++++.|+.|++||+.+++
T Consensus 235 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (408)
T 4a11_B 235 QAVESANTA-HNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYG 313 (408)
T ss_dssp CCTTTSSCS-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEET
T ss_pred eeecccccc-ccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecC
Confidence 45 77889999 99999999999999999999987543
Q ss_pred ------------eeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028802 114 ------------IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 114 ------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
.+..+.+|.. .|.+++|+|++++|++++.||.|++|++.+.++..
T Consensus 314 ~~i~v~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 314 STIAVYTVYSGEQITMLKGHYK-TVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVP 370 (408)
T ss_dssp TEEEEEETTTCCEEEEECCCSS-CEEEEEEETTTTEEEEEETTSCEEEEEECC-----
T ss_pred CEEEEEECcCCcceeeeccCCC-eEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccC
Confidence 3445566744 89999999999999999999999999999876543
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-24 Score=168.82 Aligned_cols=154 Identities=20% Similarity=0.272 Sum_probs=134.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEee--CCCEEEEecCCCeEEEEEcCCcccc------
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFKDC------ 72 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~------ 72 (203)
++|+|++ +|++|+.||+|++||+.+++.+..+.+|...|.+++|++ ++.+|++++.|+.|++||+......
T Consensus 168 l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 246 (464)
T 3v7d_B 168 LKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE 246 (464)
T ss_dssp EEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------
T ss_pred EEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccccccccc
Confidence 4688877 899999999999999999999999999999999999995 7789999999999999999753221
Q ss_pred ----------------ceeeecCCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCC
Q 028802 73 ----------------SDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK 136 (203)
Q Consensus 73 ----------------~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 136 (203)
...+.+ |...+.++ ++++.++++++.|+.|++||+++++++..+.+|.. .|.+++|+|+++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~-~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~ 323 (464)
T 3v7d_B 247 HDYPLVFHTPEENPYFVGVLRG-HMASVRTV-SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD-RIYSTIYDHERK 323 (464)
T ss_dssp CCSSEEESCGGGCTTEEEEECC-CSSCEEEE-EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEEETTTT
T ss_pred CCcceEeeccCCCeEEEEEccC-ccceEEEE-cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC-CEEEEEEcCCCC
Confidence 334455 66666665 78899999999999999999999999999998865 899999999999
Q ss_pred eEEEEeCCCcEEEEeCCCcccC
Q 028802 137 FLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 137 ~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
+|++++.|+.|++||++++...
T Consensus 324 ~l~sg~~dg~i~vwd~~~~~~~ 345 (464)
T 3v7d_B 324 RCISASMDTTIRIWDLENGELM 345 (464)
T ss_dssp EEEEEETTSCEEEEETTTTEEE
T ss_pred EEEEEeCCCcEEEEECCCCcEE
Confidence 9999999999999999887654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.93 E-value=7.4e-25 Score=182.44 Aligned_cols=156 Identities=17% Similarity=0.202 Sum_probs=141.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++++.||.|++|++.+++.+..+..|...|.+++|+|++.+|++++.|+.|++|++.........+.. |
T Consensus 61 ~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-~ 139 (814)
T 3mkq_A 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG-H 139 (814)
T ss_dssp EEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEEC-C
T ss_pred EEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcC-C
Confidence 479999999999999999999999999999999999999999999999999999999999999999865466677888 9
Q ss_pred CCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeC--CCCeEEEEeCCCcEEEEeCCCcc
Q 028802 81 PNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH--DRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 81 ~~~v~~~-~~~-~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
...+.++ |+| ++..+++++.+|.|++||+.++.....+..+....+.+++|+| ++.+|++++.|+.|++||+.++.
T Consensus 140 ~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 219 (814)
T 3mkq_A 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS 219 (814)
T ss_dssp SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE
T ss_pred CCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence 9999999 999 8899999999999999999988877777666534899999999 99999999999999999998765
Q ss_pred c
Q 028802 157 K 157 (203)
Q Consensus 157 ~ 157 (203)
.
T Consensus 220 ~ 220 (814)
T 3mkq_A 220 C 220 (814)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-24 Score=159.14 Aligned_cols=150 Identities=15% Similarity=0.183 Sum_probs=132.0
Q ss_pred cccc-cCCEEEEEcCCCeEEEEEcCCCeEEEeecC-CcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 2 TFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
+|+| ++++|++++.|+.|++|| .......+.. |...+.+++|+|++. +++++.++.|++||+.. +..+..+..
T Consensus 149 ~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~-~~~~~~~~~- 223 (313)
T 3odt_A 149 KVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHT-GDVLRTYEG- 223 (313)
T ss_dssp EEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTT-CCEEEEEEC-
T ss_pred EEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCc-hhhhhhhhc-
Confidence 4666 899999999999999999 4456666666 889999999999988 89999999999999975 577788888
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
|...+.++ |+|++ .+++++.+|.|++||+.+++.+..+..|.. .|.+++|+|+++ +++++.|+.|++|++.+....
T Consensus 224 ~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 224 HESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAI-SIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp CSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSS-CEEEEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred CCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCc-eEEEEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence 99999999 99999 688999999999999999999999988855 899999999998 667889999999999887654
Q ss_pred C
Q 028802 159 S 159 (203)
Q Consensus 159 ~ 159 (203)
.
T Consensus 301 ~ 301 (313)
T 3odt_A 301 S 301 (313)
T ss_dssp C
T ss_pred e
Confidence 3
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=168.35 Aligned_cols=154 Identities=14% Similarity=0.222 Sum_probs=130.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCC-CEEEEec--CCCeEEEEEcCCccccceeee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG-RKVVCGS--QSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~--~d~~i~v~d~~~~~~~~~~~~ 77 (203)
++|+|++++|++++.|+.|++||+.++..+..+..|...|.+++|+|++ .++++++ .|+.|++||+.. +..+..+.
T Consensus 223 ~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~-~~~~~~~~ 301 (401)
T 4aez_A 223 LAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT-GARVNTVD 301 (401)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT-CCEEEEEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC-CCEEEEEe
Confidence 4799999999999999999999999998988999999999999999976 5566654 799999999975 46666665
Q ss_pred cCCCCceeEE-EeeCCCEEEE--EcCCCcEEEEEccCCceee--eeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028802 78 GLSPNSVDAL-LKLDEDRVIT--GSENGLISLVGILPNRIIQ--PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~--~~~dg~v~v~d~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
+...+.++ |+|++.++++ |+.+|.|++|++.++.... .+.+|.. .|.+++|+|++++|++++.|+.|++|++
T Consensus 302 --~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~-~v~~~~~s~dg~~l~s~~~dg~i~iw~~ 378 (401)
T 4aez_A 302 --AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDT-RVLYSALSPDGRILSTAASDENLKFWRV 378 (401)
T ss_dssp --CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSS-CCCEEEECTTSSEEEEECTTSEEEEEEC
T ss_pred --CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCC-CEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 56788999 9999999999 4489999999999865544 3567754 8999999999999999999999999999
Q ss_pred CCcccC
Q 028802 153 DDILKG 158 (203)
Q Consensus 153 ~~~~~~ 158 (203)
.++...
T Consensus 379 ~~~~~~ 384 (401)
T 4aez_A 379 YDGDHV 384 (401)
T ss_dssp CC----
T ss_pred CCCccc
Confidence 887654
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.5e-25 Score=170.27 Aligned_cols=154 Identities=12% Similarity=0.216 Sum_probs=128.8
Q ss_pred CcccccC--CEEEEEcCCCeEEEEEcCCCeEE---------------------------------------Ee-ecCCcc
Q 028802 1 MTFAADA--MKLLGTSGDGTLSVCNLRKNTVQ---------------------------------------TR-SEFSEE 38 (203)
Q Consensus 1 l~~sp~~--~~l~~~~~d~~i~v~d~~~~~~~---------------------------------------~~-~~~~~~ 38 (203)
|+|+|++ .+|++++.|++|++|++.++... .. ..+|..
T Consensus 99 l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 178 (447)
T 3dw8_B 99 IRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTY 178 (447)
T ss_dssp EEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSS
T ss_pred EEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCc
Confidence 4799998 79999999999999998764331 12 357899
Q ss_pred cEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce-------eeecCCCCceeEE-EeeCC-CEEEEEcCCCcEEEEEc
Q 028802 39 ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD-------RFVGLSPNSVDAL-LKLDE-DRVITGSENGLISLVGI 109 (203)
Q Consensus 39 ~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-------~~~~~~~~~v~~~-~~~~~-~~l~~~~~dg~v~v~d~ 109 (203)
.|.+++|+|++++|+++ .|+.|++||+......+. .+.. |...+.++ |+|++ .+|++++.||.|++||+
T Consensus 179 ~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 256 (447)
T 3dw8_B 179 HINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEE-LTEVITAAEFHPNSCNTFVYSSSKGTIRLCDM 256 (447)
T ss_dssp CCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGG-CCCCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred ceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccc-cCcceEEEEECCCCCcEEEEEeCCCeEEEEEC
Confidence 99999999999999998 799999999974444443 3556 88899999 99998 99999999999999999
Q ss_pred cCCce----eeeeccCCC-----------cceEEEEEeCCCCeEEEEeCCCcEEEEeCCC-ccc
Q 028802 110 LPNRI----IQPIAEHSE-----------YPIESLALSHDRKFLGSISHDSMLKLWDLDD-ILK 157 (203)
Q Consensus 110 ~~~~~----~~~~~~~~~-----------~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~ 157 (203)
++++. +..+..|.. ..|.+++|+|++++|++++. +.|++||+++ ..+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~ 319 (447)
T 3dw8_B 257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRP 319 (447)
T ss_dssp TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSC
T ss_pred cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccc
Confidence 98876 677777743 27999999999999999998 9999999987 443
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-24 Score=177.34 Aligned_cols=155 Identities=22% Similarity=0.308 Sum_probs=132.0
Q ss_pred CcccccC-CEEEEEcCCCeEEEEEcCC-----CeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce
Q 028802 1 MTFAADA-MKLLGTSGDGTLSVCNLRK-----NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~-~~l~~~~~d~~i~v~d~~~-----~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~ 74 (203)
|+|+|++ ++|++|+.|++|++|++.+ +.....+.+|...|.+++|+|++++|++++.|+.|++||+.. +....
T Consensus 388 v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~-~~~~~ 466 (694)
T 3dm0_A 388 IATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAA-GVSTR 466 (694)
T ss_dssp EECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEE
T ss_pred EEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC-Cccee
Confidence 4678764 7999999999999999875 345567889999999999999999999999999999999975 56777
Q ss_pred eeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeee---ccCCCcceEEEEEeCCC--CeEEEEeCCCcEE
Q 028802 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI---AEHSEYPIESLALSHDR--KFLGSISHDSMLK 148 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~---~~~~~~~i~~~~~~~~~--~~l~~~~~d~~i~ 148 (203)
.+.+ |...|.++ |+|++.+|++++.|+.|++||+......... .+|.. .|.+++|+|++ ..|++++.|+.|+
T Consensus 467 ~~~~-h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~l~s~s~d~~v~ 544 (694)
T 3dm0_A 467 RFVG-HTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRD-WVSCVRFSPNTLQPTIVSASWDKTVK 544 (694)
T ss_dssp EEEC-CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSS-CEEEEEECSCSSSCEEEEEETTSCEE
T ss_pred EEeC-CCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCC-cEEEEEEeCCCCcceEEEEeCCCeEE
Confidence 8888 99999999 9999999999999999999998654333222 35544 79999999987 5799999999999
Q ss_pred EEeCCCcccC
Q 028802 149 LWDLDDILKG 158 (203)
Q Consensus 149 iwd~~~~~~~ 158 (203)
+||+++....
T Consensus 545 vwd~~~~~~~ 554 (694)
T 3dm0_A 545 VWNLSNCKLR 554 (694)
T ss_dssp EEETTTCCEE
T ss_pred EEECCCCcEE
Confidence 9999876543
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-24 Score=167.74 Aligned_cols=153 Identities=14% Similarity=0.188 Sum_probs=128.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe----EEEeecCCcccEEEEEEeeCC-CEEEE--ecCCCeEEEEEcCCccccc
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT----VQTRSEFSEEELTSVVLMKNG-RKVVC--GSQSGTVLLYSWGYFKDCS 73 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~----~~~~~~~~~~~i~~l~~~~~~-~~l~~--~~~d~~i~v~d~~~~~~~~ 73 (203)
+.|+|+++++++++.|+.+++|+..+++ .+.....|...|.+++|+|.+ ..+++ |+.|+.|++||+.+ +.+.
T Consensus 236 ~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t-~~~~ 314 (420)
T 4gga_A 236 LRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS-GACL 314 (420)
T ss_dssp EEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT-TEEE
T ss_pred eeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc-cccc
Confidence 3588999999999999999999998753 345667788999999999965 45554 45799999999975 5666
Q ss_pred eeeecCCCCceeEE-EeeCCCEEEEEc--CCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEE
Q 028802 74 DRFVGLSPNSVDAL-LKLDEDRVITGS--ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~~~~~l~~~~--~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw 150 (203)
..+.. + ..+.++ |+|++..+++++ .|+.|++||+.+++++..+.+|.. .|.+++|+|+|++|++++.|++|+||
T Consensus 315 ~~~~~-~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~-~V~~l~~spdg~~l~S~s~D~tvriW 391 (420)
T 4gga_A 315 SAVDA-H-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS-RVLSLTMSPDGATVASAAADETLRLW 391 (420)
T ss_dssp EEEEC-S-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred eeecc-c-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 66665 4 455556 999999988765 689999999999999999999965 89999999999999999999999999
Q ss_pred eCCCccc
Q 028802 151 DLDDILK 157 (203)
Q Consensus 151 d~~~~~~ 157 (203)
|+....+
T Consensus 392 dv~~~~~ 398 (420)
T 4gga_A 392 RCFELDP 398 (420)
T ss_dssp CCSCSSC
T ss_pred ECCCCCc
Confidence 9976543
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-24 Score=168.05 Aligned_cols=153 Identities=16% Similarity=0.215 Sum_probs=131.7
Q ss_pred CcccccCC-EEEEEcCCCeEEEEEcCCCeE-------EEeecCCcccEEEEEEee-CCCEEEEecCCCeEEEEEcCCcc-
Q 028802 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNTV-------QTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFK- 70 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~i~v~d~~~~~~-------~~~~~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d~~~~~- 70 (203)
|+|+|++. +|++|+.||.|++|++..+.. ...+..|...|.+++|+| ++.+|++++.++.|++||++...
T Consensus 187 l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~ 266 (430)
T 2xyi_A 187 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT 266 (430)
T ss_dssp EEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS
T ss_pred EEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC
Confidence 57999988 999999999999999987321 345668899999999999 67899999999999999998642
Q ss_pred -ccceeeecCCCCceeEE-EeeCCC-EEEEEcCCCcEEEEEccC-CceeeeeccCCCcceEEEEEeCCCC-eEEEEeCCC
Q 028802 71 -DCSDRFVGLSPNSVDAL-LKLDED-RVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRK-FLGSISHDS 145 (203)
Q Consensus 71 -~~~~~~~~~~~~~v~~~-~~~~~~-~l~~~~~dg~v~v~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~ 145 (203)
..+..+.. |...+.++ |+|++. ++++++.+|.|++||++. +.++..+..|.. .|.+++|+|++. +|++++.|+
T Consensus 267 ~~~~~~~~~-~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~-~v~~i~~sp~~~~~l~s~~~d~ 344 (430)
T 2xyi_A 267 SKPSHTVDA-HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKD-EIFQVQWSPHNETILASSGTDR 344 (430)
T ss_dssp SSCSEEEEC-CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSS-CEEEEEECSSCTTEEEEEETTS
T ss_pred CcceeEeec-CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCC-CEEEEEECCCCCCEEEEEeCCC
Confidence 45666777 89999999 999887 688999999999999997 567788888855 899999999985 588999999
Q ss_pred cEEEEeCCCc
Q 028802 146 MLKLWDLDDI 155 (203)
Q Consensus 146 ~i~iwd~~~~ 155 (203)
.|++||+...
T Consensus 345 ~i~iwd~~~~ 354 (430)
T 2xyi_A 345 RLHVWDLSKI 354 (430)
T ss_dssp CCEEEEGGGT
T ss_pred cEEEEeCCCC
Confidence 9999999873
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.4e-25 Score=171.58 Aligned_cols=156 Identities=10% Similarity=0.140 Sum_probs=126.0
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCC---Ce---EEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCC--ccc
Q 028802 1 MTFAA-DAMKLLGTSGDGTLSVCNLRK---NT---VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY--FKD 71 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~v~d~~~---~~---~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~--~~~ 71 (203)
|+|+| ++++|++|+.||+|++||+.+ +. ....+ .|...|.+++|+|++.+|++++.|+.|++||+.. .+.
T Consensus 69 ~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~ 147 (437)
T 3gre_A 69 SAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQES 147 (437)
T ss_dssp EEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETT
T ss_pred EEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCc
Confidence 57999 999999999999999999876 43 12222 4789999999999999999999999999999941 223
Q ss_pred cceeeec---------C--CCCceeEE---EeeCCCEEEEEcCCCcEEEEEccCCceeeeecc--CCCcceEEEEEeCCC
Q 028802 72 CSDRFVG---------L--SPNSVDAL---LKLDEDRVITGSENGLISLVGILPNRIIQPIAE--HSEYPIESLALSHDR 135 (203)
Q Consensus 72 ~~~~~~~---------~--~~~~v~~~---~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~ 135 (203)
....+.. . +...+.++ +++++.++++++.++.|++||+++++++..+.. |.. .|++++|+|++
T Consensus 148 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~-~v~~~~~s~~~ 226 (437)
T 3gre_A 148 EVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHG-AVSSICIDEEC 226 (437)
T ss_dssp EEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGC-CEEEEEECTTS
T ss_pred eeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCC-ceEEEEECCCC
Confidence 3222221 0 12334444 357899999999999999999999999999887 644 89999999999
Q ss_pred CeEEEEeCCCcEEEEeCCCcccC
Q 028802 136 KFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 136 ~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
++|++++.|+.|++||++++...
T Consensus 227 ~~l~s~~~dg~i~iwd~~~~~~~ 249 (437)
T 3gre_A 227 CVLILGTTRGIIDIWDIRFNVLI 249 (437)
T ss_dssp CEEEEEETTSCEEEEETTTTEEE
T ss_pred CEEEEEcCCCeEEEEEcCCccEE
Confidence 99999999999999999886653
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-24 Score=183.87 Aligned_cols=152 Identities=16% Similarity=0.137 Sum_probs=131.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccc-------
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS------- 73 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~------- 73 (203)
|+|+| +++|++++.|++|++||+.+++.+..+. |...|++++|+|++++|++|+.||.|++||+... ...
T Consensus 64 l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~-~~~~~~i~~~ 140 (902)
T 2oaj_A 64 MRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRD-QLSSFKLDNL 140 (902)
T ss_dssp EEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTT-EEEEEEECCH
T ss_pred EEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCC-ccccceeccc
Confidence 57999 8899999999999999999998887776 5678999999999999999999999999999753 221
Q ss_pred ----eeeecCCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCCceeeeeccC-----------------CCcceEEEE
Q 028802 74 ----DRFVGLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQPIAEH-----------------SEYPIESLA 130 (203)
Q Consensus 74 ----~~~~~~~~~~v~~~-~~~~-~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~-----------------~~~~i~~~~ 130 (203)
..+.+ |...|.++ |+|+ +..+++++.++.| +||+++++++..+..| ....|.+++
T Consensus 141 ~~~~~~~~~-h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~ 218 (902)
T 2oaj_A 141 QKSSFFPAA-RLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSL 218 (902)
T ss_dssp HHHHTCSSS-CCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEE
T ss_pred ccccccccc-CCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEE
Confidence 23456 78899999 9996 5789999999999 9999999888777655 013699999
Q ss_pred EeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028802 131 LSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 131 ~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
|+|+|++|++++.|+.|++||++++.+
T Consensus 219 fspdg~~lasgs~Dg~i~lWd~~~g~~ 245 (902)
T 2oaj_A 219 YHPNSLHIITIHEDNSLVFWDANSGHM 245 (902)
T ss_dssp ECTTSSEEEEEETTCCEEEEETTTCCE
T ss_pred EcCCCCEEEEEECCCeEEEEECCCCcE
Confidence 999999999999999999999988654
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=172.38 Aligned_cols=147 Identities=14% Similarity=0.101 Sum_probs=121.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcc-----cEEEEEEeeCCCEEEEecCCCeEEEEEcCCccc----
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE-----ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD---- 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-----~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~---- 71 (203)
++|||+|++||+++.||+|++|+..+ ++..+. |.. .+.+++|+|+|++|++|+.||+|++||+.....
T Consensus 91 vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~ 167 (588)
T 2j04_A 91 CKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPE 167 (588)
T ss_dssp EEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCC
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcccccc
Confidence 58999999999999999999999544 666666 554 499999999999999999999999999975321
Q ss_pred --cceee----ecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCce---eeee-ccCCCcceEEEEEeCCCCeEEE
Q 028802 72 --CSDRF----VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI---IQPI-AEHSEYPIESLALSHDRKFLGS 140 (203)
Q Consensus 72 --~~~~~----~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~---~~~~-~~~~~~~i~~~~~~~~~~~l~~ 140 (203)
.+..+ .+ |...|.++ |+|+| +++++.|+.|++|++..+.. ..++ .+|. ..|.+++|+ |++||+
T Consensus 168 ~i~l~ti~~~~~g-h~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~-~~V~svaFs--g~~LAS 241 (588)
T 2j04_A 168 FYFESSIRLSDAG-SKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASR-RKITDLKIV--DYKVVL 241 (588)
T ss_dssp CEEEEEEECSCTT-CCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCS-SCCCCEEEE--TTEEEE
T ss_pred ceeeeeeeccccc-ccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeeccccc-CcEEEEEEE--CCEEEE
Confidence 24555 45 66799999 99999 88889999999999987763 2455 3563 479999999 689998
Q ss_pred EeCCCcEEEEeCCCccc
Q 028802 141 ISHDSMLKLWDLDDILK 157 (203)
Q Consensus 141 ~~~d~~i~iwd~~~~~~ 157 (203)
++ ++.|++||+.+...
T Consensus 242 a~-~~tIkLWd~~~~~~ 257 (588)
T 2j04_A 242 TC-PGYVHKIDLKNYSI 257 (588)
T ss_dssp EC-SSEEEEEETTTTEE
T ss_pred Ee-CCeEEEEECCCCeE
Confidence 87 69999999988766
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-24 Score=167.40 Aligned_cols=154 Identities=10% Similarity=0.215 Sum_probs=133.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC----CeEEEeecCCcccEEEEEEeeC-CCEEEEecCCCeEEEEEcCCcc-----
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRK----NTVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFK----- 70 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~----~~~~~~~~~~~~~i~~l~~~~~-~~~l~~~~~d~~i~v~d~~~~~----- 70 (203)
++|+|++++|++++.|+.|++|++.+ ...+..+..|...|.+++|+|+ +.+|++++.|+.|++||+....
T Consensus 73 ~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 152 (416)
T 2pm9_A 73 LDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN 152 (416)
T ss_dssp EEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTT
T ss_pred EEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccc
Confidence 47999999999999999999999987 3577888899999999999998 8999999999999999997543
Q ss_pred -cc--ceeeecCCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCCceeeeeccCC-----CcceEEEEEeCCC-CeEE
Q 028802 71 -DC--SDRFVGLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQPIAEHS-----EYPIESLALSHDR-KFLG 139 (203)
Q Consensus 71 -~~--~~~~~~~~~~~v~~~-~~~~-~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~-----~~~i~~~~~~~~~-~~l~ 139 (203)
.. ...+.. |...+.++ |+|+ +.++++++.++.|++||+++++.+..+..+. ...|.+++|+|++ .+|+
T Consensus 153 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 231 (416)
T 2pm9_A 153 YTPLTPGQSMS-SVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA 231 (416)
T ss_dssp CCCBCCCCSCC-SSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEE
T ss_pred ccccccccccC-CCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEE
Confidence 11 122356 78889999 9998 7899999999999999999999888887762 3379999999997 6889
Q ss_pred EEeCCC---cEEEEeCCCc
Q 028802 140 SISHDS---MLKLWDLDDI 155 (203)
Q Consensus 140 ~~~~d~---~i~iwd~~~~ 155 (203)
+++.|+ .|++||+++.
T Consensus 232 ~~~~d~~~~~i~~~d~~~~ 250 (416)
T 2pm9_A 232 TATGSDNDPSILIWDLRNA 250 (416)
T ss_dssp EEECCSSSCCCCEEETTST
T ss_pred EEECCCCCceEEEEeCCCC
Confidence 999998 9999999886
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-24 Score=163.44 Aligned_cols=153 Identities=16% Similarity=0.220 Sum_probs=127.4
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCe-EEEeecCCcc----cEEEEE----EeeCCCEEEEecCCCeEEEEEcCCcccc
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNT-VQTRSEFSEE----ELTSVV----LMKNGRKVVCGSQSGTVLLYSWGYFKDC 72 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~----~i~~l~----~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 72 (203)
+|+|++++|++++.|+.|++||+.++. .+..+..+.. .+.+++ |+|++.+|++++.++.|++||+... ..
T Consensus 124 ~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~ 202 (357)
T 3i2n_A 124 GIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM-AL 202 (357)
T ss_dssp GCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT-EE
T ss_pred ccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC-ce
Confidence 689999999999999999999999875 5666655443 788888 6789999999999999999999753 33
Q ss_pred ceeeecCCCCceeEE-Eee---CCCEEEEEcCCCcEEEEEccCCceeeeec-----cCCCcceEEEEEeCCCC-eEEEEe
Q 028802 73 SDRFVGLSPNSVDAL-LKL---DEDRVITGSENGLISLVGILPNRIIQPIA-----EHSEYPIESLALSHDRK-FLGSIS 142 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~---~~~~l~~~~~dg~v~v~d~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~-~l~~~~ 142 (203)
..... +...+.++ |+| ++.++++++.+|.|++||+++++.+..+. .|.. .|++++|+|+++ +|++++
T Consensus 203 -~~~~~-~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~ 279 (357)
T 3i2n_A 203 -RWETN-IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKS-TVWQVRHLPQNRELFLTAG 279 (357)
T ss_dssp -EEEEE-CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSS-CEEEEEEETTEEEEEEEEE
T ss_pred -eeecC-CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcC-CEEEEEECCCCCcEEEEEe
Confidence 33455 78899999 999 99999999999999999998876555444 7754 899999999998 899999
Q ss_pred CCCcEEEEeCCCcccC
Q 028802 143 HDSMLKLWDLDDILKG 158 (203)
Q Consensus 143 ~d~~i~iwd~~~~~~~ 158 (203)
.|+.|++||+++....
T Consensus 280 ~dg~i~iwd~~~~~~~ 295 (357)
T 3i2n_A 280 GAGGLHLWKYEYPIQR 295 (357)
T ss_dssp TTSEEEEEEEECCSCC
T ss_pred CCCcEEEeecCCCccc
Confidence 9999999999876543
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-24 Score=168.62 Aligned_cols=154 Identities=10% Similarity=0.189 Sum_probs=132.5
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC--CcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee-cC
Q 028802 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF--SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV-GL 79 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~ 79 (203)
++|++++|++++.|+.|++||+.+++.+..+.. |...|.+++|+|++.+|++++.|+.|++||++. +..+..+. .
T Consensus 178 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~- 255 (437)
T 3gre_A 178 VNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF-NVLIRSWSFG- 255 (437)
T ss_dssp ECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT-TEEEEEEBCT-
T ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC-ccEEEEEecC-
Confidence 557899999999999999999999999888887 789999999999999999999999999999985 56666664 5
Q ss_pred CCCceeEE-Eee----CCCEEEEEcCCCcEEEEEccCCceeeeeccCC-------------------------CcceEEE
Q 028802 80 SPNSVDAL-LKL----DEDRVITGSENGLISLVGILPNRIIQPIAEHS-------------------------EYPIESL 129 (203)
Q Consensus 80 ~~~~v~~~-~~~----~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~-------------------------~~~i~~~ 129 (203)
+...+.++ ++| ++.+|++++.||.|++||+++++++..+..|. ...|.++
T Consensus 256 ~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l 335 (437)
T 3gre_A 256 DHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTI 335 (437)
T ss_dssp TCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCE
T ss_pred CCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEE
Confidence 67788888 654 67799999999999999999998877776441 2258889
Q ss_pred EEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028802 130 ALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 130 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
+|+ ++++|++++.|+.|++||+.++....
T Consensus 336 ~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~ 364 (437)
T 3gre_A 336 SVS-NDKILLTDEATSSIVMFSLNELSSSK 364 (437)
T ss_dssp EEE-TTEEEEEEGGGTEEEEEETTCGGGCE
T ss_pred EEC-CceEEEecCCCCeEEEEECCCcccce
Confidence 999 77899999999999999999887553
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.3e-24 Score=176.24 Aligned_cols=154 Identities=17% Similarity=0.236 Sum_probs=135.2
Q ss_pred Cccccc--CCEEEEEcCCCeEEEEEcCCCe--EEEeecCCcccEEEEEEeeC--CCEEEEecCCCeEEEEEcCCcc-ccc
Q 028802 1 MTFAAD--AMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFK-DCS 73 (203)
Q Consensus 1 l~~sp~--~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~i~~l~~~~~--~~~l~~~~~d~~i~v~d~~~~~-~~~ 73 (203)
|+|+|+ +++|++|+.||.|++||+.++. .+..+..|...|.+++|+|+ +..+++++.||.|++||+.... ...
T Consensus 59 l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~ 138 (753)
T 3jro_A 59 VDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP 138 (753)
T ss_dssp EEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCC
T ss_pred EEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcce
Confidence 468887 9999999999999999999886 67778889999999999999 9999999999999999997542 234
Q ss_pred eeeecCCCCceeEE-Eee-------------CCCEEEEEcCCCcEEEEEccCC----ceeeeeccCCCcceEEEEEeCC-
Q 028802 74 DRFVGLSPNSVDAL-LKL-------------DEDRVITGSENGLISLVGILPN----RIIQPIAEHSEYPIESLALSHD- 134 (203)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~-------------~~~~l~~~~~dg~v~v~d~~~~----~~~~~~~~~~~~~i~~~~~~~~- 134 (203)
..+.. |...+.++ |+| ++.++++++.||.|++||++++ .....+.+|.. .|.+++|+|+
T Consensus 139 ~~~~~-~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~-~V~~l~~sp~~ 216 (753)
T 3jro_A 139 IIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTV 216 (753)
T ss_dssp EEEEC-CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCC
T ss_pred eEeec-CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCC-cEEEEEeccCC
Confidence 45667 88999999 998 5899999999999999999876 45567778855 8999999999
Q ss_pred --CCeEEEEeCCCcEEEEeCCCcc
Q 028802 135 --RKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 135 --~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+.+|++++.||.|++||++++.
T Consensus 217 ~~~~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 217 LLRSYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp SSSEEEEEEESSSCEEEEEESSSS
T ss_pred CCCCEEEEEecCCEEEEecCCCCC
Confidence 8999999999999999998863
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.1e-24 Score=165.07 Aligned_cols=151 Identities=17% Similarity=0.258 Sum_probs=137.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
++|+|++ .+++++.++.|++|++.++..+..+..|...|.+++|+|++.+|++++.++.|++||+.. ...+..+.. |
T Consensus 212 ~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~-~ 288 (425)
T 1r5m_A 212 VEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN-GNSQNCFYG-H 288 (425)
T ss_dssp CEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS-BSCSEEECC-C
T ss_pred EEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-CccceEecC-C
Confidence 4577764 588888999999999999888888889999999999999999999999999999999975 567777888 8
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
...+.++ |+|++ ++++++.++.|++||+.+++.+..+..|.. .|.+++|+|++++|++++.|+.|++||+.+..
T Consensus 289 ~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 289 SQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV-PIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp SSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC-CEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred CccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc-cEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 8999999 99999 999999999999999999999999988855 89999999999999999999999999998765
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.92 E-value=9.6e-24 Score=170.40 Aligned_cols=157 Identities=15% Similarity=0.196 Sum_probs=130.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC----eEEEeecCCccc-EEEEEEee--CCCEEEEecCCCeEEEEEcCCc----
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKN----TVQTRSEFSEEE-LTSVVLMK--NGRKVVCGSQSGTVLLYSWGYF---- 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~----~~~~~~~~~~~~-i~~l~~~~--~~~~l~~~~~d~~i~v~d~~~~---- 69 (203)
++|+|++++|++++ ++.|++|++.++ +....+.+|... |.+++|+| ++++|++++.|+.|++||+...
T Consensus 24 ~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~ 102 (615)
T 1pgu_A 24 LSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESN 102 (615)
T ss_dssp CEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGT
T ss_pred EEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccc
Confidence 58999999999998 789999999988 888899999999 99999999 9999999999999999999521
Q ss_pred ---cccceeeec-------------------------------------------CCCCceeEE-EeeCCC-EEEEEcCC
Q 028802 70 ---KDCSDRFVG-------------------------------------------LSPNSVDAL-LKLDED-RVITGSEN 101 (203)
Q Consensus 70 ---~~~~~~~~~-------------------------------------------~~~~~v~~~-~~~~~~-~l~~~~~d 101 (203)
......+.. .|...+.++ |+|++. .+++++.+
T Consensus 103 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 182 (615)
T 1pgu_A 103 SVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 182 (615)
T ss_dssp EEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETT
T ss_pred cccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCC
Confidence 122333332 033445555 666665 67888889
Q ss_pred CcEEEEEccCCceeeeeccCCCc---ceEEEEEeCC-CCeEEEEeCCCcEEEEeCCCcccCC
Q 028802 102 GLISLVGILPNRIIQPIAEHSEY---PIESLALSHD-RKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 102 g~v~v~d~~~~~~~~~~~~~~~~---~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
+.|++||+.+++.+..+..| .. .|.+++|+|+ +++|++++.|+.|++||+.++....
T Consensus 183 ~~v~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 243 (615)
T 1pgu_A 183 GSVVFYQGPPFKFSASDRTH-HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK 243 (615)
T ss_dssp TEEEEEETTTBEEEEEECSS-SCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEE
T ss_pred CcEEEEeCCCcceeeeeccc-CCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeE
Confidence 99999999999999999888 44 6999999999 9999999999999999998876543
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-24 Score=178.41 Aligned_cols=154 Identities=16% Similarity=0.164 Sum_probs=134.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcC--CCeEEEeecCCcccEEEEEEeeC--CCEEEEecCCCeEEEEEcCCcc-cccee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLR--KNTVQTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFK-DCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~--~~~~~~~~~~~~~~i~~l~~~~~--~~~l~~~~~d~~i~v~d~~~~~-~~~~~ 75 (203)
++|+|++++|++|+.||.|++|++. ++..+..+.+|..+|.+++|+|+ +++|++++.||.|++||+.... .....
T Consensus 15 l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 94 (753)
T 3jro_A 15 AVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV 94 (753)
T ss_dssp ECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred EEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccccccc
Confidence 5799999999999999999999998 45677888999999999999988 9999999999999999997532 15566
Q ss_pred eecCCCCceeEE-EeeC--CCEEEEEcCCCcEEEEEccCCc--eeeeeccCCCcceEEEEEeC-------------CCCe
Q 028802 76 FVGLSPNSVDAL-LKLD--EDRVITGSENGLISLVGILPNR--IIQPIAEHSEYPIESLALSH-------------DRKF 137 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~--~~~l~~~~~dg~v~v~d~~~~~--~~~~~~~~~~~~i~~~~~~~-------------~~~~ 137 (203)
+.. |...|.++ |+|+ +..+++++.||.|++||++++. ....+..|.. .|.+++|+| ++.+
T Consensus 95 ~~~-h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~-~v~~l~~~p~~~~~~~~~~~~~d~~~ 172 (753)
T 3jro_A 95 HAV-HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI-GVNSASWAPATIEEDGEHNGTKESRK 172 (753)
T ss_dssp ECC-CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSS-CEEEEEECCCC---------CGGGCC
T ss_pred ccC-CCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCC-ceEEEEecCcccccccccccCCCCCE
Confidence 777 89999999 9999 9999999999999999998763 3345566744 899999999 5899
Q ss_pred EEEEeCCCcEEEEeCCCcc
Q 028802 138 LGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 138 l~~~~~d~~i~iwd~~~~~ 156 (203)
|++++.||.|++||+++..
T Consensus 173 l~sgs~dg~I~iwd~~~~~ 191 (753)
T 3jro_A 173 FVTGGADNLVKIWKYNSDA 191 (753)
T ss_dssp EEEEETTSCEEEEEEETTT
T ss_pred EEEEECCCeEEEEeccCCc
Confidence 9999999999999998763
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.8e-24 Score=166.01 Aligned_cols=149 Identities=10% Similarity=0.142 Sum_probs=130.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEE----eecCCcccEEEEEEeeC---CCEEEEecCCCeEEEEEcCCccccc
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT----RSEFSEEELTSVVLMKN---GRKVVCGSQSGTVLLYSWGYFKDCS 73 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~----~~~~~~~~i~~l~~~~~---~~~l~~~~~d~~i~v~d~~~~~~~~ 73 (203)
|+|+|++++|++++.++.|++|++.++.... .+.+|...|.+++|+|+ +.+|++++.|+.|++||+.. +..+
T Consensus 155 ~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~-~~~~ 233 (450)
T 2vdu_B 155 ISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ-CFIV 233 (450)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC-TTCE
T ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC-Ccee
Confidence 4799999999999999999999998775443 66788999999999999 99999999999999999975 3455
Q ss_pred ee-eecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccC------------------------CCcceE
Q 028802 74 DR-FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEH------------------------SEYPIE 127 (203)
Q Consensus 74 ~~-~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~------------------------~~~~i~ 127 (203)
.. +.+ |...+.++ |+ ++.+|++++.|+.|++||+.+++++..+..+ ....|.
T Consensus 234 ~~~~~~-h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 311 (450)
T 2vdu_B 234 DKWLFG-HKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS 311 (450)
T ss_dssp EEECCC-CSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred eeeecC-CCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence 54 557 88999999 99 9999999999999999999999888777532 123689
Q ss_pred EEEEeCCCCeEEEEe-CCCcEEEEeC
Q 028802 128 SLALSHDRKFLGSIS-HDSMLKLWDL 152 (203)
Q Consensus 128 ~~~~~~~~~~l~~~~-~d~~i~iwd~ 152 (203)
+++|+|++++|++++ .++.|++|++
T Consensus 312 ~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 312 KIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp EEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 999999999999998 8999999999
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-23 Score=159.90 Aligned_cols=152 Identities=13% Similarity=0.105 Sum_probs=123.9
Q ss_pred cccccCCEE-EEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCC-------------------------------
Q 028802 2 TFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG------------------------------- 49 (203)
Q Consensus 2 ~~sp~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~------------------------------- 49 (203)
++.++++.+ ++++.|++|++||+.+++.+..+. +...|.+++|+++.
T Consensus 65 ~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~ 143 (355)
T 3vu4_A 65 RMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVC 143 (355)
T ss_dssp EECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEE
T ss_pred EEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceE
Confidence 456667766 566778899999999998888776 45678888877642
Q ss_pred ----CEEEE--ecCCCeEEEEEcCCcc--------------c-cceeeecCCCCceeEE-EeeCCCEEEEEcCCCc-EEE
Q 028802 50 ----RKVVC--GSQSGTVLLYSWGYFK--------------D-CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGL-ISL 106 (203)
Q Consensus 50 ----~~l~~--~~~d~~i~v~d~~~~~--------------~-~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~-v~v 106 (203)
.++++ ++.+|.|++||+.... . .+..+.+ |...|.++ |+|++.+|++++.|+. |++
T Consensus 144 ~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~-h~~~v~~~~~s~~g~~l~s~s~d~~~v~i 222 (355)
T 3vu4_A 144 EFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKA-HTNPIKMVRLNRKSDMVATCSQDGTIIRV 222 (355)
T ss_dssp EEETTEEEEEESSCTTCEEEEECCC------------------CCEEECC-CSSCEEEEEECTTSSEEEEEETTCSEEEE
T ss_pred EEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEc-cCCceEEEEECCCCCEEEEEeCCCCEEEE
Confidence 23343 5678899999987432 0 1667888 99999999 9999999999999998 999
Q ss_pred EEccCCceeeeec-c-CCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 107 VGILPNRIIQPIA-E-HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 107 ~d~~~~~~~~~~~-~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
||+++++++..+. + |.. .|.+++|+|++++|++++.|+.|++||++...
T Consensus 223 wd~~~~~~~~~~~~g~h~~-~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 223 FKTEDGVLVREFRRGLDRA-DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp EETTTCCEEEEEECTTCCS-CEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred EECCCCcEEEEEEcCCCCC-cEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 9999999999998 4 644 89999999999999999999999999997653
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.92 E-value=3.4e-24 Score=164.74 Aligned_cols=155 Identities=13% Similarity=0.155 Sum_probs=131.5
Q ss_pred Cccccc----C---CEEEEEcCCCeEEEEEcCCCeE-----EEeecCC-----cccEEEEEEe----eCCCE-EEEecCC
Q 028802 1 MTFAAD----A---MKLLGTSGDGTLSVCNLRKNTV-----QTRSEFS-----EEELTSVVLM----KNGRK-VVCGSQS 58 (203)
Q Consensus 1 l~~sp~----~---~~l~~~~~d~~i~v~d~~~~~~-----~~~~~~~-----~~~i~~l~~~----~~~~~-l~~~~~d 58 (203)
|+|+|+ + ++|++++.|+.|++|++.++.. ...+..| ...|.+++|+ |++.+ |++++.+
T Consensus 68 ~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d 147 (397)
T 1sq9_A 68 VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK 147 (397)
T ss_dssp EEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT
T ss_pred EEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC
Confidence 468888 9 9999999999999999988765 7788888 5899999999 99999 9999999
Q ss_pred CeEEEEEcCCc-----cccce-----ee-------ecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeecc
Q 028802 59 GTVLLYSWGYF-----KDCSD-----RF-------VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120 (203)
Q Consensus 59 ~~i~v~d~~~~-----~~~~~-----~~-------~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~ 120 (203)
+.|++||+... ...+. .+ .. +...+.++ |+|++ ++++++.++.|++||+++++.+..+..
T Consensus 148 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~ 225 (397)
T 1sq9_A 148 GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMT-PSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFES 225 (397)
T ss_dssp SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSS-SCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEEC
T ss_pred CcEEEEeCCccccccccceeeccCcceeeeeeccccC-CCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEec
Confidence 99999999750 23333 44 34 67889999 99999 999999999999999999999988887
Q ss_pred ---C---CCcceEEEEEeCCCCeEEEEeCC---CcEEEEeCCCcccC
Q 028802 121 ---H---SEYPIESLALSHDRKFLGSISHD---SMLKLWDLDDILKG 158 (203)
Q Consensus 121 ---~---~~~~i~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~ 158 (203)
| .. .|.+++|+|++++|++++.| +.|++||++++...
T Consensus 226 ~~~h~~~~~-~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~ 271 (397)
T 1sq9_A 226 QHSMINNSN-SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERI 271 (397)
T ss_dssp CC---CCCC-CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred cccccccCC-ccceEEECCCCCEEEEEecCCCCceEEEEECCCCccc
Confidence 6 55 89999999999999999999 99999999877543
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-23 Score=157.13 Aligned_cols=156 Identities=19% Similarity=0.231 Sum_probs=137.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++++.|+.|++|+............+...+..+.+++++.+|++++.|+.+++||+.........+.. |
T Consensus 92 ~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~-~ 170 (340)
T 4aow_A 92 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDES-H 170 (340)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSS-C
T ss_pred EEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEecc-c
Confidence 479999999999999999999999998888888888888999999999999999999999999998754444445566 7
Q ss_pred CCceeEE-EeeC--CCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028802 81 PNSVDAL-LKLD--EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 81 ~~~v~~~-~~~~--~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
...+..+ |+++ ..++++++.|+.|++||+++++.+..+.+|.. +|.+++|+|++++|++++.|+.|++||+++..+
T Consensus 171 ~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~ 249 (340)
T 4aow_A 171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG-YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH 249 (340)
T ss_dssp SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTEE
T ss_pred cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCC-cEEEEEECCCCCEEEEEeCCCeEEEEEeccCce
Confidence 8888888 7654 46788999999999999999999999999965 899999999999999999999999999998765
Q ss_pred C
Q 028802 158 G 158 (203)
Q Consensus 158 ~ 158 (203)
.
T Consensus 250 ~ 250 (340)
T 4aow_A 250 L 250 (340)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.92 E-value=6e-24 Score=171.59 Aligned_cols=145 Identities=19% Similarity=0.250 Sum_probs=128.3
Q ss_pred CCEEEEEcC-CCeEEEEEcCCCeEE-EeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCce
Q 028802 7 AMKLLGTSG-DGTLSVCNLRKNTVQ-TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSV 84 (203)
Q Consensus 7 ~~~l~~~~~-d~~i~v~d~~~~~~~-~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v 84 (203)
+++|++++. ++.|++|++.++... ..+..|...|.+++|+|++++|++++.|+.|++||+.. +..+..+...|...+
T Consensus 456 ~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~h~~~v 534 (615)
T 1pgu_A 456 QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS-REVKTSRWAFRTSKI 534 (615)
T ss_dssp SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEECCSCCCSSCE
T ss_pred CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCC-CcceeEeecCCCCce
Confidence 778888988 999999999987665 67778999999999999999999999999999999975 455555543377889
Q ss_pred eEE-Eee----------CCCEEEEEcCCCcEEEEEccCC-ceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028802 85 DAL-LKL----------DEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 85 ~~~-~~~----------~~~~l~~~~~dg~v~v~d~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
.++ |+| ++.+|++++.||.|++|++.++ +.+..+.+|.. .|.+++|+|+++ |++++.|+.|++|++
T Consensus 535 ~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~-~v~~l~~s~~~~-l~s~~~d~~v~iw~~ 612 (615)
T 1pgu_A 535 NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD-GVNNLLWETPST-LVSSGADACIKRWNV 612 (615)
T ss_dssp EEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTT-CEEEEEEEETTE-EEEEETTSCEEEEEE
T ss_pred eEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCcc-ceEEEEEcCCCC-eEEecCCceEEEEee
Confidence 999 999 9999999999999999999987 78888999955 899999999999 999999999999998
Q ss_pred CC
Q 028802 153 DD 154 (203)
Q Consensus 153 ~~ 154 (203)
.+
T Consensus 613 ~~ 614 (615)
T 1pgu_A 613 VL 614 (615)
T ss_dssp C-
T ss_pred ec
Confidence 64
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.7e-24 Score=162.41 Aligned_cols=151 Identities=15% Similarity=0.152 Sum_probs=126.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEE--eeCCCEEEEecCCCeEEEEEcCCccccce----
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVL--MKNGRKVVCGSQSGTVLLYSWGYFKDCSD---- 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~--~~~~~~l~~~~~d~~i~v~d~~~~~~~~~---- 74 (203)
|+|+|++++|++++.|+.|++||+.+++.+. +..|...|.+++| +|++.+|++++.|+.|++||+... ..+.
T Consensus 92 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~ 169 (368)
T 3mmy_A 92 VCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS-NPMMVLQL 169 (368)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS-SCSEEEEC
T ss_pred EEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC-cEEEEEec
Confidence 4799999999999999999999999988765 5568899999999 889999999999999999998642 1111
Q ss_pred --------------------------------------------------------------------------------
Q 028802 75 -------------------------------------------------------------------------------- 74 (203)
Q Consensus 75 -------------------------------------------------------------------------------- 74 (203)
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~ 249 (368)
T 3mmy_A 170 PERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPN 249 (368)
T ss_dssp SSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSC
T ss_pred CCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCC
Confidence
Q ss_pred ------eeecCCCC------------ceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCC
Q 028802 75 ------RFVGLSPN------------SVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR 135 (203)
Q Consensus 75 ------~~~~~~~~------------~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 135 (203)
.+.. |.. .+.++ |+|++++|++++.||.|++||+.+++++..+..|.. +|.+++|+|++
T Consensus 250 ~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g 327 (368)
T 3mmy_A 250 PAKDNFTFKC-HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQ-PISACCFNHNG 327 (368)
T ss_dssp HHHHSEEEEC-SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS-CEEEEEECTTS
T ss_pred ccccceeeee-eecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCC-CceEEEECCCC
Confidence 1111 222 58888 999999999999999999999999999999998855 89999999999
Q ss_pred CeEEEEeCCCcEEEEeCCCc
Q 028802 136 KFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 136 ~~l~~~~~d~~i~iwd~~~~ 155 (203)
++|++++.|+..+.|++-..
T Consensus 328 ~~l~~~s~d~~~~~~~~~~~ 347 (368)
T 3mmy_A 328 NIFAYASSYDWSKGHEFYNP 347 (368)
T ss_dssp SCEEEEECCCSTTCGGGCCT
T ss_pred CeEEEEecccccccccccCC
Confidence 99999999887666665443
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.8e-23 Score=153.23 Aligned_cols=152 Identities=17% Similarity=0.248 Sum_probs=129.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeec--CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
|+||+++ +|++| .|++|+|||+.+++++..+. .|...|.+++|+|++++|++|+.|+.|++|++.+ ++.+..+.+
T Consensus 31 l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~-~~~~~~~~~ 107 (318)
T 4ggc_A 31 VDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ-QKRLRNMTS 107 (318)
T ss_dssp EEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEEEC
T ss_pred EEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCC-ceeEEEecC
Confidence 4799876 67766 48999999999998877664 6777899999999999999999999999999975 577778888
Q ss_pred CCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCC-ceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028802 79 LSPNSVDALLKLDEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 79 ~~~~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
|...+.++ ++++..+++++.++.+++|+.... ..+..+.+|.. .+..+.+++++++|++++.|+.|++||++++..
T Consensus 108 -h~~~~~~~-~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 184 (318)
T 4ggc_A 108 -HSARVGSL-SWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ-EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 184 (318)
T ss_dssp -CSSCEEEE-EEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS-CEEEEEECTTSSEEEEEETTSCEEEEESSCBTT
T ss_pred -ccceEEEe-ecCCCEEEEEecCCceEeeecCCCceeEEEEcCccC-ceEEEEEcCCCCEEEEEecCcceeEEECCCCcc
Confidence 87776654 667789999999999999998765 45567778855 899999999999999999999999999988754
Q ss_pred C
Q 028802 158 G 158 (203)
Q Consensus 158 ~ 158 (203)
.
T Consensus 185 ~ 185 (318)
T 4ggc_A 185 G 185 (318)
T ss_dssp B
T ss_pred c
Confidence 3
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-23 Score=161.55 Aligned_cols=152 Identities=16% Similarity=0.241 Sum_probs=129.0
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCCeEEEee-------------cCCcccEEEEEEee-CCCEEEEecCCCeEEEEE
Q 028802 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRS-------------EFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYS 65 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~v~d~~~~~~~~~~-------------~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~v~d 65 (203)
|+|+| ++++|++|+.||.|++|++.++.....+ .+|...|.+++|+| ++.+|++++.++.|++||
T Consensus 49 ~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 128 (408)
T 4a11_B 49 LDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWD 128 (408)
T ss_dssp EEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEE
T ss_pred EEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEee
Confidence 57999 9999999999999999999876443332 25889999999999 778999999999999999
Q ss_pred cCCccccceeeecCCCCceeEE-Eee---CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCe-EEE
Q 028802 66 WGYFKDCSDRFVGLSPNSVDAL-LKL---DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF-LGS 140 (203)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~v~~~-~~~---~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~ 140 (203)
+.. +.....+. +...+.++ ++| ++.++++++.++.|++||+++++.+..+..|.. .|.+++|+|++.+ |++
T Consensus 129 ~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~ll~~ 204 (408)
T 4a11_B 129 TNT-LQTADVFN--FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQ-EILAVSWSPRYDYILAT 204 (408)
T ss_dssp TTT-TEEEEEEE--CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCS-CEEEEEECSSCTTEEEE
T ss_pred CCC-Cccceecc--CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCC-cEEEEEECCCCCcEEEE
Confidence 975 45555554 56677777 766 556999999999999999999999999988855 8999999999985 889
Q ss_pred EeCCCcEEEEeCCCcc
Q 028802 141 ISHDSMLKLWDLDDIL 156 (203)
Q Consensus 141 ~~~d~~i~iwd~~~~~ 156 (203)
++.|+.|++||+++..
T Consensus 205 ~~~dg~i~i~d~~~~~ 220 (408)
T 4a11_B 205 ASADSRVKLWDVRRAS 220 (408)
T ss_dssp EETTSCEEEEETTCSS
T ss_pred EcCCCcEEEEECCCCC
Confidence 9999999999998764
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.92 E-value=6.9e-24 Score=163.77 Aligned_cols=154 Identities=9% Similarity=0.038 Sum_probs=120.4
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEE-----EeecCCcccEEEEEEee--------CCCEEEEecCCCeEEEEEcCCc
Q 028802 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQ-----TRSEFSEEELTSVVLMK--------NGRKVVCGSQSGTVLLYSWGYF 69 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~v~d~~~~~~~-----~~~~~~~~~i~~l~~~~--------~~~~l~~~~~d~~i~v~d~~~~ 69 (203)
+++++++|++++.|++|++||+.++... ..+.+|...|.+++|+| ++++|++++.|++|++||+...
T Consensus 97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~ 176 (393)
T 4gq1_A 97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE 176 (393)
T ss_dssp CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT
T ss_pred cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC
Confidence 4567788999999999999999887543 34678999999999998 7899999999999999999753
Q ss_pred cccceeeecCCCCceeEE-EeeCCC-EEEEEcCCCcEEEEEccCCceeeee-------------------------ccCC
Q 028802 70 KDCSDRFVGLSPNSVDAL-LKLDED-RVITGSENGLISLVGILPNRIIQPI-------------------------AEHS 122 (203)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~-~~~~~~-~l~~~~~dg~v~v~d~~~~~~~~~~-------------------------~~~~ 122 (203)
..+..+.. |...+.++ |+|++. +|++++.|+.|++||+++++..... .+|.
T Consensus 177 -~~~~~~~~-~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 254 (393)
T 4gq1_A 177 -GPILAGYP-LSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIA 254 (393)
T ss_dssp -EEEEEEEE-CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCS
T ss_pred -ceeeeecC-CCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccc
Confidence 45555666 88899999 999874 7999999999999999876543222 2332
Q ss_pred CcceEEEEEe-CCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028802 123 EYPIESLALS-HDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 123 ~~~i~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
. .+.++.|+ |+++.|++++.|+.+++||+.+.....
T Consensus 255 ~-~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~ 291 (393)
T 4gq1_A 255 S-SLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYN 291 (393)
T ss_dssp S-SCSEEEEETTTTCEEEEECTTSEEEEEEC-------
T ss_pred c-cceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCc
Confidence 3 67888887 799999999999999999998776543
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.5e-23 Score=161.36 Aligned_cols=151 Identities=13% Similarity=0.081 Sum_probs=133.6
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCC
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 81 (203)
++++++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+ +..+..+.. |.
T Consensus 275 ~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~-h~ 352 (464)
T 3v7d_B 275 TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN-GELMYTLQG-HT 352 (464)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-TEEEEEECC-CS
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CcEEEEEeC-CC
Confidence 3577899999999999999999999999999999999999999999999999999999999999975 577888888 99
Q ss_pred CceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028802 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
..+.++ ++ +.++++++.||.|++||+.++........ ...+..++|+|++++|++++ |+.|++||+.++....
T Consensus 353 ~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 353 ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHH--TNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVH 426 (464)
T ss_dssp SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEC--TTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEE
T ss_pred CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecC--CCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEe
Confidence 999988 65 68999999999999999998876655543 22677889999999999998 8999999999887553
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-23 Score=157.58 Aligned_cols=147 Identities=18% Similarity=0.171 Sum_probs=125.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe---EEEeecCCcccEEEEEEeeCCC-EEEEecCCCeEEEEEc-CCcccccee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT---VQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSW-GYFKDCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~i~~l~~~~~~~-~l~~~~~d~~i~v~d~-~~~~~~~~~ 75 (203)
++|+|++++|++++.|+.|++|++.++. ....+..|...|.+++|+|+++ +|++++.++.|++||+ ... .. ..
T Consensus 17 ~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-~~-~~ 94 (342)
T 1yfq_A 17 IKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP-SF-QA 94 (342)
T ss_dssp EEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS-SE-EE
T ss_pred EEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCC-ce-Ee
Confidence 5799999999999999999999998765 3445557889999999999999 9999999999999999 643 22 22
Q ss_pred eec-CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC---------CceeeeeccCCCcceEEEEEeCCCCeEEEEeCC
Q 028802 76 FVG-LSPNSVDAL-LKLDEDRVITGSENGLISLVGILP---------NRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 76 ~~~-~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~---------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 144 (203)
+.. .|...+.++ |+| +.++++++.|+.|++||+++ ++++..+. +.. .|.+++|+|++ +++++.+
T Consensus 95 ~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~-~v~~~~~~~~~--l~~~~~d 169 (342)
T 1yfq_A 95 LTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKN-KIFTMDTNSSR--LIVGMNN 169 (342)
T ss_dssp CBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCC-CEEEEEECSSE--EEEEEST
T ss_pred ccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCC-ceEEEEecCCc--EEEEeCC
Confidence 221 056789999 999 99999999999999999988 77777676 534 89999999987 8999999
Q ss_pred CcEEEEeCCC
Q 028802 145 SMLKLWDLDD 154 (203)
Q Consensus 145 ~~i~iwd~~~ 154 (203)
+.|++||+++
T Consensus 170 ~~i~i~d~~~ 179 (342)
T 1yfq_A 170 SQVQWFRLPL 179 (342)
T ss_dssp TEEEEEESSC
T ss_pred CeEEEEECCc
Confidence 9999999987
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-22 Score=151.11 Aligned_cols=149 Identities=17% Similarity=0.200 Sum_probs=130.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcc--ccceeeec
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--DCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~ 78 (203)
|+| |++++|++++.||.|++|++.++.....+..|...|.+++|+|++.+|++++.++.+++|++.... ..+..+..
T Consensus 24 ~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~ 102 (313)
T 3odt_A 24 VVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIG 102 (313)
T ss_dssp EEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECC
T ss_pred EEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhh
Confidence 467 899999999999999999999998888888999999999999999999999999999999986432 44666777
Q ss_pred CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeC-CCCeEEEEeCCCcEEEEeCCCcc
Q 028802 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
|...+.++ | ++.++++++.++.|++|| .+..+..+..|.. .+.++.|.| ++.+|++++.|+.|++||.....
T Consensus 103 -~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 176 (313)
T 3odt_A 103 -HQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNA-SVWDAKVVSFSENKFLTASADKTIKLWQNDKVI 176 (313)
T ss_dssp -CSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSS-CEEEEEEEETTTTEEEEEETTSCEEEEETTEEE
T ss_pred -cccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCC-ceeEEEEccCCCCEEEEEECCCCEEEEecCceE
Confidence 88999988 6 678999999999999999 6777888888855 899999988 89999999999999999955443
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-23 Score=157.79 Aligned_cols=153 Identities=18% Similarity=0.237 Sum_probs=128.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC---------CeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCC-cc
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRK---------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-FK 70 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~---------~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~-~~ 70 (203)
|+|+| +++|++++.|+.|++||+.+ ++++..+. |...|.+++|+|++ +++++.++.|++||+.. ..
T Consensus 107 l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~ 182 (342)
T 1yfq_A 107 ICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCED 182 (342)
T ss_dssp EEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTT
T ss_pred EEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCcccc
Confidence 46889 99999999999999999987 66666665 78899999999887 89999999999999975 33
Q ss_pred ccce-eeecCCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCC------ceeeeeccCCC--------cceEEEEEeC
Q 028802 71 DCSD-RFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPN------RIIQPIAEHSE--------YPIESLALSH 133 (203)
Q Consensus 71 ~~~~-~~~~~~~~~v~~~-~~~-~~~~l~~~~~dg~v~v~d~~~~------~~~~~~~~~~~--------~~i~~~~~~~ 133 (203)
.... .... +...+.++ |+| ++.++++++.+|.|++|++... +.+..+..|.. ..|.+++|+|
T Consensus 183 ~~~~~~~~~-~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 261 (342)
T 1yfq_A 183 DNGTIEESG-LKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP 261 (342)
T ss_dssp CCCEEEECS-CSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT
T ss_pred ccceeeecC-CCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcC
Confidence 3222 3344 67789999 999 9999999999999999999876 67777777632 2799999999
Q ss_pred CCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 134 DRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 134 ~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
++++|++++.||.|++||+.++...
T Consensus 262 ~~~~l~~~~~dg~i~vwd~~~~~~~ 286 (342)
T 1yfq_A 262 RHKFLYTAGSDGIISCWNLQTRKKI 286 (342)
T ss_dssp TTCCEEEEETTSCEEEEETTTTEEE
T ss_pred CCCEEEEecCCceEEEEcCccHhHh
Confidence 9999999999999999999887654
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=8.1e-23 Score=177.15 Aligned_cols=154 Identities=18% Similarity=0.275 Sum_probs=136.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEee--CCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+| ++.++++++.|+.|++||+.. +.....+.+
T Consensus 663 ~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~-~~~~~~~~~ 741 (1249)
T 3sfz_A 663 CAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ-KECRNTMFG 741 (1249)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTS-SSEEEEECC
T ss_pred EEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCC-cchhheecC
Confidence 47999999999999999999999999999999999999999999999 556899999999999999975 567778888
Q ss_pred CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeec--------------------------------------
Q 028802 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA-------------------------------------- 119 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~-------------------------------------- 119 (203)
|...+.++ |+|++.++++++.||.|++||+.++.....+.
T Consensus 742 -h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~ 820 (1249)
T 3sfz_A 742 -HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK 820 (1249)
T ss_dssp -CSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTE
T ss_pred -CCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCc
Confidence 99999999 99999999999999999999998765443321
Q ss_pred -----------------cCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028802 120 -----------------EHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 120 -----------------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
+|. ..|.+++|+|+++++++++.++.|++|++.++..
T Consensus 821 v~~~d~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~ 874 (1249)
T 3sfz_A 821 VLLFDIHTSGLLAEIHTGHH-STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLK 874 (1249)
T ss_dssp EEEEETTTCCEEEEEECSSS-SCCCEEEECSSTTEEEEECSSSCEEEEETTTTEE
T ss_pred EEEEEecCCCceeEEcCCCC-CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce
Confidence 342 3788999999999999999999999999987654
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-22 Score=157.35 Aligned_cols=154 Identities=13% Similarity=0.201 Sum_probs=133.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
|+|+|+|++|++|+.|++|++||+.+++.+..+.+|...+.++.+ ++..|++++.++.+++||.......+..+.+ |
T Consensus 153 v~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~-h 229 (420)
T 4gga_A 153 VAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSG-H 229 (420)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEEC-C
T ss_pred EEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecc-c
Confidence 579999999999999999999999999999999999999988876 5689999999999999999876667778888 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc----eeeeeccCCCcceEEEEEeCCCC-eEEEE--eCCCcEEEEeC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNR----IIQPIAEHSEYPIESLALSHDRK-FLGSI--SHDSMLKLWDL 152 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~----~~~~~~~~~~~~i~~~~~~~~~~-~l~~~--~~d~~i~iwd~ 152 (203)
...+..+ ++|++.++++++.|+.|++|+..+++ .+.....|.. .|.+++|+|.+. .++++ +.|++|++||+
T Consensus 230 ~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~-~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~ 308 (420)
T 4gga_A 230 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG-AVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 308 (420)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSS-CEEEEEECTTCTTEEEEEECTTTCEEEEEET
T ss_pred ccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCC-ceeeeeeCCCcccEEEEEeecCCCEEEEEeC
Confidence 9999999 89999999999999999999998764 3445566644 899999999765 44543 47999999999
Q ss_pred CCcccC
Q 028802 153 DDILKG 158 (203)
Q Consensus 153 ~~~~~~ 158 (203)
.++...
T Consensus 309 ~t~~~~ 314 (420)
T 4gga_A 309 CSGACL 314 (420)
T ss_dssp TTTEEE
T ss_pred Cccccc
Confidence 987644
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-22 Score=156.97 Aligned_cols=148 Identities=18% Similarity=0.258 Sum_probs=129.0
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCC
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 81 (203)
++++++++|++|+.||+|++||+.+++.+..+.+|...|.+++|+ +.+|++++.|+.|++||+.+ +..+..+.+ |.
T Consensus 124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~-h~ 199 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAET-GECIHTLYG-HT 199 (445)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT-TEEEEEECC-CS
T ss_pred EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCc-CcEEEEECC-CC
Confidence 366789999999999999999999999999999999999999997 67999999999999999975 567777888 88
Q ss_pred CceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
..+.++ + ++..+++++.||.|++||+.+++.+..+..|.. .|.++.| ++.+|++++.|+.|++||++++...
T Consensus 200 ~~v~~~~~--~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~ 272 (445)
T 2ovr_B 200 STVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVA-AVRCVQY--DGRRVVSGAYDFMVKVWDPETETCL 272 (445)
T ss_dssp SCEEEEEE--ETTEEEEEETTSEEEEEESSSCCEEEEEECCSS-CEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEE
T ss_pred CcEEEEEe--cCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcc-cEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEe
Confidence 889888 6 467899999999999999999998888888855 7888888 7788999999999999998876543
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.3e-22 Score=156.04 Aligned_cols=148 Identities=16% Similarity=0.227 Sum_probs=130.3
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCC
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 81 (203)
++++++++|++|+.||.|++||+.+++....+.+|...|.+++| ++.+|++|+.||.|++||+.+ +..+..+.. |.
T Consensus 138 ~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~-h~ 213 (435)
T 1p22_A 138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT-GEMLNTLIH-HC 213 (435)
T ss_dssp EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS-CCEEEEECC-CC
T ss_pred EEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC-CcEEEEEcC-CC
Confidence 45678999999999999999999999999999999999999998 788999999999999999975 577788888 99
Q ss_pred CceeEE-EeeCCCEEEEEcCCCcEEEEEccCCcee---eeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028802 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRII---QPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
..+.++ |+ +..+++++.||.|++||+.++... ..+.+|.. .|.+++| ++++|++++.|+.|++||++++..
T Consensus 214 ~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~ 288 (435)
T 1p22_A 214 EAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA-AVNVVDF--DDKYIVSASGDRTIKVWNTSTCEF 288 (435)
T ss_dssp SCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSS-CEEEEEE--ETTEEEEEETTSEEEEEETTTCCE
T ss_pred CcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCC-cEEEEEe--CCCEEEEEeCCCeEEEEECCcCcE
Confidence 999999 65 569999999999999999887655 56677754 8999988 788999999999999999988754
Q ss_pred C
Q 028802 158 G 158 (203)
Q Consensus 158 ~ 158 (203)
.
T Consensus 289 ~ 289 (435)
T 1p22_A 289 V 289 (435)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=9.7e-23 Score=161.28 Aligned_cols=145 Identities=16% Similarity=0.187 Sum_probs=120.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe-------EEEee----cCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCc
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT-------VQTRS----EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~-------~~~~~----~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~ 69 (203)
++|||+|++||+|+.||+|++|++.++. .+.++ .+|...|.+++|+|+| +++++.|+.+++|++...
T Consensus 135 vafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~ 212 (588)
T 2j04_A 135 FEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSAS 212 (588)
T ss_dssp EEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSS
T ss_pred EEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCC
Confidence 5899999999999999999999999874 35665 6677899999999999 788888999999999753
Q ss_pred cc--cceeee-cCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEE--eCCCCeEEEEeC
Q 028802 70 KD--CSDRFV-GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLAL--SHDRKFLGSISH 143 (203)
Q Consensus 70 ~~--~~~~~~-~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~ 143 (203)
.. ....+. . |...|.++ |+ +..+++++ ++.|++||+..++......+|.. .|..++| +|++..|++++.
T Consensus 213 ~~~~~~~tL~~~-h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~-~V~~va~~~s~d~~~La~a~e 287 (588)
T 2j04_A 213 SHQPVSRMIQNA-SRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLE-NFHIIPLNHEKESTILLMSNK 287 (588)
T ss_dssp SSCCCEEEEECC-CSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCS-CCCEEEETTCSSCEEEEECSS
T ss_pred ccccceeeeccc-ccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCc-eEEEEEeeeCCCCCEEEEEcC
Confidence 31 223453 6 77889999 88 68888887 69999999998777443437754 8999999 999999999999
Q ss_pred CCcEEEEeCC
Q 028802 144 DSMLKLWDLD 153 (203)
Q Consensus 144 d~~i~iwd~~ 153 (203)
+|+ ++|...
T Consensus 288 dG~-klw~~d 296 (588)
T 2j04_A 288 TSY-KVLLED 296 (588)
T ss_dssp CEE-EEEESS
T ss_pred CCC-EEEeec
Confidence 999 999986
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4e-23 Score=159.53 Aligned_cols=151 Identities=12% Similarity=0.156 Sum_probs=106.0
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCC-CEEEEecCCCeEEEEEcCCccccce----------
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSD---------- 74 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~---------- 74 (203)
++++||+|+.|++|+|||+.++..+..+..|..++.+++|+|++ .+|++++.|+.|++||+........
T Consensus 155 d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~ 234 (393)
T 4gq1_A 155 AEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNP 234 (393)
T ss_dssp EEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCC
T ss_pred CCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccc
Confidence 88999999999999999999888877888889999999999987 5799999999999999975321111
Q ss_pred --------------eeecCCCCceeEE-E-eeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEE----------
Q 028802 75 --------------RFVGLSPNSVDAL-L-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIES---------- 128 (203)
Q Consensus 75 --------------~~~~~~~~~v~~~-~-~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~---------- 128 (203)
...+ +...+.++ | .|++..|++++.|+.+++||+..++....+..+.. .+..
T Consensus 235 ~~~s~~~~~~~~~~~~~~-~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~ 312 (393)
T 4gq1_A 235 WLLTLNTLPLVNTCHSSG-IASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTM-KLGPKNLLPNVQGI 312 (393)
T ss_dssp CSEEEESGGGC------C-CSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEE
T ss_pred eEEecccccceeeeeccc-ccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecC-ccccEEEccccccc
Confidence 0123 55667788 6 48999999999999999999987766555544422 2222
Q ss_pred --------EEEeC--CCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 129 --------LALSH--DRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 129 --------~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
..|+| ++.++++++.|+.|++||+.++.+.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~ 352 (393)
T 4gq1_A 313 SLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSN 352 (393)
T ss_dssp CSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCC
T ss_pred cccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEE
Confidence 23333 3345677889999999999877543
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.4e-22 Score=153.17 Aligned_cols=149 Identities=13% Similarity=0.108 Sum_probs=118.7
Q ss_pred CEEEE--EcCCCeEEEEEcCCCe----------------EEEeecCCcccEEEEEEeeCCCEEEEecCCCe-EEEEEcCC
Q 028802 8 MKLLG--TSGDGTLSVCNLRKNT----------------VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT-VLLYSWGY 68 (203)
Q Consensus 8 ~~l~~--~~~d~~i~v~d~~~~~----------------~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~-i~v~d~~~ 68 (203)
.++++ |+.+|.|++||+.++. .+..+.+|...|.+++|+|++.+|++++.|++ |++||+.+
T Consensus 148 ~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~ 227 (355)
T 3vu4_A 148 GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTED 227 (355)
T ss_dssp TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTT
T ss_pred cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 45555 5889999999998764 16778899999999999999999999999998 99999985
Q ss_pred ccccceeee-cCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCcee--eee--------------------ccCCCc
Q 028802 69 FKDCSDRFV-GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRII--QPI--------------------AEHSEY 124 (203)
Q Consensus 69 ~~~~~~~~~-~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~--~~~--------------------~~~~~~ 124 (203)
+..+..+. +.|...|.++ |+|++++|++++.|+.|++||+..+... ..+ ......
T Consensus 228 -~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (355)
T 3vu4_A 228 -GVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHV 306 (355)
T ss_dssp -CCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTC
T ss_pred -CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCC
Confidence 56677776 2267889999 9999999999999999999999754311 111 111011
Q ss_pred ceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028802 125 PIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 125 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
....++|++++++|++++.||.+++|++.....
T Consensus 307 ~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~ 339 (355)
T 3vu4_A 307 RGCKIAWISESSLVVVWPHTRMIETFKVVFDDE 339 (355)
T ss_dssp CCCEEEESSSSEEEEEETTTTEEEEEEEEEETT
T ss_pred CceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCC
Confidence 246789999999999999999999999876543
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-22 Score=157.40 Aligned_cols=145 Identities=23% Similarity=0.356 Sum_probs=125.0
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCce
Q 028802 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSV 84 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v 84 (203)
.++++|++|+.|+.|++||+.+++.+..+..|...|.++.| ++.+|++++.|+.|++||+.+ +..+..+.+ |...+
T Consensus 264 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~-h~~~v 339 (435)
T 1p22_A 264 FDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIEC-GACLRVLEG-HEELV 339 (435)
T ss_dssp EETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTT-CCEEEEECC-CSSCE
T ss_pred eCCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCC-CCEEEEEeC-CcCcE
Confidence 47889999999999999999999999999999999999988 478999999999999999985 577888888 99999
Q ss_pred eEE-EeeCCCEEEEEcCCCcEEEEEccCCc---------eeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 85 DAL-LKLDEDRVITGSENGLISLVGILPNR---------IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 85 ~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
.++ + ++.++++|+.||.|++||+.++. ++..+..|.. .|.+++| ++.+|++++.||.|++||+.+
T Consensus 340 ~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 340 RCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG-RVFRLQF--DEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp EEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS-CCCCEEE--CSSCEEECCSSSEEEEEC---
T ss_pred EEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCC-CeEEEEe--CCCEEEEEeCCCEEEEEECCC
Confidence 998 6 78999999999999999998765 7788888855 8999999 788999999999999999987
Q ss_pred cccC
Q 028802 155 ILKG 158 (203)
Q Consensus 155 ~~~~ 158 (203)
....
T Consensus 415 ~~~~ 418 (435)
T 1p22_A 415 DPAA 418 (435)
T ss_dssp ----
T ss_pred CCCc
Confidence 6544
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=3e-21 Score=150.97 Aligned_cols=144 Identities=19% Similarity=0.270 Sum_probs=128.9
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCcee
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~ 85 (203)
++++|++|+.||+|++||+.+++.+..+.+|...|.++.|+ +..+++++.|+.|++||+.. +..+..+.. |...+.
T Consensus 168 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~-~~~~~~~~~-~~~~v~ 243 (445)
T 2ovr_B 168 RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIET-GQCLHVLMG-HVAAVR 243 (445)
T ss_dssp ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSS-CCEEEEEEC-CSSCEE
T ss_pred cCCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCC-CcEEEEEcC-CcccEE
Confidence 36789999999999999999999999999999999999985 67899999999999999975 567778888 899999
Q ss_pred EE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 86 AL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 86 ~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
++ + ++.++++++.+|.|++||+++++++..+..|.. .|.++.| ++.++++++.|+.|++||++++...
T Consensus 244 ~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~ 312 (445)
T 2ovr_B 244 CVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN-RVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCI 312 (445)
T ss_dssp EEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSS-CEEEEEE--CSSEEEEEETTSCEEEEETTTCCEE
T ss_pred EEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCC-ceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEE
Confidence 88 6 788999999999999999999999999988855 8999988 8889999999999999999887643
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.88 E-value=8e-22 Score=154.13 Aligned_cols=153 Identities=9% Similarity=-0.012 Sum_probs=122.3
Q ss_pred CcccccCCEEE----EEcCCCeEEEEEcCCC--------e---EEEeecCCcccEEEEEEeeC-CCEEEEecCCCeEEEE
Q 028802 1 MTFAADAMKLL----GTSGDGTLSVCNLRKN--------T---VQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLY 64 (203)
Q Consensus 1 l~~sp~~~~l~----~~~~d~~i~v~d~~~~--------~---~~~~~~~~~~~i~~l~~~~~-~~~l~~~~~d~~i~v~ 64 (203)
|+|+|+|++|+ +++.|+.|+|||+.++ + ....+.+|...|.+++|+|+ +.+|++++.||.|++|
T Consensus 98 l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iw 177 (434)
T 2oit_A 98 LALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVL 177 (434)
T ss_dssp EEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred EEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEE
Confidence 57999999999 7888999999998654 1 24556678999999999997 7899999999999999
Q ss_pred EcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCC------cceEEEEEeCCCCe
Q 028802 65 SWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE------YPIESLALSHDRKF 137 (203)
Q Consensus 65 d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~ 137 (203)
|++.. ........ |...+.++ |+|+|++|++|+.||.|++||++ ++....+..+.. ..|.+++|++++.+
T Consensus 178 D~~~~-~~~~~~~~-~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~ 254 (434)
T 2oit_A 178 QVTET-VKVCATLP-STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVF 254 (434)
T ss_dssp EESSS-EEEEEEEC-GGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEE
T ss_pred EcCCC-cceeeccC-CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceE
Confidence 99854 44444556 78889999 99999999999999999999998 555555543321 26899999999887
Q ss_pred EEEEe-CCC------cEEEEeCCCcc
Q 028802 138 LGSIS-HDS------MLKLWDLDDIL 156 (203)
Q Consensus 138 l~~~~-~d~------~i~iwd~~~~~ 156 (203)
+++.+ .+| .+++|++++..
T Consensus 255 l~~~~~~dg~~~~~~~v~i~~l~~~~ 280 (434)
T 2oit_A 255 AIVYAAADGTLETSPDVVMALLPKKE 280 (434)
T ss_dssp EEEEEETTCCSSSCCEEEEEECCCTT
T ss_pred EEEEccCCCccCCCCceEEEEeccCC
Confidence 75443 443 38999998653
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.3e-21 Score=144.17 Aligned_cols=141 Identities=8% Similarity=-0.016 Sum_probs=107.6
Q ss_pred CCCeEEEEEcC-CCeEEEeecCCcccEEEEEEee---CCCEEEEecCCCeEEEEEcCCccccceeeecCCCC---ceeEE
Q 028802 15 GDGTLSVCNLR-KNTVQTRSEFSEEELTSVVLMK---NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN---SVDAL 87 (203)
Q Consensus 15 ~d~~i~v~d~~-~~~~~~~~~~~~~~i~~l~~~~---~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~---~v~~~ 87 (203)
.|+.|++|++. +++.+..+..|...+..++|+| ++..|++++.|++|++||+.+ ++.+.++.+ +.. .+.++
T Consensus 155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~T-Gk~l~tL~g-~~~~v~~v~~v 232 (356)
T 2w18_A 155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKT-GQLLKKMHI-DDSYQASVCHK 232 (356)
T ss_dssp TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTT-CCEEEEEEC-CC---CCCEEE
T ss_pred CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCC-CcEEEEEcC-CCcceeeeEEE
Confidence 38888888884 4777777778888888888888 678999999999999999985 577788875 433 45566
Q ss_pred -EeeCCCEE------------EEEcCCCcEEEEEccCCceeeee-----ccCCCcceEEEEEeCCCCeEEEEeCCCcEEE
Q 028802 88 -LKLDEDRV------------ITGSENGLISLVGILPNRIIQPI-----AEHSEYPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 88 -~~~~~~~l------------~~~~~dg~v~v~d~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 149 (203)
|+|+|.++ ++|+.|++|++||..+++.+..+ .+|.. .+.+..+ ++.++++++.|++|+|
T Consensus 233 afSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~-~~lsg~~--sg~~lASgS~DgTIkI 309 (356)
T 2w18_A 233 AYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAG-RFLEGDV--KDHCAAAILTSGTIAI 309 (356)
T ss_dssp EEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCC-CEEEEEE--ETTEEEEEETTSCEEE
T ss_pred EECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcc-eeEcccc--CCCEEEEEcCCCcEEE
Confidence 89999887 45778899999999999887655 24533 3443333 4889999999999999
Q ss_pred EeCCCcccCCC
Q 028802 150 WDLDDILKGSG 160 (203)
Q Consensus 150 wd~~~~~~~~~ 160 (203)
||+.+++..+.
T Consensus 310 WDl~tGk~l~t 320 (356)
T 2w18_A 310 WDLLLGQCTAL 320 (356)
T ss_dssp EETTTCSEEEE
T ss_pred EECCCCcEEEE
Confidence 99999875543
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-22 Score=156.74 Aligned_cols=150 Identities=8% Similarity=0.073 Sum_probs=120.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC-----------eEEEe----ecCCcccEEEEEEeeCCCEEE----EecCCCeE
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKN-----------TVQTR----SEFSEEELTSVVLMKNGRKVV----CGSQSGTV 61 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~-----------~~~~~----~~~~~~~i~~l~~~~~~~~l~----~~~~d~~i 61 (203)
|++++++.++++++.++ +++|+...- ..... ...+...|.+++|+|++++|+ +++.|+.|
T Consensus 42 lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v 120 (434)
T 2oit_A 42 LAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSII 120 (434)
T ss_dssp EEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEE
T ss_pred EEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCceE
Confidence 47889999999998887 888875311 11100 012456799999999999999 78889999
Q ss_pred EEEEcCCc-----c--c---cceeeecCCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEE
Q 028802 62 LLYSWGYF-----K--D---CSDRFVGLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESL 129 (203)
Q Consensus 62 ~v~d~~~~-----~--~---~~~~~~~~~~~~v~~~-~~~~-~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~ 129 (203)
++||+... . . .+..+.+ |...|.++ |+|+ +.+|++++.||.|++||++++..+.....|.. .|.++
T Consensus 121 ~iwd~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~-~v~~v 198 (434)
T 2oit_A 121 AFFDVRTFSNEAKQQKRPFAYHKLLKD-AGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTV-AVTSV 198 (434)
T ss_dssp EEEEHHHHHCTTCSSCCCSEEEECCCS-GGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGG-CEEEE
T ss_pred EEEEccccccCCcCCcceeeeeeccCC-CCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCC-ceeEE
Confidence 99998642 1 1 1345566 78899999 9998 88999999999999999998876666666644 89999
Q ss_pred EEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 130 ALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 130 ~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
+|+|+|++|++++.|+.|++||++
T Consensus 199 ~wspdg~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 199 CWSPKGKQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp EECTTSSCEEEEETTSCEEEECTT
T ss_pred EEcCCCCEEEEEcCCCcEEEEccC
Confidence 999999999999999999999998
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.7e-21 Score=148.98 Aligned_cols=153 Identities=13% Similarity=0.046 Sum_probs=130.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEE-----eecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcccccee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT-----RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~-----~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 75 (203)
++|+|++.++++++.++.|++||+.+++... .+..|...|.+++|+|++.++++++.++.|++||+.. +..+..
T Consensus 128 ~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~-~~~~~~ 206 (433)
T 3bws_A 128 VRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKT-LAYKAT 206 (433)
T ss_dssp CEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT-CCEEEE
T ss_pred EEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC-ceEEEE
Confidence 5789977788888889999999999988776 3457788999999999999999999999999999974 466677
Q ss_pred eecCCCCceeEE-EeeCCCEEEEE-cCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe--------CCC
Q 028802 76 FVGLSPNSVDAL-LKLDEDRVITG-SENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS--------HDS 145 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~-~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--------~d~ 145 (203)
+.. +...+.++ |+|+++.++++ ..++.|++||+++++.+..+..+ . .+.+++|+|++++|++++ .|+
T Consensus 207 ~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~-~~~~~~~~~~g~~l~~~~~~~~~~~~~dg 283 (433)
T 3bws_A 207 VDL-TGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-G-LPRGLLLSKDGKELYIAQFSASNQESGGG 283 (433)
T ss_dssp EEC-SSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-S-EEEEEEECTTSSEEEEEEEESCTTCSCCE
T ss_pred EcC-CCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-C-CceEEEEcCCCCEEEEEECCCCccccCCC
Confidence 777 88889999 99999988654 47999999999999888888765 3 689999999999998888 488
Q ss_pred cEEEEeCCCccc
Q 028802 146 MLKLWDLDDILK 157 (203)
Q Consensus 146 ~i~iwd~~~~~~ 157 (203)
.|++||+.++..
T Consensus 284 ~i~~~d~~~~~~ 295 (433)
T 3bws_A 284 RLGIYSMDKEKL 295 (433)
T ss_dssp EEEEEETTTTEE
T ss_pred eEEEEECCCCcE
Confidence 999999987653
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-20 Score=145.06 Aligned_cols=152 Identities=13% Similarity=0.152 Sum_probs=125.6
Q ss_pred CcccccCCEE-EEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEE-ecCCCeEEEEEcCCccccceeeec
Q 028802 1 MTFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-~~~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
++|+|++++| ++++.++.|++||+.+++.+..+..+. .+.+++|+|++++|++ ++.++.|++||+.. +..+..+..
T Consensus 37 ~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~-~~~~~~~~~ 114 (391)
T 1l0q_A 37 AVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTS-NTVAGTVKT 114 (391)
T ss_dssp EEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEEC
T ss_pred EEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCC-CeEEEEEeC
Confidence 4799999977 677789999999999999888887655 8999999999998754 55679999999975 455555554
Q ss_pred CCCCceeEE-EeeCCCEE-EEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeE-EEEeCCCcEEEEeCCCc
Q 028802 79 LSPNSVDAL-LKLDEDRV-ITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFL-GSISHDSMLKLWDLDDI 155 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l-~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~ 155 (203)
...+.++ |+|+++.+ ++++.++.|++||+.+++.+..+..+ . .+.+++|+|++++| ++++.++.|++||++++
T Consensus 115 --~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~ 190 (391)
T 1l0q_A 115 --GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-R-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTN 190 (391)
T ss_dssp --SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-S-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred --CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-C-CcceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 4466778 99999987 67778999999999999988888776 3 57999999999988 56678899999999887
Q ss_pred ccC
Q 028802 156 LKG 158 (203)
Q Consensus 156 ~~~ 158 (203)
...
T Consensus 191 ~~~ 193 (391)
T 1l0q_A 191 SVI 193 (391)
T ss_dssp EEE
T ss_pred eEE
Confidence 543
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.8e-20 Score=142.75 Aligned_cols=151 Identities=17% Similarity=0.191 Sum_probs=126.0
Q ss_pred CcccccCCEE-EEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEE-EEecCCCeEEEEEcCCccccceeeec
Q 028802 1 MTFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
++|+|+++.| ++++.++.|++||+.+++.+..+..+ ..+.+++|+|+++.| ++++.++.|++||+.. +.....+.
T Consensus 121 ~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~- 197 (391)
T 1l0q_A 121 LALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVT-NSVIDTVK- 197 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEE-
T ss_pred EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCC-CeEEEEEe-
Confidence 4799999977 67888999999999999888887765 456899999999887 5677889999999975 34555554
Q ss_pred CCCCceeEE-EeeCCCEEEEEc---CCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeE-EEEeCCCcEEEEeCC
Q 028802 79 LSPNSVDAL-LKLDEDRVITGS---ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFL-GSISHDSMLKLWDLD 153 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~---~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~iwd~~ 153 (203)
+...+.++ |+|+++++++++ .++.|++||+.+++.+..+..+ . .+.+++|+|++++| ++++.|+.|++||+.
T Consensus 198 -~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 198 -VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-P-DPAGIAVTPDGKKVYVALSFXNTVSVIDTA 274 (391)
T ss_dssp -CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-S-SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred -cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecC-C-CccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence 45567778 999999999888 6899999999999988888776 3 58899999999987 566789999999998
Q ss_pred Cccc
Q 028802 154 DILK 157 (203)
Q Consensus 154 ~~~~ 157 (203)
++..
T Consensus 275 ~~~~ 278 (391)
T 1l0q_A 275 TNTI 278 (391)
T ss_dssp TTEE
T ss_pred CCcE
Confidence 7654
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-19 Score=140.81 Aligned_cols=151 Identities=15% Similarity=0.122 Sum_probs=119.6
Q ss_pred CcccccCCEEEEEcCCC---eEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEE-EecCCC--eEEEEEcCCccccce
Q 028802 1 MTFAADAMKLLGTSGDG---TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSG--TVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~-~~~~d~--~i~v~d~~~~~~~~~ 74 (203)
++|||+|++|++++.++ .|++||+.+++.. .+..+...+.+++|+|+|++|+ +++.++ .|++||+.. +. ..
T Consensus 184 ~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~-~~-~~ 260 (415)
T 2hqs_A 184 PAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS-GQ-IR 260 (415)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-CC-EE
T ss_pred eEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCC-CC-EE
Confidence 47999999999998875 9999999988765 4566778899999999999887 555554 499999874 33 35
Q ss_pred eeecCCCCceeEE-EeeCCCEEEEEcC-CC--cEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCC---CcE
Q 028802 75 RFVGLSPNSVDAL-LKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD---SML 147 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~-dg--~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i 147 (203)
.+.. +...+.++ |+|+|+.|++++. ++ .|++||+.+++.. .+..+.. .+.+++|+|+|++|++++.+ ..|
T Consensus 261 ~l~~-~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~~-~~~~~~~spdG~~l~~~~~~~g~~~i 337 (415)
T 2hqs_A 261 QVTD-GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGS-QNQDADVSSDGKFMVMVSSNGGQQHI 337 (415)
T ss_dssp ECCC-CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSS-EEEEEEECTTSSEEEEEEECSSCEEE
T ss_pred eCcC-CCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEecCCC-cccCeEECCCCCEEEEEECcCCceEE
Confidence 6666 77788888 9999999998876 44 6788898877643 3444533 68899999999999988754 589
Q ss_pred EEEeCCCccc
Q 028802 148 KLWDLDDILK 157 (203)
Q Consensus 148 ~iwd~~~~~~ 157 (203)
++||+.++..
T Consensus 338 ~~~d~~~~~~ 347 (415)
T 2hqs_A 338 AKQDLATGGV 347 (415)
T ss_dssp EEEETTTCCE
T ss_pred EEEECCCCCE
Confidence 9999988754
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-19 Score=140.38 Aligned_cols=153 Identities=10% Similarity=0.054 Sum_probs=126.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEE-EecCCCeEEEEEcCCccccceeeecC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~-~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
++|+|+++++++++.|+.|++||+.+++.+..+..|...+.+++|+|++..++ +++.++.|++||+.. +..+..+..
T Consensus 175 ~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~-~~~~~~~~~- 252 (433)
T 3bws_A 175 ISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT-KLEIRKTDK- 252 (433)
T ss_dssp EEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT-TEEEEECCC-
T ss_pred EEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC-CcEEEEecC-
Confidence 46889999999999999999999999988888888888999999999999885 455799999999974 455555554
Q ss_pred CCCceeEE-EeeCCCEEEEEc--------CCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeE-EEEeCCCcEEE
Q 028802 80 SPNSVDAL-LKLDEDRVITGS--------ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFL-GSISHDSMLKL 149 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~--------~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~i 149 (203)
...+.++ |+|+++.+++++ .++.|++||+.+++.+..+... . .+.+++|+|+++++ ++++.++.|++
T Consensus 253 -~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~-~-~~~~~~~~~~g~~l~~~~~~~~~v~v 329 (433)
T 3bws_A 253 -IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPP-G-NKRHIVSGNTENKIYVSDMCCSKIEV 329 (433)
T ss_dssp -CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEE-E-CEEEEEECSSTTEEEEEETTTTEEEE
T ss_pred -CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCC-C-CcceEEECCCCCEEEEEecCCCEEEE
Confidence 4457777 899999999888 4889999999988877666332 3 68899999999865 56678999999
Q ss_pred EeCCCcccC
Q 028802 150 WDLDDILKG 158 (203)
Q Consensus 150 wd~~~~~~~ 158 (203)
||+.++...
T Consensus 330 ~d~~~~~~~ 338 (433)
T 3bws_A 330 YDLKEKKVQ 338 (433)
T ss_dssp EETTTTEEE
T ss_pred EECCCCcEE
Confidence 999876543
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.6e-20 Score=141.69 Aligned_cols=110 Identities=16% Similarity=0.162 Sum_probs=95.5
Q ss_pred CcccccCCEEEEEcCCC----eEEEEEcCCCeE----EEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc
Q 028802 1 MTFAADAMKLLGTSGDG----TLSVCNLRKNTV----QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC 72 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~----~i~v~d~~~~~~----~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 72 (203)
++|+|+++++++++.++ .+++|++..... ...+..|...|++++|+|+|++|++|+.|+.|+|||+.+ +++
T Consensus 225 v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~-~~~ 303 (365)
T 4h5i_A 225 INFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKD-LSM 303 (365)
T ss_dssp EEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTT-TEE
T ss_pred EEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCC-CcE
Confidence 47999999999998876 688999876543 345678889999999999999999999999999999985 456
Q ss_pred cee-eecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC
Q 028802 73 SDR-FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN 112 (203)
Q Consensus 73 ~~~-~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~ 112 (203)
+.. +.+ |...|+++ |+|+|++|++++.|++|+||++...
T Consensus 304 ~~~~~~g-H~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 304 SKIFKQA-HSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEETTS-SSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEecCc-ccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 655 467 99999999 9999999999999999999998643
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-18 Score=135.49 Aligned_cols=149 Identities=16% Similarity=0.137 Sum_probs=117.0
Q ss_pred CcccccCCEEE-EEcCCC--eEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC-CC--eEEEEEcCCccccce
Q 028802 1 MTFAADAMKLL-GTSGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG--TVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~-~~~~d~--~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~ 74 (203)
++|+|+|++|+ +++.++ .|++||+.+++. ..+..|...+.+++|+|+|++|++++. ++ .|++||+... ...
T Consensus 228 ~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~--~~~ 304 (415)
T 2hqs_A 228 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG--APQ 304 (415)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS--CCE
T ss_pred EEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCC--CEE
Confidence 47999999887 565555 499999988766 567777888999999999999888775 44 6777787642 234
Q ss_pred eeecCCCCceeEE-EeeCCCEEEEEcCC---CcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCC---cE
Q 028802 75 RFVGLSPNSVDAL-LKLDEDRVITGSEN---GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS---ML 147 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d---g~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~i 147 (203)
.+.. +...+..+ |+|+|++|++++.+ ..|++||+.+++.. .+..+ . .+.+++|+|+|++|++++.++ .|
T Consensus 305 ~l~~-~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~-~-~~~~~~~spdg~~l~~~s~~~~~~~l 380 (415)
T 2hqs_A 305 RITW-EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSST-F-LDETPSLAPNGTMVIYSSSQGMGSVL 380 (415)
T ss_dssp ECCC-SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCS-S-SCEEEEECTTSSEEEEEEEETTEEEE
T ss_pred EEec-CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCC-C-CcCCeEEcCCCCEEEEEEcCCCccEE
Confidence 4555 66677778 99999999988764 57999999988764 45555 3 689999999999999888776 79
Q ss_pred EEEeCCCcc
Q 028802 148 KLWDLDDIL 156 (203)
Q Consensus 148 ~iwd~~~~~ 156 (203)
++||+.+..
T Consensus 381 ~~~d~~g~~ 389 (415)
T 2hqs_A 381 NLVSTDGRF 389 (415)
T ss_dssp EEEETTSCC
T ss_pred EEEECCCCc
Confidence 999987554
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.8e-19 Score=144.84 Aligned_cols=141 Identities=11% Similarity=0.077 Sum_probs=111.1
Q ss_pred CcccccCCEEEEEcC-CC-----eEEEEEcCCCeEEEeecCCc------------------------ccEEEEEEeeCCC
Q 028802 1 MTFAADAMKLLGTSG-DG-----TLSVCNLRKNTVQTRSEFSE------------------------EELTSVVLMKNGR 50 (203)
Q Consensus 1 l~~sp~~~~l~~~~~-d~-----~i~v~d~~~~~~~~~~~~~~------------------------~~i~~l~~~~~~~ 50 (203)
++|||||++|++++. ++ .|++||+.+++....+..+. ..+.+++|+|||+
T Consensus 42 ~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~ 121 (741)
T 2ecf_A 42 PKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQ 121 (741)
T ss_dssp EEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSS
T ss_pred ceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCC
Confidence 479999999999988 88 89999999987766555432 2378899999999
Q ss_pred EEEEecCCCeEEEEEcCCccc--cceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCc---
Q 028802 51 KVVCGSQSGTVLLYSWGYFKD--CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY--- 124 (203)
Q Consensus 51 ~l~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~--- 124 (203)
+|++++. +.|++||+.. +. ....+.. +...+..+ |+|+|++|++++. +.|++||+.+++.......+...
T Consensus 122 ~l~~~~~-~~i~~~d~~~-~~~~~~~~l~~-~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~ 197 (741)
T 2ecf_A 122 RLLFPLG-GELYLYDLKQ-EGKAAVRQLTH-GEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGN 197 (741)
T ss_dssp EEEEEET-TEEEEEESSS-CSTTSCCBCCC-SSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEE
T ss_pred EEEEEeC-CcEEEEECCC-CCcceEEEccc-CCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCccceec
Confidence 9998886 9999999974 31 4455666 77778888 9999999998874 58999999988776554443220
Q ss_pred ------------ceEEEEEeCCCCeEEEEeCCC
Q 028802 125 ------------PIESLALSHDRKFLGSISHDS 145 (203)
Q Consensus 125 ------------~i~~~~~~~~~~~l~~~~~d~ 145 (203)
.+.+++|+|||++|++++.|+
T Consensus 198 g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~ 230 (741)
T 2ecf_A 198 GIAEFVADEEMDRHTGYWWAPDDSAIAYARIDE 230 (741)
T ss_dssp SCCCHHHHHHSCCCCSEEECTTSSCEEEEEEEC
T ss_pred cccceeeeeccccccceEECCCCCEEEEEEEcC
Confidence 147799999999999887665
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.79 E-value=7.4e-19 Score=144.88 Aligned_cols=140 Identities=14% Similarity=0.033 Sum_probs=107.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcc---cEEEEEEeeCCCEEEEecCC---------CeEEEEEcCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE---ELTSVVLMKNGRKVVCGSQS---------GTVLLYSWGY 68 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~---~i~~l~~~~~~~~l~~~~~d---------~~i~v~d~~~ 68 (203)
++|+|||+++++ +.||+|++||+.+++....+..+.. .|.+++|+|||++|++++.+ +.+++||+..
T Consensus 22 ~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~ 100 (723)
T 1xfd_A 22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH 100 (723)
T ss_dssp CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred cEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCC
Confidence 579999997766 7889999999999887777766654 48999999999999998764 7889999975
Q ss_pred ccccceeeec--CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCc-----------------ceEE
Q 028802 69 FKDCSDRFVG--LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY-----------------PIES 128 (203)
Q Consensus 69 ~~~~~~~~~~--~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~-----------------~i~~ 128 (203)
. .. ..+.. .+...+..+ |+|+|+.|++++. +.|++|++.+++.......+... .+.+
T Consensus 101 ~-~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~ 177 (723)
T 1xfd_A 101 G-DP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIA 177 (723)
T ss_dssp C-CC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEE
T ss_pred C-ce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcce
Confidence 3 33 33332 033347777 9999999999886 78999999988776655443221 1278
Q ss_pred EEEeCCCCeEEEEeCC
Q 028802 129 LALSHDRKFLGSISHD 144 (203)
Q Consensus 129 ~~~~~~~~~l~~~~~d 144 (203)
++|+|||++|++++.+
T Consensus 178 ~~~SpDg~~la~~~~~ 193 (723)
T 1xfd_A 178 HWWSPDGTRLAYAAIN 193 (723)
T ss_dssp EEECTTSSEEEEEEEE
T ss_pred EEECCCCCEEEEEEEC
Confidence 9999999999988754
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.78 E-value=9.1e-18 Score=123.33 Aligned_cols=153 Identities=13% Similarity=0.056 Sum_probs=114.6
Q ss_pred CcccccCCEEEEEcC--C--CeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEE-EecCCCeEEEEEcCCcccccee
Q 028802 1 MTFAADAMKLLGTSG--D--GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~--d--~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~-~~~~d~~i~v~d~~~~~~~~~~ 75 (203)
++|+|++++|++++. + ..|.+|++.++.. ..+..+ ..+..++|+|+++.|+ ++..++.+.+|++.........
T Consensus 90 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~ 167 (297)
T 2ojh_A 90 HGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETR 167 (297)
T ss_dssp CEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred eEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceE
Confidence 579999999999883 3 4455555555543 344433 3488999999999887 6778899999997543444455
Q ss_pred eecCCCCceeEE-EeeCCCEEEEEc-CCCcEEEEEcc-CCceeeeeccCCCcceEEEEEeCCCCeEEEEeCC--------
Q 028802 76 FVGLSPNSVDAL-LKLDEDRVITGS-ENGLISLVGIL-PNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD-------- 144 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~-~dg~v~v~d~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------- 144 (203)
+.. +...+.++ |+|+++.|++++ .++.+.+|++. .+..+..+..+. ..+.+++|+|++++|++++.+
T Consensus 168 ~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~~~~~~ 245 (297)
T 2ojh_A 168 LTH-GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSA-YGDWFPHPSPSGDKVVFVSYDADVFDHPR 245 (297)
T ss_dssp CCC-SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCS-EEEEEEEECTTSSEEEEEEEETTCCSCCS
T ss_pred ccc-CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCC-cccCCeEECCCCCEEEEEEcCCCCCcccc
Confidence 666 67788888 999999888766 48889999886 455666676664 378899999999999888765
Q ss_pred ---CcEEEEeCCCccc
Q 028802 145 ---SMLKLWDLDDILK 157 (203)
Q Consensus 145 ---~~i~iwd~~~~~~ 157 (203)
+.|++||+.++..
T Consensus 246 ~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 246 DLDVRVQLMDMDGGNV 261 (297)
T ss_dssp SEEEEEEEEETTSCSC
T ss_pred cCceEEEEEecCCCCc
Confidence 5699999987643
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.1e-17 Score=131.57 Aligned_cols=151 Identities=8% Similarity=0.053 Sum_probs=124.5
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEc--CCccccceeeecC
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSW--GYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~--~~~~~~~~~~~~~ 79 (203)
+|+|++.++++++.+++|.+||..+++++..+..+.. +..++|+|++++|++++.++.|.+||+ .+ ...+..+..
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t-~~~~~~i~~- 220 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKE-PTKVAEIKI- 220 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSS-CEEEEEEEC-
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCC-CcEEEEEec-
Confidence 4788998999999999999999999999888874333 889999999999999999999999999 54 455666664
Q ss_pred CCCceeEE-Eee----CCCEEEEEcC-CCcEEEEEccCCceeeeeccC----------CCcceEEEEEeCCCCeE-EEEe
Q 028802 80 SPNSVDAL-LKL----DEDRVITGSE-NGLISLVGILPNRIIQPIAEH----------SEYPIESLALSHDRKFL-GSIS 142 (203)
Q Consensus 80 ~~~~v~~~-~~~----~~~~l~~~~~-dg~v~v~d~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~l-~~~~ 142 (203)
...+..+ |+| +|+++++++. ++.|.+||..+++++..+..+ ....+.++.++|++..+ ++..
T Consensus 221 -g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~ 299 (543)
T 1nir_A 221 -GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK 299 (543)
T ss_dssp -CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred -CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence 4456777 999 9999999885 899999999999988877642 23368899999987654 5666
Q ss_pred CCCcEEEEeCCCcc
Q 028802 143 HDSMLKLWDLDDIL 156 (203)
Q Consensus 143 ~d~~i~iwd~~~~~ 156 (203)
.++.|.+||+.+..
T Consensus 300 ~~g~i~vvd~~~~~ 313 (543)
T 1nir_A 300 ETGKVLLVNYKDID 313 (543)
T ss_dssp TTTEEEEEECTTSS
T ss_pred CCCeEEEEEecCCC
Confidence 88999999997643
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=8.9e-17 Score=121.37 Aligned_cols=156 Identities=12% Similarity=0.114 Sum_probs=121.3
Q ss_pred CcccccCCEEE-EEcCCCeEEEEEcCCCeEEEeecCCcc---------cEEEEEEeeCCCEEEEec--CCCeEEEEEcCC
Q 028802 1 MTFAADAMKLL-GTSGDGTLSVCNLRKNTVQTRSEFSEE---------ELTSVVLMKNGRKVVCGS--QSGTVLLYSWGY 68 (203)
Q Consensus 1 l~~sp~~~~l~-~~~~d~~i~v~d~~~~~~~~~~~~~~~---------~i~~l~~~~~~~~l~~~~--~d~~i~v~d~~~ 68 (203)
++|+|+|++++ +...++.|.+||..+++.+..+..+.. .+.+++|+|+++++++++ .++.|.+||..+
T Consensus 94 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~ 173 (353)
T 3vgz_A 94 ATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN 173 (353)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT
T ss_pred EEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC
Confidence 46899999665 455679999999999988777765432 278899999999887766 478899999974
Q ss_pred ccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC---CcceEEEEEeCCCCeEEEEe-C
Q 028802 69 FKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS---EYPIESLALSHDRKFLGSIS-H 143 (203)
Q Consensus 69 ~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~-~ 143 (203)
+.....+.. +...+..+ |+|+++++++++.++.|.+||+.+++.+..+.... ...+..++|+|++++|++++ .
T Consensus 174 -~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 251 (353)
T 3vgz_A 174 -IKLKTAIQN-TGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK 251 (353)
T ss_dssp -TEEEEEECC-CCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS
T ss_pred -CceEEEecC-CCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC
Confidence 455555653 34446667 89999999999999999999999998887765411 22577899999999877666 4
Q ss_pred CCcEEEEeCCCcccC
Q 028802 144 DSMLKLWDLDDILKG 158 (203)
Q Consensus 144 d~~i~iwd~~~~~~~ 158 (203)
++.|.+||+.++...
T Consensus 252 ~~~v~~~d~~~~~~~ 266 (353)
T 3vgz_A 252 AAEVLVVDTRNGNIL 266 (353)
T ss_dssp SSEEEEEETTTCCEE
T ss_pred CCEEEEEECCCCcEE
Confidence 599999999877543
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.77 E-value=3e-17 Score=123.04 Aligned_cols=150 Identities=10% Similarity=0.002 Sum_probs=116.0
Q ss_pred CcccccCCEEEEEc------------CCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCC
Q 028802 1 MTFAADAMKLLGTS------------GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY 68 (203)
Q Consensus 1 l~~sp~~~~l~~~~------------~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~ 68 (203)
++|+|+|++|+++. .++.|.+||+.+++.+..+.. ...+.+++|+|++++|+++ ++.|.+||+..
T Consensus 87 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~ 163 (337)
T 1pby_B 87 AALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEA 163 (337)
T ss_dssp EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTT
T ss_pred eEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCC
Confidence 47899999998885 579999999999888777764 3457789999999988887 58899999864
Q ss_pred ccccceeeecC-----------------------------------------------------------------CCCc
Q 028802 69 FKDCSDRFVGL-----------------------------------------------------------------SPNS 83 (203)
Q Consensus 69 ~~~~~~~~~~~-----------------------------------------------------------------~~~~ 83 (203)
. .....+... +...
T Consensus 164 ~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 242 (337)
T 1pby_B 164 G-TLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVF 242 (337)
T ss_dssp T-EEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred C-cEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCc
Confidence 2 222111100 1112
Q ss_pred eeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 84 VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
+..+ |+|++++++++ ++.|++||+.+++.+..+..+ . .+.+++|+|+|++|++++.++.|.+||+.++...
T Consensus 243 ~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~-~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 243 YFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-H-SYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp EEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-S-CCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred eeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-C-ceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence 3346 89999999888 689999999999888777655 3 5789999999999998889999999999887644
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-17 Score=121.16 Aligned_cols=149 Identities=11% Similarity=0.071 Sum_probs=111.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC-CeEEEeecCC-cccEEEEEEeeCCCEEEEec--CCCeEEEEEcCCccccceee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRK-NTVQTRSEFS-EEELTSVVLMKNGRKVVCGS--QSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~-~~~i~~l~~~~~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~ 76 (203)
++|+|+|++|++++ ++.|++||+.+ ++.......+ ...+.+++|+|++++|++++ .++...+|.+.........+
T Consensus 47 ~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (297)
T 2ojh_A 47 PNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLM 125 (297)
T ss_dssp EEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEEC
T ss_pred eEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEe
Confidence 47999999999986 68999999998 7776666555 36788999999999999988 33455666554323334445
Q ss_pred ecCCCCceeEE-EeeCCCEEE-EEcCCCcEEEEEccC-CceeeeeccCCCcceEEEEEeCCCCeEEEEe-CCCcEEEEeC
Q 028802 77 VGLSPNSVDAL-LKLDEDRVI-TGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDL 152 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~-~~~~dg~v~v~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~ 152 (203)
.. + ..+..+ |+|+++.|+ ++..++.+.+|++.. +.....+..+.. .+.+++|+|++++|++++ .++.+.+|++
T Consensus 126 ~~-~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~i~~~ 202 (297)
T 2ojh_A 126 TK-N-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEG-RNDGPDYSPDGRWIYFNSSRTGQMQIWRV 202 (297)
T ss_dssp CS-S-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSS-CEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ec-C-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCC-ccccceECCCCCEEEEEecCCCCccEEEE
Confidence 44 3 347777 999999887 677889889988642 233344555534 799999999999888766 5889999987
Q ss_pred C
Q 028802 153 D 153 (203)
Q Consensus 153 ~ 153 (203)
.
T Consensus 203 ~ 203 (297)
T 2ojh_A 203 R 203 (297)
T ss_dssp E
T ss_pred C
Confidence 5
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=7.8e-17 Score=121.69 Aligned_cols=154 Identities=9% Similarity=0.042 Sum_probs=121.4
Q ss_pred CcccccCCEEEEEc--CCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028802 1 MTFAADAMKLLGTS--GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
++|+|++++++++. .++.|.+||+.+++.+..+..+...+.+++|+|++++|++++.++.+.+||+.+ +.....+..
T Consensus 146 ~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~-~~~~~~~~~ 224 (353)
T 3vgz_A 146 LVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTAD-NKILSRKKL 224 (353)
T ss_dssp EEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTT-TEEEEEEEC
T ss_pred EEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCC-CeEEEEEEc
Confidence 46899999887765 478999999999998888875556688899999999999999999999999975 344444432
Q ss_pred ---CCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe-CCCcEEEEeC
Q 028802 79 ---LSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDL 152 (203)
Q Consensus 79 ---~~~~~v~~~-~~~~~~~l~~~~~-dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~ 152 (203)
.+...+..+ |+|+++++++++. ++.|.+||+.+++.+..+.... ...++|+|+++++++++ .++.|.+||+
T Consensus 225 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 301 (353)
T 3vgz_A 225 LDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE---SLAVLFNPARNEAYVTHRQAGKVSVIDA 301 (353)
T ss_dssp CCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC---CceEEECCCCCEEEEEECCCCeEEEEEC
Confidence 023345667 8999998777665 4899999999998887777552 25689999999776655 6899999999
Q ss_pred CCcccC
Q 028802 153 DDILKG 158 (203)
Q Consensus 153 ~~~~~~ 158 (203)
.++...
T Consensus 302 ~~~~~~ 307 (353)
T 3vgz_A 302 KSYKVV 307 (353)
T ss_dssp TTTEEE
T ss_pred CCCeEE
Confidence 887644
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.3e-17 Score=130.70 Aligned_cols=153 Identities=14% Similarity=0.120 Sum_probs=119.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEc--CCCeEEEeecCCcccEEEEEEee----CCCEEEEecC-CCeEEEEEcCCccccc
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNL--RKNTVQTRSEFSEEELTSVVLMK----NGRKVVCGSQ-SGTVLLYSWGYFKDCS 73 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~--~~~~~~~~~~~~~~~i~~l~~~~----~~~~l~~~~~-d~~i~v~d~~~~~~~~ 73 (203)
++|+|+|++|++++.+++|.+||+ .+++.+..+.. ...+..++|+| +|++|++++. +++|.+||..+ .+++
T Consensus 184 v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t-~~~~ 261 (543)
T 1nir_A 184 SRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET-LEPK 261 (543)
T ss_dssp EEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT-CCEE
T ss_pred EEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc-cccc
Confidence 469999999999999999999999 78888888874 45679999999 9999998885 89999999875 4555
Q ss_pred eeeecCC-----------CCceeEE-EeeCCCEE-EEEcCCCcEEEEEccCCceee--eeccCCCcceEEEEEeCCCCeE
Q 028802 74 DRFVGLS-----------PNSVDAL-LKLDEDRV-ITGSENGLISLVGILPNRIIQ--PIAEHSEYPIESLALSHDRKFL 138 (203)
Q Consensus 74 ~~~~~~~-----------~~~v~~~-~~~~~~~l-~~~~~dg~v~v~d~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l 138 (203)
..+.. + ...+..+ ++|++..+ ++...++.|.+||+.+.+.+. .+. + ...+..+.|+|+|++|
T Consensus 262 ~~i~~-~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~-~~~~~~~~~spdg~~l 338 (543)
T 1nir_A 262 QIVST-RGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-A-APFLHDGGWDSSHRYF 338 (543)
T ss_dssp EEEEC-CEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-C-CSSCCCEEECTTSCEE
T ss_pred eeecc-cCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-c-CcCccCceECCCCCEE
Confidence 55543 2 1256677 88876654 556678999999998765443 333 2 2257889999999987
Q ss_pred EEEe-CCCcEEEEeCCCcccC
Q 028802 139 GSIS-HDSMLKLWDLDDILKG 158 (203)
Q Consensus 139 ~~~~-~d~~i~iwd~~~~~~~ 158 (203)
++++ .+++|.+||+.++...
T Consensus 339 ~va~~~~~~v~v~D~~tg~l~ 359 (543)
T 1nir_A 339 MTAANNSNKVAVIDSKDRRLS 359 (543)
T ss_dssp EEEEGGGTEEEEEETTTTEEE
T ss_pred EEEecCCCeEEEEECCCCeEE
Confidence 7655 6899999999987643
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-16 Score=120.38 Aligned_cols=151 Identities=14% Similarity=0.200 Sum_probs=110.9
Q ss_pred CcccccCCEEEEEcCC-CeEEEEEcC--CCe--EEEeecCCcccEEEEEEeeCCCEEEEecC-CCeEEEEEcCC--cccc
Q 028802 1 MTFAADAMKLLGTSGD-GTLSVCNLR--KNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGY--FKDC 72 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d-~~i~v~d~~--~~~--~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d~~i~v~d~~~--~~~~ 72 (203)
++|+|++++|++++.+ +.|.+|++. ++. .+..+..+. .+..++|+|++++|++++. ++.|.+||+.. ....
T Consensus 43 ~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~ 121 (343)
T 1ri6_A 43 MVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV 121 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEE
T ss_pred EEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccc
Confidence 4799999988888776 999999997 444 334444433 7889999999998876654 88999999941 1223
Q ss_pred ceeeecCCCCceeEE-EeeCCCEEEEEc-CCCcEEEEEccC-Cceee----eeccCCCcceEEEEEeCCCCeEEEEe-CC
Q 028802 73 SDRFVGLSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILP-NRIIQ----PIAEHSEYPIESLALSHDRKFLGSIS-HD 144 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~~~l~~~~-~dg~v~v~d~~~-~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~-~d 144 (203)
...+.. ...+.++ |+|+++++++++ .++.|++|++.+ ++... .+..+....+..++|+|++++|++++ .+
T Consensus 122 ~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~ 199 (343)
T 1ri6_A 122 VDVVEG--LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELN 199 (343)
T ss_dssp EEEECC--CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTT
T ss_pred cccccC--CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCC
Confidence 333333 3446667 999999888877 789999999987 54432 23333233688899999999876555 78
Q ss_pred CcEEEEeCCC
Q 028802 145 SMLKLWDLDD 154 (203)
Q Consensus 145 ~~i~iwd~~~ 154 (203)
+.|.+|++..
T Consensus 200 ~~i~~~~~~~ 209 (343)
T 1ri6_A 200 SSVDVWELKD 209 (343)
T ss_dssp TEEEEEESSC
T ss_pred CEEEEEEecC
Confidence 9999999954
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-16 Score=120.06 Aligned_cols=153 Identities=8% Similarity=0.063 Sum_probs=114.7
Q ss_pred CcccccCCEEEEEcCCC---eEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEe-cCCCe-EEEEEcCCccccc--
Q 028802 1 MTFAADAMKLLGTSGDG---TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGT-VLLYSWGYFKDCS-- 73 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~d~~-i~v~d~~~~~~~~-- 73 (203)
++|+|+|++|+++..++ .|.+||+.+++.+..+..+ ..+.+++|+|++++|+++ ..++. +.+|++...+...
T Consensus 89 ~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~ 167 (331)
T 3u4y_A 89 VDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDT 167 (331)
T ss_dssp EEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEE
T ss_pred eEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeec
Confidence 47899999999655553 8999999999888777653 446899999999866555 45577 9999987433221
Q ss_pred -eeeecCCCCceeEE-EeeCCCEEEEEc-CCCcEEEEEccCCce---eeeeccCCCcceEEEEEeCCCCeEEEEe-CCCc
Q 028802 74 -DRFVGLSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRI---IQPIAEHSEYPIESLALSHDRKFLGSIS-HDSM 146 (203)
Q Consensus 74 -~~~~~~~~~~v~~~-~~~~~~~l~~~~-~dg~v~v~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~ 146 (203)
..... ....+..+ |+|+|+++++++ .++.|++||+.+++. +..+..+ . .+..++|+|+|++|++++ .++.
T Consensus 168 ~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~-~~~~~~~spdg~~l~v~~~~~~~ 244 (331)
T 3u4y_A 168 GQEFIS-GGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-N-LPGTIVVSRDGSTVYVLTESTVD 244 (331)
T ss_dssp EEEEEC-SSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-S-CCCCEEECTTSSEEEEECSSEEE
T ss_pred CCcccc-CCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-C-CCceEEECCCCCEEEEEEcCCCE
Confidence 11112 34456777 999999666554 688999999998887 7777655 3 578899999999876655 5788
Q ss_pred EEEEeCCCccc
Q 028802 147 LKLWDLDDILK 157 (203)
Q Consensus 147 i~iwd~~~~~~ 157 (203)
|.+||+.++..
T Consensus 245 i~~~d~~~~~~ 255 (331)
T 3u4y_A 245 VFNFNQLSGTL 255 (331)
T ss_dssp EEEEETTTTEE
T ss_pred EEEEECCCCce
Confidence 99999988765
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.4e-16 Score=117.39 Aligned_cols=148 Identities=12% Similarity=0.086 Sum_probs=114.0
Q ss_pred cccccCCE-EEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC-CCeEEEEEcCCcccc-ceeeec
Q 028802 2 TFAADAMK-LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDC-SDRFVG 78 (203)
Q Consensus 2 ~~sp~~~~-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~-~~~~~~ 78 (203)
.|.+++++ +++.+.++.|.+||+.+++.+..+..+...+ .++|+|+++++++++. ++.|.+||+... .. ...+..
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~-~~~~~~~~~ 81 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLE-PPKVVAIQE 81 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSS-SCEEEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCC-ceeEEeccc
Confidence 36666665 5677788999999999998887777666667 9999999997766665 889999999753 44 556665
Q ss_pred CCCCceeEE-EeeCCCEEEEEcCCC---cEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEE-eCCCc-EEEEeC
Q 028802 79 LSPNSVDAL-LKLDEDRVITGSENG---LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSI-SHDSM-LKLWDL 152 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~dg---~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~-i~iwd~ 152 (203)
+..+..++ |+|++++++++..++ .|.+||+.+++.+..+..+ . ...+++|+|+|++|+++ ..++. |.+|++
T Consensus 82 -~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~-~~~~~~~spdg~~l~~~~~~~~~~i~~~~~ 158 (331)
T 3u4y_A 82 -GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-Y-DAVGIAISPNGNGLILIDRSSANTVRRFKI 158 (331)
T ss_dssp -CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-T-TEEEEEECTTSSCEEEEEETTTTEEEEEEE
T ss_pred -CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-C-CccceEECCCCCEEEEEecCCCceEEEEEE
Confidence 56666646 999999999655553 8999999999888877665 3 57899999999876655 45578 999998
Q ss_pred CC
Q 028802 153 DD 154 (203)
Q Consensus 153 ~~ 154 (203)
..
T Consensus 159 ~~ 160 (331)
T 3u4y_A 159 DA 160 (331)
T ss_dssp CT
T ss_pred CC
Confidence 64
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-17 Score=136.08 Aligned_cols=153 Identities=14% Similarity=0.078 Sum_probs=112.9
Q ss_pred CcccccCCEEEEEcCC---------CeEEEEEcCCCeEEEeec---CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCC
Q 028802 1 MTFAADAMKLLGTSGD---------GTLSVCNLRKNTVQTRSE---FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY 68 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d---------~~i~v~d~~~~~~~~~~~---~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~ 68 (203)
++|||||++|++++.+ +.|++||+.+++. ..+. .+...+..++|+|||+.|++++. +.|++||+..
T Consensus 66 ~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~ 143 (723)
T 1xfd_A 66 YEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVG 143 (723)
T ss_dssp EEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSS
T ss_pred EEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCC
Confidence 4699999999998764 7899999998865 3333 34445888999999999998876 7899999874
Q ss_pred ccccceeeecCCCCce------------------eEE-EeeCCCEEEEEcCCC---------------------------
Q 028802 69 FKDCSDRFVGLSPNSV------------------DAL-LKLDEDRVITGSENG--------------------------- 102 (203)
Q Consensus 69 ~~~~~~~~~~~~~~~v------------------~~~-~~~~~~~l~~~~~dg--------------------------- 102 (203)
+........ +...+ ..+ |+|+|+.|++++.++
T Consensus 144 -g~~~~~~~~-~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (723)
T 1xfd_A 144 -KQAIRVVST-GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKA 221 (723)
T ss_dssp -SCCEEEECC-CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBT
T ss_pred -CceEEEecC-CCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCC
Confidence 343333332 22222 567 999999999887543
Q ss_pred -------cEEEEEccCCceeeeeccCC-----CcceEEEEEeCCCCeEEEEeC----CCcEEEEeCCCccc
Q 028802 103 -------LISLVGILPNRIIQPIAEHS-----EYPIESLALSHDRKFLGSISH----DSMLKLWDLDDILK 157 (203)
Q Consensus 103 -------~v~v~d~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~ 157 (203)
.|++||+.+++....+..+. ...+..++|+|||++|++... +..|++||+.++..
T Consensus 222 G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~ 292 (723)
T 1xfd_A 222 GSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC 292 (723)
T ss_dssp TSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCE
T ss_pred CCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcc
Confidence 79999998887655555431 236889999999998876653 35799999987653
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.6e-17 Score=134.10 Aligned_cols=151 Identities=12% Similarity=0.069 Sum_probs=115.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe--EEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
++|||||++|++++. +.|++||+.++. ....+..+...+..++|+|||++|++++ ++.|++||+.. +........
T Consensus 114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~-g~~~~~~~~ 190 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLAS-GRQMQLTAD 190 (741)
T ss_dssp CEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTT-TEEEECCCC
T ss_pred eEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCC-CCEEEeccC
Confidence 479999999999887 999999998872 3345667778899999999999999887 46899999974 333332222
Q ss_pred CCCCc----------------eeEE-EeeCCCEEEEEcCCC---------------------------------cEEEEE
Q 028802 79 LSPNS----------------VDAL-LKLDEDRVITGSENG---------------------------------LISLVG 108 (203)
Q Consensus 79 ~~~~~----------------v~~~-~~~~~~~l~~~~~dg---------------------------------~v~v~d 108 (203)
+... +..+ |+|+|++|++++.++ .|++||
T Consensus 191 -~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d 269 (741)
T 2ecf_A 191 -GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVIS 269 (741)
T ss_dssp -CCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEEC
T ss_pred -CccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEE
Confidence 2221 3567 999999999987665 788999
Q ss_pred ccC-Cceeeeecc--CCCcceEEEEEeCCCCeEEEEeC-----CCcEEEEeCCCccc
Q 028802 109 ILP-NRIIQPIAE--HSEYPIESLALSHDRKFLGSISH-----DSMLKLWDLDDILK 157 (203)
Q Consensus 109 ~~~-~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~ 157 (203)
+.+ ++....... + ...+..++| |||++|++++. +..|++||+.++..
T Consensus 270 ~~~~~~~~~~~~~~~~-~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~ 324 (741)
T 2ecf_A 270 PAEQAQTQWIDLGKEQ-DIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ 324 (741)
T ss_dssp SSTTCCCEEECCCSCS-SEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE
T ss_pred CCCCCceEEecCCCCc-ceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce
Confidence 988 776544432 4 337899999 99999987664 56799999988753
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=7e-17 Score=138.34 Aligned_cols=149 Identities=12% Similarity=0.137 Sum_probs=123.6
Q ss_pred Cccc-ccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcc-cEEEEEEeeCCCEEEEecCCCeEE-EEEcCCccccceeee
Q 028802 1 MTFA-ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE-ELTSVVLMKNGRKVVCGSQSGTVL-LYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~s-p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-~i~~l~~~~~~~~l~~~~~d~~i~-v~d~~~~~~~~~~~~ 77 (203)
++|| |+|++|++++ ++.|++|++.++... .+..+.. .+..++|+ +++.|++++.++.+. +|++.. +. ...+.
T Consensus 301 ~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~-~~-~~~l~ 375 (1045)
T 1k32_A 301 EDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT-GK-AEKFE 375 (1045)
T ss_dssp EEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT-CC-EEECC
T ss_pred eeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCC-CC-ceEec
Confidence 4689 9999998887 689999999887654 3556666 89999999 999999988888888 889864 23 33444
Q ss_pred cCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCC----------c
Q 028802 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS----------M 146 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----------~ 146 (203)
. +...+..+ |+|+|++|++++.++.|++||+.+++....+..|.. .+.+++|+|||++|++++.++ .
T Consensus 376 ~-~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~-~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~ 453 (1045)
T 1k32_A 376 E-NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREA-MITDFTISDNSRFIAYGFPLKHGETDGYVMQA 453 (1045)
T ss_dssp C-CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS-CCCCEEECTTSCEEEEEEEECSSTTCSCCEEE
T ss_pred C-CccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCC-CccceEECCCCCeEEEEecCccccccCCCCCe
Confidence 6 77788888 999999999999999999999999988877767744 789999999999998887644 8
Q ss_pred EEEEeCCCcc
Q 028802 147 LKLWDLDDIL 156 (203)
Q Consensus 147 i~iwd~~~~~ 156 (203)
|++||+.++.
T Consensus 454 i~l~d~~~g~ 463 (1045)
T 1k32_A 454 IHVYDMEGRK 463 (1045)
T ss_dssp EEEEETTTTE
T ss_pred EEEEECCCCc
Confidence 9999998765
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.2e-17 Score=134.52 Aligned_cols=139 Identities=16% Similarity=0.076 Sum_probs=101.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcc---cEEEEEEeeCCCEEEEecC---------CCeEEEEEcCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE---ELTSVVLMKNGRKVVCGSQ---------SGTVLLYSWGY 68 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~---~i~~l~~~~~~~~l~~~~~---------d~~i~v~d~~~ 68 (203)
++|+|+|+++++ +.|++|++||+.+++....+..+.. .+.+++|+|||++|++++. ++.|++||+..
T Consensus 21 ~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~ 99 (719)
T 1z68_A 21 PNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN 99 (719)
T ss_dssp CEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred cEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC
Confidence 479999965555 4689999999999887766655433 3889999999999998876 68999999974
Q ss_pred ccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcce-----------------EEEE
Q 028802 69 FKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPI-----------------ESLA 130 (203)
Q Consensus 69 ~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i-----------------~~~~ 130 (203)
+..+.... ....+..+ |+|+|+.|+++. ++.|++|++.+++............| .+++
T Consensus 100 -g~~~~~~~--l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~ 175 (719)
T 1z68_A 100 -GEFVRGNE--LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALW 175 (719)
T ss_dssp -TEECCSSC--CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEE
T ss_pred -Ccccccee--cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEE
Confidence 33311011 12346667 999999999885 78999999988776543321111112 4799
Q ss_pred EeCCCCeEEEEeCC
Q 028802 131 LSHDRKFLGSISHD 144 (203)
Q Consensus 131 ~~~~~~~l~~~~~d 144 (203)
|+|||++|++++.|
T Consensus 176 wSPDG~~la~~~~d 189 (719)
T 1z68_A 176 WSPNGKFLAYAEFN 189 (719)
T ss_dssp ECTTSSEEEEEEEE
T ss_pred ECCCCCEEEEEEEC
Confidence 99999999988755
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=9.3e-16 Score=115.15 Aligned_cols=151 Identities=8% Similarity=0.118 Sum_probs=106.6
Q ss_pred CcccccCCEEEEEc-CCCeEEEEEcCC-CeEEE----eec-CCcccEEEEEEeeCCCEEEEe-cCCCeEEEEEcCCc-cc
Q 028802 1 MTFAADAMKLLGTS-GDGTLSVCNLRK-NTVQT----RSE-FSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYF-KD 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~-~d~~i~v~d~~~-~~~~~----~~~-~~~~~i~~l~~~~~~~~l~~~-~~d~~i~v~d~~~~-~~ 71 (203)
++|+|++++|++++ .++.|++|++.+ ++... .+. .....+..++|+|++++|+++ ..++.+.+|++... +.
T Consensus 134 ~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~ 213 (343)
T 1ri6_A 134 ANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGN 213 (343)
T ss_dssp CEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSC
T ss_pred EEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc
Confidence 57999999888776 789999999987 54432 222 234578899999999977655 47899999999531 11
Q ss_pred c--ceeeecC--C---CCceeEE-EeeCCCEEEEE-cCCCcEEEEEcc--CC--ceeeeeccCCCcceEEEEEeCCCCeE
Q 028802 72 C--SDRFVGL--S---PNSVDAL-LKLDEDRVITG-SENGLISLVGIL--PN--RIIQPIAEHSEYPIESLALSHDRKFL 138 (203)
Q Consensus 72 ~--~~~~~~~--~---~~~v~~~-~~~~~~~l~~~-~~dg~v~v~d~~--~~--~~~~~~~~~~~~~i~~~~~~~~~~~l 138 (203)
. ...+... . ...+..+ |+|++++++++ ..++.|.+|++. ++ +.+..+..+ . .+..++|+|++++|
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~-~-~~~~~~~s~dg~~l 291 (343)
T 1ri6_A 214 IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE-T-QPRGFNVDHSGKYL 291 (343)
T ss_dssp CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS-S-SCCCEEECTTSSEE
T ss_pred EEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC-C-ccceEEECCCCCEE
Confidence 1 1222210 1 1234567 89999888754 478999999998 33 344445444 3 47889999999998
Q ss_pred EEEe-CCCcEEEEeCC
Q 028802 139 GSIS-HDSMLKLWDLD 153 (203)
Q Consensus 139 ~~~~-~d~~i~iwd~~ 153 (203)
++++ .++.|.+|++.
T Consensus 292 ~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 292 IAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEECTTTCEEEEEEEE
T ss_pred EEecCCCCeEEEEEEc
Confidence 8887 68999999553
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.9e-16 Score=117.52 Aligned_cols=153 Identities=10% Similarity=0.100 Sum_probs=107.0
Q ss_pred CcccccCCEEEEEcC---CCeEEEEEcCCCe--EEEeecCCcccEEEEEEeeCCCEEEEec-CCCeEEEEEcCCcccc--
Q 028802 1 MTFAADAMKLLGTSG---DGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDC-- 72 (203)
Q Consensus 1 l~~sp~~~~l~~~~~---d~~i~v~d~~~~~--~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~-- 72 (203)
|+|+|+|+ |++++. ++.|++|++.++. .+..+..+...+..++|+|++++|++++ .++.+.+|++...+..
T Consensus 45 ~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~ 123 (347)
T 3hfq_A 45 LALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTL 123 (347)
T ss_dssp EEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEE
T ss_pred EEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeee
Confidence 57899999 555543 6899999997765 3344444566788999999999888877 6799999999632221
Q ss_pred ceeeecCC--------CCceeEE-EeeCCCEEEEEcCCCcEEEEEcc-CCcee--eeeccCCCcceEEEEEeCCCCeEEE
Q 028802 73 SDRFVGLS--------PNSVDAL-LKLDEDRVITGSENGLISLVGIL-PNRII--QPIAEHSEYPIESLALSHDRKFLGS 140 (203)
Q Consensus 73 ~~~~~~~~--------~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~-~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~ 140 (203)
+..+.... ...+.++ |+|+|+++++...++.|++|++. +++.. ..+..+....+..++|+|+|++|++
T Consensus 124 ~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v 203 (347)
T 3hfq_A 124 TDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFL 203 (347)
T ss_dssp EEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred cceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEE
Confidence 22222100 1136667 89999966666678899999998 45433 2222322335788999999997766
Q ss_pred E-eCCCcEEEEeCCC
Q 028802 141 I-SHDSMLKLWDLDD 154 (203)
Q Consensus 141 ~-~~d~~i~iwd~~~ 154 (203)
+ ..++.|.+|++..
T Consensus 204 ~~~~~~~v~v~~~~~ 218 (347)
T 3hfq_A 204 AGELSSQIASLKYDT 218 (347)
T ss_dssp EETTTTEEEEEEEET
T ss_pred EeCCCCEEEEEEecC
Confidence 5 4688999999874
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=5.3e-16 Score=132.92 Aligned_cols=149 Identities=11% Similarity=0.025 Sum_probs=123.1
Q ss_pred CcccccCCEEEEEcCCCeEE-EEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 1 MTFAADAMKLLGTSGDGTLS-VCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~-v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
++|+ +|+.|++++.++.|+ +|++.++.... +..+...+..++|+|+|++|++++.++.|++||+.+ +.....+..
T Consensus 343 ~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~t-g~~~~~~~~- 418 (1045)
T 1k32_A 343 RGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET-GKPTVIERS- 418 (1045)
T ss_dssp ECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEEC-
T ss_pred eeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCC-CceEEeccC-
Confidence 3688 999999988888899 99998776543 447778899999999999999999999999999974 455555556
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCC----------cEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEE
Q 028802 80 SPNSVDAL-LKLDEDRVITGSENG----------LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLK 148 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~dg----------~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 148 (203)
+...+..+ |+|+|++|++++.++ .|++||+.+++ +..+..+.. .+..++|+|+|++|++++.++...
T Consensus 419 ~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~-~~~~~~~spdG~~l~~~s~~~~~~ 496 (1045)
T 1k32_A 419 REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENS-HDYAPAFDADSKNLYYLSYRSLDP 496 (1045)
T ss_dssp SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSS-BEEEEEECTTSCEEEEEESCCCCC
T ss_pred CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCc-ccCCceEcCCCCEEEEEecccCCc
Confidence 78888888 999999999887654 89999999877 556666644 688899999999999999888888
Q ss_pred EEeCCCc
Q 028802 149 LWDLDDI 155 (203)
Q Consensus 149 iwd~~~~ 155 (203)
+|+....
T Consensus 497 ~~~~~~~ 503 (1045)
T 1k32_A 497 SPDRVVL 503 (1045)
T ss_dssp EECSSSS
T ss_pred Ccchhcc
Confidence 8886543
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.70 E-value=3e-16 Score=118.20 Aligned_cols=148 Identities=8% Similarity=0.010 Sum_probs=109.2
Q ss_pred CcccccCCEEEEEcCC------------CeEEEEEcCCCeE---EEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEE
Q 028802 1 MTFAADAMKLLGTSGD------------GTLSVCNLRKNTV---QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d------------~~i~v~d~~~~~~---~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d 65 (203)
++|+|+|++|++++.+ +.|.+||+.+++. +..+.. ...+.+++|+|+++ +++++. .|.+||
T Consensus 97 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~-l~~~~~--~i~~~d 172 (349)
T 1jmx_B 97 FAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDGS-LYVAGP--DIYKMD 172 (349)
T ss_dssp EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTSC-EEEESS--SEEEEC
T ss_pred eEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-CCcccceeECCCCc-EEEccC--cEEEEe
Confidence 4799999999988755 8999999987432 233333 34588899999999 555543 499999
Q ss_pred cCCccccceeeecCCC----------------------------------------------------------------
Q 028802 66 WGYFKDCSDRFVGLSP---------------------------------------------------------------- 81 (203)
Q Consensus 66 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 81 (203)
+.+ +.....+.. ..
T Consensus 173 ~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (349)
T 1jmx_B 173 VKT-GKYTVALPL-RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF 250 (349)
T ss_dssp TTT-CCEEEEECS-TTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEE
T ss_pred CCC-Cceeccccc-cccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccc
Confidence 864 333333321 11
Q ss_pred ----CceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 82 ----NSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 82 ----~~v~~~-~~~-~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
..+..+ ++| ++++++++ ++.|.+||+.+++.+..+... . .+.+++|+|++++|++++.++.|.+||+.++
T Consensus 251 ~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~-~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 251 ADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-H-TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp EECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-S-CCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred ccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-C-CccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 022334 578 99999888 889999999999888777654 2 4778999999999988888999999999887
Q ss_pred ccC
Q 028802 156 LKG 158 (203)
Q Consensus 156 ~~~ 158 (203)
+..
T Consensus 327 ~~~ 329 (349)
T 1jmx_B 327 EKV 329 (349)
T ss_dssp EEE
T ss_pred cee
Confidence 644
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-16 Score=127.92 Aligned_cols=143 Identities=6% Similarity=-0.033 Sum_probs=111.3
Q ss_pred cccccCCE-EEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCC----CeEEEEEcCCccccceee
Q 028802 2 TFAADAMK-LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS----GTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 2 ~~sp~~~~-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d----~~i~v~d~~~~~~~~~~~ 76 (203)
+|+|+|+. +++.+.++.+.+||+.+++.......+. .+++|+|||++|++++.+ +.|++||+.. +. ...+
T Consensus 116 ~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~-g~-~~~l 190 (582)
T 3o4h_A 116 SGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS-GG-LRVF 190 (582)
T ss_dssp EEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTT-CC-CEEE
T ss_pred eeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCC-CC-ceEe
Confidence 68898863 3333444556699999887655443332 789999999999987776 7899999864 23 4466
Q ss_pred ecCCCCceeEE-EeeCCCEEEEEcCCC--cEEEEEccCCceeeeeccCCCcceEEEE--------EeCCCCeEEEEeCCC
Q 028802 77 VGLSPNSVDAL-LKLDEDRVITGSENG--LISLVGILPNRIIQPIAEHSEYPIESLA--------LSHDRKFLGSISHDS 145 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~dg--~v~v~d~~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~l~~~~~d~ 145 (203)
.. +...+..+ |+|+|+.|+++..++ .|++||+.+++.. .+..+.. .+..++ |+|||..+++++.++
T Consensus 191 ~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~g 267 (582)
T 3o4h_A 191 DS-GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSK-DFSSYRPTAITWLGYLPDGRLAVVARREG 267 (582)
T ss_dssp CC-SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCS-HHHHHCCSEEEEEEECTTSCEEEEEEETT
T ss_pred ec-CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCc-ChhhhhhccccceeEcCCCcEEEEEEcCC
Confidence 77 77788888 999999999888888 8999999988877 6666633 555566 999998888899999
Q ss_pred cEEEEeC
Q 028802 146 MLKLWDL 152 (203)
Q Consensus 146 ~i~iwd~ 152 (203)
.+++|++
T Consensus 268 ~~~l~~~ 274 (582)
T 3o4h_A 268 RSAVFID 274 (582)
T ss_dssp EEEEEET
T ss_pred cEEEEEE
Confidence 9999999
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-15 Score=114.43 Aligned_cols=150 Identities=10% Similarity=0.167 Sum_probs=104.4
Q ss_pred CcccccCCEEEEEc-CCCeEEEEEcCCCe-------E------EEeecCCcccEEEEEEeeCCCEEEEec-CCCeEEEEE
Q 028802 1 MTFAADAMKLLGTS-GDGTLSVCNLRKNT-------V------QTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYS 65 (203)
Q Consensus 1 l~~sp~~~~l~~~~-~d~~i~v~d~~~~~-------~------~~~~~~~~~~i~~l~~~~~~~~l~~~~-~d~~i~v~d 65 (203)
++|+|+|++|+++. .++.|.+|++.... + ......+...+..++|+|+++++++++ .++.|.+|+
T Consensus 160 ~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~ 239 (361)
T 3scy_A 160 VRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFR 239 (361)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEE
Confidence 47899999775554 58899999887432 1 111223345678999999999887776 589999999
Q ss_pred cCCcccc--ceeeec--CCCCceeEE-EeeCCCEEEEEcCC--CcEEEEEcc--CCc--eeeeeccCCCcceEEEEEeCC
Q 028802 66 WGYFKDC--SDRFVG--LSPNSVDAL-LKLDEDRVITGSEN--GLISLVGIL--PNR--IIQPIAEHSEYPIESLALSHD 134 (203)
Q Consensus 66 ~~~~~~~--~~~~~~--~~~~~v~~~-~~~~~~~l~~~~~d--g~v~v~d~~--~~~--~~~~~~~~~~~~i~~~~~~~~ 134 (203)
+.. +.. +..+.. .+......+ |+|+|++|+++... +.|.+|++. +++ .+..+.. ...+.+++|+|+
T Consensus 240 ~~~-g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~--g~~~~~~~~spd 316 (361)
T 3scy_A 240 YAD-GMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT--GIHPRNFIITPN 316 (361)
T ss_dssp EET-TEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC--SSCCCEEEECTT
T ss_pred ecC-CceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC--CCCCceEEECCC
Confidence 873 222 222221 022335677 99999998777654 889999985 444 3333433 225788999999
Q ss_pred CCeEEEEe-CCCcEEEEeCC
Q 028802 135 RKFLGSIS-HDSMLKLWDLD 153 (203)
Q Consensus 135 ~~~l~~~~-~d~~i~iwd~~ 153 (203)
|++|++++ .++.|.+|.+.
T Consensus 317 g~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 317 GKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp SCEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEEECCCCCEEEEEEE
Confidence 99998887 67899996553
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.6e-16 Score=128.67 Aligned_cols=149 Identities=11% Similarity=0.045 Sum_probs=111.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCc----cccceee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----KDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~----~~~~~~~ 76 (203)
++|||+ +.++++. ++.|++||+.+++.... ..+...+.+++|+|+|++|+++ .++.|++|++... +......
T Consensus 87 ~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~ 162 (706)
T 2z3z_A 87 TLDAGR-GLVVLFT-QGGLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVT 162 (706)
T ss_dssp EEETTT-TEEEEEE-TTEEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESC
T ss_pred EEECCC-CeEEEEE-CCEEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEec
Confidence 468999 6666554 49999999998876543 3445678889999999999985 6799999999741 3333322
Q ss_pred ecCCCCc--------------eeEE-EeeCCCEEEEEc---------------------------------CCCcEEEEE
Q 028802 77 VGLSPNS--------------VDAL-LKLDEDRVITGS---------------------------------ENGLISLVG 108 (203)
Q Consensus 77 ~~~~~~~--------------v~~~-~~~~~~~l~~~~---------------------------------~dg~v~v~d 108 (203)
.. +... +.++ |+|+|++|++++ .+..|++||
T Consensus 163 ~~-~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d 241 (706)
T 2z3z_A 163 ID-GTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYH 241 (706)
T ss_dssp SC-CBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEE
T ss_pred cC-CCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEE
Confidence 22 2222 3667 999999999987 346799999
Q ss_pred ccCCceeeeec--cCCCcceEEEEEeCCCCeEEEEeCCC-----cEEEEeCCCc
Q 028802 109 ILPNRIIQPIA--EHSEYPIESLALSHDRKFLGSISHDS-----MLKLWDLDDI 155 (203)
Q Consensus 109 ~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~ 155 (203)
+.+++...... .+ ...+.+++|+|||++|++++.++ .|++||+.++
T Consensus 242 ~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g 294 (706)
T 2z3z_A 242 LATGKTVYLQTGEPK-EKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETG 294 (706)
T ss_dssp TTTTEEEECCCCSCT-TCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTC
T ss_pred CCCCceEeeccCCCC-ceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCC
Confidence 99887654443 23 23689999999999999888776 8999999887
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.1e-15 Score=113.10 Aligned_cols=154 Identities=12% Similarity=0.143 Sum_probs=106.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcC-CCeEE--EeecC-CcccEEEEEEeeCCCEEEE-ecCCCeEEEEEcCCc-ccc--
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLR-KNTVQ--TRSEF-SEEELTSVVLMKNGRKVVC-GSQSGTVLLYSWGYF-KDC-- 72 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~-~~~~~--~~~~~-~~~~i~~l~~~~~~~~l~~-~~~d~~i~v~d~~~~-~~~-- 72 (203)
++|+|+|+++++...++.|++|++. ++... ..+.. ....+..++|+|+|++|++ ...++.+.+|++... +..
T Consensus 146 ~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~ 225 (347)
T 3hfq_A 146 TDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQ 225 (347)
T ss_dssp EEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred EEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEE
Confidence 4789999966666778999999998 45432 22222 2346788999999996665 556889999998641 221
Q ss_pred ceeeecCCC------CceeEE-EeeCCCEEEE-EcCCCcEEEEEccC-C--ceeeeeccCCCcceEEEEEeCCCCeEEEE
Q 028802 73 SDRFVGLSP------NSVDAL-LKLDEDRVIT-GSENGLISLVGILP-N--RIIQPIAEHSEYPIESLALSHDRKFLGSI 141 (203)
Q Consensus 73 ~~~~~~~~~------~~v~~~-~~~~~~~l~~-~~~dg~v~v~d~~~-~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 141 (203)
+..+.. .. ..+..+ |+|+|++|++ ...++.|.+|++.. + ..+..+..+.. .+..++|+|+|++|+++
T Consensus 226 ~~~~~~-~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~-~~~~~~~spdg~~l~v~ 303 (347)
T 3hfq_A 226 LGIVKT-IPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGD-FPRDFDLDPTEAFVVVV 303 (347)
T ss_dssp EEEEES-SCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSS-CCCEEEECTTSSEEEEE
T ss_pred eeeeee-cCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCC-CcCeEEECCCCCEEEEE
Confidence 222222 22 346667 9999998855 45588999999863 2 34455555423 57899999999998888
Q ss_pred eC-CCcEEEEeC--CCcc
Q 028802 142 SH-DSMLKLWDL--DDIL 156 (203)
Q Consensus 142 ~~-d~~i~iwd~--~~~~ 156 (203)
+. ++.|.+|++ .++.
T Consensus 304 ~~~~~~v~v~~~d~~tg~ 321 (347)
T 3hfq_A 304 NQNTDNATLYARDLTSGK 321 (347)
T ss_dssp ETTTTEEEEEEECTTTCC
T ss_pred EcCCCcEEEEEEeCCCCe
Confidence 75 489999944 4443
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.70 E-value=9.6e-16 Score=115.44 Aligned_cols=152 Identities=10% Similarity=0.018 Sum_probs=113.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCc-ccEEEEEEeeCCCEEE-EecCCCeEEEEEcCCccccceeeec
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSE-EELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~i~~l~~~~~~~~l~-~~~~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
+++++++.++++++.++.|++||+.+++.+..+..+. ..+..++|+|++++++ +...++.|.+||+.+ +.....+..
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t-~~~~~~~~~ 83 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT-CKNTFHANL 83 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEES
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCC-CcEEEEEEc
Confidence 4678889999999999999999999998887776543 2577899999998665 555689999999975 344444442
Q ss_pred CC-----CCceeEE-EeeCCCEEEEEcCC------------CcEEEEEccCCcee---eeeccCCCcceEEEEEeCCCCe
Q 028802 79 LS-----PNSVDAL-LKLDEDRVITGSEN------------GLISLVGILPNRII---QPIAEHSEYPIESLALSHDRKF 137 (203)
Q Consensus 79 ~~-----~~~v~~~-~~~~~~~l~~~~~d------------g~v~v~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~ 137 (203)
.+ ...+..+ |+|+|+++++++.+ +.|.+||+.+++.. ..+..+ . .+.+++|+|+|+
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~-~~~~~~~s~dg~- 160 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP-R-QVYLMRAADDGS- 160 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC-S-SCCCEEECTTSC-
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC-C-cccceeECCCCc-
Confidence 01 1225667 89999999998865 89999999885433 333333 3 578899999999
Q ss_pred EEEEeCCCcEEEEeCCCcccC
Q 028802 138 LGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 138 l~~~~~d~~i~iwd~~~~~~~ 158 (203)
+++++ +.|.+||+.++...
T Consensus 161 l~~~~--~~i~~~d~~~~~~~ 179 (349)
T 1jmx_B 161 LYVAG--PDIYKMDVKTGKYT 179 (349)
T ss_dssp EEEES--SSEEEECTTTCCEE
T ss_pred EEEcc--CcEEEEeCCCCcee
Confidence 65554 34999999887643
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.69 E-value=5.3e-16 Score=125.19 Aligned_cols=151 Identities=10% Similarity=-0.008 Sum_probs=104.3
Q ss_pred CcccccCCEEEEEcC-CCeEEEEEcCCCeEEEeecCCc-ccEEEEEEeeCCCEEEEecC---CCeEEEEEcCC--ccc--
Q 028802 1 MTFAADAMKLLGTSG-DGTLSVCNLRKNTVQTRSEFSE-EELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGY--FKD-- 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~-~~i~~l~~~~~~~~l~~~~~---d~~i~v~d~~~--~~~-- 71 (203)
++|+|||++||+++. +|++.||++.++.... +..+. ..+..++|+|+ +.+++++. +....+|.+.. .+.
T Consensus 27 ~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~ 104 (582)
T 3o4h_A 27 LQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ 104 (582)
T ss_dssp EEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE
T ss_pred eecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc
Confidence 478999999999876 9999999997665543 33333 46777777776 55554443 33334433321 100
Q ss_pred --------------------------------------cceeeecCCCCceeEE-EeeCCCEEEEEcCC----CcEEEEE
Q 028802 72 --------------------------------------CSDRFVGLSPNSVDAL-LKLDEDRVITGSEN----GLISLVG 108 (203)
Q Consensus 72 --------------------------------------~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d----g~v~v~d 108 (203)
....+.. +.. ..+ |+|+|++|++++.+ +.|++||
T Consensus 105 ~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~-~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d 181 (582)
T 3o4h_A 105 RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR-LPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSN 181 (582)
T ss_dssp ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-ESS--CEEEEEEETTEEEEEEEEETTEEEEEEEE
T ss_pred cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec-CCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEc
Confidence 0111111 111 455 89999999988776 7799999
Q ss_pred ccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCC--cEEEEeCCCcccC
Q 028802 109 ILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS--MLKLWDLDDILKG 158 (203)
Q Consensus 109 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~ 158 (203)
+.+++.. .+..+.. .+..++|+|||++|+++..++ .|++||+.++...
T Consensus 182 ~~~g~~~-~l~~~~~-~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 182 LSSGGLR-VFDSGEG-SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE 231 (582)
T ss_dssp TTTCCCE-EECCSSC-EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred CCCCCce-EeecCCC-ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence 9888765 5666644 789999999999999887888 8999999887654
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-15 Score=113.33 Aligned_cols=145 Identities=14% Similarity=0.057 Sum_probs=113.2
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCcc--cEEEEEEeeCCCEEE-EecCCCeEEEEEcCCccccceeeecCCC---
Q 028802 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE--ELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFVGLSP--- 81 (203)
Q Consensus 8 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~--~i~~l~~~~~~~~l~-~~~~d~~i~v~d~~~~~~~~~~~~~~~~--- 81 (203)
++|++++.++.|++||+.+++.+..+..... .+..++|+|+++.++ ++..++.|.+||+.+ +..+..+.. ..
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~-~~~~~~~~~-~~~~~ 79 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT-GETLGRIDL-STPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT-CCEEEEEEC-CBTTE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCC-CCeEeeEEc-CCccc
Confidence 4788999999999999999988877764332 478899999997664 555678999999975 455554542 21
Q ss_pred --CceeEE-EeeCCCEEEEEc------------CCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCc
Q 028802 82 --NSVDAL-LKLDEDRVITGS------------ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSM 146 (203)
Q Consensus 82 --~~v~~~-~~~~~~~l~~~~------------~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 146 (203)
..+..+ |+|++++++++. .++.|.+||+.+++.+..+... . .+.+++|+|++++|+++ ++.
T Consensus 80 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~-~~~~~~~s~dg~~l~~~--~~~ 155 (337)
T 1pby_B 80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-R-QITMLAWARDGSKLYGL--GRD 155 (337)
T ss_dssp EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-S-SCCCEEECTTSSCEEEE--SSS
T ss_pred ccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC-C-CcceeEECCCCCEEEEe--CCe
Confidence 145667 899999998886 5789999999988887777654 3 57889999999988887 689
Q ss_pred EEEEeCCCcccC
Q 028802 147 LKLWDLDDILKG 158 (203)
Q Consensus 147 i~iwd~~~~~~~ 158 (203)
|++||+.++...
T Consensus 156 i~~~d~~~~~~~ 167 (337)
T 1pby_B 156 LHVMDPEAGTLV 167 (337)
T ss_dssp EEEEETTTTEEE
T ss_pred EEEEECCCCcEe
Confidence 999999887643
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-16 Score=131.52 Aligned_cols=153 Identities=14% Similarity=0.056 Sum_probs=106.9
Q ss_pred CcccccCCEEEEEcC---------CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccc
Q 028802 1 MTFAADAMKLLGTSG---------DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~---------d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 71 (203)
++|||||++|++++. ++.|++||+.+++.+.... ....+..++|+|||+.|+++. ++.|++|++... .
T Consensus 65 ~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g-~ 141 (719)
T 1z68_A 65 YGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGD-P 141 (719)
T ss_dssp EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTS-C
T ss_pred EEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCCCC-C
Confidence 369999999998876 6899999999987631111 124588899999999999885 789999998643 3
Q ss_pred cceee-ecCCCCce-----------------eEE-EeeCCCEEEEEcCCC------------------------------
Q 028802 72 CSDRF-VGLSPNSV-----------------DAL-LKLDEDRVITGSENG------------------------------ 102 (203)
Q Consensus 72 ~~~~~-~~~~~~~v-----------------~~~-~~~~~~~l~~~~~dg------------------------------ 102 (203)
..... .+ +...+ ..+ |+|+|+.|++++.+.
T Consensus 142 ~~~l~~~~-~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~ 220 (719)
T 1z68_A 142 PFQITFNG-RENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAK 220 (719)
T ss_dssp CEECCCCC-BTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSC
T ss_pred cEEEecCC-CcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCC
Confidence 32211 11 11111 367 999999999987542
Q ss_pred ----cEEEEEccCCcee---e-----eeccCCCcceEEEEEeCCCCeEEEEeCC----CcEEEEe----CCCcccC
Q 028802 103 ----LISLVGILPNRII---Q-----PIAEHSEYPIESLALSHDRKFLGSISHD----SMLKLWD----LDDILKG 158 (203)
Q Consensus 103 ----~v~v~d~~~~~~~---~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~iwd----~~~~~~~ 158 (203)
.|++||+.+++.+ . .+..+. ..+..++|+||++++++.... ..|.+|| +.++...
T Consensus 221 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~ 295 (719)
T 1z68_A 221 NPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD-YYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP 295 (719)
T ss_dssp CCEEEEEEEESSCHHHHCCEECCCCHHHHTSC-EEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC
T ss_pred CCeeEEEEEECCCCCccceeEccCCccCCCCc-ceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE
Confidence 7889999877642 1 123453 368999999998776664422 2488899 7666543
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.68 E-value=1e-15 Score=126.96 Aligned_cols=136 Identities=13% Similarity=0.044 Sum_probs=102.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccc-----EEEEEEeeCCCEEEEecCC---------CeEEEEEc
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEE-----LTSVVLMKNGRKVVCGSQS---------GTVLLYSW 66 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-----i~~l~~~~~~~~l~~~~~d---------~~i~v~d~ 66 (203)
++|+|+|++|+++ |++|++|++.+++....+..|... ...+.|||||++|++++.+ +.+.+||+
T Consensus 22 ~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~ 99 (740)
T 4a5s_A 22 LRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL 99 (740)
T ss_dssp EEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred cEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEEC
Confidence 4799999988886 899999999999877777665432 2447899999999988875 56779999
Q ss_pred CCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeee-ccCCCcce-----------------E
Q 028802 67 GYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI-AEHSEYPI-----------------E 127 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~-~~~~~~~i-----------------~ 127 (203)
.+ +. ...+.. +...+..+ |+|+|+.|+.+ .++.|++|++.++...... .++.. .+ .
T Consensus 100 ~~-~~-~~~l~~-~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~-~~~~g~~~~v~~ee~~~~~~ 174 (740)
T 4a5s_A 100 NK-RQ-LITEER-IPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKED-IIYNGITDWVYEEEVFSAYS 174 (740)
T ss_dssp TT-TE-ECCSSC-CCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTT-TEEESBCCHHHHHHTSSSSB
T ss_pred CC-Cc-EEEccc-CCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCcc-ceecCcccccccchhcCCCc
Confidence 75 33 344565 66778888 99999999988 4689999999887655422 22211 12 3
Q ss_pred EEEEeCCCCeEEEEeC
Q 028802 128 SLALSHDRKFLGSISH 143 (203)
Q Consensus 128 ~~~~~~~~~~l~~~~~ 143 (203)
.+.|||||++|+..+.
T Consensus 175 ~~~wSpDg~~la~~~~ 190 (740)
T 4a5s_A 175 ALWWSPNGTFLAYAQF 190 (740)
T ss_dssp CEEECTTSSEEEEEEE
T ss_pred ceEECCCCCEEEEEEE
Confidence 4899999999998763
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.2e-15 Score=123.03 Aligned_cols=154 Identities=11% Similarity=0.020 Sum_probs=113.5
Q ss_pred CcccccCCEEEEEc---------------------------------CCCeEEEEEcCCCeEEEeec--CCcccEEEEEE
Q 028802 1 MTFAADAMKLLGTS---------------------------------GDGTLSVCNLRKNTVQTRSE--FSEEELTSVVL 45 (203)
Q Consensus 1 l~~sp~~~~l~~~~---------------------------------~d~~i~v~d~~~~~~~~~~~--~~~~~i~~l~~ 45 (203)
++|||||++|++++ .+..|++||+.+++...... .+...+.+++|
T Consensus 186 ~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 265 (706)
T 2z3z_A 186 TFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSW 265 (706)
T ss_dssp EEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEE
T ss_pred EEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEE
Confidence 36999999999887 45789999999887654442 45677999999
Q ss_pred eeCCCEEEEecCCC-----eEEEEEcCCccccceeee-cCCCC---ceeEE-Eee--CCCEEEEEcCCCcEEEEEcc-CC
Q 028802 46 MKNGRKVVCGSQSG-----TVLLYSWGYFKDCSDRFV-GLSPN---SVDAL-LKL--DEDRVITGSENGLISLVGIL-PN 112 (203)
Q Consensus 46 ~~~~~~l~~~~~d~-----~i~v~d~~~~~~~~~~~~-~~~~~---~v~~~-~~~--~~~~l~~~~~dg~v~v~d~~-~~ 112 (203)
+|+|+.|++++.++ .|++||+.+. .....+. ..... .+..+ |+| +|++++++..++.+++|.+. ++
T Consensus 266 spdg~~l~~~~~~~~~~~~~v~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~ 344 (706)
T 2z3z_A 266 SPDENILYVAEVNRAQNECKVNAYDAETG-RFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTG 344 (706)
T ss_dssp CTTSSEEEEEEECTTSCEEEEEEEETTTC-CEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTS
T ss_pred ECCCCEEEEEEeCCCCCeeEEEEEECCCC-ceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCC
Confidence 99999999877665 8999998753 2223322 10222 23456 899 99999999999999999876 56
Q ss_pred ceeeeeccCCCcceEE-EEEeCCCCeEEEEeC-CC----cEEEEeCCCcc
Q 028802 113 RIIQPIAEHSEYPIES-LALSHDRKFLGSISH-DS----MLKLWDLDDIL 156 (203)
Q Consensus 113 ~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~-d~----~i~iwd~~~~~ 156 (203)
..+..+..+.. .+.. ++|+|+++.|+.++. ++ .|..|++.++.
T Consensus 345 ~~~~~l~~~~~-~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 345 RLIRQVTKGEW-EVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp CEEEECCCSSS-CEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred CEEEecCCCCe-EEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 67777776633 6766 799999998876654 43 67777876654
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=3.5e-15 Score=113.88 Aligned_cols=151 Identities=9% Similarity=0.093 Sum_probs=106.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcC-CCeEEEeecCC-cccEEEEEEeeCCCE--EEEec-------------CCCeEEE
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLR-KNTVQTRSEFS-EEELTSVVLMKNGRK--VVCGS-------------QSGTVLL 63 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~-~~~~~~~~~~~-~~~i~~l~~~~~~~~--l~~~~-------------~d~~i~v 63 (203)
++|+|+|++|++++.+ .|.+|++. +++........ ...+..++|+|+|++ +++++ .++.+.+
T Consensus 45 ~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v 123 (365)
T 1jof_A 45 MTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNV 123 (365)
T ss_dssp EEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEE
T ss_pred EEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEE
Confidence 4789999999988887 99999997 77664332210 122456889999984 44553 6889999
Q ss_pred EEcCCccccceeee----cCCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEcc-CCcee--eeeccCC-CcceEEEEEeC
Q 028802 64 YSWGYFKDCSDRFV----GLSPNSVDAL-LKLDEDRVITGSE-NGLISLVGIL-PNRII--QPIAEHS-EYPIESLALSH 133 (203)
Q Consensus 64 ~d~~~~~~~~~~~~----~~~~~~v~~~-~~~~~~~l~~~~~-dg~v~v~d~~-~~~~~--~~~~~~~-~~~i~~~~~~~ 133 (203)
|++...+.....+. . +...+..+ |+|+|++++++.. ++.|++|++. +++.. ..+.... ...+..++|+|
T Consensus 124 ~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~sp 202 (365)
T 1jof_A 124 FSVSETGKLEKNVQNYEYQ-ENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP 202 (365)
T ss_dssp EEECTTCCEEEEEEEEECC-TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT
T ss_pred EccCCCCcCcceEeeEEeC-CCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECC
Confidence 99964344433332 1 23457777 9999998887654 6789999998 67643 2333211 23688999999
Q ss_pred CCCeEEEEeC-CCcEEEEeCC
Q 028802 134 DRKFLGSISH-DSMLKLWDLD 153 (203)
Q Consensus 134 ~~~~l~~~~~-d~~i~iwd~~ 153 (203)
+|++|++++. ++.|.+|++.
T Consensus 203 dg~~l~v~~~~~~~v~v~~~~ 223 (365)
T 1jof_A 203 TGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp TSSEEEEEETTTTEEEEEEEC
T ss_pred CCCEEEEEECCCCeEEEEEEe
Confidence 9999988774 7899999765
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=6.6e-14 Score=106.82 Aligned_cols=153 Identities=8% Similarity=0.005 Sum_probs=104.7
Q ss_pred CcccccCCE--EEEEc-------------CCCeEEEEEcC-CCeEEEeec----CCcccEEEEEEeeCCCEEEEecC-CC
Q 028802 1 MTFAADAMK--LLGTS-------------GDGTLSVCNLR-KNTVQTRSE----FSEEELTSVVLMKNGRKVVCGSQ-SG 59 (203)
Q Consensus 1 l~~sp~~~~--l~~~~-------------~d~~i~v~d~~-~~~~~~~~~----~~~~~i~~l~~~~~~~~l~~~~~-d~ 59 (203)
++|+|+|++ ++++. .++.+.+|++. .++....+. .+...+.+++|+|+|++|++++. ++
T Consensus 88 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~ 167 (365)
T 1jof_A 88 NDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTAN 167 (365)
T ss_dssp GCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred EEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCC
Confidence 478999994 45553 68999999997 455443333 24567899999999998887654 67
Q ss_pred eEEEEEcCCcccc--ceeeec-CCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEcc--CCcee---e---eeccCC-C-c
Q 028802 60 TVLLYSWGYFKDC--SDRFVG-LSPNSVDAL-LKLDEDRVITGSE-NGLISLVGIL--PNRII---Q---PIAEHS-E-Y 124 (203)
Q Consensus 60 ~i~v~d~~~~~~~--~~~~~~-~~~~~v~~~-~~~~~~~l~~~~~-dg~v~v~d~~--~~~~~---~---~~~~~~-~-~ 124 (203)
.|++|++...+.. +..+.. .+...+..+ |+|+|+++++++. ++.|.+|++. +++.. . .+.... . .
T Consensus 168 ~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 247 (365)
T 1jof_A 168 KLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRD 247 (365)
T ss_dssp EEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBC
T ss_pred EEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcc
Confidence 9999999621222 222321 024457777 9999999988775 6889999765 45542 1 222110 1 1
Q ss_pred -------ceEEEE-EeCCCCeEEEEeCC-C-----cEEEEeCC
Q 028802 125 -------PIESLA-LSHDRKFLGSISHD-S-----MLKLWDLD 153 (203)
Q Consensus 125 -------~i~~~~-~~~~~~~l~~~~~d-~-----~i~iwd~~ 153 (203)
.+..++ |+|||++|+++..+ . .|.+|++.
T Consensus 248 ~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~ 290 (365)
T 1jof_A 248 PETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR 290 (365)
T ss_dssp TTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred cccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEEC
Confidence 378899 99999998776643 2 89999986
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.63 E-value=9.9e-14 Score=105.40 Aligned_cols=153 Identities=14% Similarity=0.167 Sum_probs=103.8
Q ss_pred CcccccCCEEEEEcCC----CeEEEEEcCC--CeE--EEeecCCcccEEEEEEeeCCCEEEEec-CCCeEEEEEcCCccc
Q 028802 1 MTFAADAMKLLGTSGD----GTLSVCNLRK--NTV--QTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d----~~i~v~d~~~--~~~--~~~~~~~~~~i~~l~~~~~~~~l~~~~-~d~~i~v~d~~~~~~ 71 (203)
|+|+|+|++|++++.+ +.|.+|++.. +.. +.....+......+++ ++++|++++ .++.+.+|++...+.
T Consensus 55 l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~ 132 (361)
T 3scy_A 55 LIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGA 132 (361)
T ss_dssp EEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSC
T ss_pred EEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCc
Confidence 4799999999988875 7999998865 433 3334444556677777 788777666 578999999964332
Q ss_pred ccee---ee--c-------CCCCceeEE-EeeCCCEEEEEc-CCCcEEEEEccCCce------e------eeeccCCCcc
Q 028802 72 CSDR---FV--G-------LSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRI------I------QPIAEHSEYP 125 (203)
Q Consensus 72 ~~~~---~~--~-------~~~~~v~~~-~~~~~~~l~~~~-~dg~v~v~d~~~~~~------~------~~~~~~~~~~ 125 (203)
.... +. + .+...+.++ |+|+|+++++++ .++.|.+|++..... + ..+.......
T Consensus 133 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 212 (361)
T 3scy_A 133 LLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSG 212 (361)
T ss_dssp BCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCC
T ss_pred CcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCC
Confidence 2111 11 1 001223667 899999776655 478999999875331 1 1222222336
Q ss_pred eEEEEEeCCCCeEEEEe-CCCcEEEEeCCCc
Q 028802 126 IESLALSHDRKFLGSIS-HDSMLKLWDLDDI 155 (203)
Q Consensus 126 i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~ 155 (203)
+.+++|+|+|++|++++ .++.|.+|++.++
T Consensus 213 ~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g 243 (361)
T 3scy_A 213 PRHLIFNSDGKFAYLINEIGGTVIAFRYADG 243 (361)
T ss_dssp EEEEEECTTSSEEEEEETTTCEEEEEEEETT
T ss_pred CeEEEEcCCCCEEEEEcCCCCeEEEEEecCC
Confidence 78999999999888777 6899999998755
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.1e-14 Score=108.97 Aligned_cols=151 Identities=11% Similarity=0.034 Sum_probs=111.5
Q ss_pred cccccCCEEEEEcC-CC--eEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028802 2 TFAADAMKLLGTSG-DG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
+|||||++|++++. ++ .|++||+.+++.......+...+..+.|+|+++.|++++.++.|++||+.. +.....+..
T Consensus 42 ~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~-g~~~~~~~~ 120 (388)
T 3pe7_A 42 CFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLAT-LEENVVYQV 120 (388)
T ss_dssp CBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTT-CCEEEEEEC
T ss_pred cCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCC-Ccceeeeec
Confidence 69999999988876 66 489999999888776666655555678999999999999999999999975 344333443
Q ss_pred CCCCceeEE---EeeCCCEEEEE----------------------cCCCcEEEEEccCCceeeeeccCCCcceEEEEEeC
Q 028802 79 LSPNSVDAL---LKLDEDRVITG----------------------SENGLISLVGILPNRIIQPIAEHSEYPIESLALSH 133 (203)
Q Consensus 79 ~~~~~v~~~---~~~~~~~l~~~----------------------~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~ 133 (203)
+...+... ++|++.+++.. ..+..|++||+.+++..... .+.. .+..+.|+|
T Consensus 121 -~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~-~~~~~~~sp 197 (388)
T 3pe7_A 121 -PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL-QENQ-WLGHPIYRP 197 (388)
T ss_dssp -CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE-EESS-CEEEEEEET
T ss_pred -hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEee-cCCc-cccccEECC
Confidence 44433322 48899988742 23467999999988765444 3323 688999999
Q ss_pred -CCCeEEEEeCC------CcEEEEeCCCcc
Q 028802 134 -DRKFLGSISHD------SMLKLWDLDDIL 156 (203)
Q Consensus 134 -~~~~l~~~~~d------~~i~iwd~~~~~ 156 (203)
+|+.|+....+ ..|.++++.+..
T Consensus 198 ~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~ 227 (388)
T 3pe7_A 198 YDDSTVAFCHEGPHDLVDARMWLINEDGTN 227 (388)
T ss_dssp TEEEEEEEEECSCTTTSSCSEEEEETTSCC
T ss_pred CCCCEEEEEEecCCCCCcceEEEEeCCCCc
Confidence 99998877653 378888876654
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=9.3e-15 Score=121.18 Aligned_cols=150 Identities=11% Similarity=0.069 Sum_probs=106.8
Q ss_pred cccccCCEEEEEcCC---------CeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc
Q 028802 2 TFAADAMKLLGTSGD---------GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC 72 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d---------~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 72 (203)
+|||||++|++++.+ +.+++||+.+++.. .+..+...+..++|||||+.|+.+. ++.|++|++... ..
T Consensus 68 ~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~-~~ 144 (740)
T 4a5s_A 68 SISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNL-PS 144 (740)
T ss_dssp EECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTS-CC
T ss_pred EECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCC-ce
Confidence 579999999998775 56779999998764 4666777899999999999998874 689999998643 32
Q ss_pred ce-eeecCCCCce-----------------eEE-EeeCCCEEEEEcCCC-------------------------------
Q 028802 73 SD-RFVGLSPNSV-----------------DAL-LKLDEDRVITGSENG------------------------------- 102 (203)
Q Consensus 73 ~~-~~~~~~~~~v-----------------~~~-~~~~~~~l~~~~~dg------------------------------- 102 (203)
.+ +..+ +...+ ..+ |+|||+.|++++.|.
T Consensus 145 ~~lt~~g-~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~ 223 (740)
T 4a5s_A 145 YRITWTG-KEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGA 223 (740)
T ss_dssp EECCSCC-BTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTS
T ss_pred EEEcCCC-CccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcC
Confidence 22 1112 21111 236 899999999875321
Q ss_pred -----cEEEEEccC---Cc--eeeeecc------CCCcceEEEEEeCCCCeEEEEeC----CCcEEEEeCCCcc
Q 028802 103 -----LISLVGILP---NR--IIQPIAE------HSEYPIESLALSHDRKFLGSISH----DSMLKLWDLDDIL 156 (203)
Q Consensus 103 -----~v~v~d~~~---~~--~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~ 156 (203)
.|++||+.+ +. ....+.. + ...+..++|+|||+.++.... +..|.+||+.++.
T Consensus 224 ~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 224 VNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIG-DHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp CCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTS-CEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred cCCeeEEEEEECCCCCCCCcceEEEecCCccCCCC-CeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 478899888 63 1222322 4 336889999999997665432 3369999998876
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.61 E-value=7.3e-15 Score=120.07 Aligned_cols=152 Identities=12% Similarity=0.032 Sum_probs=110.3
Q ss_pred CcccccCCEEEEEcCC----------CeEEEEEcCC------CeEEEeec-CCcccEEEEEEeeCCCEEEEecCC-----
Q 028802 1 MTFAADAMKLLGTSGD----------GTLSVCNLRK------NTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQS----- 58 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d----------~~i~v~d~~~------~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d----- 58 (203)
++|||||+.|++++.+ ..|++|++.+ +.. ..+. .+...+..++|+|||++|+.++.+
T Consensus 135 ~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~ 213 (662)
T 3azo_A 135 PVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMP 213 (662)
T ss_dssp EEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCT
T ss_pred cEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCC
Confidence 3799999999988876 5899999987 554 3444 555678889999999999887754
Q ss_pred ---CeEEEEEcCCcc---ccceeeecCCCCceeEE-EeeCCCEEEEEcCCC--cEEEEEccCCceeeeeccCCCc-----
Q 028802 59 ---GTVLLYSWGYFK---DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENG--LISLVGILPNRIIQPIAEHSEY----- 124 (203)
Q Consensus 59 ---~~i~v~d~~~~~---~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg--~v~v~d~~~~~~~~~~~~~~~~----- 124 (203)
..|++||+...+ ........ +...+..+ |+|+|++++++..++ .|++|++.+++.......+...
T Consensus 214 ~~~~~i~~~d~~~~g~~~~~~~l~~~-~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w 292 (662)
T 3azo_A 214 WEGTELKTARVTEDGRFADTRTLLGG-PEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLW 292 (662)
T ss_dssp TTCEEEEEEEECTTSCEEEEEEEEEE-TTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCC
T ss_pred CCCcEEEEEEECCCCcccccEEeCCC-CCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccc
Confidence 379999997323 23333333 45677888 999999777777777 6777777667655444333211
Q ss_pred --ceEEEEEeCCCCeEEEEeCCCcEEEE--eCCCc
Q 028802 125 --PIESLALSHDRKFLGSISHDSMLKLW--DLDDI 155 (203)
Q Consensus 125 --~i~~~~~~~~~~~l~~~~~d~~i~iw--d~~~~ 155 (203)
.+..++|+|++++++++.. +.++|| |+.++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~ 326 (662)
T 3azo_A 293 TPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG 326 (662)
T ss_dssp STTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT
T ss_pred cccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC
Confidence 1467889999999999888 998888 55544
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=4e-13 Score=98.85 Aligned_cols=150 Identities=11% Similarity=0.132 Sum_probs=111.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeec--CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
|+++|+|+++++...++.|.+|+.. ++.+..+. .+...+..++++++++++++...++.|++|+.. +..+..+..
T Consensus 126 i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~~~~ 202 (286)
T 1q7f_A 126 VTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE--GQYLRQIGG 202 (286)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT--CCEEEEESC
T ss_pred EEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC--CCEEEEEcc
Confidence 4678999988887788999999964 44544443 344568999999999988887788999999974 344455543
Q ss_pred CC--CCceeEE-EeeCCCEEEEEcCCC-cEEEEEccCCceeeeeccCCC-cceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 79 LS--PNSVDAL-LKLDEDRVITGSENG-LISLVGILPNRIIQPIAEHSE-YPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 79 ~~--~~~v~~~-~~~~~~~l~~~~~dg-~v~v~d~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
. ...+..+ ++++|+++++...++ .|.+|+. .++.+..+..+.. ..+.+++++|+|+.+++ +.++.|++|++.
T Consensus 203 -~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~ 279 (286)
T 1q7f_A 203 -EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYV 279 (286)
T ss_dssp -TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECS
T ss_pred -CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcc
Confidence 2 2456777 899999888887775 9999995 4666666655422 14779999999987666 579999999986
Q ss_pred Ccc
Q 028802 154 DIL 156 (203)
Q Consensus 154 ~~~ 156 (203)
...
T Consensus 280 ~~~ 282 (286)
T 1q7f_A 280 QLA 282 (286)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-13 Score=105.27 Aligned_cols=153 Identities=12% Similarity=0.013 Sum_probs=108.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEE--EeeCCCEEEEe----------------------c
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVV--LMKNGRKVVCG----------------------S 56 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~--~~~~~~~l~~~----------------------~ 56 (203)
++|||+|+.|++++.++.|++||+.+++.......+...+.... ++|++.+++.. .
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T 3pe7_A 86 GFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTK 165 (388)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred eEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccC
Confidence 36999999999999999999999999877665555555554444 47899888742 2
Q ss_pred CCCeEEEEEcCCccccceeeecCCCCceeEE-Eee-CCCEEEEEcCC------CcEEEEEccCCceeeeeccCCC-cceE
Q 028802 57 QSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKL-DEDRVITGSEN------GLISLVGILPNRIIQPIAEHSE-YPIE 127 (203)
Q Consensus 57 ~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d------g~v~v~d~~~~~~~~~~~~~~~-~~i~ 127 (203)
.+..|.+||+.+ +. ...+.. +...+..+ |+| +|+.|+.+... ..|.++++..+... .+..+.. ..+.
T Consensus 166 ~~~~l~~~d~~~-g~-~~~l~~-~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~ 241 (388)
T 3pe7_A 166 PCCRLMRVDLKT-GE-STVILQ-ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCT 241 (388)
T ss_dssp CCEEEEEEETTT-CC-EEEEEE-ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEE
T ss_pred CcceEEEEECCC-Cc-eEEeec-CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccc
Confidence 346799999874 33 344545 56667777 999 99998877653 36888887655443 3433322 2577
Q ss_pred EEEEeCCCCeEEEEeC-CC----cEEEEeCCCccc
Q 028802 128 SLALSHDRKFLGSISH-DS----MLKLWDLDDILK 157 (203)
Q Consensus 128 ~~~~~~~~~~l~~~~~-d~----~i~iwd~~~~~~ 157 (203)
.++|+|||+.|+..+. ++ .|++||+.++..
T Consensus 242 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (388)
T 3pe7_A 242 HEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN 276 (388)
T ss_dssp EEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE
T ss_pred cceECCCCCEEEEEecCCCCCcceEEEEecCCCce
Confidence 8899999998865542 22 399999988753
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.58 E-value=7.1e-14 Score=114.26 Aligned_cols=150 Identities=11% Similarity=-0.012 Sum_probs=107.1
Q ss_pred cccCCE-EEEEcC-CCeEEEEEcC--C-CeEEEeecC-----CcccEEEEEEeeCCCEEEEecCC----------CeEEE
Q 028802 4 AADAMK-LLGTSG-DGTLSVCNLR--K-NTVQTRSEF-----SEEELTSVVLMKNGRKVVCGSQS----------GTVLL 63 (203)
Q Consensus 4 sp~~~~-l~~~~~-d~~i~v~d~~--~-~~~~~~~~~-----~~~~i~~l~~~~~~~~l~~~~~d----------~~i~v 63 (203)
||||+. |+.++. +..|+++++. + +. ...+.. +...+..++|+|||+.|++++.+ ..|++
T Consensus 87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~ 165 (662)
T 3azo_A 87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAA 165 (662)
T ss_dssp CSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEE
T ss_pred ecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEE
Confidence 499998 776654 5678888876 3 43 344544 56778999999999999988876 58999
Q ss_pred EEcCCcc----ccceeee-cCCCCceeEE-EeeCCCEEEEEcCC--------CcEEEEEcc-CC---ceeeeeccCCCcc
Q 028802 64 YSWGYFK----DCSDRFV-GLSPNSVDAL-LKLDEDRVITGSEN--------GLISLVGIL-PN---RIIQPIAEHSEYP 125 (203)
Q Consensus 64 ~d~~~~~----~~~~~~~-~~~~~~v~~~-~~~~~~~l~~~~~d--------g~v~v~d~~-~~---~~~~~~~~~~~~~ 125 (203)
||+.... .....+. . +...+..+ |+|+|++|++++.+ ..|++||+. ++ +.......+ ...
T Consensus 166 ~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~-~~~ 243 (662)
T 3azo_A 166 VPLDGSAAADRSAVRELSDD-AHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP-EEA 243 (662)
T ss_dssp EETTSTTTTCGGGSEESSCS-CSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET-TBC
T ss_pred EECCCCccccCCceeEEEec-CCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC-Cce
Confidence 9986410 2334444 4 55566666 99999999988755 379999998 56 444333443 337
Q ss_pred eEEEEEeCCCCeEEEEeCCC--cEEEEeCCCcc
Q 028802 126 IESLALSHDRKFLGSISHDS--MLKLWDLDDIL 156 (203)
Q Consensus 126 i~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~ 156 (203)
+..+.|+|||++++++..++ .|.+|++.++.
T Consensus 244 ~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~ 276 (662)
T 3azo_A 244 IAQAEWAPDGSLIVATDRTGWWNLHRVDPATGA 276 (662)
T ss_dssp EEEEEECTTSCEEEEECTTSSCEEEEECTTTCC
T ss_pred EcceEECCCCeEEEEECCCCCeEEEEEECCCCc
Confidence 89999999999777777777 67777765554
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=7.9e-13 Score=99.52 Aligned_cols=154 Identities=11% Similarity=0.009 Sum_probs=114.4
Q ss_pred CcccccCCEEEEEcCC------------------------CeEEEEEcCCCeEEEeec-CCcccEEEEEEeeCCCEEEEe
Q 028802 1 MTFAADAMKLLGTSGD------------------------GTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCG 55 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d------------------------~~i~v~d~~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~ 55 (203)
|+++|+|+++++...+ +.|.+||..+++.+..+. .+-..+..++++|+++++++.
T Consensus 29 va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d 108 (329)
T 3fvz_A 29 VALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTD 108 (329)
T ss_dssp EEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEE
T ss_pred EEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEE
Confidence 5789999988887776 479999998888766554 344578899999999988888
Q ss_pred cCCCeEEEEEcCCccccceeee---------cCCCCceeEE-Eee-CCCEEEEEc-CCCcEEEEEccCCceeeeeccCCC
Q 028802 56 SQSGTVLLYSWGYFKDCSDRFV---------GLSPNSVDAL-LKL-DEDRVITGS-ENGLISLVGILPNRIIQPIAEHSE 123 (203)
Q Consensus 56 ~~d~~i~v~d~~~~~~~~~~~~---------~~~~~~v~~~-~~~-~~~~l~~~~-~dg~v~v~d~~~~~~~~~~~~~~~ 123 (203)
..++.|++|+.......+..+. . +...+..+ ++| ++.++++.+ .++.|++|+ ..+..+..+.....
T Consensus 109 ~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~-~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~ 186 (329)
T 3fvz_A 109 VALHQVFKLDPHSKEGPLLILGRSMQPGSDQN-HFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESS 186 (329)
T ss_dssp TTTTEEEEECTTCSSCCSEEESBTTBCCCSTT-CCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECC
T ss_pred CCCCEEEEEeCCCCeEEEEEecccCCCCCCcc-ccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCC
Confidence 8899999999753211344442 2 23356777 899 788888876 689999999 56777666642211
Q ss_pred ---------cceEEEEEeCC-CCeEEEEeCCCcEEEEeCCCcc
Q 028802 124 ---------YPIESLALSHD-RKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 124 ---------~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
.....++++|+ +..+++...++.|++|+..++.
T Consensus 187 ~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~ 229 (329)
T 3fvz_A 187 GSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE 229 (329)
T ss_dssp SSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc
Confidence 13789999998 6666777788999999998544
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.9e-13 Score=111.71 Aligned_cols=153 Identities=8% Similarity=-0.016 Sum_probs=105.8
Q ss_pred CcccccCCEEEEEcCCC-----eEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCe---------------
Q 028802 1 MTFAADAMKLLGTSGDG-----TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT--------------- 60 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~-----~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~--------------- 60 (203)
++|||||++|+.+..++ .|++||+.+++.+..... ...+..++|+|||+.|+.++.++.
T Consensus 130 ~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~ 208 (710)
T 2xdw_A 130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQ 208 (710)
T ss_dssp EEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCC
T ss_pred EEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-CcccceEEEEeCCCEEEEEEECCccccccccccccCCCC
Confidence 36999999998775433 899999999877653222 223667999999999998887655
Q ss_pred -EEEEEcCCcccc-ceeeec-CCCCceeEE-EeeCCCEEEEEcC-----CCcEEEEEccC------Cc-eeeeeccCCCc
Q 028802 61 -VLLYSWGYFKDC-SDRFVG-LSPNSVDAL-LKLDEDRVITGSE-----NGLISLVGILP------NR-IIQPIAEHSEY 124 (203)
Q Consensus 61 -i~v~d~~~~~~~-~~~~~~-~~~~~v~~~-~~~~~~~l~~~~~-----dg~v~v~d~~~------~~-~~~~~~~~~~~ 124 (203)
|++|++.+.... ...+.. .+...+..+ |+|+|++|+..+. +..|++||+.+ +. ....+..+..
T Consensus 209 ~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~- 287 (710)
T 2xdw_A 209 KLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFE- 287 (710)
T ss_dssp EEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSS-
T ss_pred EEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCC-
Confidence 999999753221 111222 023335566 8999999988765 56899999986 43 3455555534
Q ss_pred ceEEEEEeCCCCeEEEEeCC----CcEEEEeCCCcc
Q 028802 125 PIESLALSHDRKFLGSISHD----SMLKLWDLDDIL 156 (203)
Q Consensus 125 ~i~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~ 156 (203)
.+.. .|+|+|..|+..+.. ..|.+|++.++.
T Consensus 288 ~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 322 (710)
T 2xdw_A 288 GEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPE 322 (710)
T ss_dssp SCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred cEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence 4443 588999988766643 369999998763
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.7e-14 Score=106.52 Aligned_cols=151 Identities=9% Similarity=-0.060 Sum_probs=102.6
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEE-------------------EEEeeCCCEEEEe-----cC
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTS-------------------VVLMKNGRKVVCG-----SQ 57 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~-------------------l~~~~~~~~l~~~-----~~ 57 (203)
.|||+|++|++++.++.|++|++.+++.......+...... +.|+|+++.++.. ..
T Consensus 87 ~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~ 166 (396)
T 3c5m_A 87 FISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNP 166 (396)
T ss_dssp EECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCC
T ss_pred eECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCC
Confidence 58999999999998899999999888665544433332222 2456666665543 34
Q ss_pred CCeEEEEEcCCccccceeeecCCCCceeEE-Eee-CCCEEEEEcCC------CcEEEEEccCCceeeeeccCC-CcceEE
Q 028802 58 SGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKL-DEDRVITGSEN------GLISLVGILPNRIIQPIAEHS-EYPIES 128 (203)
Q Consensus 58 d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d------g~v~v~d~~~~~~~~~~~~~~-~~~i~~ 128 (203)
+..|++||+.. +.. ..+.. +...+..+ |+| ++..|+..+.+ ..|.+|++..+....... +. ...+..
T Consensus 167 ~~~l~~~d~~~-g~~-~~~~~-~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~ 242 (396)
T 3c5m_A 167 TCRLIKVDIET-GEL-EVIHQ-DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE-HAEGESCTH 242 (396)
T ss_dssp CEEEEEEETTT-CCE-EEEEE-ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC-CCTTEEEEE
T ss_pred cceEEEEECCC-CcE-Eeecc-CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec-cCCCccccc
Confidence 56899999864 333 33334 56667777 899 78877766543 368889987655433333 31 225788
Q ss_pred EEEeCCCCeEEEEeCC-----CcEEEEeCCCcc
Q 028802 129 LALSHDRKFLGSISHD-----SMLKLWDLDDIL 156 (203)
Q Consensus 129 ~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~ 156 (203)
++|+|+|++|+..+.+ +.|++||+.++.
T Consensus 243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~ 275 (396)
T 3c5m_A 243 EFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE 275 (396)
T ss_dssp EEECTTSSCEEEEEEETTTCCEEEEEECTTTCC
T ss_pred eEECCCCCEEEEEecCCCCccceEEEEECCCCC
Confidence 9999999988776543 449999998764
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.50 E-value=1.9e-12 Score=98.71 Aligned_cols=64 Identities=11% Similarity=0.195 Sum_probs=55.4
Q ss_pred EeeCCCEEEEEcC-----------CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 88 LKLDEDRVITGSE-----------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 88 ~~~~~~~l~~~~~-----------dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
++|+++.++++.. .+.|.+||+.+++.+..+..+. +.+++|+|+|++|++++. +.|.+||+.++
T Consensus 261 ~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~---p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 261 LHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD---ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp EETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT---CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred EecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC---eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 7899888887643 3479999999999999998773 789999999999998886 99999999988
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-12 Score=98.77 Aligned_cols=151 Identities=11% Similarity=0.070 Sum_probs=108.9
Q ss_pred Ccccc-cCCEEEEEc-CCCeEEEEEcCCCeEEEeecC----------CcccEEEEEEeeC-CCEEEEecCCCeEEEEEcC
Q 028802 1 MTFAA-DAMKLLGTS-GDGTLSVCNLRKNTVQTRSEF----------SEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 1 l~~sp-~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~----------~~~~i~~l~~~~~-~~~l~~~~~d~~i~v~d~~ 67 (203)
|+|+| ++.++++.+ .++.|++|+ .++..+..+.. +-.....++++|+ +.++++...++.|++|+..
T Consensus 148 ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~ 226 (329)
T 3fvz_A 148 VAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD 226 (329)
T ss_dssp EEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC
Confidence 47888 788777776 689999999 55666665532 2234789999998 6777777788999999986
Q ss_pred Cccccceeeec-CCCCceeEE-Eee------CCCEEEEEcCCCcEEEEEccCCceeeeec---cCCCcceEEEEEeCCCC
Q 028802 68 YFKDCSDRFVG-LSPNSVDAL-LKL------DEDRVITGSENGLISLVGILPNRIIQPIA---EHSEYPIESLALSHDRK 136 (203)
Q Consensus 68 ~~~~~~~~~~~-~~~~~v~~~-~~~------~~~~l~~~~~dg~v~v~d~~~~~~~~~~~---~~~~~~i~~~~~~~~~~ 136 (203)
+ +..+..+.. .+...+..+ ++| ++...++......|++|++.+++.+..+. .+.. .+..++++|+|.
T Consensus 227 ~-G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~-~p~~ia~~~dG~ 304 (329)
T 3fvz_A 227 T-KEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFD-MPHDIVASEDGT 304 (329)
T ss_dssp T-CCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCS-SEEEEEECTTSE
T ss_pred C-CcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccC-CeeEEEECCCCC
Confidence 3 455555532 034456677 777 33322223345589999999999888773 3323 689999999997
Q ss_pred eEEEEeCCCcEEEEeCCC
Q 028802 137 FLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 137 ~l~~~~~d~~i~iwd~~~ 154 (203)
.+++...++.|++|++..
T Consensus 305 lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 305 VYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEESSSCCEEEEEEEE
T ss_pred EEEEECCCCEEEEEeCCc
Confidence 778888899999999864
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.48 E-value=5.7e-12 Score=94.58 Aligned_cols=150 Identities=17% Similarity=0.163 Sum_probs=106.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCC----CeEEEEEcCCccccceee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS----GTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d----~~i~v~d~~~~~~~~~~~ 76 (203)
++|+|+|++++++..++.|++|+..+++.......+...+.+++++|+++++++...+ +.|.+||... +.....+
T Consensus 50 ~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~-~~~~~~~ 128 (333)
T 2dg1_A 50 LNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG-DNLQDII 128 (333)
T ss_dssp EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS-CSCEEEE
T ss_pred cEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCC-CEEEEEE
Confidence 3688999988888888999999998877655443456779999999999988877666 6899999864 2222122
Q ss_pred e--cCCCCceeEE-EeeCCCEEEEEcC------CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEE-eCCCc
Q 028802 77 V--GLSPNSVDAL-LKLDEDRVITGSE------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSI-SHDSM 146 (203)
Q Consensus 77 ~--~~~~~~v~~~-~~~~~~~l~~~~~------dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~ 146 (203)
. . ....+..+ ++|+|.++++... .+.|..++..+++........ . .+..++|+|++++|+.+ ..++.
T Consensus 129 ~~~~-~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~-~~~~i~~~~dg~~l~v~~~~~~~ 205 (333)
T 2dg1_A 129 EDLS-TAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNI-S-VANGIALSTDEKVLWVTETTANR 205 (333)
T ss_dssp CSSS-SCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEE-S-SEEEEEECTTSSEEEEEEGGGTE
T ss_pred ccCc-cCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCC-C-cccceEECCCCCEEEEEeCCCCe
Confidence 2 2 23457777 8999988776653 355777776555443322222 2 57889999999876544 46789
Q ss_pred EEEEeCCC
Q 028802 147 LKLWDLDD 154 (203)
Q Consensus 147 i~iwd~~~ 154 (203)
|.+|++.+
T Consensus 206 i~~~d~~~ 213 (333)
T 2dg1_A 206 LHRIALED 213 (333)
T ss_dssp EEEEEECT
T ss_pred EEEEEecC
Confidence 99999853
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.47 E-value=6.4e-13 Score=101.75 Aligned_cols=139 Identities=10% Similarity=0.108 Sum_probs=104.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe-----------EEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCc
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT-----------VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~-----------~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~ 69 (203)
|++++...++++|+.+ .+.+|++.... ....+ .+.. |+.++| ++.+|+++ .++.|++||+...
T Consensus 43 Lais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl 116 (388)
T 1xip_A 43 LDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEEL 116 (388)
T ss_dssp EEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSST
T ss_pred EEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhh
Confidence 4688889999999886 56669865322 11122 2445 999999 89999998 8899999999754
Q ss_pred cccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEE
Q 028802 70 KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLK 148 (203)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 148 (203)
. ....... +...+..+ +.+. .+++++.+|.|.+||+..+.... + .. .|++++|+|+| ++.+..||.|+
T Consensus 117 ~-~~~~~~~-~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-~---~~-~Vs~v~WSpkG--~~vg~~dg~i~ 185 (388)
T 1xip_A 117 S-EFRTVTS-FEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-L---AQ-NVTSFDVTNSQ--LAVLLKDRSFQ 185 (388)
T ss_dssp T-CEEEEEE-CSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-E---EE-SEEEEEECSSE--EEEEETTSCEE
T ss_pred h-ccCccce-eecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-c---cC-CceEEEEcCCc--eEEEEcCCcEE
Confidence 3 3344555 66667776 4332 38888999999999999877653 2 12 69999999999 67888999999
Q ss_pred EEeCCCcc
Q 028802 149 LWDLDDIL 156 (203)
Q Consensus 149 iwd~~~~~ 156 (203)
+|+..+..
T Consensus 186 ~~~~~~~~ 193 (388)
T 1xip_A 186 SFAWRNGE 193 (388)
T ss_dssp EEEEETTE
T ss_pred EEcCCCcc
Confidence 99887766
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=9.4e-12 Score=102.75 Aligned_cols=155 Identities=11% Similarity=0.010 Sum_probs=109.6
Q ss_pred CcccccCCEEEEEcCCCe----------------EEEEEcCCCe----EEEeecCCcccEEEEEEeeCCCEEEEecC---
Q 028802 1 MTFAADAMKLLGTSGDGT----------------LSVCNLRKNT----VQTRSEFSEEELTSVVLMKNGRKVVCGSQ--- 57 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~----------------i~v~d~~~~~----~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--- 57 (203)
++|+|||+.|++++.++. |++|++.++. ++.....+...+..+.|+|+|++|+.++.
T Consensus 176 ~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~ 255 (710)
T 2xdw_A 176 MAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGC 255 (710)
T ss_dssp EEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSS
T ss_pred EEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccC
Confidence 479999999999887765 9999998764 22233334556789999999999887664
Q ss_pred --CCeEEEEEcCC------ccccceeeecCCCCceeEEEeeCCCEEEEEcCC----CcEEEEEccCCce--eeeeccCCC
Q 028802 58 --SGTVLLYSWGY------FKDCSDRFVGLSPNSVDALLKLDEDRVITGSEN----GLISLVGILPNRI--IQPIAEHSE 123 (203)
Q Consensus 58 --d~~i~v~d~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d----g~v~v~d~~~~~~--~~~~~~~~~ 123 (203)
+..|++||+.. .......+.. +...+...|+|+|..|+..+.. +.|.+|++.++.. ...+..+..
T Consensus 256 ~~~~~l~~~d~~~~~~~~~~~~~~~~l~~-~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 334 (710)
T 2xdw_A 256 DPVNRLWYCDLQQESNGITGILKWVKLID-NFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHE 334 (710)
T ss_dssp SSCCEEEEEEGGGSSSSSCSSCCCEEEEC-SSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS
T ss_pred CCccEEEEEECcccccccCCccceEEeeC-CCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCC
Confidence 56899999864 2224556666 6666655689999988877653 3599999987642 234444422
Q ss_pred -cceEEEEEeCCCCeEEEEeCCCc--EEEEeCCCcc
Q 028802 124 -YPIESLALSHDRKFLGSISHDSM--LKLWDLDDIL 156 (203)
Q Consensus 124 -~~i~~~~~~~~~~~l~~~~~d~~--i~iwd~~~~~ 156 (203)
..+..++|++++.++++...++. |.+|++.++.
T Consensus 335 ~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~ 370 (710)
T 2xdw_A 335 KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA 370 (710)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC
T ss_pred CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCC
Confidence 25788999977777788887874 6667774443
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.45 E-value=6.5e-13 Score=101.62 Aligned_cols=152 Identities=10% Similarity=-0.026 Sum_probs=102.4
Q ss_pred CcccccCCEEEEEcC---CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee
Q 028802 1 MTFAADAMKLLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 77 (203)
++|||+|++|+.+.. +..|++|++.+++.......+......+.|+|+|++|++++.++.|++|++.. +.......
T Consensus 41 ~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~-~~~~~~~~ 119 (396)
T 3c5m_A 41 KCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLET-LEEQVIYT 119 (396)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTT-CCEEEEEE
T ss_pred CcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCC-CCcEEEEe
Confidence 469999999877644 24789999988876544333322233378999999999999888999999864 33333333
Q ss_pred cCCCCceeE-------------------E-EeeCCCEEEEE-----cCCCcEEEEEccCCceeeeeccCCCcceEEEEEe
Q 028802 78 GLSPNSVDA-------------------L-LKLDEDRVITG-----SENGLISLVGILPNRIIQPIAEHSEYPIESLALS 132 (203)
Q Consensus 78 ~~~~~~v~~-------------------~-~~~~~~~l~~~-----~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~ 132 (203)
. +...... + ++|+++.++.. ..+..|++||+.+++...... +.. .+..+.|+
T Consensus 120 ~-~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~-~~~-~~~~~~~s 196 (396)
T 3c5m_A 120 V-DEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ-DTA-WLGHPIYR 196 (396)
T ss_dssp C-CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE-ESS-CEEEEEEE
T ss_pred c-ccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeecc-CCc-ccccceEC
Confidence 2 2221111 2 46667666554 345679999998887665443 323 68899999
Q ss_pred C-CCCeEEEEeCC------CcEEEEeCCCcc
Q 028802 133 H-DRKFLGSISHD------SMLKLWDLDDIL 156 (203)
Q Consensus 133 ~-~~~~l~~~~~d------~~i~iwd~~~~~ 156 (203)
| ++..|+..+.+ ..|.+|++.+..
T Consensus 197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~ 227 (396)
T 3c5m_A 197 PFDDSTVGFCHEGPHDLVDARMWLVNEDGSN 227 (396)
T ss_dssp TTEEEEEEEEECSCSSSCSCCCEEEETTSCC
T ss_pred CCCCCEEEEEecCCCCCCCceEEEEECCCCc
Confidence 9 78877766543 468899986653
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.6e-13 Score=108.43 Aligned_cols=150 Identities=9% Similarity=-0.030 Sum_probs=99.8
Q ss_pred CcccccCCEEEEE-----cCCCeEEEEEcCCCeEE-E-eecCCcccEEEEEEeeCCCEEEEecCCCe-------------
Q 028802 1 MTFAADAMKLLGT-----SGDGTLSVCNLRKNTVQ-T-RSEFSEEELTSVVLMKNGRKVVCGSQSGT------------- 60 (203)
Q Consensus 1 l~~sp~~~~l~~~-----~~d~~i~v~d~~~~~~~-~-~~~~~~~~i~~l~~~~~~~~l~~~~~d~~------------- 60 (203)
++|||||++||.+ +.+.+|++||+.+++.+ . .+.. .....++|+|||+.|++++.+..
T Consensus 126 ~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~ 203 (695)
T 2bkl_A 126 WAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEG--GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTT 203 (695)
T ss_dssp EEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSC--CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCE
T ss_pred EEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCc--ccccceEEecCCCEEEEEEecCCCCCccccCCCCCE
Confidence 3699999999843 34578999999998764 1 1111 11267899999999999887665
Q ss_pred EEEEEcCCccc---cceeeecCCCCceeEE-EeeCCCEEEEEcCCC----cEEEEEccCCceeeeeccCCCcceEEEEEe
Q 028802 61 VLLYSWGYFKD---CSDRFVGLSPNSVDAL-LKLDEDRVITGSENG----LISLVGILPNRIIQPIAEHSEYPIESLALS 132 (203)
Q Consensus 61 i~v~d~~~~~~---~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg----~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~ 132 (203)
|++|++.+... .+..... +...+..+ |+|+|++|++.+.++ .|++++..++... .+..+.. .+....+
T Consensus 204 v~~~~l~t~~~~~~lv~~~~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~-~~~~~~~- 279 (695)
T 2bkl_A 204 IRYHTLGTEPSKDTVVHERTG-DPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVKGVG-AKYEVHA- 279 (695)
T ss_dssp EEEEETTSCGGGCEEEECCCC-CTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEECSS-CCEEEEE-
T ss_pred EEEEECCCCchhceEEEecCC-CCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-EeecCCC-ceEEEEe-
Confidence 99999975432 1112222 33456677 899999999887665 6777776555433 3444433 4556666
Q ss_pred CCCCeEEEEe---CCCcEEEEeCCCcc
Q 028802 133 HDRKFLGSIS---HDSMLKLWDLDDIL 156 (203)
Q Consensus 133 ~~~~~l~~~~---~d~~i~iwd~~~~~ 156 (203)
++|.+++... .++.|.+|++.++.
T Consensus 280 ~~g~l~~~s~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 280 WKDRFYVLTDEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp ETTEEEEEECTTCTTCEEEEEBTTBCS
T ss_pred cCCcEEEEECCCCCCCEEEEEeCCCCC
Confidence 5666434433 25789999997764
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.7e-11 Score=97.46 Aligned_cols=150 Identities=9% Similarity=0.034 Sum_probs=111.9
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcC-CccccceeeecCCCCc
Q 028802 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG-YFKDCSDRFVGLSPNS 83 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~-~~~~~~~~~~~~~~~~ 83 (203)
|.+.++++...++.|.++|..+++.+..+... ..+..+.|+|+++++++++.++.|.+||+. .....+..+.. .. .
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~-~ 241 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GS-E 241 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CS-E
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-CC-C
Confidence 33446677778899999999999988888653 356789999999999999999999999994 12355555654 33 3
Q ss_pred eeEE-Ee----eCCCEEEEEcC-CCcEEEEEccCCceeeeeccCC----------C------------------------
Q 028802 84 VDAL-LK----LDEDRVITGSE-NGLISLVGILPNRIIQPIAEHS----------E------------------------ 123 (203)
Q Consensus 84 v~~~-~~----~~~~~l~~~~~-dg~v~v~d~~~~~~~~~~~~~~----------~------------------------ 123 (203)
...+ |+ |+|+++++++. .+.|.++|..+.+.+..+.... .
T Consensus 242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~ 321 (567)
T 1qks_A 242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 321 (567)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence 4566 88 69999998876 5889999988877665543210 0
Q ss_pred --------------------cceEEEEEeCCCCeEEEEe-CCCcEEEEeCCCccc
Q 028802 124 --------------------YPIESLALSHDRKFLGSIS-HDSMLKLWDLDDILK 157 (203)
Q Consensus 124 --------------------~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~ 157 (203)
.....+.|+|+|+++++++ .++.|.++|+.++..
T Consensus 322 v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl 376 (567)
T 1qks_A 322 ILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL 376 (567)
T ss_dssp EEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE
T ss_pred EEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcE
Confidence 0123567999999887666 678899999988753
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.8e-12 Score=92.28 Aligned_cols=145 Identities=11% Similarity=0.070 Sum_probs=113.2
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCc-ccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCC-C
Q 028802 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSE-EELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP-N 82 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-~ 82 (203)
..++.|++++.++.|.+||..+++.+..+..+. ..+.++.++|+|++|++ .++.|+.||. + ++.+..+.. .. .
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~-G~~~W~~~~-~~~~ 77 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-D-GRELWNIAA-PAGC 77 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-T-SCEEEEEEC-CTTC
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-C-CCEEEEEcC-CCCc
Confidence 346889999999999999999999999998765 46889999999998883 4678999997 3 566666665 42 4
Q ss_pred ceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCceeeeeccCCC-----cceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 83 SVDAL-LKLDEDRVITGSE-NGLISLVGILPNRIIQPIAEHSE-----YPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~-dg~v~v~d~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
.+.++ +.|+|+++++.+. .+.|..++. +|+.+..+..... .....+.+.++|++|++...++.|..||.. +
T Consensus 78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G 155 (276)
T 3no2_A 78 EMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G 155 (276)
T ss_dssp EEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred cccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence 56666 7899999999887 777888885 6777766542211 134556789999999999999999999987 5
Q ss_pred c
Q 028802 156 L 156 (203)
Q Consensus 156 ~ 156 (203)
+
T Consensus 156 ~ 156 (276)
T 3no2_A 156 Q 156 (276)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=3.5e-11 Score=88.44 Aligned_cols=148 Identities=9% Similarity=0.150 Sum_probs=107.7
Q ss_pred cc-cccCCEEEEEcC-CCeEEEEEcCCCeEEEeec-CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee-
Q 028802 2 TF-AADAMKLLGTSG-DGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV- 77 (203)
Q Consensus 2 ~~-sp~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~- 77 (203)
++ .++++++++... ++.|++|+ .+++.+..+. .+...+..++++|+++++++...++.|.+|+.. +..+..+.
T Consensus 83 ~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~~~~ 159 (286)
T 1q7f_A 83 AVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN--GNVLHKFGC 159 (286)
T ss_dssp EEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEEEC
T ss_pred EEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC--CCEEEEeCC
Confidence 45 356666665533 78999999 5566666554 334568999999999988887788999999964 34444443
Q ss_pred -cCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC-CcceEEEEEeCCCCeEEEEeCCC-cEEEEeCC
Q 028802 78 -GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS-EYPIESLALSHDRKFLGSISHDS-MLKLWDLD 153 (203)
Q Consensus 78 -~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~-~i~iwd~~ 153 (203)
. +...+..+ ++|+++++++...++.|++|+. .++.+..+..+. ...+..++++++|+++++...++ .|.+|+..
T Consensus 160 ~~-~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~ 237 (286)
T 1q7f_A 160 SK-HLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD 237 (286)
T ss_dssp TT-TCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred CC-ccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC
Confidence 2 33456778 8999998877778899999997 456665664431 12688999999998888887775 99999965
Q ss_pred C
Q 028802 154 D 154 (203)
Q Consensus 154 ~ 154 (203)
.
T Consensus 238 g 238 (286)
T 1q7f_A 238 G 238 (286)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.43 E-value=8.9e-12 Score=91.66 Aligned_cols=148 Identities=7% Similarity=-0.017 Sum_probs=114.8
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCC-cccEEEEEEeeCCCEEEEecC-CCeEEEEEcCCccccceeeecC
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~i~~l~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
+++|+|++|++ .++.|..||. +++.+..+..+ ...+.++.+.++|+.+++.+. ++.+..++. .++.+..+...
T Consensus 43 ~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~--~Gk~l~~~~~~ 117 (276)
T 3no2_A 43 AATKAGEILFS--YSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM--KGEVLSKTEFE 117 (276)
T ss_dssp EECTTSCEEEE--CBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT--TSCEEEEEEEC
T ss_pred EECCCCCEEEe--CCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC--CCCEEEEEecc
Confidence 57899998883 4688999998 88888888765 357888999999999998876 777777775 34555444320
Q ss_pred -----CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 80 -----SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 80 -----~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
+......+ ..++|+++++...++.|.+||.. |+.+..+... . .+.++...++|+.++++..++.|..+|..
T Consensus 118 ~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~-~~~~~~~~~~g~~~v~~~~~~~v~~~d~~ 194 (276)
T 3no2_A 118 TGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-G-TPFSSAFLDNGDCLVACGDAHCFVQLNLE 194 (276)
T ss_dssp CSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-S-CCCEEEECTTSCEEEECBTTSEEEEECTT
T ss_pred CCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-C-CccceeEcCCCCEEEEeCCCCeEEEEeCc
Confidence 11123334 68899999999999999999988 9999888765 3 46678889999999998888899999998
Q ss_pred Cccc
Q 028802 154 DILK 157 (203)
Q Consensus 154 ~~~~ 157 (203)
+++.
T Consensus 195 tG~~ 198 (276)
T 3no2_A 195 SNRI 198 (276)
T ss_dssp TCCE
T ss_pred CCcE
Confidence 7654
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.4e-11 Score=91.03 Aligned_cols=147 Identities=10% Similarity=0.014 Sum_probs=104.8
Q ss_pred CcccccCC-EEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-
Q 028802 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG- 78 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~- 78 (203)
++|+|+++ +++++..++.|.+|+..++ ...+..+...+.+++++|+++++++...++.|.+||..+ +........
T Consensus 33 ~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~-g~~~~~~~~~ 109 (296)
T 3e5z_A 33 PVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG-GEWESIADSF 109 (296)
T ss_dssp EEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT-CCEEEEECEE
T ss_pred CeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC-CcEEEEeecc
Confidence 47999998 7788888899999999887 455555667799999999999888877778999999853 232221111
Q ss_pred --CCCCceeEE-EeeCCCEEEE----Ec-------------CCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeE
Q 028802 79 --LSPNSVDAL-LKLDEDRVIT----GS-------------ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFL 138 (203)
Q Consensus 79 --~~~~~v~~~-~~~~~~~l~~----~~-------------~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 138 (203)
.....+..+ ++|+|+++++ ++ ..+.|..++.. ++.. .+..+.. ....++|+|+++.|
T Consensus 110 ~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~~~~~-~~~gi~~s~dg~~l 186 (296)
T 3e5z_A 110 EGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS-APIRDRV-KPNGLAFLPSGNLL 186 (296)
T ss_dssp TTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE-EEECCCS-SEEEEEECTTSCEE
T ss_pred CCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE-EeecCCC-CCccEEECCCCCEE
Confidence 011234566 8999998887 33 13456666654 4433 3333323 57899999999998
Q ss_pred EEEeCCCcEEEEeCC
Q 028802 139 GSISHDSMLKLWDLD 153 (203)
Q Consensus 139 ~~~~~d~~i~iwd~~ 153 (203)
++.+.++.|.+|++.
T Consensus 187 v~~~~~~~i~~~~~~ 201 (296)
T 3e5z_A 187 VSDTGDNATHRYCLN 201 (296)
T ss_dssp EEETTTTEEEEEEEC
T ss_pred EEeCCCCeEEEEEEC
Confidence 777778999999986
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.2e-12 Score=95.19 Aligned_cols=140 Identities=14% Similarity=0.160 Sum_probs=97.7
Q ss_pred CcccccCCEEEEEcC---------------------------CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEE
Q 028802 1 MTFAADAMKLLGTSG---------------------------DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV 53 (203)
Q Consensus 1 l~~sp~~~~l~~~~~---------------------------d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~ 53 (203)
++|+|+|+.|++++. ...|++|++.+++.+..+.. . .+..+.|+|+| +++
T Consensus 109 ~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~ 185 (347)
T 2gop_A 109 LEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVV 185 (347)
T ss_dssp EEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEE
T ss_pred eeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEE
Confidence 469999999888763 25799999998876444444 3 78889999999 777
Q ss_pred EecCCC-------eEEEEEcCCccccceeeecCCCCceeEEEeeCCCEEEEEcCC--------CcEEEEEccCCceeeee
Q 028802 54 CGSQSG-------TVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSEN--------GLISLVGILPNRIIQPI 118 (203)
Q Consensus 54 ~~~~d~-------~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d--------g~v~v~d~~~~~~~~~~ 118 (203)
++..+. ...+|.+. .+ ....+.. + ..+..+ +|+|+.|++++.+ ..|.+|| +++.....
T Consensus 186 ~~~~~~~~~~~~~~~~l~~~d-~~-~~~~l~~-~-~~~~~~-spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~ 258 (347)
T 2gop_A 186 NVPHREIIPQYFKFWDIYIWE-DG-KEEKMFE-K-VSFYAV-DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGIL 258 (347)
T ss_dssp EEECCCSSCCSSCCEEEEEEE-TT-EEEEEEE-E-ESEEEE-EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESS
T ss_pred EEecccccccccccccEEEeC-CC-ceEEecc-C-cceeeE-CCCCCEEEEEEccccCCccccceEEEEC--CCceEecc
Confidence 765432 34555544 23 3344554 4 444444 9999998877644 3688888 56555444
Q ss_pred ccCCCcceEE-EEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 119 AEHSEYPIES-LALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 119 ~~~~~~~i~~-~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
..+ ...+.. +.|+ ++ .+++++.++.+++| +.+
T Consensus 259 ~~~-~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~ 291 (347)
T 2gop_A 259 DEV-DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWD 291 (347)
T ss_dssp TTC-CSEEEEEEEET-TE-EEEEEEETTEEEEE-EES
T ss_pred ccC-CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcC
Confidence 444 336776 8999 88 88888899999999 863
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.9e-11 Score=88.97 Aligned_cols=153 Identities=7% Similarity=-0.070 Sum_probs=107.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
|+++|+|+++++...++.|.+|+..+.............+.+++++++++++++...++.|.+|+.... ........ .
T Consensus 113 i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~-~~~~~~~~-~ 190 (270)
T 1rwi_B 113 LAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN-NQVVLPFT-D 190 (270)
T ss_dssp EEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC-CEEECCCS-S
T ss_pred eEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC-ceEeeccc-C
Confidence 467888987777777889999976554333222233345778999999997777777889999998642 22222222 3
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
...+..+ ++++|.++++...++.|.+|+............+ ...+.+++++++|+.+++...++.|++|++...+
T Consensus 191 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~-~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 191 ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTG-LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCS-CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCC-CCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 3556777 7999977777777889999998654433222222 1268899999999988888889999999986554
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-11 Score=93.14 Aligned_cols=139 Identities=12% Similarity=0.111 Sum_probs=92.9
Q ss_pred CcccccCCEEEEEcCC---C--eEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCC-----------------
Q 028802 1 MTFAADAMKLLGTSGD---G--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS----------------- 58 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d---~--~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d----------------- 58 (203)
++|||||++|++++.+ + .|++|++.+++.......+ . +..++|+|+++.|+.++.+
T Consensus 64 ~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~ 141 (347)
T 2gop_A 64 PRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWF 141 (347)
T ss_dssp EEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC-
T ss_pred eEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceee
Confidence 3699999999887643 2 4888898888765544433 3 8999999999998887632
Q ss_pred ----------CeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCC-------cEEEEEccCCceeeeecc
Q 028802 59 ----------GTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENG-------LISLVGILPNRIIQPIAE 120 (203)
Q Consensus 59 ----------~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg-------~v~v~d~~~~~~~~~~~~ 120 (203)
..|++||+.. +..+..+.. . .+..+ |+|+| +++++..+. ...+|.+.+++. ..+..
T Consensus 142 ~g~~~~~~~~~~l~~~d~~~-~~~~~~l~~-~--~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~ 215 (347)
T 2gop_A 142 DDLGFFDGEKTTFWIFDTES-EEVIEEFEK-P--RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFE 215 (347)
T ss_dssp --------CEEEEEEEETTT-TEEEEEEEE-E--TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEE
T ss_pred cCcccccCccceEEEEECCC-CeEEeeecC-C--CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEecc
Confidence 5688899864 333244554 2 56667 89999 777665432 334444444443 33433
Q ss_pred CCCcceEEEEEeCCCCeEEEEeCC--------CcEEEEe
Q 028802 121 HSEYPIESLALSHDRKFLGSISHD--------SMLKLWD 151 (203)
Q Consensus 121 ~~~~~i~~~~~~~~~~~l~~~~~d--------~~i~iwd 151 (203)
+ . .+..+ +|+|++|+.++.+ ..|.+||
T Consensus 216 ~-~-~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d 250 (347)
T 2gop_A 216 K-V-SFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD 250 (347)
T ss_dssp E-E-SEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred C-c-ceeeE--CCCCCEEEEEEccccCCccccceEEEEC
Confidence 3 2 45544 9999998877744 3688888
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.39 E-value=4.1e-11 Score=90.16 Aligned_cols=150 Identities=10% Similarity=-0.002 Sum_probs=106.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCc-----ccEEEEEEeeCCCEEEEec--CCCeEEEEEcCCccccc
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSE-----EELTSVVLMKNGRKVVCGS--QSGTVLLYSWGYFKDCS 73 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-----~~i~~l~~~~~~~~l~~~~--~d~~i~v~d~~~~~~~~ 73 (203)
|+++++++.+++...++.|.+||..+++....+.... .....+++ . +..|+++. .++.|.++|+.+ ....
T Consensus 89 i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t-~~~~ 165 (328)
T 3dsm_A 89 IHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTET-DKVV 165 (328)
T ss_dssp EEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTT-TEEE
T ss_pred EEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCC-CeEE
Confidence 4677888544444478999999999998877665432 14556777 3 44555544 488999999975 4555
Q ss_pred eeeecCCCCceeEE-EeeCCCEEEEEcCC----------CcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe
Q 028802 74 DRFVGLSPNSVDAL-LKLDEDRVITGSEN----------GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~~~~~l~~~~~d----------g~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 142 (203)
..+.. .. ....+ ++|+|++++++..+ +.|.++|..+++....+..........++|+|++++|+++.
T Consensus 166 ~~i~~-g~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~ 243 (328)
T 3dsm_A 166 DELTI-GI-QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN 243 (328)
T ss_dssp EEEEC-SS-CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES
T ss_pred EEEEc-CC-CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc
Confidence 55554 33 33455 79999877776554 78999999988877666543222578999999999988775
Q ss_pred CCCcEEEEeCCCccc
Q 028802 143 HDSMLKLWDLDDILK 157 (203)
Q Consensus 143 ~d~~i~iwd~~~~~~ 157 (203)
. .|.+||+.++..
T Consensus 244 ~--~v~~~d~~t~~~ 256 (328)
T 3dsm_A 244 N--DIWRMPVEADRV 256 (328)
T ss_dssp S--SEEEEETTCSSC
T ss_pred c--EEEEEECCCCce
Confidence 4 899999987664
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.39 E-value=2.6e-11 Score=92.52 Aligned_cols=143 Identities=12% Similarity=0.099 Sum_probs=105.7
Q ss_pred ccCCEEEEEc------CCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC----------CCeEEEEEcCC
Q 028802 5 ADAMKLLGTS------GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ----------SGTVLLYSWGY 68 (203)
Q Consensus 5 p~~~~l~~~~------~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~----------d~~i~v~d~~~ 68 (203)
++++++++.. .|+.|++||..+++.+..+..+..+ .++|+|+++++++++. ++.|.+||+.+
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t 90 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK 90 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence 3677776653 3679999999999888888766555 8999999999998763 56799999874
Q ss_pred ccccceeeecCC------CCceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeee-eccCCCcceEEEEEeCCC-Ce
Q 028802 69 FKDCSDRFVGLS------PNSVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQP-IAEHSEYPIESLALSHDR-KF 137 (203)
Q Consensus 69 ~~~~~~~~~~~~------~~~v~~~-~~~~~~~l~~~~~--dg~v~v~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~-~~ 137 (203)
.+.+..+.. . ......+ ++|+|+++++++. ++.|.+||+.+++.+.. +... . ...+.+.|++ ..
T Consensus 91 -~~~~~~i~~-~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~--~~~v~~~p~~~~~ 165 (361)
T 2oiz_A 91 -LTFEKEISL-PPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-G--CWSVIPQPNRPRS 165 (361)
T ss_dssp -CCEEEEEEE-CTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-T--EEEEEECTTSSSE
T ss_pred -CcEEEEEEc-CccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-C--cceeEEcCCCCee
Confidence 355555542 2 1234556 8999999999874 57899999999988877 6543 2 3445667765 56
Q ss_pred EEEEeCCCcEEEEeCCC
Q 028802 138 LGSISHDSMLKLWDLDD 154 (203)
Q Consensus 138 l~~~~~d~~i~iwd~~~ 154 (203)
+++.+.||.+.+|++..
T Consensus 166 ~~~~~~dg~~~~v~~~~ 182 (361)
T 2oiz_A 166 FMTICGDGGLLTINLGE 182 (361)
T ss_dssp EEEEETTSSEEEEEECT
T ss_pred EEEECCCCcEEEEEECC
Confidence 67777888888887754
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.37 E-value=8.7e-11 Score=85.39 Aligned_cols=152 Identities=7% Similarity=-0.038 Sum_probs=105.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
|+++++|+++++.. ++.|.+|+..+.............+..+++.++++++++...++.|.+|+.... ........ .
T Consensus 72 i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~-~~~~~~~~-~ 148 (270)
T 1rwi_B 72 LAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSK-TQTVLPFT-G 148 (270)
T ss_dssp EEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCC-SCEECCCC-S
T ss_pred eEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCc-eeEeeccc-c
Confidence 46788888666655 889999998765433222223356889999999998777777889999976432 11111112 2
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
...+..+ ++++++++++...++.|.+|+............+. ..+..++++++|..+++...++.|.+|+..+..
T Consensus 149 ~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~ 224 (270)
T 1rwi_B 149 LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDI-TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT 224 (270)
T ss_dssp CCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSC-CSEEEEEECTTCCEEEEETTTSCEEEECTTCSC
T ss_pred CCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCC-CCceEEEECCCCCEEEEECCCCcEEEEcCCCCc
Confidence 2356667 79999877777778899999987665543332322 368899999999777776678899999986643
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-10 Score=88.58 Aligned_cols=155 Identities=12% Similarity=0.015 Sum_probs=108.3
Q ss_pred CcccccCCEEEEEc----------CCCeEEEEEcCCCeEEEeecCC-------cccEEEEEEeeCCCEEEEecC--CCeE
Q 028802 1 MTFAADAMKLLGTS----------GDGTLSVCNLRKNTVQTRSEFS-------EEELTSVVLMKNGRKVVCGSQ--SGTV 61 (203)
Q Consensus 1 l~~sp~~~~l~~~~----------~d~~i~v~d~~~~~~~~~~~~~-------~~~i~~l~~~~~~~~l~~~~~--d~~i 61 (203)
+++||||++|+++. .++.|.+||..+.+.+..+... ......++|+|+|++|++++. ++.|
T Consensus 71 i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v 150 (373)
T 2mad_H 71 PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAV 150 (373)
T ss_pred eEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeE
Confidence 57999999998875 3678999999988777666432 123457899999999998874 4789
Q ss_pred EEEEcCCcccccee-eec-------------------------------------------------CCC----------
Q 028802 62 LLYSWGYFKDCSDR-FVG-------------------------------------------------LSP---------- 81 (203)
Q Consensus 62 ~v~d~~~~~~~~~~-~~~-------------------------------------------------~~~---------- 81 (203)
.++| .+. +.+.. +.. .+.
T Consensus 151 ~viD-~t~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 228 (373)
T 2mad_H 151 GLVV-QGG-SSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIV 228 (373)
T ss_pred EEEE-CCC-CEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEE
Confidence 9998 642 32222 100 000
Q ss_pred --------------------------------------CceeEE-EeeCCCEEEEEcC----------CCcEEEEEccCC
Q 028802 82 --------------------------------------NSVDAL-LKLDEDRVITGSE----------NGLISLVGILPN 112 (203)
Q Consensus 82 --------------------------------------~~v~~~-~~~~~~~l~~~~~----------dg~v~v~d~~~~ 112 (203)
.....+ ++|+++.++++.. .+.|.++|+.++
T Consensus 229 ~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~ 308 (373)
T 2mad_H 229 WPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG 308 (373)
T ss_pred EEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC
Confidence 000013 4556666665543 347999999999
Q ss_pred ceeeeeccCCCcceEEEEEeCCCC-eEEEEe-CCCcEEEEeCCCcccCC
Q 028802 113 RIIQPIAEHSEYPIESLALSHDRK-FLGSIS-HDSMLKLWDLDDILKGS 159 (203)
Q Consensus 113 ~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~d~~i~iwd~~~~~~~~ 159 (203)
+.+..+... . ...+++|+|||+ .++++. .++.|.+||+.+++...
T Consensus 309 ~vv~~i~~g-~-~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~ 355 (373)
T 2mad_H 309 QTSSQISLG-H-DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQ 355 (373)
T ss_pred EEEEEEECC-C-CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEe
Confidence 888888654 3 578999999999 677776 58999999999887553
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.35 E-value=3.5e-11 Score=90.24 Aligned_cols=150 Identities=11% Similarity=0.069 Sum_probs=108.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
|+|+|++..++..+.++.+++| .+.....+..+...+.+++|+|++++++++..++.|.+||... +........ +
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~-~~~~~~~~~-~ 85 (333)
T 2dg1_A 11 LFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPET-KEIKRPFVS-H 85 (333)
T ss_dssp CCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTT-CCEEEEEEC-S
T ss_pred eeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCC-CcEEEEeeC-C
Confidence 5688888888777778899999 3445556666667789999999999888888899999999864 333332324 5
Q ss_pred CCceeEE-EeeCCCEEEEEcCC----CcEEEEEccCCceeeeecc-CCCcceEEEEEeCCCCeEEEEeC------CCcEE
Q 028802 81 PNSVDAL-LKLDEDRVITGSEN----GLISLVGILPNRIIQPIAE-HSEYPIESLALSHDRKFLGSISH------DSMLK 148 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d----g~v~v~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~------d~~i~ 148 (203)
...+.++ ++|+++++++...+ +.|.+||..++.....+.. .....+..++++|+|+.+++... .+.|.
T Consensus 86 ~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~ 165 (333)
T 2dg1_A 86 KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVY 165 (333)
T ss_dssp SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEE
T ss_pred CCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEE
Confidence 5678888 89999988777666 6899999887765433321 11236899999999987776553 35677
Q ss_pred EEeCCCc
Q 028802 149 LWDLDDI 155 (203)
Q Consensus 149 iwd~~~~ 155 (203)
.|+..+.
T Consensus 166 ~~~~~~~ 172 (333)
T 2dg1_A 166 YVSPDFR 172 (333)
T ss_dssp EECTTSC
T ss_pred EEeCCCC
Confidence 7776543
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.6e-11 Score=101.93 Aligned_cols=151 Identities=12% Similarity=0.086 Sum_probs=100.3
Q ss_pred CcccccCCEEEEEcCC-----CeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCe--------------E
Q 028802 1 MTFAADAMKLLGTSGD-----GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT--------------V 61 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~--------------i 61 (203)
++|||||++|+.+..+ ..|++||+.+++.+... .+...+..++|+|| +.|+.++.++. |
T Consensus 168 ~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v 245 (741)
T 1yr2_A 168 WAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTV 245 (741)
T ss_dssp EEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEE
T ss_pred EEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEE
Confidence 3699999999887543 46999999998765431 11222357899999 98888776543 8
Q ss_pred EEEEcCCccccce-eeec-CCCCceeEE-EeeCCCEEEEEcCCC-----cEEEEEccCC--ceeeeeccCCCcceEEEEE
Q 028802 62 LLYSWGYFKDCSD-RFVG-LSPNSVDAL-LKLDEDRVITGSENG-----LISLVGILPN--RIIQPIAEHSEYPIESLAL 131 (203)
Q Consensus 62 ~v~d~~~~~~~~~-~~~~-~~~~~v~~~-~~~~~~~l~~~~~dg-----~v~v~d~~~~--~~~~~~~~~~~~~i~~~~~ 131 (203)
++|++.+....-. .+.. .+...+..+ |+|+|++|+..+.++ .|++||+.++ ++...+..+.. .+... +
T Consensus 246 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-~~~~~-~ 323 (741)
T 1yr2_A 246 WLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLK-AQWDF-V 323 (741)
T ss_dssp EEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSS-SCEEE-E
T ss_pred EEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCC-ceEEE-E
Confidence 8899864322111 2222 012235666 899999998877543 7999999876 41344544433 34444 3
Q ss_pred eCCCCeEEEEeC----CCcEEEEeCCCc
Q 028802 132 SHDRKFLGSISH----DSMLKLWDLDDI 155 (203)
Q Consensus 132 ~~~~~~l~~~~~----d~~i~iwd~~~~ 155 (203)
+|+|..|+..+. .+.|.+|++.++
T Consensus 324 ~~dg~~l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 324 DGVGDQLWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp EEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred eccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 589998887765 345999998774
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.1e-10 Score=84.68 Aligned_cols=149 Identities=8% Similarity=0.014 Sum_probs=103.2
Q ss_pred CcccccCCEEEE----Ec-------------CCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEE
Q 028802 1 MTFAADAMKLLG----TS-------------GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLL 63 (203)
Q Consensus 1 l~~sp~~~~l~~----~~-------------~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v 63 (203)
++++|+|+++++ |+ ..+.|..++.. +.. ..+..+......++|+|+++.|++.+.++.|.+
T Consensus 120 i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~ 197 (296)
T 3e5z_A 120 VCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHR 197 (296)
T ss_dssp EEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCCSSEEEEEECTTSCEEEEETTTTEEEE
T ss_pred EEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCCCCCccEEECCCCCEEEEeCCCCeEEE
Confidence 467899988886 33 13456666655 443 333444566789999999999877777899999
Q ss_pred EEcCCcccc---ceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEE-eCCCCeE
Q 028802 64 YSWGYFKDC---SDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLAL-SHDRKFL 138 (203)
Q Consensus 64 ~d~~~~~~~---~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l 138 (203)
|++...+.. ...+.. ....+..+ ++++|+++++. ++.|.+|+.. ++.+..+..+.. +.+++| .|+++.|
T Consensus 198 ~~~~~~g~~~~~~~~~~~-~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~--~~~~~f~~~d~~~L 271 (296)
T 3e5z_A 198 YCLNARGETEYQGVHFTV-EPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT--TSNLCFGGPEGRTL 271 (296)
T ss_dssp EEECSSSCEEEEEEEECC-SSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC--CCEEEEESTTSCEE
T ss_pred EEECCCCcCcCCCeEeeC-CCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC--ceeEEEECCCCCEE
Confidence 998632332 223322 34455667 89999876666 7889999986 777777776633 788999 5899988
Q ss_pred EEEeCCCcEEEEeCCCcccC
Q 028802 139 GSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 139 ~~~~~d~~i~iwd~~~~~~~ 158 (203)
++++.+ .|..++..+...+
T Consensus 272 ~v~t~~-~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 272 YMTVST-EFWSIETNVRGLE 290 (296)
T ss_dssp EEEETT-EEEEEECSCCBCC
T ss_pred EEEcCC-eEEEEEccccccc
Confidence 888765 4666666555443
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.4e-10 Score=95.54 Aligned_cols=148 Identities=9% Similarity=0.000 Sum_probs=101.7
Q ss_pred CcccccCCEEEEEcCCCe-------------EEEEEcCCCe----EEEeecCCcccEEEEEEeeCCCEEEEecCCC----
Q 028802 1 MTFAADAMKLLGTSGDGT-------------LSVCNLRKNT----VQTRSEFSEEELTSVVLMKNGRKVVCGSQSG---- 59 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~-------------i~v~d~~~~~----~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~---- 59 (203)
++|+|||+.|++++.+.. |++|++.++. ++.....+...+..+.|+|+|++|+.++.++
T Consensus 173 ~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~ 252 (695)
T 2bkl_A 173 PKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSEN 252 (695)
T ss_dssp CEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEE
T ss_pred eEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCce
Confidence 579999999999888765 9999998764 3334444556788999999999988777655
Q ss_pred eEEEEEcCCccccceeeecCCCCceeEEEeeCCCEEEEEcC----CCcEEEEEccCCce---eeeeccCCCcceEEEEEe
Q 028802 60 TVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSE----NGLISLVGILPNRI---IQPIAEHSEYPIESLALS 132 (203)
Q Consensus 60 ~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~----dg~v~v~d~~~~~~---~~~~~~~~~~~i~~~~~~ 132 (203)
.|++++.. ......+.. +...+...+.+++. ++..+. ++.|.+|++.++.. ...+..+....+..++|+
T Consensus 253 ~l~~~~~~--~~~~~~l~~-~~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~ 328 (695)
T 2bkl_A 253 DVYWKRPG--EKDFRLLVK-GVGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV 328 (695)
T ss_dssp EEEEECTT--CSSCEEEEE-CSSCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE
T ss_pred EEEEEcCC--CCceEEeec-CCCceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE
Confidence 56666543 234455555 55555555347777 555443 57899999987653 333333223357888888
Q ss_pred CCCCeEEEEeCCCcEEEEeCC
Q 028802 133 HDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 133 ~~~~~l~~~~~d~~i~iwd~~ 153 (203)
++..+++...|+..+||.+.
T Consensus 329 -~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 329 -GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp -TTEEEEEEEETTEEEEEEEE
T ss_pred -CCEEEEEEEECCEEEEEEEe
Confidence 66777888888888777554
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.32 E-value=3.5e-11 Score=92.18 Aligned_cols=128 Identities=10% Similarity=0.064 Sum_probs=96.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
|+| +++.|+++ .++.|++||+.+.........+..++.++.+.+. .+++++.+|.+.+||+... ... . .
T Consensus 93 l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~-~~~----~-~ 161 (388)
T 1xip_A 93 VCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTK-STK----Q-L 161 (388)
T ss_dssp EEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTC-CEE----E-E
T ss_pred EEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCC-ccc----c-c
Confidence 456 88999998 7899999999865444445555667888777654 3888899999999999742 322 1 3
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCce--eeee------c---cCCCcceEEEEEeCCCCeEEEEe
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI--IQPI------A---EHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~--~~~~------~---~~~~~~i~~~~~~~~~~~l~~~~ 142 (203)
...+.++ |+|+| ++.|..+|.+++|+...+.. ..++ . +| ...|.++.|.+++.++++-.
T Consensus 162 ~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~-~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 162 AQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVE-EYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTT-TSEEEEEEESSSSEEEEEEE
T ss_pred cCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCC-CeeEEEEEEecCCeEEEEEc
Confidence 4578899 99999 67899999999999887664 4455 2 24 34799999999999887643
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.8e-09 Score=78.27 Aligned_cols=149 Identities=8% Similarity=-0.027 Sum_probs=104.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce-eeecC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD-RFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~~ 79 (203)
|+++++|.++++...++.|..|+.........+......+..+++.+++.++++...++.|.+||.. +.... ....
T Consensus 62 i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~--g~~~~~~~~~- 138 (299)
T 2z2n_A 62 LTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDD--GKIREYELPN- 138 (299)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT--CCEEEEECSS-
T ss_pred EEECCCCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCC--CCEEEecCCC-
Confidence 3577888888877778899999976322222222344578899999999888887778899999873 22221 1222
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeee-eccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQP-IAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
....+..+ +.+++.++++....+.|.+|+. +++.... +... ...+..++++++|+.+++...++.|.+|+. ++
T Consensus 139 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g 213 (299)
T 2z2n_A 139 KGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTP-ASGPVGITKGNDDALWFVEIIGNKIGRITT-SG 213 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSST-TCCEEEEEECTTSSEEEEETTTTEEEEECT-TC
T ss_pred CCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCC-CCcceeEEECCCCCEEEEccCCceEEEECC-CC
Confidence 33456777 7899988877777789999998 6665432 2222 226889999999987766666789999998 44
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.6e-09 Score=85.98 Aligned_cols=152 Identities=11% Similarity=0.073 Sum_probs=105.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcC--CCeEEEeecCCcccEEEEEEe----eCCCEEEEecC-CCeEEEEEcCCccccc
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLR--KNTVQTRSEFSEEELTSVVLM----KNGRKVVCGSQ-SGTVLLYSWGYFKDCS 73 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~--~~~~~~~~~~~~~~i~~l~~~----~~~~~l~~~~~-d~~i~v~d~~~~~~~~ 73 (203)
++|||||+++++++.++.|.+||+. +++.+..+... .....++|+ |+|+++++++. .+++.++|..+. +.+
T Consensus 202 v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~-~~~ 279 (567)
T 1qks_A 202 SRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL-EPK 279 (567)
T ss_dssp EEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC-CEE
T ss_pred eEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCC-cEE
Confidence 4689999999999999999999995 77777777653 346789999 69999887775 589999997542 332
Q ss_pred eeeecC---------------------C---------------------------------CCceeEE-EeeCCCEEEEE
Q 028802 74 DRFVGL---------------------S---------------------------------PNSVDAL-LKLDEDRVITG 98 (203)
Q Consensus 74 ~~~~~~---------------------~---------------------------------~~~v~~~-~~~~~~~l~~~ 98 (203)
..+... + ......+ |+|++++++++
T Consensus 280 ~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va 359 (567)
T 1qks_A 280 KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITA 359 (567)
T ss_dssp EEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEE
T ss_pred EEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEE
Confidence 222110 0 0012245 78999988776
Q ss_pred c-CCCcEEEEEccCCceeeeecc-CCCc-ceEEEE-EeCCCCeE-EEEe-CCCcEEEEeCCC
Q 028802 99 S-ENGLISLVGILPNRIIQPIAE-HSEY-PIESLA-LSHDRKFL-GSIS-HDSMLKLWDLDD 154 (203)
Q Consensus 99 ~-~dg~v~v~d~~~~~~~~~~~~-~~~~-~i~~~~-~~~~~~~l-~~~~-~d~~i~iwd~~~ 154 (203)
+ .++.|.++|+.+++.+..+.. .... +-..+. ++|++..+ ++.. .++.|.++|..+
T Consensus 360 ~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 360 ANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp EGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred eCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCC
Confidence 6 478899999999988766654 2110 101222 58875544 4443 468999999987
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.24 E-value=6.3e-10 Score=85.05 Aligned_cols=144 Identities=10% Similarity=-0.067 Sum_probs=104.9
Q ss_pred ccccCCEEEEEcC-----CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEec----------CCCeEEEEEcC
Q 028802 3 FAADAMKLLGTSG-----DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS----------QSGTVLLYSWG 67 (203)
Q Consensus 3 ~sp~~~~l~~~~~-----d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~----------~d~~i~v~d~~ 67 (203)
..|+++.+++... ++.|.++|..+++.+..+.....+ . ++++|+++++++++ .++.|.+||..
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~ 117 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 117 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 4689998888755 679999999999999888765555 4 99999999888775 35789999997
Q ss_pred CccccceeeecCCC-------CceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCe
Q 028802 68 YFKDCSDRFVGLSP-------NSVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF 137 (203)
Q Consensus 68 ~~~~~~~~~~~~~~-------~~v~~~-~~~~~~~l~~~~~--dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 137 (203)
+ ...+..+.. .. .....+ ++|+|+++++++. ++.|.++|+.+++.+.++... + + ...+....+.
T Consensus 118 t-~~v~~~I~v-~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~-g--~-~~~~P~g~~~ 191 (386)
T 3sjl_D 118 T-LLPTADIEL-PDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP-D--C-YHIFPTAPDT 191 (386)
T ss_dssp T-CCEEEEEEE-TTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC-S--E-EEEEEEETTE
T ss_pred C-CeEEEEEEC-CCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC-C--c-ceeecCCCce
Confidence 5 455555532 21 134456 8999999998874 688999999999999888654 2 2 1223333455
Q ss_pred EEEEeCCCcEEEEeCCC
Q 028802 138 LGSISHDSMLKLWDLDD 154 (203)
Q Consensus 138 l~~~~~d~~i~iwd~~~ 154 (203)
+++.+.||.+.+.++.+
T Consensus 192 ~~~~~~DG~~~~v~~~~ 208 (386)
T 3sjl_D 192 FFMHCRDGSLAKVAFGT 208 (386)
T ss_dssp EEEEETTSCEEEEECCS
T ss_pred eEEECCCCCEEEEECCC
Confidence 56666677777777654
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.24 E-value=5.5e-10 Score=82.83 Aligned_cols=150 Identities=8% Similarity=0.072 Sum_probs=102.8
Q ss_pred CcccccCCEEEEEcCC---------------CeEEEEEcCCCeEEEeecCCcccEEEEEEe----eCCCEEEEe-cCCCe
Q 028802 1 MTFAADAMKLLGTSGD---------------GTLSVCNLRKNTVQTRSEFSEEELTSVVLM----KNGRKVVCG-SQSGT 60 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d---------------~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~----~~~~~l~~~-~~d~~ 60 (203)
|+++|+|+++++...+ +.|..|+.. ++..... .+......++|+ |+++.|+++ ..++.
T Consensus 122 i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~ 199 (314)
T 1pjx_A 122 CAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKK 199 (314)
T ss_dssp EEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTE
T ss_pred EEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCe
Confidence 3577888877776554 567777765 5443322 223446789999 998765554 56789
Q ss_pred EEEEEcCCccc-----cceeeecCCC-CceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeC
Q 028802 61 VLLYSWGYFKD-----CSDRFVGLSP-NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH 133 (203)
Q Consensus 61 i~v~d~~~~~~-----~~~~~~~~~~-~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~ 133 (203)
|.+|++...+. ....+.. +. ..+..+ ++++|.++++...++.|.+||..+++.+..+..+.. .+.+++|+|
T Consensus 200 i~~~~~~~~g~~~~~~~~~~~~~-~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~-~~~~i~~~~ 277 (314)
T 1pjx_A 200 LWSYDIKGPAKIENKKVWGHIPG-THEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFE-KPSNLHFKP 277 (314)
T ss_dssp EEEEEEEETTEEEEEEEEEECCC-CSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSS-CEEEEEECT
T ss_pred EEEEECCCCCccccceEEEECCC-CCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCC-CceeEEECC
Confidence 99999752122 1122222 22 446667 799998888877788999999887776666665533 689999999
Q ss_pred CCCeEEEEe-CCCcEEEEeCCC
Q 028802 134 DRKFLGSIS-HDSMLKLWDLDD 154 (203)
Q Consensus 134 ~~~~l~~~~-~d~~i~iwd~~~ 154 (203)
++++|++++ .++.|..|++..
T Consensus 278 dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 278 QTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TSSEEEEEETTTTEEEEEECSS
T ss_pred CCCEEEEEeCCCCeEEEEeCCC
Confidence 999665544 568899999864
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.23 E-value=9.8e-10 Score=82.60 Aligned_cols=144 Identities=7% Similarity=0.005 Sum_probs=102.9
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCC-----
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP----- 81 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~----- 81 (203)
++.+++...++.|.+||..+++.+..+.. ......+++++++..+++...++.|.+||..+ ......+.. ..
T Consensus 54 ~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t-~~~~~~i~~-g~~~~~~ 130 (328)
T 3dsm_A 54 GIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKT-YEITGYIEC-PDMDMES 130 (328)
T ss_dssp TEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTT-TEEEEEEEC-TTCCTTT
T ss_pred CEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCC-CeEEEEEEc-CCccccC
Confidence 34445556679999999999988887753 45688999999985444443789999999875 344444443 22
Q ss_pred CceeEE-EeeCCCEEEEEc--CCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCC----------CcEE
Q 028802 82 NSVDAL-LKLDEDRVITGS--ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD----------SMLK 148 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~--~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------~~i~ 148 (203)
.....+ + ++..++++. .++.|.++|+.+++.+..+.... ....++++|+|++++++..+ +.|.
T Consensus 131 ~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~--~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~ 206 (328)
T 3dsm_A 131 GSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGI--QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLY 206 (328)
T ss_dssp CBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSS--CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEE
T ss_pred CCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCC--CccceEEcCCCCEEEEECCCccCCccccCCceEE
Confidence 134455 4 445555554 47899999999998887776542 45788999999877766554 7899
Q ss_pred EEeCCCccc
Q 028802 149 LWDLDDILK 157 (203)
Q Consensus 149 iwd~~~~~~ 157 (203)
+||..+...
T Consensus 207 ~id~~t~~v 215 (328)
T 3dsm_A 207 RIDAETFTV 215 (328)
T ss_dssp EEETTTTEE
T ss_pred EEECCCCeE
Confidence 999987654
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.3e-09 Score=90.45 Aligned_cols=149 Identities=15% Similarity=0.091 Sum_probs=101.0
Q ss_pred CcccccCCEEEEEcCCCe--------------EEEEEcCCCe----EEEeecCCcccEEEEEEeeCCCEEEEecCC----
Q 028802 1 MTFAADAMKLLGTSGDGT--------------LSVCNLRKNT----VQTRSEFSEEELTSVVLMKNGRKVVCGSQS---- 58 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~--------------i~v~d~~~~~----~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d---- 58 (203)
++|+|| +.|++++.++. |++|++.++. .+.....+...+..+.|+|||++|+..+.+
T Consensus 214 ~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~ 292 (741)
T 1yr2_A 214 LAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDP 292 (741)
T ss_dssp CEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCS
T ss_pred EEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCC
Confidence 479999 99988876543 8999987754 333333333458899999999998877654
Q ss_pred -CeEEEEEcCCcccc-ceeeecCCCCceeEEEeeCCCEEEEEcCC----CcEEEEEccCC--ceeeeeccCCCcceEEEE
Q 028802 59 -GTVLLYSWGYFKDC-SDRFVGLSPNSVDALLKLDEDRVITGSEN----GLISLVGILPN--RIIQPIAEHSEYPIESLA 130 (203)
Q Consensus 59 -~~i~v~d~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~l~~~~~d----g~v~v~d~~~~--~~~~~~~~~~~~~i~~~~ 130 (203)
..|++||+...... ...+.. +.......++|+|..|+..+.+ +.|.+|++.++ .....+..+ ...+..+.
T Consensus 293 ~~~l~~~d~~~~~~~~~~~l~~-~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~-~~~l~~~~ 370 (741)
T 1yr2_A 293 VNTVHVARVTNGKIGPVTALIP-DLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPES-KDNLESVG 370 (741)
T ss_dssp CCEEEEEEEETTEECCCEEEEC-SSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCC-SSEEEEEE
T ss_pred cceEEEEECCCCCCcccEEecC-CCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCC-CCeEEEEE
Confidence 38999998643113 455655 5555555557999998887763 45999998874 333334443 33566777
Q ss_pred EeCCCCeEEEEeCCCcEEEEeCC
Q 028802 131 LSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 131 ~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
|+ ++..+++...++..+||.+.
T Consensus 371 ~~-~~~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 371 IA-GNRLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp EE-BTEEEEEEEETTEEEEEEEE
T ss_pred EE-CCEEEEEEEECCEEEEEEEe
Confidence 77 55667777788877766543
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=4.2e-09 Score=77.32 Aligned_cols=147 Identities=5% Similarity=-0.060 Sum_probs=104.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEE-eecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcccccee-eec
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT-RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR-FVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~ 78 (203)
|+++|+++++++...++.|.+|+. ++.... ........+..+++.+++..+++....+.|.+||. . +..... +..
T Consensus 104 i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~-g~~~~~~~~~ 180 (299)
T 2z2n_A 104 ITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-S-GDITEFKIPT 180 (299)
T ss_dssp EEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-T-CCEEEEECSS
T ss_pred eEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-C-CcEEEeeCCC
Confidence 356788888887777889999998 554432 23334456889999999988887777789999997 3 333221 222
Q ss_pred CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeee-eccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQP-IAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
....+..+ +++++.++++....+.|.+|+. ++..... +..+ ...+.+++++++|+.+++...++.|.+||..
T Consensus 181 -~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 181 -PASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTP-NARPHAITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp -TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSST-TCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred -CCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCC-CCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence 33456677 7889987777667889999998 6654332 2222 2368899999999866666577899999984
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.5e-09 Score=84.05 Aligned_cols=150 Identities=14% Similarity=0.034 Sum_probs=101.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCC--eEEEEEcCCccccceee--
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSG--TVLLYSWGYFKDCSDRF-- 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~--~i~v~d~~~~~~~~~~~-- 76 (203)
|+|+|+++++++...++.|++||..++........... .. ++|+++++.|+++..++ .|.+|+.... .....+
T Consensus 136 la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~-~~~~~~g~ 212 (409)
T 3hrp_A 136 IAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASG-WAPTRIGQ 212 (409)
T ss_dssp EEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGT-TCEEEEEE
T ss_pred EEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCC-ceeEEeee
Confidence 57889998777777789999999988876555444332 33 89999999998888765 7888887532 222233
Q ss_pred --ecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeee----eccCCCcceE-EEEEeCC-CCeEEEEeCCCcE
Q 028802 77 --VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQP----IAEHSEYPIE-SLALSHD-RKFLGSISHDSML 147 (203)
Q Consensus 77 --~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~----~~~~~~~~i~-~~~~~~~-~~~l~~~~~d~~i 147 (203)
.. ....+..+ ++|++..|+++..++.|+.||+.++..... .......... .++|+|+ +..+++....+.|
T Consensus 213 ~~~~-~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I 291 (409)
T 3hrp_A 213 LGST-FSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSV 291 (409)
T ss_dssp CCTT-SCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEE
T ss_pred ccch-hcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEE
Confidence 21 22345566 799555666677788999999887654322 2222121113 8999996 5555555578899
Q ss_pred EEEeCCC
Q 028802 148 KLWDLDD 154 (203)
Q Consensus 148 ~iwd~~~ 154 (203)
+.|+...
T Consensus 292 ~~~~~~g 298 (409)
T 3hrp_A 292 YKITPDG 298 (409)
T ss_dssp EEECTTC
T ss_pred EEEecCC
Confidence 9999765
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=4.5e-12 Score=96.97 Aligned_cols=144 Identities=11% Similarity=0.097 Sum_probs=81.2
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCC-ce
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN-SV 84 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~-~v 84 (203)
++..|++++.|+.|+.||..+|+.+..+.. ..+.+..+..++..+++++.++.|+.||..+ ++.+..+.. +.. .+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~t-G~~~w~~~~-~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKN-NEGLTKLPF-TIPELV 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC------CCSEECSC-CHHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCC-Cceeeeeec-cCcccc
Confidence 577899999999999999999999888876 4455555566777888888999999999865 343333322 211 11
Q ss_pred eEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 85 DAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 85 ~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.+. +-..+..+++++.++.|+.||..+|+.+..+..+. ...++|++..|++++.++.|+.||.+++...
T Consensus 84 ~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~ 153 (369)
T 2hz6_A 84 QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-----ADSLSPSTSLLYLGRTEYTITMYDTKTRELR 153 (369)
T ss_dssp TTCSCC-----CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-----cccccccCCEEEEEecCCEEEEEECCCCCEE
Confidence 111 11134567788889999999999999988776552 1345678888999999999999999988654
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=7.8e-10 Score=91.17 Aligned_cols=151 Identities=9% Similarity=0.082 Sum_probs=97.3
Q ss_pred cccccCCEEEEEc-----CCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCC-------------eEEE
Q 028802 2 TFAADAMKLLGTS-----GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSG-------------TVLL 63 (203)
Q Consensus 2 ~~sp~~~~l~~~~-----~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~-------------~i~v 63 (203)
+|||||++||.+. ...+|++||+.+++.+... .+......++|+ |++.|+.++.+. .|++
T Consensus 135 ~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~ 212 (693)
T 3iuj_A 135 SFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYF 212 (693)
T ss_dssp EECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEE
T ss_pred EECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEE
Confidence 6999999988542 2357999999998764421 111113567999 999998887763 4999
Q ss_pred EEcCCccccceeeecCCCC----ceeEE-EeeCCCEEEEEcC----CCcEEEEEccCCc-eeeeeccCCCcceEEEEEeC
Q 028802 64 YSWGYFKDCSDRFVGLSPN----SVDAL-LKLDEDRVITGSE----NGLISLVGILPNR-IIQPIAEHSEYPIESLALSH 133 (203)
Q Consensus 64 ~d~~~~~~~~~~~~~~~~~----~v~~~-~~~~~~~l~~~~~----dg~v~v~d~~~~~-~~~~~~~~~~~~i~~~~~~~ 133 (203)
|++.+....-..+.. ... ....+ ++|+|++|+.... ...|+++|+.++. ....+..+.. ..... |++
T Consensus 213 ~~lgt~~~~~~~v~~-~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~-~~~~~-~~~ 289 (693)
T 3iuj_A 213 HRLGTAQEDDRLVFG-AIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLD-ADVSL-VDN 289 (693)
T ss_dssp EETTSCGGGCEEEES-CSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSS-SCEEE-EEE
T ss_pred EECCCCcccceEEEe-cCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCC-ceEEE-Eec
Confidence 998754322222322 222 24556 8999998875443 3479999987663 3444555533 34444 677
Q ss_pred CCCeEEEEe-C---CCcEEEEeCCCccc
Q 028802 134 DRKFLGSIS-H---DSMLKLWDLDDILK 157 (203)
Q Consensus 134 ~~~~l~~~~-~---d~~i~iwd~~~~~~ 157 (203)
+|..|+..+ . .+.|.++++.++..
T Consensus 290 ~g~~l~~~t~~~~~~~~l~~~d~~~~~~ 317 (693)
T 3iuj_A 290 KGSTLYLLTNRDAPNRRLVTVDAANPGP 317 (693)
T ss_dssp ETTEEEEEECTTCTTCEEEEEETTSCCG
T ss_pred cCCEEEEEECCCCCCCEEEEEeCCCCCc
Confidence 776665444 3 36799999987643
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-08 Score=78.27 Aligned_cols=142 Identities=8% Similarity=-0.131 Sum_probs=102.2
Q ss_pred cccCCEEEEEcC--CC---eEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEec----------CCCeEEEEEcCC
Q 028802 4 AADAMKLLGTSG--DG---TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS----------QSGTVLLYSWGY 68 (203)
Q Consensus 4 sp~~~~l~~~~~--d~---~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~----------~d~~i~v~d~~~ 68 (203)
.|+++++++... .. +|.+||..+++.+..+.....+ .++++||+++++++. .++.|.+||..+
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t 106 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT 106 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence 477887777653 23 8899999999988888764444 899999999999886 367899999864
Q ss_pred ccccceeeecCC-------CCceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeee-eccCCCcceEEEEEeCCC-C
Q 028802 69 FKDCSDRFVGLS-------PNSVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQP-IAEHSEYPIESLALSHDR-K 136 (203)
Q Consensus 69 ~~~~~~~~~~~~-------~~~v~~~-~~~~~~~l~~~~~--dg~v~v~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~-~ 136 (203)
...+..+.. . ......+ ++|+|+++++++. ++.|.++| .+++.+.. +... . ++.+.|++ +
T Consensus 107 -~~~~~~i~~-~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~----~~~~~~~~~~ 178 (373)
T 2mad_H 107 -FLPIADIEL-PDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T----CYHIHPGAPS 178 (373)
T ss_pred -CcEEEEEEC-CCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c----eEEEEeCCCc
Confidence 344444432 1 1223456 8999999999874 47899999 99988877 6543 2 24455655 3
Q ss_pred eEEEEeCCCcEEEEeCCCcc
Q 028802 137 FLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 137 ~l~~~~~d~~i~iwd~~~~~ 156 (203)
.+++.+.||.+.+++. ++.
T Consensus 179 ~~~~~~~dg~~~~vd~-~g~ 197 (373)
T 2mad_H 179 TFYLLCAQGGLAKTDH-AGG 197 (373)
T ss_pred eEEEEcCCCCEEEEEC-CCc
Confidence 4566668889999988 554
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.13 E-value=3.5e-09 Score=78.64 Aligned_cols=145 Identities=13% Similarity=0.019 Sum_probs=99.6
Q ss_pred cccccCC-EEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec--
Q 028802 2 TFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-- 78 (203)
Q Consensus 2 ~~sp~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-- 78 (203)
+|+|+++ ++++...++.|..|+. ++.. ..+..+...+..++++++|+++++...++.|.+|+.. +.. ..+..
T Consensus 51 ~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~--g~~-~~~~~~~ 125 (305)
T 3dr2_A 51 AWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD--GQA-HLLVGRY 125 (305)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT--SCE-EEEECEE
T ss_pred eEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC--CCE-EEEEecc
Confidence 6899998 5667777899999998 4443 3444455678899999999977776666889999874 232 22211
Q ss_pred --CCCCceeEE-EeeCCCEEEE----EcC-------------CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeE
Q 028802 79 --LSPNSVDAL-LKLDEDRVIT----GSE-------------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFL 138 (203)
Q Consensus 79 --~~~~~v~~~-~~~~~~~l~~----~~~-------------dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 138 (203)
.....+..+ ++|+|.++++ +.. .+.|+.|+..+++..... .. . ....++|+|+++.|
T Consensus 126 ~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~-~-~p~gl~~spdg~~l 202 (305)
T 3dr2_A 126 AGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DL-D-HPNGLAFSPDEQTL 202 (305)
T ss_dssp TTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EE-S-SEEEEEECTTSSEE
T ss_pred CCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cC-C-CCcceEEcCCCCEE
Confidence 011234566 8999998876 332 246777887666654433 22 2 56789999999988
Q ss_pred EEEeCC------CcEEEEeCCC
Q 028802 139 GSISHD------SMLKLWDLDD 154 (203)
Q Consensus 139 ~~~~~d------~~i~iwd~~~ 154 (203)
+.+... +.|.+|++..
T Consensus 203 yv~~~~~~~~~~~~i~~~~~~~ 224 (305)
T 3dr2_A 203 YVSQTPEQGHGSVEITAFAWRD 224 (305)
T ss_dssp EEEECCC---CCCEEEEEEEET
T ss_pred EEEecCCcCCCCCEEEEEEecC
Confidence 777654 6899999864
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.3e-08 Score=73.31 Aligned_cols=147 Identities=8% Similarity=0.027 Sum_probs=103.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEE-eecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT-RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG- 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~- 78 (203)
|+++++|+.+++...++.|.+|+.. ++... .+......+..+++.+++.++++...++.|.+||.. +.. ..+..
T Consensus 25 i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~--g~~-~~~~~~ 100 (300)
T 2qc5_A 25 ITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK--GGF-TEYPLP 100 (300)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT--SCE-EEEECS
T ss_pred eeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC--CCe-EEecCC
Confidence 3567888877777778999999987 54433 223334678899999999888877778889999875 232 22221
Q ss_pred CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceee-eeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQ-PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
.....+..+ +.+++.++++....+.|..++.. ++... .+... ...+..+++.++++.+++...++.|..|+..
T Consensus 101 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~-~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 175 (300)
T 2qc5_A 101 QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNK-GSYPAFITLGSDNALWFTENQNNSIGRITNT 175 (300)
T ss_dssp STTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSST-TCCEEEEEECTTSSEEEEETTTTEEEEECTT
T ss_pred CCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCC-CCCceeEEECCCCCEEEEecCCCeEEEECCC
Confidence 023456777 78899888877778889999987 55442 22222 2368899999999866666567889999873
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.12 E-value=3.1e-09 Score=78.66 Aligned_cols=138 Identities=9% Similarity=0.017 Sum_probs=91.0
Q ss_pred CcccccCCEEEEEcC-----------CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEE-EecCCCeEEEEEcC-
Q 028802 1 MTFAADAMKLLGTSG-----------DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWG- 67 (203)
Q Consensus 1 l~~sp~~~~l~~~~~-----------d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~-~~~~d~~i~v~d~~- 67 (203)
++++|+|+++++... .+.|+.++.. +.... +.........++|+|+++.|+ +.+..+.|.+|++.
T Consensus 103 i~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~ 180 (297)
T 3g4e_A 103 GKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDL 180 (297)
T ss_dssp EEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECT
T ss_pred EEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccC
Confidence 357888986665422 2344444433 33322 222334567899999998765 45557899999974
Q ss_pred Ccccc-----ceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEe-CCCCeEEE
Q 028802 68 YFKDC-----SDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALS-HDRKFLGS 140 (203)
Q Consensus 68 ~~~~~-----~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~ 140 (203)
..+.. ...+.. ....+..+ ++++|++.++....+.|.+||..+++.+..+..+.. .+++++|. |+++.|+.
T Consensus 181 ~~G~~~~~~~~~~~~~-~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~-~~t~~~f~g~d~~~L~v 258 (297)
T 3g4e_A 181 QTGQISNRRSVYKLEK-EEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVD-KTTSCCFGGKNYSEMYV 258 (297)
T ss_dssp TTCCEEEEEEEEECCG-GGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSS-BEEEEEEESGGGCEEEE
T ss_pred CCCcccCcEEEEECCC-CCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCC-CceEEEEeCCCCCEEEE
Confidence 22221 112222 23456677 789998877777778899999988998888877643 78999998 88887765
Q ss_pred Ee
Q 028802 141 IS 142 (203)
Q Consensus 141 ~~ 142 (203)
++
T Consensus 259 t~ 260 (297)
T 3g4e_A 259 TC 260 (297)
T ss_dssp EE
T ss_pred Ec
Confidence 54
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.9e-08 Score=72.78 Aligned_cols=147 Identities=6% Similarity=-0.034 Sum_probs=102.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEE-EeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce-eeec
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ-TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD-RFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~ 78 (203)
|+++++++++++...++.|.+|+.. ++.. ..+......+..+++.++++++++...++.|..|+.. +.... .+..
T Consensus 67 i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~~~~~ 143 (300)
T 2qc5_A 67 LIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD--GTIYEYDLPN 143 (300)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT--SCEEEEECSS
T ss_pred EEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC--CCEEEccCCC
Confidence 3567888877777767889999987 5443 2223234678899999999888877778889999875 23221 1222
Q ss_pred CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeee-eccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQP-IAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
....+..+ +.++++++++....+.|.+|+. +++.... .... ...+..++++++|+.+++....+.|.+|+..
T Consensus 144 -~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 217 (300)
T 2qc5_A 144 -KGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTN-AAAPVGITSGNDGALWFVEIMGNKIGRITTT 217 (300)
T ss_dssp -TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSST-TCCEEEEEECTTSSEEEEETTTTEEEEECTT
T ss_pred -CCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCC-CCCcceEEECCCCCEEEEccCCCEEEEEcCC
Confidence 23456777 7899997766666788999998 5554432 2222 2268899999999776666667789999973
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=7.2e-09 Score=85.46 Aligned_cols=151 Identities=7% Similarity=0.035 Sum_probs=102.8
Q ss_pred CcccccCCEEEEEcCCC-------------eEEEEEcCCCe----EEEeecC-CcccEEEEEEeeCCCEEEEecC----C
Q 028802 1 MTFAADAMKLLGTSGDG-------------TLSVCNLRKNT----VQTRSEF-SEEELTSVVLMKNGRKVVCGSQ----S 58 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~-------------~i~v~d~~~~~----~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~----d 58 (203)
++|+ |++.|+.++.+. .|++|++.++. ++..... +...+.++.|+|||++|+.... .
T Consensus 180 ~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 258 (693)
T 3iuj_A 180 ISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSG 258 (693)
T ss_dssp CEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSC
T ss_pred EEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCC
Confidence 5799 999998887764 49999987753 3333333 4455788999999998865432 3
Q ss_pred CeEEEEEcCCccccceeeecCCCCceeEEEeeCCCEEEEEcC----CCcEEEEEccCCce--eeeeccCCCcceEEEEEe
Q 028802 59 GTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSE----NGLISLVGILPNRI--IQPIAEHSEYPIESLALS 132 (203)
Q Consensus 59 ~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~----dg~v~v~d~~~~~~--~~~~~~~~~~~i~~~~~~ 132 (203)
+.|+++|+.........+.. +.......+++++..|+..+. .+.|.++++.++.. ...+..+.. .+. .|+
T Consensus 259 ~~i~~~d~~~~~~~~~~l~~-~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-~~~--~~s 334 (693)
T 3iuj_A 259 NRLYVKDLSQENAPLLTVQG-DLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ-QVL--TVH 334 (693)
T ss_dssp CEEEEEETTSTTCCCEEEEC-SSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS-SCE--EEE
T ss_pred cEEEEEECCCCCCceEEEeC-CCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC-CEE--EEE
Confidence 58999998754335566666 555555556777776665543 25799999887654 234545544 343 899
Q ss_pred CCCCeEEEEeC-CC--cEEEEeCCCcc
Q 028802 133 HDRKFLGSISH-DS--MLKLWDLDDIL 156 (203)
Q Consensus 133 ~~~~~l~~~~~-d~--~i~iwd~~~~~ 156 (203)
+++++|+.... ++ .|++|++.+..
T Consensus 335 ~~g~~lv~~~~~~g~~~l~~~d~~g~~ 361 (693)
T 3iuj_A 335 SGSGYLFAEYMVDATARVEQFDYEGKR 361 (693)
T ss_dssp EETTEEEEEEEETTEEEEEEECTTSCE
T ss_pred EECCEEEEEEEECCeeEEEEEECCCCe
Confidence 99998877664 43 68999987553
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.10 E-value=9.2e-09 Score=79.70 Aligned_cols=151 Identities=11% Similarity=0.014 Sum_probs=100.6
Q ss_pred CcccccCCEEEEEcCCC--eEEEEEcCCCeEEEee----cCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce
Q 028802 1 MTFAADAMKLLGTSGDG--TLSVCNLRKNTVQTRS----EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~--~i~v~d~~~~~~~~~~----~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~ 74 (203)
++|+|+++.|+++..++ .|.+++...+.....+ ......+.+++++|++..|+++..++.|+.||.... . ..
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~-~-~~ 253 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQ-E-VT 253 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTC-C-EE
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCC-C-EE
Confidence 57899999988887765 7999998765433333 224456788999995555655777889999998643 2 22
Q ss_pred ee-----ecCCCCce-e-EE-EeeC-CCEEEEEcCCCcEEEEEccCCceeeeeccCC--------------CcceEEEEE
Q 028802 75 RF-----VGLSPNSV-D-AL-LKLD-EDRVITGSENGLISLVGILPNRIIQPIAEHS--------------EYPIESLAL 131 (203)
Q Consensus 75 ~~-----~~~~~~~v-~-~~-~~~~-~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~--------------~~~i~~~~~ 131 (203)
.+ .+ ..... . .+ |+|+ +.++++-...+.|+.|+.... +..+.++. -.....+++
T Consensus 254 ~~~~~~~~g-~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~ 330 (409)
T 3hrp_A 254 LIKQLELSG-SLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTV 330 (409)
T ss_dssp EEEECCCCS-CCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEE
T ss_pred EEecccccC-CCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEE
Confidence 22 11 11111 2 67 8995 555555566788999987533 22332221 114788999
Q ss_pred eCCCCeEEEEe-CCCcEEEEeCCCcc
Q 028802 132 SHDRKFLGSIS-HDSMLKLWDLDDIL 156 (203)
Q Consensus 132 ~~~~~~l~~~~-~d~~i~iwd~~~~~ 156 (203)
+|+|+++++-. .++.|+.|++.++.
T Consensus 331 d~dG~lyvad~~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 331 DEDGNFYIVDGFKGYCLRKLDILDGY 356 (409)
T ss_dssp CTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred eCCCCEEEEeCCCCCEEEEEECCCCE
Confidence 99999777777 78999999976554
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=6.4e-10 Score=84.83 Aligned_cols=158 Identities=9% Similarity=-0.071 Sum_probs=108.6
Q ss_pred CcccccCCEEEEEc----------CCCeEEEEEcCCCeEEEeecCC-------cccEEEEEEeeCCCEEEEecC--CCeE
Q 028802 1 MTFAADAMKLLGTS----------GDGTLSVCNLRKNTVQTRSEFS-------EEELTSVVLMKNGRKVVCGSQ--SGTV 61 (203)
Q Consensus 1 l~~sp~~~~l~~~~----------~d~~i~v~d~~~~~~~~~~~~~-------~~~i~~l~~~~~~~~l~~~~~--d~~i 61 (203)
++++||+++++++. .++.|.+||+.+++.+..+..+ ......++++|||++++++.. ...+
T Consensus 70 i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v 149 (368)
T 1mda_H 70 AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAA 149 (368)
T ss_dssp EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEE
T ss_pred eEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeE
Confidence 47899999988875 3688999999999988887533 123457899999999888764 3567
Q ss_pred EE--EEcCC------c----------------------------------cccc--------------------------
Q 028802 62 LL--YSWGY------F----------------------------------KDCS-------------------------- 73 (203)
Q Consensus 62 ~v--~d~~~------~----------------------------------~~~~-------------------------- 73 (203)
.+ +|+.+ . +...
T Consensus 150 ~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs 229 (368)
T 1mda_H 150 GLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV 229 (368)
T ss_dssp EEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB
T ss_pred EEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEc
Confidence 77 76631 0 0000
Q ss_pred ----eeeecC-CC---------------------CceeEE-EeeCCCEEEEEcC-C--------CcEEEEEccCCceeee
Q 028802 74 ----DRFVGL-SP---------------------NSVDAL-LKLDEDRVITGSE-N--------GLISLVGILPNRIIQP 117 (203)
Q Consensus 74 ----~~~~~~-~~---------------------~~v~~~-~~~~~~~l~~~~~-d--------g~v~v~d~~~~~~~~~ 117 (203)
..+... .. .....+ ++|+++.++.+.. . ..+.++|+.+++.+..
T Consensus 230 ~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~ 309 (368)
T 1mda_H 230 ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP 309 (368)
T ss_dssp SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEEC
T ss_pred CCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEE
Confidence 000000 00 000114 7888888887643 2 3566999999999988
Q ss_pred eccCCCcceEEEEEeCCCCe-EEEEe-CCCcEEEEeCCCcccCCC
Q 028802 118 IAEHSEYPIESLALSHDRKF-LGSIS-HDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 118 ~~~~~~~~i~~~~~~~~~~~-l~~~~-~d~~i~iwd~~~~~~~~~ 160 (203)
+... . ....++|+|||++ +++.. .++.|.++|+.+.+....
T Consensus 310 i~vg-~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~ 352 (368)
T 1mda_H 310 ISNG-H-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSS 352 (368)
T ss_dssp CEEE-E-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEE
T ss_pred EECC-C-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEE
Confidence 8766 3 5789999999985 55666 589999999999875543
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.3e-08 Score=78.92 Aligned_cols=157 Identities=13% Similarity=0.130 Sum_probs=100.9
Q ss_pred CcccccCCEEEEEcC--CCeEEEEEcCCCeEEEeecCCcc-------cEEEEEEeeCCCEEEE-----------------
Q 028802 1 MTFAADAMKLLGTSG--DGTLSVCNLRKNTVQTRSEFSEE-------ELTSVVLMKNGRKVVC----------------- 54 (203)
Q Consensus 1 l~~sp~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~-------~i~~l~~~~~~~~l~~----------------- 54 (203)
++|+|||++|+++.. ++.|.++|+.+++.+..+..... .-..+.++++|+++++
T Consensus 182 ~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v 261 (426)
T 3c75_H 182 NALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHT 261 (426)
T ss_dssp SEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSC
T ss_pred EEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeecc
Confidence 578999999988764 57899999999988777754211 0111334444443333
Q ss_pred --------------------ecCCCeEEEEEcCCccc-cceeeec---------CCCCceeEE-EeeCCCEEEEEcC---
Q 028802 55 --------------------GSQSGTVLLYSWGYFKD-CSDRFVG---------LSPNSVDAL-LKLDEDRVITGSE--- 100 (203)
Q Consensus 55 --------------------~~~d~~i~v~d~~~~~~-~~~~~~~---------~~~~~v~~~-~~~~~~~l~~~~~--- 100 (203)
.+..+.+.+.|+..... .+..+.. ........+ ++|+++.+++...
T Consensus 262 ~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~ 341 (426)
T 3c75_H 262 EDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRD 341 (426)
T ss_dssp TTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECC
T ss_pred CCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccc
Confidence 23334445555431110 0011100 001111224 7899888777643
Q ss_pred -------CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCC-eEEEEe-CCCcEEEEeCCCcccCC
Q 028802 101 -------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSIS-HDSMLKLWDLDDILKGS 159 (203)
Q Consensus 101 -------dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~d~~i~iwd~~~~~~~~ 159 (203)
.+.|.++|+.+.+.+..+... . ....+.|+|||+ ++++.. .++.|.++|+.+.+...
T Consensus 342 ~gthk~~s~~VsVID~~T~kvv~~I~vg-~-~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~ 407 (426)
T 3c75_H 342 EWKHKAASRFVVVLNAETGERINKIELG-H-EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELR 407 (426)
T ss_dssp TTCTTSCEEEEEEEETTTCCEEEEEEEE-E-EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred cccccCCCCEEEEEECCCCeEEEEEECC-C-CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEE
Confidence 347999999999999888765 2 478999999999 888877 58999999999887553
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.08 E-value=3.9e-08 Score=72.75 Aligned_cols=152 Identities=9% Similarity=0.046 Sum_probs=97.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC----CcccEEEEEEeeCCCEEEEecCC---------CeEEEEEcC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF----SEEELTSVVLMKNGRKVVCGSQS---------GTVLLYSWG 67 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~----~~~~i~~l~~~~~~~~l~~~~~d---------~~i~v~d~~ 67 (203)
++++|+|+++++. ++.|.+||..+++....... ....+..++++|+|+++++.... ....+|.+.
T Consensus 59 i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d 136 (297)
T 3g4e_A 59 VALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLF 136 (297)
T ss_dssp EEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEEC
T ss_pred EEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEE
Confidence 4688999955554 46899999988765432221 23457899999999976654221 233455544
Q ss_pred CccccceeeecCCCCceeEE-EeeCCCEEEEE-cCCCcEEEEEc--cCCce-----eeeeccCCCcceEEEEEeCCCCeE
Q 028802 68 YFKDCSDRFVGLSPNSVDAL-LKLDEDRVITG-SENGLISLVGI--LPNRI-----IQPIAEHSEYPIESLALSHDRKFL 138 (203)
Q Consensus 68 ~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~-~~dg~v~v~d~--~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l 138 (203)
..+... .+.. .......+ |+|+++.++.+ +..+.|.+|++ .++.. +..+..+.. .+..++++++|++.
T Consensus 137 ~~g~~~-~~~~-~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~-~p~g~~~d~~G~lw 213 (297)
T 3g4e_A 137 PDHHVK-KYFD-QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQ-IPDGMCIDAEGKLW 213 (297)
T ss_dssp TTSCEE-EEEE-EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGC-EEEEEEEBTTSCEE
T ss_pred CCCCEE-EEee-ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCC-CCCeeEECCCCCEE
Confidence 323322 2322 33445667 89999877554 55788999987 44543 222222212 57889999999877
Q ss_pred EEEeCCCcEEEEeCCCccc
Q 028802 139 GSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 139 ~~~~~d~~i~iwd~~~~~~ 157 (203)
++....+.|.+||..++..
T Consensus 214 va~~~~~~v~~~d~~tG~~ 232 (297)
T 3g4e_A 214 VACYNGGRVIRLDPVTGKR 232 (297)
T ss_dssp EEEETTTEEEEECTTTCCE
T ss_pred EEEcCCCEEEEEcCCCceE
Confidence 7777788899999986543
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.02 E-value=5e-08 Score=72.18 Aligned_cols=150 Identities=10% Similarity=0.082 Sum_probs=97.7
Q ss_pred Cccccc-CCEEEEEcCCCeEEEEEcCCCeEEEe-ecC----CcccEEEEEEeeCCCEEEEecCC---------------C
Q 028802 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTR-SEF----SEEELTSVVLMKNGRKVVCGSQS---------------G 59 (203)
Q Consensus 1 l~~sp~-~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~----~~~~i~~l~~~~~~~~l~~~~~d---------------~ 59 (203)
++++++ ++++++.. .+.|.+|+.. ++.... ... ....+.+++++++++++++...+ +
T Consensus 76 i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ 153 (314)
T 1pjx_A 76 CQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFG 153 (314)
T ss_dssp EEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred EEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCC
Confidence 357788 66555544 4579999988 665433 221 12357899999999888776654 4
Q ss_pred eEEEEEcCCccccceeeecCCCCceeEE-Ee----eCCCEEEEE-cCCCcEEEEEcc-CCc-----eeeeeccCCCcceE
Q 028802 60 TVLLYSWGYFKDCSDRFVGLSPNSVDAL-LK----LDEDRVITG-SENGLISLVGIL-PNR-----IIQPIAEHSEYPIE 127 (203)
Q Consensus 60 ~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~----~~~~~l~~~-~~dg~v~v~d~~-~~~-----~~~~~~~~~~~~i~ 127 (203)
.|..|+.. +... .+.. .......+ ++ |+++.++.+ ..++.|.+|++. ++. ....+..+....+.
T Consensus 154 ~l~~~~~~--g~~~-~~~~-~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~ 229 (314)
T 1pjx_A 154 SIYCFTTD--GQMI-QVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD 229 (314)
T ss_dssp EEEEECTT--SCEE-EEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEE
T ss_pred eEEEECCC--CCEE-Eecc-CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCC
Confidence 66666653 3332 2222 23345666 78 998766555 567899999986 443 22233333102578
Q ss_pred EEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 128 SLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 128 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
.++++++|+.+++...++.|.+||..++.
T Consensus 230 ~i~~d~~G~l~v~~~~~~~i~~~d~~~g~ 258 (314)
T 1pjx_A 230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQ 258 (314)
T ss_dssp EEEEBTTCCEEEEEETTTEEEEECTTCBS
T ss_pred ceEECCCCCEEEEEcCCCEEEEEcCCCCc
Confidence 89999999888887788899999987543
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=7.6e-08 Score=69.95 Aligned_cols=153 Identities=9% Similarity=0.053 Sum_probs=103.9
Q ss_pred CcccccCCEEEEEcC--CCeEEEEEcCCCeEEEeecCCcc-cEEEEEEeeCCCEEEEec-CCCeEEEEEcCCccccceee
Q 028802 1 MTFAADAMKLLGTSG--DGTLSVCNLRKNTVQTRSEFSEE-ELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~-~i~~l~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~ 76 (203)
|+|+|++.++++.+. ++.|.++|+.+++.+..+..... ....+++ ++..|+.+. .++.+.++|..+ .+.+..+
T Consensus 26 l~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~--~g~~lyv~t~~~~~v~viD~~t-~~v~~~i 102 (266)
T 2iwa_A 26 LVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTL--LNEKLYQVVWLKNIGFIYDRRT-LSNIKNF 102 (266)
T ss_dssp EEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEETTCSEEEEEETTT-TEEEEEE
T ss_pred EEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEE--eCCEEEEEEecCCEEEEEECCC-CcEEEEE
Confidence 468888654444432 58999999999998887753221 2234444 455665554 578999999875 4566666
Q ss_pred ecCC-CCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCC----cceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028802 77 VGLS-PNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE----YPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 77 ~~~~-~~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~d~~i~iwd 151 (203)
.. . ... +. ++++|+.++.+..++.|.++|..+.+.+..+..... ..+..+.|. +|...+....++.|.+.|
T Consensus 103 ~~-g~~~g-~g-lt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID 178 (266)
T 2iwa_A 103 TH-QMKDG-WG-LATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARIS 178 (266)
T ss_dssp EC-CSSSC-CE-EEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEE
T ss_pred EC-CCCCe-EE-EEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEE
Confidence 54 3 211 22 577888888888889999999999888877754311 135678888 675444544678999999
Q ss_pred CCCcccCCC
Q 028802 152 LDDILKGSG 160 (203)
Q Consensus 152 ~~~~~~~~~ 160 (203)
..++.....
T Consensus 179 ~~tg~V~~~ 187 (266)
T 2iwa_A 179 AKDGTLLGW 187 (266)
T ss_dssp TTTCCEEEE
T ss_pred CCCCcEEEE
Confidence 999875433
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=2e-07 Score=69.85 Aligned_cols=146 Identities=7% Similarity=0.073 Sum_probs=94.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC----CcccEEEEEEeeCCCEEEEecC------CCeEEEEEcCCcc
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF----SEEELTSVVLMKNGRKVVCGSQ------SGTVLLYSWGYFK 70 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~----~~~~i~~l~~~~~~~~l~~~~~------d~~i~v~d~~~~~ 70 (203)
++|+|+|+++++. . ..|.+||..+++....... ....+..++++|+|+++++... .+.|..++ . +
T Consensus 95 i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~--g 169 (326)
T 2ghs_A 95 LAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-K--G 169 (326)
T ss_dssp EEEEETTEEEEEE-T-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-T--T
T ss_pred EEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-C--C
Confidence 3578888877765 3 4599999988765432221 1246889999999997665432 24555555 2 3
Q ss_pred ccceeeecCCCCceeEE-EeeCCCEEEEE-cCCCcEEEEEcc--CC-ce-----eeeeccCCCcceEEEEEeCCCCeEEE
Q 028802 71 DCSDRFVGLSPNSVDAL-LKLDEDRVITG-SENGLISLVGIL--PN-RI-----IQPIAEHSEYPIESLALSHDRKFLGS 140 (203)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~~~~~l~~~-~~dg~v~v~d~~--~~-~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~ 140 (203)
.. ..+.. .......+ |+|+++.++.+ ...+.|.+|++. ++ .. +..+..... .+..++++++|.++++
T Consensus 170 ~~-~~~~~-~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~-~p~gi~~d~~G~lwva 246 (326)
T 2ghs_A 170 KV-TKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKG-GMDGSVCDAEGHIWNA 246 (326)
T ss_dssp EE-EEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSS-EEEEEEECTTSCEEEE
T ss_pred cE-EEeeC-CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCC-CCCeeEECCCCCEEEE
Confidence 32 22322 33345567 89999877655 456889999986 55 31 222222222 5678999999987777
Q ss_pred EeCCCcEEEEeCCC
Q 028802 141 ISHDSMLKLWDLDD 154 (203)
Q Consensus 141 ~~~d~~i~iwd~~~ 154 (203)
...++.|.+|+...
T Consensus 247 ~~~~~~v~~~d~~g 260 (326)
T 2ghs_A 247 RWGEGAVDRYDTDG 260 (326)
T ss_dssp EETTTEEEEECTTC
T ss_pred EeCCCEEEEECCCC
Confidence 66678899999843
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.95 E-value=4.7e-08 Score=75.86 Aligned_cols=113 Identities=9% Similarity=-0.090 Sum_probs=85.5
Q ss_pred ccCCEEEEEcC-C----CeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEec----------CCCeEEEEEcCCc
Q 028802 5 ADAMKLLGTSG-D----GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS----------QSGTVLLYSWGYF 69 (203)
Q Consensus 5 p~~~~l~~~~~-d----~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~----------~d~~i~v~d~~~~ 69 (203)
|+++.++++.. + +.|.++|..+++.+..+.....+ .++++|++++|+++. .++.|.++|..+
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t- 158 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT- 158 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT-
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC-
Confidence 46676666544 2 69999999999999988765555 899999999888876 367899999975
Q ss_pred cccceeeecCC-------CCceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeeeeccC
Q 028802 70 KDCSDRFVGLS-------PNSVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQPIAEH 121 (203)
Q Consensus 70 ~~~~~~~~~~~-------~~~v~~~-~~~~~~~l~~~~~--dg~v~v~d~~~~~~~~~~~~~ 121 (203)
.+.+..+.. . ......+ ++|+|++++++.. .+.|.++|+.+++.+..+...
T Consensus 159 ~~vv~~I~v-~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~ 219 (426)
T 3c75_H 159 FLPIADIEL-PDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVP 219 (426)
T ss_dssp CCEEEEEEE-TTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC
T ss_pred CcEEEEEEC-CCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcC
Confidence 355555432 1 1223445 8999999999874 578999999999988887653
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.2e-08 Score=73.42 Aligned_cols=143 Identities=7% Similarity=0.042 Sum_probs=92.6
Q ss_pred CcccccCCEEEE----EcC-------------CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCC-----
Q 028802 1 MTFAADAMKLLG----TSG-------------DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS----- 58 (203)
Q Consensus 1 l~~sp~~~~l~~----~~~-------------d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d----- 58 (203)
++++|+|+++++ |.. .+.|+.|+..+++..... .......++|+|+++.|+++...
T Consensus 136 i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~ 213 (305)
T 3dr2_A 136 LIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHG 213 (305)
T ss_dssp EEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---C
T ss_pred EEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCC
Confidence 357888987776 332 256788887666543332 33456789999999988777654
Q ss_pred -CeEEEEEcCCccc-cceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCC
Q 028802 59 -GTVLLYSWGYFKD-CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR 135 (203)
Q Consensus 59 -~~i~v~d~~~~~~-~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 135 (203)
+.|.+|++...+. ....+.......+..+ +.++|++. +++.+ .|.+|+. .++.+..+..+ . .+.+++|.|++
T Consensus 214 ~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lw-v~~~~-gv~~~~~-~g~~~~~~~~~-~-~~~~~~f~~d~ 288 (305)
T 3dr2_A 214 SVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLW-SSSGT-GVCVFDS-DGQLLGHIPTP-G-TASNCTFDQAQ 288 (305)
T ss_dssp CCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEE-ECCSS-EEEEECT-TSCEEEEEECS-S-CCCEEEECTTS
T ss_pred CCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEE-EecCC-cEEEECC-CCCEEEEEECC-C-ceeEEEEeCCC
Confidence 6899999864220 0111111012334456 78899844 44444 4999997 57777777665 3 57889999999
Q ss_pred CeEEEEeCCCcEEEEe
Q 028802 136 KFLGSISHDSMLKLWD 151 (203)
Q Consensus 136 ~~l~~~~~d~~i~iwd 151 (203)
+.|+.++.+ .|+.++
T Consensus 289 ~~L~it~~~-~l~~~~ 303 (305)
T 3dr2_A 289 QRLFITGGP-CLWMLP 303 (305)
T ss_dssp CEEEEEETT-EEEEEE
T ss_pred CEEEEEcCC-eEEEEE
Confidence 888887765 444444
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.93 E-value=2.1e-08 Score=76.68 Aligned_cols=151 Identities=12% Similarity=0.011 Sum_probs=101.2
Q ss_pred CcccccCCEEEEEc----------CCCeEEEEEcCCCeEEEeecCCc-------ccEEEEEEeeCCCEEEEecC--CCeE
Q 028802 1 MTFAADAMKLLGTS----------GDGTLSVCNLRKNTVQTRSEFSE-------EELTSVVLMKNGRKVVCGSQ--SGTV 61 (203)
Q Consensus 1 l~~sp~~~~l~~~~----------~d~~i~v~d~~~~~~~~~~~~~~-------~~i~~l~~~~~~~~l~~~~~--d~~i 61 (203)
|++||||++|+++. .++.|.+||..+.+.+..+.... .....++++|||++++++.. ++.|
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V 162 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV 162 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE
Confidence 47899999887765 36789999999998887774321 23557899999999988864 6899
Q ss_pred EEEEcCCccccceeeecCCCCceeEEEeeCCCEEEEEcCCCcEEEEEccC-CceeeeeccCC---CcceE-EEEEe-CCC
Q 028802 62 LLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILP-NRIIQPIAEHS---EYPIE-SLALS-HDR 135 (203)
Q Consensus 62 ~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~-~~~~~~~~~~~---~~~i~-~~~~~-~~~ 135 (203)
.++|+.+ .+.+..+.. .+ ...++....+.+++.+.||.+.+.++.+ ++........- ..++. ...|. ++|
T Consensus 163 sVID~~t-~~vv~tI~v--~g-~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG 238 (386)
T 3sjl_D 163 GVVDLEG-KAFKRMLDV--PD-CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG 238 (386)
T ss_dssp EEEETTT-TEEEEEEEC--CS-EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT
T ss_pred EEEECCC-CcEEEEEEC--CC-cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC
Confidence 9999975 466666653 22 1222333456677888899988888876 55432211110 11222 24665 677
Q ss_pred CeEEEEeCCCcEEEEeCCCcc
Q 028802 136 KFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 136 ~~l~~~~~d~~i~iwd~~~~~ 156 (203)
++++ .+.++.+++.|+.+..
T Consensus 239 ~~~~-vs~~g~V~v~d~~~~~ 258 (386)
T 3sjl_D 239 RLVW-PTYTGKIHQIDLSSGD 258 (386)
T ss_dssp EEEE-EBTTSEEEEEECTTSS
T ss_pred cEEE-EeCCCEEEEEECCCCc
Confidence 5544 5558999999997653
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.92 E-value=1.8e-07 Score=70.13 Aligned_cols=136 Identities=13% Similarity=0.061 Sum_probs=88.9
Q ss_pred CcccccCCEEEEEcC------CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEe-cCCCeEEEEEcC-Ccc-c
Q 028802 1 MTFAADAMKLLGTSG------DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWG-YFK-D 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~------d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~d~~i~v~d~~-~~~-~ 71 (203)
++++|+|+++++... .+.|+.++ +++... +.........++|+|+++.|+.+ +.++.|.+|++. ..+ .
T Consensus 139 i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~ 215 (326)
T 2ghs_A 139 GRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLP 215 (326)
T ss_dssp EEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCB
T ss_pred EEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCc
Confidence 357889987665432 25666666 454432 22223456789999999877554 457899999985 122 1
Q ss_pred c--ceee---ecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEe-CCCCeEEEEe
Q 028802 72 C--SDRF---VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALS-HDRKFLGSIS 142 (203)
Q Consensus 72 ~--~~~~---~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~ 142 (203)
. ...+ .. ....+..+ +.++|.++++....+.|.+|+. +++.+..+..+.. .+++++|. +++..|++++
T Consensus 216 ~~~~~~~~~~~~-~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~-~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 216 TGKAEVFIDSTG-IKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGK-QTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp SSCCEEEEECTT-SSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCS-BEEEEEEESTTSCEEEEEE
T ss_pred ccCceEEEECCC-CCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCC-CcEEEEEecCCCCEEEEEe
Confidence 1 1122 22 23445666 7889987777666788999998 5777777766633 68999998 8888776554
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.90 E-value=9.3e-08 Score=78.83 Aligned_cols=154 Identities=10% Similarity=0.054 Sum_probs=105.0
Q ss_pred cccccCCEEEEEcCCCe-------------------EEEEEcCCCeEEEeecC--Cc-------ccEEEEEEeeCCC---
Q 028802 2 TFAADAMKLLGTSGDGT-------------------LSVCNLRKNTVQTRSEF--SE-------EELTSVVLMKNGR--- 50 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~-------------------i~v~d~~~~~~~~~~~~--~~-------~~i~~l~~~~~~~--- 50 (203)
+++|+..+|++++.++. |..+|..+|+.+..++. |. .++.......+|.
T Consensus 241 ~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~ 320 (689)
T 1yiq_A 241 AYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRK 320 (689)
T ss_dssp EEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEE
T ss_pred eEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEE
Confidence 45677888888887764 99999999999887753 21 1222223334565
Q ss_pred EEEEecCCCeEEEEEcCCccccceeeecCC---------------------------C----------C-ceeEE-EeeC
Q 028802 51 KVVCGSQSGTVLLYSWGYFKDCSDRFVGLS---------------------------P----------N-SVDAL-LKLD 91 (203)
Q Consensus 51 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~---------------------------~----------~-~v~~~-~~~~ 91 (203)
.++.++.+|.++++|..+ ++.+....-.. . . ....+ ++|+
T Consensus 321 ~v~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~ 399 (689)
T 1yiq_A 321 VLMQAPKNGFFYVIDRAT-GELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPD 399 (689)
T ss_dssp EEEECCTTSEEEEEETTT-CCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETT
T ss_pred EEEEECCCCeEEEEECCC-CCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCC
Confidence 788899999999999875 34432111000 0 0 01113 6777
Q ss_pred CCEEEEEcC---------------------------------------------CCcEEEEEccCCceeeeeccCCCcce
Q 028802 92 EDRVITGSE---------------------------------------------NGLISLVGILPNRIIQPIAEHSEYPI 126 (203)
Q Consensus 92 ~~~l~~~~~---------------------------------------------dg~v~v~d~~~~~~~~~~~~~~~~~i 126 (203)
..++++... +|.|+.||+.+++.+..+..+. ++
T Consensus 400 ~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~--~~ 477 (689)
T 1yiq_A 400 TGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT--IF 477 (689)
T ss_dssp TTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS--SC
T ss_pred CCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC--Cc
Confidence 777776522 3779999999999998887663 34
Q ss_pred EEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 127 ESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 127 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
....+...+..+++++.|+.|+.||.++++..
T Consensus 478 ~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 478 NGGTLSTAGNLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp CCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence 44466677889999999999999999998654
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=1e-10 Score=89.41 Aligned_cols=144 Identities=11% Similarity=0.003 Sum_probs=78.2
Q ss_pred cccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcc-cEE-EEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCC
Q 028802 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE-ELT-SVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 4 sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-~i~-~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 81 (203)
.+++..+++++.|+.|+.||..+++.+.....+.. .+. +..+. .+..|++++.++.++.||..+ ++.+..+.. +.
T Consensus 46 ~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~t-G~~~w~~~~-~~ 122 (369)
T 2hz6_A 46 HVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLT-GEKQQTLSS-AF 122 (369)
T ss_dssp ----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC--------------
T ss_pred EcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCC-CcEEEEecC-CC
Confidence 34666777778999999999988877665543321 110 01111 345677888899999999975 454444443 22
Q ss_pred CceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCC---CeEEEEeCCCcEEEEeCCCccc
Q 028802 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR---KFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
.. ++|++..+++++.++.|+.||..+|+.+..+..+ .....++.++. ..+++++.++.|+.||..++..
T Consensus 123 ----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~---~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 123 ----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF---DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp --------------EEEEEEEEEEECCCSSSSSCCCEEEEE---EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred ----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc---cccCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence 12 5678889999999999999999999887665432 12223344432 5677788899999999988764
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.6e-07 Score=69.73 Aligned_cols=149 Identities=12% Similarity=0.104 Sum_probs=93.7
Q ss_pred CcccccCCEEEEEcC--CCeEEEEEcCCCeEEEeec-------CCcccEEEEEEeeCCCEEEEecC-----CCeEEEEEc
Q 028802 1 MTFAADAMKLLGTSG--DGTLSVCNLRKNTVQTRSE-------FSEEELTSVVLMKNGRKVVCGSQ-----SGTVLLYSW 66 (203)
Q Consensus 1 l~~sp~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~-------~~~~~i~~l~~~~~~~~l~~~~~-----d~~i~v~d~ 66 (203)
|+++|+|+.+++... ++.++||.+.+++.. .+. .+-..+..++++++++++++-.. ...|.+||+
T Consensus 22 va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~ 100 (343)
T 2qe8_A 22 ITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDT 100 (343)
T ss_dssp EEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEET
T ss_pred EEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEEC
Confidence 468899998888632 342444544455433 221 23457899999999876665433 578999998
Q ss_pred CCccccceeeec-----CCCCceeEE-EeeCCCEEEEE-c---CCCcEEEEEccCCceeeeeccCC--------------
Q 028802 67 GYFKDCSDRFVG-----LSPNSVDAL-LKLDEDRVITG-S---ENGLISLVGILPNRIIQPIAEHS-------------- 122 (203)
Q Consensus 67 ~~~~~~~~~~~~-----~~~~~v~~~-~~~~~~~l~~~-~---~dg~v~v~d~~~~~~~~~~~~~~-------------- 122 (203)
.+ +..+..+.. .+...+..+ ++|++..++.+ . .++.|.+||+.+++....+..|.
T Consensus 101 ~t-g~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~ 179 (343)
T 2qe8_A 101 LN-NQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGV 179 (343)
T ss_dssp TT-TEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTE
T ss_pred CC-CeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCE
Confidence 64 344444432 012235667 78765555444 3 57889999998877655443310
Q ss_pred --------------CcceEEEEEeCCCCeEEEEeCCC-cEEEEe
Q 028802 123 --------------EYPIESLALSHDRKFLGSISHDS-MLKLWD 151 (203)
Q Consensus 123 --------------~~~i~~~~~~~~~~~l~~~~~d~-~i~iwd 151 (203)
...+..|+|+|++++|+++...+ .|..++
T Consensus 180 ~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~ 223 (343)
T 2qe8_A 180 PVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK 223 (343)
T ss_dssp ECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred EEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence 01357899999999988887655 555554
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.8e-07 Score=72.47 Aligned_cols=149 Identities=11% Similarity=0.017 Sum_probs=101.3
Q ss_pred cccccCCEEEEEcCC------CeEEEEEcCCCeEEEeecCCcc---cEEEEEEeeCCCEEEEec----------------
Q 028802 2 TFAADAMKLLGTSGD------GTLSVCNLRKNTVQTRSEFSEE---ELTSVVLMKNGRKVVCGS---------------- 56 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~~---~i~~l~~~~~~~~l~~~~---------------- 56 (203)
..+|+| .++++..+ +.|.++|..+.+.+..+..... --..+.|+|+++.++++.
T Consensus 144 ~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~ 222 (462)
T 2ece_A 144 HCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHL 222 (462)
T ss_dssp EECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTH
T ss_pred eECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhh
Confidence 356888 66665444 7899999999999888863322 234578899999988885
Q ss_pred ---CCCeEEEEEcCCccccceeeecCCC--CceeEE---EeeCCCEEEEEcC------CCcEEEEEccCCce--eeee--
Q 028802 57 ---QSGTVLLYSWGYFKDCSDRFVGLSP--NSVDAL---LKLDEDRVITGSE------NGLISLVGILPNRI--IQPI-- 118 (203)
Q Consensus 57 ---~d~~i~v~d~~~~~~~~~~~~~~~~--~~v~~~---~~~~~~~l~~~~~------dg~v~v~d~~~~~~--~~~~-- 118 (203)
...+|.+||+.. .+.+..+.. .. .....+ ++|+++++++++. ++.|.+|....+.. ++.+
T Consensus 223 ~~~~~d~V~v~D~~~-~k~~~tI~v-g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi 300 (462)
T 2ece_A 223 KDRYGNRIHFWDLRK-RKRIHSLTL-GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEI 300 (462)
T ss_dssp HHHSCCEEEEEETTT-TEEEEEEES-CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEE
T ss_pred hhccCCEEEEEECCC-CcEeeEEec-CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeC
Confidence 368999999975 455666554 21 223334 4999999888875 55777665543321 1111
Q ss_pred ccC---------------CCcceEEEEEeCCCCeEEEEe-CCCcEEEEeCC
Q 028802 119 AEH---------------SEYPIESLALSHDRKFLGSIS-HDSMLKLWDLD 153 (203)
Q Consensus 119 ~~~---------------~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~ 153 (203)
... .......|.++|||++|+++. ..+.|.+||+.
T Consensus 301 ~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 301 PAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp CCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred CCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 000 012467899999999998777 57899999985
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.5e-07 Score=71.69 Aligned_cols=145 Identities=10% Similarity=0.042 Sum_probs=99.9
Q ss_pred ccCCEEEE-EcCCCeEEEEEcCCC----eEEEeec-------CCcccEEEEEEeeCCCEEEEecCC------CeEEEEEc
Q 028802 5 ADAMKLLG-TSGDGTLSVCNLRKN----TVQTRSE-------FSEEELTSVVLMKNGRKVVCGSQS------GTVLLYSW 66 (203)
Q Consensus 5 p~~~~l~~-~~~d~~i~v~d~~~~----~~~~~~~-------~~~~~i~~l~~~~~~~~l~~~~~d------~~i~v~d~ 66 (203)
+++++|++ +..++.|+|+|+.+. +...+++ ........+..+|+| .++++..+ +.+.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 77887755 566889999998754 6666663 122356677888999 66665544 78999998
Q ss_pred CCccccceeeecCCCCc---eeEE-EeeCCCEEEEEc-------------------CCCcEEEEEccCCceeeeeccCC-
Q 028802 67 GYFKDCSDRFVGLSPNS---VDAL-LKLDEDRVITGS-------------------ENGLISLVGILPNRIIQPIAEHS- 122 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~~~---v~~~-~~~~~~~l~~~~-------------------~dg~v~v~d~~~~~~~~~~~~~~- 122 (203)
.+ .+.+..+.. ...+ -..+ |+|+++.+++.. ....|.+||+.+++.+.++....
T Consensus 172 ~T-~~v~~~~~~-~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~ 249 (462)
T 2ece_A 172 YS-FEPLGKWEI-DRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE 249 (462)
T ss_dssp TT-CCEEEECCS-BCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT
T ss_pred CC-CeEEEEEcc-CCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC
Confidence 75 456666653 2221 2345 799999988885 36789999999988888876641
Q ss_pred CcceEEEEE--eCCCCeEEEEe------CCCcEEEEeC
Q 028802 123 EYPIESLAL--SHDRKFLGSIS------HDSMLKLWDL 152 (203)
Q Consensus 123 ~~~i~~~~~--~~~~~~l~~~~------~d~~i~iwd~ 152 (203)
+.....+.| +|+++++++++ .+++|.+|..
T Consensus 250 g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~ 287 (462)
T 2ece_A 250 NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFY 287 (462)
T ss_dssp EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEE
T ss_pred CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEe
Confidence 223445655 99999987666 4567766544
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.85 E-value=2.5e-07 Score=66.74 Aligned_cols=151 Identities=9% Similarity=0.080 Sum_probs=103.2
Q ss_pred cccccCCEEEEEcCCC--eEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEec-CCCeEEEEEcCCccccceeeec
Q 028802 2 TFAADAMKLLGTSGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~--~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
.|+ ++.++.+++.+| .|+++|+.+++.+..+.... ......+.+++..|+... .++.+.+||..+ .+.+..+..
T Consensus 49 ~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t-~~~~~ti~~ 125 (262)
T 3nol_A 49 FYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRN-LRQVRSFNY 125 (262)
T ss_dssp EEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTT-CCEEEEEEC
T ss_pred EEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECcc-CcEEEEEEC
Confidence 466 565556666655 89999999999888776533 343444445566666655 488999999975 466666664
Q ss_pred CCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC-C---cceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 79 LSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS-E---YPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 79 ~~~~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~-~---~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
.... +. +++++..|+.+...+.|+++|..+.+.+..+.... + ..+..+.|. +|+..+..-.+..|.+.|.++
T Consensus 126 -~~eG-~g-lt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~t 201 (262)
T 3nol_A 126 -DGEG-WG-LTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPET 201 (262)
T ss_dssp -SSCC-CC-EEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTT
T ss_pred -CCCc-eE-EecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCC
Confidence 3221 22 45778888877778889999999998887775531 1 134557776 675555444688999999998
Q ss_pred cccCC
Q 028802 155 ILKGS 159 (203)
Q Consensus 155 ~~~~~ 159 (203)
+....
T Consensus 202 G~V~~ 206 (262)
T 3nol_A 202 GKVTG 206 (262)
T ss_dssp CBEEE
T ss_pred CcEEE
Confidence 87543
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.82 E-value=3.1e-07 Score=66.34 Aligned_cols=146 Identities=12% Similarity=-0.010 Sum_probs=99.9
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEe-cCCCeEEEEEcCCccccceeeecCCCCcee
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~ 85 (203)
+.++.+.+.+|.|+++|+.+++.+..+ .. .........+++..|+.. -.++.+.+||..+ .+.+..+.. .... +
T Consensus 65 ~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~T-l~~~~ti~~-~~eG-w 139 (268)
T 3nok_A 65 GHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGERLYQLTWTEGLLFTWSGMP-PQRERTTRY-SGEG-W 139 (268)
T ss_dssp TEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSSCEEEEESSSCEEEEEETTT-TEEEEEEEC-SSCC-C
T ss_pred CEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCCEEEEEEccCCEEEEEECCc-CcEEEEEeC-CCce-e
Confidence 455567778889999999999887776 32 333333334455555544 4588999999975 466666664 3222 2
Q ss_pred EEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCC----cceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028802 86 ALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE----YPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 86 ~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
. ++++++.|+.+...+.|+++|..+.+.+..+..... ..+..+.|. +|+..+....+..|.+.|.+++....
T Consensus 140 G-Lt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~ 215 (268)
T 3nok_A 140 G-LCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVG 215 (268)
T ss_dssp C-EEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEE
T ss_pred E-EecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEE
Confidence 2 357788888888889999999999988877754321 134667776 77544444467899999999887543
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.7e-07 Score=77.16 Aligned_cols=154 Identities=10% Similarity=0.088 Sum_probs=107.6
Q ss_pred cccccCCEEEEEcCCC-------------------eEEEEEcCCCeEEEeecC--Cc-------ccEEEEEEeeCC---C
Q 028802 2 TFAADAMKLLGTSGDG-------------------TLSVCNLRKNTVQTRSEF--SE-------EELTSVVLMKNG---R 50 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~-------------------~i~v~d~~~~~~~~~~~~--~~-------~~i~~l~~~~~~---~ 50 (203)
+++|++.+|+.++.++ .|..+|..+|+.+..++. |. .....+....+| .
T Consensus 249 ~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~ 328 (677)
T 1kb0_A 249 TFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRK 328 (677)
T ss_dssp EEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEE
T ss_pred eEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEee
Confidence 4567888888877654 599999999998877653 21 122233444577 6
Q ss_pred EEEEecCCCeEEEEEcCCccccceeeecCCC-----------Cce------------------------eEE-EeeCCCE
Q 028802 51 KVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP-----------NSV------------------------DAL-LKLDEDR 94 (203)
Q Consensus 51 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-----------~~v------------------------~~~-~~~~~~~ 94 (203)
.+++++.+|.++++|..+ ++.+..+.. .. .++ ..+ ++|+..+
T Consensus 329 ~l~~~~~~G~l~~lD~~t-G~~l~~~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~ 406 (677)
T 1kb0_A 329 VILHAPKNGFFFVLDRTN-GKFISAKNF-VPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGL 406 (677)
T ss_dssp EEEECCTTSEEEEEETTT-CCEEEEEES-SCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTE
T ss_pred EEEEECCCCEEEEEECCC-CCEeccccc-cccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCE
Confidence 788999999999999875 344433221 10 000 123 6888888
Q ss_pred EEEEcC-------------------------------------------CCcEEEEEccCCceeeeeccCCCcceEEEEE
Q 028802 95 VITGSE-------------------------------------------NGLISLVGILPNRIIQPIAEHSEYPIESLAL 131 (203)
Q Consensus 95 l~~~~~-------------------------------------------dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~ 131 (203)
+++... .+.|..||+.+++.+..+... . ++....+
T Consensus 407 ~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~-~~~~g~~ 484 (677)
T 1kb0_A 407 VYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV-S-PWNGGTL 484 (677)
T ss_dssp EEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES-S-SCCCCEE
T ss_pred EEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC-C-CCcCcce
Confidence 877543 167999999999998887654 2 4555567
Q ss_pred eCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028802 132 SHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 132 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
...+..+++++.|+.+++||+++++...
T Consensus 485 ~~~g~~v~~g~~dg~l~a~D~~tG~~lw 512 (677)
T 1kb0_A 485 TTAGNVVFQGTADGRLVAYHAATGEKLW 512 (677)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EeCCCEEEEECCCCcEEEEECCCCceee
Confidence 7788888889999999999999987643
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.7e-07 Score=70.80 Aligned_cols=146 Identities=6% Similarity=0.003 Sum_probs=91.6
Q ss_pred CcccccCCEE-EEEc---CCCeEEEEEcCCCeEEEeecCCc-----------------------------ccEEEEEEee
Q 028802 1 MTFAADAMKL-LGTS---GDGTLSVCNLRKNTVQTRSEFSE-----------------------------EELTSVVLMK 47 (203)
Q Consensus 1 l~~sp~~~~l-~~~~---~d~~i~v~d~~~~~~~~~~~~~~-----------------------------~~i~~l~~~~ 47 (203)
|+++|++..+ ++-. .++.|.+||+.+++....+..|. ..+..|+|+|
T Consensus 125 v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~ 204 (343)
T 2qe8_A 125 LAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA 204 (343)
T ss_dssp EEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECT
T ss_pred EEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEecc
Confidence 3567655454 4433 57899999998876655553311 2357899999
Q ss_pred CCCEEEEecCCC-eEEEEEcCCc--c-----cccee--eecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceee
Q 028802 48 NGRKVVCGSQSG-TVLLYSWGYF--K-----DCSDR--FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQ 116 (203)
Q Consensus 48 ~~~~l~~~~~d~-~i~v~d~~~~--~-----~~~~~--~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~ 116 (203)
+++.|+++...+ .+..++.... . ..... ..+ +......+ ++++|.++++....+.|.+||..+++...
T Consensus 205 dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g-~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~ 283 (343)
T 2qe8_A 205 ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYS-EKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKL 283 (343)
T ss_dssp TSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEE-ECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEE
T ss_pred CCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecc-cCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEE
Confidence 999888877655 5555554210 0 00111 112 23344556 78999999888889999999985565433
Q ss_pred eeccCCCcceEEEEEeCCCCeEEEEeCCCcE
Q 028802 117 PIAEHSEYPIESLALSHDRKFLGSISHDSML 147 (203)
Q Consensus 117 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 147 (203)
.........+.+++|.+++..+++.+..+.+
T Consensus 284 ~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 284 LVTDEKLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp EEECGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred EEECCceecCCeeEECCCCcEEEEeCccccc
Confidence 3322112257899999998877776644333
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=5.7e-06 Score=59.97 Aligned_cols=151 Identities=9% Similarity=-0.044 Sum_probs=95.5
Q ss_pred CcccccCCEEEEE-cCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEe-cCCCeEEEEEcCCccccceeeec
Q 028802 1 MTFAADAMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
++|+|+++.|+.+ ...+.|.++++........+.........+++++++..|+.+ ...+.|.++++.. .....+..
T Consensus 41 i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g--~~~~~~~~ 118 (267)
T 1npe_A 41 LAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG--TQRRVLFD 118 (267)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEEC
T ss_pred EEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCC--CCEEEEEE
Confidence 3677766655544 456889999987654433333333567899999976655544 4568899999863 22233322
Q ss_pred CCCCceeEE-EeeCCCEEEEEcC---CCcEEEEEccCCceeeeec-cCCCcceEEEEEeCCCCeEEEEe-CCCcEEEEeC
Q 028802 79 LSPNSVDAL-LKLDEDRVITGSE---NGLISLVGILPNRIIQPIA-EHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDL 152 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~---dg~v~v~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~ 152 (203)
........+ ++|++..|+.+.. .+.|..+++.. .....+. .. ......++++|++..|+.+. ..+.|.++++
T Consensus 119 ~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~-~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~ 196 (267)
T 1npe_A 119 TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDN-LGLPNGLTFDAFSSQLCWVDAGTHRAECLNP 196 (267)
T ss_dssp SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTT-CSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECC-CCCCcEEEEcCCCCEEEEEECCCCEEEEEec
Confidence 022345667 8997666665554 36788888753 3222222 22 12578899999887765555 5688999998
Q ss_pred CCc
Q 028802 153 DDI 155 (203)
Q Consensus 153 ~~~ 155 (203)
.+.
T Consensus 197 ~g~ 199 (267)
T 1npe_A 197 AQP 199 (267)
T ss_dssp TEE
T ss_pred CCC
Confidence 764
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.2e-06 Score=63.70 Aligned_cols=147 Identities=9% Similarity=-0.043 Sum_probs=100.3
Q ss_pred ccCCEEEEE-cCCCeEEEEEcCCCeEEEeecCC-cccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-CCC
Q 028802 5 ADAMKLLGT-SGDGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-LSP 81 (203)
Q Consensus 5 p~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~-~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~ 81 (203)
.+++.|+.+ -.++.+.++|..+.+.+..+... .. ...+++++..++++..++.|.++|..+. +....+.. ...
T Consensus 73 ~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~---g~glt~Dg~~l~vs~gs~~l~viD~~t~-~v~~~I~Vg~~~ 148 (266)
T 2iwa_A 73 LLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD---GWGLATDGKILYGSDGTSILYEIDPHTF-KLIKKHNVKYNG 148 (266)
T ss_dssp EETTEEEEEETTCSEEEEEETTTTEEEEEEECCSSS---CCEEEECSSSEEEECSSSEEEEECTTTC-CEEEEEECEETT
T ss_pred EeCCEEEEEEecCCEEEEEECCCCcEEEEEECCCCC---eEEEEECCCEEEEECCCCeEEEEECCCC-cEEEEEEECCCC
Confidence 345555444 46799999999999888888643 22 2446678887877777899999998753 44444442 011
Q ss_pred C---ceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccC------------CCcceEEEEEeCCCCeE-EEEeCC
Q 028802 82 N---SVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEH------------SEYPIESLALSHDRKFL-GSISHD 144 (203)
Q Consensus 82 ~---~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~------------~~~~i~~~~~~~~~~~l-~~~~~d 144 (203)
. .+..+ |. ++...+.....+.|.+.|+.+++.+..+... .......|+|+|+++.| +++...
T Consensus 149 ~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~ 227 (266)
T 2iwa_A 149 HRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLW 227 (266)
T ss_dssp EECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTC
T ss_pred cccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCC
Confidence 1 24455 55 6654444445789999999999988877542 01145899999998765 455578
Q ss_pred CcEEEEeCCCcc
Q 028802 145 SMLKLWDLDDIL 156 (203)
Q Consensus 145 ~~i~iwd~~~~~ 156 (203)
+.|.+.++....
T Consensus 228 ~~v~~i~l~~~~ 239 (266)
T 2iwa_A 228 PKLFEIKLHLVR 239 (266)
T ss_dssp SEEEEEEEEECC
T ss_pred CeEEEEEEeccc
Confidence 889999887653
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.74 E-value=4.8e-07 Score=72.38 Aligned_cols=144 Identities=10% Similarity=0.028 Sum_probs=100.7
Q ss_pred ccCCEEEEEc------------------CCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCC-------
Q 028802 5 ADAMKLLGTS------------------GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSG------- 59 (203)
Q Consensus 5 p~~~~l~~~~------------------~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~------- 59 (203)
|+++++++++ .++.+.++|..+.+.+..+.-.. ....++++|+|+++++++.+.
T Consensus 145 p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~ 223 (595)
T 1fwx_A 145 PRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLP 223 (595)
T ss_dssp SBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHH
T ss_pred CCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchh
Confidence 8899988874 24679999999998888776433 356678999999998877543
Q ss_pred -------------------------------eEEEEEcCCc-ccc-ceeeecCCCCceeEE-EeeCCCEEEEEc-CCCcE
Q 028802 60 -------------------------------TVLLYSWGYF-KDC-SDRFVGLSPNSVDAL-LKLDEDRVITGS-ENGLI 104 (203)
Q Consensus 60 -------------------------------~i~v~d~~~~-~~~-~~~~~~~~~~~v~~~-~~~~~~~l~~~~-~dg~v 104 (203)
.|.|.|.... +.. +..+.. .....++ ++|||+++++++ .+..|
T Consensus 224 ~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv--g~~PhGv~~sPDGk~v~V~~~~s~~V 301 (595)
T 1fwx_A 224 EMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI--ANNPHGCNMAPDKKHLCVAGKLSPTV 301 (595)
T ss_dssp HHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE--ESSCCCEEECTTSSEEEEECTTSSBE
T ss_pred hccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec--CCCceEEEEcCCCCEEEEeCCCCCeE
Confidence 3555555431 112 233332 2234455 899999888776 47889
Q ss_pred EEEEccCCc------------eeeeeccCCCcceEEEEEeCCCCeEE-EEeCCCcEEEEeCCC
Q 028802 105 SLVGILPNR------------IIQPIAEHSEYPIESLALSHDRKFLG-SISHDSMLKLWDLDD 154 (203)
Q Consensus 105 ~v~d~~~~~------------~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~iwd~~~ 154 (203)
.++|+.+.+ ....+... .....++|+|+| +++ +.-.|+.|.+|++.+
T Consensus 302 sVid~~~~~~~~~~~l~~~~~v~~~v~vG--~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 302 TVLDVTRFDAVFYENADPRSAVVAEPELG--LGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp EEEEGGGHHHHHHSCCCGGGGEEECCBCC--SCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred EEEECcccccccccccCcccceEEEcCCC--CCcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence 999998652 33444433 257889999999 554 555899999999877
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.6e-06 Score=60.84 Aligned_cols=152 Identities=11% Similarity=0.054 Sum_probs=100.6
Q ss_pred cccccCCEEEEEcCC--CeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEec-CCCeEEEEEcCCccccceeeec
Q 028802 2 TFAADAMKLLGTSGD--GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d--~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
.|++ +.++.+.+.. ..|+++|+.+++.+..+..... .......+.+..|+... .++.+.+||..+ .+.+.++..
T Consensus 27 ~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~~v~v~D~~t-l~~~~ti~~ 103 (243)
T 3mbr_X 27 FYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNHEGFVYDLAT-LTPRARFRY 103 (243)
T ss_dssp EEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTT-TEEEEEEEC
T ss_pred EEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCCEEEEEECCc-CcEEEEEeC
Confidence 4554 4445555554 4899999999998887764332 33333344455555544 588999999975 466666664
Q ss_pred CCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCC----cceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 79 LSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE----YPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 79 ~~~~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
... -+.+ .+++..|+.+..++.|+++|..+.+.+..+..... ..+..+.|. +|+.++..-.+..|.+.|.++
T Consensus 104 -~~~-Gwgl-t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~t 179 (243)
T 3mbr_X 104 -PGE-GWAL-TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPAS 179 (243)
T ss_dssp -SSC-CCEE-EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTT
T ss_pred -CCC-ceEE-eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCC
Confidence 322 2333 56777777777788999999999988877754311 135566665 665554444678999999998
Q ss_pred cccCCC
Q 028802 155 ILKGSG 160 (203)
Q Consensus 155 ~~~~~~ 160 (203)
+.....
T Consensus 180 G~V~~~ 185 (243)
T 3mbr_X 180 GKVVAW 185 (243)
T ss_dssp CBEEEE
T ss_pred CCEEEE
Confidence 875533
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=7.6e-07 Score=73.28 Aligned_cols=144 Identities=9% Similarity=0.035 Sum_probs=99.5
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCc-----------ccE------------------------EEEEEeeCCCEE
Q 028802 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSE-----------EEL------------------------TSVVLMKNGRKV 52 (203)
Q Consensus 8 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-----------~~i------------------------~~l~~~~~~~~l 52 (203)
..|+.++.+|.|+++|..+|+++..+.... .++ ..++++|++.++
T Consensus 328 ~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~ 407 (677)
T 1kb0_A 328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV 407 (677)
T ss_dssp EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred eEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEE
Confidence 578889999999999999998876654211 011 146788988888
Q ss_pred EEecC-------------------------------------------CCeEEEEEcCCccccceeeecCCCCceeEE-E
Q 028802 53 VCGSQ-------------------------------------------SGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-L 88 (203)
Q Consensus 53 ~~~~~-------------------------------------------d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~ 88 (203)
++... .+.|..||+.+. +.+-.+.. ..++... +
T Consensus 408 yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG-~~~W~~~~--~~~~~~g~~ 484 (677)
T 1kb0_A 408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQ-KAAWSVEH--VSPWNGGTL 484 (677)
T ss_dssp EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTT-EEEEEEEE--SSSCCCCEE
T ss_pred EEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCC-cEEeecCC--CCCCcCcce
Confidence 77533 167999998764 44434432 2233333 6
Q ss_pred eeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeE-EEEeC----------------CCcEEEEe
Q 028802 89 KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFL-GSISH----------------DSMLKLWD 151 (203)
Q Consensus 89 ~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~----------------d~~i~iwd 151 (203)
...+.+++.++.+|.+++||..+++.+..+.........-+.|.++|+.+ ++.+. .+.+.+|.
T Consensus 485 ~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~ 564 (677)
T 1kb0_A 485 TTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFV 564 (677)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEE
T ss_pred EeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEe
Confidence 77888899999999999999999999988876543233446677888654 43222 36788888
Q ss_pred CCC
Q 028802 152 LDD 154 (203)
Q Consensus 152 ~~~ 154 (203)
+..
T Consensus 565 l~~ 567 (677)
T 1kb0_A 565 VGG 567 (677)
T ss_dssp ETC
T ss_pred ccc
Confidence 763
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.70 E-value=3.3e-06 Score=65.81 Aligned_cols=148 Identities=5% Similarity=0.058 Sum_probs=92.7
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCC-C----eEEEEEcCCccccc-
Q 028802 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS-G----TVLLYSWGYFKDCS- 73 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d-~----~i~v~d~~~~~~~~- 73 (203)
|+|+| ++..|+++...+.|+++|+.++....... .......|+|++++++|+++... + .+.+++.. +...
T Consensus 142 lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~--g~~~~ 218 (430)
T 3tc9_A 142 LSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE--SGFKV 218 (430)
T ss_dssp EEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG--GTSCS
T ss_pred EEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC--Cceee
Confidence 46787 45566665554889999988776544433 45568899999999966666542 1 34444432 2221
Q ss_pred -eeeecCCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe-CCCcEEE
Q 028802 74 -DRFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKL 149 (203)
Q Consensus 74 -~~~~~~~~~~v~~~-~~~-~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i 149 (203)
..+.. . .....+ ++| ++.++++-...+.|+.++...+................++|+|+|++|+.+. ..+.|..
T Consensus 219 ~~~l~~-~-~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~ 296 (430)
T 3tc9_A 219 ITELTK-G-QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILR 296 (430)
T ss_dssp EEEEEE-C-SSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred eeeecc-C-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEE
Confidence 22222 2 223445 788 6666666667789999998766542222222112467899999999665554 6788999
Q ss_pred EeCC
Q 028802 150 WDLD 153 (203)
Q Consensus 150 wd~~ 153 (203)
++..
T Consensus 297 ~~~d 300 (430)
T 3tc9_A 297 SDYD 300 (430)
T ss_dssp EEEE
T ss_pred EeCC
Confidence 8765
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.67 E-value=1.6e-06 Score=69.39 Aligned_cols=146 Identities=10% Similarity=0.062 Sum_probs=103.5
Q ss_pred ccCCEEEEEcC-CCeEEEEEcCCCeEEEeecCC-cccEEEEEE-e-eCCCEEEEec------------------CCCeEE
Q 028802 5 ADAMKLLGTSG-DGTLSVCNLRKNTVQTRSEFS-EEELTSVVL-M-KNGRKVVCGS------------------QSGTVL 62 (203)
Q Consensus 5 p~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~-~~~i~~l~~-~-~~~~~l~~~~------------------~d~~i~ 62 (203)
+||++|++... ++.|.+.|+.+.++...+... ...+..+++ + |++.++++++ .++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 38888877654 567999999999887755422 245788887 5 8999998884 245788
Q ss_pred EEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCC--------------------------------------c
Q 028802 63 LYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENG--------------------------------------L 103 (203)
Q Consensus 63 v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg--------------------------------------~ 103 (203)
+.|..+ .+...++.- .. ....+ ++|+|+++++.+.+. .
T Consensus 179 vID~~t-~~v~~qI~V-gg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~ 255 (595)
T 1fwx_A 179 AVDADK-WEVAWQVLV-SG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG 255 (595)
T ss_dssp EEETTT-TEEEEEEEE-SS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred EEECCC-CeEEEEEEe-CC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence 899875 344444443 23 33444 799999988887542 4
Q ss_pred EEEEEccC--Cce-eeeeccCCCcceEEEEEeCCCCeEEEEe-CCCcEEEEeCCCc
Q 028802 104 ISLVGILP--NRI-IQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLDDI 155 (203)
Q Consensus 104 v~v~d~~~--~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~ 155 (203)
|.|.|..+ ++. +..+... . ...++.++|||+++++++ .+.+|.++|+.+.
T Consensus 256 V~VID~~~~~~~~~~~~Ipvg-~-~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~ 309 (595)
T 1fwx_A 256 VKVVDGRKEASSLFTRYIPIA-N-NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF 309 (595)
T ss_dssp EEEEECSGGGCCSSEEEEEEE-S-SCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred EEEEeCcccCCceeEEEEecC-C-CceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence 77777776 444 4455444 2 467899999999987666 7889999999976
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.56 E-value=2.5e-06 Score=70.40 Aligned_cols=131 Identities=11% Similarity=0.035 Sum_probs=88.9
Q ss_pred EEEEEcCCCeEEEEEcCCCeEEEeecCCc----------------------------cc-----------EEEEEEeeCC
Q 028802 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSE----------------------------EE-----------LTSVVLMKNG 49 (203)
Q Consensus 9 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~----------------------------~~-----------i~~l~~~~~~ 49 (203)
.|+.++.+|.++++|..+|+++....... .. -..++++|+.
T Consensus 321 ~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~ 400 (689)
T 1yiq_A 321 VLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT 400 (689)
T ss_dssp EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred EEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC
Confidence 67888999999999999998874332110 00 0126788887
Q ss_pred CEEEEecC---------------------------------------------CCeEEEEEcCCccccceeeecCCCCce
Q 028802 50 RKVVCGSQ---------------------------------------------SGTVLLYSWGYFKDCSDRFVGLSPNSV 84 (203)
Q Consensus 50 ~~l~~~~~---------------------------------------------d~~i~v~d~~~~~~~~~~~~~~~~~~v 84 (203)
.++++... +|.|..||+.+. +.+-.+.. +....
T Consensus 401 ~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG-~~~W~~~~-~~~~~ 478 (689)
T 1yiq_A 401 GLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ-QAAWEVPY-VTIFN 478 (689)
T ss_dssp TEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTT-EEEEEEEE-SSSCC
T ss_pred CEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCC-CeEeEccC-CCCcc
Confidence 77776522 377999999764 44444443 33222
Q ss_pred eEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCe-EEEE
Q 028802 85 DALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF-LGSI 141 (203)
Q Consensus 85 ~~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~ 141 (203)
...+...+.+++.++.|+.|+.||.++|+.+..+.........-+.|..+|+. +++.
T Consensus 479 ~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~ 536 (689)
T 1yiq_A 479 GGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFM 536 (689)
T ss_dssp CCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred CccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEE
Confidence 23467788899999999999999999999998887664322234677888864 4433
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=8.1e-06 Score=60.88 Aligned_cols=149 Identities=9% Similarity=-0.032 Sum_probs=92.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEee-cC------------------CcccEEEEEEee-CCCEEEEecCCCe
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRS-EF------------------SEEELTSVVLMK-NGRKVVCGSQSGT 60 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~------------------~~~~i~~l~~~~-~~~~l~~~~~d~~ 60 (203)
++|++++++++++..++.|..|+..++...... .. ....+..+++.+ +++ |+++...+.
T Consensus 24 i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d~~~~ 102 (322)
T 2fp8_A 24 FTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVDCYYH 102 (322)
T ss_dssp EECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEETTTE
T ss_pred EEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEECCCC
Confidence 467888887888888899999998765432211 00 013578899997 554 555544455
Q ss_pred EEEEEcCCccccceeeec----CCCCceeEE-Eee-CCCEEEEEcC-----------------CCcEEEEEccCCceeee
Q 028802 61 VLLYSWGYFKDCSDRFVG----LSPNSVDAL-LKL-DEDRVITGSE-----------------NGLISLVGILPNRIIQP 117 (203)
Q Consensus 61 i~v~d~~~~~~~~~~~~~----~~~~~v~~~-~~~-~~~~l~~~~~-----------------dg~v~v~d~~~~~~~~~ 117 (203)
+..+|... ..+..+.. ........+ +.+ +|.+.++-.. .+.|..||..+++....
T Consensus 103 i~~~d~~~--g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~ 180 (322)
T 2fp8_A 103 LSVVGSEG--GHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLL 180 (322)
T ss_dssp EEEECTTC--EECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEE
T ss_pred EEEEeCCC--CEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEe
Confidence 88887652 22222221 011234566 788 8877665432 36788888776654332
Q ss_pred eccCCCcceEEEEEeCCCCeEEEE-eCCCcEEEEeCCC
Q 028802 118 IAEHSEYPIESLALSHDRKFLGSI-SHDSMLKLWDLDD 154 (203)
Q Consensus 118 ~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~iwd~~~ 154 (203)
.... . ....++|+|++++|+.+ ...+.|.+|++.+
T Consensus 181 ~~~~-~-~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 181 LKEL-H-VPGGAEVSADSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp EEEE-S-CCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred ccCC-c-cCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 2221 1 34678999999876655 4568899999875
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.55 E-value=1.2e-05 Score=61.04 Aligned_cols=146 Identities=8% Similarity=-0.018 Sum_probs=95.4
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCC---------cccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFS---------EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~---------~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 76 (203)
.+..|++++.++.|..+|..+++.+...... ...+.+. ...++..+++++.++.|..+|..+. +.+-..
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG-~~~W~~ 129 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDG-TVAWQT 129 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTC-CEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCC-CEEEEE
Confidence 4567888888899999999999887766542 1223222 2234567888888999999998753 444333
Q ss_pred ecCCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcce-----EEEEEeCCCCeEEEEeCCCcEEEEe
Q 028802 77 VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPI-----ESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 77 ~~~~~~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~l~~~~~d~~i~iwd 151 (203)
.. .......... .+..+++++.++.|..+|..+|+.+........ .. ...... +..++.++.++.|..+|
T Consensus 130 ~~-~~~~~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~-~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d 204 (376)
T 3q7m_A 130 KV-AGEALSRPVV-SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMP-SLSLRGESAPTTA--FGAAVVGGDNGRVSAVL 204 (376)
T ss_dssp EC-SSCCCSCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEECCC------CCCCCCEEE--TTEEEECCTTTEEEEEE
T ss_pred eC-CCceEcCCEE-ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCC-ceeecCCCCcEEE--CCEEEEEcCCCEEEEEE
Confidence 33 2221111122 245788888899999999999998877655421 11 122222 45677788889999999
Q ss_pred CCCcccC
Q 028802 152 LDDILKG 158 (203)
Q Consensus 152 ~~~~~~~ 158 (203)
..++...
T Consensus 205 ~~tG~~~ 211 (376)
T 3q7m_A 205 MEQGQMI 211 (376)
T ss_dssp TTTCCEE
T ss_pred CCCCcEE
Confidence 9877643
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.8e-06 Score=70.79 Aligned_cols=150 Identities=7% Similarity=0.001 Sum_probs=87.3
Q ss_pred ccc-ccCCEEEEEcC-C----CeEEEEEcCCC-eEEE-eecCCcccEEEEEEeeCCCEEEEecCC-----CeEEEEEcCC
Q 028802 2 TFA-ADAMKLLGTSG-D----GTLSVCNLRKN-TVQT-RSEFSEEELTSVVLMKNGRKVVCGSQS-----GTVLLYSWGY 68 (203)
Q Consensus 2 ~~s-p~~~~l~~~~~-d----~~i~v~d~~~~-~~~~-~~~~~~~~i~~l~~~~~~~~l~~~~~d-----~~i~v~d~~~ 68 (203)
+|| |||++||.+.. + .+|+++|+.++ +.+. .+ ......++|+||++.|+....+ ..|+++++.+
T Consensus 180 ~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~---~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt 256 (751)
T 2xe4_A 180 KPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV---SGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGK 256 (751)
T ss_dssp EECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE---EEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTS
T ss_pred EecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc---cCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCC
Confidence 689 99998876533 2 35999999988 6321 11 1123468899999888877654 2577777764
Q ss_pred cccc-ceeeecCCCCceeEE-EeeCCCEEEEEcC---CCcEEEEEccCCc-ee--eeeccCCCcceEEEEEeCCCCeEEE
Q 028802 69 FKDC-SDRFVGLSPNSVDAL-LKLDEDRVITGSE---NGLISLVGILPNR-II--QPIAEHSEYPIESLALSHDRKFLGS 140 (203)
Q Consensus 69 ~~~~-~~~~~~~~~~~v~~~-~~~~~~~l~~~~~---dg~v~v~d~~~~~-~~--~~~~~~~~~~i~~~~~~~~~~~l~~ 140 (203)
.... ...+..........+ |+|+|++|+..+. ...|+++|+.++. .. ..+.........++.|+..+.+++.
T Consensus 257 ~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~ 336 (751)
T 2xe4_A 257 LQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVIL 336 (751)
T ss_dssp CGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEE
T ss_pred CchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEE
Confidence 3211 122221022334455 8999999887653 3458889987652 12 3333222224555665544434444
Q ss_pred EeCC----CcEEEEeCCC
Q 028802 141 ISHD----SMLKLWDLDD 154 (203)
Q Consensus 141 ~~~d----~~i~iwd~~~ 154 (203)
...+ ..|.++++.+
T Consensus 337 t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 337 TNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp ECTTTCTTCEEEEEETTS
T ss_pred eCCCCCCCcEEEEEcCCC
Confidence 4333 3577777764
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=4.6e-05 Score=55.14 Aligned_cols=151 Identities=6% Similarity=-0.117 Sum_probs=91.3
Q ss_pred CcccccCCEEEEE-cCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC---CCeEEEEEcCCccccceee
Q 028802 1 MTFAADAMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~ 76 (203)
|+++|++..|+.+ ...+.|.++++........+.........++++|++..|+.+.. .+.|.++++.. .....+
T Consensus 84 ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg--~~~~~~ 161 (267)
T 1npe_A 84 IALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG--TNRRIL 161 (267)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS--CCCEEE
T ss_pred EEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC--CCcEEE
Confidence 4577766555444 45678999988653322222222245789999997666655553 36888888752 333333
Q ss_pred ecCCCCceeEE-EeeCCCEEEEEc-CCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe-CCCcEEEEeCC
Q 028802 77 VGLSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLD 153 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~-~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~ 153 (203)
..........+ ++|++..|+.+. ..+.|.++++........+... . ....++.. +..|+.+. ..+.|.++|..
T Consensus 162 ~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~-~-~P~gi~~d--~~~lyva~~~~~~v~~~d~~ 237 (267)
T 1npe_A 162 AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL-Q-YPFAVTSY--GKNLYYTDWKTNSVIAMDLA 237 (267)
T ss_dssp ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC-C-SEEEEEEE--TTEEEEEETTTTEEEEEETT
T ss_pred EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC-C-CceEEEEe--CCEEEEEECCCCeEEEEeCC
Confidence 21023445667 899877666555 4678999998754333333322 2 34566654 45555444 66899999998
Q ss_pred Cccc
Q 028802 154 DILK 157 (203)
Q Consensus 154 ~~~~ 157 (203)
++..
T Consensus 238 ~g~~ 241 (267)
T 1npe_A 238 ISKE 241 (267)
T ss_dssp TTEE
T ss_pred CCCc
Confidence 7654
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=5.2e-06 Score=68.26 Aligned_cols=153 Identities=8% Similarity=0.043 Sum_probs=101.3
Q ss_pred cccccCCEEEEEcCCC-------------------eEEEEEcCCCeEEEeecC--Cc-------ccEEEEEEeeCCC---
Q 028802 2 TFAADAMKLLGTSGDG-------------------TLSVCNLRKNTVQTRSEF--SE-------EELTSVVLMKNGR--- 50 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~-------------------~i~v~d~~~~~~~~~~~~--~~-------~~i~~l~~~~~~~--- 50 (203)
+++|+..+++.++.++ .|..+|..+|+.+..++. |. .++....+..+++
T Consensus 236 a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~ 315 (668)
T 1kv9_A 236 AYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRK 315 (668)
T ss_dssp EEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEE
T ss_pred EEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEE
Confidence 4566778888887765 499999999999887754 21 2333333445665
Q ss_pred EEEEecCCCeEEEEEcCCccccceeeecCCC------------Cc------------------------eeEE-EeeCCC
Q 028802 51 KVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP------------NS------------------------VDAL-LKLDED 93 (203)
Q Consensus 51 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~------------~~------------------------v~~~-~~~~~~ 93 (203)
.++.++.+|.++++|..+ ++.+..+.. .. .+ -..+ ++|+..
T Consensus 316 ~v~~~~~~G~l~~lD~~t-G~~l~~~~~-~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g 393 (668)
T 1kv9_A 316 VLMQAPKNGFFYVLDRTN-GKLISAEKF-GKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTG 393 (668)
T ss_dssp EEEECCTTSEEEEEETTT-CCEEEEEES-SCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTT
T ss_pred EEEEECCCCEEEEEECCC-CCEeccccc-cccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCC
Confidence 688899999999999875 344321110 00 00 0012 566555
Q ss_pred EEEEE------------------------------------cCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCe
Q 028802 94 RVITG------------------------------------SENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF 137 (203)
Q Consensus 94 ~l~~~------------------------------------~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 137 (203)
+++.. ..+|.|..||+.+++.+.....+. +.....+...+..
T Consensus 394 ~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~--~~~~~~~~t~gg~ 471 (668)
T 1kv9_A 394 LVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT--HWNGGTLSTAGNL 471 (668)
T ss_dssp EEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS--SCCCCEEEETTTE
T ss_pred EEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC--CCcCceeEeCCCE
Confidence 55431 123789999999999987776542 3444455567788
Q ss_pred EEEEeCCCcEEEEeCCCcccC
Q 028802 138 LGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 138 l~~~~~d~~i~iwd~~~~~~~ 158 (203)
+++++.|+.|++||.++++..
T Consensus 472 vf~g~~dg~l~a~d~~tG~~l 492 (668)
T 1kv9_A 472 VFQGTAAGQMHAYSADKGEAL 492 (668)
T ss_dssp EEEECTTSEEEEEETTTCCEE
T ss_pred EEEECCcccchhhhhhcChhh
Confidence 888999999999999988654
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=1e-06 Score=67.22 Aligned_cols=125 Identities=11% Similarity=-0.146 Sum_probs=88.0
Q ss_pred eEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEec----------CCCeEEEEEcCCccccceeeecCC-------
Q 028802 18 TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS----------QSGTVLLYSWGYFKDCSDRFVGLS------- 80 (203)
Q Consensus 18 ~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~----------~d~~i~v~d~~~~~~~~~~~~~~~------- 80 (203)
+|.++|..+++.+.++.....+ .+.++|++++++++. .++.|.+||+.+ .+.+..+.. .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T-~~vv~~I~v-~~~~~~~~ 122 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT-FLPIADIEL-PDAPRFSV 122 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT-CCEEEEEEE-TTSCSCCB
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC-CCEEEEEEC-CCcccccc
Confidence 8899999999999988765566 799999999988886 368899999986 456666643 3
Q ss_pred CCceeEE-EeeCCCEEEEEcC--CCcEEE--EEccCCceeeeeccCCCcceEEEEEeCCCC-eEEEEeCCCcEEEEeCCC
Q 028802 81 PNSVDAL-LKLDEDRVITGSE--NGLISL--VGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~--dg~v~v--~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~ 154 (203)
......+ ++|+|++++++.. ...|.+ +|+.+ +..+... + + +.+.|++. .+++.+.|+.+.+.++.+
T Consensus 123 g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~--~--~~~~p~g~~~~~~~~~dg~~~~vd~~~ 194 (368)
T 1mda_H 123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-S--C--FHIHPGAAATHYLGSCPASLAASDLAA 194 (368)
T ss_dssp SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-S--C--CCCEEEETTEEECCCCTTSCEEEECCS
T ss_pred CCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-C--c--eEEccCCCeEEEEEcCCCCEEEEECcc
Confidence 1234455 8999999999875 456888 99877 4444332 1 1 12334443 344555677777777765
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.45 E-value=2.3e-05 Score=59.58 Aligned_cols=136 Identities=12% Similarity=0.133 Sum_probs=91.2
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeE
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~ 86 (203)
+..++.++.++.|..+|..+++.+...... ....+.. ++..+++++.++.+..+|..+. +.+-.........+..
T Consensus 239 ~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~--~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG-~~~w~~~~~~~~~~~~ 313 (376)
T 3q7m_A 239 NGVVFALAYNGNLTALDLRSGQIMWKRELG--SVNDFIV--DGNRIYLVDQNDRVMALTIDGG-VTLWTQSDLLHRLLTS 313 (376)
T ss_dssp TTEEEEECTTSCEEEEETTTCCEEEEECCC--CEEEEEE--ETTEEEEEETTCCEEEEETTTC-CEEEEECTTTTSCCCC
T ss_pred CCEEEEEecCcEEEEEECCCCcEEeeccCC--CCCCceE--ECCEEEEEcCCCeEEEEECCCC-cEEEeecccCCCcccC
Confidence 456777788899999999999887766532 2333333 4667888888999999998754 4333332101112222
Q ss_pred EEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEE-EEEeCCCCeEEEEeCCCcEEEEe
Q 028802 87 LLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIES-LALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 87 ~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~d~~i~iwd 151 (203)
+ ...+..+++++.+|.|+++|..+++.+........ .+.. ... .+..|+.++.+|.|+.|+
T Consensus 314 ~-~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~-~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 314 P-VLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSS-GFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp C-EEETTEEEEECTTSEEEEEETTTCCEEEEEECCTT-CBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred C-EEECCEEEEEeCCCeEEEEECCCCcEEEEEecCCC-cceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 2 12356788899999999999999998877765322 2322 222 245788888899999987
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.45 E-value=2e-05 Score=56.82 Aligned_cols=134 Identities=11% Similarity=0.041 Sum_probs=90.2
Q ss_pred ccCCEEEEE-cCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-CCCC
Q 028802 5 ADAMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-LSPN 82 (203)
Q Consensus 5 p~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~ 82 (203)
++++.|+.. ..++.+.+||..+.+.+.++..... ...+++++..|+.+...+.|.++|..+. +.+..+.. ....
T Consensus 94 ~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~e---G~glt~dg~~L~~SdGs~~i~~iDp~T~-~v~~~I~V~~~g~ 169 (262)
T 3nol_A 94 DWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGE---GWGLTHNDQYLIMSDGTPVLRFLDPESL-TPVRTITVTAHGE 169 (262)
T ss_dssp EETTEEEEEESSSSEEEEEETTTCCEEEEEECSSC---CCCEEECSSCEEECCSSSEEEEECTTTC-SEEEEEECEETTE
T ss_pred EeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCC---ceEEecCCCEEEEECCCCeEEEEcCCCC-eEEEEEEeccCCc
Confidence 445555544 4589999999999999888875332 2344567888887777888999998753 44444432 0122
Q ss_pred c---eeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC-----------CcceEEEEEeCCCCeEEEEeC
Q 028802 83 S---VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS-----------EYPIESLALSHDRKFLGSISH 143 (203)
Q Consensus 83 ~---v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~-----------~~~i~~~~~~~~~~~l~~~~~ 143 (203)
+ +..+ +. +|...+..-....|.+.|..+++.+..+.... ..-...|+|+|+++.|++.+.
T Consensus 170 ~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 170 ELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp ECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred cccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 2 3335 43 67655555467889999999999887775421 124578999999887776663
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.43 E-value=6.6e-06 Score=61.10 Aligned_cols=136 Identities=18% Similarity=0.086 Sum_probs=91.6
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeE
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~ 86 (203)
+..|.+++.++.|..++.. ++.......+...+.++...+++. |+.++.++.|..||.. +.....+.. ....+.+
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~--g~~~~~~~~-~~~~~~~ 181 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD--GTEKWRFKT-NDAITSA 181 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT--SCEEEEEEC-SSCCCSC
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC--CCEeEEEec-CCCceee
Confidence 3457777788999999988 766666655445556666666666 5566777899999976 444444444 4445555
Q ss_pred E-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 87 L-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 87 ~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
+ ..+++.++ .++ +.|..+| .+++.+........ .+.++...++|. |..++.++.|..++..
T Consensus 182 ~~~d~~g~l~-v~t--~~l~~~d-~~g~~~~~~~~~~~-~~~~~~~~~~g~-l~v~t~~~gl~~~~~~ 243 (330)
T 3hxj_A 182 ASIGKDGTIY-FGS--DKVYAIN-PDGTEKWNFYAGYW-TVTRPAISEDGT-IYVTSLDGHLYAINPD 243 (330)
T ss_dssp CEECTTCCEE-EES--SSEEEEC-TTSCEEEEECCSSC-CCSCCEECTTSC-EEEEETTTEEEEECTT
T ss_pred eEEcCCCEEE-EEe--CEEEEEC-CCCcEEEEEccCCc-ceeceEECCCCe-EEEEcCCCeEEEECCC
Confidence 5 45666644 444 7799999 77777766655433 577788888875 4556667788888753
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.43 E-value=4e-05 Score=55.38 Aligned_cols=134 Identities=11% Similarity=-0.023 Sum_probs=88.3
Q ss_pred ccCCEEE-EEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-CCCC
Q 028802 5 ADAMKLL-GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-LSPN 82 (203)
Q Consensus 5 p~~~~l~-~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~ 82 (203)
++++.|+ ....++.+.+||..+.+.+.++...... ..+.+++..|+.+..++.|.++|..+ .+.+..+.. ....
T Consensus 103 ~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eG---wGLt~Dg~~L~vSdGs~~l~~iDp~T-~~v~~~I~V~~~g~ 178 (268)
T 3nok_A 103 SDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEG---WGLCYWNGKLVRSDGGTMLTFHEPDG-FALVGAVQVKLRGQ 178 (268)
T ss_dssp ECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCC---CCEEEETTEEEEECSSSEEEEECTTT-CCEEEEEECEETTE
T ss_pred EeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCce---eEEecCCCEEEEECCCCEEEEEcCCC-CeEEEEEEeCCCCc
Confidence 3444443 3456899999999999998888753332 23346788888888889999999875 344554432 0222
Q ss_pred c---eeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccC------------CCcceEEEEEeCCCCeEEEEe
Q 028802 83 S---VDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEH------------SEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 83 ~---v~~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~------------~~~~i~~~~~~~~~~~l~~~~ 142 (203)
+ +..+-..+|...+..-....|.+.|..+++.+..+... ...-...|+|+|+++.|++.+
T Consensus 179 ~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 179 PVELINELECANGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp ECCCEEEEEEETTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred ccccccccEEeCCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 2 23341237755544445788999999999988776432 112468899999876665554
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.38 E-value=9.9e-05 Score=52.73 Aligned_cols=133 Identities=10% Similarity=0.036 Sum_probs=87.8
Q ss_pred cCCEEEE-EcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-CCCCc
Q 028802 6 DAMKLLG-TSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-LSPNS 83 (203)
Q Consensus 6 ~~~~l~~-~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~ 83 (203)
.++.|+. ...++.+.+||..+.+.+.++.....+ ..+.+++..|+.+..++.|.++|..+. +.+..+.. .+..+
T Consensus 73 ~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G---wglt~dg~~L~vSdgs~~l~~iDp~t~-~~~~~I~V~~~g~~ 148 (243)
T 3mbr_X 73 WRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG---WALTSDDSHLYMSDGTAVIRKLDPDTL-QQVGSIKVTAGGRP 148 (243)
T ss_dssp ETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCC---CEEEECSSCEEEECSSSEEEEECTTTC-CEEEEEECEETTEE
T ss_pred eCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc---eEEeeCCCEEEEECCCCeEEEEeCCCC-eEEEEEEEccCCcc
Confidence 3444443 456899999999999998888754332 334467777777777899999998753 44444432 01222
Q ss_pred ---eeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccC------------CCcceEEEEEeCCCCeEEEEe
Q 028802 84 ---VDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEH------------SEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 84 ---v~~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~------------~~~~i~~~~~~~~~~~l~~~~ 142 (203)
+..+-..+|...+..-....|.+.|..+++.+..+... ...-...|+++|++..|++.+
T Consensus 149 ~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 149 LDNLNELEWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp CCCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred cccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 23331236665544445778999999999988776522 112467899999887766665
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.2e-05 Score=59.65 Aligned_cols=141 Identities=10% Similarity=-0.010 Sum_probs=88.6
Q ss_pred cccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCc
Q 028802 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS 83 (203)
Q Consensus 4 sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 83 (203)
.+++.. ..++ +.|..++ .+++...........+.++...+++. |++++.++.+..++.. +..+..+.. ....
T Consensus 185 d~~g~l-~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~--g~~~~~~~~-~~~~ 256 (330)
T 3hxj_A 185 GKDGTI-YFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPD--GTEKWRFKT-GKRI 256 (330)
T ss_dssp CTTCCE-EEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTT--SCEEEEEEC-SSCC
T ss_pred cCCCEE-EEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCC--CCEeEEeeC-CCCc
Confidence 345554 4444 7788999 67766666665555677777777765 4555667778888743 344444443 3333
Q ss_pred eeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 84 VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+..+ ..+++ .|..++.+|.|..+|. +++.+..+... ...+.++...++++ |..++.+|.+++.......
T Consensus 257 ~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~-~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 257 ESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETG-SWIIATPVIDENGT-IYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp CSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECS-SCCCSCCEECTTCC-EEEECTTSCEEEEEC----
T ss_pred cccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcC-CccccceEEcCCCE-EEEEcCCCeEEEEeccccc
Confidence 3334 34444 5667788888999995 67776666544 32566777777775 5567889999988765443
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.34 E-value=8e-05 Score=58.05 Aligned_cols=147 Identities=10% Similarity=0.075 Sum_probs=87.3
Q ss_pred Cccccc--CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCC-----eEEEEEcCCccccc
Q 028802 1 MTFAAD--AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSG-----TVLLYSWGYFKDCS 73 (203)
Q Consensus 1 l~~sp~--~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~-----~i~v~d~~~~~~~~ 73 (203)
|+|+|+ ...|+.+...+.|+.++..++...... ........++++++++ |+++...+ .+..++.. ....
T Consensus 144 vavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~--~~~~ 219 (433)
T 4hw6_A 144 MMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRA--SGFT 219 (433)
T ss_dssp EEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGG--GTTC
T ss_pred EEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECC--CCee
Confidence 467774 445555544488999998877665443 3445688999999999 44444321 23333322 1111
Q ss_pred --eeeecCCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCceeeee-ccCCCcceEEEEEeCCCCeEEEEe-CCCcE
Q 028802 74 --DRFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPI-AEHSEYPIESLALSHDRKFLGSIS-HDSML 147 (203)
Q Consensus 74 --~~~~~~~~~~v~~~-~~~-~~~~l~~~~~dg~v~v~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i 147 (203)
..+.. ......+ ++| ++.++++-...+.|+.++..++.....+ ..........++|+|++++|+.+. ..+.|
T Consensus 220 ~~~~~~~--~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I 297 (433)
T 4hw6_A 220 ERLSLCN--ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCI 297 (433)
T ss_dssp CEEEEEE--CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEE
T ss_pred ccccccc--cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEE
Confidence 11211 1223334 788 6666556556788999998877652222 222121345799999999665554 56789
Q ss_pred EEEeCC
Q 028802 148 KLWDLD 153 (203)
Q Consensus 148 ~iwd~~ 153 (203)
+.++..
T Consensus 298 ~~~~~d 303 (433)
T 4hw6_A 298 YRVDYN 303 (433)
T ss_dssp EEEEBC
T ss_pred EEEeCC
Confidence 998765
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00019 Score=51.78 Aligned_cols=153 Identities=8% Similarity=0.055 Sum_probs=97.9
Q ss_pred CcccccCCEEE-EEcCCCeEEEEEcCCCeEEEeecC-CcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccc--cceee
Q 028802 1 MTFAADAMKLL-GTSGDGTLSVCNLRKNTVQTRSEF-SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD--CSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~-~~~~d~~i~v~d~~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~--~~~~~ 76 (203)
|+|+|+++.|+ +...++.|...|.. ++.+..+.. .......|++.+++.++++.-.++.+.++++..... .+...
T Consensus 32 la~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~ 110 (255)
T 3qqz_A 32 LTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKI 110 (255)
T ss_dssp EEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEE
T ss_pred eEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeee
Confidence 57888877554 56778899999988 777766642 234577889988887777766678899998864432 11211
Q ss_pred e-----cCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEcc---CCceeeeec-------cCCCcceEEEEEeCCCCeE-E
Q 028802 77 V-----GLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL---PNRIIQPIA-------EHSEYPIESLALSHDRKFL-G 139 (203)
Q Consensus 77 ~-----~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~---~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l-~ 139 (203)
. .......-.+ ++|.++.|+++.......+|.+. ....+..+. .+ -..+.+++++|....| +
T Consensus 111 ~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~-~~d~S~l~~dp~tg~lli 189 (255)
T 3qqz_A 111 KIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFT-LDDVSGAEFNQQKNTLLV 189 (255)
T ss_dssp ECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCC-SSCCCEEEEETTTTEEEE
T ss_pred ccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccc-cCCceeEEEcCCCCeEEE
Confidence 1 0023345677 89999888888876666666654 111122111 11 1257889999965554 4
Q ss_pred EEeCCCcEEEEeCCCc
Q 028802 140 SISHDSMLKLWDLDDI 155 (203)
Q Consensus 140 ~~~~d~~i~iwd~~~~ 155 (203)
....++.|.++|....
T Consensus 190 LS~~s~~L~~~d~~g~ 205 (255)
T 3qqz_A 190 LSHESRALQEVTLVGE 205 (255)
T ss_dssp EETTTTEEEEECTTCC
T ss_pred EECCCCeEEEEcCCCC
Confidence 5556778888886654
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=98.33 E-value=6.3e-05 Score=56.08 Aligned_cols=151 Identities=9% Similarity=0.045 Sum_probs=96.3
Q ss_pred cccccCCEEEEE-cCCCeEEEEEcCCCeEEE-eecC----C--cccEEEEEE---eeCCCEEEEecC-------------
Q 028802 2 TFAADAMKLLGT-SGDGTLSVCNLRKNTVQT-RSEF----S--EEELTSVVL---MKNGRKVVCGSQ------------- 57 (203)
Q Consensus 2 ~~sp~~~~l~~~-~~d~~i~v~d~~~~~~~~-~~~~----~--~~~i~~l~~---~~~~~~l~~~~~------------- 57 (203)
+|++....++.+ -..++|..|+...+.... .+.. . ...+..|.| .|+++++++...
T Consensus 19 ~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g 98 (334)
T 2p9w_A 19 IYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHG 98 (334)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSS
T ss_pred cCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCC
Confidence 577655555444 478999999987654332 2322 1 124678999 588777775432
Q ss_pred CCeEEEEEcC---Cccccceeee--cCC---------C-CceeEE-EeeCCCEEEEEcCC-CcEEEEEccCCceeeeec-
Q 028802 58 SGTVLLYSWG---YFKDCSDRFV--GLS---------P-NSVDAL-LKLDEDRVITGSEN-GLISLVGILPNRIIQPIA- 119 (203)
Q Consensus 58 d~~i~v~d~~---~~~~~~~~~~--~~~---------~-~~v~~~-~~~~~~~l~~~~~d-g~v~v~d~~~~~~~~~~~- 119 (203)
+..+..||+. +. +.+.... ... . .....+ ..++|+..++++.. +.|..++.. |+.+..+.
T Consensus 99 ~~~v~~~Dl~~~~tg-~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd-G~~~~~~~~ 176 (334)
T 2p9w_A 99 ASSFHSFNLPLSENS-KPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD-GKTVSTFAW 176 (334)
T ss_dssp CCEEEEEESSCCTTC-CCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT-SCCEEEEEE
T ss_pred CCEEEEEcCCcCCCC-CEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC-CCEEeeeee
Confidence 5779999987 43 3322221 100 1 124555 78999999988887 888777755 33332221
Q ss_pred ----cCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 120 ----EHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 120 ----~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
.........|+++|+|..|++....+.|..+|+.+
T Consensus 177 ~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 177 ESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred cCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 11112367899999999888877799999999873
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00041 Score=51.65 Aligned_cols=150 Identities=9% Similarity=-0.048 Sum_probs=90.2
Q ss_pred CcccccCCEEEEE-cCCCeEEEEEcCC----CeEEEeecCCcccEEEEEEeeCCCEE-EEecCCCeEEEEEcCCccccce
Q 028802 1 MTFAADAMKLLGT-SGDGTLSVCNLRK----NTVQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~-~~d~~i~v~d~~~----~~~~~~~~~~~~~i~~l~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~ 74 (203)
++|++.++.|+.+ ...+.|+.+++.+ ......+...-.....+++.+.+..| ++-...+.|.++++.. ....
T Consensus 35 ~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g--~~~~ 112 (316)
T 1ijq_A 35 LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG--VKRK 112 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS--SSEE
T ss_pred EEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC--CceE
Confidence 3577766555444 4568899998875 22222232222345788998755544 4545678999999862 3333
Q ss_pred ee-ecCCCCceeEE-EeeCCCEEEEEcCC--CcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe-CCCcEEE
Q 028802 75 RF-VGLSPNSVDAL-LKLDEDRVITGSEN--GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKL 149 (203)
Q Consensus 75 ~~-~~~~~~~v~~~-~~~~~~~l~~~~~d--g~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i 149 (203)
.+ .. .......+ ++|.+..|+.+... +.|..+++. |.....+....-.....++++|++..|+.+. ..+.|..
T Consensus 113 ~~~~~-~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~ 190 (316)
T 1ijq_A 113 TLFRE-NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 190 (316)
T ss_dssp EEEEC-TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEEC-CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEE
Confidence 33 32 33456777 78877766655542 678888875 3333333211122578899999877776555 5678999
Q ss_pred EeCCC
Q 028802 150 WDLDD 154 (203)
Q Consensus 150 wd~~~ 154 (203)
+++..
T Consensus 191 ~d~dg 195 (316)
T 1ijq_A 191 IDVNG 195 (316)
T ss_dssp EETTS
T ss_pred EecCC
Confidence 99875
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=5e-05 Score=61.32 Aligned_cols=136 Identities=13% Similarity=0.001 Sum_probs=87.5
Q ss_pred eEEEEEcCCCeEEEeecCC----------cccEEEEEEeeCCC---EEEEecCCCeEEEEEcCCccccceeeecCCC---
Q 028802 18 TLSVCNLRKNTVQTRSEFS----------EEELTSVVLMKNGR---KVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP--- 81 (203)
Q Consensus 18 ~i~v~d~~~~~~~~~~~~~----------~~~i~~l~~~~~~~---~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~--- 81 (203)
.|..+|..+++.+..++.. ..++. +....+|+ .++.++.+|.++++|..+. +.+..+.. ..
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG-~~~w~~~~-~~~~~ 349 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENG-NLIVAEKV-DPAVN 349 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTC-CEEEEEES-STTCC
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCC-CEEeeecc-cCCcc
Confidence 6999999999988777532 12221 23334674 5677888999999998753 43332221 10
Q ss_pred ----------Cce--------------------------eEE-EeeCCCEEEEEc-------------------------
Q 028802 82 ----------NSV--------------------------DAL-LKLDEDRVITGS------------------------- 99 (203)
Q Consensus 82 ----------~~v--------------------------~~~-~~~~~~~l~~~~------------------------- 99 (203)
.++ ..+ ++|+..++++.+
T Consensus 350 w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~ 429 (571)
T 2ad6_A 350 VFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATL 429 (571)
T ss_dssp SEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred ccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccc
Confidence 011 122 566666666543
Q ss_pred ------------CCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 100 ------------ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 100 ------------~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
..+.|..||+.+++.+..+.... .+....+...+..++.++.|+.|+.||.++++..
T Consensus 430 ~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~--~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~l 498 (571)
T 2ad6_A 430 AMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF--AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL 498 (571)
T ss_dssp EEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS--CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred eeccCccccCCCCCCeEEEEECCCCCEEEEecCCC--CccceeEEECCCEEEEEcCCCeEEEEECCCCCEE
Confidence 34789999999999887775442 2333333445667777889999999999988754
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=5e-05 Score=56.55 Aligned_cols=134 Identities=13% Similarity=0.033 Sum_probs=80.5
Q ss_pred CeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEe-cCCCeEEEEEcCCcc-ccceeeecCCCCceeEE-EeeCCC
Q 028802 17 GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFK-DCSDRFVGLSPNSVDAL-LKLDED 93 (203)
Q Consensus 17 ~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~d~~i~v~d~~~~~-~~~~~~~~~~~~~v~~~-~~~~~~ 93 (203)
+.|..|+..+++....... ......|+|+|+++.|+++ ...+.|.+|++.... .....+.. ..+ ...+ +.++|+
T Consensus 165 g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~ 241 (322)
T 2fp8_A 165 GRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGH 241 (322)
T ss_dssp EEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSC
T ss_pred ceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCC
Confidence 6688888766654322211 2234578999999866655 556899999986321 11122222 223 5666 788998
Q ss_pred EEEEEcC----------CCcEEEEEccCCceeeeeccCCC---cceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 94 RVITGSE----------NGLISLVGILPNRIIQPIAEHSE---YPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 94 ~l~~~~~----------dg~v~v~d~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
++++... .+.|..+|. .++.+..+....+ ..++.+++ .+++.+++....+.|.++++...
T Consensus 242 l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 242 FWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp EEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred EEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 7666544 456888886 4676666654321 14666666 45555555557888999998643
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00013 Score=57.61 Aligned_cols=150 Identities=7% Similarity=0.074 Sum_probs=90.3
Q ss_pred Ccccc-cCCEEEEEc-CCCeEEEEEcCCCeEEEeecCC---cccEEEEEE-------eeCCCEEEEecCCC-------eE
Q 028802 1 MTFAA-DAMKLLGTS-GDGTLSVCNLRKNTVQTRSEFS---EEELTSVVL-------MKNGRKVVCGSQSG-------TV 61 (203)
Q Consensus 1 l~~sp-~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~---~~~i~~l~~-------~~~~~~l~~~~~d~-------~i 61 (203)
|+|+| ++..|+++. ..+.|+++|+.++.+...+... ......|+| ++++..|+++...+ .+
T Consensus 144 la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V 223 (496)
T 3kya_A 144 LAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSV 223 (496)
T ss_dssp EEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEE
T ss_pred EEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceE
Confidence 46788 355555544 3467999999887665544332 235889999 99999777766543 25
Q ss_pred EEEEcCCccccc-----eeeecCCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEcc-------CCce-----------ee
Q 028802 62 LLYSWGYFKDCS-----DRFVGLSPNSVDAL-LKLD-EDRVITGSENGLISLVGIL-------PNRI-----------IQ 116 (203)
Q Consensus 62 ~v~d~~~~~~~~-----~~~~~~~~~~v~~~-~~~~-~~~l~~~~~dg~v~v~d~~-------~~~~-----------~~ 116 (203)
.+++....+... ..+.. ...+ ..+ .+|+ +.++++-...+.|..+|+. ++.. ..
T Consensus 224 ~~i~r~~~G~~~~~~~~~~v~~-~~~p-~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~ 301 (496)
T 3kya_A 224 YIIKRNADGTFDDRSDIQLIAA-YKQC-NGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFK 301 (496)
T ss_dssp EEEECCTTSCCSTTSCEEEEEE-ESCC-CCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEE
T ss_pred EEEecCCCCceeecccceeecc-CCCc-eEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccc
Confidence 666533212221 22222 2222 334 7885 4545555667889999987 4543 11
Q ss_pred e-eccCCCcceEEEEEeCCCCeEEEE-eCCCcEEEEeC
Q 028802 117 P-IAEHSEYPIESLALSHDRKFLGSI-SHDSMLKLWDL 152 (203)
Q Consensus 117 ~-~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~iwd~ 152 (203)
. +........+.|+|+|+|++|+.+ .....|+.++.
T Consensus 302 ~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 302 QLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp EEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred eeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 1 222212246789999999965544 46678888664
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=4.2e-05 Score=61.76 Aligned_cols=128 Identities=10% Similarity=-0.029 Sum_probs=83.0
Q ss_pred EEEEEcCCCeEEEEEcCCCeEEEeecCCc-------------ccE--------------------------EEEEEeeCC
Q 028802 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSE-------------EEL--------------------------TSVVLMKNG 49 (203)
Q Consensus 9 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-------------~~i--------------------------~~l~~~~~~ 49 (203)
.++.++.+|.++++|..+++.+....... .++ ..++++|+.
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 397 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES 397 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence 56778889999999999998876654221 111 235678877
Q ss_pred CEEEEec-------------------------------------CCCeEEEEEcCCccccceeeecCCCCceeEE-EeeC
Q 028802 50 RKVVCGS-------------------------------------QSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLD 91 (203)
Q Consensus 50 ~~l~~~~-------------------------------------~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~ 91 (203)
.+|++.. ..+.|..||..+. +.+-.+.. ...+... +...
T Consensus 398 g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG-~~~W~~~~--~~~~~~~~~~t~ 474 (571)
T 2ad6_A 398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTG-KAKWTKWE--KFAAWGGTLYTK 474 (571)
T ss_dssp TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTC-CEEEEEEE--SSCCCSBCEEET
T ss_pred CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCC-CEEEEecC--CCCccceeEEEC
Confidence 7776643 2467888888753 44333332 2222222 4445
Q ss_pred CCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEE
Q 028802 92 EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLG 139 (203)
Q Consensus 92 ~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 139 (203)
+..+++++.++.|+++|..+++.+..+.......-.-+.+..+|+.++
T Consensus 475 gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 475 GGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEE
Confidence 677888999999999999999999888755321112244557776544
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00037 Score=51.51 Aligned_cols=148 Identities=16% Similarity=0.127 Sum_probs=85.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCC--CeEEEEEcCCccccceeeec
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS--GTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d--~~i~v~d~~~~~~~~~~~~~ 78 (203)
++|+|+++++++-...+.|..|+.... ....+.. ...+..+++.++++++++.... ..|..++... +.. ..+..
T Consensus 37 ia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~-~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~-g~~-~~~~~ 112 (306)
T 2p4o_A 37 LASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATV-EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSD-GTV-ETLLT 112 (306)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTTCC-EEEEEEC-SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTT-SCE-EEEEE
T ss_pred EEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeC-CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCC-CeE-EEEEe
Confidence 468899887777667889999997754 3333322 3568899999999966654332 2466666543 232 22221
Q ss_pred C-CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCce-eeee-------cc-CCCcceEEEEEeCCCCeEEEEe-CCCc
Q 028802 79 L-SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI-IQPI-------AE-HSEYPIESLALSHDRKFLGSIS-HDSM 146 (203)
Q Consensus 79 ~-~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~-~~~~-------~~-~~~~~i~~~~~~~~~~~l~~~~-~d~~ 146 (203)
. .......+ ..+.+..+++-...+.|+++|...+.. +... .. ..-.....+ +|++.+|+.+. ..+.
T Consensus 113 ~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~ 190 (306)
T 2p4o_A 113 LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKML 190 (306)
T ss_dssp CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTE
T ss_pred CCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCE
Confidence 0 11112233 334444444444588899999765421 1100 00 101134445 88887766554 6788
Q ss_pred EEEEeCCC
Q 028802 147 LKLWDLDD 154 (203)
Q Consensus 147 i~iwd~~~ 154 (203)
|.+|++..
T Consensus 191 I~~~~~~~ 198 (306)
T 2p4o_A 191 LLRIPVDS 198 (306)
T ss_dssp EEEEEBCT
T ss_pred EEEEEeCC
Confidence 99999875
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00057 Score=51.62 Aligned_cols=151 Identities=12% Similarity=0.019 Sum_probs=91.3
Q ss_pred CcccccCCEEEEE-cCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEE-EEecCCCeEEEEEcCCccccceeee-
Q 028802 1 MTFAADAMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRFV- 77 (203)
Q Consensus 1 l~~sp~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~- 77 (203)
|+|++..+.|+.+ ...+.|+.+++........+.........+++.+.+..| ++-...+.|.++++.. .....+.
T Consensus 78 l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG--~~~~~l~~ 155 (349)
T 3v64_C 78 LDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG--AHRKVLLW 155 (349)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEEC
T ss_pred EEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCC--CceEEEEe
Confidence 3566655555443 456778888877654333333223345678888755544 5555578899999863 3333332
Q ss_pred cCCCCceeEE-EeeCCCEEEEEcC-C-CcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe-CCCcEEEEeCC
Q 028802 78 GLSPNSVDAL-LKLDEDRVITGSE-N-GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLD 153 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~-d-g~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~ 153 (203)
. .......+ ++|.+..|+.... . +.|..+++.. .....+..........++++|++..|+.+. ..+.|..+++.
T Consensus 156 ~-~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d 233 (349)
T 3v64_C 156 Q-SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 233 (349)
T ss_dssp T-TCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred C-CCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC-CCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 2 33456777 7886666665543 4 6788888763 333333221122578899999777766554 56789999987
Q ss_pred Cc
Q 028802 154 DI 155 (203)
Q Consensus 154 ~~ 155 (203)
..
T Consensus 234 G~ 235 (349)
T 3v64_C 234 GS 235 (349)
T ss_dssp SC
T ss_pred CC
Confidence 53
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00038 Score=50.21 Aligned_cols=150 Identities=9% Similarity=0.105 Sum_probs=91.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe---EEEeec------CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCC--c
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT---VQTRSE------FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY--F 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~---~~~~~~------~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~--~ 69 (203)
|++.+++.++++.-.++.+.++.+.... .+.... ........|+|+|.++.|+++.......+|.+.. .
T Consensus 75 Ia~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~ 154 (255)
T 3qqz_A 75 IEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLS 154 (255)
T ss_dssp EEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTC
T ss_pred eEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEccccc
Confidence 3566777766666667889999876432 122221 1234568999999998888777665555655531 1
Q ss_pred cccceeee------cCCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCCceeeeeccCCC--------cceEEEEEeC
Q 028802 70 KDCSDRFV------GLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQPIAEHSE--------YPIESLALSH 133 (203)
Q Consensus 70 ~~~~~~~~------~~~~~~v~~~-~~~~-~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~--------~~i~~~~~~~ 133 (203)
...+..+. ......+..+ ++|. +++++.+.....|.++|.. ++.+..+....+ .....|+|.+
T Consensus 155 ~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~ 233 (255)
T 3qqz_A 155 SNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDA 233 (255)
T ss_dssp SSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECT
T ss_pred CCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECC
Confidence 11122211 0022346777 7875 4556666677888899965 556555433311 1568999999
Q ss_pred CCCeEEEEeCCCcEEEEeC
Q 028802 134 DRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 134 ~~~~l~~~~~d~~i~iwd~ 152 (203)
+|+..++ +.-..+++|.-
T Consensus 234 ~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 234 SGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp TCCEEEE-ETTTEEEEEEC
T ss_pred CCCEEEE-cCCceEEEEEe
Confidence 9975444 66666776653
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.19 E-value=9.3e-05 Score=59.88 Aligned_cols=56 Identities=14% Similarity=0.157 Sum_probs=40.8
Q ss_pred CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 101 NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 101 dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.|.|..||+.+++.+....... ++..-.+...+..++.++.|+.|+.||.++++..
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~l 520 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL--PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL 520 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS--CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cceEEEEECCCCCEEEEecCCC--CCcccceEeCCCEEEEECCCCcEEEEECCCCCEE
Confidence 5789999999999887775442 2222222334667778899999999999988754
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00025 Score=59.12 Aligned_cols=149 Identities=9% Similarity=0.018 Sum_probs=81.3
Q ss_pred CcccccCCEEEEEcCC-----CeEEEEEcCCCeE--EEeec-CCcccEEEEEEeeCCCEEEEecC---CCeEEEEEcCCc
Q 028802 1 MTFAADAMKLLGTSGD-----GTLSVCNLRKNTV--QTRSE-FSEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGYF 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d-----~~i~v~d~~~~~~--~~~~~-~~~~~i~~l~~~~~~~~l~~~~~---d~~i~v~d~~~~ 69 (203)
++|+|||+.|+....+ ..|+++++.++.. ...+. ........+.|+|||++|+..+. ...|+++|+...
T Consensus 226 ~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 226 IVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp CEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred EEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 4799999988777654 3688888876531 12222 22334668899999998876553 346888888643
Q ss_pred cccc--eeeecCCCCceeEE-EeeCCCEEEEEcC-C----CcEEEEEccCC-ceee-eeccCCCcceEEEEEeCCCCeE-
Q 028802 70 KDCS--DRFVGLSPNSVDAL-LKLDEDRVITGSE-N----GLISLVGILPN-RIIQ-PIAEHSEYPIESLALSHDRKFL- 138 (203)
Q Consensus 70 ~~~~--~~~~~~~~~~v~~~-~~~~~~~l~~~~~-d----g~v~v~d~~~~-~~~~-~~~~~~~~~i~~~~~~~~~~~l- 138 (203)
.... ..+..........+ |+ .+..|+..+. + ..|.++++.++ .... .+.......+..+.+ .+.+|
T Consensus 306 ~~~~~~~~l~~~~~~~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv 382 (751)
T 2xe4_A 306 NAHNTLEIVRPREKGVRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLV 382 (751)
T ss_dssp TTCCCEEESSCCCTTCCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEE
T ss_pred CCCceeEEeecCCCCceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEE
Confidence 1122 33332022333333 22 3666655443 2 25777777642 2222 232221213444444 45555
Q ss_pred EEEeCCCc--EEEEeC
Q 028802 139 GSISHDSM--LKLWDL 152 (203)
Q Consensus 139 ~~~~~d~~--i~iwd~ 152 (203)
++...++. |.++++
T Consensus 383 ~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 383 VAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEETTEEEEEEEEC
T ss_pred EEEEeCCEEEEEEEec
Confidence 45556665 555564
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.18 E-value=0.001 Score=51.20 Aligned_cols=151 Identities=10% Similarity=-0.057 Sum_probs=90.6
Q ss_pred CcccccCCEEEEE-cCCCeEEEEEcCCC----eEEEeecCCcccEEEEEEeeCC-CEEEEecCCCeEEEEEcCCccccce
Q 028802 1 MTFAADAMKLLGT-SGDGTLSVCNLRKN----TVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~-~~d~~i~v~d~~~~----~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~ 74 (203)
|+|++..+.|+.+ ...+.|+.+++... .....+.........|++.+.+ +++++-...+.|.+.++.. ....
T Consensus 117 l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g--~~~~ 194 (400)
T 3p5b_L 117 LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG--VKRK 194 (400)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT--CSEE
T ss_pred EeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC--CceE
Confidence 3566655555444 34577777777642 1222333334557789998844 4445555678899988763 3333
Q ss_pred e-eecCCCCceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe-CCCcEEE
Q 028802 75 R-FVGLSPNSVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKL 149 (203)
Q Consensus 75 ~-~~~~~~~~v~~~-~~~~~~~l~~~~~--dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i 149 (203)
. +.. .......+ ++|.+..|+.... .+.|...++........+... -.....|++++++..|+.+. ..+.|..
T Consensus 195 ~l~~~-~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~-l~~P~glavd~~~~~lY~aD~~~~~I~~ 272 (400)
T 3p5b_L 195 TLFRE-NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN-IQWPNGITLDLLSGRLYWVDSKLHSISS 272 (400)
T ss_dssp EEEEC-SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSS-CSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEeC-CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECC-CCceEEEEEEeCCCEEEEEECCCCEEEE
Confidence 3 332 33446777 7887776666553 367888887643322222222 12578999999887776665 5678999
Q ss_pred EeCCCc
Q 028802 150 WDLDDI 155 (203)
Q Consensus 150 wd~~~~ 155 (203)
+|+...
T Consensus 273 ~d~dG~ 278 (400)
T 3p5b_L 273 IDVNGG 278 (400)
T ss_dssp EETTSC
T ss_pred EeCCCC
Confidence 998654
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00043 Score=53.08 Aligned_cols=152 Identities=11% Similarity=-0.002 Sum_probs=91.1
Q ss_pred CcccccCCEEEEE-cCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEE-EEecCCCeEEEEEcCCccccceeeec
Q 028802 1 MTFAADAMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
|+|++.++.|+.+ ...+.|+.+++........+.........+++.+.+..| ++-...+.|.++++.. .....+..
T Consensus 121 l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg--~~~~~l~~ 198 (386)
T 3v65_B 121 LDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG--AHRKVLLW 198 (386)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTS--CSCEEEEC
T ss_pred EEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCC--CceEEeec
Confidence 3567655555443 456788888877654433333323345678888755554 4445567888888752 33333322
Q ss_pred CCCCceeEE-EeeCCCEEEEEcC-C-CcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe-CCCcEEEEeCCC
Q 028802 79 LSPNSVDAL-LKLDEDRVITGSE-N-GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLDD 154 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~-d-g~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~ 154 (203)
........+ ++|.+..|+.... . +.|..+++............ ......++|+|++..|+.+. ..+.|..+++..
T Consensus 199 ~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~-~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG 277 (386)
T 3v65_B 199 QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTH-LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 277 (386)
T ss_dssp SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS-CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECC-CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 033456777 7887776666554 3 67888887643222222222 22578899998777666554 567899999865
Q ss_pred c
Q 028802 155 I 155 (203)
Q Consensus 155 ~ 155 (203)
.
T Consensus 278 ~ 278 (386)
T 3v65_B 278 S 278 (386)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00022 Score=57.87 Aligned_cols=56 Identities=14% Similarity=-0.051 Sum_probs=39.7
Q ss_pred CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 101 NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 101 dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.|.|..||+.+++.+....... +...-.+...+..++.++.|+.|+.||.++++..
T Consensus 452 ~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~l 507 (599)
T 1w6s_A 452 LGQIKAYNAITGDYKWEKMERF--AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLL 507 (599)
T ss_dssp CEEEEEECTTTCCEEEEEEESS--CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cCeEEEEECCCCCEEeEecCCC--CccCcceEecCCEEEEECCCCeEEEEECCCCCEE
Confidence 4779999999999887765331 2222223335667777889999999999988754
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=9.2e-05 Score=59.90 Aligned_cols=81 Identities=14% Similarity=0.094 Sum_probs=51.7
Q ss_pred CCeEEEEEcCCccccceeeecCCCCceeE-EEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCC
Q 028802 58 SGTVLLYSWGYFKDCSDRFVGLSPNSVDA-LLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK 136 (203)
Q Consensus 58 d~~i~v~d~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 136 (203)
.|.|..||+.+. +.+-.... .. +... .....+.+++.++.|+.|+.||.++|+.+..+.........-+.|..+|+
T Consensus 465 ~G~l~A~D~~tG-~~~W~~~~-~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~ 541 (582)
T 1flg_A 465 VGSLRAMDPVSG-KVVWEHKE-HL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE 541 (582)
T ss_dssp SEEEEEECTTTC-CEEEEEEE-SS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred cceEEEEECCCC-CEEEEecC-CC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCE
Confidence 577888888754 33333332 21 2221 13445778888999999999999999999888765431122366777886
Q ss_pred -eEEEE
Q 028802 137 -FLGSI 141 (203)
Q Consensus 137 -~l~~~ 141 (203)
|+++.
T Consensus 542 qYv~~~ 547 (582)
T 1flg_A 542 QYLGVT 547 (582)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 44433
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00016 Score=59.53 Aligned_cols=150 Identities=18% Similarity=0.158 Sum_probs=95.7
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCc----ccEEE-EEEeeCCCEEEEecC------CCeEEEEEcCCccccce
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSE----EELTS-VVLMKNGRKVVCGSQ------SGTVLLYSWGYFKDCSD 74 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~----~~i~~-l~~~~~~~~l~~~~~------d~~i~v~d~~~~~~~~~ 74 (203)
.+..|++++.++.|..+|..+|+.+..+.... ..+.+ ..+ .+ ..++++.. ++.|+.+|..+. +.+-
T Consensus 116 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~-~~v~vg~~~~~~~~~g~v~a~D~~tG-~~~W 192 (668)
T 1kv9_A 116 WGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV-VK-GKVIIGNGGAEYGVRGFVSAYDADTG-KLAW 192 (668)
T ss_dssp EBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE-ET-TEEEECCBCTTTCCBCEEEEEETTTC-CEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEE-EC-CEEEEeCCCCCcCCCCEEEEEECCCC-cEEE
Confidence 35678888889999999999999887765421 11111 111 13 35555543 588999998764 4333
Q ss_pred eeecC--CC---------------------------Cce-eEE-EeeCCCEEEEEcCCC-------------------cE
Q 028802 75 RFVGL--SP---------------------------NSV-DAL-LKLDEDRVITGSENG-------------------LI 104 (203)
Q Consensus 75 ~~~~~--~~---------------------------~~v-~~~-~~~~~~~l~~~~~dg-------------------~v 104 (203)
.+... .. ..+ ..+ +.|...+++.++.++ .|
T Consensus 193 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v 272 (668)
T 1kv9_A 193 RFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSI 272 (668)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred EecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 33210 00 011 123 677888888887765 39
Q ss_pred EEEEccCCceeeeeccCC-C-------cceEEEEEeCCCC---eEEEEeCCCcEEEEeCCCcccC
Q 028802 105 SLVGILPNRIIQPIAEHS-E-------YPIESLALSHDRK---FLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 105 ~v~d~~~~~~~~~~~~~~-~-------~~i~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
..+|..+|+.+..++... . .++....+..+|+ .|+.++.+|.++++|..+++..
T Consensus 273 ~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 273 LAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI 337 (668)
T ss_dssp EEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred EEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence 999999999987775421 1 1233333444665 6888889999999999988754
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.04 E-value=0.0019 Score=48.67 Aligned_cols=143 Identities=13% Similarity=0.160 Sum_probs=92.6
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeC----CC---EEEEecC---CCeEEEEEcCCcccccee
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN----GR---KVVCGSQ---SGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~----~~---~l~~~~~---d~~i~v~d~~~~~~~~~~ 75 (203)
...+++.....+-|.+||+ +|+.++.+.. +.++.+..-|+ ++ +++++.. +++|.+|++......+..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 3455666667789999999 7888888764 55777776663 22 2333333 578999988422223333
Q ss_pred eecC------CCCceeEE--E-eeC-CC-EEEEEcCCCcEEEEEcc-------CCceeeeeccCCCcceEEEEEeCCCCe
Q 028802 76 FVGL------SPNSVDAL--L-KLD-ED-RVITGSENGLISLVGIL-------PNRIIQPIAEHSEYPIESLALSHDRKF 137 (203)
Q Consensus 76 ~~~~------~~~~v~~~--~-~~~-~~-~l~~~~~dg~v~v~d~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~ 137 (203)
+... ....+..+ + +|. +. ++++...+|.+..|.+. +++.+.++.... .+..++..+...+
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs--q~EgcvvDd~~g~ 193 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNS--QTEGMAADDEYGR 193 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSS--CEEEEEEETTTTE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCC--CcceEEEcCCCCe
Confidence 3110 11233333 3 564 44 57777788999999883 335566676653 6889999998899
Q ss_pred EEEEeCCCcEEEEeCC
Q 028802 138 LGSISHDSMLKLWDLD 153 (203)
Q Consensus 138 l~~~~~d~~i~iwd~~ 153 (203)
|+.+-.+..|..++.+
T Consensus 194 Lyv~eEd~GIw~~da~ 209 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAE 209 (355)
T ss_dssp EEEEETTTEEEEEECS
T ss_pred EEEecccceEEEEeCC
Confidence 9999988777777754
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00039 Score=56.40 Aligned_cols=130 Identities=10% Similarity=0.046 Sum_probs=80.6
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCc-------------ccE--------------------------EEEEEeeC
Q 028802 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSE-------------EEL--------------------------TSVVLMKN 48 (203)
Q Consensus 8 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-------------~~i--------------------------~~l~~~~~ 48 (203)
..++.++.+|.++++|..+++++....... .++ ..++++|+
T Consensus 324 ~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~ 403 (599)
T 1w6s_A 324 KLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPK 403 (599)
T ss_dssp EEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred EEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCC
Confidence 456778899999999999998876553211 111 13566666
Q ss_pred CCEEEEec---------------------------------------CCCeEEEEEcCCccccceeeecCCCCcee-EEE
Q 028802 49 GRKVVCGS---------------------------------------QSGTVLLYSWGYFKDCSDRFVGLSPNSVD-ALL 88 (203)
Q Consensus 49 ~~~l~~~~---------------------------------------~d~~i~v~d~~~~~~~~~~~~~~~~~~v~-~~~ 88 (203)
..++++.. ..|.|..||+.+. +.+-.... ..+.. ...
T Consensus 404 ~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG-~~~W~~~~--~~~~~~g~~ 480 (599)
T 1w6s_A 404 RELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITG-DYKWEKME--RFAVWGGTM 480 (599)
T ss_dssp TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTC-CEEEEEEE--SSCCCSBCE
T ss_pred CCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCC-CEEeEecC--CCCccCcce
Confidence 66554421 2366777777653 33222221 11111 113
Q ss_pred eeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCC-eEEE
Q 028802 89 KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGS 140 (203)
Q Consensus 89 ~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~ 140 (203)
...+.+++.++.++.|+.||.++|+.+..++........-+.+..+|+ |+++
T Consensus 481 ~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~ 533 (599)
T 1w6s_A 481 ATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAI 533 (599)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred EecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEE
Confidence 446778888999999999999999999888655332223356667876 4443
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0026 Score=47.44 Aligned_cols=149 Identities=10% Similarity=-0.029 Sum_probs=87.2
Q ss_pred cccccCCEEEE-EcCCCeEEEEEcCCCeEE-EeecCCcccEEEEEEeeCCC-EEEEecCCCeEEEEEcCCccccceeee-
Q 028802 2 TFAADAMKLLG-TSGDGTLSVCNLRKNTVQ-TRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSDRFV- 77 (203)
Q Consensus 2 ~~sp~~~~l~~-~~~d~~i~v~d~~~~~~~-~~~~~~~~~i~~l~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~- 77 (203)
+|++..+.|+. -...+.|+.+++..+... ..+...-.....+++.+.+. ++++-...+.|.++++.. .....+.
T Consensus 41 d~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG--~~~~~l~~ 118 (318)
T 3sov_A 41 DFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDG--SLRKVLFW 118 (318)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEEC
T ss_pred EEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCC--CcEEEEEe
Confidence 46665444433 344567777776654211 11111123455788887554 445555678899999863 3333332
Q ss_pred cCCCCceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe-CCCcEEEEeCC
Q 028802 78 GLSPNSVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLD 153 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~--dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~ 153 (203)
. .......+ +.|.+..|+.... .+.|..+++. |.....+....-.....++++|++..|+.+. ..+.|..+++.
T Consensus 119 ~-~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d 196 (318)
T 3sov_A 119 Q-ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD 196 (318)
T ss_dssp S-SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred C-CCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCC
Confidence 3 34456777 7887666666653 5778888875 3333233211122568899999777766554 56789999987
Q ss_pred C
Q 028802 154 D 154 (203)
Q Consensus 154 ~ 154 (203)
.
T Consensus 197 G 197 (318)
T 3sov_A 197 G 197 (318)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.001 Score=52.61 Aligned_cols=156 Identities=11% Similarity=0.047 Sum_probs=89.4
Q ss_pred CcccccCC-EEEEEcCCCeEEEEEcC-------CCeE-----------EEe-ec-CCcccEEEEEEeeCCCEEEEe-cCC
Q 028802 1 MTFAADAM-KLLGTSGDGTLSVCNLR-------KNTV-----------QTR-SE-FSEEELTSVVLMKNGRKVVCG-SQS 58 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~i~v~d~~-------~~~~-----------~~~-~~-~~~~~i~~l~~~~~~~~l~~~-~~d 58 (203)
++++|++. ++++-..++.|..+|+. ++.. ... +. ........|+|+|+++.|+.+ ...
T Consensus 252 iavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~ 331 (496)
T 3kya_A 252 ATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINN 331 (496)
T ss_dssp EEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTT
T ss_pred EEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCC
Confidence 35677444 45555677889999987 4432 111 11 223446789999999965544 457
Q ss_pred CeEEEEEcCCccccc---eeeecCC---C------------Ccee-EEE-e-------eCCCEEEEEcCCCcEEEEEccC
Q 028802 59 GTVLLYSWGYFKDCS---DRFVGLS---P------------NSVD-ALL-K-------LDEDRVITGSENGLISLVGILP 111 (203)
Q Consensus 59 ~~i~v~d~~~~~~~~---~~~~~~~---~------------~~v~-~~~-~-------~~~~~l~~~~~dg~v~v~d~~~ 111 (203)
+.|+.++.......+ ..+.+ . . .... .++ . +.+.++++-...+.|+.++ .+
T Consensus 332 h~I~kid~dg~~~~~~~~~~~aG-~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~ 409 (496)
T 3kya_A 332 HYFMRSDYDEIKKEFITPYNFVG-GYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PE 409 (496)
T ss_dssp TEEEEEEEETTTTEECCCEEEEE-BTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TT
T ss_pred CEEEEEecCCCcceecccEEecC-CCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CC
Confidence 788887764211111 12221 1 0 1123 333 3 4556666666678899998 44
Q ss_pred CceeeeeccC--------------CC---------cceEEEEEeCC-CCeEEEEeCCCcEEEEeCCCcccCC
Q 028802 112 NRIIQPIAEH--------------SE---------YPIESLALSHD-RKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 112 ~~~~~~~~~~--------------~~---------~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
|. +.++.+. .. .....|+++++ +..+++-.....|+.+++.....-+
T Consensus 410 G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 410 GI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp CB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred CC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence 53 3333221 00 13678999997 6666666678889999986655443
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.003 Score=47.65 Aligned_cols=151 Identities=11% Similarity=-0.044 Sum_probs=87.8
Q ss_pred cccccCCEE-EEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC-C-CeEEEEEcCCccccceeeec
Q 028802 2 TFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-S-GTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d-~~i~v~d~~~~~~~~~~~~~ 78 (203)
++.+.+..| ++-...+.|.+.++........+...-.....+++.|.+..|+.+.. . +.|..+++. +.....+..
T Consensus 122 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~ 199 (349)
T 3v64_C 122 AVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--GSGRRIIAD 199 (349)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEESCC
T ss_pred EEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC--CCCcEEEEE
Confidence 455544444 44445677888887654333333333455789999996666555443 4 778888875 233333321
Q ss_pred CCCCceeEE-EeeCCCEEEEEc-CCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 79 LSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~-~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
........+ ++|++..|+.+. ..+.|..+++........+... ......+++ ..+..+++-...+.|..++..++.
T Consensus 200 ~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~-~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 200 THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG-LPHPFAITV-FEDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-CSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC-CCCceEEEE-ECCEEEEecCCCCeEEEEEccCCC
Confidence 023445677 898777776665 4678999997643322223222 224677887 344445555567888888854443
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.002 Score=49.29 Aligned_cols=151 Identities=11% Similarity=-0.044 Sum_probs=87.4
Q ss_pred cccccCCEE-EEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC-C-CeEEEEEcCCccccceeeec
Q 028802 2 TFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-S-GTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d-~~i~v~d~~~~~~~~~~~~~ 78 (203)
++++.+..| ++-...+.|.+.++........+...-.....|++.|.+..|+.+.. . +.|..+++. +.....+..
T Consensus 165 avd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~ 242 (386)
T 3v65_B 165 AVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--GSGRRIIAD 242 (386)
T ss_dssp EEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEEEEC
T ss_pred EEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC--CCCcEEEEE
Confidence 455544444 33344567777776544332233333356789999987766665543 3 678888875 333333322
Q ss_pred CCCCceeEE-EeeCCCEEEEEc-CCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 79 LSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~-~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
........+ ++|++..|+.+. ..+.|..+++........+... ......+++ ..+..+++....+.|..++..++.
T Consensus 243 ~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~-~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 243 THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG-LPHPFAITV-FEDSLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS-CSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC-CCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCc
Confidence 033445677 888777666654 4677999997643332223222 224677888 344455555577888888854543
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0013 Score=51.29 Aligned_cols=150 Identities=7% Similarity=-0.014 Sum_probs=88.2
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCCeEEEee-c-CCcccEEEEEEeeCCCEEEEe-cCCCeEEEEEcCCcccc---c
Q 028802 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRS-E-FSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDC---S 73 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~-~~~~~i~~l~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~---~ 73 (203)
++++| +|.++++-..++.|+.++..++.....+ . +.......|+|+|+++.|+++ ...+.|..+++...... .
T Consensus 233 iavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~ 312 (433)
T 4hw6_A 233 CAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVP 312 (433)
T ss_dssp CEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCC
T ss_pred EEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcE
Confidence 46778 5665555556788999998866552222 1 112223469999999855554 45688999886521111 1
Q ss_pred eeeecCC---------------CCceeEE-E---------eeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC------
Q 028802 74 DRFVGLS---------------PNSVDAL-L---------KLDEDRVITGSENGLISLVGILPNRIIQPIAEHS------ 122 (203)
Q Consensus 74 ~~~~~~~---------------~~~v~~~-~---------~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~------ 122 (203)
..+.+ . -.....+ + .+++.++++-...+.|+.++. +|... ++.+..
T Consensus 313 ~~~ag-~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~-t~~G~g~~~~~G 389 (433)
T 4hw6_A 313 YIVCG-QHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT-TYAGRGNSREWG 389 (433)
T ss_dssp EEEEE-CTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE-EEECCCTTCSSC
T ss_pred EEEEe-cCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE-EEEeCCCCCccc
Confidence 12211 1 1123445 5 456666666666778988884 45333 222110
Q ss_pred -----------CcceEEEEEe-CCCCeEEEEeCCCcEEEEeCC
Q 028802 123 -----------EYPIESLALS-HDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 123 -----------~~~i~~~~~~-~~~~~l~~~~~d~~i~iwd~~ 153 (203)
-.....|+++ ++|..+++-.....|+.++++
T Consensus 390 ~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 390 YVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred cCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 0136789999 566666666677888888764
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0022 Score=47.23 Aligned_cols=130 Identities=8% Similarity=0.011 Sum_probs=77.3
Q ss_pred EEEEEcCCCeEEEEEcCCCeE-EEee---------cCCcccEEEEEEeeCCCEEEEec-CCCeEEEEEcCCcccc--cee
Q 028802 9 KLLGTSGDGTLSVCNLRKNTV-QTRS---------EFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDC--SDR 75 (203)
Q Consensus 9 ~l~~~~~d~~i~v~d~~~~~~-~~~~---------~~~~~~i~~l~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~--~~~ 75 (203)
.+++-...+.|+++|..++.. +... ...-.....| +|++..|+++. ..+.|.+|++...+.. ...
T Consensus 130 ~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~ 207 (306)
T 2p4o_A 130 YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEI 207 (306)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEE
T ss_pred EEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEE
Confidence 344444578899998775421 1100 0111234555 88887665554 5789999998632221 122
Q ss_pred eecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceee--eeccCCCcceEEEEEe---CCCCeEEEEeCC
Q 028802 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQ--PIAEHSEYPIESLALS---HDRKFLGSISHD 144 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~--~~~~~~~~~i~~~~~~---~~~~~l~~~~~d 144 (203)
+.. ......+ ++++|+++++....+.|.+++.. ++... .+..... ..++++|. |++..|+..+..
T Consensus 208 ~~~--~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~-~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 208 FVE--QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVI-GSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp EEE--SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCT-TEEEEEECCSTTTTTEEEEEECT
T ss_pred Eec--cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccC-CceEEEEecccCCCCEEEEECCC
Confidence 221 1234455 78999877776667889999975 65532 3333312 57899998 888877766543
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0048 Score=51.75 Aligned_cols=151 Identities=9% Similarity=-0.052 Sum_probs=88.2
Q ss_pred cccccCCEEE-EEcCCCeEEEEEcCCC----eEEEeecCCcccEEEEEEeeCCCEEE-EecCCCeEEEEEcCCcccccee
Q 028802 2 TFAADAMKLL-GTSGDGTLSVCNLRKN----TVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~~~l~-~~~~d~~i~v~d~~~~----~~~~~~~~~~~~i~~l~~~~~~~~l~-~~~~d~~i~v~d~~~~~~~~~~ 75 (203)
+|++....|+ +-...+.|+.+++... .....+.........|++.+.+..|+ +-...+.|.+.++.. .....
T Consensus 430 ~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG--~~~~~ 507 (791)
T 3m0c_C 430 DTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG--VKRKT 507 (791)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS--SSEEE
T ss_pred eecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC--CeEEE
Confidence 4555444443 3344566777776542 12222332334566889988775555 445578999999863 33333
Q ss_pred eecCCCCceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe-CCCcEEEEe
Q 028802 76 FVGLSPNSVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWD 151 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~--dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd 151 (203)
+..........| +.|....|+.... .+.|.+.++........+... ......|++++.+..|+.+. ....|..++
T Consensus 508 l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~-l~~P~GLavD~~~~~LYwaD~~~~~I~~~d 586 (791)
T 3m0c_C 508 LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN-IQWPNGITLDLLSGRLYWVDSKLHSISSID 586 (791)
T ss_dssp EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCC-CCCceEEEEecCCCeEEEEeCCCCcEEEEe
Confidence 332034456777 7887666666653 267888887643333233322 23678999998777766554 556788888
Q ss_pred CCCc
Q 028802 152 LDDI 155 (203)
Q Consensus 152 ~~~~ 155 (203)
+...
T Consensus 587 ~dG~ 590 (791)
T 3m0c_C 587 VNGG 590 (791)
T ss_dssp TTSC
T ss_pred cCCC
Confidence 8654
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0055 Score=45.63 Aligned_cols=152 Identities=9% Similarity=-0.090 Sum_probs=88.8
Q ss_pred cccccCCEE-EEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC--CCeEEEEEcCCccccceeeec
Q 028802 2 TFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ--SGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~ 78 (203)
++.+.+..| ++-...+.|.++++........+.........+++.|.+..|+.+.. .+.|..+++. +.....+..
T Consensus 85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~ 162 (318)
T 3sov_A 85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD--GSSRFIIIN 162 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT--SCSCEEEEC
T ss_pred EEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC--CCCeEEEEE
Confidence 445433333 34345577888887654322223333456789999997666666553 5778888875 333333322
Q ss_pred CCCCceeEE-EeeCCCEEEEEc-CCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 79 LSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~-~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
..-.....+ ++|++..|+.+. ..+.|..+++........+... ......+++.. +..+++-...+.|..++..++.
T Consensus 163 ~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~-~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 163 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS-LPHPFALTLFE-DILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSC-CSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCC-CCCceEEEEeC-CEEEEEecCCCeEEEEECCCCC
Confidence 023445677 898777777665 4678999998643222222222 22466777753 3444555567889999986664
Q ss_pred c
Q 028802 157 K 157 (203)
Q Consensus 157 ~ 157 (203)
.
T Consensus 241 ~ 241 (318)
T 3sov_A 241 G 241 (318)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0033 Score=48.90 Aligned_cols=151 Identities=9% Similarity=0.046 Sum_probs=85.9
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCCeEEEeec-CCcccEEEEEEeeCCCEEEE-ecCCCeEEEEEcCCcccc---ce
Q 028802 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVC-GSQSGTVLLYSWGYFKDC---SD 74 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~-~~~d~~i~v~d~~~~~~~---~~ 74 (203)
++++| ++.++++-...+.|+.++..++....... ........|+|+|++++|++ -...+.|..++....... ..
T Consensus 231 iavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~ 310 (430)
T 3tc9_A 231 AETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPY 310 (430)
T ss_dssp EEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCE
T ss_pred EEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceE
Confidence 35788 66666666677899999988765422222 12245678999999995554 456788999887521111 11
Q ss_pred eeecCC---------------CCcee-EEE-e--------eCCCEEEEEcCCCcEEEEEccCCceeeeecc----CC---
Q 028802 75 RFVGLS---------------PNSVD-ALL-K--------LDEDRVITGSENGLISLVGILPNRIIQPIAE----HS--- 122 (203)
Q Consensus 75 ~~~~~~---------------~~~v~-~~~-~--------~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~----~~--- 122 (203)
.+.+ . -.... .++ . +++.++++-...+.|+.++ ..|......-. ..
T Consensus 311 ~~ag-~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v~~~~g~g~~~~~G~~ 388 (430)
T 3tc9_A 311 IVCG-QQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRVTTFAGRGSNGTSGYN 388 (430)
T ss_dssp EEEE-CTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEEEEEEECCTTSSSSCB
T ss_pred EEec-cCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcEEEEEeCCCCCCCccc
Confidence 2221 1 00112 232 2 2345555545567788887 34543322211 00
Q ss_pred C---------cceEEEEEeCC-CCeEEEEeCCCcEEEEeCC
Q 028802 123 E---------YPIESLALSHD-RKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 123 ~---------~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~ 153 (203)
. .....++++|+ +..+++-.....|+.++++
T Consensus 389 dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 389 DGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp CEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 0 14788999995 5555555567788888753
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0063 Score=45.16 Aligned_cols=151 Identities=12% Similarity=-0.081 Sum_probs=89.1
Q ss_pred cccccCCEE-EEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCC--CeEEEEEcCCccccceeeec
Q 028802 2 TFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS--GTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d--~~i~v~d~~~~~~~~~~~~~ 78 (203)
++++.+..| ++-...+.|.++++........+.........+++.|.+..|+.+... +.|..+++. +.....+..
T Consensus 83 avd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d--G~~~~~~~~ 160 (316)
T 1ijq_A 83 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GVDIYSLVT 160 (316)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCCEEEEEC
T ss_pred EEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC--CCCeEEEEE
Confidence 455544444 343556788888876543333333333567899999876666555442 678888875 333333322
Q ss_pred CCCCceeEE-EeeCCCEEEEEc-CCCcEEEEEccCCceeeee-ccC-CCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 79 LSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRIIQPI-AEH-SEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~-~dg~v~v~d~~~~~~~~~~-~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
..-.....+ ++|++..|+.+. ..+.|..+++... ....+ ... .......+++. .+..+++....+.|..++..+
T Consensus 161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~ 238 (316)
T 1ijq_A 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLT 238 (316)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-ceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCC
Confidence 023445667 888877777665 4578999998643 22222 211 11245677775 344555555678899998765
Q ss_pred cc
Q 028802 155 IL 156 (203)
Q Consensus 155 ~~ 156 (203)
+.
T Consensus 239 g~ 240 (316)
T 1ijq_A 239 GS 240 (316)
T ss_dssp CC
T ss_pred Cc
Confidence 54
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0088 Score=46.00 Aligned_cols=152 Identities=11% Similarity=-0.089 Sum_probs=88.0
Q ss_pred cccccCCEE-EEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC--CCeEEEEEcCCccccceeeec
Q 028802 2 TFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ--SGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~ 78 (203)
++.+.+..| ++-...+.|.+.++........+...-.....|++.|.+..|+.+.. .+.|...++. +.....+..
T Consensus 165 avD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d--G~~~~~~~~ 242 (400)
T 3p5b_L 165 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GVDIYSLVT 242 (400)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT--SCSCEEEEC
T ss_pred EEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC--CCccEEEEE
Confidence 444433333 33345567777777655433333333445789999997666665543 3678888875 333333322
Q ss_pred CCCCceeEE-EeeCCCEEEEEc-CCCcEEEEEccCCceeeeeccCC-CcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 79 LSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRIIQPIAEHS-EYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~-~dg~v~v~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
..-.....| ++|++..|+.+. ..+.|..+++........+.... ......+++. .+..+++-...+.|..++..++
T Consensus 243 ~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 243 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSC
T ss_pred CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCC
Confidence 033456777 898877777765 46789999986433322222211 1135567763 3344455556788988886555
Q ss_pred c
Q 028802 156 L 156 (203)
Q Consensus 156 ~ 156 (203)
.
T Consensus 322 ~ 322 (400)
T 3p5b_L 322 S 322 (400)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00018 Score=59.48 Aligned_cols=151 Identities=9% Similarity=-0.058 Sum_probs=85.1
Q ss_pred CcccccCCEEEEEc-CCCeEEEEEcCC----CeEEEeecCCcccEEEEEEeeCCCE-EEEecCCCeEEEEEcCCccccce
Q 028802 1 MTFAADAMKLLGTS-GDGTLSVCNLRK----NTVQTRSEFSEEELTSVVLMKNGRK-VVCGSQSGTVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~-~d~~i~v~d~~~----~~~~~~~~~~~~~i~~l~~~~~~~~-l~~~~~d~~i~v~d~~~~~~~~~ 74 (203)
|+|++.+..|+.+. ..+.|+.+++.+ ......+.........|++.+.+.. +++-...+.|.++++.. ....
T Consensus 411 la~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg--~~~~ 488 (699)
T 1n7d_A 411 LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG--VKRK 488 (699)
T ss_dssp CEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSS--CCEE
T ss_pred EccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCC--CceE
Confidence 46777666666553 457888888765 2222222222223456788754444 44444567899998753 3333
Q ss_pred eeecCCCCceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEE-eCCCcEEEE
Q 028802 75 RFVGLSPNSVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSI-SHDSMLKLW 150 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~--dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~iw 150 (203)
.+..........+ ++|.+.+|+.+.. .+.|.++++.. .....+..........|+|+|++..|+.+ ...+.|.++
T Consensus 489 ~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG-~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~ 567 (699)
T 1n7d_A 489 TLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSI 567 (699)
T ss_dssp EECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS-CCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEE
T ss_pred EEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC-CCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEE
Confidence 3322022344566 7886666655543 26788877653 22222211111245679999987665544 466789999
Q ss_pred eCCC
Q 028802 151 DLDD 154 (203)
Q Consensus 151 d~~~ 154 (203)
++..
T Consensus 568 d~dG 571 (699)
T 1n7d_A 568 DVNG 571 (699)
T ss_dssp CSSS
T ss_pred ccCC
Confidence 9865
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0083 Score=45.19 Aligned_cols=135 Identities=16% Similarity=0.212 Sum_probs=87.7
Q ss_pred CCeEEEEEcC--CCeEEEeecC------Cc-ccEEEEEE--eeC-CC-EEEEecCCCeEEEEEcCC------ccccceee
Q 028802 16 DGTLSVCNLR--KNTVQTRSEF------SE-EELTSVVL--MKN-GR-KVVCGSQSGTVLLYSWGY------FKDCSDRF 76 (203)
Q Consensus 16 d~~i~v~d~~--~~~~~~~~~~------~~-~~i~~l~~--~~~-~~-~l~~~~~d~~i~v~d~~~------~~~~~~~~ 76 (203)
+++|.+|++. ++. +..+.. .. ..+..+++ +|. +. ++++...+|.+..|++.. ..+.++.|
T Consensus 98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f 176 (355)
T 3amr_A 98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF 176 (355)
T ss_dssp CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence 5889999773 333 344421 11 44566777 664 43 677888899999998842 12445666
Q ss_pred ecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEcc-----CCceeeeec-cCCCcceEEEEE--eCCCC-eEEEEe-CCC
Q 028802 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL-----PNRIIQPIA-EHSEYPIESLAL--SHDRK-FLGSIS-HDS 145 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~-----~~~~~~~~~-~~~~~~i~~~~~--~~~~~-~l~~~~-~d~ 145 (203)
.. . ..+..+ +.+....|+.+-++.-|..|+.+ +++.+..+. .+....+..|++ .++++ +|++++ .+.
T Consensus 177 ~l-g-sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~ 254 (355)
T 3amr_A 177 KM-N-SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNS 254 (355)
T ss_dssp EC-S-SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGT
T ss_pred cC-C-CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCC
Confidence 65 3 344445 88888999999998778888855 234554442 221235888888 45666 676666 678
Q ss_pred cEEEEeCC
Q 028802 146 MLKLWDLD 153 (203)
Q Consensus 146 ~i~iwd~~ 153 (203)
.+.+||..
T Consensus 255 s~~Vydr~ 262 (355)
T 3amr_A 255 SYAIYDRQ 262 (355)
T ss_dssp EEEEEESS
T ss_pred EEEEEECC
Confidence 99999996
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.023 Score=47.72 Aligned_cols=152 Identities=11% Similarity=-0.108 Sum_probs=88.6
Q ss_pred CcccccCCEEEE-EcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC--CCeEEEEEcCCccccceeee
Q 028802 1 MTFAADAMKLLG-TSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ--SGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~-~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~ 77 (203)
|++.+.++.|+. -...+.|.+.++........+.........|++.|.+..|+.+.. .+.|.+.++. +.....+.
T Consensus 476 LAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d--G~~~~~lv 553 (791)
T 3m0c_C 476 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GVDIYSLV 553 (791)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCCEEEEE
T ss_pred eeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC--CCceEEEE
Confidence 355655654444 345678888888755443333333455789999997666666553 3678888875 33333333
Q ss_pred cCCCCceeEE-EeeCCCEEEEEc-CCCcEEEEEccCCceeeeeccCC-CcceEEEEEeCCCCeEE-EEeCCCcEEEEeCC
Q 028802 78 GLSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRIIQPIAEHS-EYPIESLALSHDRKFLG-SISHDSMLKLWDLD 153 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~-~dg~v~v~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~-~~~~d~~i~iwd~~ 153 (203)
.........| +++.+..|+.+. ..+.|..+++........+.... -.....|++. +.+|+ +-...+.|...+..
T Consensus 554 ~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~ 631 (791)
T 3m0c_C 554 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRL 631 (791)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETT
T ss_pred eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCC
Confidence 2033456777 787777777665 45679999886433333332211 1134566663 33444 44466778888765
Q ss_pred Ccc
Q 028802 154 DIL 156 (203)
Q Consensus 154 ~~~ 156 (203)
++.
T Consensus 632 tG~ 634 (791)
T 3m0c_C 632 TGS 634 (791)
T ss_dssp TCC
T ss_pred CCc
Confidence 553
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.018 Score=44.47 Aligned_cols=134 Identities=13% Similarity=0.152 Sum_probs=83.8
Q ss_pred CCeEEEEEcCCCeEEEeecCC----cccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcc---c--------cceeeec--
Q 028802 16 DGTLSVCNLRKNTVQTRSEFS----EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK---D--------CSDRFVG-- 78 (203)
Q Consensus 16 d~~i~v~d~~~~~~~~~~~~~----~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~---~--------~~~~~~~-- 78 (203)
++.||..++......+.+... -..|..+..+|+|.+|+..+. ..|.|..+.... . ....+.-
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~ 118 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE 118 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCC
Confidence 366777776633222333322 235778999999999998864 578888876211 0 0111211
Q ss_pred ---CCCCceeEE-EeeC---CCEEEEEcCCCcEEEEEccCC--ceeeeeccCC--------CcceEEEEEeCCCCeEEEE
Q 028802 79 ---LSPNSVDAL-LKLD---EDRVITGSENGLISLVGILPN--RIIQPIAEHS--------EYPIESLALSHDRKFLGSI 141 (203)
Q Consensus 79 ---~~~~~v~~~-~~~~---~~~l~~~~~dg~v~v~d~~~~--~~~~~~~~~~--------~~~i~~~~~~~~~~~l~~~ 141 (203)
....+|..+ |+|- +..|++-..|+.|++||+... ++. .+.... ...|.+++|.+++-.|+..
T Consensus 119 ~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl 197 (452)
T 3pbp_A 119 EEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCL 197 (452)
T ss_dssp CC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEE
T ss_pred cccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEE
Confidence 013457777 9884 568999999999999999752 222 222110 1268899999988777775
Q ss_pred e--CCCcEEEEe
Q 028802 142 S--HDSMLKLWD 151 (203)
Q Consensus 142 ~--~d~~i~iwd 151 (203)
+ ..|.|+-.-
T Consensus 198 ~~t~~GDIYAlc 209 (452)
T 3pbp_A 198 NTTEGGDIFAFY 209 (452)
T ss_dssp ECTTSCEEEEES
T ss_pred ecCCCCCEEEEC
Confidence 5 677776554
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.017 Score=43.76 Aligned_cols=148 Identities=10% Similarity=0.088 Sum_probs=85.6
Q ss_pred cccccCCEEEEEc------------CCCeEEEEEcCC--CeE-EEeecC-----CcccEEEEEEee--CCC-EEEEe-cC
Q 028802 2 TFAADAMKLLGTS------------GDGTLSVCNLRK--NTV-QTRSEF-----SEEELTSVVLMK--NGR-KVVCG-SQ 57 (203)
Q Consensus 2 ~~sp~~~~l~~~~------------~d~~i~v~d~~~--~~~-~~~~~~-----~~~~i~~l~~~~--~~~-~l~~~-~~ 57 (203)
+..|+|..+++++ .+|.|.++|..+ ++. ...+.+ .......+.+.+ ++. +|+++ ..
T Consensus 56 ~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~ 135 (355)
T 3sre_A 56 EILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHP 135 (355)
T ss_dssp EECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECS
T ss_pred EEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECC
Confidence 4567765555541 689999999873 222 112222 234677888776 454 34443 32
Q ss_pred --CCeEEEEEcCCccccce---eeecCCCCceeEE-EeeCCCEEEEEcC-----------------CCcEEEEEccCCce
Q 028802 58 --SGTVLLYSWGYFKDCSD---RFVGLSPNSVDAL-LKLDEDRVITGSE-----------------NGLISLVGILPNRI 114 (203)
Q Consensus 58 --d~~i~v~d~~~~~~~~~---~~~~~~~~~v~~~-~~~~~~~l~~~~~-----------------dg~v~v~d~~~~~~ 114 (203)
..++.+|++...+.... .+.+..-.....+ +.++|.+.++... .|.|+.++. ++.
T Consensus 136 ~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~ 213 (355)
T 3sre_A 136 GSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV 213 (355)
T ss_dssp TTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCC
T ss_pred CCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeE
Confidence 56788888864333222 2322112345666 7888887666431 244555554 333
Q ss_pred eeeeccCCCcceEEEEEeCCCCeEEEEe-CCCcEEEEeCC
Q 028802 115 IQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLD 153 (203)
Q Consensus 115 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~ 153 (203)
......- . ....++|+||+++|+.+. ..+.|..|++.
T Consensus 214 ~~~~~~l-~-~pNGia~spDg~~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 214 RVVAEGF-D-FANGINISPDGKYVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp EEEEEEE-S-SEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred EEeecCC-c-ccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence 2222222 2 468899999998877665 57889999986
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0026 Score=48.09 Aligned_cols=137 Identities=15% Similarity=0.067 Sum_probs=74.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeE--EEeec---CCcccEEEEEEeeC---CCEEEEecC-C-----CeEEEEEc
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV--QTRSE---FSEEELTSVVLMKN---GRKVVCGSQ-S-----GTVLLYSW 66 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~--~~~~~---~~~~~i~~l~~~~~---~~~l~~~~~-d-----~~i~v~d~ 66 (203)
|+|.|+|+++++ ...+.|++++ .+.. +..+. ........|+++|+ +..|+++.. . +.|..|+.
T Consensus 36 ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~ 112 (352)
T 2ism_A 36 LAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRH 112 (352)
T ss_dssp EEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEE
T ss_pred EEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEe
Confidence 578999985555 5569999998 4432 22221 22456889999998 555554443 2 57888877
Q ss_pred CCcc-----ccceeee--cCCCCceeEE-EeeCCCEEEEEcC-------------CCcEEEEEccCC------------c
Q 028802 67 GYFK-----DCSDRFV--GLSPNSVDAL-LKLDEDRVITGSE-------------NGLISLVGILPN------------R 113 (203)
Q Consensus 67 ~~~~-----~~~~~~~--~~~~~~v~~~-~~~~~~~l~~~~~-------------dg~v~v~d~~~~------------~ 113 (203)
.... ..+..+. .........+ |.|+|.+.++.+. .|.|..++.... .
T Consensus 113 ~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~ 192 (352)
T 2ism_A 113 LGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGA 192 (352)
T ss_dssp CSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTS
T ss_pred CCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCC
Confidence 5210 1111122 1011223566 8999976665432 245666665420 0
Q ss_pred eeeee-ccCCCcceEEEEEeC-CCCeEEEEe
Q 028802 114 IIQPI-AEHSEYPIESLALSH-DRKFLGSIS 142 (203)
Q Consensus 114 ~~~~~-~~~~~~~i~~~~~~~-~~~~l~~~~ 142 (203)
....+ .++ . ....++|+| ++..+++-.
T Consensus 193 ~~~i~a~G~-r-np~g~a~d~~~g~l~v~d~ 221 (352)
T 2ism_A 193 RPEVYSLGH-R-NPQGLAWHPKTGELFSSEH 221 (352)
T ss_dssp CTTEEEECC-S-EECCCEECTTTCCEEEEEE
T ss_pred CccEEEEcC-C-CcccEEEECCCCCEEEEEc
Confidence 11111 122 2 366789999 566555443
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.03 Score=45.70 Aligned_cols=152 Identities=11% Similarity=0.001 Sum_probs=89.5
Q ss_pred CcccccCCEEEEE-cCCCeEEEEEcCCCeE-EEeecCCcccEEEEEEeeCCCEEE-EecCCCeEEEEEcCCccccceeee
Q 028802 1 MTFAADAMKLLGT-SGDGTLSVCNLRKNTV-QTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~~-~~d~~i~v~d~~~~~~-~~~~~~~~~~i~~l~~~~~~~~l~-~~~~d~~i~v~d~~~~~~~~~~~~ 77 (203)
|+|++.+..|+.+ ...+.|..+++..... ...+...-.....|++.+.+..|+ +-...+.|.+.++.. .....+.
T Consensus 45 ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG--~~~~~l~ 122 (619)
T 3s94_A 45 VDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDG--SLRKVLF 122 (619)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEE
T ss_pred EEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCC--CCEEEEE
Confidence 3566655555544 3356777777765422 222333335678999998655554 445678999999863 3333333
Q ss_pred -cCCCCceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe-CCCcEEEEeC
Q 028802 78 -GLSPNSVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDL 152 (203)
Q Consensus 78 -~~~~~~v~~~-~~~~~~~l~~~~~--dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~ 152 (203)
. .-.....+ +.|.+..|+.... .+.|...++. |.....+..........+++++++..|+.+. ..+.|..+++
T Consensus 123 ~~-~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~ 200 (619)
T 3s94_A 123 WQ-ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNL 200 (619)
T ss_dssp CS-SCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESS
T ss_pred eC-CCCCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecC
Confidence 3 34456667 7887666666553 3567666665 3333333221122578999999776666554 5678999998
Q ss_pred CCcc
Q 028802 153 DDIL 156 (203)
Q Consensus 153 ~~~~ 156 (203)
....
T Consensus 201 dG~~ 204 (619)
T 3s94_A 201 DGTN 204 (619)
T ss_dssp SCCE
T ss_pred CCCc
Confidence 7643
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0036 Score=51.31 Aligned_cols=66 Identities=14% Similarity=0.130 Sum_probs=42.8
Q ss_pred ccccCCEEEEEcC-CCeEEEEEcCCCeEEEeecCCcc-cEEEEEEeeCCCEEEEec-CC-----CeEEEEEcCC
Q 028802 3 FAADAMKLLGTSG-DGTLSVCNLRKNTVQTRSEFSEE-ELTSVVLMKNGRKVVCGS-QS-----GTVLLYSWGY 68 (203)
Q Consensus 3 ~sp~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~-~i~~l~~~~~~~~l~~~~-~d-----~~i~v~d~~~ 68 (203)
+.++++++++|+. +..+.+||..++.-...-.-+.. .-.+++..++++.++.|+ .+ ..+.+||..+
T Consensus 250 ~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 250 MDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp ECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred CCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence 4578888888874 46899999887643322111111 123455567899999888 33 5688999853
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.011 Score=44.10 Aligned_cols=148 Identities=8% Similarity=0.038 Sum_probs=90.7
Q ss_pred cccCCEEEEEc-------------CCCeEEEEEcC---CCeEEEeecC-------------CcccEEEEEEeeCCCEEEE
Q 028802 4 AADAMKLLGTS-------------GDGTLSVCNLR---KNTVQTRSEF-------------SEEELTSVVLMKNGRKVVC 54 (203)
Q Consensus 4 sp~~~~l~~~~-------------~d~~i~v~d~~---~~~~~~~~~~-------------~~~~i~~l~~~~~~~~l~~ 54 (203)
.|+++++++.. .+..|..||+. +++.+....- .......++..++|+..++
T Consensus 74 D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt 153 (334)
T 2p9w_A 74 DNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVA 153 (334)
T ss_dssp SSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEE
T ss_pred CCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEe
Confidence 57776666543 25779999998 7766544431 1135789999999999998
Q ss_pred ecCC-CeEEEEEcCCccccceeeecC-----CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCce--eeeec--cC--
Q 028802 55 GSQS-GTVLLYSWGYFKDCSDRFVGL-----SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI--IQPIA--EH-- 121 (203)
Q Consensus 55 ~~~d-~~i~v~d~~~~~~~~~~~~~~-----~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~--~~~~~--~~-- 121 (203)
++.. +.|..++.. +..+..+... .......+ ++|++..|++....|.|..+|+..... +. .. +.
T Consensus 154 ~s~~~~~I~rV~pd--G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~ 230 (334)
T 2p9w_A 154 FALGMPAIARVSAD--GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFG 230 (334)
T ss_dssp EEESSCEEEEECTT--SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE-CEESSCCC
T ss_pred CCCCCCeEEEEeCC--CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec-ccccCCcc
Confidence 8887 877776654 3333332210 11225567 899999999887799999999874322 11 11 21
Q ss_pred CCcceEEE-EEeCCCCe-EEEEeCCCcEEEEeCCC
Q 028802 122 SEYPIESL-ALSHDRKF-LGSISHDSMLKLWDLDD 154 (203)
Q Consensus 122 ~~~~i~~~-~~~~~~~~-l~~~~~d~~i~iwd~~~ 154 (203)
.......| ....+|+. |++....+.+.+.+.+.
T Consensus 231 ~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 231 TLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp CCTTEEEEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred cccCcccccccccCCEEEEEEcCCCCEEEEECCCC
Confidence 01123343 33347777 45555666666665433
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0098 Score=44.86 Aligned_cols=139 Identities=11% Similarity=0.047 Sum_probs=76.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeE--EEee----cCCcccEEEEEEeeC---CCEEEEe---cCCCeEEEEEcCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV--QTRS----EFSEEELTSVVLMKN---GRKVVCG---SQSGTVLLYSWGY 68 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~--~~~~----~~~~~~i~~l~~~~~---~~~l~~~---~~d~~i~v~d~~~ 68 (203)
|+|.|+|.++++-...|.|++++..++.. +..+ .........|+++|+ +..|++. ..++.|.-|.+..
T Consensus 37 ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~ 116 (347)
T 3das_A 37 LAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDE 116 (347)
T ss_dssp EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCT
T ss_pred EEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCC
Confidence 57899998777765589999998665543 2222 123466899999985 3444432 2345666666542
Q ss_pred cc-------ccc---eeeecCCCCceeEE-EeeCCCEEEEEcC-------------CCcEEEEEccCC----c---eeee
Q 028802 69 FK-------DCS---DRFVGLSPNSVDAL-LKLDEDRVITGSE-------------NGLISLVGILPN----R---IIQP 117 (203)
Q Consensus 69 ~~-------~~~---~~~~~~~~~~v~~~-~~~~~~~l~~~~~-------------dg~v~v~d~~~~----~---~~~~ 117 (203)
.. ... ..+..........| |.|+|.+.++.+. .|.|.-++.... . ....
T Consensus 117 ~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i 196 (347)
T 3das_A 117 KKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPV 196 (347)
T ss_dssp TSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCE
T ss_pred CCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeE
Confidence 10 111 11111012233456 8999987776432 355555554321 0 0111
Q ss_pred e-ccCCCcceEEEEEeCCCCeEEEE
Q 028802 118 I-AEHSEYPIESLALSHDRKFLGSI 141 (203)
Q Consensus 118 ~-~~~~~~~i~~~~~~~~~~~l~~~ 141 (203)
+ .++ . ....++|+|+|..+++-
T Consensus 197 ~a~G~-R-Np~Gla~dp~G~L~~~d 219 (347)
T 3das_A 197 YSYGH-R-NVQGLAWDDKQRLFASE 219 (347)
T ss_dssp EEBCC-S-BCCEEEECTTCCEEEEE
T ss_pred EeeCC-C-CcceEEECCCCCEEEEe
Confidence 2 233 2 46789999987765543
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.019 Score=42.41 Aligned_cols=139 Identities=6% Similarity=-0.045 Sum_probs=82.6
Q ss_pred ccccCCEEEEEcCC--------------CeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEec--CCCeEEEEEc
Q 028802 3 FAADAMKLLGTSGD--------------GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS--QSGTVLLYSW 66 (203)
Q Consensus 3 ~sp~~~~l~~~~~d--------------~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~--~d~~i~v~d~ 66 (203)
+++++..|+.+... ..|+..++..++... +.... ...|++++..|+... .++.-.||-+
T Consensus 60 i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~ 134 (302)
T 3s25_A 60 INADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPDP----CIYASLIGNYIYYLHYDTQTATSLYRI 134 (302)
T ss_dssp EEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECSC----EEEEEEETTEEEEEEESSSSCEEEEEE
T ss_pred EEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecCC----ccEEEEeCCEEEEEeecCCCCceEEEE
Confidence 56788888776542 467777777654322 22111 236788899888775 3444444444
Q ss_pred CCccccceeeecCCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCC
Q 028802 67 GYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 144 (203)
...+...+.+.. +.. . ++|+++.|+..+. ...|.+.++..+.....+. . ... ..+.|++.+|+.....
T Consensus 135 ~~dGs~~~~lt~-~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~-~---~~~-~~~~P~g~~iy~t~~~ 204 (302)
T 3s25_A 135 RIDGEEKKKIKN-HYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD-C---NCY-KPVVLDDTNVYYMDVN 204 (302)
T ss_dssp ETTSCCCEEEES-SCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC-S---CEE-EEEEEETTEEEEEEGG
T ss_pred ECCCCCeEEEeC-CCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC-C---Ccc-ceeeecCCEEEEEEcC
Confidence 333445555654 332 3 6888988887765 5678888877654433332 2 222 3466989888766533
Q ss_pred --CcEEEEeCCCcc
Q 028802 145 --SMLKLWDLDDIL 156 (203)
Q Consensus 145 --~~i~iwd~~~~~ 156 (203)
..|..-++.+..
T Consensus 205 ~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 205 RDNAIVHVNINNPN 218 (302)
T ss_dssp GTTEEEEECSSSCC
T ss_pred CCcEEEEEECCCCC
Confidence 356666665543
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0047 Score=43.40 Aligned_cols=147 Identities=7% Similarity=-0.107 Sum_probs=80.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeE------EEee-cCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc-
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV------QTRS-EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC- 72 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~------~~~~-~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~- 72 (203)
|+|+|+|.+.++ .+|.|+-.+..+... ...+ ...-.....+.|.|+|.+.++ .||.|+-++-.+....
T Consensus 46 laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~ 121 (236)
T 1tl2_A 46 LFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDN 121 (236)
T ss_dssp EEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCC
T ss_pred EEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCc
Confidence 578998886666 668877777654211 1111 111122467889999988877 5698887775332111
Q ss_pred c---eeeec-CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc-----eeeeeccCCCc-ceEEEEEeCCCCeEEEE
Q 028802 73 S---DRFVG-LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR-----IIQPIAEHSEY-PIESLALSHDRKFLGSI 141 (203)
Q Consensus 73 ~---~~~~~-~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~-----~~~~~~~~~~~-~i~~~~~~~~~~~l~~~ 141 (203)
+ ....+ ..-..+..| +.|+|.+.+.. ++.++-....++. ...+..++... .-..+.|.+++...++.
T Consensus 122 Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~ 199 (236)
T 1tl2_A 122 WIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ 199 (236)
T ss_dssp HHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE
T ss_pred eeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe
Confidence 1 01111 012456777 79999887776 7775433222111 01111121121 34456789999877666
Q ss_pred eCCCcEEEEeCCCccc
Q 028802 142 SHDSMLKLWDLDDILK 157 (203)
Q Consensus 142 ~~d~~i~iwd~~~~~~ 157 (203)
++ ++|......+
T Consensus 200 --~g--~~Y~~~~p~~ 211 (236)
T 1tl2_A 200 --GG--KFYEDYPPSY 211 (236)
T ss_dssp --TT--EEEEESCCCS
T ss_pred --CC--eEEecCCccc
Confidence 66 4555444433
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.035 Score=46.46 Aligned_cols=144 Identities=13% Similarity=0.093 Sum_probs=87.8
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecC--------CcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEF--------SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--------~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 77 (203)
+|+ |..|+.++-|..|+..++........ ....|.++...++++.|.+|+.++-|.+|+..+. . ...+.
T Consensus 367 ~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~-~-~~~~~ 443 (795)
T 4a2l_A 367 DKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSG-Q-VENFN 443 (795)
T ss_dssp TSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTC-C-EEEEC
T ss_pred CCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCC-c-EEEee
Confidence 444 44566666788888877654332211 2356889988888885677777677999997642 2 22222
Q ss_pred c----CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeecc-----CCCcceEEEEEeCCCCeEEEEeCCCcE
Q 028802 78 G----LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAE-----HSEYPIESLALSHDRKFLGSISHDSML 147 (203)
Q Consensus 78 ~----~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~d~~i 147 (203)
. .....|.++ ..++|.+.+. +.. -|.+|+..+++....... .....|.++...++|+..+.. . +-|
T Consensus 444 ~~~~~l~~~~v~~i~~d~~g~lwig-t~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl 519 (795)
T 4a2l_A 444 QRNSQLVNENVYAILPDGEGNLWLG-TLS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGL 519 (795)
T ss_dssp TTTSCCSCSCEEEEEECSSSCEEEE-ESS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCE
T ss_pred cCCCCcCCCeeEEEEECCCCCEEEE-ecC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe-C-Cce
Confidence 1 023467777 5667765554 444 488899877654322211 112368899888888765544 3 458
Q ss_pred EEEeCCCcc
Q 028802 148 KLWDLDDIL 156 (203)
Q Consensus 148 ~iwd~~~~~ 156 (203)
..|+..+..
T Consensus 520 ~~~~~~~~~ 528 (795)
T 4a2l_A 520 SVFKQEGLD 528 (795)
T ss_dssp EEEEEETTE
T ss_pred EEEeCCCCe
Confidence 888876543
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0079 Score=45.49 Aligned_cols=136 Identities=13% Similarity=0.043 Sum_probs=73.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe-EEEeec---CCcccEEEEEEeeC---CCEEEEecC----C----CeEEEEE
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT-VQTRSE---FSEEELTSVVLMKN---GRKVVCGSQ----S----GTVLLYS 65 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~---~~~~~i~~l~~~~~---~~~l~~~~~----d----~~i~v~d 65 (203)
|+|.|+|+++++ ...+.|++++ ..+. .+..+. ........|+++|+ +..|+++.. + ..|..|+
T Consensus 34 ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~ 111 (354)
T 3a9g_A 34 IAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGR 111 (354)
T ss_dssp EEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEE
T ss_pred EEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEE
Confidence 578999975554 5569999997 3444 222221 22356889999997 455554433 2 5677777
Q ss_pred cCCcc------c-cceeeecCCCCceeEE-EeeCCCEEEEEcC-------------CCcEEEEEccCC---------cee
Q 028802 66 WGYFK------D-CSDRFVGLSPNSVDAL-LKLDEDRVITGSE-------------NGLISLVGILPN---------RII 115 (203)
Q Consensus 66 ~~~~~------~-~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-------------dg~v~v~d~~~~---------~~~ 115 (203)
..... + .+..+..........+ |.|+|.+.++.+. .|.|..++.... ..+
T Consensus 112 ~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i 191 (354)
T 3a9g_A 112 LDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPI 191 (354)
T ss_dssp ECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCE
T ss_pred ECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcE
Confidence 65321 1 1111221011233456 8999986666432 245666654321 011
Q ss_pred eeeccCCCcceEEEEEeC-CCCeEEEE
Q 028802 116 QPIAEHSEYPIESLALSH-DRKFLGSI 141 (203)
Q Consensus 116 ~~~~~~~~~~i~~~~~~~-~~~~l~~~ 141 (203)
. -.++ . ....++|+| +++.+++-
T Consensus 192 ~-a~G~-r-np~Gla~d~~~g~l~v~d 215 (354)
T 3a9g_A 192 W-SYGH-R-NPQGIDWHRASGVMVATE 215 (354)
T ss_dssp E-EECC-S-CCCEEEECTTTCCEEEEE
T ss_pred E-EEcc-C-CcceEEEeCCCCCEEEEe
Confidence 1 1223 2 356899999 66655543
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.041 Score=44.93 Aligned_cols=150 Identities=11% Similarity=0.066 Sum_probs=91.9
Q ss_pred CcccccCCEEEEE-cCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEE-EecCCCeEEEEEcCCccccceeee-
Q 028802 1 MTFAADAMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFV- 77 (203)
Q Consensus 1 l~~sp~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~-~~~~d~~i~v~d~~~~~~~~~~~~- 77 (203)
|+|++....|+.+ ..++.|+.+++........+.........|++.+.+..|+ +-...+.|.+.++.. .....+.
T Consensus 42 l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG--~~~~~l~~ 119 (628)
T 4a0p_A 42 LDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDG--QHRQVLVW 119 (628)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS--TTCEEEEC
T ss_pred EEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCC--CcEEEEEe
Confidence 3567665555443 4567788888765433333333234466888887655554 444578899999863 3333332
Q ss_pred cCCCCceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe-CCCcEEEEeCC
Q 028802 78 GLSPNSVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLD 153 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~--dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~ 153 (203)
. .-.....+ +.|....|+.... .+.|...++.... ...+... ......+++++++..|+.+. ..+.|..+++.
T Consensus 120 ~-~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~~~-~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~d 196 (628)
T 4a0p_A 120 K-DLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTLVPN-VGRANGLTIDYAKRRLYWTDLDTNLIESSNML 196 (628)
T ss_dssp S-SCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred C-CCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEEECC-CCCcceEEEccccCEEEEEECCCCEEEEEcCC
Confidence 3 34456777 7886666666553 4677777765433 2222222 22678999999877776555 56789999886
Q ss_pred Cc
Q 028802 154 DI 155 (203)
Q Consensus 154 ~~ 155 (203)
..
T Consensus 197 G~ 198 (628)
T 4a0p_A 197 GL 198 (628)
T ss_dssp SC
T ss_pred CC
Confidence 54
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0012 Score=54.61 Aligned_cols=153 Identities=12% Similarity=-0.088 Sum_probs=84.1
Q ss_pred cccccCCEEE-EEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC--CCeEEEEEcCCccccceeeec
Q 028802 2 TFAADAMKLL-GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ--SGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp~~~~l~-~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~ 78 (203)
++.+.+..|+ +-...+.|.++++........+.........|++.|.+.+|+.+.. .+.|.++++.. .....+..
T Consensus 459 avD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG--~~~~~l~~ 536 (699)
T 1n7d_A 459 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG--VDIYSLVT 536 (699)
T ss_dssp ECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS--CCCCEESC
T ss_pred EEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC--CCeeEEEe
Confidence 4454444343 3345678888887765443333333344677889986665555443 26787777642 22222221
Q ss_pred CCCCceeEE-EeeCCCEEEEEc-CCCcEEEEEccCCceeeeeccCC-CcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 79 LSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRIIQPIAEHS-EYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~-~dg~v~v~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
........| ++|++..|+.+. ..+.|.++++........+.... ......|++..+ ..+++....+.|..++..++
T Consensus 537 ~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 537 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTE
T ss_pred CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCC
Confidence 022334566 888766655554 56789999986432222222110 112345566544 34445556788999987665
Q ss_pred cc
Q 028802 156 LK 157 (203)
Q Consensus 156 ~~ 157 (203)
..
T Consensus 616 ~~ 617 (699)
T 1n7d_A 616 SD 617 (699)
T ss_dssp EE
T ss_pred Cc
Confidence 43
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.045 Score=45.80 Aligned_cols=141 Identities=11% Similarity=0.046 Sum_probs=85.6
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeec----CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec--
Q 028802 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSE----FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-- 78 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-- 78 (203)
++++.|.+|+.++-|.+|+..+++...... .....|.++...+++.+.+.. .. -+.+|+..+. ....+..
T Consensus 415 ~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~--~~~~~~~~~ 490 (795)
T 4a2l_A 415 EKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQR--SFTTIEKEK 490 (795)
T ss_dssp TTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTT--EEEECCBCT
T ss_pred CCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCC--eEEEccccc
Confidence 455546666776779999988775533221 124568888888888765554 44 4888887532 2222221
Q ss_pred ----CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeecc------CCCcceEEEEEeCCCCeEEEEeCCCcE
Q 028802 79 ----LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAE------HSEYPIESLALSHDRKFLGSISHDSML 147 (203)
Q Consensus 79 ----~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~d~~i 147 (203)
.....+.++ ..++|.+.+.. . +-|..|+..++.. .+.. .....|.++...++|+..+.. .. -|
T Consensus 491 ~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl 564 (795)
T 4a2l_A 491 DGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGT-RE-GF 564 (795)
T ss_dssp TCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SS-CE
T ss_pred cccccCCceEEEEEECCCCCEEEEe-C-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CC-Cc
Confidence 023457777 57777765544 4 4588899877654 2221 111268889888888755543 33 57
Q ss_pred EEEeCCCc
Q 028802 148 KLWDLDDI 155 (203)
Q Consensus 148 ~iwd~~~~ 155 (203)
..||..+.
T Consensus 565 ~~~d~~~~ 572 (795)
T 4a2l_A 565 YCFNEKDK 572 (795)
T ss_dssp EEEETTTT
T ss_pred eeECCCCC
Confidence 88887654
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.016 Score=45.47 Aligned_cols=99 Identities=10% Similarity=0.077 Sum_probs=55.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeE--EEeecC------CcccEEEEEEeeC---CCEEEEecC------------
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV--QTRSEF------SEEELTSVVLMKN---GRKVVCGSQ------------ 57 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~--~~~~~~------~~~~i~~l~~~~~---~~~l~~~~~------------ 57 (203)
|+|.|+|+++++-...+.|++++..++.. +..+.. ....+..|+|+|+ +..|+++..
T Consensus 32 ~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~ 111 (454)
T 1cru_A 32 LLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELP 111 (454)
T ss_dssp EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSC
T ss_pred EEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCccccc
Confidence 57899998777655445788887654533 222321 2456789999995 555544432
Q ss_pred -CCeEEEEEcCCcc------c-cceeeecCCCCceeEE-EeeCCCEEEEEc
Q 028802 58 -SGTVLLYSWGYFK------D-CSDRFVGLSPNSVDAL-LKLDEDRVITGS 99 (203)
Q Consensus 58 -d~~i~v~d~~~~~------~-~~~~~~~~~~~~v~~~-~~~~~~~l~~~~ 99 (203)
...|..|++.... + .+..+..........| |.|+|.+.++.+
T Consensus 112 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 112 NQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred cccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 2356666653211 1 1111211012345667 899998777644
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.063 Score=43.86 Aligned_cols=150 Identities=10% Similarity=-0.011 Sum_probs=89.6
Q ss_pred cccccCCEEE-EEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC--CCeEEEEEcCCccccceeeec
Q 028802 2 TFAADAMKLL-GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ--SGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp~~~~l~-~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~ 78 (203)
++.+.+..|+ +-...+.|.+.++........+...-.....|++.|....|+.+.. .+.|...++. +.....+..
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d--G~~~~~l~~ 163 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMD--GSERTTLVP 163 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEEEEC
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCC--CCceEEEEC
Confidence 4454444443 3344677888887654322222233455789999986666665553 4677777765 333444433
Q ss_pred CCCCceeEE-EeeCCCEEEEEc-CCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 79 LSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~-~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
.......+ +++++..|+.+. ..+.|..+++..... ..+..... ....+++.. +..+++-...+.|...|..++.
T Consensus 164 -~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~-~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 164 -NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLP-HPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp -SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCS-CEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred -CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCC-CceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence 44556677 888777777665 467899999864332 23333222 456777765 3444454467889888876664
Q ss_pred c
Q 028802 157 K 157 (203)
Q Consensus 157 ~ 157 (203)
.
T Consensus 240 ~ 240 (628)
T 4a0p_A 240 N 240 (628)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.05 Score=40.48 Aligned_cols=144 Identities=8% Similarity=0.023 Sum_probs=78.5
Q ss_pred cccccCCEEEEEcCCCeEEEEEc--CCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNL--RKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~--~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
+++|++.+++++...+.++-.|- .+.+.+. ......+..+.+.+++..+++ +.+|.+++.... .+.....+...
T Consensus 169 ~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D-~G~tW~~~~~~ 244 (327)
T 2xbg_A 169 NRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPD-NSENWGELLSP 244 (327)
T ss_dssp EECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETT-EEEEECCCBCT
T ss_pred EEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEE-eCCceEEEecCC-CCCeeEeccCC
Confidence 45677777766654333333342 2223332 233456888999888876654 456777776422 13333333210
Q ss_pred ---CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccC--CCcceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028802 80 ---SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEH--SEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 80 ---~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
....+..+ +.+++.+++++. ++.| ++....|+.-..+... ....++++.|.++++ +++++.+|.|..++-
T Consensus 245 ~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 245 LRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp TSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred cccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 12346677 677776666554 6666 3444445443333321 012578888876554 566667888777653
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.04 Score=40.17 Aligned_cols=143 Identities=10% Similarity=0.027 Sum_probs=74.3
Q ss_pred cCCEEEEEcCC-----CeEEEEEcCCCeE--EEeecCCcccEEEEEEeeCCCEEEEecCC-----CeEEEEEcCCccccc
Q 028802 6 DAMKLLGTSGD-----GTLSVCNLRKNTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQS-----GTVLLYSWGYFKDCS 73 (203)
Q Consensus 6 ~~~~l~~~~~d-----~~i~v~d~~~~~~--~~~~~~~~~~i~~l~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~ 73 (203)
+++.++.|+.+ ..+.+||+.+..- +..+......-..+ .-++..++.|+.+ ..+.+||+.+ ..+
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~d~~~--~~W 187 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLV--VASGVIYCLGGYDGLNILNSVEKYDPHT--GHW 187 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEE--EETTEEEEECCBCSSCBCCCEEEEETTT--TEE
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEE--EECCEEEEECCCCCCcccceEEEEeCCC--CcE
Confidence 45555666543 4688899877643 22222222211122 2366777777654 4688888764 233
Q ss_pred eeeecCCCCc--eeEEEeeCCCEEEEEcCC-----CcEEEEEccCCceeeeeccCC-CcceEEEEEeCCCCeEEEEeCC-
Q 028802 74 DRFVGLSPNS--VDALLKLDEDRVITGSEN-----GLISLVGILPNRIIQPIAEHS-EYPIESLALSHDRKFLGSISHD- 144 (203)
Q Consensus 74 ~~~~~~~~~~--v~~~~~~~~~~l~~~~~d-----g~v~v~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d- 144 (203)
..+.. ...+ -.++...++.+++.|+.+ ..+.+||+.+.+-...-.... ......+. -+++.++.|+.+
T Consensus 188 ~~~~~-~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~ 264 (301)
T 2vpj_A 188 TNVTP-MATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRGRLYAIAGYDG 264 (301)
T ss_dssp EEECC-CSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCS
T ss_pred EeCCC-CCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECCEEEEEcCcCC
Confidence 33322 1111 112233466777777653 468999998765432211111 11122222 266677777754
Q ss_pred ----CcEEEEeCCCc
Q 028802 145 ----SMLKLWDLDDI 155 (203)
Q Consensus 145 ----~~i~iwd~~~~ 155 (203)
..+.+||+.+.
T Consensus 265 ~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 265 NSLLSSIECYDPIID 279 (301)
T ss_dssp SSBEEEEEEEETTTT
T ss_pred CcccccEEEEcCCCC
Confidence 35778887654
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0073 Score=46.66 Aligned_cols=105 Identities=10% Similarity=0.006 Sum_probs=70.2
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCe------------EEEeecC------CcccEEEEEEeeC---CCEEEEecCCCe
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNT------------VQTRSEF------SEEELTSVVLMKN---GRKVVCGSQSGT 60 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~------------~~~~~~~------~~~~i~~l~~~~~---~~~l~~~~~d~~ 60 (203)
..||+|.+||..+. .+|.|..+..+. ....+.- ...+|..+.|+|- +..|++-..|+.
T Consensus 72 vlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~ 150 (452)
T 3pbp_A 72 ISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDT 150 (452)
T ss_dssp EECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSC
T ss_pred EECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCE
Confidence 46899999998865 689999887321 0112211 2567999999994 568999999999
Q ss_pred EEEEEcCCcc-ccceeeec--------CCCCceeEE-EeeCCCEEEEEc--CCCcEEEEE
Q 028802 61 VLLYSWGYFK-DCSDRFVG--------LSPNSVDAL-LKLDEDRVITGS--ENGLISLVG 108 (203)
Q Consensus 61 i~v~d~~~~~-~~~~~~~~--------~~~~~v~~~-~~~~~~~l~~~~--~dg~v~v~d 108 (203)
|++||+.... .+. .+.. .....+.++ |..++-.|+..+ ..|.|+-..
T Consensus 151 Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 151 ITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp EEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred EEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence 9999997421 111 2211 012456677 877777777755 778887643
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.012 Score=48.14 Aligned_cols=114 Identities=11% Similarity=-0.004 Sum_probs=69.0
Q ss_pred EEEEee-CCCEEEEecCCC-----------eEEEEEcCCcc-ccceeeecCCCCceeEE-EeeCCCEEEEEcC-CCcEEE
Q 028802 42 SVVLMK-NGRKVVCGSQSG-----------TVLLYSWGYFK-DCSDRFVGLSPNSVDAL-LKLDEDRVITGSE-NGLISL 106 (203)
Q Consensus 42 ~l~~~~-~~~~l~~~~~d~-----------~i~v~d~~~~~-~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-dg~v~v 106 (203)
..++.+ +++.++.|+.+. .+.+||..+.. ..+..+...+.....++ +.++++++++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 456677 788888876532 57888886421 11222221011112223 5688999999884 457999
Q ss_pred EEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe-CC-----CcEEEEeCCCc
Q 028802 107 VGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HD-----SMLKLWDLDDI 155 (203)
Q Consensus 107 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-----~~i~iwd~~~~ 155 (203)
||+.+.+-...-..+....-.+++..++++.++.|+ .+ ..+.+||..+.
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 999876544322222111223456667999999888 44 56899998764
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.018 Score=43.49 Aligned_cols=137 Identities=13% Similarity=0.033 Sum_probs=71.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEee-------cCCcccEEEEEEeeC---CCEEEEec-C-------CCeEE
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRS-------EFSEEELTSVVLMKN---GRKVVCGS-Q-------SGTVL 62 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~-------~~~~~~i~~l~~~~~---~~~l~~~~-~-------d~~i~ 62 (203)
|+|.|+|+.|+++...|.|++++.. +.....+ .........|+++|+ +..|+++. . ...|.
T Consensus 23 i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~ 101 (353)
T 2g8s_A 23 LAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVG 101 (353)
T ss_dssp EEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEE
T ss_pred EEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEE
Confidence 5789999834444567999999853 3321111 112345789999995 44444432 2 23566
Q ss_pred EEEcCCccc---ccee-eecC-----CCCceeEE-EeeCCCEEEEEcC-------------CCcEEEEEccCCc------
Q 028802 63 LYSWGYFKD---CSDR-FVGL-----SPNSVDAL-LKLDEDRVITGSE-------------NGLISLVGILPNR------ 113 (203)
Q Consensus 63 v~d~~~~~~---~~~~-~~~~-----~~~~v~~~-~~~~~~~l~~~~~-------------dg~v~v~d~~~~~------ 113 (203)
.|++..... ..+. +... .......+ |.|+|.+.++.+. .|.|.-++....-
T Consensus 102 r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf 181 (353)
T 2g8s_A 102 YGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPF 181 (353)
T ss_dssp EEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTT
T ss_pred EEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCC
Confidence 666642111 1111 1110 11123456 8999965555432 2467667654210
Q ss_pred ------eeeee-ccCCCcceEEEEEeC-CCCeEEE
Q 028802 114 ------IIQPI-AEHSEYPIESLALSH-DRKFLGS 140 (203)
Q Consensus 114 ------~~~~~-~~~~~~~i~~~~~~~-~~~~l~~ 140 (203)
....+ .++ . ....++|+| +|+.+++
T Consensus 182 ~~~~~~~~~i~a~G~-r-np~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 182 IKESGVRAEIWSYGI-R-NPQGMAMNPWSNALWLN 214 (353)
T ss_dssp TTSTTSCTTEEEECC-S-EEEEEEEETTTTEEEEE
T ss_pred cCCCCCCccEEEEcC-c-CccceEEECCCCCEEEE
Confidence 11112 223 2 478899999 5554443
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.054 Score=39.51 Aligned_cols=144 Identities=10% Similarity=0.012 Sum_probs=73.0
Q ss_pred cCCEEEEEcCC-----CeEEEEEcCCCeEEE--eecCCcccEEEEEEeeCCCEEEEecCC-------CeEEEEEcCCccc
Q 028802 6 DAMKLLGTSGD-----GTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQS-------GTVLLYSWGYFKD 71 (203)
Q Consensus 6 ~~~~l~~~~~d-----~~i~v~d~~~~~~~~--~~~~~~~~i~~l~~~~~~~~l~~~~~d-------~~i~v~d~~~~~~ 71 (203)
+++.++.|+.+ ..+.+||+.+..-.. .+....... +++ .-++..++.|+.+ ..+.+||+.+ .
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~--~ 183 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSV-GVG-VVGGLLYAVGGYDVASRQCLSTVECYNATT--N 183 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSC-EEE-EETTEEEEECCEETTTTEECCCEEEEETTT--T
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCc-eEE-EECCEEEEEeCCCCCCCccccEEEEEeCCC--C
Confidence 45556666544 357788887764322 222212211 222 2356666666542 3588888864 2
Q ss_pred cceeeecCCCC--ceeEEEeeCCCEEEEEcCC-----CcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCC
Q 028802 72 CSDRFVGLSPN--SVDALLKLDEDRVITGSEN-----GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 72 ~~~~~~~~~~~--~v~~~~~~~~~~l~~~~~d-----g~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 144 (203)
.+..+.. ... .-.++...++.+++.|+.+ ..+.+||+.+.+-...-.......-.+++ ..++..++.|+.+
T Consensus 184 ~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~i~v~GG~~ 261 (302)
T 2xn4_A 184 EWTYIAE-MSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC-AVNGLLYVVGGDD 261 (302)
T ss_dssp EEEEECC-CSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBC
T ss_pred cEEECCC-CccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE-EECCEEEEECCcC
Confidence 3333222 111 1112233467777777654 36889998876433221111110111222 2366777777754
Q ss_pred C-----cEEEEeCCCc
Q 028802 145 S-----MLKLWDLDDI 155 (203)
Q Consensus 145 ~-----~i~iwd~~~~ 155 (203)
+ .+.+||+.+.
T Consensus 262 ~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 262 GSCNLASVEYYNPTTD 277 (302)
T ss_dssp SSSBCCCEEEEETTTT
T ss_pred CCcccccEEEEcCCCC
Confidence 3 4888888654
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.12 Score=43.06 Aligned_cols=142 Identities=13% Similarity=0.032 Sum_probs=82.0
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeec--CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC---
Q 028802 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS--- 80 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~--- 80 (203)
++. |..|+.++-|..++..+++...... .....|.++...+++.+. .++. +-|.+|+.... . ...+....
T Consensus 417 ~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lw-igt~-~Gl~~~~~~~~-~-~~~~~~~~~~~ 491 (781)
T 3v9f_A 417 EGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIW-IGTH-AGVFVIDLASK-K-VIHHYDTSNSQ 491 (781)
T ss_dssp TSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEE-EEET-TEEEEEESSSS-S-CCEEECTTTSS
T ss_pred CCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEE-EEEC-CceEEEeCCCC-e-EEecccCcccc
Confidence 444 4445555678888877765433221 134568888877777644 4444 55888887632 2 22222101
Q ss_pred --CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccC---CCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 81 --PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEH---SEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 81 --~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
...+.++ ..++|.+.+ |+..+-|..|+..+++.. .+... ....|.++...++|...+.. ..|.|..||..+
T Consensus 492 ~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~ 568 (781)
T 3v9f_A 492 LLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARN 568 (781)
T ss_dssp CSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTT
T ss_pred cccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCC
Confidence 3457777 577776554 444333777887665433 23211 12368888888888755543 455558888765
Q ss_pred c
Q 028802 155 I 155 (203)
Q Consensus 155 ~ 155 (203)
.
T Consensus 569 ~ 569 (781)
T 3v9f_A 569 F 569 (781)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.066 Score=39.15 Aligned_cols=144 Identities=8% Similarity=0.045 Sum_probs=74.2
Q ss_pred cCCEEEEEcCC----CeEEEEEcCCCeEE--EeecCCcccEEEEEEeeCCCEEEEecCC------CeEEEEEcCCccccc
Q 028802 6 DAMKLLGTSGD----GTLSVCNLRKNTVQ--TRSEFSEEELTSVVLMKNGRKVVCGSQS------GTVLLYSWGYFKDCS 73 (203)
Q Consensus 6 ~~~~l~~~~~d----~~i~v~d~~~~~~~--~~~~~~~~~i~~l~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~ 73 (203)
++..++.|+.+ ..+.+||+.++.-. ..+.........+ .-++..++.|+.+ ..+.+||..+ ..+
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~d~~~--~~W 130 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAAC--AAEGKIYTSGGSEVGNSALYLFECYDTRT--ESW 130 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEE--EETTEEEEECCBBTTBSCCCCEEEEETTT--TEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEE--EECCEEEEECCCCCCCcEeeeEEEEeCCC--Cce
Confidence 45556666644 67888998876432 2222222222222 2366777777654 4688888864 233
Q ss_pred eeeecCCCC--ceeEEEeeCCCEEEEEcC---------CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe
Q 028802 74 DRFVGLSPN--SVDALLKLDEDRVITGSE---------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 74 ~~~~~~~~~--~v~~~~~~~~~~l~~~~~---------dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 142 (203)
..+.. ... .-.++...++++++.|+. -..+.+||+.+..-...-.......-.+++.. +++.++.|+
T Consensus 131 ~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG 208 (306)
T 3ii7_A 131 HTKPS-MLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGG 208 (306)
T ss_dssp EEECC-CSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECC
T ss_pred EeCCC-CcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeC
Confidence 33322 111 111222346667777653 34588999887643322111111011222222 666677766
Q ss_pred CC-----CcEEEEeCCCc
Q 028802 143 HD-----SMLKLWDLDDI 155 (203)
Q Consensus 143 ~d-----~~i~iwd~~~~ 155 (203)
.+ ..+.+||+.+.
T Consensus 209 ~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 209 QNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp EETTEEBCCEEEEETTTT
T ss_pred CCCCCCCceEEEeeCCCC
Confidence 43 35888888764
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.15 Score=41.56 Aligned_cols=151 Identities=8% Similarity=-0.096 Sum_probs=87.3
Q ss_pred cccccCCEEEEE-cCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCC-EEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 2 TFAADAMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
+|++.+..|+.+ ...+.|+.+++........+...-.....+++.+.+. ++++-...+.|.+.++.. .....+...
T Consensus 355 d~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G--~~~~~l~~~ 432 (619)
T 3s94_A 355 DYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNG--TMRKILISE 432 (619)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEECT
T ss_pred EEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCC--CeEEEEEEC
Confidence 455544444433 3456777777665333223333334566889887444 445555678899998863 333333320
Q ss_pred CCCceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe-CCCcEEEEeCCCc
Q 028802 80 SPNSVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLDDI 155 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~--dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~ 155 (203)
.-.....+ +.|....|+.... ...|...++. |.....+....-.....+++++++..|+.+. ..+.|..+++...
T Consensus 433 ~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~ 511 (619)
T 3s94_A 433 DLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALD-GSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGT 511 (619)
T ss_dssp TCCSEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSC
T ss_pred CCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccC-CCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCC
Confidence 33456777 7887555555543 3566666654 3333333221122678899999777776655 5577888887654
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0079 Score=45.20 Aligned_cols=144 Identities=12% Similarity=0.120 Sum_probs=82.7
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCc-ccEEEEEEe--e-CCCEEEEe-cCCCeEEEEEcCCccccceeeec---
Q 028802 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSE-EELTSVVLM--K-NGRKVVCG-SQSGTVLLYSWGYFKDCSDRFVG--- 78 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~i~~l~~~--~-~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~--- 78 (203)
+.++++++.||.|+-+|..+|+.+..+.... .++....-. + ++..++.. ..||.|+.++... +.....+..
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~-G~~~~~~~~~~l 88 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQ-GLQKLPLSIRQL 88 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTT-EEEEEEEEHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCC-CcEEeeeccccc
Confidence 3478889999999999999999999887541 233221100 1 22333333 5799999998764 322222211
Q ss_pred CCCCceeE----EE-e----eCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcc------eEEEEEe-----CCCCeE
Q 028802 79 LSPNSVDA----LL-K----LDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP------IESLALS-----HDRKFL 138 (203)
Q Consensus 79 ~~~~~v~~----~~-~----~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~------i~~~~~~-----~~~~~l 138 (203)
....++.. +. . ..+..+++++.+|.+...|+.+|+.+..+....... ..|.... ..+..|
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v 168 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMI 168 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEE
T ss_pred eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeE
Confidence 00111110 00 0 145678899999999999999999998886542100 0011111 123566
Q ss_pred EEEeCCCcEEEEe
Q 028802 139 GSISHDSMLKLWD 151 (203)
Q Consensus 139 ~~~~~d~~i~iwd 151 (203)
+.+..+..+.+.+
T Consensus 169 ~ig~~~y~v~~~~ 181 (339)
T 2be1_A 169 VIGKTIFELGIHS 181 (339)
T ss_dssp EEEEEEEECEECC
T ss_pred EEecceEEEEEEC
Confidence 6767666777766
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.067 Score=39.12 Aligned_cols=143 Identities=10% Similarity=0.069 Sum_probs=73.9
Q ss_pred cCCEEEEEcCC------CeEEEEEcCCCeEEE--eecCCcccEEEEEEeeCCCEEEEecC---------CCeEEEEEcCC
Q 028802 6 DAMKLLGTSGD------GTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQ---------SGTVLLYSWGY 68 (203)
Q Consensus 6 ~~~~l~~~~~d------~~i~v~d~~~~~~~~--~~~~~~~~i~~l~~~~~~~~l~~~~~---------d~~i~v~d~~~ 68 (203)
++++++.|+.+ ..+.+||+.+..-.. .+......- +++ .-++..++.|+. -..+.+||+.+
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~ 178 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSH-GMV-EANGLIYVCGGSLGNNVSGRVLNSCEVYDPAT 178 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSC-EEE-EETTEEEEECCEESCTTTCEECCCEEEEETTT
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCccee-EEE-EECCEEEEECCCCCCCCcccccceEEEeCCCC
Confidence 45566666654 458899988764322 222111111 122 236666666654 34588888864
Q ss_pred ccccceeeecCCCCc--eeEEEeeCCCEEEEEcCC-----CcEEEEEccCCceeeeeccCC-CcceEEEEEeCCCCeEEE
Q 028802 69 FKDCSDRFVGLSPNS--VDALLKLDEDRVITGSEN-----GLISLVGILPNRIIQPIAEHS-EYPIESLALSHDRKFLGS 140 (203)
Q Consensus 69 ~~~~~~~~~~~~~~~--v~~~~~~~~~~l~~~~~d-----g~v~v~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~ 140 (203)
..+..+.. ...+ -.++..-++++++.|+.+ ..+.+||+.+.+-...-.... ......+.+ ++..++.
T Consensus 179 --~~W~~~~~-~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~ 253 (306)
T 3ii7_A 179 --ETWTELCP-MIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVL 253 (306)
T ss_dssp --TEEEEECC-CSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEE
T ss_pred --CeEEECCC-ccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEE
Confidence 23333322 1111 112223366677777653 458899988764332211111 111222223 6677777
Q ss_pred EeCC-----CcEEEEeCCCc
Q 028802 141 ISHD-----SMLKLWDLDDI 155 (203)
Q Consensus 141 ~~~d-----~~i~iwd~~~~ 155 (203)
|+.+ ..+.+||+.+.
T Consensus 254 GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 254 AGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp ECBCSSSBCCEEEEEETTTT
T ss_pred eCcCCCeeeeeEEEEcCCCC
Confidence 7743 45888888764
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.092 Score=38.21 Aligned_cols=145 Identities=7% Similarity=-0.050 Sum_probs=74.7
Q ss_pred cCCEEEEEcCC-----CeEEEEEcCCCe-----EEEeecCCcccEEEEEEeeCCCEEEEecCC-----CeEEEEEcCCcc
Q 028802 6 DAMKLLGTSGD-----GTLSVCNLRKNT-----VQTRSEFSEEELTSVVLMKNGRKVVCGSQS-----GTVLLYSWGYFK 70 (203)
Q Consensus 6 ~~~~l~~~~~d-----~~i~v~d~~~~~-----~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d-----~~i~v~d~~~~~ 70 (203)
+++.++.|+.+ ..+.+||+.+.. .+..+.........+ ..++..++.|+.+ ..+.+||+.+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~--~~~~~lyv~GG~~~~~~~~~~~~~d~~~-- 137 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGAT--TLGDMIYVSGGFDGSRRHTSMERYDPNI-- 137 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEE--EETTEEEEECCBCSSCBCCEEEEEETTT--
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEE--EECCEEEEEcccCCCcccceEEEEcCCC--
Confidence 45566666643 468899987654 222222222222222 2366677777643 3688888763
Q ss_pred ccceeeecCCCC--ceeEEEeeCCCEEEEEcCC-----CcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeC
Q 028802 71 DCSDRFVGLSPN--SVDALLKLDEDRVITGSEN-----GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH 143 (203)
Q Consensus 71 ~~~~~~~~~~~~--~v~~~~~~~~~~l~~~~~d-----g~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 143 (203)
..+..+.. ... .-.++...++++++.|+.+ ..+.+||+.+.+-...-.......-.+++ ..++..++.|+.
T Consensus 138 ~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~ 215 (301)
T 2vpj_A 138 DQWSMLGD-MQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVA-LLNDHIYVVGGF 215 (301)
T ss_dssp TEEEEEEE-CSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCB
T ss_pred CeEEECCC-CCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEE-EECCEEEEEeCC
Confidence 23333322 111 1112233467777777654 45889998876543221111110111222 225667777765
Q ss_pred C-----CcEEEEeCCCcc
Q 028802 144 D-----SMLKLWDLDDIL 156 (203)
Q Consensus 144 d-----~~i~iwd~~~~~ 156 (203)
+ ..+.+||+.+..
T Consensus 216 ~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 216 DGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp CSSSBCCCEEEEETTTTE
T ss_pred CCCcccceEEEEeCCCCc
Confidence 3 468899987653
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.061 Score=39.56 Aligned_cols=144 Identities=9% Similarity=-0.059 Sum_probs=72.3
Q ss_pred cCCEEEEEcCC--------CeEEEEEcCCCeEEE--eecCCcccEEEEEEeeCCCEEEEecC------CCeEEEEEcCCc
Q 028802 6 DAMKLLGTSGD--------GTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQ------SGTVLLYSWGYF 69 (203)
Q Consensus 6 ~~~~l~~~~~d--------~~i~v~d~~~~~~~~--~~~~~~~~i~~l~~~~~~~~l~~~~~------d~~i~v~d~~~~ 69 (203)
+++.++.|+.+ ..+.+||+.+.+-.. .+......- + +..-++..++.|+. -..+.+||..+
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~-~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~- 174 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGH-T-VLSHMDLVYVIGGKGSDRKCLNKMCVYDPKK- 174 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSC-E-EEEETTEEEEECCBCTTSCBCCCEEEEETTT-
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccce-e-EEEECCEEEEEeCCCCCCcccceEEEEeCCC-
Confidence 34455566532 458889988764322 222211111 1 22246667777765 24688898864
Q ss_pred cccceeeecCCCCc--eeEEEeeCCCEEEEEcCCC-----cEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe
Q 028802 70 KDCSDRFVGLSPNS--VDALLKLDEDRVITGSENG-----LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 70 ~~~~~~~~~~~~~~--v~~~~~~~~~~l~~~~~dg-----~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 142 (203)
..+..+.. ...+ -.++...++++++.|+.++ .+.+||+.+.+-...-.......-.+++ .-+++.++.|+
T Consensus 175 -~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~l~v~GG 251 (315)
T 4asc_A 175 -FEWKELAP-MQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLV-SLVGTLYAIGG 251 (315)
T ss_dssp -TEEEECCC-CSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEEEE
T ss_pred -CeEEECCC-CCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEE-EECCEEEEECC
Confidence 23333322 1111 1122334677777777643 4888998876433221111110111222 22566777776
Q ss_pred CC--------------CcEEEEeCCCc
Q 028802 143 HD--------------SMLKLWDLDDI 155 (203)
Q Consensus 143 ~d--------------~~i~iwd~~~~ 155 (203)
.+ ..+.+||+.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 252 FATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp EEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred ccccCcCCccccccccCcEEEecCCCC
Confidence 53 23677887654
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.018 Score=40.48 Aligned_cols=135 Identities=8% Similarity=-0.079 Sum_probs=75.2
Q ss_pred CEEEEEcCCCeEEEEEcCCCe------EEEee-cCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccc-cc---eee
Q 028802 8 MKLLGTSGDGTLSVCNLRKNT------VQTRS-EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD-CS---DRF 76 (203)
Q Consensus 8 ~~l~~~~~d~~i~v~d~~~~~------~~~~~-~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~---~~~ 76 (203)
.+|+....| ++++=....+. ....+ ++.-..+..++|+|++.+.++ .+|.++-.+..+... .. .+.
T Consensus 5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~ 81 (236)
T 1tl2_A 5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKK 81 (236)
T ss_dssp CCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEE
T ss_pred eEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccE
Confidence 456666666 77766655432 11112 111246779999999987666 677766666532110 00 111
Q ss_pred ecC-CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC-ceee----eeccCCC-cceEEEEEeCCCCeEEEEeCCCcEE
Q 028802 77 VGL-SPNSVDAL-LKLDEDRVITGSENGLISLVGILPN-RIIQ----PIAEHSE-YPIESLALSHDRKFLGSISHDSMLK 148 (203)
Q Consensus 77 ~~~-~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~-~~~~----~~~~~~~-~~i~~~~~~~~~~~l~~~~~d~~i~ 148 (203)
.+. .-....++ |.|+|.+.++ .||.|+-++..+. .... +..+... ..+..+.+.|+|...+.. |+.++
T Consensus 82 IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 82 IGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp EECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred ecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 110 01124667 7999988877 5698887775331 1110 1111101 258899999999877666 77754
Q ss_pred E
Q 028802 149 L 149 (203)
Q Consensus 149 i 149 (203)
-
T Consensus 158 r 158 (236)
T 1tl2_A 158 K 158 (236)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.12 Score=37.88 Aligned_cols=144 Identities=8% Similarity=-0.027 Sum_probs=72.5
Q ss_pred cCCEEEEEcCC-----CeEEEEEcCCCeEEE--eecCCcccEEEEEEeeCCCEEEEecCC-----CeEEEEEcCCccccc
Q 028802 6 DAMKLLGTSGD-----GTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQS-----GTVLLYSWGYFKDCS 73 (203)
Q Consensus 6 ~~~~l~~~~~d-----~~i~v~d~~~~~~~~--~~~~~~~~i~~l~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~ 73 (203)
+++.++.|+.+ ..+.+||+.+..-.. .+......-..+. -++..++.|+.+ ..+.+||+.+ ..+
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~--~~W 196 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV--LNRLLYAVGGFDGTNRLNSAECYYPER--NEW 196 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTT--TEE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE--ECCEEEEEeCCCCCCcCceEEEEeCCC--CeE
Confidence 45555665532 458888987764322 2222122112222 266677777654 4588888763 233
Q ss_pred eeeecCCCC--ceeEEEeeCCCEEEEEcCC-----CcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCC--
Q 028802 74 DRFVGLSPN--SVDALLKLDEDRVITGSEN-----GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD-- 144 (203)
Q Consensus 74 ~~~~~~~~~--~v~~~~~~~~~~l~~~~~d-----g~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-- 144 (203)
..+.. ... .-.++..-++.+++.|+.+ ..+.+||+.+.+-...-.......-.+++. -+++.++.|+.+
T Consensus 197 ~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~ 274 (308)
T 1zgk_A 197 RMITA-MNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGH 274 (308)
T ss_dssp EECCC-CSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSS
T ss_pred eeCCC-CCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE-ECCEEEEEcCcCCC
Confidence 32221 111 1112223366777777654 468999988764332211111101112222 256677777643
Q ss_pred ---CcEEEEeCCCc
Q 028802 145 ---SMLKLWDLDDI 155 (203)
Q Consensus 145 ---~~i~iwd~~~~ 155 (203)
..+.+||+.+.
T Consensus 275 ~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 275 TFLDSVECYDPDTD 288 (308)
T ss_dssp CBCCEEEEEETTTT
T ss_pred cccceEEEEcCCCC
Confidence 35778887654
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.019 Score=45.88 Aligned_cols=101 Identities=13% Similarity=0.052 Sum_probs=67.7
Q ss_pred cEEEEEEeeCCCEEEEecC-CCeEEEEEcCCccc-----c-------ceeeecCCCCceeEEEeeCCCEEEEEcCCCcEE
Q 028802 39 ELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKD-----C-------SDRFVGLSPNSVDALLKLDEDRVITGSENGLIS 105 (203)
Q Consensus 39 ~i~~l~~~~~~~~l~~~~~-d~~i~v~d~~~~~~-----~-------~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~ 105 (203)
....+..+|||+++++++. +.++.++|+..... . ...... ..++....|.++|.-..+...|..|.
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-GlGPlHt~Fd~~G~aYTtlfidSqvv 402 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-GLGPLHTTFDGRGNAYTTLFIDSQVV 402 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-CSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-CCcccEEEECCCCceEeeeeecceEE
Confidence 3567889999999887765 78999999973111 1 112222 34455555999996666667899999
Q ss_pred EEEccCC----------ceeeeeccCCCcceEEEEE------eCCCCeEEEEe
Q 028802 106 LVGILPN----------RIIQPIAEHSEYPIESLAL------SHDRKFLGSIS 142 (203)
Q Consensus 106 v~d~~~~----------~~~~~~~~~~~~~i~~~~~------~~~~~~l~~~~ 142 (203)
.|++... ..+..+..|.+ +-.+.- .|+|++|++..
T Consensus 403 kWni~~a~~~~~g~~~~~v~~k~dv~Yq--pGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 403 KWNMEEAVRAYKGEKVNYIKQKLDVHYQ--PGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEHHHHHHHHTTCCCCCEEEEEECSSC--EEEEEETTTTSTTCCSCEEEEEE
T ss_pred EEeccHHHHHhcCccCCeeeeccccccC--CcccccCCCccCCCCccEEEEec
Confidence 9998753 45666766643 444433 57888888876
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.15 Score=37.57 Aligned_cols=146 Identities=12% Similarity=0.042 Sum_probs=69.9
Q ss_pred cCCEEEEEcCC-------CeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC------CCeEEEEEcCCcccc
Q 028802 6 DAMKLLGTSGD-------GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ------SGTVLLYSWGYFKDC 72 (203)
Q Consensus 6 ~~~~l~~~~~d-------~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~------d~~i~v~d~~~~~~~ 72 (203)
+++.++.|+.+ ..+.+||+.+.+-...-..........+...++..++.|+. ...+.+||+.+ ..
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~--~~ 186 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKK--GD 186 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTT--TE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCC--CE
Confidence 44555666543 35788888776432211111111111122246667677664 24588899864 23
Q ss_pred ceeeecCCCC--ceeEEEeeCCCEEEEEcCC-----CcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCC-
Q 028802 73 SDRFVGLSPN--SVDALLKLDEDRVITGSEN-----GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD- 144 (203)
Q Consensus 73 ~~~~~~~~~~--~v~~~~~~~~~~l~~~~~d-----g~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d- 144 (203)
+..+.. ... .-.++..-++++++.|+.+ ..+.+||+.+.+-...-.......-.+++ ..++..++.|+.+
T Consensus 187 W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~ 264 (318)
T 2woz_A 187 WKDLAP-MKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLV-SLAGSLYAIGGFAM 264 (318)
T ss_dssp EEEECC-CSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEE-EETTEEEEECCBCC
T ss_pred EEECCC-CCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEE-EECCEEEEECCeec
Confidence 333322 111 1112223466777777643 34778898776433221111110111222 2355666666643
Q ss_pred -------------CcEEEEeCCCc
Q 028802 145 -------------SMLKLWDLDDI 155 (203)
Q Consensus 145 -------------~~i~iwd~~~~ 155 (203)
..+.+||+.+.
T Consensus 265 ~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 265 IQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp BC----CCBCCBCCCEEEEETTTT
T ss_pred cCCCCceeccceeeeEEEEeCCCC
Confidence 34667776553
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.15 Score=37.07 Aligned_cols=144 Identities=10% Similarity=0.008 Sum_probs=72.5
Q ss_pred cCCEEEEEcCC-----CeEEEEEcCCCeEE--EeecCCcccEEEEEEeeCCCEEEEecCCC-----eEEEEEcCCccccc
Q 028802 6 DAMKLLGTSGD-----GTLSVCNLRKNTVQ--TRSEFSEEELTSVVLMKNGRKVVCGSQSG-----TVLLYSWGYFKDCS 73 (203)
Q Consensus 6 ~~~~l~~~~~d-----~~i~v~d~~~~~~~--~~~~~~~~~i~~l~~~~~~~~l~~~~~d~-----~i~v~d~~~~~~~~ 73 (203)
++..++.|+.+ ..+.+||..+.+-. ..+........ ++ .-++..++.|+.++ .+.+||+.+ ..+
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~-~~-~~~~~iyv~GG~~~~~~~~~~~~~d~~~--~~W 136 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLG-AA-VLNGLLYAVGGFDGSTGLSSVEAYNIKS--NEW 136 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCE-EE-EETTEEEEEEEECSSCEEEEEEEEETTT--TEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceE-EE-EECCEEEEEcCCCCCccCceEEEEeCCC--CeE
Confidence 44556666543 35888998876432 22222222211 22 23666777776543 577788753 233
Q ss_pred eeeecCCCCc--eeEEEeeCCCEEEEEcCC-------CcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCC
Q 028802 74 DRFVGLSPNS--VDALLKLDEDRVITGSEN-------GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 74 ~~~~~~~~~~--v~~~~~~~~~~l~~~~~d-------g~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 144 (203)
..+.. ...+ -.++...++++++.|+.+ ..+.+||+.+.+-...-.......-.+++ ..++..++.|+.+
T Consensus 137 ~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~ 214 (302)
T 2xn4_A 137 FHVAP-MNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVG-VLNNLLYAVGGHD 214 (302)
T ss_dssp EEECC-CSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBS
T ss_pred eecCC-CCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEE-EECCEEEEECCCC
Confidence 33322 1111 112223466677776542 35889998876433221111110111222 2256677777654
Q ss_pred -----CcEEEEeCCCc
Q 028802 145 -----SMLKLWDLDDI 155 (203)
Q Consensus 145 -----~~i~iwd~~~~ 155 (203)
..+.+||+.+.
T Consensus 215 ~~~~~~~~~~yd~~~~ 230 (302)
T 2xn4_A 215 GPLVRKSVEVYDPTTN 230 (302)
T ss_dssp SSSBCCCEEEEETTTT
T ss_pred CCcccceEEEEeCCCC
Confidence 36888988764
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.19 Score=37.32 Aligned_cols=109 Identities=8% Similarity=-0.037 Sum_probs=61.6
Q ss_pred CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc
Q 028802 35 FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR 113 (203)
Q Consensus 35 ~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~ 113 (203)
.....+..+.+.+++.+++++...+.++-.|- .+.....+.......+..+ +.+++.++ .++.+|.+++.....++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~--gG~tW~~~~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~ 236 (327)
T 2xbg_A 160 EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP--GQTAWEPHNRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSE 236 (327)
T ss_dssp SCCCCEEEEEECTTSCEEEEETTSSEEEEECT--TCSSCEEEECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEE
T ss_pred CCCcceEEEEEcCCCcEEEEECCCcEEEEeCC--CCCceeECCCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCC
Confidence 33456889999998888877654443333332 1233333322134456667 67887665 44557777766422233
Q ss_pred eeeeeccC---CCcceEEEEEeCCCCeEEEEeCCCcE
Q 028802 114 IIQPIAEH---SEYPIESLALSHDRKFLGSISHDSML 147 (203)
Q Consensus 114 ~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~d~~i 147 (203)
.-..+... ....+.++.+.+++..++++. ++.|
T Consensus 237 tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i 272 (327)
T 2xbg_A 237 NWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL 272 (327)
T ss_dssp EECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE
T ss_pred eeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE
Confidence 32222211 122588899998877666554 6666
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.35 Score=40.36 Aligned_cols=140 Identities=12% Similarity=0.114 Sum_probs=79.7
Q ss_pred EEEEcCCCeEEEEEcCCCeEEEee---cCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee--cCCCCce
Q 028802 10 LLGTSGDGTLSVCNLRKNTVQTRS---EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV--GLSPNSV 84 (203)
Q Consensus 10 l~~~~~d~~i~v~d~~~~~~~~~~---~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~~~v 84 (203)
|..|+.++-|.+|+..++...... ......|.++...+++.+.+ |+..+-+..++..+. ....+. ......|
T Consensus 376 lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~--~~~~~~~~~~~~~~v 452 (781)
T 3v9f_A 376 LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLK--KFQIIELEKNELLDV 452 (781)
T ss_dssp EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSC--EEEECCSTTTCCCCE
T ss_pred EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCC--cEEEeccCCCCCCeE
Confidence 444554556888887654332211 12235688888777776544 666566888887532 222222 1023567
Q ss_pred eEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccC----CCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 85 DAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEH----SEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 85 ~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
.++ ..+++. |..|+. +-|.+|+..+++........ ....|.++...++|+..+ ++..+-|..|+..+.
T Consensus 453 ~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~ 525 (781)
T 3v9f_A 453 RVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQ 525 (781)
T ss_dssp EEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCC
T ss_pred EEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCC
Confidence 777 455665 445555 45888998766543222111 023688998888887554 444344777887654
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.2 Score=37.73 Aligned_cols=102 Identities=14% Similarity=0.064 Sum_probs=57.8
Q ss_pred cccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccc-cceee---ecCCCCceeEE-EeeC---CCEEEEEcC----C---
Q 028802 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD-CSDRF---VGLSPNSVDAL-LKLD---EDRVITGSE----N--- 101 (203)
Q Consensus 37 ~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~---~~~~~~~v~~~-~~~~---~~~l~~~~~----d--- 101 (203)
-.....|+|.|+++++++ ...+.|++++.. +. .+..+ .. .......+ ++|+ +..|+++.. +
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~~--G~~~~~~~~v~~~-g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISPS--GKKLVASFDVANV-GEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEEEECSS--CEEEEEECCCCCS-TTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEEEEeCC--CceEeeccceeec-CCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 345789999999985554 556999988732 22 12111 11 22446667 8887 555555433 2
Q ss_pred -CcEEEEEccCC-------cee-eeeccCCCcceEEEEEeCCCCeEEEEe
Q 028802 102 -GLISLVGILPN-------RII-QPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 102 -g~v~v~d~~~~-------~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~ 142 (203)
..|..|+.... +.+ ..+..........++|.|||..+++.+
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 56777776543 111 112211111245689999998666643
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.17 Score=38.00 Aligned_cols=115 Identities=12% Similarity=0.120 Sum_probs=65.0
Q ss_pred cccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee---ecCCCCceeEE-EeeC---CCEEEEEcC-C-----Cc
Q 028802 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF---VGLSPNSVDAL-LKLD---EDRVITGSE-N-----GL 103 (203)
Q Consensus 37 ~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~~~v~~~-~~~~---~~~l~~~~~-d-----g~ 103 (203)
-...+.++|.|+|+++++ ...+.|.+++ ......+..+ .. .......+ ++|+ +..|+++.. . +.
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~-~g~~~~~~~~~v~~~-g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR-EGRLSTYAELSVYHR-GESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE-TTEEEEEEECCCCCS-TTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE-CCCccEeecceEeec-CCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 345679999999985555 5569999988 3211111111 11 23446667 8888 555555443 2 56
Q ss_pred EEEEEccCCc-----ee-eeecc--CCCcceEEEEEeCCCCeEEEEeC-------------CCcEEEEeCCC
Q 028802 104 ISLVGILPNR-----II-QPIAE--HSEYPIESLALSHDRKFLGSISH-------------DSMLKLWDLDD 154 (203)
Q Consensus 104 v~v~d~~~~~-----~~-~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-------------d~~i~iwd~~~ 154 (203)
|..++...+. .+ ..+.. ........++|.|+|..+++.+. .+.|.-++...
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG 178 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG 178 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC
Confidence 7778776431 11 11321 10112467999999976665432 24666666654
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.2 Score=36.71 Aligned_cols=144 Identities=7% Similarity=-0.028 Sum_probs=72.1
Q ss_pred cCCEEEEEcC-----C------CeEEEEEcCCCeEEE--eecCCcccEEEEEEeeCCCEEEEecCC--------CeEEEE
Q 028802 6 DAMKLLGTSG-----D------GTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQS--------GTVLLY 64 (203)
Q Consensus 6 ~~~~l~~~~~-----d------~~i~v~d~~~~~~~~--~~~~~~~~i~~l~~~~~~~~l~~~~~d--------~~i~v~ 64 (203)
+++.++.|+. . ..+.+||..+++-.. .+....... +++ .-++..++.|+.+ ..+.+|
T Consensus 45 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~ 122 (315)
T 4asc_A 45 ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLF-GLG-EALNSIYVVGGREIKDGERCLDSVMCY 122 (315)
T ss_dssp TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESC-EEE-EETTEEEEECCEESSTTCCBCCCEEEE
T ss_pred CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhce-eEE-EECCEEEEEeCCcCCCCCcccceEEEE
Confidence 5566666662 1 127788887764322 111111111 122 2256666666632 458888
Q ss_pred EcCCccccceeeecCCCCc--eeEEEeeCCCEEEEEcC------CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCC
Q 028802 65 SWGYFKDCSDRFVGLSPNS--VDALLKLDEDRVITGSE------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK 136 (203)
Q Consensus 65 d~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~l~~~~~------dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 136 (203)
|..+ ..+..+.. -..+ -.++...++++++.|+. -..+.+||+.+.+-...-.......-.+++ .-+++
T Consensus 123 d~~~--~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~ 198 (315)
T 4asc_A 123 DRLS--FKWGESDP-LPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGAT-VHDGR 198 (315)
T ss_dssp ETTT--TEEEECCC-CSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTE
T ss_pred CCCC--CcEeECCC-CCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEE-EECCE
Confidence 8864 22333222 1111 11223456677777765 246889998876433221111110111222 22667
Q ss_pred eEEEEeCCC-----cEEEEeCCCc
Q 028802 137 FLGSISHDS-----MLKLWDLDDI 155 (203)
Q Consensus 137 ~l~~~~~d~-----~i~iwd~~~~ 155 (203)
.++.|+.++ .+.+||+.+.
T Consensus 199 iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 199 IIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp EEEEEEECSSSEEEEEEEEETTTT
T ss_pred EEEEeccCCCCccceEEEEECCCC
Confidence 777777544 4788888765
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.17 Score=37.09 Aligned_cols=144 Identities=11% Similarity=-0.009 Sum_probs=72.1
Q ss_pred cCCEEEEEcC----C-----CeEEEEEcCCCeEEE--eecCCcccEEEEEEeeCCCEEEEecCC-----CeEEEEEcCCc
Q 028802 6 DAMKLLGTSG----D-----GTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQS-----GTVLLYSWGYF 69 (203)
Q Consensus 6 ~~~~l~~~~~----d-----~~i~v~d~~~~~~~~--~~~~~~~~i~~l~~~~~~~~l~~~~~d-----~~i~v~d~~~~ 69 (203)
++++++.|+. + ..+.+||+.+..-.. .+.........+. -++..++.|+.+ ..+.+||..+
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~- 146 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPER- 146 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTT-
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEE--ECCEEEEEcCCCCCcccccEEEECCCC-
Confidence 4455566654 2 458888887764322 2222122222222 266677776643 4578888764
Q ss_pred cccceeeecCCCCc--eeEEEeeCCCEEEEEcCC-----CcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe
Q 028802 70 KDCSDRFVGLSPNS--VDALLKLDEDRVITGSEN-----GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 70 ~~~~~~~~~~~~~~--v~~~~~~~~~~l~~~~~d-----g~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 142 (203)
..+..+.. ...+ -.++..-++.+++.|+.+ ..+.+||+.+.+-...-.......-.+++.. ++..++.|+
T Consensus 147 -~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG 223 (308)
T 1zgk_A 147 -DEWHLVAP-MLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGG 223 (308)
T ss_dssp -TEEEECCC-CSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECC
T ss_pred -CeEeECCC-CCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeC
Confidence 22332221 1111 112223366777777654 4588999877643322111111011122222 666777776
Q ss_pred CC-----CcEEEEeCCCc
Q 028802 143 HD-----SMLKLWDLDDI 155 (203)
Q Consensus 143 ~d-----~~i~iwd~~~~ 155 (203)
.+ ..+.+||+.+.
T Consensus 224 ~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 224 YDGQDQLNSVERYDVETE 241 (308)
T ss_dssp BCSSSBCCCEEEEETTTT
T ss_pred CCCCCccceEEEEeCCCC
Confidence 54 45889998765
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.27 Score=36.24 Aligned_cols=137 Identities=9% Similarity=0.077 Sum_probs=78.7
Q ss_pred ccccCCEEEEEc--CCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCC--------------CeEEEEEc
Q 028802 3 FAADAMKLLGTS--GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS--------------GTVLLYSW 66 (203)
Q Consensus 3 ~sp~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d--------------~~i~v~d~ 66 (203)
|++++..|+... .++.|+..+...... ..+.. .. +--+++++.+|+.+... ..|+..++
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~-~~l~~--~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~ 95 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSNI-HKLSN--DT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR 95 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCSC-EEEEE--EE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCCC-EEccC--Cc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence 456777776653 356677777654332 22222 11 23457899998877653 24555555
Q ss_pred CCccccceeeecCCCCceeEEEeeCCCEEEEEc----CCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe
Q 028802 67 GYFKDCSDRFVGLSPNSVDALLKLDEDRVITGS----ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~----~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 142 (203)
. +.....+.. ... ..+++++..|+... ....|+..++.. .....+..+ . + ..++|+++.|+..+
T Consensus 96 d--g~~~~~l~~-~~~---~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~-~--~--~~~~~~g~~iy~t~ 163 (302)
T 3s25_A 96 N--GHGSTVLDP-DPC---IYASLIGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKNH-Y--L--FTCNTSDRYFYYNN 163 (302)
T ss_dssp T--SCCCEEEEC-SCE---EEEEEETTEEEEEEESSSSCEEEEEEETTS-CCCEEEESS-C--C--CCSEEETTEEEEEC
T ss_pred C--CCcceEeec-CCc---cEEEEeCCEEEEEeecCCCCceEEEEECCC-CCeEEEeCC-C--c--eEeeEECCEEEEEe
Confidence 4 333333433 211 13688999999876 234566666653 334445444 2 2 35678888887665
Q ss_pred C-CCcEEEEeCCCcc
Q 028802 143 H-DSMLKLWDLDDIL 156 (203)
Q Consensus 143 ~-d~~i~iwd~~~~~ 156 (203)
. ...|.+-++.+..
T Consensus 164 ~g~~~Iy~~~l~g~~ 178 (302)
T 3s25_A 164 PKNGQLYRYDTASQS 178 (302)
T ss_dssp TTTCCEEEEETTTTE
T ss_pred CCCceEEEEECCCCC
Confidence 4 5678887776654
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.38 Score=35.85 Aligned_cols=137 Identities=8% Similarity=-0.015 Sum_probs=64.1
Q ss_pred CeEEEEEcCCCeE--EEeecCCcccEEEEEEeeCCCEEEEecC------CCeEEEEEcCCccccceeeecC--CCCcee-
Q 028802 17 GTLSVCNLRKNTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQ------SGTVLLYSWGYFKDCSDRFVGL--SPNSVD- 85 (203)
Q Consensus 17 ~~i~v~d~~~~~~--~~~~~~~~~~i~~l~~~~~~~~l~~~~~------d~~i~v~d~~~~~~~~~~~~~~--~~~~v~- 85 (203)
..+.+||+.+..- +..+......-.+++. -++..++.|+. ...+.+||+......+..+... ......
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~ 246 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG 246 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence 5788999887642 2233221111022222 25666666653 3457778762222333333220 111111
Q ss_pred EEEeeCCCEEEEEcCC----------------------CcEEEEEccCCce--eeeeccCCCcceEEEEEeCCCCeEEEE
Q 028802 86 ALLKLDEDRVITGSEN----------------------GLISLVGILPNRI--IQPIAEHSEYPIESLALSHDRKFLGSI 141 (203)
Q Consensus 86 ~~~~~~~~~l~~~~~d----------------------g~v~v~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~ 141 (203)
++...++.+++.|+.+ ..+.+||+.+.+- +..+... . ....+...+++.++.|
T Consensus 247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r--~~~~~~~~~~~i~v~G 323 (357)
T 2uvk_A 247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQG-R--AYGVSLPWNNSLLIIG 323 (357)
T ss_dssp EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSC-C--BSSEEEEETTEEEEEE
T ss_pred eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCC-c--ccceeEEeCCEEEEEe
Confidence 1234566777777632 2477899876543 2223222 1 1122233467778888
Q ss_pred eCCC------cEEEEeCCCccc
Q 028802 142 SHDS------MLKLWDLDDILK 157 (203)
Q Consensus 142 ~~d~------~i~iwd~~~~~~ 157 (203)
+.++ .|.++++++.+.
T Consensus 324 G~~~~~~~~~~v~~l~~~~~~~ 345 (357)
T 2uvk_A 324 GETAGGKAVTDSVLITVKDNKV 345 (357)
T ss_dssp EECGGGCEEEEEEEEEC-CCSC
T ss_pred eeCCCCCEeeeEEEEEEcCcEe
Confidence 8543 355567766543
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.38 Score=35.30 Aligned_cols=144 Identities=8% Similarity=-0.017 Sum_probs=70.9
Q ss_pred cCCEEEEEcC----CC-------eEEEEEcCCCeEEE--eecCCcccEEEEEEeeCCCEEEEecCC-------CeEEEEE
Q 028802 6 DAMKLLGTSG----DG-------TLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQS-------GTVLLYS 65 (203)
Q Consensus 6 ~~~~l~~~~~----d~-------~i~v~d~~~~~~~~--~~~~~~~~i~~l~~~~~~~~l~~~~~d-------~~i~v~d 65 (203)
++..++.|+. ++ .+.+||..+.+-.. .+....... +++. -++..++.|+.+ ..+.+||
T Consensus 56 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd 133 (318)
T 2woz_A 56 QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF-GLGE-VDDKIYVVAGKDLQTEASLDSVLCYD 133 (318)
T ss_dssp SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC-EEEE-ETTEEEEEEEEBTTTCCEEEEEEEEE
T ss_pred CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc-ceEE-ECCEEEEEcCccCCCCcccceEEEEe
Confidence 5566677762 11 27788887764322 122111111 2222 256667777653 3577888
Q ss_pred cCCccccceeeecCCCCce--eEEEeeCCCEEEEEcC------CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCe
Q 028802 66 WGYFKDCSDRFVGLSPNSV--DALLKLDEDRVITGSE------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF 137 (203)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~l~~~~~------dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 137 (203)
..+ ..+..+.. ...+. .++...++.+++.|+. -..+.+||+.+.+-...-.......-.+++. -++..
T Consensus 134 ~~~--~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i 209 (318)
T 2woz_A 134 PVA--AKWSEVKN-LPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKI 209 (318)
T ss_dssp TTT--TEEEEECC-CSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEE
T ss_pred CCC--CCEeECCC-CCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEE
Confidence 753 23333322 11111 1223356777777764 2358899988765332211111111122222 25667
Q ss_pred EEEEeCC-----CcEEEEeCCCc
Q 028802 138 LGSISHD-----SMLKLWDLDDI 155 (203)
Q Consensus 138 l~~~~~d-----~~i~iwd~~~~ 155 (203)
++.|+.+ ..+.+||+.+.
T Consensus 210 yv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 210 VIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp EEEEEEETTEEEEEEEEEETTTC
T ss_pred EEEcCcCCCCccceEEEEECCCC
Confidence 7777643 34678887665
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.77 Score=37.97 Aligned_cols=147 Identities=11% Similarity=0.065 Sum_probs=76.5
Q ss_pred cCCEEEEEcCC------CeEEEEEcCCCeEEE--eecCCcccEEEEEEeeCCCEEEEecCCC--eEEEEEcCCcccccee
Q 028802 6 DAMKLLGTSGD------GTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQSG--TVLLYSWGYFKDCSDR 75 (203)
Q Consensus 6 ~~~~l~~~~~d------~~i~v~d~~~~~~~~--~~~~~~~~i~~l~~~~~~~~l~~~~~d~--~i~v~d~~~~~~~~~~ 75 (203)
+++.++.|+.+ ..+.+||..+..-.. .+...... .+++...++..++.|+.++ .+.+||..+ ..+..
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t--~~W~~ 527 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTE--EIFKD 527 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTT--TEEEE
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCC--CceEE
Confidence 56666676643 357888988753322 22211111 1222224778888887654 688999864 23333
Q ss_pred eecC-----CCCceeEE-EeeC-CCEEEEEcC--C-----CcEEEEEccCCce-----eeeec---cCCCcceEEEEEeC
Q 028802 76 FVGL-----SPNSVDAL-LKLD-EDRVITGSE--N-----GLISLVGILPNRI-----IQPIA---EHSEYPIESLALSH 133 (203)
Q Consensus 76 ~~~~-----~~~~v~~~-~~~~-~~~l~~~~~--d-----g~v~v~d~~~~~~-----~~~~~---~~~~~~i~~~~~~~ 133 (203)
+... ......++ +... +.+++.|+. + ..+.+||+.+... ...+. ....... +++...
T Consensus 528 ~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~ 606 (695)
T 2zwa_A 528 VTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYIT 606 (695)
T ss_dssp CCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEE
T ss_pred ccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeC
Confidence 2210 11122223 4444 667777765 2 4588999987661 11111 1111112 233333
Q ss_pred CCCeEEEEeC--------CCcEEEEeCCCcc
Q 028802 134 DRKFLGSISH--------DSMLKLWDLDDIL 156 (203)
Q Consensus 134 ~~~~l~~~~~--------d~~i~iwd~~~~~ 156 (203)
++..++.|+. ...|.+||+.+..
T Consensus 607 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 607 PRKLLIVGGTSPSGLFDRTNSIISLDPLSET 637 (695)
T ss_dssp TTEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred CCEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence 3677777774 2458888887653
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=95.02 E-value=1.7 Score=38.27 Aligned_cols=130 Identities=8% Similarity=0.058 Sum_probs=75.4
Q ss_pred eEEEEEcCCCeEEEeecCC-cccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc--ceeeecCCCCceeEE-EeeC--
Q 028802 18 TLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC--SDRFVGLSPNSVDAL-LKLD-- 91 (203)
Q Consensus 18 ~i~v~d~~~~~~~~~~~~~-~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~--~~~~~~~~~~~v~~~-~~~~-- 91 (203)
.|++++......+...... ...|...+.+ +.+++.++ .+.+.++.+.. +.. ..... -...+.|+ +.|.
T Consensus 493 ~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-g~~l~~fel~~-~~L~~~~~~~--l~~evscl~i~~~~~ 566 (1158)
T 3ei3_A 493 SVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-GRALYYLQIHP-QELRQISHTE--MEHEVACLDITPLGD 566 (1158)
T ss_dssp CEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-TTEEEEEEEET-TEEEEEEEEE--CSSCEEEEECCCCSS
T ss_pred EEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-CCEEEEEEeeC-CceeeecccC--CCCceEEEEeecCCC
Confidence 3556665444444444432 2345555443 34666664 67788887753 221 11112 34568888 5542
Q ss_pred ----CCEEEEEcC-CCcEEEEEccCCceeeeeccCCCcceEEEEEeC--CCCeEEEEeCCCcEEEEeCC
Q 028802 92 ----EDRVITGSE-NGLISLVGILPNRIIQPIAEHSEYPIESLALSH--DRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 92 ----~~~l~~~~~-dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~iwd~~ 153 (203)
+.+++.|.. |++|+++++.+.+.+............++.+.. ...+|..|-.||.+..+.+.
T Consensus 567 ~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 567 SNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLN 635 (1158)
T ss_dssp STTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEEC
T ss_pred CcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEc
Confidence 478999997 999999999876655443322112344554432 33577888899998766553
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=94.32 E-value=1.2 Score=33.46 Aligned_cols=109 Identities=9% Similarity=0.015 Sum_probs=59.9
Q ss_pred ecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccc-cceee----ecCCCCceeEE-EeeC---CCEEEEE---cC
Q 028802 33 SEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD-CSDRF----VGLSPNSVDAL-LKLD---EDRVITG---SE 100 (203)
Q Consensus 33 ~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~----~~~~~~~v~~~-~~~~---~~~l~~~---~~ 100 (203)
+...-...+.|+|.|+|.++++--..|.|++++...... .+..+ .. .......+ ++|+ ...|++. ..
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~-g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPS-GEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCB-TTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeec-CCCCceeeEeccccccCCEEEEEEecCC
Confidence 333345678999999999877766589999887542111 11111 12 24456667 8885 3444432 23
Q ss_pred CCcEEEEEccCC----------cee-eeeccCCCcceEEEEEeCCCCeEEEEe
Q 028802 101 NGLISLVGILPN----------RII-QPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 101 dg~v~v~d~~~~----------~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~ 142 (203)
...|.-|.+..+ +.+ ..+..........|+|.|||.++++.+
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence 445655655431 111 112211011245689999998766654
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=94.32 E-value=1.5 Score=34.34 Aligned_cols=148 Identities=15% Similarity=0.087 Sum_probs=89.0
Q ss_pred cccCCEEEEEc-------CCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCC---CEEEEecC---CCeEEEEEcCCc-
Q 028802 4 AADAMKLLGTS-------GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG---RKVVCGSQ---SGTVLLYSWGYF- 69 (203)
Q Consensus 4 sp~~~~l~~~~-------~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~---~~l~~~~~---d~~i~v~d~~~~- 69 (203)
+++.+.++..+ -.|.+.+|..+.+ .-+.+++|......+....+. ..+..+.. .+.+++-++...
T Consensus 159 d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~ 237 (494)
T 1bpo_A 159 DAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPP 237 (494)
T ss_dssp CTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCC
T ss_pred CCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCc
Confidence 56677654332 1367889998765 446677876655444332111 23333333 378888888542
Q ss_pred -cc------cceeeec--CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEE
Q 028802 70 -KD------CSDRFVG--LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLG 139 (203)
Q Consensus 70 -~~------~~~~~~~--~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 139 (203)
+. .+..+.. ....-.-++ .++....++..+.-|.|++||++++.++..-+-..+ .|..-+.+....=++
T Consensus 238 ~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~-~iF~t~~~~~~~Gi~ 316 (494)
T 1bpo_A 238 TGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGII 316 (494)
T ss_dssp TTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEEETTTTEEE
T ss_pred cCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCC-ceEEecccCCCCcEE
Confidence 11 1111111 011123334 688888999999999999999999999877665534 676656655555566
Q ss_pred EEeCCCcEEEEeCC
Q 028802 140 SISHDSMLKLWDLD 153 (203)
Q Consensus 140 ~~~~d~~i~iwd~~ 153 (203)
.....|.|.--.+.
T Consensus 317 ~Vnr~GqVl~v~v~ 330 (494)
T 1bpo_A 317 GVNRKGQVLSVCVE 330 (494)
T ss_dssp EEETTCEEEEEEEC
T ss_pred EEccCceEEEEEEc
Confidence 66677776655544
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=94.18 E-value=2 Score=35.47 Aligned_cols=148 Identities=8% Similarity=0.043 Sum_probs=78.3
Q ss_pred cCCEEEEEcCC----CeEEEEEcCCCeEEEee-c-----CCcc-cEEEEEEee-CCCEEEEecCC------CeEEEEEcC
Q 028802 6 DAMKLLGTSGD----GTLSVCNLRKNTVQTRS-E-----FSEE-ELTSVVLMK-NGRKVVCGSQS------GTVLLYSWG 67 (203)
Q Consensus 6 ~~~~l~~~~~d----~~i~v~d~~~~~~~~~~-~-----~~~~-~i~~l~~~~-~~~~l~~~~~d------~~i~v~d~~ 67 (203)
++..++.|+.+ ..+.+||..++.-...- . .... .-.+++..+ ++..++.|+.+ ..+.+||..
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~ 476 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK 476 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence 45566666642 46888998776432211 1 1111 112333333 67777777653 357788876
Q ss_pred CccccceeeecC--CCCceeEEEeeCCCEEEEEcCCC--cEEEEEccCCceeeee-----ccCCCcceEEEEEeCC-CCe
Q 028802 68 YFKDCSDRFVGL--SPNSVDALLKLDEDRVITGSENG--LISLVGILPNRIIQPI-----AEHSEYPIESLALSHD-RKF 137 (203)
Q Consensus 68 ~~~~~~~~~~~~--~~~~v~~~~~~~~~~l~~~~~dg--~v~v~d~~~~~~~~~~-----~~~~~~~i~~~~~~~~-~~~ 137 (203)
+ ..+..+... ......++.-.++.+++.|+.++ .+.+||+.+..-...- ... .....++.+..+ +..
T Consensus 477 t--~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~-r~~~~a~v~~~~~~~i 553 (695)
T 2zwa_A 477 T--REWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQN-SLVSAGLEFDPVSKQG 553 (695)
T ss_dssp T--TEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGS-CCBSCEEEEETTTTEE
T ss_pred C--CcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCc-ccceeEEEEeCCCCEE
Confidence 4 233332220 11111222224788888887654 6899998876533221 111 112233556655 566
Q ss_pred EEEEeC--C-----CcEEEEeCCCcc
Q 028802 138 LGSISH--D-----SMLKLWDLDDIL 156 (203)
Q Consensus 138 l~~~~~--d-----~~i~iwd~~~~~ 156 (203)
++.|+. + ..+.+||+.+..
T Consensus 554 yv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 554 IILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp EEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred EEECCcCCCCCeeeCcEEEEEccCCc
Confidence 677765 2 358888987654
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.16 E-value=1.3 Score=32.99 Aligned_cols=48 Identities=10% Similarity=0.045 Sum_probs=25.1
Q ss_pred CeEEEEEcCCccccceeeecCCCC--ce-eEEEeeCCCEEEEEcC------CCcEEEEEc
Q 028802 59 GTVLLYSWGYFKDCSDRFVGLSPN--SV-DALLKLDEDRVITGSE------NGLISLVGI 109 (203)
Q Consensus 59 ~~i~v~d~~~~~~~~~~~~~~~~~--~v-~~~~~~~~~~l~~~~~------dg~v~v~d~ 109 (203)
..+.+||..+ ..+..+.. -.. .. .++...++.+++.|+. ...+.+||+
T Consensus 168 ~~v~~yd~~~--~~W~~~~~-~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 168 KFLLSFDPST--QQWSYAGE-SPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp CEEEEEETTT--TEEEEEEE-CSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEEC
T ss_pred ccEEEEeCCC--CcEEECCC-CCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEe
Confidence 5788899864 33333322 111 11 2233346666777653 345777876
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=94.06 E-value=1.4 Score=33.22 Aligned_cols=130 Identities=8% Similarity=0.082 Sum_probs=76.4
Q ss_pred CCeEEEEEcCC--Ce--EEEeecCC-cccEEEEEEeeCCCEEEEec-----------------CCCeEEEEEcCCccccc
Q 028802 16 DGTLSVCNLRK--NT--VQTRSEFS-EEELTSVVLMKNGRKVVCGS-----------------QSGTVLLYSWGYFKDCS 73 (203)
Q Consensus 16 d~~i~v~d~~~--~~--~~~~~~~~-~~~i~~l~~~~~~~~l~~~~-----------------~d~~i~v~d~~~~~~~~ 73 (203)
..+|.+|.+.. +. .+..+.+. -...+.+.+.++|.+.++.. ..|.++.++. +. +
T Consensus 138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~---~~-~ 213 (355)
T 3sre_A 138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP---ND-V 213 (355)
T ss_dssp CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT---TC-C
T ss_pred CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC---Ce-E
Confidence 45677776653 22 23344332 24578999999998777654 1245555553 22 2
Q ss_pred eeeecCCCCceeEE-EeeCCCEEEEEc-CCCcEEEEEccC-Cce--eeeeccCCCcceEEEEEeC-CCCeEEEEeCC-Cc
Q 028802 74 DRFVGLSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILP-NRI--IQPIAEHSEYPIESLALSH-DRKFLGSISHD-SM 146 (203)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~~~~~l~~~~-~dg~v~v~d~~~-~~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d-~~ 146 (203)
..+.. .-.....+ |+|+++.++.+. ..+.|+.|++.. +.. ...+.. ....-.+++.+ +|++.+++..+ +.
T Consensus 214 ~~~~~-~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~--~g~PDGi~vD~e~G~lwva~~~~g~~ 290 (355)
T 3sre_A 214 RVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF--DTLVDNISVDPVTGDLWVGCHPNGMR 290 (355)
T ss_dssp EEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC--SSEEEEEEECTTTCCEEEEEESCHHH
T ss_pred EEeec-CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeC--CCCCceEEEeCCCCcEEEEecCCceE
Confidence 23322 23445667 899998887765 478899999863 322 123322 22567789999 59877766533 34
Q ss_pred EEEEeC
Q 028802 147 LKLWDL 152 (203)
Q Consensus 147 i~iwd~ 152 (203)
|..|+.
T Consensus 291 v~~~~P 296 (355)
T 3sre_A 291 IFFYDA 296 (355)
T ss_dssp HHSCCT
T ss_pred EEEECC
Confidence 444443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=93.70 E-value=1.3 Score=39.79 Aligned_cols=138 Identities=10% Similarity=0.147 Sum_probs=82.3
Q ss_pred CeEEEEEcCCC-eEEEeecCC----cccEEEEEEeeCCCEEEEec-------CCCeEEEEEcCCccccceeeecCCCCce
Q 028802 17 GTLSVCNLRKN-TVQTRSEFS----EEELTSVVLMKNGRKVVCGS-------QSGTVLLYSWGYFKDCSDRFVGLSPNSV 84 (203)
Q Consensus 17 ~~i~v~d~~~~-~~~~~~~~~----~~~i~~l~~~~~~~~l~~~~-------~d~~i~v~d~~~~~~~~~~~~~~~~~~v 84 (203)
..|+.|++... .+...+..| ..+|..-..+++.++++..+ -.|.+.+|.+. ...-+.+.+ |.+..
T Consensus 125 ~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e--r~~sQ~ieg-ha~~F 201 (1630)
T 1xi4_A 125 NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD--RKVSQPIEG-HAASF 201 (1630)
T ss_pred CeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecc--cccchhhhH-hHhhh
Confidence 56788887532 333333333 45677777788888776432 35789999886 344556666 66555
Q ss_pred eEE-E--ee-CCCEEEEEcC---CCcEEEEEccCC---ceee------ee-c--cCCCcceEEEEEeCCCCeEEEEeCCC
Q 028802 85 DAL-L--KL-DEDRVITGSE---NGLISLVGILPN---RIIQ------PI-A--EHSEYPIESLALSHDRKFLGSISHDS 145 (203)
Q Consensus 85 ~~~-~--~~-~~~~l~~~~~---dg~v~v~d~~~~---~~~~------~~-~--~~~~~~i~~~~~~~~~~~l~~~~~d~ 145 (203)
..+ . .+ ...+++.+.. .+.++|.++... .+.. .+ . ...+++| ++..++.-..+...+.-|
T Consensus 202 ~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv-~~~vs~k~g~iy~itk~G 280 (1630)
T 1xi4_A 202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV-AMQISEKHDVVFLITKYG 280 (1630)
T ss_pred heeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcce-EEEeccccCEEEEEecCc
Confidence 444 2 12 2233333332 368999887532 1111 11 1 1123343 577777777788888899
Q ss_pred cEEEEeCCCcccC
Q 028802 146 MLKLWDLDDILKG 158 (203)
Q Consensus 146 ~i~iwd~~~~~~~ 158 (203)
.|++||+.|+..-
T Consensus 281 ~~~~~d~~t~~~i 293 (1630)
T 1xi4_A 281 YIHLYDLETGTCI 293 (1630)
T ss_pred eEEEEecccchhh
Confidence 9999999998764
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=93.46 E-value=3.8 Score=36.15 Aligned_cols=141 Identities=14% Similarity=0.154 Sum_probs=77.6
Q ss_pred EEEEEcCCCeEEEEEcCCCeEEE-eecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-CCCCceeE
Q 028802 9 KLLGTSGDGTLSVCNLRKNTVQT-RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-LSPNSVDA 86 (203)
Q Consensus 9 ~l~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~v~~ 86 (203)
+|++|- ...|++|++...+.+. ..... ..|..+.....++++++|..-..+.++..+.....+..+.. .....+++
T Consensus 897 ~Lla~i-g~~l~vy~l~~~~~L~~~~~~~-~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta 974 (1158)
T 3ei3_A 897 KLLASI-NSTVRLYEWTTEKELRTECNHY-NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSA 974 (1158)
T ss_dssp EEEEEE-TTEEEEEEECTTSCEEEEEEEC-CCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEE
T ss_pred EEEEEc-CCEEEEEECCCCceEEEEeecc-ccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEE
Confidence 444443 3789999998654332 11111 11223333345788999988777777655432333333332 13445666
Q ss_pred EEeeCCCEEEEEcCCCcEEEEEccCC--------ceeeeeccCCCcceEEEE---EeCC---------CCeEEEEeCCCc
Q 028802 87 LLKLDEDRVITGSENGLISLVGILPN--------RIIQPIAEHSEYPIESLA---LSHD---------RKFLGSISHDSM 146 (203)
Q Consensus 87 ~~~~~~~~l~~~~~dg~v~v~d~~~~--------~~~~~~~~~~~~~i~~~~---~~~~---------~~~l~~~~~d~~ 146 (203)
+..-+...++.+..+|.|.++..... +....-.-|.+..|+++. +.+. ...++.++.+|.
T Consensus 975 ~~~ld~~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~Gs 1054 (1158)
T 3ei3_A 975 VEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGM 1054 (1158)
T ss_dssp EEEEETTEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSC
T ss_pred EEEEccCcEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCE
Confidence 62223457888899999998876431 111121223233577665 3332 234777888999
Q ss_pred EEEEe
Q 028802 147 LKLWD 151 (203)
Q Consensus 147 i~iwd 151 (203)
|-+.-
T Consensus 1055 Ig~l~ 1059 (1158)
T 3ei3_A 1055 IGLVT 1059 (1158)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87764
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=93.46 E-value=2.2 Score=33.35 Aligned_cols=104 Identities=9% Similarity=0.072 Sum_probs=57.2
Q ss_pred ccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc--ceeeecC-----CCCceeEE-EeeC---CCEEEEEcC------
Q 028802 38 EELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC--SDRFVGL-----SPNSVDAL-LKLD---EDRVITGSE------ 100 (203)
Q Consensus 38 ~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~--~~~~~~~-----~~~~v~~~-~~~~---~~~l~~~~~------ 100 (203)
...+.|+|.|+|+++++-...+.|++++... +.. +..+... ....+..+ ++|+ +..|+++..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~-g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPES-GSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTT-CCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCC-CcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 4567999999999777765445788886532 221 1111110 12345567 8885 555554432
Q ss_pred -------CCcEEEEEccCC-------ceee-eeccCCCcceEEEEEeCCCCeEEEEe
Q 028802 101 -------NGLISLVGILPN-------RIIQ-PIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 101 -------dg~v~v~d~~~~-------~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~ 142 (203)
...|..+++..+ +.+. .+..........|+|.|||.++++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 134555655322 1121 12211111468899999998766654
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=93.30 E-value=2.3 Score=33.25 Aligned_cols=144 Identities=10% Similarity=0.115 Sum_probs=89.3
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCC
Q 028802 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 82 (203)
.+|..+.||.=. ..++.|+|+.+...+....-.+ .|..=.|-.+.. |+..+ +..|+-|++.....+.+.|.. |..
T Consensus 73 MnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~~-l~lVT-~taVyHWsi~~~s~P~kvFdR-~~~ 147 (494)
T 1bpo_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDR-HSS 147 (494)
T ss_dssp ECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETTE-EEEEC-SSEEEEEESSSSCCCEEEEEC-CGG
T ss_pred eCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCCe-EEEEc-CCeeEEecccCCCCchhheec-chh
Confidence 467777776654 5899999999988877776543 465556765543 33332 467999999654456666654 432
Q ss_pred ----ceeEE-EeeCCCEEEEEcC-------CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCC-----eEEEEeC--
Q 028802 83 ----SVDAL-LKLDEDRVITGSE-------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-----FLGSISH-- 143 (203)
Q Consensus 83 ----~v~~~-~~~~~~~l~~~~~-------dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~l~~~~~-- 143 (203)
.|..- .+++.++++..+- .|.+.+|..+. +..+.+.+|.. .-..+-.+|+ .++.+..
T Consensus 148 L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa---~F~~~~~~g~~~~~~lf~fa~r~~ 223 (494)
T 1bpo_A 148 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAA---SFAQFKMEGNAEESTLFCFAVRGQ 223 (494)
T ss_dssp GTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEE---EEEEEECTTCSSEEEEEEEEECST
T ss_pred cccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeeee---eeEEEecCCCCCCceEEEEEEecC
Confidence 22222 4788888775442 46788998764 45567788732 2233433332 2333332
Q ss_pred -CCcEEEEeCCCc
Q 028802 144 -DSMLKLWDLDDI 155 (203)
Q Consensus 144 -d~~i~iwd~~~~ 155 (203)
.+.++|-++...
T Consensus 224 ~g~kLhi~Ei~~~ 236 (494)
T 1bpo_A 224 AGGKLHIIEVGTP 236 (494)
T ss_dssp TCCEEEEEECSCC
T ss_pred CCcEEEEEEcCCC
Confidence 378999998554
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.88 E-value=0.28 Score=36.79 Aligned_cols=107 Identities=7% Similarity=-0.020 Sum_probs=61.0
Q ss_pred CEEEEecCCCeEEEEEcCCccccceeeecCC-CCceeEEE---eeCCCEEEEE--cCCCcEEEEEccCCceeeeeccCC-
Q 028802 50 RKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS-PNSVDALL---KLDEDRVITG--SENGLISLVGILPNRIIQPIAEHS- 122 (203)
Q Consensus 50 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-~~~v~~~~---~~~~~~l~~~--~~dg~v~v~d~~~~~~~~~~~~~~- 122 (203)
..+++++.||.|+-+|..+ ++..-.+.. . ..++...- .+.+..++.+ ..+|.|+.++..+|.....+....
T Consensus 11 ~~V~v~t~dG~l~Ald~~t-G~~~W~~~~-~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l 88 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRN-GHIIWSIEP-ENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL 88 (339)
T ss_dssp EEEEEEETTSCEEEEETTT-TEEEEEECG-GGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred CEEEEEeCCCeEEEEECCC-CcEEEEecC-CccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence 3677888899999988865 444444443 2 11221111 1112234433 589999999988875554433211
Q ss_pred --CcceEE---EEE-e----CCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 123 --EYPIES---LAL-S----HDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 123 --~~~i~~---~~~-~----~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
..++.. ... . ..+..+++++.++.+...|+++++..
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~ 134 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEII 134 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEE
T ss_pred eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEE
Confidence 012221 000 0 14457788999999999999988754
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=91.82 E-value=2.7 Score=37.91 Aligned_cols=146 Identities=10% Similarity=0.125 Sum_probs=84.4
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCC-
Q 028802 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP- 81 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~- 81 (203)
.+|..+.||.=. ..++.|+|+.+...+....-. .+|..=.|-.....-+++ +..|+.|++.....+.+.|.. |.
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~~-e~VvfWkWis~~~l~lVT--~~aVyHW~~~~~s~P~k~fdR-~~~ 147 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNTVALVT--DNAVYHWSMEGESQPVKMFDR-HSS 147 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhcccccC-CCceEEEecCCCeeEEEc--CCeEEEeccCCCCccHHHHhc-chh
Confidence 467777666654 588999999887666655543 346555665444333332 457999999644455555554 42
Q ss_pred ---CceeEE-EeeCCCEEEEEc-------CCCcEEEEEccCCceeeeeccCCCcceEEEEEe--CCCC-eEEEEe---CC
Q 028802 82 ---NSVDAL-LKLDEDRVITGS-------ENGLISLVGILPNRIIQPIAEHSEYPIESLALS--HDRK-FLGSIS---HD 144 (203)
Q Consensus 82 ---~~v~~~-~~~~~~~l~~~~-------~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~--~~~~-~l~~~~---~d 144 (203)
..|..- .+++.++++..+ ..|.+.+|..+. +..+.+.+|.. ....+... +... .++.+. ..
T Consensus 148 L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er-~~sQ~iegha~-~F~~~~~~~~~~~~~l~~f~~~~~~g 225 (1630)
T 1xi4_A 148 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAA-SFAQFKMEGNAEESTLFCFAVRGQAG 225 (1630)
T ss_pred cccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc-ccchhhhHhHh-hhheeccCCCCCCceEEEEEEecCCC
Confidence 233333 478888877544 247899998764 34455666643 22222221 1112 222222 23
Q ss_pred CcEEEEeCCCc
Q 028802 145 SMLKLWDLDDI 155 (203)
Q Consensus 145 ~~i~iwd~~~~ 155 (203)
+.++|-++...
T Consensus 226 ~kLhi~Ei~~~ 236 (1630)
T 1xi4_A 226 GKLHIIEVGTP 236 (1630)
T ss_pred ceEEEEecCCC
Confidence 68999988654
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=91.24 E-value=2.3 Score=34.40 Aligned_cols=70 Identities=10% Similarity=0.124 Sum_probs=49.3
Q ss_pred eeEE-EeeCCCEEEEEcC-CCcEEEEEccC------Cce-------eeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEE
Q 028802 84 VDAL-LKLDEDRVITGSE-NGLISLVGILP------NRI-------IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLK 148 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~-dg~v~v~d~~~------~~~-------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 148 (203)
...+ .+|+|++++.++. +.++.|++++. ++. ....... -.....+|.++|.-..+.-.|..|.
T Consensus 325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G--lGPlHt~Fd~~G~aYTtlfidSqvv 402 (638)
T 3sbq_A 325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG--LGPLHTTFDGRGNAYTTLFIDSQVV 402 (638)
T ss_dssp CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC--SCEEEEEECSSSEEEEEETTTTEEE
T ss_pred CcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC--CcccEEEECCCCceEeeeeecceEE
Confidence 3445 7999999988764 77899999873 111 2223322 2467789999995455566899999
Q ss_pred EEeCCCc
Q 028802 149 LWDLDDI 155 (203)
Q Consensus 149 iwd~~~~ 155 (203)
.|++...
T Consensus 403 kWni~~a 409 (638)
T 3sbq_A 403 KWNMEEA 409 (638)
T ss_dssp EEEHHHH
T ss_pred EEeccHH
Confidence 9998764
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=90.93 E-value=3.9 Score=30.59 Aligned_cols=57 Identities=9% Similarity=0.102 Sum_probs=35.1
Q ss_pred CCCEEEEEcCCCcEEEEEccCCceeee--eccCCCcceEEEEEeCCCCeEEEEe-CCCcE
Q 028802 91 DEDRVITGSENGLISLVGILPNRIIQP--IAEHSEYPIESLALSHDRKFLGSIS-HDSML 147 (203)
Q Consensus 91 ~~~~l~~~~~dg~v~v~d~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i 147 (203)
++.++++....+.|...++..++.... +.......+..+++.|||..+++.. .++.|
T Consensus 288 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 288 QQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEE
T ss_pred CCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEE
Confidence 466776666778888888876543322 2111122689999999998665433 34433
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=90.10 E-value=4.7 Score=31.59 Aligned_cols=48 Identities=15% Similarity=0.122 Sum_probs=30.8
Q ss_pred CcccccCC-EEEEEcCCCeEEEEEcCCC---eEEEeec---------CCcccEEEEEEeeC
Q 028802 1 MTFAADAM-KLLGTSGDGTLSVCNLRKN---TVQTRSE---------FSEEELTSVVLMKN 48 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~i~v~d~~~~---~~~~~~~---------~~~~~i~~l~~~~~ 48 (203)
|+|.|+|. .|+++.+.|.|++++.... ..+..+. .....+..|+|+|+
T Consensus 19 ~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 19 ALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp EECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred EEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 57899996 5556667899999975422 1112221 11456889999986
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=88.19 E-value=2.3 Score=34.50 Aligned_cols=57 Identities=14% Similarity=0.056 Sum_probs=41.7
Q ss_pred eEE-EeeCCCEEEEEcCC------------CcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEE
Q 028802 85 DAL-LKLDEDRVITGSEN------------GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSI 141 (203)
Q Consensus 85 ~~~-~~~~~~~l~~~~~d------------g~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 141 (203)
-.| |+|.|.++++-..+ ..+.+++..+++...-+.++.+..++.++|+||++.|++.
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 445 78999877664332 2466677777877766777766789999999999887665
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=84.89 E-value=2.9 Score=33.94 Aligned_cols=55 Identities=13% Similarity=0.183 Sum_probs=38.0
Q ss_pred CcccccCCEEEEEcCC------------CeEEEEEcCCCeEEEeecCC-cccEEEEEEeeCCCEEEEe
Q 028802 1 MTFAADAMKLLGTSGD------------GTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCG 55 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d------------~~i~v~d~~~~~~~~~~~~~-~~~i~~l~~~~~~~~l~~~ 55 (203)
|+|+|.|++++.-..+ +.+.+.+..++++...+..+ ...++.++|+||++.|++.
T Consensus 481 L~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 481 LGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred eEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 5788999866664322 34566666677766555543 4679999999999887765
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=84.67 E-value=7.6 Score=33.49 Aligned_cols=35 Identities=9% Similarity=0.139 Sum_probs=28.7
Q ss_pred eeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeee
Q 028802 84 VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI 118 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~ 118 (203)
+.++ ..++..++++.+.|+++++|++.+++++.+.
T Consensus 238 ~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 238 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp EEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred EEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 4444 5667889999999999999999999887664
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=84.04 E-value=7.1 Score=31.59 Aligned_cols=59 Identities=15% Similarity=0.043 Sum_probs=39.5
Q ss_pred eeEE-EeeCCCEEEEEcC------------CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe
Q 028802 84 VDAL-LKLDEDRVITGSE------------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~------------dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 142 (203)
...| |.++|.+.+.-.. ...|..++..+++....+.......++.++|+||++.|++.-
T Consensus 478 PDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 3455 7888887773321 125677777777766555544334689999999999887664
|
| >3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=83.51 E-value=10 Score=27.30 Aligned_cols=118 Identities=16% Similarity=0.228 Sum_probs=71.8
Q ss_pred cccEEEEEEee--CCCEEEEecCCCeEEEEEcCCcc-----ccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEE
Q 028802 37 EEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFK-----DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVG 108 (203)
Q Consensus 37 ~~~i~~l~~~~--~~~~l~~~~~d~~i~v~d~~~~~-----~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d 108 (203)
...|..+.. + +..+++..+..|.++...+.... .....+.. ...+..+ .......++..+..|.+..+.
T Consensus 67 ~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lke--gD~l~~~~~~~~~~~ill~T~~G~~~r~~ 143 (276)
T 3no0_A 67 EEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTE--GDEVVSIASSVDETHILLFTKKGRVARFS 143 (276)
T ss_dssp TCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCT--TCCEEEEEECCSSCEEEEEETTSEEEEEE
T ss_pred CCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCC--CCEEEEEEEeCCCCEEEEEECCCEEEEEE
Confidence 455666644 4 46789999999999998875321 11111222 2334334 344556788888999988777
Q ss_pred ccC----C---ceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028802 109 ILP----N---RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 109 ~~~----~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
... + +-...+....+..|.++...+++.+++..+..|.++...+.....
T Consensus 144 ~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~ 199 (276)
T 3no0_A 144 VREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPK 199 (276)
T ss_dssp GGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCC
T ss_pred hhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHccc
Confidence 532 1 111112222222576666666677888999999999888765543
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=83.14 E-value=3.9 Score=33.05 Aligned_cols=57 Identities=12% Similarity=0.168 Sum_probs=38.3
Q ss_pred CcccccCCEEEEEcC------------CCeEEEEEcCCCeEEEeecCC-cccEEEEEEeeCCCEEEEecC
Q 028802 1 MTFAADAMKLLGTSG------------DGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGSQ 57 (203)
Q Consensus 1 l~~sp~~~~l~~~~~------------d~~i~v~d~~~~~~~~~~~~~-~~~i~~l~~~~~~~~l~~~~~ 57 (203)
|+|+++|.+.+.... ...|..++..++++...+... ...++.++|+||++.|+++-+
T Consensus 481 L~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 481 LGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp EEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred eEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEe
Confidence 467888877663321 125666776677766555443 357899999999998877643
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=82.86 E-value=15 Score=28.71 Aligned_cols=30 Identities=10% Similarity=0.133 Sum_probs=22.4
Q ss_pred ccEEEEEEeeCCC-EEEEecCCCeEEEEEcC
Q 028802 38 EELTSVVLMKNGR-KVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 38 ~~i~~l~~~~~~~-~l~~~~~d~~i~v~d~~ 67 (203)
...+.|+|.|++. .|+++...|.|++++..
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 3467899999986 45555678999999753
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=82.39 E-value=12 Score=27.04 Aligned_cols=127 Identities=11% Similarity=0.101 Sum_probs=59.8
Q ss_pred CCeEEEEEcCC-CeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEEEeeCCCE
Q 028802 16 DGTLSVCNLRK-NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDR 94 (203)
Q Consensus 16 d~~i~v~d~~~-~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 94 (203)
+|.|+.|-... +++- .-......|..++... ...+.-. +|.++.|-....++.- .... ....+..+..-....
T Consensus 119 ~G~v~~wG~n~~gqlg-~~~~~~~~i~~i~~G~--~~~~~l~-~G~v~~wG~n~~gqlg-~p~~-~~~~v~~i~~G~~hs 192 (282)
T 3qhy_B 119 DGKVIAWGDDSDGQTT-VPAEAQSGVTALDGGV--YTALAVK-NGGVIAWGDNYFGQTT-VPAE-AQSGVDDVAGGIFHS 192 (282)
T ss_dssp TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECS--SEEEEEE-TTEEEEEECCTTSTTS-CCGG-GGSSEEEEEECSSEE
T ss_pred CCeEEEecCCCCCcCC-CCccCCCCeEEEEccc--CEEEEEE-CCEEEEecCCCCCCCC-Ccee-cCCCeEEEEecCCEE
Confidence 77777776543 2211 1111123455554332 2222223 6888888765333221 1111 123455553333334
Q ss_pred EEEEcCCCcEEEEEccCCceee-eeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 95 VITGSENGLISLVGILPNRIIQ-PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 95 l~~~~~dg~v~v~d~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
++. .+|.|+.|-......+. ..... . .|..|+.-.. +.+... |+.|+.|=....
T Consensus 193 ~al--~~G~v~~wG~n~~gqlg~p~~~~-~-~v~~i~~G~~--h~~al~-~g~v~~wG~n~~ 247 (282)
T 3qhy_B 193 LAL--KDGKVIAWGDNRYKQTTVPTEAL-S-GVSAIASGEW--YSLALK-NGKVIAWGSSRT 247 (282)
T ss_dssp EEE--ETTEEEEEECCTTSTTCCCGGGG-S-SCCEEEECSS--CEEEEE-TTEEEEESTTCC
T ss_pred EEE--ECCeEEEEECCCCCCCCCCcccC-C-CceEEEcCCC--EEEEEE-CCEEEEecCCCC
Confidence 444 58999999754322221 11111 1 4666654333 333333 899999965443
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=80.50 E-value=2.5 Score=36.38 Aligned_cols=34 Identities=26% Similarity=0.151 Sum_probs=29.3
Q ss_pred ceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 125 PIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 125 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.+.+++..++..++++.+.|+++++|++.++..-
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v 270 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCV 270 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeE
Confidence 4677788888899999999999999999988643
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=80.50 E-value=23 Score=29.29 Aligned_cols=137 Identities=20% Similarity=0.139 Sum_probs=73.3
Q ss_pred EEEEcCCCeEEEEEcCCCeEEEee----cCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-----CC
Q 028802 10 LLGTSGDGTLSVCNLRKNTVQTRS----EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-----LS 80 (203)
Q Consensus 10 l~~~~~d~~i~v~d~~~~~~~~~~----~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-----~~ 80 (203)
|..++.+ -|..++..++...... ......|.++....++.+.+ ++.. -+..|+.... ....+.. ..
T Consensus 115 lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~--~~~~~~~~~~~~~~ 189 (758)
T 3ott_A 115 LWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNG--KFEGIPLPVHSSQS 189 (758)
T ss_dssp EEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTT--EEEEECCCCCTTCS
T ss_pred EEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCC--ceEEecCCCccccc
Confidence 4444443 5777777665443210 01234577777766776555 4444 4777876432 1222211 01
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
...|.++ ..+++..|..|+. +-|..++..+++........ ...|.++....+|...+ |+. +-|.+++..+.
T Consensus 190 ~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~-~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~ 261 (758)
T 3ott_A 190 NLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFH-NNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTT 261 (758)
T ss_dssp SCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEE-EEEEEEEEECTTCCEEE-EET-TEEEEECCTTS
T ss_pred cceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCC-CCeEEEEEEcCCCCEEE-EeC-CceeEEecCCC
Confidence 1236777 4566666666664 35778887765432211111 22588888777776554 343 45778877653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 203 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-13 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-04 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 0.001 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-09 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-07 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-08 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 8e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-07 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 7e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.001 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 8e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 0.001 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.002 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.003 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 66.3 bits (160), Expect = 1e-13
Identities = 21/138 (15%), Positives = 51/138 (36%), Gaps = 2/138 (1%)
Query: 15 GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD 74
D + + ++R+ + E ++ ++ NG GS T L+ ++
Sbjct: 204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Query: 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH 133
+ ++ ++ G ++ ++ L +A H + L ++
Sbjct: 264 YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN-RVSCLGVTD 322
Query: 134 DRKFLGSISHDSMLKLWD 151
D + + S DS LK+W+
Sbjct: 323 DGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 38.2 bits (87), Expect = 4e-04
Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 91 DEDRVITGSENGLISLVGILPNRIIQPIAEHSEY-PIESLALSHDRKFLGSISHDSMLKL 149
+ + TGS++ L + ++ + + + I S++ S + L + D +
Sbjct: 237 NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296
Query: 150 WDLDD-----ILKGSGNNISQAA 167
WD +L G N +S
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLG 319
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 37.0 bits (84), Expect = 0.001
Identities = 10/65 (15%), Positives = 25/65 (38%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
++F+ LL D +V + K + ++ + + +G V GS
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335
Query: 61 VLLYS 65
+ +++
Sbjct: 336 LKIWN 340
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 52.8 bits (125), Expect = 4e-09
Identities = 22/171 (12%), Positives = 53/171 (30%), Gaps = 22/171 (12%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLM-------------- 46
+ D + S D T+ V + + + +
Sbjct: 149 VRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGS 208
Query: 47 ------KNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSE 100
K G ++ GS+ T+ ++ C VG L +++ ++
Sbjct: 209 ETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-CLMTLVGHDNWVRGVLFHSGGKFILSCAD 267
Query: 101 NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151
+ + + R ++ + H + SL ++ + S D +K+W+
Sbjct: 268 DKTLRVWDYKNKRCMKTLNAHEH-FVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.0 bits (110), Expect = 4e-07
Identities = 23/191 (12%), Positives = 60/191 (31%), Gaps = 25/191 (13%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
++ + ++ S D T+ + ++ E + V ++G + S T
Sbjct: 107 VSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT 166
Query: 61 VLLYSWG-------------------YFKDCSDRFVGLSPNSVDALLKLDEDRVITGSEN 101
V ++ + + S + + S +++GS +
Sbjct: 167 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD 226
Query: 102 GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD-----IL 156
I + + + + H + + KF+ S + D L++WD + L
Sbjct: 227 KTIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 285
Query: 157 KGSGNNISQAA 167
+ ++
Sbjct: 286 NAHEHFVTSLD 296
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.4 bits (116), Expect = 6e-08
Identities = 27/178 (15%), Positives = 55/178 (30%), Gaps = 23/178 (12%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEEL-------TSVVLMKNGRKVV 53
D + S D + V + + R + E SVV ++G+ VV
Sbjct: 211 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 270
Query: 54 CGSQSGTVLLYSWGYFKDCSDRFVGLSPNSV-----------DALLKLDEDRVITGSENG 102
GS +V L++ + SD S +++ +++GS++
Sbjct: 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 330
Query: 103 LISLVGILPNRIIQPIAEHSE-----YPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155
+ + + H +L + + S D ++W I
Sbjct: 331 GVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.2 bits (92), Expect = 8e-05
Identities = 21/152 (13%), Positives = 51/152 (33%), Gaps = 22/152 (14%)
Query: 48 NGRKVVCGSQSGTVLLYS------WGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSEN 101
+G+ + GS V ++ ++ G + + D V++GS +
Sbjct: 216 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD 275
Query: 102 GLISLVGILPNRIIQPIAE-----------HSEYPIESLALSHDRKFLGSISHDSMLKLW 150
+ L + + + S+A + + +++ S S D + W
Sbjct: 276 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW 335
Query: 151 DLDD-----ILKGSGNNISQAAESDSDGDDMD 177
D +L+G N++ A ++ +
Sbjct: 336 DKKSGNPLLMLQGHRNSVISVAVANGSSLGPE 367
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.7 bits (114), Expect = 1e-07
Identities = 24/161 (14%), Positives = 58/161 (36%), Gaps = 10/161 (6%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
+ D + ++ S D ++ V ++ + + + L +V G+ T
Sbjct: 181 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADST 238
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPI-- 118
V ++ + S L+ +++ VIT S++G + L + I+ +
Sbjct: 239 VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVT 298
Query: 119 --AEHSEYPIESLALSHDRKFLGSISHD----SMLKLWDLD 153
+ S + + S+ + S + + L + D D
Sbjct: 299 LESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (95), Expect = 3e-05
Identities = 24/147 (16%), Positives = 57/147 (38%), Gaps = 5/147 (3%)
Query: 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67
+++ + D + V + T L +G VV GS ++ ++
Sbjct: 148 RRVVSGAYDFMVKVWDPETETCL--HTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE 205
Query: 68 YFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIE 127
S S ++L ++ +++G+ + + + I + +Q + +++
Sbjct: 206 TGNCIHTLTGHQSLTSG---MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSA 262
Query: 128 SLALSHDRKFLGSISHDSMLKLWDLDD 154
L ++ F+ + S D +KLWDL
Sbjct: 263 VTCLQFNKNFVITSSDDGTVKLWDLKT 289
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.0 bits (107), Expect = 7e-07
Identities = 9/63 (14%), Positives = 27/63 (42%)
Query: 91 DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150
D ++ + S + I + + ++ + I + + L + ++ L SIS + +
Sbjct: 249 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308
Query: 151 DLD 153
+ +
Sbjct: 309 NPE 311
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.4 bits (103), Expect = 3e-06
Identities = 10/62 (16%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 91 DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150
++ ++ L++ I E S + S +S D K++ + S D ++
Sbjct: 276 CGKWFVSTGKDNLLNAWRTPYGASIFQSKESS--SVLSCDISVDDKYIVTGSGDKKATVY 333
Query: 151 DL 152
++
Sbjct: 334 EV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (83), Expect = 0.001
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
+ FA + T D L+ +S+ S + S + + + +V GS
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSS-VLSCDISVDDKYIVTGSGDKK 329
Query: 61 VLLYS 65
+Y
Sbjct: 330 ATVYE 334
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 38.3 bits (87), Expect = 3e-04
Identities = 8/63 (12%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 91 DEDRVITGSENGLISLVGILPNRI--IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLK 148
D ++ N + + N+ + + EH+ + + + D + + D
Sbjct: 18 DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNG-QVTGVDWAPDSNRIVTCGTDRNAY 76
Query: 149 LWD 151
+W
Sbjct: 77 VWT 79
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.1 bits (84), Expect = 8e-04
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 113 RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154
+I+Q +Y I + + + L S D L ++ D
Sbjct: 2 QIVQIEQAPKDY-ISDIKIIPSKSLLLITSWDGSLTVYKFDI 42
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (83), Expect = 0.001
Identities = 32/147 (21%), Positives = 55/147 (37%), Gaps = 17/147 (11%)
Query: 14 SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS 73
SGD T+ V N T + + + L R VV GS T+ L+ + +
Sbjct: 155 SGDRTIKVWNTS--TCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDI---ECGA 209
Query: 74 DRFVGLSPNSVDALLKLDEDRVITGSENGLISL---------VGILPNRIIQPIAEHSEY 124
V + ++ D R+++G+ +G I + ++ + EHS
Sbjct: 210 CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG- 268
Query: 125 PIESLALSHDRKFLGSISHDSMLKLWD 151
L D + S SHD + +WD
Sbjct: 269 --RVFRLQFDEFQIVSSSHDDTILIWD 293
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 35.7 bits (80), Expect = 0.002
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154
H++ I +L+ S D K L S + + WD+
Sbjct: 11 HNK-AITALSSSADGKTLFSADAEGHINSWDIST 43
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 35.3 bits (79), Expect = 0.003
Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 3/89 (3%)
Query: 64 YSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGIL-PNRIIQPIAEHS 122
W + + +++ED V TGS + I + + P +II+ + H
Sbjct: 199 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK 258
Query: 123 EYPIESLALSHDRKFLGSISHDSMLKLWD 151
+ + +L + S D+ +K W+
Sbjct: 259 D-GVNNLLWETPSTLV-SSGADACIKRWN 285
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 203 | |||
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.96 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.96 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.96 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.95 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.95 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.95 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.95 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.94 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.94 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.94 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.93 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.93 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.93 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.92 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.92 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.91 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.91 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.91 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.91 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.9 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.9 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.9 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.88 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.88 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.87 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.85 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.85 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.82 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.8 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.79 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.78 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.76 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.75 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.75 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.71 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.7 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.69 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.68 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.66 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.57 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.53 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.49 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.47 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.39 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.39 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.37 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.35 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.32 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.1 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.08 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.01 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.0 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.98 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.86 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.81 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.79 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.78 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.72 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.7 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.66 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.64 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.59 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.53 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.5 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.44 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.36 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.26 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.24 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.13 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.96 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.85 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.68 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.48 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.45 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.26 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.09 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.01 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 96.88 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.87 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.73 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.72 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 96.7 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.67 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 96.56 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.41 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.21 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.06 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 95.58 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 95.27 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 95.26 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 94.92 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 94.76 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 94.38 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 93.61 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 93.48 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 93.19 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 92.98 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 92.08 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 86.19 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 85.77 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 81.71 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 80.92 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.96 E-value=7.5e-28 Score=178.71 Aligned_cols=147 Identities=16% Similarity=0.252 Sum_probs=132.4
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee--ecC
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF--VGL 79 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~ 79 (203)
.+.+.+.++++++.|+.|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|+.|++|++... .....+ ..
T Consensus 191 ~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~-~~~~~~~~~~- 268 (340)
T d1tbga_ 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD-QELMTYSHDN- 268 (340)
T ss_dssp EECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCTT-
T ss_pred ccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccc-cccccccccc-
Confidence 35677889999999999999999999999999999999999999999999999999999999999753 333333 23
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028802 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 151 (203)
+...+.++ |+|++++|++|+.||.|++||+.+++++.++.+|.. +|++++|+|++++|++++.||.|+|||
T Consensus 269 ~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~-~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN-RVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCC-CEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 55678888 999999999999999999999999999999999965 899999999999999999999999997
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.96 E-value=3.4e-27 Score=178.88 Aligned_cols=155 Identities=10% Similarity=0.048 Sum_probs=131.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe--EEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcc-ccceeee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-DCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~ 77 (203)
++|||+|++||+|+.|+.|+||++.+++ .+..+.+|..+|.+++|+|++++|++++.|+.|++||+.... .....+.
T Consensus 13 ~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~ 92 (371)
T d1k8kc_ 13 HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVIL 92 (371)
T ss_dssp EEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECC
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccc
Confidence 4799999999999999999999998775 567788999999999999999999999999999999997432 2233455
Q ss_pred cCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCce----eeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028802 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI----IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
. +...+.++ |+|+++.|++++.++.|++|++..... ......|.. .|.+++|+|++++|++++.|+.|++|++
T Consensus 93 ~-~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~p~~~~l~s~s~D~~v~v~~~ 170 (371)
T d1k8kc_ 93 R-INRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS-TVLSLDWHPNSVLLAAGSCDFKCRIFSA 170 (371)
T ss_dssp C-CSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS-CEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred c-ccccccccccccccccceeecccCcceeeeeeccccccccccccccccc-ccccccccccccceeccccCcEEEEEee
Confidence 6 78889999 999999999999999999999876543 233445543 7999999999999999999999999998
Q ss_pred CCccc
Q 028802 153 DDILK 157 (203)
Q Consensus 153 ~~~~~ 157 (203)
.....
T Consensus 171 ~~~~~ 175 (371)
T d1k8kc_ 171 YIKEV 175 (371)
T ss_dssp CCTTT
T ss_pred ccCcc
Confidence 76543
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.96 E-value=2e-27 Score=176.43 Aligned_cols=155 Identities=12% Similarity=0.199 Sum_probs=136.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeE--EEeecCCcccEEEEEEeeCCCEEEEecC--CCeEEEEEcCCccccceee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQ--SGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~i~~l~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~ 76 (203)
|+|+|+|++|++|+.||+|++|++.++.. ...+..|..+|.+++|+|++++|++++. +..+++|++.. +.....+
T Consensus 64 ~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~-~~~~~~l 142 (311)
T d1nr0a1 64 AKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT-GTSNGNL 142 (311)
T ss_dssp EEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT-CCBCBCC
T ss_pred EEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccccccccccccc-ccccccc
Confidence 47999999999999999999999987643 3567788999999999999999998875 45699999975 4667788
Q ss_pred ecCCCCceeEE-EeeCCCE-EEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 77 VGLSPNSVDAL-LKLDEDR-VITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~-l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
.. |...|.++ |+|++++ +++|+.|+.|++||+++++....+..|.. +|.++.|+|++++|++++.|+.|++||+.+
T Consensus 143 ~~-h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~-~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~ 220 (311)
T d1nr0a1 143 TG-QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTK-FVHSVRYNPDGSLFASTGGDGTIVLYNGVD 220 (311)
T ss_dssp CC-CSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred cc-cccccccccccccceeeecccccccccccccccccccccccccccc-cccccccCcccccccccccccccccccccc
Confidence 88 99999999 9999885 77899999999999999999999998855 899999999999999999999999999987
Q ss_pred cccC
Q 028802 155 ILKG 158 (203)
Q Consensus 155 ~~~~ 158 (203)
....
T Consensus 221 ~~~~ 224 (311)
T d1nr0a1 221 GTKT 224 (311)
T ss_dssp CCEE
T ss_pred cccc
Confidence 6543
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.95 E-value=4.5e-27 Score=174.51 Aligned_cols=156 Identities=15% Similarity=0.190 Sum_probs=136.7
Q ss_pred CcccccCCEEEEEcC--CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCE-EEEecCCCeEEEEEcCCccccceeee
Q 028802 1 MTFAADAMKLLGTSG--DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRK-VVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~-l~~~~~d~~i~v~d~~~~~~~~~~~~ 77 (203)
|+|+|++++|++++. +..++||++.+++....+.+|...|.+++|+|++.+ |++|+.|+.|++||++. ......+.
T Consensus 108 v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~-~~~~~~~~ 186 (311)
T d1nr0a1 108 ISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP-FKFKSTFG 186 (311)
T ss_dssp EEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT-BEEEEEEC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccc-cccccccc
Confidence 579999999998875 466999999999888899999999999999999875 78899999999999985 46677777
Q ss_pred cCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeec-------cCCCcceEEEEEeCCCCeEEEEeCCCcEEE
Q 028802 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA-------EHSEYPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 149 (203)
. |...+.++ ++|+++++++++.|+.|++||+.++..+..+. +|.. .|++++|+|++++|++++.|+.|+|
T Consensus 187 ~-~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~-~V~~~~~s~~~~~l~tgs~Dg~v~i 264 (311)
T d1nr0a1 187 E-HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKI 264 (311)
T ss_dssp C-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEE
T ss_pred c-ccccccccccCccccccccccccccccccccccccccccccccccccccccc-cccccccCCCCCEEEEEeCCCeEEE
Confidence 7 89999999 99999999999999999999999887766553 3533 7999999999999999999999999
Q ss_pred EeCCCcccCC
Q 028802 150 WDLDDILKGS 159 (203)
Q Consensus 150 wd~~~~~~~~ 159 (203)
||++++....
T Consensus 265 wd~~t~~~~~ 274 (311)
T d1nr0a1 265 WNVATLKVEK 274 (311)
T ss_dssp EETTTTEEEE
T ss_pred EECCCCcEEE
Confidence 9999876543
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.95 E-value=2.1e-26 Score=170.79 Aligned_cols=158 Identities=17% Similarity=0.282 Sum_probs=133.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCc-----------
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----------- 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~----------- 69 (203)
|+|+|++++|++|+.||+|+|||+.+++.+..+..|..+|.+++|+|++.++++++.++.+.+|+....
T Consensus 61 l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~ 140 (340)
T d1tbga_ 61 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA 140 (340)
T ss_dssp EEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEEC
T ss_pred EEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceecc
Confidence 579999999999999999999999999999999999999999999999998888888888888775321
Q ss_pred ---------------------------------------------------------------------------cccce
Q 028802 70 ---------------------------------------------------------------------------KDCSD 74 (203)
Q Consensus 70 ---------------------------------------------------------------------------~~~~~ 74 (203)
+.++.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~ 220 (340)
T d1tbga_ 141 GHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ 220 (340)
T ss_dssp CCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEE
Confidence 11222
Q ss_pred eeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC-CcceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028802 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS-EYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
.+.. |...|.++ |+|++.+|++++.|+.|++|++.....+..+.... ...|.+++|+|++++|++++.||.|++||+
T Consensus 221 ~~~~-h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~ 299 (340)
T d1tbga_ 221 TFTG-HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299 (340)
T ss_dssp EECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEET
T ss_pred EEeC-CCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEEC
Confidence 3344 67788999 99999999999999999999999887776553221 237999999999999999999999999999
Q ss_pred CCcccCC
Q 028802 153 DDILKGS 159 (203)
Q Consensus 153 ~~~~~~~ 159 (203)
.++....
T Consensus 300 ~~~~~~~ 306 (340)
T d1tbga_ 300 LKADRAG 306 (340)
T ss_dssp TTCCEEE
T ss_pred CCCcEEE
Confidence 8876543
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=1.2e-26 Score=169.84 Aligned_cols=148 Identities=14% Similarity=0.237 Sum_probs=136.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCC--------------------CEEEEecCCCe
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG--------------------RKVVCGSQSGT 60 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~--------------------~~l~~~~~d~~ 60 (203)
++|+|++++|++++.|+.|++|++.++.....+..+...+.++.|+|++ ..+++++.|+.
T Consensus 149 ~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 228 (317)
T d1vyhc1 149 VRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 228 (317)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE
T ss_pred eecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCE
Confidence 4689999999999999999999999999999999999999999998763 47889999999
Q ss_pred EEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEE
Q 028802 61 VLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLG 139 (203)
Q Consensus 61 i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 139 (203)
|++|++.+ +.++..+.+ |...+.++ ++|++++|++++.||.|++||+.+++++..+.+|.. .|++++|+|++++|+
T Consensus 229 i~~~~~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~-~V~~~~~s~~~~~l~ 305 (317)
T d1vyhc1 229 IKMWDVST-GMCLMTLVG-HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH-FVTSLDFHKTAPYVV 305 (317)
T ss_dssp EEEEETTT-TEEEEEEEC-CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS-CEEEEEECSSSSCEE
T ss_pred EEEEECCC-CcEEEEEeC-CCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCC-CEEEEEEcCCCCEEE
Confidence 99999975 577888888 99999999 899999999999999999999999999999999965 899999999999999
Q ss_pred EEeCCCcEEEEe
Q 028802 140 SISHDSMLKLWD 151 (203)
Q Consensus 140 ~~~~d~~i~iwd 151 (203)
+++.|++|+|||
T Consensus 306 s~s~Dg~i~iWd 317 (317)
T d1vyhc1 306 TGSVDQTVKVWE 317 (317)
T ss_dssp EEETTSEEEEEC
T ss_pred EEeCCCeEEEeC
Confidence 999999999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=3.6e-26 Score=170.97 Aligned_cols=146 Identities=16% Similarity=0.157 Sum_probs=130.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
|+|+++++.+++++.|+.|++||+.+++.+..+. +...|.+++|+|++++|++++.++.+++||+... .. ..... |
T Consensus 189 l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~-~~-~~~~~-~ 264 (337)
T d1gxra_ 189 IDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP-DK-YQLHL-H 264 (337)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS-CE-EEECC-C
T ss_pred ccccccccccccccccccccccccccceeecccc-cccceEEEEEcccccccceecccccccccccccc-cc-ccccc-c
Confidence 4689999999999999999999999998877664 6788999999999999999999999999999753 33 34556 8
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
...+.++ |+|++++|++++.||.|++||+.+++.+..+..+ . .|.+++|+|++++|++++.|+.|+|||+
T Consensus 265 ~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~-~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 265 ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES-S-SVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS-S-CEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCC-C-CEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 8899999 9999999999999999999999999988776533 4 7999999999999999999999999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.5e-25 Score=167.61 Aligned_cols=155 Identities=15% Similarity=0.247 Sum_probs=133.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe-----EEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCc-cccce
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT-----VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF-KDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~-----~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~ 74 (203)
|+|+|+|++|++|+ ||.|+|||+.++. .......|...|.+++|+|++++|++++.|+.|++||+... .....
T Consensus 57 v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~ 135 (337)
T d1gxra_ 57 VTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA 135 (337)
T ss_dssp EEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEE
T ss_pred EEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccc
Confidence 57999999999997 7999999997642 22334578889999999999999999999999999998642 23445
Q ss_pred eeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
.+.. |...+..+ |+|++.++++++.++.|++|++.++++......|.. .|.+++|++++..+++++.|+.|++||++
T Consensus 136 ~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~-~v~~l~~s~~~~~~~~~~~d~~v~i~d~~ 213 (337)
T d1gxra_ 136 ELTS-SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD-GASCIDISNDGTKLWTGGLDNTVRSWDLR 213 (337)
T ss_dssp EEEC-SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred cccc-ccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 6677 88888888 899999999999999999999999998888888855 89999999999999999999999999998
Q ss_pred CcccC
Q 028802 154 DILKG 158 (203)
Q Consensus 154 ~~~~~ 158 (203)
++...
T Consensus 214 ~~~~~ 218 (337)
T d1gxra_ 214 EGRQL 218 (337)
T ss_dssp TTEEE
T ss_pred cceee
Confidence 87643
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.94 E-value=1.6e-25 Score=164.26 Aligned_cols=155 Identities=12% Similarity=0.162 Sum_probs=118.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeec-CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCc----------
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF---------- 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~---------- 69 (203)
|+|+|++++|++|+.||+|++||+.+++.+..+. .|...|.+++|+|++.++ +++.|+.+++|+....
T Consensus 18 l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~-~~~~d~~v~~~~~~~~~~~~~~~~~~ 96 (299)
T d1nr0a2 18 LSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF-TVSWDDHLKVVPAGGSGVDSSKAVAN 96 (299)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE-EEETTTEEEEECSSSSSSCTTSCCEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceee-cccceeeEEEeccCCccccccccccc
Confidence 5799999999999999999999999888777664 567778888887776543 3334556666654211
Q ss_pred -----------------------------------------------------------------------cccc-eeee
Q 028802 70 -----------------------------------------------------------------------KDCS-DRFV 77 (203)
Q Consensus 70 -----------------------------------------------------------------------~~~~-~~~~ 77 (203)
.... ....
T Consensus 97 ~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~ 176 (299)
T d1nr0a2 97 KLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTI 176 (299)
T ss_dssp ECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0110 1112
Q ss_pred cCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceee---eeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQ---PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
. |...+.++ |+|++.+|++++.++.|++||+.++..+. .+..|.. +|++++|+|++++|++++.|+.|++||++
T Consensus 177 ~-~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~s~~~~~l~sgs~dg~i~iwd~~ 254 (299)
T d1nr0a2 177 V-HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA-KVACVSWSPDNVRLATGSLDNSVIVWNMN 254 (299)
T ss_dssp E-CSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred c-cccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccceEEEcCCCEEEEEECC
Confidence 3 56778888 89999999999999999999998876553 3455644 89999999999999999999999999998
Q ss_pred CcccC
Q 028802 154 DILKG 158 (203)
Q Consensus 154 ~~~~~ 158 (203)
+....
T Consensus 255 ~~~~~ 259 (299)
T d1nr0a2 255 KPSDH 259 (299)
T ss_dssp CTTSC
T ss_pred CCCcc
Confidence 76543
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.94 E-value=1.1e-25 Score=170.46 Aligned_cols=156 Identities=16% Similarity=0.113 Sum_probs=129.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeE--EEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc---cee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC---SDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~---~~~ 75 (203)
|+|+|++++|++++.|++|+||++.++.. ...+..|...|.+++|+|+++.|++++.++.+++|++...... ...
T Consensus 57 l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~ 136 (371)
T d1k8kc_ 57 VDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI 136 (371)
T ss_dssp EEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEE
T ss_pred EEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeeccccccccccc
Confidence 57999999999999999999999987654 4455678889999999999999999999999999998643221 222
Q ss_pred eecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC------------------ceeeeeccCCCcceEEEEEeCCCC
Q 028802 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN------------------RIIQPIAEHSEYPIESLALSHDRK 136 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~------------------~~~~~~~~~~~~~i~~~~~~~~~~ 136 (203)
... +...+.++ |+|++++|++++.|+.|++|++... ..+.....|.. .|.+++|+|+++
T Consensus 137 ~~~-~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~ 214 (371)
T d1k8kc_ 137 KKP-IRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-WVHGVCFSANGS 214 (371)
T ss_dssp CTT-CCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-CEEEEEECSSSS
T ss_pred ccc-cccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccC-cEEEEEeecccc
Confidence 344 67889999 9999999999999999999997542 23444556644 799999999999
Q ss_pred eEEEEeCCCcEEEEeCCCcccC
Q 028802 137 FLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 137 ~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
+|++++.|+.|++||+.++.+.
T Consensus 215 ~l~s~~~d~~i~iwd~~~~~~~ 236 (371)
T d1k8kc_ 215 RVAWVSHDSTVCLADADKKMAV 236 (371)
T ss_dssp EEEEEETTTEEEEEEGGGTTEE
T ss_pred cccccccCCcceEEeeecccce
Confidence 9999999999999999876543
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=4e-25 Score=167.26 Aligned_cols=149 Identities=17% Similarity=0.288 Sum_probs=126.1
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEee-------cCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcc-----
Q 028802 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRS-------EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK----- 70 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~-------~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~----- 70 (203)
+.+++++|++++.|+.|++|+..++.....+ .+|...|.+++|+|++.+|++++.|+.|++||+....
T Consensus 213 ~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 292 (388)
T d1erja_ 213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS 292 (388)
T ss_dssp CSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------
T ss_pred cCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccc
Confidence 3457899999999999999999987665544 3577899999999999999999999999999986432
Q ss_pred ------ccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEE------eCCCCe
Q 028802 71 ------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLAL------SHDRKF 137 (203)
Q Consensus 71 ------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~------~~~~~~ 137 (203)
........ |...+.++ |+|++++|++|+.||.|++||+++++++.++.+|.. .|.++++ +|++.+
T Consensus 293 ~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~-~V~~~~~~~~~~~spd~~~ 370 (388)
T d1erja_ 293 KTPNSGTCEVTYIG-HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN-SVISVAVANGSSLGPEYNV 370 (388)
T ss_dssp ------CEEEEEEC-CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEECSSCTTCTTCEE
T ss_pred ccccccceeeeccc-ccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCC-CEEEEEEecCcccCCCCCE
Confidence 12223445 77889999 999999999999999999999999999999999965 8998874 678999
Q ss_pred EEEEeCCCcEEEEeCC
Q 028802 138 LGSISHDSMLKLWDLD 153 (203)
Q Consensus 138 l~~~~~d~~i~iwd~~ 153 (203)
|++++.||.|+||+++
T Consensus 371 l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 371 FATGSGDCKARIWKYK 386 (388)
T ss_dssp EEEEETTSEEEEEEEE
T ss_pred EEEEeCCCEEEEEeee
Confidence 9999999999999985
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.93 E-value=7.8e-25 Score=160.13 Aligned_cols=155 Identities=14% Similarity=0.270 Sum_probs=141.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
|+|+|++++|++|+.||+|+|||+.+++.+..+.+|...|.+++|+|++.+++++..++.+.+|+... ......+.. +
T Consensus 23 l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~ 100 (317)
T d1vyhc1 23 VIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG-FECIRTMHG-H 100 (317)
T ss_dssp EEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS-SCEEECCCC-C
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccc-ccccccccc-c
Confidence 57999999999999999999999999999999999999999999999999999999999999999864 455556666 7
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
...+.++ ++|++..+++++.|+.+++||+++++.+..+..|.. .+.+++|+|++.+|++++.|+.|++|++.+....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~ 178 (317)
T d1vyhc1 101 DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE-WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 178 (317)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred cccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCC-cceeeecccCCCEEEEEeCCCeEEEEeeccceee
Confidence 8888888 899999999999999999999999999999998855 7999999999999999999999999999887643
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.93 E-value=1.1e-24 Score=159.62 Aligned_cols=151 Identities=20% Similarity=0.236 Sum_probs=123.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEE-eecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccc--cceeee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT-RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD--CSDRFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~--~~~~~~ 77 (203)
++|+|++++|++|+.|+.|++||+.++.... ....|...|.+++|+|++.+|++++.++.|++||+..... ....+.
T Consensus 142 ~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~ 221 (299)
T d1nr0a2 142 VALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWT 221 (299)
T ss_dssp EEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4689999999999999999999998876543 3446788999999999999999999999999999875322 234456
Q ss_pred cCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCcee--eeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028802 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRII--QPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
. |...|.++ |+|++++|++++.||.|++||++++... .....|....+.++.| +++++|++++.|+.|++||+.
T Consensus 222 ~-h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 222 F-HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp C-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred c-cccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence 6 78899999 9999999999999999999999876433 3333443435666655 567899999999999999984
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=5.3e-24 Score=162.31 Aligned_cols=137 Identities=14% Similarity=0.183 Sum_probs=112.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEee------cCCcccEEEEEEeeCCCEEEEecCCC---eEEEEEcCCccc
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRS------EFSEEELTSVVLMKNGRKVVCGSQSG---TVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~------~~~~~~i~~l~~~~~~~~l~~~~~d~---~i~v~d~~~~~~ 71 (203)
++|+|++ +|++|+.|++|+|||+.+++.+..+ .+|..+|.+++|+|++++|++++.|+ .|++||+.. +.
T Consensus 190 v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~-g~ 267 (393)
T d1sq9a_ 190 VDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF-GE 267 (393)
T ss_dssp EEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT-CC
T ss_pred EEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeeccccc-ce
Confidence 4688987 8899999999999999998776544 46888999999999999999999886 489999975 34
Q ss_pred cceee-------------ecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceE----EEEEeC
Q 028802 72 CSDRF-------------VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIE----SLALSH 133 (203)
Q Consensus 72 ~~~~~-------------~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~----~~~~~~ 133 (203)
.+..+ .+ |...|+++ |+|++++|++++.|+.|++||+.+++++.++.+|.. .|. .++|+|
T Consensus 268 ~~~~l~~~~~~~~~~~~~~g-H~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~-~v~~~~~~~~~~~ 345 (393)
T d1sq9a_ 268 RIGSLSVPTHSSQASLGEFA-HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCD-DIEIEEDILAVDE 345 (393)
T ss_dssp EEEEECBC--------CCBS-BSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGG-GCSSGGGCCCBCT
T ss_pred eeeeeccccccccceeeeec-ccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCC-cccCCccEEEECC
Confidence 33333 46 88899999 999999999999999999999999999999998854 443 356677
Q ss_pred CCCeEEEE
Q 028802 134 DRKFLGSI 141 (203)
Q Consensus 134 ~~~~l~~~ 141 (203)
++..++++
T Consensus 346 ~~~~~~~~ 353 (393)
T d1sq9a_ 346 HGDSLAEP 353 (393)
T ss_dssp TSCBCSSC
T ss_pred CCCEEEEc
Confidence 66665433
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=2.9e-24 Score=163.73 Aligned_cols=149 Identities=18% Similarity=0.232 Sum_probs=119.3
Q ss_pred CCEEEEEcCCCeEEEEEcCCC---------------e---EEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCC
Q 028802 7 AMKLLGTSGDGTLSVCNLRKN---------------T---VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY 68 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~~~~---------------~---~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~ 68 (203)
+.++++++.|+++++|++... . .......+...+.+++|+|++ +|++|+.|+.|++||+.+
T Consensus 136 ~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~ 214 (393)
T d1sq9a_ 136 SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST 214 (393)
T ss_dssp CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT
T ss_pred ccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecc
Confidence 467899999999999997421 0 111222345668899999987 889999999999999975
Q ss_pred ccccce------eeecCCCCceeEE-EeeCCCEEEEEcCCC---cEEEEEccCCceeeeec-------------cCCCcc
Q 028802 69 FKDCSD------RFVGLSPNSVDAL-LKLDEDRVITGSENG---LISLVGILPNRIIQPIA-------------EHSEYP 125 (203)
Q Consensus 69 ~~~~~~------~~~~~~~~~v~~~-~~~~~~~l~~~~~dg---~v~v~d~~~~~~~~~~~-------------~~~~~~ 125 (203)
. .++. .+.+ |..+|.++ |+|++++|++|+.|+ .|++||+.+++.+..+. +|.. .
T Consensus 215 ~-~~~~~~~~~~~l~~-h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~-~ 291 (393)
T d1sq9a_ 215 L-RPLYNFESQHSMIN-NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS-W 291 (393)
T ss_dssp T-EEEEEEECCC---C-CCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS-C
T ss_pred c-cccccccccccccc-ccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccC-c
Confidence 3 3332 3456 78899999 999999999999886 48999999988777664 6755 8
Q ss_pred eEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028802 126 IESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 126 i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
|++++|+|++++|++++.|++|++||+.++....
T Consensus 292 V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~ 325 (393)
T d1sq9a_ 292 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERIT 325 (393)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred eeeeccCCCCCeeEEECCCCEEEEEECCCCCEEE
Confidence 9999999999999999999999999999986543
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=1.7e-23 Score=155.72 Aligned_cols=155 Identities=14% Similarity=0.185 Sum_probs=129.1
Q ss_pred CcccccCCEEEEEc--CCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCE-EEEecCCCeEEEEEcCCccccce---
Q 028802 1 MTFAADAMKLLGTS--GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRK-VVCGSQSGTVLLYSWGYFKDCSD--- 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~-l~~~~~d~~i~v~d~~~~~~~~~--- 74 (203)
|+|+|++++|++++ .++.+.+|+..+++.+..+.+|...|.+++|+|++.+ +++++.|+.+++||.... +...
T Consensus 121 v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~-~~~~~~~ 199 (325)
T d1pgua1 121 ISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF-KFSASDR 199 (325)
T ss_dssp EEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB-EEEEEEC
T ss_pred EEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeeccccccccccccc-ccceecc
Confidence 47899999987765 4678999999999999999999999999999998865 678999999999998643 2222
Q ss_pred eeecCCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEe---CCCCeEEEEeCCCcEEE
Q 028802 75 RFVGLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALS---HDRKFLGSISHDSMLKL 149 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~-~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~l~~~~~d~~i~i 149 (203)
.... +...+.++ |+|+ +.++++++.|+.|++||+++++.+..+.+|.. ++..+.|+ |++++|++++.|+.|+|
T Consensus 200 ~~~~-~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~-~v~~~~~s~~~~dg~~l~s~s~D~~i~i 277 (325)
T d1pgua1 200 THHK-QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQE-PVQGGIFALSWLDSQKFATVGADATIRV 277 (325)
T ss_dssp SSSC-TTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTB-CCCSCEEEEEESSSSEEEEEETTSEEEE
T ss_pred cccC-CCCccEEeeeccccceeccccccccceeeeeecccccccccccccc-ccccceeeeeccCCCEEEEEeCCCeEEE
Confidence 2334 66779999 9996 68899999999999999999999999988854 56555554 78999999999999999
Q ss_pred EeCCCcccC
Q 028802 150 WDLDDILKG 158 (203)
Q Consensus 150 wd~~~~~~~ 158 (203)
||+++++..
T Consensus 278 wd~~~~~~~ 286 (325)
T d1pgua1 278 WDVTTSKCV 286 (325)
T ss_dssp EETTTTEEE
T ss_pred EECCCCCEE
Confidence 999887654
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=3.1e-23 Score=151.17 Aligned_cols=148 Identities=19% Similarity=0.241 Sum_probs=121.9
Q ss_pred cccccCCEEEEEcCC-CeEEEEEcCCCeEEEeec-CCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 2 TFAADAMKLLGTSGD-GTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d-~~i~v~d~~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
+++|++..+++++.+ +.+++|++........+. .+...+.+++|+|++.+|++++.+|.|++||+.........+..
T Consensus 125 ~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~- 203 (287)
T d1pgua2 125 AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF- 203 (287)
T ss_dssp EEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCC-
T ss_pred eeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccc-
Confidence 467788888887766 479999998766555554 46788999999999999999999999999999754333445666
Q ss_pred CCCceeEE-EeeC----------CCEEEEEcCCCcEEEEEccC-CceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcE
Q 028802 80 SPNSVDAL-LKLD----------EDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSML 147 (203)
Q Consensus 80 ~~~~v~~~-~~~~----------~~~l~~~~~dg~v~v~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 147 (203)
|...+.++ |+|. +.++++|+.|+.|++||++. ++.+..+.+|.. .|++++|+|++ .|++++.|+.|
T Consensus 204 h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~-~V~~v~~~~~~-~l~s~g~D~~v 281 (287)
T d1pgua2 204 RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD-GVNNLLWETPS-TLVSSGADACI 281 (287)
T ss_dssp CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTT-CEEEEEEEETT-EEEEEETTSCE
T ss_pred cccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCC-CeEEEEECCCC-EEEEEECCCeE
Confidence 88889998 8764 46899999999999999876 556777788865 89999999986 68899999999
Q ss_pred EEEeC
Q 028802 148 KLWDL 152 (203)
Q Consensus 148 ~iwd~ 152 (203)
++|++
T Consensus 282 ~iW~i 286 (287)
T d1pgua2 282 KRWNV 286 (287)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=5.7e-23 Score=155.30 Aligned_cols=155 Identities=18% Similarity=0.265 Sum_probs=127.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
|+|+|++++|++|+.||.|++|+...++.+..+.+|...|.++.|++++..+++++.++.+++||... ......... +
T Consensus 127 l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~-~ 204 (388)
T d1erja_ 127 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT-GQCSLTLSI-E 204 (388)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEEEC-S
T ss_pred EEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccc-ccccccccc-c
Confidence 47999999999999999999999999999999999999999999999999999999999999999975 344444444 4
Q ss_pred CCceeEEE-eeCCCEEEEEcCCCcEEEEEccCCceeeeec-------cCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028802 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIA-------EHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
...+...+ .+++.+|++++.|+.|++|++.++..+..+. +|.. .|.+++|+|++++|++++.|+.|++||+
T Consensus 205 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~s~~~~~l~s~~~d~~i~iwd~ 283 (388)
T d1erja_ 205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD-SVYSVVFTRDGQSVVSGSLDRSVKLWNL 283 (388)
T ss_dssp SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSS-CEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred cccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCC-CEEEEEECCCCCEEEEEECCCcEEEEec
Confidence 44444445 5588999999999999999999887765543 4533 7999999999999999999999999999
Q ss_pred CCcccC
Q 028802 153 DDILKG 158 (203)
Q Consensus 153 ~~~~~~ 158 (203)
++....
T Consensus 284 ~~~~~~ 289 (388)
T d1erja_ 284 QNANNK 289 (388)
T ss_dssp ------
T ss_pred cCCccc
Confidence 876543
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=1.5e-22 Score=150.23 Aligned_cols=152 Identities=16% Similarity=0.188 Sum_probs=122.1
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccc----------
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD---------- 71 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~---------- 71 (203)
++++++++|++|+.||+|+|||+.+++++.++.+|..+|.+++|+|+ .+|++++.|+.|++|++.....
T Consensus 18 c~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~ 96 (355)
T d1nexb2 18 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNST 96 (355)
T ss_dssp EEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSC
T ss_pred EEEECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccccccccccccccccc
Confidence 36778999999999999999999999999999999999999999985 5788888888888887643200
Q ss_pred ----------------------cc--------------------------------------------------------
Q 028802 72 ----------------------CS-------------------------------------------------------- 73 (203)
Q Consensus 72 ----------------------~~-------------------------------------------------------- 73 (203)
.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 176 (355)
T d1nexb2 97 VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVS 176 (355)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEE
T ss_pred ccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeee
Confidence 00
Q ss_pred ------------------eeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCC
Q 028802 74 ------------------DRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHD 134 (203)
Q Consensus 74 ------------------~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~ 134 (203)
..+.. +...+.++ ++|.+..+++++.|+.|++|+++++..+..+.+|.. .|.+++|+
T Consensus 177 ~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~-~v~~~~~~-- 252 (355)
T d1nexb2 177 GSYDNTLIVWDVAQMKCLYILSG-HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA-LVGLLRLS-- 252 (355)
T ss_dssp EETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSS-CCCEEEEC--
T ss_pred ecccceeeeeecccccceeeeec-cccccccccccccceeeecccccceEEeeeccccccccccccccc-cccccccc--
Confidence 00001 12233445 688889999999999999999999999999999965 89998886
Q ss_pred CCeEEEEeCCCcEEEEeCCCcccC
Q 028802 135 RKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 135 ~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
+++|++++.||.|++||+.+..+.
T Consensus 253 ~~~l~~~~~dg~i~iwd~~~~~~~ 276 (355)
T d1nexb2 253 DKFLVSAAADGSIRGWDANDYSRK 276 (355)
T ss_dssp SSEEEEECTTSEEEEEETTTCCEE
T ss_pred cceeeeeeccccccccccccccee
Confidence 469999999999999999877543
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=9.5e-23 Score=150.52 Aligned_cols=148 Identities=17% Similarity=0.250 Sum_probs=120.8
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecC--
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL-- 79 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-- 79 (203)
.+++++.+|++++.||.|++||+..++.+..+..|...+.++.++ +++|++++.|+.|++||+.. ......+...
T Consensus 182 ~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~-~~~~~~~~~~~~ 258 (342)
T d2ovrb2 182 SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKT-GQCLQTLQGPNK 258 (342)
T ss_dssp EEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTT-CCEEEEECSTTS
T ss_pred cccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCCEEEEEeccc-ccccccccccce
Confidence 356788999999999999999999999999999999999887765 57999999999999999975 3444444430
Q ss_pred CCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeec-----cCCCcceEEEEEeCCCCeEEEEeCCCc----EEEE
Q 028802 80 SPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIA-----EHSEYPIESLALSHDRKFLGSISHDSM----LKLW 150 (203)
Q Consensus 80 ~~~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~d~~----i~iw 150 (203)
|...+.+ +.++++++++++.||.|++||+++++.+..+. +|. ..|++++|+|++.+|++|+.||+ |++|
T Consensus 259 ~~~~~~~-~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~-~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~ 336 (342)
T d2ovrb2 259 HQSAVTC-LQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSG-GVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336 (342)
T ss_dssp CSSCEEE-EEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGT-CEEEEEEECSSEEEEEEECSSSSSCCEEEEE
T ss_pred eeeceee-cccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCC-CCEEEEEECCCCCEEEEEeCCCCCeeEEEEE
Confidence 2233333 45677899999999999999999999887764 342 37999999999999999998885 9999
Q ss_pred eCCC
Q 028802 151 DLDD 154 (203)
Q Consensus 151 d~~~ 154 (203)
|+..
T Consensus 337 Df~~ 340 (342)
T d2ovrb2 337 DFDV 340 (342)
T ss_dssp ECCC
T ss_pred eCCC
Confidence 9863
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=7e-23 Score=152.41 Aligned_cols=150 Identities=11% Similarity=0.106 Sum_probs=119.5
Q ss_pred CcccccCCE-EEEEcCCCeEEEEEcCCCeEEEee---cCCcccEEEEEEeeC-CCEEEEecCCCeEEEEEcCCcccccee
Q 028802 1 MTFAADAMK-LLGTSGDGTLSVCNLRKNTVQTRS---EFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 1 l~~sp~~~~-l~~~~~d~~i~v~d~~~~~~~~~~---~~~~~~i~~l~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~ 75 (203)
++|+|++.+ +++++.|+.|++|+....+....+ ..|...|.+++|+|+ +.+|++++.|+.|++||+.+ +..+..
T Consensus 165 ~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~-~~~~~~ 243 (325)
T d1pgua1 165 CHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS-GEFLKY 243 (325)
T ss_dssp EEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT-CCEEEE
T ss_pred ccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecc-cccccc
Confidence 468898875 678899999999999887665544 356778999999996 68899999999999999975 567777
Q ss_pred eecCCCCceeEE-E---eeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCc-ceEEEEEeCC-CCeEEEEeCCCcEEE
Q 028802 76 FVGLSPNSVDAL-L---KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY-PIESLALSHD-RKFLGSISHDSMLKL 149 (203)
Q Consensus 76 ~~~~~~~~v~~~-~---~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~-~i~~~~~~~~-~~~l~~~~~d~~i~i 149 (203)
+.. |..++..+ | .|++.+|++++.|+.|+|||+++++++..+..+... .+..+++.+. +.+|++++.||.|++
T Consensus 244 l~~-~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~v 322 (325)
T d1pgua1 244 IED-DQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 322 (325)
T ss_dssp CCB-TTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEE
T ss_pred ccc-cccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEE
Confidence 877 77776554 4 378999999999999999999999999888766431 2334444432 347899999999999
Q ss_pred EeC
Q 028802 150 WDL 152 (203)
Q Consensus 150 wd~ 152 (203)
||+
T Consensus 323 wdl 325 (325)
T d1pgua1 323 YEL 325 (325)
T ss_dssp EET
T ss_pred EEC
Confidence 996
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=2.6e-22 Score=148.12 Aligned_cols=63 Identities=16% Similarity=0.127 Sum_probs=53.5
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEc
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSW 66 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~ 66 (203)
+++++|++|++|+.||+|+|||+.+++++.++.+|...|.+++|+|+ +|++++.|+.+++|+.
T Consensus 22 ~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~ 84 (342)
T d2ovrb2 22 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNA 84 (342)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEET
T ss_pred EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceeccccccccc
Confidence 36789999999999999999999999999999999999999998764 6667766666666654
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.88 E-value=3.5e-22 Score=149.12 Aligned_cols=150 Identities=11% Similarity=0.076 Sum_probs=126.4
Q ss_pred cccc-cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCC--eEEEEEcCCccccceeeec
Q 028802 2 TFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSG--TVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~--~i~v~d~~~~~~~~~~~~~ 78 (203)
.||| ||+++|+++. |.|++|++.++..++. .|...|.+++|+|||++|++++.+. .|++||+.. .....+..
T Consensus 9 ~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~--~~~~~~~~ 83 (360)
T d1k32a3 9 DFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT--GKAEKFEE 83 (360)
T ss_dssp EEEECGGGCEEEEET-TEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTT--CCEEECCC
T ss_pred cccCCCCCEEEEEEC-CeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCC--CcEEEeeC
Confidence 5899 9999999876 7999999998877653 5888999999999999998776553 799999974 34556677
Q ss_pred CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe----------CCCcE
Q 028802 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS----------HDSML 147 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~d~~i 147 (203)
+...+.++ |+|++++|++++.++.+++|++.+++....+..+.. .+.+++|+|+|++|+.+. .++.+
T Consensus 84 -~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~ 161 (360)
T d1k32a3 84 -NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREA-MITDFTISDNSRFIAYGFPLKHGETDGYVMQAI 161 (360)
T ss_dssp -CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS-CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEE
T ss_pred -CCceEEeeeecccccccceeccccccccccccccceeeeeecccc-cccchhhccceeeeeeeccccccceeeccccce
Confidence 88999999 999999999999999999999999998888887754 788999999999998654 34568
Q ss_pred EEEeCCCcccC
Q 028802 148 KLWDLDDILKG 158 (203)
Q Consensus 148 ~iwd~~~~~~~ 158 (203)
++|++.+....
T Consensus 162 ~v~d~~~~~~~ 172 (360)
T d1k32a3 162 HVYDMEGRKIF 172 (360)
T ss_dssp EEEETTTTEEE
T ss_pred eeeccccCcee
Confidence 99999887543
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=6.1e-21 Score=137.80 Aligned_cols=149 Identities=16% Similarity=0.251 Sum_probs=115.6
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee-----
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF----- 76 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----- 76 (203)
++++++++|++|+.||+|+|||+.+++++.++.+|...|.+++| ++++|++++.|+.+++|++.... .....
T Consensus 20 c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~-~~~~~~~~~~ 96 (293)
T d1p22a2 20 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE-MLNTLIHHCE 96 (293)
T ss_dssp EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC-EEEEECCCCS
T ss_pred EEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccccc-cccccccccc
Confidence 47889999999999999999999999999999999999998876 67899999999999999986431 11000
Q ss_pred --------------------------------------ecCCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeee
Q 028802 77 --------------------------------------VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPI 118 (203)
Q Consensus 77 --------------------------------------~~~~~~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~ 118 (203)
.. +...+.. ..+....+++++.|+.|++||+++++.+..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~-~~~~~~~~~~~s~d~~i~~~d~~~~~~~~~~ 174 (293)
T d1p22a2 97 AVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVG-HRAAVNV-VDFDDKYIVSASGDRTIKVWNTSTCEFVRTL 174 (293)
T ss_dssp CEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECC-CSSCEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ccccccccccceeecccccceeEeeccccccccccccccc-ccccccc-ceecccccccccCCCceeeecCCCCcEEEEE
Confidence 01 1222222 2334567788888999999999999888888
Q ss_pred ccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 119 AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 119 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.++.. .+..+.+ ++.++++++.|+.|++||+++....
T Consensus 175 ~~~~~-~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~ 211 (293)
T d1p22a2 175 NGHKR-GIACLQY--RDRLVVSGSSDNTIRLWDIECGACL 211 (293)
T ss_dssp ECCSS-CEEEEEE--ETTEEEEEETTSCEEEEETTTCCEE
T ss_pred ccccc-ccccccC--CCCeEEEecCCCEEEEEecccceee
Confidence 87744 6766655 4568999999999999998876544
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=1.7e-21 Score=144.36 Aligned_cols=142 Identities=12% Similarity=0.234 Sum_probs=116.2
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCC
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 81 (203)
.|+|+++++++++.|+.|++|++.++..+..+.+|...|.+++++ +++|++++.||.|++||+... ...+.. |.
T Consensus 208 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~---~~~~~~-~~ 281 (355)
T d1nexb2 208 IYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDY---SRKFSY-HH 281 (355)
T ss_dssp EEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTC---CEEEEE-EC
T ss_pred cccccceeeecccccceEEeeeccccccccccccccccccccccc--cceeeeeeccccccccccccc---ceeccc-cc
Confidence 578999999999999999999999999999999999999999886 579999999999999999743 234455 56
Q ss_pred CceeEE--EeeCCCEEEEEcCCCcEEEEEccCCceee-eeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028802 82 NSVDAL--LKLDEDRVITGSENGLISLVGILPNRIIQ-PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 82 ~~v~~~--~~~~~~~l~~~~~dg~v~v~d~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
..+.++ +++++.++++| .|+.|++||+++++++. .+.+|.. +|.+++|+|+ ..+++++.||.++||.+
T Consensus 282 ~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~-~V~~v~~~~~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 282 TNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDAD-QIWSVNFKGK-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp TTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCS-EEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred CCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEecCCCC-CEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence 666665 56777766655 58999999999999875 4566754 8999999987 57778889998766643
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.85 E-value=1.4e-20 Score=138.50 Aligned_cols=156 Identities=15% Similarity=0.116 Sum_probs=116.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeE---EEeecCCcccEEEEEEeeCC-CEEEEecCCCeEEEEEcCCccccceee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV---QTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~i~~l~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~ 76 (203)
|+|+|++++||+|+.||+|+|||+.++.. +.....|..+|.+++|+|++ .+|++|+.|+.|++|++... ......
T Consensus 17 l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~-~~~~~~ 95 (342)
T d1yfqa_ 17 IKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGS-PSFQAL 95 (342)
T ss_dssp EEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSS-SSEEEC
T ss_pred EEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccc-cccccc
Confidence 58999999999999999999999976432 22334688999999999965 57889999999999999754 333333
Q ss_pred ecCCCCc-eeEE-EeeCCCEEEEEcCCCcEEEEEccCCcee----eeeccCC-CcceEEEEEeCCCCeEEEEeCCCcEEE
Q 028802 77 VGLSPNS-VDAL-LKLDEDRVITGSENGLISLVGILPNRII----QPIAEHS-EYPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 77 ~~~~~~~-v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~----~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i~i 149 (203)
.. +... .... +.++...+++++.++.+++||++.+... .....+. ......+.+.+.+..+++++.|+.|++
T Consensus 96 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 174 (342)
T d1yfqa_ 96 TN-NEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQW 174 (342)
T ss_dssp BS-CCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEE
T ss_pred cc-cccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEE
Confidence 33 3333 3333 6788899999999999999998754322 2222221 113456678889999999999999999
Q ss_pred EeCCCcccC
Q 028802 150 WDLDDILKG 158 (203)
Q Consensus 150 wd~~~~~~~ 158 (203)
|++++....
T Consensus 175 ~~~~~~~~~ 183 (342)
T d1yfqa_ 175 FRLPLCEDD 183 (342)
T ss_dssp EESSCCTTC
T ss_pred EecccCccc
Confidence 999877644
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.85 E-value=2.2e-20 Score=139.24 Aligned_cols=151 Identities=12% Similarity=0.026 Sum_probs=124.6
Q ss_pred CcccccCCEEEEEcCC--CeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028802 1 MTFAADAMKLLGTSGD--GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d--~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 78 (203)
++|||||++|++++.+ ..|++||..+++.. .+..|...+.+++|+|++++|++++.++.+++|++.. ......+..
T Consensus 48 ~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~-~~~~~~~~~ 125 (360)
T d1k32a3 48 VRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET-GKPTVIERS 125 (360)
T ss_dssp EEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEEC
T ss_pred EEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccccccceeccccccccccccc-cceeeeeec
Confidence 4799999999876654 37999999887654 5677889999999999999999999999999999974 466666777
Q ss_pred CCCCceeEE-EeeCCCEEEEEc----------CCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcE
Q 028802 79 LSPNSVDAL-LKLDEDRVITGS----------ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSML 147 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~----------~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 147 (203)
+...+.++ |+|+|++|+.+. .++.+++|++.+++.......+ . .+..++|+|+|++|++++.++.+
T Consensus 126 -~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~-~-~~~~~~~spdg~~l~~~s~~~~~ 202 (360)
T d1k32a3 126 -REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTEN-S-HDYAPAFDADSKNLYYLSYRSLD 202 (360)
T ss_dssp -SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSS-S-BEEEEEECTTSCEEEEEESCCCC
T ss_pred -ccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccc-c-ccccccccCCCCEEEEEeCCCce
Confidence 77888888 999999998653 3456899999987766544433 3 68889999999999999999999
Q ss_pred EEEeCCCcc
Q 028802 148 KLWDLDDIL 156 (203)
Q Consensus 148 ~iwd~~~~~ 156 (203)
.+|+.....
T Consensus 203 ~~~d~~~~~ 211 (360)
T d1k32a3 203 PSPDRVVLN 211 (360)
T ss_dssp CEECSSSSC
T ss_pred Ecccccccc
Confidence 999976543
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=5e-19 Score=127.58 Aligned_cols=139 Identities=24% Similarity=0.389 Sum_probs=115.1
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCce
Q 028802 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSV 84 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v 84 (203)
+....+++++.|+.|++|++.+++.+..+.++...+..+.++ +..+++++.|+.|++||+.. ...+..+.. +...+
T Consensus 146 ~~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~-~~~~v 221 (293)
T d1p22a2 146 FDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIEC-GACLRVLEG-HEELV 221 (293)
T ss_dssp EETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT-CCEEEEECC-CSSCE
T ss_pred ecccccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEeccc-ceeeeeecc-cceee
Confidence 445678888999999999999999999999888888777664 67899999999999999975 456666666 66655
Q ss_pred eEEEeeCCCEEEEEcCCCcEEEEEccC---------CceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028802 85 DALLKLDEDRVITGSENGLISLVGILP---------NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 85 ~~~~~~~~~~l~~~~~dg~v~v~d~~~---------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 151 (203)
.. +.+++.+|++++.||.|++||+.. ..++..+.+|.. .|++++| ++.+|++++.|++|++||
T Consensus 222 ~~-~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~-~V~~v~~--d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 222 RC-IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG-RVFRLQF--DEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp EE-EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS-CCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred ee-ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCC-CEEEEEE--cCCEEEEEecCCEEEEeC
Confidence 44 577889999999999999999753 245677888865 8999988 467899999999999997
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.80 E-value=1.5e-19 Score=138.99 Aligned_cols=79 Identities=5% Similarity=-0.051 Sum_probs=58.9
Q ss_pred CCCceeEE-EeeCCCEEEE-------EcCCCcEEEEEccCCceeeeec---------cCCCcceEEEEEeCCCCeEEEE-
Q 028802 80 SPNSVDAL-LKLDEDRVIT-------GSENGLISLVGILPNRIIQPIA---------EHSEYPIESLALSHDRKFLGSI- 141 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~-------~~~dg~v~v~d~~~~~~~~~~~---------~~~~~~i~~~~~~~~~~~l~~~- 141 (203)
|...+..+ |+|++++|++ +..+++|+|||+.+++...++. .+.. .+.+++|+|||++++.+
T Consensus 302 ~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~-rv~~~~fSpDGk~i~vs~ 380 (426)
T d1hzua2 302 QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAK-RVVQPEYNKRGDEVWFSV 380 (426)
T ss_dssp SSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCC-CEEEEEECSSSSEEEEEE
T ss_pred CCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCc-cEEEEEECCCCCEEEEEE
Confidence 34456777 8999999985 4457889999999887655432 2322 68999999999987543
Q ss_pred ----eCCCcEEEEeCCCcccCC
Q 028802 142 ----SHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 142 ----~~d~~i~iwd~~~~~~~~ 159 (203)
+.++.|+|||.+|.+...
T Consensus 381 ~~~~~~~~~i~v~D~~T~k~~~ 402 (426)
T d1hzua2 381 WNGKNDSSALVVVDDKTLKLKA 402 (426)
T ss_dssp CCCTTSCCEEEEEETTTTEEEE
T ss_pred ecCCCCCCeEEEEECCCCeEEE
Confidence 257889999999987543
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.79 E-value=1.9e-17 Score=120.08 Aligned_cols=133 Identities=11% Similarity=0.121 Sum_probs=96.4
Q ss_pred eEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCC-CeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEE
Q 028802 18 TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS-GTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRV 95 (203)
Q Consensus 18 ~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d-~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l 95 (203)
.+.+|+..++..+..+..+ .. ..++++++..+++++.+ +.+++|++............ +...+.++ |+|++.+|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l 177 (287)
T d1pgua2 102 DLLILQSFTGDIIKSVRLN-SP--GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTP-LRAKPSYISISPSETYI 177 (287)
T ss_dssp EEEEEETTTCCEEEEEECS-SC--EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSC-CSSCEEEEEECTTSSEE
T ss_pred cceeeeccceeeeeecccc-ce--eeeeeccCcceeeeccccceeeeeeccccceeeeeeec-cCCceeEEEeccCcccc
Confidence 3444444444444444322 22 34567788888877776 47999998643323333334 67789999 99999999
Q ss_pred EEEcCCCcEEEEEccCCceee-eeccCCCcceEEEEEeCC----------CCeEEEEeCCCcEEEEeCCCc
Q 028802 96 ITGSENGLISLVGILPNRIIQ-PIAEHSEYPIESLALSHD----------RKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 96 ~~~~~dg~v~v~d~~~~~~~~-~~~~~~~~~i~~~~~~~~----------~~~l~~~~~d~~i~iwd~~~~ 155 (203)
++++.+|.|++||+.++.... .+..|.. +|.+++|+|. +.+|++++.|+.|++||+.+.
T Consensus 178 ~~g~~dg~i~i~d~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~ 247 (287)
T d1pgua2 178 AAGDVMGKILLYDLQSREVKTSRWAFRTS-KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 247 (287)
T ss_dssp EEEETTSCEEEEETTTTEEEECCSCCCSS-CEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred ccccccccccceeeccccccccccccccc-ccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCC
Confidence 999999999999999887654 4567754 8999999874 468999999999999998764
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.78 E-value=1.3e-17 Score=123.31 Aligned_cols=68 Identities=12% Similarity=0.112 Sum_probs=58.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC-CcccEEEEEEeeCCCEEE-EecCCCeEEEEEcCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-SEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGY 68 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~-~~~~d~~i~v~d~~~ 68 (203)
++|++++++|++++.+++|.+||+.+++++.++.. +...+.+++|+|||++++ ++..++.|++||+.+
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t 71 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT 71 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCcc
Confidence 58999999999999999999999999999888763 455678999999999875 556789999999854
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.76 E-value=9.8e-18 Score=122.95 Aligned_cols=128 Identities=9% Similarity=0.090 Sum_probs=103.6
Q ss_pred eEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccc--cceeeecCCCCceeEE-EeeC-CCEEEEEcCCCc
Q 028802 28 TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD--CSDRFVGLSPNSVDAL-LKLD-EDRVITGSENGL 103 (203)
Q Consensus 28 ~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~v~~~-~~~~-~~~l~~~~~dg~ 103 (203)
+.+...++|...|++|+|+|++++|++++.|++|++||+..... .+..... |..+|.++ |+|+ +.+|++|+.|+.
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~-h~~~V~~v~f~~~~~~~l~sg~~d~~ 80 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLR-YKHPLLCCNFIDNTDLQIYVGTVQGE 80 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEE-CSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecC-CCCCEEEEEEeCCCCCEEEEcccccc
Confidence 45677789999999999999999999999999999999965332 2233346 88999999 8886 457889999999
Q ss_pred EEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 104 ISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 104 v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
|++|++..+........+.........+.++...+++++.++.+++||+++..
T Consensus 81 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~ 133 (342)
T d1yfqa_ 81 ILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYG 133 (342)
T ss_dssp EEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHT
T ss_pred eeeeecccccccccccccccccccccccccccccccccccccccceeeccccc
Confidence 99999988777666655544345566677888999999999999999987654
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.75 E-value=2.7e-17 Score=126.57 Aligned_cols=146 Identities=10% Similarity=0.011 Sum_probs=113.6
Q ss_pred EEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccc-cceeee---cCCCCce
Q 028802 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD-CSDRFV---GLSPNSV 84 (203)
Q Consensus 9 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~---~~~~~~v 84 (203)
++++.+.+|+|.|||..+++++..+..+. .+..++|+|||++|++++.|+.+.+||+.+... ....+. . +.+.+
T Consensus 34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~-~~~~~ 111 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-ARSIE 111 (432)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-EEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCC-CCCeE
Confidence 45888999999999999999999998764 589999999999999999999999999975432 222222 2 33444
Q ss_pred eEE-EeeCCCEE-EEEcCCCcEEEEEccCCceeeeeccCC----------CcceEEEEEeCCCCeEE-EEeCCCcEEEEe
Q 028802 85 DAL-LKLDEDRV-ITGSENGLISLVGILPNRIIQPIAEHS----------EYPIESLALSHDRKFLG-SISHDSMLKLWD 151 (203)
Q Consensus 85 ~~~-~~~~~~~l-~~~~~dg~v~v~d~~~~~~~~~~~~~~----------~~~i~~~~~~~~~~~l~-~~~~d~~i~iwd 151 (203)
.+. |+|||+++ +++..++.|++||..+++++..+..+. ......+.++|++..++ +...++.|.+|+
T Consensus 112 ~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d 191 (432)
T d1qksa2 112 TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD 191 (432)
T ss_dssp ECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred EecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEE
Confidence 555 68899986 567779999999999998887765431 22466789999998764 555778999999
Q ss_pred CCCcc
Q 028802 152 LDDIL 156 (203)
Q Consensus 152 ~~~~~ 156 (203)
..+..
T Consensus 192 ~~~~~ 196 (432)
T d1qksa2 192 YTDLN 196 (432)
T ss_dssp TTCSS
T ss_pred ccCCC
Confidence 87654
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.75 E-value=1.6e-17 Score=127.93 Aligned_cols=156 Identities=12% Similarity=0.022 Sum_probs=113.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe--EEEee---cCCcccEEEEEEeeCCCEE-EEecCCCeEEEEEcCCccccce
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRS---EFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~--~~~~~---~~~~~~i~~l~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~ 74 (203)
++|||||++|++++.|+.|++||+.+++ ....+ ..|...+.++.|+|||++| +++..++.+.+||..+ +.++.
T Consensus 67 v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t-~~~~~ 145 (432)
T d1qksa2 67 SRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET-LEPKK 145 (432)
T ss_dssp EEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT-CCEEE
T ss_pred EEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcc-cccee
Confidence 4799999999999999999999998764 33333 3445556667788899986 5677799999999975 45544
Q ss_pred eeec----------CCCCceeEE-EeeCCCEEE-EEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe
Q 028802 75 RFVG----------LSPNSVDAL-LKLDEDRVI-TGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 75 ~~~~----------~~~~~v~~~-~~~~~~~l~-~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 142 (203)
.+.. ........+ ++|++..++ +...++.|.+|+..+.+.......+.+..+..++|+|+|+++++++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~ 225 (432)
T d1qksa2 146 IQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAA 225 (432)
T ss_dssp EEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEE
T ss_pred eeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEec
Confidence 4432 022334455 789888765 4556789999998877655443323233688999999999887776
Q ss_pred -CCCcEEEEeCCCccc
Q 028802 143 -HDSMLKLWDLDDILK 157 (203)
Q Consensus 143 -~d~~i~iwd~~~~~~ 157 (203)
.+..+.++|..+...
T Consensus 226 ~~~~~v~v~d~~~~~~ 241 (432)
T d1qksa2 226 NARNKLVVIDTKEGKL 241 (432)
T ss_dssp GGGTEEEEEETTTTEE
T ss_pred cccceEEEeecccceE
Confidence 566899999887654
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.71 E-value=3.5e-16 Score=114.99 Aligned_cols=68 Identities=13% Similarity=0.095 Sum_probs=55.3
Q ss_pred EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028802 88 LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 88 ~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
++|++.+++.+ ++.|++||+.+++.+..+... . .+.+++|+|||++|++++.++.|++||+.+++...
T Consensus 248 ~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~-~-~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~ 315 (337)
T d1pbyb_ 248 VNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-H-SYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKG 315 (337)
T ss_dssp ECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-S-CCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEE
T ss_pred ecccceEEEEc--cccEEEEECCCCcEEEEEcCC-C-CEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEE
Confidence 45555555544 478999999999998887654 3 68899999999999999999999999999876543
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.70 E-value=1e-16 Score=122.94 Aligned_cols=145 Identities=8% Similarity=0.023 Sum_probs=106.3
Q ss_pred EEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc-ceeee---cCCCCce
Q 028802 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC-SDRFV---GLSPNSV 84 (203)
Q Consensus 9 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~-~~~~~---~~~~~~v 84 (203)
++++.+.||+|+|||+.+++.+.++..+. .+..++|+|||++|++++.|+.+++||+.+.... ...+. . +.+.+
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~-~~~~~ 111 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIE-ARSVE 111 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSE-EEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCC-CcceE
Confidence 56778889999999999999999998764 5899999999999999999999999999754321 12222 2 33445
Q ss_pred eEE-EeeCCCEEEEEc-CCCcEEEEEccCCceeeeeccCCC----------cceEEEEEeCCCCeEEEEe-CCCcEEEEe
Q 028802 85 DAL-LKLDEDRVITGS-ENGLISLVGILPNRIIQPIAEHSE----------YPIESLALSHDRKFLGSIS-HDSMLKLWD 151 (203)
Q Consensus 85 ~~~-~~~~~~~l~~~~-~dg~v~v~d~~~~~~~~~~~~~~~----------~~i~~~~~~~~~~~l~~~~-~d~~i~iwd 151 (203)
.++ |+|+|+++++++ .++.+.+||..++.++..+..+.. .....+.+++++..++... ..+.+.+++
T Consensus 112 ~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~ 191 (426)
T d1hzua2 112 SSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVN 191 (426)
T ss_dssp ECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred EeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEE
Confidence 555 789999876554 689999999999888776654421 1345567777777665544 345566665
Q ss_pred CCCc
Q 028802 152 LDDI 155 (203)
Q Consensus 152 ~~~~ 155 (203)
....
T Consensus 192 ~~~~ 195 (426)
T d1hzua2 192 YKDI 195 (426)
T ss_dssp CSSS
T ss_pred eccc
Confidence 5443
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.69 E-value=5.7e-16 Score=113.86 Aligned_cols=145 Identities=14% Similarity=0.047 Sum_probs=114.4
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCC--cccEEEEEEeeCCCEEE-EecCCCeEEEEEcCCccccceeeecCCC---
Q 028802 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFS--EEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFVGLSP--- 81 (203)
Q Consensus 8 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~~~i~~l~~~~~~~~l~-~~~~d~~i~v~d~~~~~~~~~~~~~~~~--- 81 (203)
+++++++.|++|+|||+.+++.+..+..+ ...+.+++|+|||++++ +++.++.|.+||+.+ ++.+..+.. +.
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t-~~~~~~~~~-~~~~~ 79 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT-GETLGRIDL-STPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT-CCEEEEEEC-CBTTE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCC-CcEEEEEec-CCCcc
Confidence 47999999999999999999998888643 34578899999999874 567799999999986 455555543 32
Q ss_pred --CceeEE-EeeCCCEEEEEcC------------CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCc
Q 028802 82 --NSVDAL-LKLDEDRVITGSE------------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSM 146 (203)
Q Consensus 82 --~~v~~~-~~~~~~~l~~~~~------------dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 146 (203)
..+..+ ++|++++++++.. +..+.+||..+++.+..+..+ . .+..++|+|+|+++++++. .
T Consensus 80 ~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~-~~~~~~~s~dg~~l~~~~~--~ 155 (337)
T d1pbyb_ 80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-R-QITMLAWARDGSKLYGLGR--D 155 (337)
T ss_dssp EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-S-SCCCEEECTTSSCEEEESS--S
T ss_pred cccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc-C-CceEEEEcCCCCEEEEEcC--C
Confidence 223456 8999999987763 567889999999888888765 3 5788999999999998864 5
Q ss_pred EEEEeCCCcccC
Q 028802 147 LKLWDLDDILKG 158 (203)
Q Consensus 147 i~iwd~~~~~~~ 158 (203)
+.+||+.++...
T Consensus 156 ~~~~d~~~~~~~ 167 (337)
T d1pbyb_ 156 LHVMDPEAGTLV 167 (337)
T ss_dssp EEEEETTTTEEE
T ss_pred cceeeeecCcEE
Confidence 788998876543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.68 E-value=4.7e-15 Score=107.39 Aligned_cols=152 Identities=15% Similarity=0.158 Sum_probs=116.2
Q ss_pred CcccccCCEEE-EEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCC-CeEEEEEcCCccccceeeec
Q 028802 1 MTFAADAMKLL-GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS-GTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~-~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d-~~i~v~d~~~~~~~~~~~~~ 78 (203)
++|+|+++.++ ++..++.+.+|+..+......+..+ ..+..++++|++..+++++.+ +.+.+|+... ......+..
T Consensus 121 ~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 198 (301)
T d1l0qa2 121 LALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVT-NSVIDTVKV 198 (301)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEEC
T ss_pred EEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEeeccccceeeecccccccccccccc-eeeeecccc
Confidence 36889998775 5566889999999999888777654 457889999999988877665 5666777653 344444443
Q ss_pred CCCCceeEE-EeeCCCEEEEEcC---CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeE-EEEeCCCcEEEEeCC
Q 028802 79 LSPNSVDAL-LKLDEDRVITGSE---NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFL-GSISHDSMLKLWDLD 153 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~---dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~iwd~~ 153 (203)
...+..+ +++++..+++++. ++.|++||+.+++.+..+..+ . .+.+++|+|||++| ++++.++.|++||+.
T Consensus 199 --~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~-~~~~va~spdg~~l~va~~~~~~i~v~D~~ 274 (301)
T d1l0qa2 199 --EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-P-DPAGIAVTPDGKKVYVALSFCNTVSVIDTA 274 (301)
T ss_dssp --SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-S-SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred --cCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCC-C-CEEEEEEeCCCCEEEEEECCCCeEEEEECC
Confidence 3445555 8999998876643 467999999999988887765 3 58999999999987 566689999999999
Q ss_pred CcccC
Q 028802 154 DILKG 158 (203)
Q Consensus 154 ~~~~~ 158 (203)
+++..
T Consensus 275 t~~~~ 279 (301)
T d1l0qa2 275 TNTIT 279 (301)
T ss_dssp TTEEE
T ss_pred CCeEE
Confidence 88654
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.66 E-value=2.3e-14 Score=103.66 Aligned_cols=142 Identities=16% Similarity=0.170 Sum_probs=113.0
Q ss_pred EEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEE-EecCCCeEEEEEcCCccccceeeecCCCCceeEE-E
Q 028802 11 LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-L 88 (203)
Q Consensus 11 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~-~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~ 88 (203)
++.+.+++|.+||+.+++.+.++... ..+..++|+|+|++|+ ++..++.|.+||+.+ ...+..+.. +.. +..+ +
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t-~~~~~~~~~-~~~-~~~~~~ 81 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTAT-NNVIATVPA-GSS-PQGVAV 81 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTT-TEEEEEEEC-SSS-EEEEEE
T ss_pred EEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCC-Cceeeeeec-ccc-cccccc
Confidence 45678899999999999999888754 4578999999999874 666789999999975 466677766 544 4556 8
Q ss_pred eeCCCEEEE-EcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEE-EeCCCcEEEEeCCCcccC
Q 028802 89 KLDEDRVIT-GSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGS-ISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 89 ~~~~~~l~~-~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~ 158 (203)
++++..+++ +..++.+.+|+..+++....+..+ . .+.++.|+|++..++. +..++.+.+|+..+....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~ 151 (301)
T d1l0qa2 82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-K-SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI 151 (301)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-S-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred ccccccccccccccceeeecccccceeeeecccc-c-cceEEEeecCCCeeeeeeccccceeeeecccccee
Confidence 999987665 456778999999999888888766 3 5788999999998764 447888999999887644
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=4.9e-14 Score=103.43 Aligned_cols=144 Identities=16% Similarity=0.149 Sum_probs=102.9
Q ss_pred EEEEEcCCCeEEEEEcCCCe---EEEeecCCcccEEEEEEeeCCCEEEEec-CCCeEEEEEcCCccccceee--ecCCCC
Q 028802 9 KLLGTSGDGTLSVCNLRKNT---VQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSDRF--VGLSPN 82 (203)
Q Consensus 9 ~l~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~--~~~~~~ 82 (203)
.+++++.+++|++|++.... .+..+ .+...+..|+|+|||++|++++ .++.|++|++.......... .. ...
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~-~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~-~~~ 83 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA-LPG 83 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE-CSS
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEE-cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecc-cCC
Confidence 35777889999999987542 23333 4567899999999999986555 58999999997533322211 22 334
Q ss_pred ceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCceeeee--ccCCCcceEEEEEeCCCCeEEEEe-CCCcEEEEeCCCc
Q 028802 83 SVDAL-LKLDEDRVITGSE-NGLISLVGILPNRIIQPI--AEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLDDI 155 (203)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~-dg~v~v~d~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~ 155 (203)
.+..+ |+|+|++|++++. ++.|.+|+.......... ..+.. .+.++.++|+++++++++ .+..|.+|+..+.
T Consensus 84 ~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~ 160 (333)
T d1ri6a_ 84 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD-GCHSANISPDNRTLWVPALKQDRICLFTVSDD 160 (333)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT-TBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred CceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCc-cceEEEeeecceeeeccccccceeeEEEeccC
Confidence 46667 9999999998875 678999988766543332 23323 678899999999988777 5567999987654
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.53 E-value=1.1e-12 Score=97.74 Aligned_cols=62 Identities=10% Similarity=0.094 Sum_probs=49.6
Q ss_pred EEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCe--EEEEeCCCcEEEEeCCCcccCCC
Q 028802 97 TGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF--LGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 97 ~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
....++.+.+||+.+++.+..+... . .+..++|+|||+. +++++.|+.|++||+.+++....
T Consensus 293 ~~~~~~~v~~~d~~t~~~~~~~~~~-~-~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~ 356 (373)
T d2madh_ 293 LHAAAKEVTSVTGLVGQTSSQISLG-H-DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred eecCCCeEEEEECCCCcEEEEecCC-C-CeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEE
Confidence 3445677899999999988877654 3 6889999999985 45788999999999999876543
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.49 E-value=2.5e-13 Score=104.95 Aligned_cols=145 Identities=12% Similarity=0.021 Sum_probs=106.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeec-----CCcccEEEEEEeeCCCEEEEecC---------CCeEEEEEc
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-----FSEEELTSVVLMKNGRKVVCGSQ---------SGTVLLYSW 66 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-----~~~~~i~~l~~~~~~~~l~~~~~---------d~~i~v~d~ 66 (203)
+.|.+++++++. .++.|.+||+.+++....+. .+...|.++.|+||+++|+.++. .+.+.+||+
T Consensus 22 ~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~ 99 (470)
T d2bgra1 22 LRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL 99 (470)
T ss_dssp CEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred CEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEEC
Confidence 468899987764 46889999999987655443 34567999999999999988753 467889999
Q ss_pred CCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCC-----------------cceEE
Q 028802 67 GYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE-----------------YPIES 128 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~-----------------~~i~~ 128 (203)
.+ ..+..+.. +...+..+ |+|+|+.|+.. .++.+++|+..+++.......+.. .....
T Consensus 100 ~~--~~~~~l~~-~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~ 175 (470)
T d2bgra1 100 NK--RQLITEER-IPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA 175 (470)
T ss_dssp TT--TEECCSSC-CCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred CC--Cccccccc-CCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccc
Confidence 74 33455666 77788888 99999999986 466899999988876654332211 12355
Q ss_pred EEEeCCCCeEEEEeCCCc-EEEEe
Q 028802 129 LALSHDRKFLGSISHDSM-LKLWD 151 (203)
Q Consensus 129 ~~~~~~~~~l~~~~~d~~-i~iwd 151 (203)
+.|+|||++|++...|.. +..|.
T Consensus 176 ~~wSPDGk~ia~~~~d~~~v~~~~ 199 (470)
T d2bgra1 176 LWWSPNGTFLAYAQFNDTEVPLIE 199 (470)
T ss_dssp EEECTTSSEEEEEEEECTTCCEEE
T ss_pred cEECCCCCccceeEecCCcCceEE
Confidence 789999999998875433 44443
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.47 E-value=4.3e-12 Score=94.57 Aligned_cols=149 Identities=9% Similarity=-0.142 Sum_probs=108.1
Q ss_pred CcccccCCEEEEEc-----CCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEec----------CCCeEEEEE
Q 028802 1 MTFAADAMKLLGTS-----GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS----------QSGTVLLYS 65 (203)
Q Consensus 1 l~~sp~~~~l~~~~-----~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~----------~d~~i~v~d 65 (203)
++++|+|+.+++.. ..+.|++||..+++.+..+..+..+ .++|+|||++|++++ .++.|.+||
T Consensus 26 ~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D 103 (373)
T d2madh_ 26 EAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFD 103 (373)
T ss_pred cccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEE
Confidence 47899999987652 3467999999999999888765543 689999999998864 357899999
Q ss_pred cCCccccceeeecCCCCc-------eeEE-EeeCCCEEEEEc--CCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCC
Q 028802 66 WGYFKDCSDRFVGLSPNS-------VDAL-LKLDEDRVITGS--ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR 135 (203)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~-------v~~~-~~~~~~~l~~~~--~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 135 (203)
+.+ .+.+..+.. +... ...+ |+++++.++... .++.+.+|+....+...... ...++.++|++
T Consensus 104 ~~t-~~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~g 176 (373)
T d2madh_ 104 PVT-FLPIADIEL-PDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS-----SPTCYHIHPGA 176 (373)
T ss_pred CCC-CcEEEEEec-CCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec-----cceeEEEecCC
Confidence 975 455554443 3322 2334 788888776654 35678888887766554432 34678899998
Q ss_pred CeE-EEEeCCCcEEEEeCCCcccC
Q 028802 136 KFL-GSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 136 ~~l-~~~~~d~~i~iwd~~~~~~~ 158 (203)
+.+ ++.+.|+.+.+|+..+....
T Consensus 177 ~~~~v~~~~dg~~~~~~~~~~~~~ 200 (373)
T d2madh_ 177 PSTFYLLCAQGGLAKTDHAGGAAG 200 (373)
T ss_pred CcEEEEEcCCCeEEEEEcCCceee
Confidence 765 67779999999998876544
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.39 E-value=8.6e-13 Score=98.73 Aligned_cols=157 Identities=9% Similarity=-0.020 Sum_probs=104.2
Q ss_pred CcccccCCEEEEEc----------CCCeEEEEEcCCCeEEEeecCCc-------ccEEEEEEeeCCCEEEEec-CCCeEE
Q 028802 1 MTFAADAMKLLGTS----------GDGTLSVCNLRKNTVQTRSEFSE-------EELTSVVLMKNGRKVVCGS-QSGTVL 62 (203)
Q Consensus 1 l~~sp~~~~l~~~~----------~d~~i~v~d~~~~~~~~~~~~~~-------~~i~~l~~~~~~~~l~~~~-~d~~i~ 62 (203)
++|+|||+.|++++ .++.|.+||..+++.+..+..+. .....++|+|||++|+++. .++.+.
T Consensus 70 ~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~ 149 (368)
T d1mdah_ 70 AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAA 149 (368)
T ss_dssp EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEE
T ss_pred ceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEE
Confidence 46899999888753 46789999999998877665322 1234689999999988776 468999
Q ss_pred EEEcCCccccceeee----------------------------------------------------------------c
Q 028802 63 LYSWGYFKDCSDRFV----------------------------------------------------------------G 78 (203)
Q Consensus 63 v~d~~~~~~~~~~~~----------------------------------------------------------------~ 78 (203)
+||+... .....+. .
T Consensus 150 ~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 228 (368)
T d1mdah_ 150 GLSVPGA-SDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA 228 (368)
T ss_dssp EEEETTT-EEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC
T ss_pred EEECCCC-cEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEe
Confidence 9987532 1110000 0
Q ss_pred C---------C-----------------------CCceeEE-EeeCCCEEEEEcCC---------CcEEEEEccCCceee
Q 028802 79 L---------S-----------------------PNSVDAL-LKLDEDRVITGSEN---------GLISLVGILPNRIIQ 116 (203)
Q Consensus 79 ~---------~-----------------------~~~v~~~-~~~~~~~l~~~~~d---------g~v~v~d~~~~~~~~ 116 (203)
. . ......+ ++|++..++....+ ..|.+||..+++.+.
T Consensus 229 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~ 308 (368)
T d1mdah_ 229 VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG 308 (368)
T ss_dssp BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEE
T ss_pred cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeE
Confidence 0 0 0001112 34455554443221 248889999998887
Q ss_pred eeccCCCcceEEEEEeCCCCe-E-EEEeCCCcEEEEeCCCcccCCC
Q 028802 117 PIAEHSEYPIESLALSHDRKF-L-GSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 117 ~~~~~~~~~i~~~~~~~~~~~-l-~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
.+... . .+.+++|+|||+. | +++..++.|++||..+++....
T Consensus 309 ~~~~~-~-~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~ 352 (368)
T d1mdah_ 309 PISNG-H-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSS 352 (368)
T ss_dssp CCEEE-E-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEE
T ss_pred EecCC-C-ceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEE
Confidence 77654 3 6889999999974 3 4566789999999999876543
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.39 E-value=3.9e-12 Score=94.02 Aligned_cols=155 Identities=12% Similarity=0.114 Sum_probs=103.1
Q ss_pred CcccccCCEEEEEc--CCCeEEEEEcCCCeEEEeecCCcc-------c--------------------------------
Q 028802 1 MTFAADAMKLLGTS--GDGTLSVCNLRKNTVQTRSEFSEE-------E-------------------------------- 39 (203)
Q Consensus 1 l~~sp~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~-------~-------------------------------- 39 (203)
++|+|++++++++. .+..+.+|+..+++.+..+..+.. .
T Consensus 111 ~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~ 190 (355)
T d2bbkh_ 111 TSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH 190 (355)
T ss_dssp EEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS
T ss_pred EEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc
Confidence 36899999887764 467899999988876655432211 1
Q ss_pred ------EEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc-ceeeecCC----------CCceeEE-EeeCCCEEEEEcCC
Q 028802 40 ------LTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC-SDRFVGLS----------PNSVDAL-LKLDEDRVITGSEN 101 (203)
Q Consensus 40 ------i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~-~~~~~~~~----------~~~v~~~-~~~~~~~l~~~~~d 101 (203)
+....+.+++..++.++.++.+++|++...... +..... + ......+ +++++..++....+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~ 269 (355)
T d2bbkh_ 191 PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEA-LTEAERADGWRPGGWQQVAYHRALDRIYLLVDQ 269 (355)
T ss_dssp CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEES-SCHHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCC-cccceEeeeeeccceEEEEEeCCCCeEEEEecc
Confidence 112234444556667777888999988643211 111111 1 1122334 78888888765433
Q ss_pred ----------CcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCe--EEEEeCCCcEEEEeCCCcccC
Q 028802 102 ----------GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF--LGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 102 ----------g~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--l~~~~~d~~i~iwd~~~~~~~ 158 (203)
..|.+||+.+++.+..+..+ . .+.+++|+|||+. +++++.|+.|++||+.+++..
T Consensus 270 ~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~-~-~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~ 336 (355)
T d2bbkh_ 270 RDEWRHKTASRFVVVLDAKTGERLAKFEMG-H-EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL 336 (355)
T ss_dssp CCTTCTTSCEEEEEEEETTTCCEEEEEEEE-E-EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred CCceeecCCCCeEEEEeCCCCcEEEEecCC-C-CEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEE
Confidence 36999999999988877654 3 5889999999973 456668999999999988754
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=3.1e-11 Score=88.12 Aligned_cols=154 Identities=12% Similarity=0.117 Sum_probs=102.7
Q ss_pred CcccccCCEEEEE-cCCCeEEEEEcCCCeEEEee---cCCcccEEEEEEeeCCCEEEEecC-CCeEEEEEcCCcccc-ce
Q 028802 1 MTFAADAMKLLGT-SGDGTLSVCNLRKNTVQTRS---EFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDC-SD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~-~~d~~i~v~d~~~~~~~~~~---~~~~~~i~~l~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~-~~ 74 (203)
|+|||||++|+++ ..++.|++|++........+ ..+...+..++|+|+|++|++++. ++.+.+|+....... ..
T Consensus 42 la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~ 121 (333)
T d1ri6a_ 42 MVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV 121 (333)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEE
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecc
Confidence 5799999998655 45899999999764321111 123345678999999999988875 678899987642211 11
Q ss_pred eeecCCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCceeee-----eccCCCcceEEEEEeCCCCeEEEEe-CCCc
Q 028802 75 RFVGLSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILPNRIIQP-----IAEHSEYPIESLALSHDRKFLGSIS-HDSM 146 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~-dg~v~v~d~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~ 146 (203)
.... +...+.++ ++|++++++.++. +..|.+|+......... ...........++|++++.+++... ..+.
T Consensus 122 ~~~~-~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~ 200 (333)
T d1ri6a_ 122 DVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSS 200 (333)
T ss_dssp EEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTE
T ss_pred cccC-CCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCc
Confidence 2233 45556667 8999998887765 55689999875432211 1111122568899999999887655 5567
Q ss_pred EEEEeCCCc
Q 028802 147 LKLWDLDDI 155 (203)
Q Consensus 147 i~iwd~~~~ 155 (203)
..+|++...
T Consensus 201 ~~v~~~~~~ 209 (333)
T d1ri6a_ 201 VDVWELKDP 209 (333)
T ss_dssp EEEEESSCT
T ss_pred eEEEeeccc
Confidence 788876443
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.35 E-value=4e-12 Score=93.20 Aligned_cols=116 Identities=12% Similarity=0.032 Sum_probs=89.7
Q ss_pred EEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEE-EcCCCcEEEEEccCCceeeeecc
Q 028802 43 VVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVIT-GSENGLISLVGILPNRIIQPIAE 120 (203)
Q Consensus 43 l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~-~~~dg~v~v~d~~~~~~~~~~~~ 120 (203)
++|++++++|++++.+++|.+||+.+ .+++..+..-+...+..+ |+|+|+++++ +..++.|++||+.+++.+..+..
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t-~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~ 80 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVAS-DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 80 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTT-TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCC-CCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecc
Confidence 46889999999999999999999985 566776653145566778 9999998754 55789999999999988876654
Q ss_pred CCC-----cceEEEEEeCCCCeEEEEe------------CCCcEEEEeCCCcccCC
Q 028802 121 HSE-----YPIESLALSHDRKFLGSIS------------HDSMLKLWDLDDILKGS 159 (203)
Q Consensus 121 ~~~-----~~i~~~~~~~~~~~l~~~~------------~d~~i~iwd~~~~~~~~ 159 (203)
... ..+..++|+|||+++++++ .+..+.+|+..++....
T Consensus 81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 136 (346)
T d1jmxb_ 81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK 136 (346)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC
T ss_pred cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeee
Confidence 321 1356789999999987664 46789999988876543
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.32 E-value=5.8e-11 Score=87.55 Aligned_cols=149 Identities=9% Similarity=-0.050 Sum_probs=98.4
Q ss_pred cccccCCEEEEEc-----CCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEec----------CCCeEEEEEc
Q 028802 2 TFAADAMKLLGTS-----GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS----------QSGTVLLYSW 66 (203)
Q Consensus 2 ~~sp~~~~l~~~~-----~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~----------~d~~i~v~d~ 66 (203)
+.+||++.+++.. ..+.|++||..+++++.++..+..+ .++|+|||++|++.+ .++.|.+||+
T Consensus 8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~ 85 (355)
T d2bbkh_ 8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 85 (355)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEEC
Confidence 4689999987753 3567999999999998888765443 699999999887643 4688999999
Q ss_pred CCccccceeeecCCC-------CceeEE-EeeCCCEEEEEc--CCCcEEEEEccCCceeeeeccCCC------cceEEEE
Q 028802 67 GYFKDCSDRFVGLSP-------NSVDAL-LKLDEDRVITGS--ENGLISLVGILPNRIIQPIAEHSE------YPIESLA 130 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~-------~~v~~~-~~~~~~~l~~~~--~dg~v~v~d~~~~~~~~~~~~~~~------~~i~~~~ 130 (203)
.+ +.....+.. +. .....+ |+|+++.++++. .+..+.+|+..+++.+..+..+.. .....+.
T Consensus 86 ~t-~~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (355)
T d2bbkh_ 86 VT-LLPTADIEL-PDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFM 163 (355)
T ss_dssp TT-CCEEEEEEE-TTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEE
T ss_pred CC-CCEEEEEec-CCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEE
Confidence 75 454444432 11 123445 899999888765 456789999988877766554321 0123345
Q ss_pred EeCCCCeEEEEe-CCCcEEEEeCCC
Q 028802 131 LSHDRKFLGSIS-HDSMLKLWDLDD 154 (203)
Q Consensus 131 ~~~~~~~l~~~~-~d~~i~iwd~~~ 154 (203)
+++++..++... .++.+.+++..+
T Consensus 164 ~~~dg~~~~v~~~~~~~~~~~~~~~ 188 (355)
T d2bbkh_ 164 HCRDGSLAKVAFGTEGTPEITHTEV 188 (355)
T ss_dssp EETTSCEEEEECCSSSCCEEEECCC
T ss_pred EcCCCCEEEEEecCCCeEEEEeccc
Confidence 566655544332 334444444433
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=1.3e-08 Score=72.05 Aligned_cols=152 Identities=16% Similarity=0.147 Sum_probs=89.1
Q ss_pred cccccCCEEEEEcCC---CeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC-CCeEEE--EEcCCc------
Q 028802 2 TFAADAMKLLGTSGD---GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLL--YSWGYF------ 69 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d~~i~v--~d~~~~------ 69 (203)
+|||||+.||..... ..+.+.+...+... .+..+........|+|+|..++.... .+...+ +.....
T Consensus 45 ~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (269)
T d2hqsa1 45 AWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT 123 (269)
T ss_dssp EECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECC
T ss_pred EECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCeeeEeeecCCccceeecccccccceeee
Confidence 699999999876543 35777777666543 34445667788899999988776443 221111 111000
Q ss_pred ------------------------------------cccceeeecCCCCceeEE-EeeCCCEEEEEcCCC---cEEEEEc
Q 028802 70 ------------------------------------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENG---LISLVGI 109 (203)
Q Consensus 70 ------------------------------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg---~v~v~d~ 109 (203)
......+.. ........ ++|+++.++..+.++ .+.+++.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~ 202 (269)
T d2hqsa1 124 DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITW-EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL 202 (269)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCC-SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred eccccccccccccccccceecccccCCceEeeeecccccceeeec-ccccccccccccccceeEEEeecCCceeeeEeec
Confidence 000001111 12223334 799999988776643 3555555
Q ss_pred cCCceeeeeccCCCcceEEEEEeCCCCeEEEEeC---CCcEEEEeCCCcccC
Q 028802 110 LPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH---DSMLKLWDLDDILKG 158 (203)
Q Consensus 110 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~ 158 (203)
..+... .+. ... ......|+|||++|+..+. ...|+++++.+....
T Consensus 203 ~~~~~~-~~~-~~~-~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~ 251 (269)
T d2hqsa1 203 ATGGVQ-VLS-STF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKA 251 (269)
T ss_dssp TTCCEE-ECC-CSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEE
T ss_pred ccccce-Eee-cCc-cccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE
Confidence 544432 222 223 5677899999999886553 346899999876543
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.08 E-value=6.1e-09 Score=78.98 Aligned_cols=150 Identities=11% Similarity=0.060 Sum_probs=100.4
Q ss_pred ccccCCEEEEE-cCCCeEEEEEcCCCeEEEeecC-CcccEEEEEEeeCCCE--EEEecCCC-----------------eE
Q 028802 3 FAADAMKLLGT-SGDGTLSVCNLRKNTVQTRSEF-SEEELTSVVLMKNGRK--VVCGSQSG-----------------TV 61 (203)
Q Consensus 3 ~sp~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~-~~~~i~~l~~~~~~~~--l~~~~~d~-----------------~i 61 (203)
++|||++|++. ..++.|.++|+.+.+....+.. ....+..++|+|+++. ++..+.+. .+
T Consensus 79 gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~ 158 (441)
T d1qnia2 79 GRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMF 158 (441)
T ss_dssp TEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEE
T ss_pred ccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceE
Confidence 57899998665 4678999999999988776653 4567999999999984 44333322 22
Q ss_pred EEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCC---------------------------------------
Q 028802 62 LLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSEN--------------------------------------- 101 (203)
Q Consensus 62 ~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d--------------------------------------- 101 (203)
..+|..+ ......+.. ...+..+ ++|+|+++++.+.+
T Consensus 159 ~~iD~~t-~~v~~qI~v--~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~ 235 (441)
T d1qnia2 159 TAIDAET-MDVAWQVIV--DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIG 235 (441)
T ss_dssp EEEETTT-CSEEEEEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCT
T ss_pred EeecCcc-ceeeEEEec--CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeC
Confidence 4456553 233333333 2344556 89999988877643
Q ss_pred --CcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEE-EeCCCcEEEEeCCCccc
Q 028802 102 --GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGS-ISHDSMLKLWDLDDILK 157 (203)
Q Consensus 102 --g~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~ 157 (203)
+.+.+++....+.+..+..+ . ....+.++|||+++++ +..+++|.|||+.+..+
T Consensus 236 ~~~v~vvd~~~~~~v~~~IPvg-k-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~ 292 (441)
T d1qnia2 236 DSKVPVVDGRGESEFTRYIPVP-K-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDD 292 (441)
T ss_dssp TCCCCEEECSSSCSSEEEECCB-S-SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHH
T ss_pred CCCcEEEEcccCCceEEEEeCC-C-CccCceECCCCCEEEEeCCcCCcEEEEEeehhhh
Confidence 23333433444455556555 2 4578999999998765 55899999999987654
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.01 E-value=5e-09 Score=77.85 Aligned_cols=146 Identities=10% Similarity=-0.184 Sum_probs=96.0
Q ss_pred cccccCCEE--EE-EcCC--CeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEec----------CCCeEEEEEc
Q 028802 2 TFAADAMKL--LG-TSGD--GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS----------QSGTVLLYSW 66 (203)
Q Consensus 2 ~~sp~~~~l--~~-~~~d--~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~----------~d~~i~v~d~ 66 (203)
+..++++.. +. ...+ ..|++||..+++.+..+..+..+ .++|+|||+.|++.+ .++.|.+||.
T Consensus 26 a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~ 103 (368)
T d1mdah_ 26 GPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDP 103 (368)
T ss_dssp CCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECT
T ss_pred ccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEEC
Confidence 345677753 22 2334 45778899999998888765544 589999999888754 3678999999
Q ss_pred CCccccceeeecCCC-------CceeEE-EeeCCCEEEEEc-CCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCe
Q 028802 67 GYFKDCSDRFVGLSP-------NSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF 137 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~-------~~v~~~-~~~~~~~l~~~~-~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 137 (203)
.+ .++...+.. +. .....+ |+|+|++++++. .++.+.+||+.+++.+..+..+....+ +......
T Consensus 104 ~t-~~~~~~i~~-p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~ 177 (368)
T d1mdah_ 104 VT-FLPIADIEL-PDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI----HPGAAAT 177 (368)
T ss_dssp TT-CCEEEEEEE-TTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC----EEEETTE
T ss_pred CC-CcEeeeecC-CccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE----ccCCCce
Confidence 75 344444432 21 123346 899999998876 478999999999998888766533111 1112234
Q ss_pred EEEEeCCCcEEEEeCCCc
Q 028802 138 LGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 138 l~~~~~d~~i~iwd~~~~ 155 (203)
++..+.||.+.+|++...
T Consensus 178 ~v~~~~Dg~~~~~~~~~~ 195 (368)
T d1mdah_ 178 HYLGSCPASLAASDLAAA 195 (368)
T ss_dssp EECCCCTTSCEEEECCSS
T ss_pred EEEEcCCCCEEEEEecCC
Confidence 455556666666665443
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.00 E-value=3.4e-08 Score=73.51 Aligned_cols=155 Identities=11% Similarity=0.079 Sum_probs=96.0
Q ss_pred CcccccCCEEEEEcC-CCeEEEEEcCC-CeEE--Eee--cCCcccEEEEEEeeCCCEEEEec-CCCeEEEEEcCCcccc-
Q 028802 1 MTFAADAMKLLGTSG-DGTLSVCNLRK-NTVQ--TRS--EFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDC- 72 (203)
Q Consensus 1 l~~sp~~~~l~~~~~-d~~i~v~d~~~-~~~~--~~~--~~~~~~i~~l~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~- 72 (203)
++|+|+|++|+++.. ...|.+|+... +... ..+ .........++|+|+++++++.. .+++|.+|++......
T Consensus 150 v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~ 229 (365)
T d1jofa_ 150 MVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMP 229 (365)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred EEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceE
Confidence 468999998877754 46788887654 3221 121 22346788999999999886655 4789999998643211
Q ss_pred ceeeec----------------CCCCceeEE-EeeCCCEEEEEcC------CCcEEEEEccCCceee-ee---c-cCCCc
Q 028802 73 SDRFVG----------------LSPNSVDAL-LKLDEDRVITGSE------NGLISLVGILPNRIIQ-PI---A-EHSEY 124 (203)
Q Consensus 73 ~~~~~~----------------~~~~~v~~~-~~~~~~~l~~~~~------dg~v~v~d~~~~~~~~-~~---~-~~~~~ 124 (203)
+..... ........+ ++|+|++++++.. ...|..|.+.....+. .. . ...+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~ 309 (365)
T d1jofa_ 230 VYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGG 309 (365)
T ss_dssp EEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCT
T ss_pred EEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCC
Confidence 111000 011123455 7999999988753 2337777765422111 11 1 11122
Q ss_pred ceEEEEEeC-CCCeEEEEe-CCCcEEEEeCCCc
Q 028802 125 PIESLALSH-DRKFLGSIS-HDSMLKLWDLDDI 155 (203)
Q Consensus 125 ~i~~~~~~~-~~~~l~~~~-~d~~i~iwd~~~~ 155 (203)
....++++| +|++|+++. .++.|.+|+++..
T Consensus 310 ~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 310 HSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 456789998 789887665 7789999987543
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.98 E-value=1.2e-09 Score=83.87 Aligned_cols=111 Identities=9% Similarity=0.038 Sum_probs=84.6
Q ss_pred EEEEEeeCCCEEEEecCCCeEEEEEcCCcccccee-----eecCCCCceeEE-EeeCCCEEEEEcC---------CCcEE
Q 028802 41 TSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR-----FVGLSPNSVDAL-LKLDEDRVITGSE---------NGLIS 105 (203)
Q Consensus 41 ~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-----~~~~~~~~v~~~-~~~~~~~l~~~~~---------dg~v~ 105 (203)
..+.|.+++.++.. .++.+.+||+.+. ..... +.. +...+.++ |+|||++|++++. .+.+.
T Consensus 20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~-~~~~~~~~~~~~~-~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~ 95 (470)
T d2bgra1 20 YSLRWISDHEYLYK--QENNILVFNAEYG-NSSVFLENSTFDE-FGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (470)
T ss_dssp CCCEECSSSEEEEE--SSSCEEEEETTTC-CEEEEECTTTTTT-SSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cCCEeCCCCEEEEE--cCCcEEEEECCCC-CEEEEEchhhhhh-ccCccceeEECCCCCEEEEEECCcceeeeccCceEE
Confidence 35789999887664 4678999999864 33222 233 45678888 9999999998753 46789
Q ss_pred EEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 106 LVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 106 v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
+||+.+++. ..+..+.. .+..+.|+|||++||... ++.+++|+..++...
T Consensus 96 l~d~~~~~~-~~l~~~~~-~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~ 145 (470)
T d2bgra1 96 IYDLNKRQL-ITEERIPN-NTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSY 145 (470)
T ss_dssp EEETTTTEE-CCSSCCCT-TEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCE
T ss_pred EEECCCCcc-cccccCCc-cccccccccCcceeeEee-cccceEEECCCCcee
Confidence 999998765 45666655 789999999999999864 778999999887643
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.86 E-value=5.9e-07 Score=64.08 Aligned_cols=151 Identities=11% Similarity=0.100 Sum_probs=102.6
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEee--cCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecC
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRS--EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
++.++|+++++....+.+.+++.. ++.+..+ ..+......+++.++++.+++....+.|++|+.. +..+..+-..
T Consensus 120 avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~--G~~~~~~g~~ 196 (279)
T d1q7fa_ 120 TVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE--GQYLRQIGGE 196 (279)
T ss_dssp EECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT--CCEEEEESCT
T ss_pred ccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccceeeeecC--Cceeeeeccc
Confidence 445666666666666667776643 3444444 3345667889999999888888888999999975 4555554320
Q ss_pred -CCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCceeeeeccCC-CcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 80 -SPNSVDAL-LKLDEDRVITGSE-NGLISLVGILPNRIIQPIAEHS-EYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 80 -~~~~v~~~-~~~~~~~l~~~~~-dg~v~v~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
.......+ +.++|+++++-.. ++.|.+|+ .+|+.+..+.... ....+.+++.|+|.+++ +..+..|++|...+.
T Consensus 197 g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 197 GITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQL 274 (279)
T ss_dssp TTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCC
T ss_pred ccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeee
Confidence 22345667 7999997776544 45699998 4577776664332 12578899999997554 557899999998766
Q ss_pred cc
Q 028802 156 LK 157 (203)
Q Consensus 156 ~~ 157 (203)
.+
T Consensus 275 ~~ 276 (279)
T d1q7fa_ 275 AP 276 (279)
T ss_dssp CC
T ss_pred cC
Confidence 44
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.81 E-value=2.8e-07 Score=65.10 Aligned_cols=151 Identities=7% Similarity=-0.006 Sum_probs=99.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 80 (203)
|+++++++++++....+.+++++..+...+..... ......+++.++++++++-.....+..++... .....+....
T Consensus 62 vav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~--~~~~~~~~~~ 138 (260)
T d1rwia_ 62 LAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS--KTQTVLPFTG 138 (260)
T ss_dssp EEECTTCCEEEEETTTEEEEECTTCSCCEECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTC--SSCEECCCCS
T ss_pred EEEcCCCCEEEeeeeeceeeeeeeccceeeeeeee-eeecccccccccceeEeecccccccccccccc--ceeeeeeecc
Confidence 46778888777766666666665444444333322 34578999999998888776677777777643 2222221102
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
......+ ++++++.+++....+.|..++............... ....+++.++|+++++....+.|..++..+.
T Consensus 139 ~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~-~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~ 213 (260)
T d1rwia_ 139 LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDIT-APWGIAVDEAGTVYVTEHNTNQVVKLLAGST 213 (260)
T ss_dssp CCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCC-SEEEEEECTTCCEEEEETTTTEEEEECTTCS
T ss_pred cCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccC-CCccceeeeeeeeeeeecCCCEEEEEeCCCC
Confidence 3345667 789999888888888999999775443322222223 5788999999988888777888888876544
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.79 E-value=3.8e-07 Score=64.40 Aligned_cols=149 Identities=7% Similarity=-0.042 Sum_probs=93.5
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee-cCC
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV-GLS 80 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~ 80 (203)
+++++++++++-.....+.+++...................+++.++++.+++....+.|..++.... ....+. . .
T Consensus 104 avd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~--~~~~~~~~-~ 180 (260)
T d1rwia_ 104 AVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN--NQVVLPFT-D 180 (260)
T ss_dssp EECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTC--CEEECCCS-S
T ss_pred cccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccc--eeeeeecc-c
Confidence 45566665555544555555555443222211122234568899999998888888889999987632 222222 2 3
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028802 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
......+ +.++|+++++....+.|..++..... ...+....-.....|+++++|..+++-..++.|+.++...
T Consensus 181 ~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~~ 254 (260)
T d1rwia_ 181 ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE 254 (260)
T ss_dssp CCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-CEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred cCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-EEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCCC
Confidence 3445667 78999988888888888888765432 2222222112568999999998877766777777766543
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.78 E-value=1.7e-07 Score=71.01 Aligned_cols=132 Identities=8% Similarity=0.025 Sum_probs=91.3
Q ss_pred EEEEcCCCeEEEEEcCCCeEEEeecC------------------------------CcccEEEEEEeeCCCEEEEec-CC
Q 028802 10 LLGTSGDGTLSVCNLRKNTVQTRSEF------------------------------SEEELTSVVLMKNGRKVVCGS-QS 58 (203)
Q Consensus 10 l~~~~~d~~i~v~d~~~~~~~~~~~~------------------------------~~~~i~~l~~~~~~~~l~~~~-~d 58 (203)
+++++.+|+|.||++.+++.+..+.. |...+.....+|||++|++.. .+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 46778899999999999988776532 222344455679999886665 57
Q ss_pred CeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEE--EEEcCCC-----------------cEEEEEccCCceeeee
Q 028802 59 GTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRV--ITGSENG-----------------LISLVGILPNRIIQPI 118 (203)
Q Consensus 59 ~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l--~~~~~dg-----------------~v~v~d~~~~~~~~~~ 118 (203)
++|.++|+.+ .+....+.--+...+..+ |+|+|+.+ +..+.+. .+..+|..+.+...++
T Consensus 94 ~rVavIDl~t-~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI 172 (441)
T d1qnia2 94 TRVARIRLDI-MKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV 172 (441)
T ss_dssp TEEEEEETTT-TEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE
T ss_pred CEEEEEECCC-CcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEE
Confidence 8999999985 344444432034566777 89999854 3333221 2355788888777777
Q ss_pred ccCCCcceEEEEEeCCCCeEEEEeCC
Q 028802 119 AEHSEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 119 ~~~~~~~i~~~~~~~~~~~l~~~~~d 144 (203)
... . ....+.|+|+|+++++.+.+
T Consensus 173 ~v~-~-~p~~v~~spdGk~a~vt~~n 196 (441)
T d1qnia2 173 IVD-G-NLDNTDADYTGKYATSTCYN 196 (441)
T ss_dssp EES-S-CCCCEEECSSSSEEEEEESC
T ss_pred ecC-C-CccceEECCCCCEEEEEecC
Confidence 665 3 47789999999999888754
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.72 E-value=1.9e-06 Score=62.69 Aligned_cols=150 Identities=17% Similarity=0.196 Sum_probs=92.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCC----CeEEEEEcCCccccceee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS----GTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d----~~i~v~d~~~~~~~~~~~ 76 (203)
++|.++|+++++-...+.|+.|+..++.....+.........+++.++|+++++...+ +.+...+.. ...+..+
T Consensus 45 ~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~--~~~~~~~ 122 (319)
T d2dg1a1 45 LNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN--GDNLQDI 122 (319)
T ss_dssp EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT--SCSCEEE
T ss_pred CEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCC--Cceeeee
Confidence 3688999877777778899999987766555554445668899999999988775432 234444433 2333322
Q ss_pred ec--CCCCceeEE-EeeCCCEEEEEcC------CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEE-eCCCc
Q 028802 77 VG--LSPNSVDAL-LKLDEDRVITGSE------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSI-SHDSM 146 (203)
Q Consensus 77 ~~--~~~~~v~~~-~~~~~~~l~~~~~------dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~ 146 (203)
.. .....+..+ +.++|.+.++... .+.+..++...+ .+..+...-. ....++|+|+++.|+.+ +..+.
T Consensus 123 ~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~~~-~pnGia~s~dg~~lyvad~~~~~ 200 (319)
T d2dg1a1 123 IEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQNIS-VANGIALSTDEKVLWVTETTANR 200 (319)
T ss_dssp ECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEEES-SEEEEEECTTSSEEEEEEGGGTE
T ss_pred ccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc-eeEEEeeccc-eeeeeeeccccceEEEecccCCc
Confidence 22 012234556 7899987665432 233555554433 3322222212 46789999999876544 56789
Q ss_pred EEEEeCCC
Q 028802 147 LKLWDLDD 154 (203)
Q Consensus 147 i~iwd~~~ 154 (203)
|..|++..
T Consensus 201 I~~~d~~~ 208 (319)
T d2dg1a1 201 LHRIALED 208 (319)
T ss_dssp EEEEEECT
T ss_pred eEEEEEcC
Confidence 99998754
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=7.6e-08 Score=73.90 Aligned_cols=147 Identities=14% Similarity=0.057 Sum_probs=94.0
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC---CcccEEEEEEeeCCCEEEEec---------CCCeEEEEEcCCc
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF---SEEELTSVVLMKNGRKVVCGS---------QSGTVLLYSWGYF 69 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---~~~~i~~l~~~~~~~~l~~~~---------~d~~i~v~d~~~~ 69 (203)
.|.+++.++.. ..+|.|.+|++.+++....+.. ....+....|+||+++++... ..+.+.+||+.+.
T Consensus 23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~ 101 (465)
T d1xfda1 23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG 101 (465)
T ss_dssp CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred EEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence 57788776543 5678999999987754333322 233567788999999987753 3467889998752
Q ss_pred cccceeeec--CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcc-----------------eEEE
Q 028802 70 KDCSDRFVG--LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP-----------------IESL 129 (203)
Q Consensus 70 ~~~~~~~~~--~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~-----------------i~~~ 129 (203)
.. ..+.. .....+... |+|+|+.|+... ++.|++.+...+..++......... -..+
T Consensus 102 -~~-~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~ 178 (465)
T d1xfda1 102 -DP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAH 178 (465)
T ss_dssp -CC-EECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEE
T ss_pred -ce-eeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceE
Confidence 22 22221 023344445 899999998875 5678888877665554433221111 1467
Q ss_pred EEeCCCCeEEEEe-CCCcEEEEeC
Q 028802 130 ALSHDRKFLGSIS-HDSMLKLWDL 152 (203)
Q Consensus 130 ~~~~~~~~l~~~~-~d~~i~iwd~ 152 (203)
-|||||++||... .+..+..+.+
T Consensus 179 ~WSPDgk~iaf~~~D~s~V~~~~~ 202 (465)
T d1xfda1 179 WWSPDGTRLAYAAINDSRVPIMEL 202 (465)
T ss_dssp EECTTSSEEEEEEEECTTSCEEEE
T ss_pred EECCCCCeEEEEEecccccceeec
Confidence 7999999998776 3444555543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.66 E-value=2.1e-06 Score=61.81 Aligned_cols=152 Identities=13% Similarity=0.082 Sum_probs=100.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-C
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-L 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~ 79 (203)
++++|||+++++...+++|+.|+.... . ..+......+.+++|+++|+++++...++.+..++..........+.. .
T Consensus 33 iAv~pdG~l~vt~~~~~~I~~i~p~g~-~-~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (302)
T d2p4oa1 33 LASAPDGTIFVTNHEVGEIVSITPDGN-Q-QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLP 110 (302)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTTCC-E-EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECT
T ss_pred EEECCCCCEEEEeCCCCEEEEEeCCCC-E-EEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccC
Confidence 478999999999988999999986543 2 233334567899999999999888888888888877532222222221 0
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeec--------cCC-CcceEEEEEeCCCCeEEEEeCCCcEEE
Q 028802 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA--------EHS-EYPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~--------~~~-~~~i~~~~~~~~~~~l~~~~~d~~i~i 149 (203)
.......+ +.++++++++.+..+.+..++...+....... ... ......+.++.+ ..+++.+..+.|..
T Consensus 111 ~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~-~l~~~~~~~~~i~~ 189 (302)
T d2p4oa1 111 DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGN-FLYVSNTEKMLLLR 189 (302)
T ss_dssp TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETT-EEEEEETTTTEEEE
T ss_pred CccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCC-ceeeecCCCCeEEe
Confidence 23445667 78999988888888889888877654321111 010 113445555432 33445557788888
Q ss_pred EeCCCc
Q 028802 150 WDLDDI 155 (203)
Q Consensus 150 wd~~~~ 155 (203)
+++...
T Consensus 190 ~~~~~~ 195 (302)
T d2p4oa1 190 IPVDST 195 (302)
T ss_dssp EEBCTT
T ss_pred cccccc
Confidence 887654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.64 E-value=3.2e-06 Score=61.28 Aligned_cols=115 Identities=10% Similarity=0.075 Sum_probs=78.6
Q ss_pred cEEEEEEeeCCC-----EEEEecCCCeEEEEEcCCccccc-----eeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEE
Q 028802 39 ELTSVVLMKNGR-----KVVCGSQSGTVLLYSWGYFKDCS-----DRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLV 107 (203)
Q Consensus 39 ~i~~l~~~~~~~-----~l~~~~~d~~i~v~d~~~~~~~~-----~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~ 107 (203)
..+.++|+|++. ++++-+..+.|..|++...+... ..+..........+ +..+|++.++....+.|.+|
T Consensus 173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~ 252 (314)
T d1pjxa_ 173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVF 252 (314)
T ss_dssp SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEE
Confidence 346789999764 44455668899999886432221 11111012234456 78899988887788999999
Q ss_pred EccCCceeeeeccCCCcceEEEEEeCCCCeE-EEEeCCCcEEEEeCCC
Q 028802 108 GILPNRIIQPIAEHSEYPIESLALSHDRKFL-GSISHDSMLKLWDLDD 154 (203)
Q Consensus 108 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~iwd~~~ 154 (203)
|...+..+..+..+.. .+++++|.|+++.| ++.+.++.|..+++..
T Consensus 253 dp~~g~~~~~i~~p~~-~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 253 GPDGGQPKMRIRCPFE-KPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp CTTCBSCSEEEECSSS-CEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred eCCCCEEEEEEECCCC-CEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence 9887777666665533 68899999999755 5556778888888643
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=9e-07 Score=67.82 Aligned_cols=155 Identities=14% Similarity=0.064 Sum_probs=91.5
Q ss_pred cccccCCEEEEEc---------CCCeEEEEEcCCCeEEEe--ecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcc
Q 028802 2 TFAADAMKLLGTS---------GDGTLSVCNLRKNTVQTR--SEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK 70 (203)
Q Consensus 2 ~~sp~~~~l~~~~---------~d~~i~v~d~~~~~~~~~--~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~ 70 (203)
.||||+++|+... ..+.+.++|+.++..... .......+....|+|+|+.|+... ++.|.+.+... +
T Consensus 67 ~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~-~ 144 (465)
T d1xfda1 67 EISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVG-K 144 (465)
T ss_dssp EECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSS-S
T ss_pred EECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCC-C
Confidence 4899999987753 357899999998765332 223344566789999999988765 56788877753 2
Q ss_pred ccceeeecCCCC-----------------ceeEE-EeeCCCEEEEEcCC-C-----------------------------
Q 028802 71 DCSDRFVGLSPN-----------------SVDAL-LKLDEDRVITGSEN-G----------------------------- 102 (203)
Q Consensus 71 ~~~~~~~~~~~~-----------------~v~~~-~~~~~~~l~~~~~d-g----------------------------- 102 (203)
...+....-... .-..+ |+|+|+.|+....| .
T Consensus 145 ~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~ 224 (465)
T d1xfda1 145 QAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSE 224 (465)
T ss_dssp CCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSC
T ss_pred ceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCC
Confidence 222222110111 11356 89999999986421 2
Q ss_pred ----cEEEEEccCCceeeeeccC-----CCcceEEEEEeCCCCeEEEEe-CC---CcEEEEeCCCcccC
Q 028802 103 ----LISLVGILPNRIIQPIAEH-----SEYPIESLALSHDRKFLGSIS-HD---SMLKLWDLDDILKG 158 (203)
Q Consensus 103 ----~v~v~d~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~-~d---~~i~iwd~~~~~~~ 158 (203)
.+.++|+..+......... ...-+..+.|+|+++.++... .+ ..|.++|..++...
T Consensus 225 np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~ 293 (465)
T d1xfda1 225 NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT 293 (465)
T ss_dssp CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE
T ss_pred CCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEE
Confidence 2344444433221111000 011256789999987665443 12 24788888887644
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.53 E-value=2.1e-06 Score=63.57 Aligned_cols=154 Identities=10% Similarity=0.086 Sum_probs=88.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC-CeEEEee-cCCcccEEEEEEeeCCCEEE--Eec-CCCeEEEEEcCCcccccee
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRK-NTVQTRS-EFSEEELTSVVLMKNGRKVV--CGS-QSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~-~~~~~~~-~~~~~~i~~l~~~~~~~~l~--~~~-~d~~i~v~d~~~~~~~~~~ 75 (203)
|+|+|++++|+++.. +.+..|.+.. +...... .........+.++++++.++ +.. ..+.+..+.+.........
T Consensus 45 la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~ 123 (365)
T d1jofa_ 45 MTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNV 123 (365)
T ss_dssp EEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEE
T ss_pred EEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCccee
Confidence 578999999988765 5677776653 3232211 11122234566777777433 222 2355555544221111110
Q ss_pred e---------------ecCCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccC-Ccee--eeec-cCCCcceEEEEEeCC
Q 028802 76 F---------------VGLSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILP-NRII--QPIA-EHSEYPIESLALSHD 134 (203)
Q Consensus 76 ~---------------~~~~~~~v~~~-~~~~~~~l~~~~~-dg~v~v~d~~~-~~~~--~~~~-~~~~~~i~~~~~~~~ 134 (203)
+ .......+.++ |+|+|+++++++. ...|.+|+... +... .... ...+.....++|+|+
T Consensus 124 ~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pd 203 (365)
T d1jofa_ 124 FSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPT 203 (365)
T ss_dssp EEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTT
T ss_pred EeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCC
Confidence 0 10011235567 9999998888764 45788887653 2221 1111 111236889999999
Q ss_pred CCeEEEEe-CCCcEEEEeCCCc
Q 028802 135 RKFLGSIS-HDSMLKLWDLDDI 155 (203)
Q Consensus 135 ~~~l~~~~-~d~~i~iwd~~~~ 155 (203)
++++++.. .++.|.+|++...
T Consensus 204 g~~~yv~~e~~~~V~v~~~~~~ 225 (365)
T d1jofa_ 204 GNYLYALMEAGNRICEYVIDPA 225 (365)
T ss_dssp SSEEEEEETTTTEEEEEEECTT
T ss_pred CceEEEeccCCCEEEEEEecCC
Confidence 99886665 6889999998654
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.50 E-value=5.9e-06 Score=59.39 Aligned_cols=124 Identities=15% Similarity=0.154 Sum_probs=89.1
Q ss_pred eEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEE
Q 028802 28 TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISL 106 (203)
Q Consensus 28 ~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v 106 (203)
+.+..+.. ...+..++++|||+++++...+++|..|+.. +. ...+.. ....+.++ +.++|+++++...++.+.+
T Consensus 19 ~v~~~~p~-~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~--g~-~~~~~~-~~~~~~gla~~~dG~l~v~~~~~~~~~~ 93 (302)
T d2p4oa1 19 KIITSFPV-NTFLENLASAPDGTIFVTNHEVGEIVSITPD--GN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPV 93 (302)
T ss_dssp EEEEEECT-TCCEEEEEECTTSCEEEEETTTTEEEEECTT--CC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEE
T ss_pred cEEEECCC-CCCcCCEEECCCCCEEEEeCCCCEEEEEeCC--CC-EEEEEc-CCCCcceEEEcCCCCeEEEecCCceEEE
Confidence 44444543 2357889999999999998889999888854 33 334444 56778888 8999999988888888888
Q ss_pred EEccCC--ceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028802 107 VGILPN--RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 107 ~d~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
++.... ................+++.++++++++.+.++.+..++..+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~ 145 (302)
T d2p4oa1 94 VSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPS 145 (302)
T ss_dssp EEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTE
T ss_pred EEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCc
Confidence 886543 22222222222367889999999998888888888888877653
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.44 E-value=2.9e-05 Score=56.09 Aligned_cols=153 Identities=12% Similarity=0.057 Sum_probs=93.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCc----ccEEEEEEeeCCCEEEEecC---------------CCeE
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSE----EELTSVVLMKNGRKVVCGSQ---------------SGTV 61 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~----~~i~~l~~~~~~~~l~~~~~---------------d~~i 61 (203)
|+|+++++.|+++...+.|..++...+.......... ...+.+++.++|++.++-.. .|.|
T Consensus 76 l~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v 155 (314)
T d1pjxa_ 76 CQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSI 155 (314)
T ss_dssp EEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEE
T ss_pred EEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceE
Confidence 4678899888877776778888876553322111111 13567899999988776422 2344
Q ss_pred EEEEcCCccccceeeecCCCCceeEE-EeeCCC-----EEEEEcCCCcEEEEEccCCcee------eeeccCCCcceEEE
Q 028802 62 LLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDED-----RVITGSENGLISLVGILPNRII------QPIAEHSEYPIESL 129 (203)
Q Consensus 62 ~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~-----~l~~~~~dg~v~v~d~~~~~~~------~~~~~~~~~~i~~~ 129 (203)
+.++.. +....... .......+ |+|++. ++++-+..+.|+.|++.....+ ..+........-.+
T Consensus 156 ~~~~~d--g~~~~~~~--~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGi 231 (314)
T d1pjxa_ 156 YCFTTD--GQMIQVDT--AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGM 231 (314)
T ss_dssp EEECTT--SCEEEEEE--EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEE
T ss_pred EEEeec--CceeEeeC--CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceee
Confidence 444432 33322222 22233456 788764 4444566788999987643222 12222211135679
Q ss_pred EEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028802 130 ALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 130 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
++..+|+.+++....+.|.+||.+++..
T Consensus 232 avD~~GnlyVa~~~~g~I~~~dp~~g~~ 259 (314)
T d1pjxa_ 232 DFDEDNNLLVANWGSSHIEVFGPDGGQP 259 (314)
T ss_dssp EEBTTCCEEEEEETTTEEEEECTTCBSC
T ss_pred EEecCCcEEEEEcCCCEEEEEeCCCCEE
Confidence 9999999888877889999999876653
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.36 E-value=5.4e-05 Score=53.55 Aligned_cols=151 Identities=6% Similarity=0.071 Sum_probs=98.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC------CcccEEEEEEeeCCC-EEEE-ecCCCeEEEEEcCCcccc
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF------SEEELTSVVLMKNGR-KVVC-GSQSGTVLLYSWGYFKDC 72 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~------~~~~i~~l~~~~~~~-~l~~-~~~d~~i~v~d~~~~~~~ 72 (203)
|+++|+++.+++-...+.|++||.. +..+..+.. .......+++.++.. .+++ .+.++.|.+++.. +..
T Consensus 28 vavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--g~~ 104 (279)
T d1q7fa_ 28 VAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY--GQF 104 (279)
T ss_dssp EEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT--SCE
T ss_pred EEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc--ccc
Confidence 4678888877776677889999865 555554421 112345566665543 3333 3345677777653 455
Q ss_pred ceeeecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC-CcceEEEEEeCCCCeEEEEeCCCcEEEE
Q 028802 73 SDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS-EYPIESLALSHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i~iw 150 (203)
...+..........+ +.+++.++++....+.+.+++. .++.+..+.... ......+++.++++.+++....+.|++|
T Consensus 105 ~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~ 183 (279)
T d1q7fa_ 105 VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVF 183 (279)
T ss_dssp EEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEE
T ss_pred eeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEeeeccccceeee
Confidence 554433123445566 7889998888888888888885 456665552221 2257889999999888888888999999
Q ss_pred eCCCc
Q 028802 151 DLDDI 155 (203)
Q Consensus 151 d~~~~ 155 (203)
+....
T Consensus 184 d~~G~ 188 (279)
T d1q7fa_ 184 NYEGQ 188 (279)
T ss_dssp ETTCC
T ss_pred ecCCc
Confidence 97654
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.26 E-value=0.00014 Score=50.46 Aligned_cols=133 Identities=13% Similarity=0.106 Sum_probs=78.5
Q ss_pred eEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCC-C--eEEEEEcCCccccceeeecCCCCceeEE-EeeCCC
Q 028802 18 TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS-G--TVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDED 93 (203)
Q Consensus 18 ~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d-~--~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~ 93 (203)
.|+|.|.......... .+...+.+.+|||||+.|+..... + .+.+.+.. ......+.. +....... |+|+|.
T Consensus 20 ~l~i~d~dG~~~~~l~-~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~spdg~ 95 (269)
T d2hqsa1 20 ELRVSDYDGYNQFVVH-RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLA--NGAVRQVAS-FPRHNGAPAFSPDGS 95 (269)
T ss_dssp EEEEEETTSCSCEEEE-EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT--TCCEEEEEC-CSSCEEEEEECTTSS
T ss_pred EEEEEcCCCCCcEEEe-cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecc--cCceeEEee-eecccccceecCCCC
Confidence 6888887755443333 345678899999999999876543 2 45555554 333444555 56666667 899999
Q ss_pred EEEEEcC-CCc--EEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe-CCC--cEEEEeCCCcc
Q 028802 94 RVITGSE-NGL--ISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDS--MLKLWDLDDIL 156 (203)
Q Consensus 94 ~l~~~~~-dg~--v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~--~i~iwd~~~~~ 156 (203)
.++.... .+. +..+.............. . ......+++++..++..+ .++ .|.+.++.+..
T Consensus 96 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~ 162 (269)
T d2hqsa1 96 KLAFALSKTGSLNLYVMDLASGQIRQVTDGR-S-NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA 162 (269)
T ss_dssp EEEEEECTTSSCEEEEEETTTCCEEECCCCS-S-CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred eeeEeeecCCccceeecccccccceeeeecc-c-cccccccccccccceecccccCCceEeeeeccccc
Confidence 9887654 333 223333333333323222 2 455567788877655444 444 45555655543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.24 E-value=5.1e-05 Score=53.03 Aligned_cols=109 Identities=11% Similarity=0.066 Sum_probs=69.8
Q ss_pred ccccc--CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC----CC--eEEEEEcCCccccc
Q 028802 2 TFAAD--AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ----SG--TVLLYSWGYFKDCS 73 (203)
Q Consensus 2 ~~sp~--~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~----d~--~i~v~d~~~~~~~~ 73 (203)
..||+ |++|+..+. +.|++.|+.+++.. .+..+...+...+|||||+.|+.... .. .|.+++... ...
T Consensus 5 ~~sPdi~G~~v~f~~~-~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~--g~~ 80 (281)
T d1k32a2 5 LLNPDIHGDRIIFVCC-DDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN--GEI 80 (281)
T ss_dssp CEEEEEETTEEEEEET-TEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT--TEE
T ss_pred ccCCCCCCCEEEEEeC-CcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecC--Cce
Confidence 46899 999987654 67999999988764 45556677889999999999886532 22 366666543 222
Q ss_pred eeeec------CCCCceeEE-EeeCCCEEEEEcCC------CcEEEEEccCCce
Q 028802 74 DRFVG------LSPNSVDAL-LKLDEDRVITGSEN------GLISLVGILPNRI 114 (203)
Q Consensus 74 ~~~~~------~~~~~v~~~-~~~~~~~l~~~~~d------g~v~v~d~~~~~~ 114 (203)
..+.. ......... |+|+|+.|+..... ..+...+...+..
T Consensus 81 ~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (281)
T d1k32a2 81 KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINF 134 (281)
T ss_dssp EECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEE
T ss_pred EEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCcee
Confidence 23321 011223445 89999999876432 2345556554444
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.13 E-value=0.00051 Score=49.40 Aligned_cols=151 Identities=12% Similarity=0.117 Sum_probs=88.4
Q ss_pred CcccccCCEEEEEcC----CCeEEEEEcCCCeEEEeec--CCcccEEEEEEeeCCCEEEEecC------CCeEEEEEcCC
Q 028802 1 MTFAADAMKLLGTSG----DGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQ------SGTVLLYSWGY 68 (203)
Q Consensus 1 l~~sp~~~~l~~~~~----d~~i~v~d~~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~~~------d~~i~v~d~~~ 68 (203)
|+++++|+++++... .+.+...+..+........ .....+..+++.++|++.++... .+.+..++..
T Consensus 87 la~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~d- 165 (319)
T d2dg1a1 87 IKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD- 165 (319)
T ss_dssp EEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT-
T ss_pred EEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecc-
Confidence 457778876665432 2334444444443333232 12345778999999987665432 1234444432
Q ss_pred ccccceeeecCCCCceeEE-EeeCCCEEEEE-cCCCcEEEEEccCC-ceeeee------ccCCCcceEEEEEeCCCCeEE
Q 028802 69 FKDCSDRFVGLSPNSVDAL-LKLDEDRVITG-SENGLISLVGILPN-RIIQPI------AEHSEYPIESLALSHDRKFLG 139 (203)
Q Consensus 69 ~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~-~~dg~v~v~d~~~~-~~~~~~------~~~~~~~i~~~~~~~~~~~l~ 139 (203)
+..+..+.. .-.....+ |+|+++.|+.+ +..+.|+.|++... ...... ..........|++.++|+..+
T Consensus 166 -g~~~~~~~~-~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~V 243 (319)
T d2dg1a1 166 -FRTVTPIIQ-NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYV 243 (319)
T ss_dssp -SCCEEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEE
T ss_pred -cceeEEEee-ccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEE
Confidence 333333333 33345667 89999876555 56788999987632 211111 111011356799999999888
Q ss_pred EEeCCCcEEEEeCCC
Q 028802 140 SISHDSMLKLWDLDD 154 (203)
Q Consensus 140 ~~~~d~~i~iwd~~~ 154 (203)
+....+.|.+|+...
T Consensus 244 a~~~~g~V~~~~p~G 258 (319)
T d2dg1a1 244 AMYGQGRVLVFNKRG 258 (319)
T ss_dssp EEETTTEEEEECTTS
T ss_pred EEcCCCEEEEECCCC
Confidence 888899999999653
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.96 E-value=0.0012 Score=46.91 Aligned_cols=136 Identities=12% Similarity=0.052 Sum_probs=85.9
Q ss_pred cccccCCEEEEEcC----CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEE-ecCCCeEEEEEcCCcccc----
Q 028802 2 TFAADAMKLLGTSG----DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSGTVLLYSWGYFKDC---- 72 (203)
Q Consensus 2 ~~sp~~~~l~~~~~----d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-~~~d~~i~v~d~~~~~~~---- 72 (203)
.+.|+|++.++... .+.-.+|.+..++....... -.....++|+++++.++. -+..+.|..|++......
T Consensus 109 ~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~ 187 (295)
T d2ghsa1 109 RMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK 187 (295)
T ss_dssp EECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC
T ss_pred EECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEeeecccccccccc
Confidence 34567765554321 22345555556654433332 334578999999986654 455788999987532111
Q ss_pred cee---eecCCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEe-CCCCeEEEE
Q 028802 73 SDR---FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALS-HDRKFLGSI 141 (203)
Q Consensus 73 ~~~---~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~ 141 (203)
... +.. ..+....+ +..+|++.++.-..+.|..||. .|+.+..+..... .+++++|- ++.+.|+..
T Consensus 188 ~~~~~~~~~-~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~-~~T~~~FGG~d~~~LyvT 258 (295)
T d2ghsa1 188 AEVFIDSTG-IKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGK-QTTCPAFIGPDASRLLVT 258 (295)
T ss_dssp CEEEEECTT-SSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCS-BEEEEEEESTTSCEEEEE
T ss_pred eEEEeccCc-ccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCC-ceEEEEEeCCCCCEEEEE
Confidence 111 122 23445666 7889988887777888999995 6888888877644 68999996 576666543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.85 E-value=0.00012 Score=51.12 Aligned_cols=95 Identities=7% Similarity=0.043 Sum_probs=64.1
Q ss_pred EEeeC--CCEEEEecCCCeEEEEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcC-C-----CcEEEEEccCCce
Q 028802 44 VLMKN--GRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSE-N-----GLISLVGILPNRI 114 (203)
Q Consensus 44 ~~~~~--~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-d-----g~v~v~d~~~~~~ 114 (203)
.++|+ |+.++..+ ++.|.+.|+.. .....+.. +....... |+|||+.|+.... + ..|.+++..+++.
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~--g~~~~Lt~-~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~ 80 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKS--GSTRKIVS-NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI 80 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTT--CCEEEEEC-SSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCC--CCEEEEec-CCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCce
Confidence 46788 99888765 46788888863 33456666 66777777 9999999987643 1 2477788777765
Q ss_pred eeeeccCC-----CcceEEEEEeCCCCeEEEEe
Q 028802 115 IQPIAEHS-----EYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 115 ~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~ 142 (203)
........ ......+.|+|+|+.|+...
T Consensus 81 ~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 113 (281)
T d1k32a2 81 KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD 113 (281)
T ss_dssp EECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred EEeeecCCCccCccccccccccCCCCCEEEEEE
Confidence 54322110 11346788999999988654
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.68 E-value=0.0035 Score=46.57 Aligned_cols=147 Identities=10% Similarity=0.083 Sum_probs=91.1
Q ss_pred ccCCEEEEEc-CCCeEEEEEcCCCeEEEeecC-CcccEEEEEEee--CCCEEEEecCCC------------------eEE
Q 028802 5 ADAMKLLGTS-GDGTLSVCNLRKNTVQTRSEF-SEEELTSVVLMK--NGRKVVCGSQSG------------------TVL 62 (203)
Q Consensus 5 p~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~-~~~~i~~l~~~~--~~~~l~~~~~d~------------------~i~ 62 (203)
+||++|++.. .++.|.+.|+.+.+....++. ....+..+...+ ...+++..+... .+.
T Consensus 97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t 176 (459)
T d1fwxa2 97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 176 (459)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred cceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence 4788887765 578899999999887664433 234567777654 455676655522 355
Q ss_pred EEEcCCccccceeeecCCCCceeEE-EeeCCCEEEEEcCC--------------------------------------Cc
Q 028802 63 LYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSEN--------------------------------------GL 103 (203)
Q Consensus 63 v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d--------------------------------------g~ 103 (203)
++|..+. +....+.- ...+..+ ++|+|+++++.+.+ +.
T Consensus 177 ~ID~~tm-~V~~QV~V--~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eing 253 (459)
T d1fwxa2 177 AVDADKW-EVAWQVLV--SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG 253 (459)
T ss_dssp EEETTTT-EEEEEEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred EEecCCc-eEEEEeee--CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCC
Confidence 6777542 33333332 2344455 89999998887632 11
Q ss_pred EEEEEccCC---ceeeeeccCCCcceEEEEEeCCCCeEEEEe-CCCcEEEEeCCCcc
Q 028802 104 ISLVGILPN---RIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLDDIL 156 (203)
Q Consensus 104 v~v~d~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~ 156 (203)
+.+.|.+.. ..+..+... . ..+.+..+|||+++++++ .+.++.|+|++...
T Consensus 254 V~VVD~~~~~~~~v~~yIPVp-K-sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~ 308 (459)
T d1fwxa2 254 VKVVDGRKEASSLFTRYIPIA-N-NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFD 308 (459)
T ss_dssp EEEEECSGG--CSSEEEEEEE-S-SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHH
T ss_pred ceeecccccCCcceeEEEecC-C-CCCceEECCCCCEEEEeCCcCCcEEEEEehhhh
Confidence 233333321 122223333 2 356789999999987766 78999999997654
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.48 E-value=0.0041 Score=48.21 Aligned_cols=55 Identities=9% Similarity=0.177 Sum_probs=38.6
Q ss_pred EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCC-eEEEEe
Q 028802 88 LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSIS 142 (203)
Q Consensus 88 ~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~ 142 (203)
....+.+++.++.||.++.+|..+|+.+..+.......-.-+.+..+|+ ||++.+
T Consensus 465 l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v~a 520 (560)
T d1kv9a2 465 LSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (560)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred eEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEe
Confidence 3445678888999999999999999999888765331112256667885 555433
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.45 E-value=0.0083 Score=42.33 Aligned_cols=147 Identities=8% Similarity=0.068 Sum_probs=90.1
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeec--C--CcccEEEEEEeeCCCEEEEecC----CCeEEEEEcCCccccc
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE--F--SEEELTSVVLMKNGRKVVCGSQ----SGTVLLYSWGYFKDCS 73 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~--~~~~i~~l~~~~~~~~l~~~~~----d~~i~v~d~~~~~~~~ 73 (203)
++.++|.+++++ . ..|.++|..+++...... . ....++.+.+.|+|++.++... .+.-.+|.+.. +...
T Consensus 65 ~~~~dg~l~va~-~-~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~-g~~~ 141 (295)
T d2ghsa1 65 AKISDSKQLIAS-D-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK-GKVT 141 (295)
T ss_dssp EEEETTEEEEEE-T-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET-TEEE
T ss_pred EEecCCCEEEEE-e-CccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecC-CcEE
Confidence 455677666554 4 458899998886543322 1 1236788999999987766432 23445565543 3332
Q ss_pred eeeecCCCCceeEE-EeeCCCEEEEE-cCCCcEEEEEccCC------ce-e-eeeccCCCcceEEEEEeCCCCeEEEEeC
Q 028802 74 DRFVGLSPNSVDAL-LKLDEDRVITG-SENGLISLVGILPN------RI-I-QPIAEHSEYPIESLALSHDRKFLGSISH 143 (203)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~~~~~l~~~-~~dg~v~v~d~~~~------~~-~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 143 (203)
..+. .......+ ++++++.++.+ +..+.|+.|++... +. + ..+... ......+++..+|++.++.-.
T Consensus 142 ~~~~--~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~-~g~pdG~~vD~~GnlWva~~~ 218 (295)
T d2ghsa1 142 KLFA--DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGI-KGGMDGSVCDAEGHIWNARWG 218 (295)
T ss_dssp EEEE--EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTS-SSEEEEEEECTTSCEEEEEET
T ss_pred EEee--ccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcc-cccccceEEcCCCCEEeeeeC
Confidence 2222 22334455 89999876655 55778988887421 11 1 112222 225778999999988777767
Q ss_pred CCcEEEEeCCC
Q 028802 144 DSMLKLWDLDD 154 (203)
Q Consensus 144 d~~i~iwd~~~ 154 (203)
.+.|..||...
T Consensus 219 ~g~V~~~dp~G 229 (295)
T d2ghsa1 219 EGAVDRYDTDG 229 (295)
T ss_dssp TTEEEEECTTC
T ss_pred CCceEEecCCC
Confidence 78899999654
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.26 E-value=0.006 Score=47.34 Aligned_cols=54 Identities=13% Similarity=0.085 Sum_probs=38.1
Q ss_pred eeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCC-eEEEEe
Q 028802 89 KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSIS 142 (203)
Q Consensus 89 ~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~ 142 (203)
...+.+++.++.|+.++.+|.++|+.+..+.......-.-|.|..+|+ ||++..
T Consensus 472 ~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v~~ 526 (571)
T d2ad6a1 472 YTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMY 526 (571)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred EecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEEEEe
Confidence 345667888999999999999999999888655332222256666885 565433
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.09 E-value=0.018 Score=44.65 Aligned_cols=52 Identities=8% Similarity=0.096 Sum_probs=36.8
Q ss_pred eeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCC-eEEE
Q 028802 89 KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGS 140 (203)
Q Consensus 89 ~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~ 140 (203)
...+.+++.++.||.++.+|.++|+.+..+.......-.-|.|..+|+ ||+.
T Consensus 485 stagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v 537 (573)
T d1kb0a2 485 TTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSV 537 (573)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred EEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEE
Confidence 446778888999999999999999999888655321111245666785 5543
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.01 E-value=0.014 Score=45.39 Aligned_cols=54 Identities=17% Similarity=0.255 Sum_probs=39.3
Q ss_pred EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCC-eEEEE
Q 028802 88 LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSI 141 (203)
Q Consensus 88 ~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~ 141 (203)
.+..+.+++.++.||.++.+|.++|+++..+.......-.-|.|..+|+ |++..
T Consensus 493 lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i~ 547 (582)
T d1flga_ 493 LATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT 547 (582)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred eEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEE
Confidence 4556778888999999999999999999888765332112256777884 55543
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=96.88 E-value=0.021 Score=44.41 Aligned_cols=53 Identities=11% Similarity=0.117 Sum_probs=37.6
Q ss_pred EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCC-eEEE
Q 028802 88 LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGS 140 (203)
Q Consensus 88 ~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~ 140 (203)
.+..+.+++.|+.||.++.+|..+|+.+..+.......-.-|.|..+|+ ||+.
T Consensus 480 lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYvav 533 (596)
T d1w6sa_ 480 MATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAI 533 (596)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred eEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEEEE
Confidence 3456778888999999999999999999888655332112245666875 5553
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.87 E-value=0.033 Score=38.51 Aligned_cols=151 Identities=12% Similarity=-0.110 Sum_probs=88.7
Q ss_pred cccccCCEEEEE-cCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecC--CCeEEEEEcCCccccceeeec
Q 028802 2 TFAADAMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ--SGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~ 78 (203)
++.+.+..|+.+ ...+.|.+.++........+.........+++.|...+|+.... .+.|...++. +.....+..
T Consensus 83 AvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~d--Gs~~~~l~~ 160 (266)
T d1ijqa1 83 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GVDIYSLVT 160 (266)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCCEEEEEC
T ss_pred EEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccC--CCceecccc
Confidence 444445555443 45578888888766544444444566789999986666655443 3456666654 333333332
Q ss_pred CCCCceeEE-EeeCCCEEEEE-cCCCcEEEEEccCCceeeeeccCC-CcceEEEEEeCCCCeEEEE-eCCCcEEEEeCCC
Q 028802 79 LSPNSVDAL-LKLDEDRVITG-SENGLISLVGILPNRIIQPIAEHS-EYPIESLALSHDRKFLGSI-SHDSMLKLWDLDD 154 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~-~~dg~v~v~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~-~~d~~i~iwd~~~ 154 (203)
........+ +.+.+..|+.+ ...+.|...++............. .....++++. +.+|+.. ..++.|...+..+
T Consensus 161 ~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~ 238 (266)
T d1ijqa1 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLT 238 (266)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred cccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCC
Confidence 033455677 78877777766 456788888886443322222221 1135567766 3455444 4678888888766
Q ss_pred cc
Q 028802 155 IL 156 (203)
Q Consensus 155 ~~ 156 (203)
+.
T Consensus 239 g~ 240 (266)
T d1ijqa1 239 GS 240 (266)
T ss_dssp CC
T ss_pred Cc
Confidence 54
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.73 E-value=0.026 Score=40.78 Aligned_cols=149 Identities=12% Similarity=-0.031 Sum_probs=82.6
Q ss_pred ccCCEEEEEcCC-----C------eEEEEEcCCCeEE--Eee-cCCcccEEEEEEeeCCCEEEEecCC-CeEEEEEcCCc
Q 028802 5 ADAMKLLGTSGD-----G------TLSVCNLRKNTVQ--TRS-EFSEEELTSVVLMKNGRKVVCGSQS-GTVLLYSWGYF 69 (203)
Q Consensus 5 p~~~~l~~~~~d-----~------~i~v~d~~~~~~~--~~~-~~~~~~i~~l~~~~~~~~l~~~~~d-~~i~v~d~~~~ 69 (203)
.+|+.++.|+.+ + .+.+||..++.-. ... ..+.......++.+++.+++.|+.+ ..+.+||..+
T Consensus 29 ~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~- 107 (387)
T d1k3ia3 29 TSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSS- 107 (387)
T ss_dssp TTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGG-
T ss_pred eCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCcc-
Confidence 467777777642 1 3678998876321 111 2222223456788999999988764 5899999864
Q ss_pred cccceeeecC--CCCceeEEEeeCCCEEEEEcCC------CcEEEEEccCCceeeeecc--------CCC-----cceEE
Q 028802 70 KDCSDRFVGL--SPNSVDALLKLDEDRVITGSEN------GLISLVGILPNRIIQPIAE--------HSE-----YPIES 128 (203)
Q Consensus 70 ~~~~~~~~~~--~~~~v~~~~~~~~~~l~~~~~d------g~v~v~d~~~~~~~~~~~~--------~~~-----~~i~~ 128 (203)
.....+... ..........++|++++.++.. ..+.+||+.+..-...-.. ... ..-..
T Consensus 108 -~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (387)
T d1k3ia3 108 -DSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAW 186 (387)
T ss_dssp -TEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCC
T ss_pred -CcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeE
Confidence 222222210 1122233357789999988753 3588999876543211000 000 00011
Q ss_pred EEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 129 LALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 129 ~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
+..-++|+.++.++....+.+++..+.
T Consensus 187 ~~~~~~G~~~~~g~~~~~~~~~~~~~~ 213 (387)
T d1k3ia3 187 LFGWKKGSVFQAGPSTAMNWYYTSGSG 213 (387)
T ss_dssp EEECGGGCEEECCSSSEEEEEECSTTC
T ss_pred EEEeCCCCEEEecCcCCcEEecCcccC
Confidence 223356676766666666777666554
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.72 E-value=0.044 Score=37.80 Aligned_cols=152 Identities=9% Similarity=-0.059 Sum_probs=90.8
Q ss_pred cccccCCEEEEE-cCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEE-ecCCCeEEEEEcCCccccceeeecC
Q 028802 2 TFAADAMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-~~~d~~i~v~d~~~~~~~~~~~~~~ 79 (203)
+|.+..+.|+.+ ...+.|+..++........+......+.++++..-+..|+. -...+.|.+.++.. .....+...
T Consensus 42 d~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg--~~~~~l~~~ 119 (263)
T d1npea_ 42 AFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG--TQRRVLFDT 119 (263)
T ss_dssp EEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEECS
T ss_pred EEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC--ceEEEEecc
Confidence 455556666554 34577887777655444344333456788999876666654 44577899999863 222333320
Q ss_pred CCCceeEE-EeeCCCEEEEEcCC---CcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe-CCCcEEEEeCCC
Q 028802 80 SPNSVDAL-LKLDEDRVITGSEN---GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLDD 154 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d---g~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~ 154 (203)
....+..+ ++|...+++..... ..|...++...... .+....-.....+++.+.++.|+.+. ..+.|...++..
T Consensus 120 ~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~-~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g 198 (263)
T d1npea_ 120 GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR-ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ 198 (263)
T ss_dssp SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE-EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE
T ss_pred cccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCce-eeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCC
Confidence 33556777 78877777755432 23444455432222 22222122567899998888776554 667898888876
Q ss_pred cc
Q 028802 155 IL 156 (203)
Q Consensus 155 ~~ 156 (203)
..
T Consensus 199 ~~ 200 (263)
T d1npea_ 199 PG 200 (263)
T ss_dssp EE
T ss_pred CC
Confidence 54
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.70 E-value=0.067 Score=39.63 Aligned_cols=132 Identities=11% Similarity=0.086 Sum_probs=81.3
Q ss_pred EEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCC---------------eEEEEEc-----------------
Q 028802 19 LSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSG---------------TVLLYSW----------------- 66 (203)
Q Consensus 19 i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~---------------~i~v~d~----------------- 66 (203)
+.++|..+.+....+... ..+..+.++++|+++++.+.+. .+.++++
T Consensus 175 ~t~ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eing 253 (459)
T d1fwxa2 175 FTAVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG 253 (459)
T ss_dssp EEEEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred EEEEecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCC
Confidence 567888888777666532 3456789999999988876432 2333333
Q ss_pred ------CCc-c-ccceeeecCCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCc------------eeeeeccCCCc
Q 028802 67 ------GYF-K-DCSDRFVGLSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILPNR------------IIQPIAEHSEY 124 (203)
Q Consensus 67 ------~~~-~-~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-dg~v~v~d~~~~~------------~~~~~~~~~~~ 124 (203)
... + .....+.. ......+ ++|||+++++++. +.+|.|+|++.-. ........ .
T Consensus 254 V~VVD~~~~~~~~v~~yIPV--pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elg-l- 329 (459)
T d1fwxa2 254 VKVVDGRKEASSLFTRYIPI--ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG-L- 329 (459)
T ss_dssp EEEEECSGG--CSSEEEEEE--ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCC-S-
T ss_pred ceeecccccCCcceeEEEec--CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccC-c-
Confidence 210 0 11111221 2234455 8999999987765 8899999986311 11111111 1
Q ss_pred ceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028802 125 PIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 125 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
....-+|...|.-..+.--|..|.-|++...
T Consensus 330 gPLht~fd~~g~aytslfids~v~kw~~~~~ 360 (459)
T d1fwxa2 330 GPLHTAFDGRGNAYTSLFLDSQVVKWNIEDA 360 (459)
T ss_dssp CEEEEEECTTSEEEEEETTTTEEEEEEHHHH
T ss_pred CccccccCCCceEEEEeeccceEEEEecchh
Confidence 3456789888865556668999999998544
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.67 E-value=0.054 Score=38.14 Aligned_cols=103 Identities=10% Similarity=0.072 Sum_probs=62.6
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCC
Q 028802 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 82 (203)
.+|..+.||.-+ ..++.++|+++.+.+..+.-. .+|.-=.|-.+. .|+..+ ...|+-|++.....+.+.+.. |..
T Consensus 70 MhP~~~IiALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~~-~L~lVT-~taVYHW~~~g~s~P~k~fdR-~~~ 144 (327)
T d1utca2 70 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDR-HSS 144 (327)
T ss_dssp ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEESSSS-EEEEEC-SSEEEEEESSSSCCCEEEEEC-CGG
T ss_pred cCCCCcEEEEec-CCeEEEEehhHhhhhceEEcC-CCcEEEEecCCC-EEEEEc-CCceEEEcccCCCCchhhhhh-ccc
Confidence 468888877655 468999999999888777654 356566676544 444333 456999998644455555554 332
Q ss_pred ----ceeEE-EeeCCCEEEEEcC-------CCcEEEEEcc
Q 028802 83 ----SVDAL-LKLDEDRVITGSE-------NGLISLVGIL 110 (203)
Q Consensus 83 ----~v~~~-~~~~~~~l~~~~~-------dg~v~v~d~~ 110 (203)
.|-.- .+++.++++..+- .|.+.+|..+
T Consensus 145 L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~e 184 (327)
T d1utca2 145 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 184 (327)
T ss_dssp GTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT
T ss_pred ccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEec
Confidence 12222 3666666554321 2456666654
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=96.56 E-value=0.11 Score=40.13 Aligned_cols=55 Identities=16% Similarity=-0.005 Sum_probs=37.5
Q ss_pred CcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 102 GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 102 g~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
|.|.-+|+.+|+.+.+..... +..+-.+.-.+..+++++.|+.++.+|.++++.-
T Consensus 444 G~l~AiD~~TG~~~W~~~~~~--~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~l 498 (571)
T d2ad6a1 444 GQIRAFDLTTGKAKWTKWEKF--AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL 498 (571)
T ss_dssp EEEEEECTTTCCEEEEEEESS--CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ccEEEeccCCCceeeEcCCCC--CCCcceeEecCCEEEEECCCCeEEEEECCCCcEE
Confidence 467788888888886664331 2222223334567778899999999999998754
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.41 E-value=0.073 Score=36.64 Aligned_cols=150 Identities=6% Similarity=-0.120 Sum_probs=86.8
Q ss_pred cccccCCEEEEE-cCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCC-C--eEEEEEcCCccccceeee
Q 028802 2 TFAADAMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS-G--TVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 2 ~~sp~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d-~--~i~v~d~~~~~~~~~~~~ 77 (203)
++..-+..|+.+ ...+.|.+.++........+......+..+++.|...+|+..... + .|...++. +.....+.
T Consensus 85 AvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~d--G~~~~~i~ 162 (263)
T d1npea_ 85 ALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD--GTNRRILA 162 (263)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT--SCCCEEEE
T ss_pred EEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCC--CCCceeee
Confidence 344444555433 445678888876554333333334568899999977776654332 2 34444443 33333333
Q ss_pred cCCCCceeEE-EeeCCCEEEEE-cCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEE-EEeCCCcEEEEeCCC
Q 028802 78 GLSPNSVDAL-LKLDEDRVITG-SENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLG-SISHDSMLKLWDLDD 154 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~-~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~iwd~~~ 154 (203)
...-.....+ +.+.+..|+.+ ...+.|...++........+.+. . ...+|++. +.+|+ +-...+.|...|..+
T Consensus 163 ~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~-~-~P~~lav~--~~~lYwtd~~~~~I~~~~~~~ 238 (263)
T d1npea_ 163 QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL-Q-YPFAVTSY--GKNLYYTDWKTNSVIAMDLAI 238 (263)
T ss_dssp CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC-C-SEEEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred eecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCC-C-CcEEEEEE--CCEEEEEECCCCEEEEEECCC
Confidence 2023445667 78877777666 45678988888654443334433 2 34577775 44554 444678888888877
Q ss_pred ccc
Q 028802 155 ILK 157 (203)
Q Consensus 155 ~~~ 157 (203)
+..
T Consensus 239 g~~ 241 (263)
T d1npea_ 239 SKE 241 (263)
T ss_dssp TEE
T ss_pred Ccc
Confidence 654
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.21 E-value=0.081 Score=37.99 Aligned_cols=117 Identities=12% Similarity=-0.033 Sum_probs=68.4
Q ss_pred cEEEEEEeeCCCEEEEecCC-----C------eEEEEEcCCccc-cceeeecCCCCc-eeEEEeeCCCEEEEEcCC-CcE
Q 028802 39 ELTSVVLMKNGRKVVCGSQS-----G------TVLLYSWGYFKD-CSDRFVGLSPNS-VDALLKLDEDRVITGSEN-GLI 104 (203)
Q Consensus 39 ~i~~l~~~~~~~~l~~~~~d-----~------~i~v~d~~~~~~-~~~~~~~~~~~~-v~~~~~~~~~~l~~~~~d-g~v 104 (203)
++.......+++.++.|+.. + .+.+||..+..- ........+... ...++.+++.+++.|+.+ ..+
T Consensus 21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~ 100 (387)
T d1k3ia3 21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT 100 (387)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence 33344444577777777642 1 367899875321 111111101111 222368899999988765 579
Q ss_pred EEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCC------CcEEEEeCCCc
Q 028802 105 SLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD------SMLKLWDLDDI 155 (203)
Q Consensus 105 ~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~ 155 (203)
.+||..+..-...-.......-..++..+||+.++.++.. ..+.+||..+.
T Consensus 101 ~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~ 157 (387)
T d1k3ia3 101 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 157 (387)
T ss_dssp EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred eEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCC
Confidence 9999987654332222211123456778899998888742 35889998765
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=96.06 E-value=0.11 Score=39.84 Aligned_cols=55 Identities=7% Similarity=-0.037 Sum_probs=39.6
Q ss_pred CcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028802 102 GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 102 g~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
|.|.-+|+.+++.+....... +..+-.+.-.+..+++++.||.++.||..+++.-
T Consensus 438 G~l~A~D~~tGk~~W~~~~~~--~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~L 492 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYPT--HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL 492 (560)
T ss_dssp EEEEEEETTTTEEEEEEEESS--SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cceEEEeCCCCeEeeeccCCC--CCCCceeEECCCEEEEECCCCcEEEEECCCCcEe
Confidence 467888999998887765442 2333234445667788899999999999998754
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.58 E-value=0.19 Score=34.43 Aligned_cols=151 Identities=10% Similarity=-0.043 Sum_probs=85.1
Q ss_pred cccccCCEEEEEc-CCCeEEEEEcCCC----eEEEeecCCcccEEEEEEeeCCCEEEEe-cCCCeEEEEEcCCcccccee
Q 028802 2 TFAADAMKLLGTS-GDGTLSVCNLRKN----TVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~~~l~~~~-~d~~i~v~d~~~~----~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~ 75 (203)
+|++..+.|+-+. ..+.|+..++... .....+......+..|++.+-+..|+.+ ...+.|.+.++.. ......
T Consensus 36 d~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g-~~~~~~ 114 (266)
T d1ijqa1 36 DTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG-VKRKTL 114 (266)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS-SSEEEE
T ss_pred EEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCC-ceEEEE
Confidence 4555555554442 3455555554321 1111222223446678888766655554 4567899999863 232233
Q ss_pred eecCCCCceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeEEEEe-CCCcEEEEe
Q 028802 76 FVGLSPNSVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWD 151 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~--dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd 151 (203)
+.. .......+ ++|...+++.... .+.|...++............ -.....+++.+.+..|+.+. ..+.|...+
T Consensus 115 ~~~-~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~-~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~ 192 (266)
T d1ijqa1 115 FRE-NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN-IQWPNGITLDLLSGRLYWVDSKLHSISSID 192 (266)
T ss_dssp EEC-TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EcC-CCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccc-cceeeEEEeeccccEEEEecCCcCEEEEEE
Confidence 333 44556777 7886666665443 345666666533333223222 22578899999887776654 567898888
Q ss_pred CCCc
Q 028802 152 LDDI 155 (203)
Q Consensus 152 ~~~~ 155 (203)
+.+.
T Consensus 193 ~dG~ 196 (266)
T d1ijqa1 193 VNGG 196 (266)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 8664
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.27 E-value=0.11 Score=38.40 Aligned_cols=94 Identities=10% Similarity=0.000 Sum_probs=56.5
Q ss_pred cccccCCEEEEEc-----CCCeEEEEEcCCCeEEE-eecCCcccEEEEEEeeCCCEEEEecCC----------------C
Q 028802 2 TFAADAMKLLGTS-----GDGTLSVCNLRKNTVQT-RSEFSEEELTSVVLMKNGRKVVCGSQS----------------G 59 (203)
Q Consensus 2 ~~sp~~~~l~~~~-----~d~~i~v~d~~~~~~~~-~~~~~~~~i~~l~~~~~~~~l~~~~~d----------------~ 59 (203)
++||++++++.+- .-..|+++|+.+++.+. .+. ......++|.+++..|+....+ .
T Consensus 131 ~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~--~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~ 208 (430)
T d1qfma1 131 AFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQ 208 (430)
T ss_dssp EECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE--EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCC
T ss_pred EecCCCCEEEEEeccccCchheeEEeccCcceecccccc--cccccceEEcCCCCEEEEEEeccccCcccccccccCCcc
Confidence 5789999987642 23479999999997654 222 1222468899999988764322 2
Q ss_pred eEEEEEcCCccccc-eeeecCCCC--ceeEE-EeeCCCEEEEE
Q 028802 60 TVLLYSWGYFKDCS-DRFVGLSPN--SVDAL-LKLDEDRVITG 98 (203)
Q Consensus 60 ~i~v~d~~~~~~~~-~~~~~~~~~--~v~~~-~~~~~~~l~~~ 98 (203)
.+.++.+.+....- ..+.. ... .+..+ .+.++++++..
T Consensus 209 ~v~~h~lgt~~~~d~~v~~e-~d~~~~~~~~~~s~d~~~l~i~ 250 (430)
T d1qfma1 209 KLYYHVLGTDQSEDILCAEF-PDEPKWMGGAELSDDGRYVLLS 250 (430)
T ss_dssp EEEEEETTSCGGGCEEEECC-TTCTTCEEEEEECTTSCEEEEE
T ss_pred eEEEEECCCCcccccccccc-ccCCceEEeeeccCCcceeeEE
Confidence 57777775432221 12222 222 23334 57888887643
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.26 E-value=0.29 Score=34.39 Aligned_cols=145 Identities=14% Similarity=0.076 Sum_probs=85.2
Q ss_pred ccccCCEEEEEc---C----CCeEEEEEcCCCeEEEeecCCcccEEEEEEeeC--C-CEEEEe---cCCCeEEEEEcCCc
Q 028802 3 FAADAMKLLGTS---G----DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN--G-RKVVCG---SQSGTVLLYSWGYF 69 (203)
Q Consensus 3 ~sp~~~~l~~~~---~----d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~--~-~~l~~~---~~d~~i~v~d~~~~ 69 (203)
.+++.+.++..+ . .|.+.+|..+.+ .-+.+++|......+.+..+ . ..++.+ ...+.+++.++...
T Consensus 155 ~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~ 233 (327)
T d1utca2 155 TDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTP 233 (327)
T ss_dssp ECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCC
T ss_pred ECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCC
Confidence 356667654332 2 367889998765 34667777655544433211 1 122222 22367888888642
Q ss_pred ccccee--------eec--CCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCcceEEEEEeCCCCeE
Q 028802 70 KDCSDR--------FVG--LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFL 138 (203)
Q Consensus 70 ~~~~~~--------~~~--~~~~~v~~~-~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 138 (203)
...-.. +.. ....-.-++ .++....++..+.-|.|++||++++.++..-+-..+ .|...+-.....=+
T Consensus 234 ~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~-~iF~~a~~~~~~Gi 312 (327)
T d1utca2 234 PTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGI 312 (327)
T ss_dssp CTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEEETTTTEE
T ss_pred ccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCC-ceEEeccCCCCceE
Confidence 211111 111 011123344 688888999999999999999999999877665534 67655555555556
Q ss_pred EEEeCCCcEEE
Q 028802 139 GSISHDSMLKL 149 (203)
Q Consensus 139 ~~~~~d~~i~i 149 (203)
+.....|.+..
T Consensus 313 ~~VNr~GqVl~ 323 (327)
T d1utca2 313 IGVNRKGQVLS 323 (327)
T ss_dssp EEEETTSEEEE
T ss_pred EEECCCCeEEE
Confidence 66666776543
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=94.92 E-value=0.39 Score=34.20 Aligned_cols=152 Identities=9% Similarity=0.058 Sum_probs=81.5
Q ss_pred cccccCCEEEEEcC------------CCeEEEEEcCCCeE-EEe--ecCC-----cccEEEEEEe--eCCC-EEEEec--
Q 028802 2 TFAADAMKLLGTSG------------DGTLSVCNLRKNTV-QTR--SEFS-----EEELTSVVLM--KNGR-KVVCGS-- 56 (203)
Q Consensus 2 ~~sp~~~~l~~~~~------------d~~i~v~d~~~~~~-~~~--~~~~-----~~~i~~l~~~--~~~~-~l~~~~-- 56 (203)
+..|+|..+++++. .|.|.++|+.+... ... +.+. .-....+.+- +++. +|++..
T Consensus 41 ~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~ 120 (340)
T d1v04a_ 41 EILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHP 120 (340)
T ss_dssp EECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECS
T ss_pred EECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEecc
Confidence 45678876665531 48899999876422 111 1111 1234555543 3454 344432
Q ss_pred -CCCeEEEEEcCCcccccee---eecCCCCceeEE-EeeCCCEEEEEcC---------------CCcEEEEEccCCceee
Q 028802 57 -QSGTVLLYSWGYFKDCSDR---FVGLSPNSVDAL-LKLDEDRVITGSE---------------NGLISLVGILPNRIIQ 116 (203)
Q Consensus 57 -~d~~i~v~d~~~~~~~~~~---~~~~~~~~v~~~-~~~~~~~l~~~~~---------------dg~v~v~d~~~~~~~~ 116 (203)
...+|.+|++......+.- +..........+ +..++.++++-.. -....+|....+....
T Consensus 121 ~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~ 200 (340)
T d1v04a_ 121 GSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRV 200 (340)
T ss_dssp TTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEE
T ss_pred CCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEE
Confidence 3567888888543322221 111012235566 5677776666211 1223344434443332
Q ss_pred eeccCCCcceEEEEEeCCCCeEEEEe-CCCcEEEEeCCCc
Q 028802 117 PIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLDDI 155 (203)
Q Consensus 117 ~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~ 155 (203)
..... . ....|+++|++++|+++. ..+.|++|++...
T Consensus 201 ~~~~l-~-~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~ 238 (340)
T d1v04a_ 201 VAEGF-D-FANGINISPDGKYVYIAELLAHKIHVYEKHAN 238 (340)
T ss_dssp EEEEE-S-SEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred EcCCC-C-ccceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence 23332 2 468899999998876555 6788999998643
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.76 E-value=0.53 Score=34.90 Aligned_cols=48 Identities=13% Similarity=0.175 Sum_probs=34.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEE--Eeec------CCcccEEEEEEeeC
Q 028802 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ--TRSE------FSEEELTSVVLMKN 48 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~v~d~~~~~~~--~~~~------~~~~~i~~l~~~~~ 48 (203)
|+|.|+|++|++--..|.|++++..++... ..+. ..+.....|+++|+
T Consensus 32 la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 32 LLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred EEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 578999998888755799999988776432 2221 12356889999985
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.38 E-value=0.14 Score=39.47 Aligned_cols=75 Identities=17% Similarity=0.146 Sum_probs=48.7
Q ss_pred CeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCcee-EE-EeeCCCE
Q 028802 17 GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD-AL-LKLDEDR 94 (203)
Q Consensus 17 ~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~-~~-~~~~~~~ 94 (203)
|.|.-+|+.+++.+.....+ .++.+-.++..+.+++.++.|+.++.||..+ ++.+-.+.. ...... -+ |..+|+.
T Consensus 466 G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~T-Ge~LW~~~~-~~~~~~~P~ty~~~G~q 542 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKS-GKELWKFQT-GSGIVSPPITWEQDGEQ 542 (582)
T ss_dssp EEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTT-CCEEEEEEC-SSCCCSCCEEEEETTEE
T ss_pred CeEEEEcCCCCcEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCC-CcEeEEEEC-CCCccccCEEEEECCEE
Confidence 67888899999888777543 2222223445677888899999999999987 455544543 222211 13 6678853
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=93.61 E-value=0.82 Score=32.71 Aligned_cols=144 Identities=15% Similarity=0.170 Sum_probs=84.3
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEee----CC--CEEEEec-CC---CeEEEEEcCCccccce
Q 028802 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK----NG--RKVVCGS-QS---GTVLLYSWGYFKDCSD 74 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~----~~--~~l~~~~-~d---~~i~v~d~~~~~~~~~ 74 (203)
|...+++.....+-|++||+. |+.+..+.. +++..+..-. .+ ..+++++ .+ .+|.+|.+......+.
T Consensus 38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~--Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~ 114 (353)
T d1h6la_ 38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYHT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ 114 (353)
T ss_dssp GGGCEEEEEETTSCCEEEETT-CCEEEECCS--SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred cCccEEEEEcCcCCEEEEcCC-CcEEEeccc--CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence 455677777777779999986 666666653 4566655432 22 2244444 22 3677887753333333
Q ss_pred eeecC------CCCceeEE--E-eeC-CC-EEEEEcCCCcEEEEEccC---C----ceeeeeccCCCcceEEEEEeCCCC
Q 028802 75 RFVGL------SPNSVDAL--L-KLD-ED-RVITGSENGLISLVGILP---N----RIIQPIAEHSEYPIESLALSHDRK 136 (203)
Q Consensus 75 ~~~~~------~~~~v~~~--~-~~~-~~-~l~~~~~dg~v~v~d~~~---~----~~~~~~~~~~~~~i~~~~~~~~~~ 136 (203)
.+... ....+..+ + ++. +. ++++...+|.+..|.+.. + +.+..+.... .+..+++.+...
T Consensus 115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~--q~EGCVvDde~~ 192 (353)
T d1h6la_ 115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNS--QTEGMAADDEYG 192 (353)
T ss_dssp ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSS--CEEEEEEETTTT
T ss_pred cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCC--ccceEEEeCCCC
Confidence 22210 11123444 3 554 44 445566688888887642 2 2344554442 688999999988
Q ss_pred eEEEEeCCCcEEEEeCC
Q 028802 137 FLGSISHDSMLKLWDLD 153 (203)
Q Consensus 137 ~l~~~~~d~~i~iwd~~ 153 (203)
.|+.+-.+.-|..+++.
T Consensus 193 ~LyisEE~~Giw~~~a~ 209 (353)
T d1h6la_ 193 SLYIAEEDEAIWKFSAE 209 (353)
T ss_dssp EEEEEETTTEEEEEESS
T ss_pred cEEEecCccceEEEEec
Confidence 99888877666555543
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=93.48 E-value=0.28 Score=37.70 Aligned_cols=74 Identities=15% Similarity=0.098 Sum_probs=46.8
Q ss_pred CeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecCCCCcee-EE-EeeCCC
Q 028802 17 GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD-AL-LKLDED 93 (203)
Q Consensus 17 ~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~-~~-~~~~~~ 93 (203)
|.|.-||+.+++.+...+... +...-..+-.+.+|++++.|+.++.||..+ ++.+-.+.. ...... -+ |..+|+
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~T-Ge~LW~~~~-~~~~~~~P~ty~~~Gk 532 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAAT-GEKLWEAPT-GTGVVAAPSTYMVDGR 532 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTT-CCEEEEEEC-SSCCCSCCEEEEETTE
T ss_pred ccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCC-CcEeEEEEC-CCCccccCEEEEECCE
Confidence 468888999998887775432 222222344678888899999999999986 455545543 222111 12 556776
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.19 E-value=1 Score=32.57 Aligned_cols=132 Identities=10% Similarity=0.014 Sum_probs=73.9
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCC---------CeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc
Q 028802 2 TFAADAMKLLGTSGDGTLSVCNLRK---------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC 72 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~v~d~~~---------~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 72 (203)
++++...++++|+.++ +.|..+.. .......+..-..|..++|+.+ .|++. .++.+..+++... ..
T Consensus 43 AVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~~~~l-~~ 117 (381)
T d1xipa_ 43 DISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLDLEEL-SE 117 (381)
T ss_dssp EEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEEESSST-TC
T ss_pred EEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEEeecc-cc
Confidence 5566666777776654 56665321 0000001111235888999744 45554 3466888887532 22
Q ss_pred ceeeecCCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeee------ccCCCcceEEEEEeCCCCeEEEEe
Q 028802 73 SDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPI------AEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~v~d~~~~~~~~~~------~~~~~~~i~~~~~~~~~~~l~~~~ 142 (203)
...... ...++..+ .+....++....++.+.++++..++..... ... . .+.+++|++.|..++++.
T Consensus 118 ~~~~~~-~~~~~~~~-~~~p~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~-~-~~~~v~ws~kgkq~v~~~ 189 (381)
T d1xipa_ 118 FRTVTS-FEKPVFQL-KNVNNTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVT-N-SQLAVLLKDRSFQSFAWR 189 (381)
T ss_dssp EEEEEE-CSSCEEEE-EECSSEEEEEETTSEEEEEETTTCCEEEEEESEEEEEEC-S-SEEEEEETTSCEEEEEEE
T ss_pred cccccc-ccccccce-ecCCceeEEEecCCCEEEEEeccCccccccCCcceEEec-C-CceEEEEeCCcEEEEEeC
Confidence 222222 23445555 233356777778889999998877543221 111 2 578888888888877764
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=92.98 E-value=0.63 Score=35.87 Aligned_cols=111 Identities=11% Similarity=0.031 Sum_probs=64.2
Q ss_pred CCEEEEEcCCCeEEEEEc-CCCeEEEeecCCcc-----------cEEEEEEeeC----CCEEEEecCCCeEEEEEcCCcc
Q 028802 7 AMKLLGTSGDGTLSVCNL-RKNTVQTRSEFSEE-----------ELTSVVLMKN----GRKVVCGSQSGTVLLYSWGYFK 70 (203)
Q Consensus 7 ~~~l~~~~~d~~i~v~d~-~~~~~~~~~~~~~~-----------~i~~l~~~~~----~~~l~~~~~d~~i~v~d~~~~~ 70 (203)
+.++++++..+.|...|. .+|+.+..+..... ..+.+++.++ ...++.++.++.|.-.|..+.
T Consensus 63 g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG- 141 (596)
T d1w6sa_ 63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG- 141 (596)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC-
T ss_pred CEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccC-
Confidence 333344455678888887 57888887642110 0133555442 346888888999999998764
Q ss_pred ccceeeecCCCC---ceeEE-EeeCCCEEEEEcC------CCcEEEEEccCCceeeeec
Q 028802 71 DCSDRFVGLSPN---SVDAL-LKLDEDRVITGSE------NGLISLVGILPNRIIQPIA 119 (203)
Q Consensus 71 ~~~~~~~~~~~~---~v~~~-~~~~~~~l~~~~~------dg~v~v~d~~~~~~~~~~~ 119 (203)
+.+..+...... .++.. .- -+..++.+.. .|.|+-+|+.+|+.+..+.
T Consensus 142 ~~~w~~~~~d~~~~~~~t~~P~v-~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~ 199 (596)
T d1w6sa_ 142 ETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (596)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred ceeccccccccccccccccCCcE-ECCeEEEeeccccccccCceEEEECCCCcEEEEee
Confidence 444333210111 11111 11 2334555543 4889999999999987653
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.08 E-value=1.5 Score=31.88 Aligned_cols=99 Identities=10% Similarity=-0.014 Sum_probs=58.9
Q ss_pred cEEEEEEeeCCCEEEEec-C----CCeEEEEEcCCccccce-eeecCCCCceeEE-EeeCCCEEEEEcCC----------
Q 028802 39 ELTSVVLMKNGRKVVCGS-Q----SGTVLLYSWGYFKDCSD-RFVGLSPNSVDAL-LKLDEDRVITGSEN---------- 101 (203)
Q Consensus 39 ~i~~l~~~~~~~~l~~~~-~----d~~i~v~d~~~~~~~~~-~~~~~~~~~v~~~-~~~~~~~l~~~~~d---------- 101 (203)
.+...+++|++++++.+- . -..++++|+.+. ..+. .+.. .....+ |.+++..|+....+
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg-~~~~~~i~~---~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~ 201 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA-KELPDVLER---VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT-EEEEEEEEE---ECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccCcc-eeccccccc---ccccceEEcCCCCEEEEEEeccccCcccccc
Confidence 345667899999887532 2 347999999864 3332 2222 112345 89999887754322
Q ss_pred ------CcEEEEEccCCce--eeeeccCCC-cceEEEEEeCCCCeEEEE
Q 028802 102 ------GLISLVGILPNRI--IQPIAEHSE-YPIESLALSHDRKFLGSI 141 (203)
Q Consensus 102 ------g~v~v~d~~~~~~--~~~~~~~~~-~~i~~~~~~~~~~~l~~~ 141 (203)
..|..+.+.+... ...+..... ..+..+..++++++++..
T Consensus 202 ~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~ 250 (430)
T d1qfma1 202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLS 250 (430)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred cccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEE
Confidence 2577777766532 223332211 246667789999987643
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.19 E-value=3.3 Score=27.60 Aligned_cols=105 Identities=10% Similarity=-0.021 Sum_probs=49.1
Q ss_pred CCCEEEEecCC-----CeEEEEEcCCccccceeeecC-CCCceeEEEeeCCCEEEEEcCC-----CcEEEEEccCCceee
Q 028802 48 NGRKVVCGSQS-----GTVLLYSWGYFKDCSDRFVGL-SPNSVDALLKLDEDRVITGSEN-----GLISLVGILPNRIIQ 116 (203)
Q Consensus 48 ~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~l~~~~~d-----g~v~v~d~~~~~~~~ 116 (203)
+...++.++.+ ..+..||.... ........ ......+.....+..++.++.+ ..+..||..+.+...
T Consensus 148 ~~~~~~~GG~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~ 225 (288)
T d1zgka1 148 NRLLYAVGGFDGTNRLNSAECYYPERN--EWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTF 225 (288)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred eecceEecCcccccccceEEEeecccc--ccccccccccccccccccceeeeEEEecCccccccccceeeeeecceeeec
Confidence 44455555543 35677776532 22222110 1111122233455666666543 346777876654432
Q ss_pred eeccCCCcceEEEEEeCCCCeEEEEeCCC-----cEEEEeCCCc
Q 028802 117 PIAEHSEYPIESLALSHDRKFLGSISHDS-----MLKLWDLDDI 155 (203)
Q Consensus 117 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~ 155 (203)
.-.......-.+++ ..+++.++.|+.++ .|.+||+.+.
T Consensus 226 ~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~v~~yd~~~~ 268 (288)
T d1zgka1 226 VAPMKHRRSALGIT-VHQGRIYVLGGYDGHTFLDSVECYDPDTD 268 (288)
T ss_dssp CCCCSSCCBSCEEE-EETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred ccCccCcccceEEE-EECCEEEEEecCCCCeecceEEEEECCCC
Confidence 21111110112222 23677777776543 3788888764
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.77 E-value=4.7 Score=28.94 Aligned_cols=85 Identities=14% Similarity=0.003 Sum_probs=46.8
Q ss_pred EEEEEcCCCeEEEEEcCCCeEEEeecCCcccEEEEEEeeCCCEEEEecCCCeEEEEEcCCcccccee------eecCCCC
Q 028802 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR------FVGLSPN 82 (203)
Q Consensus 9 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~------~~~~~~~ 82 (203)
.|+.. .++.+.+++...-...........++..+.++|. .++....++.+.++++... ..... +.. ..
T Consensus 98 ~l~v~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~-~~~~~~~~v~~~~~--~~ 171 (381)
T d1xipa_ 98 QVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTK-STKQLAQNVTSFDV--TN 171 (381)
T ss_dssp EEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTC-CEEEEEESEEEEEE--CS
T ss_pred EEEEE-eCCCEEEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccC-ccccccCCcceEEe--cC
Confidence 34443 3356777776543222222223456778887764 5666667889999998643 21111 111 23
Q ss_pred ceeEE-EeeCCCEEEEEc
Q 028802 83 SVDAL-LKLDEDRVITGS 99 (203)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~ 99 (203)
.+.++ |++.|+.++++.
T Consensus 172 ~~~~v~ws~kgkq~v~~~ 189 (381)
T d1xipa_ 172 SQLAVLLKDRSFQSFAWR 189 (381)
T ss_dssp SEEEEEETTSCEEEEEEE
T ss_pred CceEEEEeCCcEEEEEeC
Confidence 45555 666666666653
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=81.71 E-value=7.8 Score=28.31 Aligned_cols=32 Identities=6% Similarity=0.016 Sum_probs=25.5
Q ss_pred cccEEEEEEeeCCCEEEEecCCCeEEEEEcCC
Q 028802 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY 68 (203)
Q Consensus 37 ~~~i~~l~~~~~~~~l~~~~~d~~i~v~d~~~ 68 (203)
-...++|+|.|++++|++--..|.|++++...
T Consensus 26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~ 57 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERATGKILRVNPES 57 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTT
T ss_pred CCCceEEEEeCCCeEEEEEecCCEEEEEECCC
Confidence 34578999999999888775579999887653
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=80.92 E-value=7.1 Score=27.35 Aligned_cols=102 Identities=9% Similarity=0.152 Sum_probs=55.1
Q ss_pred EEEEEEeeCCCEEEEecC------------CCeEEEEEcCCccccceeeecC-CC-----CceeEE--E-eeCCCE-EEE
Q 028802 40 LTSVVLMKNGRKVVCGSQ------------SGTVLLYSWGYFKDCSDRFVGL-SP-----NSVDAL--L-KLDEDR-VIT 97 (203)
Q Consensus 40 i~~l~~~~~~~~l~~~~~------------d~~i~v~d~~~~~~~~~~~~~~-~~-----~~v~~~--~-~~~~~~-l~~ 97 (203)
.-.|...|+|..+++++. .|.|.++|+.........+.-. .. -....+ + ..++.. |++
T Consensus 37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v 116 (340)
T d1v04a_ 37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 116 (340)
T ss_dssp CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence 446777888877766542 4889999987533322222210 11 112222 2 345553 333
Q ss_pred Ec---CCCcEEEEEccCCc-e---eeeeccCCCcceEEEEEeCCCCeEEEE
Q 028802 98 GS---ENGLISLVGILPNR-I---IQPIAEHSEYPIESLALSHDRKFLGSI 141 (203)
Q Consensus 98 ~~---~dg~v~v~d~~~~~-~---~~~~~~~~~~~i~~~~~~~~~~~l~~~ 141 (203)
.. ...+|-++++.... . +.++..........+++..++.+++|-
T Consensus 117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tn 167 (340)
T d1v04a_ 117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATN 167 (340)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEE
T ss_pred EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEec
Confidence 32 34567788775432 1 222333322357788888888888873
|