Citrus Sinensis ID: 028807

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200---
Protein Sequence
MGRLNYLAMKTDDQVAAELISSDFNELKIAAKKLVNDATRLGGLGFGTSFLKWVASFAAIYLLILDRTNWRSNMLTALLVPYIFFSFPSVLFNFFRGEVGRWIAFIAVVLRLFFPRHFPDWLDMPGSLILLLVVAPSFFAHTLKDSWVGVVICLLIGCYLLQEHIRASGGFRNSFTQGHGISNTLGIVLLLVYPVWALVLHLI
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccHHHEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcHHcccccccHHHHHHHHHHHcHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mgrlnylamkTDDQVAAELISSDFNELKIAAKKLVNDatrlgglgfGTSFLKWVASFAAIYLLILDRTNWRSNMLTALLVPyiffsfpsvlFNFFRGEVGRWIAFIAVVLRLffprhfpdwldmpgSLILLLVVApsffahtlkdSWVGVVICLLIGCYLLQEhirasggfrnsftqghgisNTLGIVLLLVYPVWALVLHLI
Flexible Loop (DISEMBL)
MGRLNYLAMKTDDQVAAELISSDFNELKIAAKKLVNDATRLGGLGFGTSFLKWVASFAAIYLLILDRTNWRSNMLTALLVPYIFFSFPSVLFNFFRGEVGRWIAFIAVVLRLFFPRHFPDWLDMPGSLILLLVVAPSFFAHTLKDSWVGVVICLLIGCYLLQEHIRASGGFRNSFTQGHGISNTLGIVLLLVYPVWALVLHLI
Low Complexity Region (SEG)
MGRLNYLAMKTDDQVAAELISSDFNELKIAAKKLVNDATRLGGLGFGTSFLKWVASFAAIYLLILDRTNWRSNMLTALLVPYIffsfpsvlfnffRGEVGRWIAFIAVVLRLFFPRHFPDWLDMPGSLILLLVVAPSFFAHTLKDSWVGVVICLLIGCYLLQEHIRASGGFRNSFTQGHGISNTLGIVLLLVYPVWALVLHLI
Disordered region (IsUnstruct)
******L*****DQVAAELISSDFNELKIAAKKLVNDATRLGGLGFGTSFLKWVASFAAIYLLILDRTNWRSNMLTALLVPYIFFSFPSVLFNFFRGEVGRWIAFIAVVLRLFFPRHFPDWLDMPGSLILLLVVAPSFFAHTLKDSWVGVVICLLIGCYLLQEHIRASGGFRNSFTQGHGISNTLGIVLLLVYPVWALVLHL*
Disordered Region (DISOPRED)
******************LISSDFNELKIAAKKLVNDATRLGGLGFGTSFLKWVASFAAIYLLILDRTNWRSNMLTALLVPYIFFSFPSVLFNFFRGEVGRWIAFIAVVLRLFFPRHFPDWLDMPGSLILLLVVAPSFFAHTLKDSWVGVVICLLIGCYLLQEHIRASGGFRNSFTQGHGISNTLGIVLLLVYPVWALVLHLI
Disordered Region (DISEMBL)
MGRLNYLAMKTDDQVAAELISSDFNELKIAAKKLVNDATRLGGLGFGTSFLKWVASFAAIYLLILDRTNWRSNMLTALLVPYIFFSFPSVLFNFFRGEVGRWIAFIAVVLRLFFPRHFPDWLDMPGSLILLLVVAPSFFAHTLKDSWVGVVICLLIGCYLLQEHIRASGGFRNSFTQGHGISNTLGIVLLLVYPVWALVLHLI
Disordered Region (DISPRO)
****NYLAMKTDDQVAAELISSDFNELKIAAKKLVNDATRLGGLGFGTSFLKWVASFAAIYLLILDRTNWRSNMLTALLVPYIFFSFPSVLFNFFRGEVGRWIAFIAVVLRLFFPRHFPDWLDMPGSLILLLVVAPSFFAHTLKDSWVGVVICLLIGCYLLQEHIRASGGFRNSFTQGHGISNTLGIVLLLVYPVWALVLHLI
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRLNYLAMKTDDQVAAELISSDFNELKIAAKKLVNDATRLGGLGFGTSFLKWVASFAAIYLLILDRTNWRSNMLTALLVPYIFFSFPSVLFNFFRGEVGRWIAFIAVVLRLFFPRHFPDWLDMPGSLILLLVVAPSFFAHTLKDSWVGVVICLLIGCYLLQEHIRASGGFRNSFTQGHGISNTLGIVLLLVYPVWALVLHLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	203	2.2.26 [Sep-21-2011]
Q9SVL6	203	Cold-regulated 413 plasma	yes	no	1.0	1.0	0.724	3e-86
O23164	202	Cold-regulated 413 plasma	no	no	0.990	0.995	0.653	2e-75
Q9XIM7	197	Cold-regulated 413 plasma	no	no	0.945	0.974	0.640	2e-65
O64834	189	Cold-regulated 413 plasma	no	no	0.827	0.888	0.417	5e-34
F4I1G5	226	Cold-regulated 413 inner	no	no	0.793	0.712	0.260	1e-09
Q94AL8	225	Cold-regulated 413 inner	no	no	0.793	0.715	0.247	4e-09

>sp|Q9SVL6|CRPM2_ARATH Cold-regulated 413 plasma membrane protein 2 OS=Arabidopsis thaliana GN=COR413PM2 PE=2 SV=1

 Score =  317 bits (812), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 147/203 (72%), Positives = 178/203 (87%)

Query: 1   MGRLNYLAMKTDDQVAAELISSDFNELKIAAKKLVNDATRLGGLGFGTSFLKWVASFAAI 60
           MGR++YLAMKTDD     L++SD  ELK+AAKKL +D ++LGGLGFG SFLK++ASFAAI
Sbjct: 1   MGRMDYLAMKTDDVDTVALVNSDMEELKVAAKKLFSDVSKLGGLGFGVSFLKFLASFAAI 60

Query: 61  YLLILDRTNWRSNMLTALLVPYIFFSFPSVLFNFFRGEVGRWIAFIAVVLRLFFPRHFPD 120
           YLLILDRTNW++ MLT+LL+PYIF S PSV+FNF  G+VG+WIAF+AVVLRLFFP+HFPD
Sbjct: 61  YLLILDRTNWKTKMLTSLLIPYIFLSLPSVIFNFLSGDVGKWIAFVAVVLRLFFPKHFPD 120

Query: 121 WLDMPGSLILLLVVAPSFFAHTLKDSWVGVVICLLIGCYLLQEHIRASGGFRNSFTQGHG 180
           WL+MPGSLILLLVV+P F AH ++ +W+G VI L IGCYLLQEHIRASGGFRNSFTQ  G
Sbjct: 121 WLEMPGSLILLLVVSPHFLAHHIRGTWIGTVISLFIGCYLLQEHIRASGGFRNSFTQPRG 180

Query: 181 ISNTLGIVLLLVYPVWALVLHLI 203
           +SNTLGI+LLLVYPVWAL++ ++
Sbjct: 181 VSNTLGIILLLVYPVWALIVRVM 203

Arabidopsis thaliana (taxid: 3702)

>sp|O23164|CRPM4_ARATH Cold-regulated 413 plasma membrane protein 4 OS=Arabidopsis thaliana GN=At4g37220 PE=2 SV=2

 Score =  281 bits (720), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 132/202 (65%), Positives = 164/202 (81%), Gaps = 1/202 (0%)

Query: 1   MGRLNYLAMKTDDQVAAELISSDFNELKIAAKKLVNDATRLGGLGFGTSFLKWVASFAAI 60
           MGR  +LAMKT++  AA LI+SD NE   AAKKLV D   LGG+GFGTS L+W AS  AI
Sbjct: 1   MGRGEFLAMKTEEN-AANLINSDMNEFVAAAKKLVKDVGMLGGVGFGTSVLQWAASIFAI 59

Query: 61  YLLILDRTNWRSNMLTALLVPYIFFSFPSVLFNFFRGEVGRWIAFIAVVLRLFFPRHFPD 120
           YLLILDRTNW++ MLT LLVPYIFF+ PSV+F FF G+ G+WIA IA+++RLFFP+ FP+
Sbjct: 60  YLLILDRTNWKTKMLTTLLVPYIFFTLPSVIFQFFSGDFGKWIALIAIIVRLFFPKEFPE 119

Query: 121 WLDMPGSLILLLVVAPSFFAHTLKDSWVGVVICLLIGCYLLQEHIRASGGFRNSFTQGHG 180
           WL++P +LIL++VV+PS  A TL++SWVG VICL+I CYL  EHI+ASGGF+NSFTQ +G
Sbjct: 120 WLEIPVALILIVVVSPSLIAWTLRESWVGAVICLVIACYLFHEHIKASGGFKNSFTQKNG 179

Query: 181 ISNTLGIVLLLVYPVWALVLHL 202
           ISNT+GIV LLVYPVW +  H+
Sbjct: 180 ISNTIGIVALLVYPVWTIFFHI 201

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIM7|CRPM1_ARATH Cold-regulated 413 plasma membrane protein 1 OS=Arabidopsis thaliana GN=COR413PM1 PE=1 SV=1

 Score =  248 bits (633), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 123/192 (64%), Positives = 159/192 (82%)

Query: 8   AMKTDDQVAAELISSDFNELKIAAKKLVNDATRLGGLGFGTSFLKWVASFAAIYLLILDR 67
           +++ D      +I SDFNEL IAAK L   A  L GLGFGTS L+WVAS AAIYLL+LDR
Sbjct: 5   SLRNDHGTLKAMIGSDFNELTIAAKNLATHAFTLTGLGFGTSVLEWVASIAAIYLLVLDR 64

Query: 68  TNWRSNMLTALLVPYIFFSFPSVLFNFFRGEVGRWIAFIAVVLRLFFPRHFPDWLDMPGS 127
           TNW++NMLT+LL+PYIFFS PS++F  FRGE+G+WIAF+AVV++LFFP+H  ++L++P +
Sbjct: 65  TNWKTNMLTSLLIPYIFFSLPSLIFGIFRGEIGKWIAFVAVVVQLFFPKHAREYLELPVA 124

Query: 128 LILLLVVAPSFFAHTLKDSWVGVVICLLIGCYLLQEHIRASGGFRNSFTQGHGISNTLGI 187
           L+LL VVAP+  A T +DSW+G+ ICL IGCYLLQEHIRASGGFRN+FT+ +GISNT+GI
Sbjct: 125 LVLLAVVAPNLIAGTFRDSWIGLAICLGIGCYLLQEHIRASGGFRNAFTKANGISNTVGI 184

Query: 188 VLLLVYPVWALV 199
           + L+V+PVWAL+
Sbjct: 185 ICLVVFPVWALI 196

Arabidopsis thaliana (taxid: 3702)

>sp|O64834|CRPM3_ARATH Cold-regulated 413 plasma membrane protein 3 OS=Arabidopsis thaliana GN=At2g23680 PE=2 SV=1

 Score =  144 bits (362), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 73/175 (41%), Positives = 112/175 (64%), Gaps = 7/175 (4%)

Query: 25  NELKIAAKKLVNDATRLGGLGFGTSFLKWVASFAAIYLLILDRTNWR--SNMLTALLVPY 82
           NE++  A KL++     G     T FL+W+AS  A++L+ILD+T W+  +N++ +LL PY
Sbjct: 8   NEIQAVAGKLIHS---YGVPVMITLFLRWLASIVAVFLMILDQTKWKYSNNIMASLLAPY 64

Query: 83  IFFSFPSVLFNFFRGEVGRWIAFIAVVLRLFFPRHFPDWLDMPGSLILLLVVAPSFFAHT 142
           +F S P V+F   R  VG+WIA + V+LRLF P HF + L++PG+ ILL+VV PS     
Sbjct: 65  LFSSLPIVIFQVLRNGVGKWIALLTVILRLFLPNHFHESLEIPGATILLIVVTPSDIGAI 124

Query: 143 LKDS--WVGVVICLLIGCYLLQEHIRASGGFRNSFTQGHGISNTLGIVLLLVYPV 195
            +D   + G  +CLL   YL+ +H +A GG +NSFTQ   ++ ++ + +L VYP+
Sbjct: 125 FRDDLRYTGGDVCLLTSFYLINKHTKACGGIKNSFTQKDKVTYSICLWILFVYPI 179

Arabidopsis thaliana (taxid: 3702)

>sp|F4I1G5|CRIM2_ARATH Cold-regulated 413 inner membrane protein 2, chloroplastic OS=Arabidopsis thaliana GN=COR413IM2 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 84/173 (48%), Gaps = 12/173 (6%)

Query: 5   NYLAMKTDDQVAAELISSDFNELKIAAKKLVNDATRLGGLGFGTSFLKWVASFAAIYLLI 64
           N L +  D Q  A  +S+   + +     +V  AT +         L+W+++ + + L+ 
Sbjct: 45  NPLRLSADRQRTAT-VSARAEKRRKRGSSVVCYATPM----LSVHNLQWISTISCVALMF 99

Query: 65  LDRTNWRSNMLTALLVPYIFFSFPSVLFNFFRGEVGRWIAFIAVVLRLFFPRHFPDWLDM 124
              T    +     +VP      P  + ++ +GE G W AF+A++ RLFF   FP  L++
Sbjct: 100 ARGTGIHKS----FVVPLFALQAPMGIVSWMKGEYGIWAAFLALLTRLFF--SFPVELEL 153

Query: 125 PGSLILLLVVAPSFFAHTLKDSWVGVVICLLIGCYLLQEHIRASGGFRNSFTQ 177
           P   +LL++VAP +   +++    G ++ L I C+L  +H   +G  + +F Q
Sbjct: 154 PFIALLLVIVAP-YQVMSIRGKQEGAILSLAISCFLAFQHFSRAGTLQKAFDQ 205

Arabidopsis thaliana (taxid: 3702)

>sp|Q94AL8|CRIM1_ARATH Cold-regulated 413 inner membrane protein 1, chloroplastic OS=Arabidopsis thaliana GN=COR413IM1 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 85/174 (48%), Gaps = 13/174 (7%)

Query: 5   NYLAMKTDDQVAAELISSDFNELKIAAKKLVNDATRLGGLGFGTSFLKWVASFAAIYLLI 64
           N L +  D Q  A  +S+   + +     +V  A  +       + L+W+++ + + L++
Sbjct: 45  NPLRLSGDRQRTAT-VSTRVEKRRKRGSSVVCYAAPISA-----NSLQWISTISCLALML 98

Query: 65  LDRTNWRSNMLTALLVPYIFFSFPSVLFNFFRGEVGRWIAFIAVVLRLFFPRHFPDWLDM 124
              T     +  +++VP      PS +  + +GE G W AF+A++ RLFF   FP  L++
Sbjct: 99  ARGTG----IHKSVVVPLFALHAPSSIVAWIKGEYGVWAAFLALIARLFFT--FPGELEL 152

Query: 125 PGSLILLLVVAPSFFAHTLKDSWVGVVICLLIGCYLLQEHIRASGGFRNSFTQG 178
           P   +LL++VAP +    ++    G +I + I  +L  +H   +G    ++ +G
Sbjct: 153 PFIALLLVIVAP-YQVMNIRGKQEGAIIAIAISGFLAFQHFSRAGSLEKAYEKG 205

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
255562759	207	COR413-PM2, putative [Ricinus communis]	1.0	0.980	0.835	1e-97
224094602	203	predicted protein [Populus trichocarpa]	1.0	1.0	0.847	3e-97
225468763	202	PREDICTED: uncharacterized protein LOC10	0.995	1.0	0.807	7e-92
297819786	204	COR413-PM2 [Arabidopsis lyrata subsp. ly	1.0	0.995	0.735	3e-85
15230325	203	cold-regulated 413-plasma membrane 2 [Ar	1.0	1.0	0.724	2e-84
255556173	202	COR413-PM2, putative [Ricinus communis]	0.995	1.0	0.733	2e-84
449448542	202	PREDICTED: cold-regulated 413 plasma mem	0.975	0.980	0.748	1e-83
225428596	202	PREDICTED: uncharacterized protein LOC10	0.995	1.0	0.724	7e-83
356561273	202	PREDICTED: uncharacterized protein LOC10	0.985	0.990	0.738	2e-82
86755972	201	cold acclimation protein COR413-PM1 [Chi	0.980	0.990	0.733	4e-82

>gi|255562759|ref|XP_002522385.1| COR413-PM2, putative [Ricinus communis] gi|223538463|gb|EEF40069.1| COR413-PM2, putative [Ricinus communis]

 Score =  361 bits (926), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 173/207 (83%), Positives = 191/207 (92%), Gaps = 4/207 (1%)

Query: 1   MGRLNYLAMKTDDQVAAE----LISSDFNELKIAAKKLVNDATRLGGLGFGTSFLKWVAS 56
           M R+ YL M TD++V A+    LI SD NELK+AAKKL+NDATRLGGLGFGTSFLKWV+S
Sbjct: 1   MRRIEYLKMSTDNEVTAKGNDNLIQSDINELKVAAKKLINDATRLGGLGFGTSFLKWVSS 60

Query: 57  FAAIYLLILDRTNWRSNMLTALLVPYIFFSFPSVLFNFFRGEVGRWIAFIAVVLRLFFPR 116
           FAAIYLL+LDRTNWR+NMLT+LLVPYIFFS PSVLFNFFRGEVG+WIAFIAVVLRLFFPR
Sbjct: 61  FAAIYLLVLDRTNWRTNMLTSLLVPYIFFSLPSVLFNFFRGEVGKWIAFIAVVLRLFFPR 120

Query: 117 HFPDWLDMPGSLILLLVVAPSFFAHTLKDSWVGVVICLLIGCYLLQEHIRASGGFRNSFT 176
           HFPDWL+MPGSLILLLVVAPSFFAHTLKD+WVGV+ICL I CYLLQEHIRASGGFRNSFT
Sbjct: 121 HFPDWLEMPGSLILLLVVAPSFFAHTLKDNWVGVLICLFISCYLLQEHIRASGGFRNSFT 180

Query: 177 QGHGISNTLGIVLLLVYPVWALVLHLI 203
           Q HGISNT+GI+LL+VYPVWALVLH +
Sbjct: 181 QSHGISNTIGIILLIVYPVWALVLHFV 207

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094602|ref|XP_002310187.1| predicted protein [Populus trichocarpa] gi|222853090|gb|EEE90637.1| predicted protein [Populus trichocarpa]

 Score =  360 bits (923), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 172/203 (84%), Positives = 189/203 (93%)

Query: 1   MGRLNYLAMKTDDQVAAELISSDFNELKIAAKKLVNDATRLGGLGFGTSFLKWVASFAAI 60
           MGR+ +L MKTDD+V+A LI SD NELK+AAKKL+ DA +LGGLGFGTSFLKWVASFAAI
Sbjct: 1   MGRMEFLKMKTDDEVSANLIESDVNELKVAAKKLIKDAAKLGGLGFGTSFLKWVASFAAI 60

Query: 61  YLLILDRTNWRSNMLTALLVPYIFFSFPSVLFNFFRGEVGRWIAFIAVVLRLFFPRHFPD 120
           YLLILDRTNWRSNMLT+LLVPYIFFS PSVLFNFFRGEVGRWIAF+AVVLRLFFPRHFPD
Sbjct: 61  YLLILDRTNWRSNMLTSLLVPYIFFSLPSVLFNFFRGEVGRWIAFVAVVLRLFFPRHFPD 120

Query: 121 WLDMPGSLILLLVVAPSFFAHTLKDSWVGVVICLLIGCYLLQEHIRASGGFRNSFTQGHG 180
           WL+MPGS+ILLLVVAP+FFAHTLK S VGV ICL+I CYLLQEHIRASGGFRNSFTQ HG
Sbjct: 121 WLEMPGSIILLLVVAPNFFAHTLKGSVVGVFICLIIACYLLQEHIRASGGFRNSFTQPHG 180

Query: 181 ISNTLGIVLLLVYPVWALVLHLI 203
           ISNT+GI+LL+VYPVWALVLH +
Sbjct: 181 ISNTVGIILLIVYPVWALVLHFL 203

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225468763|ref|XP_002274881.1| PREDICTED: uncharacterized protein LOC100267774 [Vitis vinifera] gi|298205064|emb|CBI38360.3| unnamed protein product [Vitis vinifera]

 Score =  342 bits (876), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 164/203 (80%), Positives = 185/203 (91%), Gaps = 1/203 (0%)

Query: 1   MGRLNYLAMKTDDQVAAELISSDFNELKIAAKKLVNDATRLGGLGFGTSFLKWVASFAAI 60
           MGR+ YLAMKTD +   +LI+SD N+LKIAAK L+N A++LG LGFGTSFLKWVASF+AI
Sbjct: 1   MGRMEYLAMKTDPE-PTQLINSDLNDLKIAAKNLINHASKLGSLGFGTSFLKWVASFSAI 59

Query: 61  YLLILDRTNWRSNMLTALLVPYIFFSFPSVLFNFFRGEVGRWIAFIAVVLRLFFPRHFPD 120
           YLLILDRTNWR+NMLT+LLVPYIFFS P VLFN  RGEVG+WIAFIA+VLRLFFPRHFPD
Sbjct: 60  YLLILDRTNWRTNMLTSLLVPYIFFSLPPVLFNLLRGEVGKWIAFIAIVLRLFFPRHFPD 119

Query: 121 WLDMPGSLILLLVVAPSFFAHTLKDSWVGVVICLLIGCYLLQEHIRASGGFRNSFTQGHG 180
           WL+MPGSLILLLVVAP+FFAHTL+ S +G VICLLIGCYLLQEHIRASGGFRNSFT+ HG
Sbjct: 120 WLEMPGSLILLLVVAPNFFAHTLRGSLIGTVICLLIGCYLLQEHIRASGGFRNSFTRSHG 179

Query: 181 ISNTLGIVLLLVYPVWALVLHLI 203
           ISNTLGI+LLLVYPVWALV+H +
Sbjct: 180 ISNTLGIILLLVYPVWALVVHFL 202

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819786|ref|XP_002877776.1| COR413-PM2 [Arabidopsis lyrata subsp. lyrata] gi|297323614|gb|EFH54035.1| COR413-PM2 [Arabidopsis lyrata subsp. lyrata]

 Score =  320 bits (819), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 150/204 (73%), Positives = 179/204 (87%), Gaps = 1/204 (0%)

Query: 1   MGRLNYLAMKTDD-QVAAELISSDFNELKIAAKKLVNDATRLGGLGFGTSFLKWVASFAA 59
           MGR++YLAMKTDD    A L++SD  ELK+AAKKL +D ++LGGLGFG SFLK++ASFAA
Sbjct: 1   MGRVDYLAMKTDDVDTVAALVNSDMEELKVAAKKLFSDVSKLGGLGFGVSFLKFIASFAA 60

Query: 60  IYLLILDRTNWRSNMLTALLVPYIFFSFPSVLFNFFRGEVGRWIAFIAVVLRLFFPRHFP 119
           IYLLILDRTNW++ MLT+LL+PYIF S PSV+FNF  GEVG+WIAF+AVVLRLFFP+HFP
Sbjct: 61  IYLLILDRTNWKTKMLTSLLIPYIFLSLPSVIFNFLSGEVGKWIAFVAVVLRLFFPKHFP 120

Query: 120 DWLDMPGSLILLLVVAPSFFAHTLKDSWVGVVICLLIGCYLLQEHIRASGGFRNSFTQGH 179
           DWL+MPGSLILLLVVAP F AH ++ +W+G VI L IGCYLLQEHIRASGGFRNSFTQ  
Sbjct: 121 DWLEMPGSLILLLVVAPHFLAHHIRGTWIGTVISLFIGCYLLQEHIRASGGFRNSFTQPR 180

Query: 180 GISNTLGIVLLLVYPVWALVLHLI 203
           G+SNTLGI+LLLVYPVWAL++ ++
Sbjct: 181 GVSNTLGIILLLVYPVWALIVRVM 204

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230325|ref|NP_190652.1| cold-regulated 413-plasma membrane 2 [Arabidopsis thaliana] gi|75212080|sp|Q9SVL6.1|CRPM2_ARATH RecName: Full=Cold-regulated 413 plasma membrane protein 2; Short=AtCOR413-PM2 gi|10121843|gb|AAG13394.1|AF283005_1 cold acclimation protein WCOR413-like protein beta form [Arabidopsis thaliana] gi|13430786|gb|AAK26015.1|AF360305_1 putative cold acclimation protein [Arabidopsis thaliana] gi|4835234|emb|CAB42912.1| putative cold acclimation protein [Arabidopsis thaliana] gi|15810635|gb|AAL07242.1| putative cold acclimation protein [Arabidopsis thaliana] gi|332645194|gb|AEE78715.1| cold-regulated 413-plasma membrane 2 [Arabidopsis thaliana]

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 147/203 (72%), Positives = 178/203 (87%)

Query: 1   MGRLNYLAMKTDDQVAAELISSDFNELKIAAKKLVNDATRLGGLGFGTSFLKWVASFAAI 60
           MGR++YLAMKTDD     L++SD  ELK+AAKKL +D ++LGGLGFG SFLK++ASFAAI
Sbjct: 1   MGRMDYLAMKTDDVDTVALVNSDMEELKVAAKKLFSDVSKLGGLGFGVSFLKFLASFAAI 60

Query: 61  YLLILDRTNWRSNMLTALLVPYIFFSFPSVLFNFFRGEVGRWIAFIAVVLRLFFPRHFPD 120
           YLLILDRTNW++ MLT+LL+PYIF S PSV+FNF  G+VG+WIAF+AVVLRLFFP+HFPD
Sbjct: 61  YLLILDRTNWKTKMLTSLLIPYIFLSLPSVIFNFLSGDVGKWIAFVAVVLRLFFPKHFPD 120

Query: 121 WLDMPGSLILLLVVAPSFFAHTLKDSWVGVVICLLIGCYLLQEHIRASGGFRNSFTQGHG 180
           WL+MPGSLILLLVV+P F AH ++ +W+G VI L IGCYLLQEHIRASGGFRNSFTQ  G
Sbjct: 121 WLEMPGSLILLLVVSPHFLAHHIRGTWIGTVISLFIGCYLLQEHIRASGGFRNSFTQPRG 180

Query: 181 ISNTLGIVLLLVYPVWALVLHLI 203
           +SNTLGI+LLLVYPVWAL++ ++
Sbjct: 181 VSNTLGIILLLVYPVWALIVRVM 203

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556173|ref|XP_002519121.1| COR413-PM2, putative [Ricinus communis] gi|223541784|gb|EEF43332.1| COR413-PM2, putative [Ricinus communis]

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 149/203 (73%), Positives = 178/203 (87%), Gaps = 1/203 (0%)

Query: 1   MGRLNYLAMKTDDQVAAELISSDFNELKIAAKKLVNDATRLGGLGFGTSFLKWVASFAAI 60
           MG+ +YLAM+T+ Q  +ELI SD  +LKIAAKKL N A +LGGLGFGTSFL+W+ASFAAI
Sbjct: 1   MGKKSYLAMRTE-QATSELIVSDIKDLKIAAKKLANHAIKLGGLGFGTSFLEWIASFAAI 59

Query: 61  YLLILDRTNWRSNMLTALLVPYIFFSFPSVLFNFFRGEVGRWIAFIAVVLRLFFPRHFPD 120
           YLLILDRTNWR+N+LT LL+PYIFFS PS+LF+ FRG++G+WIAF+AV+LRLFFPR FPD
Sbjct: 60  YLLILDRTNWRTNILTGLLIPYIFFSLPSILFSLFRGDLGKWIAFVAVILRLFFPRRFPD 119

Query: 121 WLDMPGSLILLLVVAPSFFAHTLKDSWVGVVICLLIGCYLLQEHIRASGGFRNSFTQGHG 180
           WL+MP +LILL+VVAPS FA TL+ SWVG+ ICL I  YLLQEHIRASGGFRNSFT+ HG
Sbjct: 120 WLEMPAALILLIVVAPSLFASTLRSSWVGLAICLAIAAYLLQEHIRASGGFRNSFTKAHG 179

Query: 181 ISNTLGIVLLLVYPVWALVLHLI 203
           ISNT+GI+LL VYPVWALVL ++
Sbjct: 180 ISNTIGIILLFVYPVWALVLDIL 202

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448542|ref|XP_004142025.1| PREDICTED: cold-regulated 413 plasma membrane protein 2-like [Cucumis sativus] gi|449497763|ref|XP_004160511.1| PREDICTED: cold-regulated 413 plasma membrane protein 2-like [Cucumis sativus]

 Score =  314 bits (805), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 149/199 (74%), Positives = 173/199 (86%), Gaps = 1/199 (0%)

Query: 1   MGRLNYLAMKTDDQVAAELISSDFNELKIAAKKLVNDATRLGGLGFGTSFLKWVASFAAI 60
           MGR+ YLA+ +D  +  ELI+SD +ELKIAA +L+  AT+LGG G GTSF KW+ASFAAI
Sbjct: 1   MGRMAYLALNSD-PLMEELINSDIHELKIAATRLLEHATKLGGKGLGTSFFKWLASFAAI 59

Query: 61  YLLILDRTNWRSNMLTALLVPYIFFSFPSVLFNFFRGEVGRWIAFIAVVLRLFFPRHFPD 120
           YLLILDRTNWR+NMLT+LLVPYIFFS P  +FN  RG+ G+WIAF+AVVLRLFFPRHFPD
Sbjct: 60  YLLILDRTNWRTNMLTSLLVPYIFFSLPQGIFNLLRGDAGKWIAFVAVVLRLFFPRHFPD 119

Query: 121 WLDMPGSLILLLVVAPSFFAHTLKDSWVGVVICLLIGCYLLQEHIRASGGFRNSFTQGHG 180
           WL++PGSLILLLV  P FFAHTL+D W GVVICL+IGCYLLQEHIRASGGFRNS TQ HG
Sbjct: 120 WLEIPGSLILLLVATPGFFAHTLRDHWAGVVICLIIGCYLLQEHIRASGGFRNSLTQTHG 179

Query: 181 ISNTLGIVLLLVYPVWALV 199
           ISNT+GI+LLLV+PVWA+V
Sbjct: 180 ISNTIGIILLLVFPVWAMV 198

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428596|ref|XP_002284722.1| PREDICTED: uncharacterized protein LOC100248690 [Vitis vinifera] gi|297741399|emb|CBI32530.3| unnamed protein product [Vitis vinifera]

 Score =  311 bits (798), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 147/203 (72%), Positives = 177/203 (87%), Gaps = 1/203 (0%)

Query: 1   MGRLNYLAMKTDDQVAAELISSDFNELKIAAKKLVNDATRLGGLGFGTSFLKWVASFAAI 60
           MG+  YLAM+TD     +LISSD  +L  AAKKL   A +LGGLGFGT+FL+W+ASFAAI
Sbjct: 1   MGKKGYLAMRTDTDTT-DLISSDLRDLGNAAKKLATHAIKLGGLGFGTTFLEWLASFAAI 59

Query: 61  YLLILDRTNWRSNMLTALLVPYIFFSFPSVLFNFFRGEVGRWIAFIAVVLRLFFPRHFPD 120
           YLLILDRTNW++N+LTALL+PYIFFS PS+LFNFF G+VG+WIAFIAVVLRLFFP+ FPD
Sbjct: 60  YLLILDRTNWKTNILTALLIPYIFFSLPSILFNFFSGQVGKWIAFIAVVLRLFFPKRFPD 119

Query: 121 WLDMPGSLILLLVVAPSFFAHTLKDSWVGVVICLLIGCYLLQEHIRASGGFRNSFTQGHG 180
           WL+MP +LIL++VVAPS F+ T++  W+G+VICL IGCYLLQEHIRASGGFRNSFTQ HG
Sbjct: 120 WLEMPAALILVIVVAPSLFSSTIRGDWIGLVICLAIGCYLLQEHIRASGGFRNSFTQRHG 179

Query: 181 ISNTLGIVLLLVYPVWALVLHLI 203
           ISN++G++LLLVYPVWALVLH +
Sbjct: 180 ISNSIGLILLLVYPVWALVLHFL 202

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561273|ref|XP_003548907.1| PREDICTED: uncharacterized protein LOC100817084 [Glycine max]

 Score =  310 bits (794), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 150/203 (73%), Positives = 174/203 (85%), Gaps = 3/203 (1%)

Query: 1   MGRL--NYLAMKTDDQVAAELISSDFNELKIAAKKLVNDATRLGGLGFGTSFLKWVASFA 58
           MGR+   Y+AMKTD  V A LI  D  ELK+AA KL++DAT LGG GFGTSF KW+ASFA
Sbjct: 1   MGRILQEYVAMKTD-AVVASLIDYDIEELKVAANKLLHDATMLGGKGFGTSFFKWIASFA 59

Query: 59  AIYLLILDRTNWRSNMLTALLVPYIFFSFPSVLFNFFRGEVGRWIAFIAVVLRLFFPRHF 118
           AIYLLILD TNWR+NMLTALLVPYIFFSFP  LF+F RGEVG+WIAFIAVVLRLFFPRHF
Sbjct: 60  AIYLLILDSTNWRTNMLTALLVPYIFFSFPESLFHFLRGEVGKWIAFIAVVLRLFFPRHF 119

Query: 119 PDWLDMPGSLILLLVVAPSFFAHTLKDSWVGVVICLLIGCYLLQEHIRASGGFRNSFTQG 178
           PDWL++PGS+IL+L VAP  FAH L+++W+G+ I L IGCYLLQEHIRA+GGFRNSFTQ 
Sbjct: 120 PDWLEIPGSMILILTVAPDIFAHRLRNNWIGLAIDLFIGCYLLQEHIRATGGFRNSFTQK 179

Query: 179 HGISNTLGIVLLLVYPVWALVLH 201
           HGISNTLGI+LL+VYP+ A ++H
Sbjct: 180 HGISNTLGILLLIVYPICAFIIH 202

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|86755972|gb|ABD15130.1| cold acclimation protein COR413-PM1 [Chimonanthus praecox]

 Score =  309 bits (791), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 146/199 (73%), Positives = 170/199 (85%)

Query: 5   NYLAMKTDDQVAAELISSDFNELKIAAKKLVNDATRLGGLGFGTSFLKWVASFAAIYLLI 64
            YLAMKTD+  A +LI +D  E+  AAKKLV DAT+LG LG GTS LKWVASFAAIYLLI
Sbjct: 3   EYLAMKTDEWSAQQLIQTDLKEMGKAAKKLVYDATKLGSLGVGTSILKWVASFAAIYLLI 62

Query: 65  LDRTNWRSNMLTALLVPYIFFSFPSVLFNFFRGEVGRWIAFIAVVLRLFFPRHFPDWLDM 124
           LDRTNW++NMLTALLVPYIF S PS+LFN  RGE+G+WIAFIA+VLRLFFPRHFPDWL+M
Sbjct: 63  LDRTNWKTNMLTALLVPYIFLSLPSLLFNILRGEIGKWIAFIAIVLRLFFPRHFPDWLEM 122

Query: 125 PGSLILLLVVAPSFFAHTLKDSWVGVVICLLIGCYLLQEHIRASGGFRNSFTQGHGISNT 184
           PGSLILLLV APSFFA T++ SW+ V+I L IGCYLLQEHIRASGGFRN+FT+ +GI NT
Sbjct: 123 PGSLILLLVAAPSFFADTVRGSWINVLILLAIGCYLLQEHIRASGGFRNAFTKTNGICNT 182

Query: 185 LGIVLLLVYPVWALVLHLI 203
           LGI +L VYP+W +V+H +
Sbjct: 183 LGITVLFVYPIWRVVVHFL 201

Source: Chimonanthus praecox

Species: Chimonanthus praecox

Genus: Chimonanthus

Family: Calycanthaceae

Order: Laurales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
TAIR|locus:2077982	203	COR413-PM2 "AT3G50830" [Arabid	1.0	1.0	0.684	2.7e-75
TAIR|locus:2115010	202	AT4G37220 "AT4G37220" [Arabido	0.990	0.995	0.613	4.1e-65
TAIR|locus:2044641	197	COR413-PM1 "AT2G15970" [Arabid	0.945	0.974	0.604	4.8e-62
TAIR|locus:2049003	189	AT2G23680 "AT2G23680" [Arabido	0.827	0.888	0.388	1.8e-30
TAIR|locus:2013743	226	COR314-TM2 "AT1G29390" [Arabid	0.640	0.575	0.268	2.8e-11
TAIR|locus:505006154	225	COR413IM1 "AT1G29395" [Arabido	0.694	0.626	0.248	7.4e-11

TAIR|locus:2077982 COR413-PM2 "AT3G50830" [Arabidopsis thaliana (taxid:3702)]

 Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
 Identities = 139/203 (68%), Positives = 169/203 (83%)

Query:     1 MGRLNYLAMKTDDQVAAELISSDFNELKIAAKKLVNDATRLGGLGFGTSFLKWVASFAAI 60
             MGR++YLAMKTDD     L++SD  ELK+AAKKL +D ++LGGLGFG SFLK++ASFAAI
Sbjct:     1 MGRMDYLAMKTDDVDTVALVNSDMEELKVAAKKLFSDVSKLGGLGFGVSFLKFLASFAAI 60

Query:    61 YLLILDRTNWRSNMLTALLVPYIXXXXXXXXXXXXRGEVGRWIAFIAVVLRLFFPRHFPD 120
             YLLILDRTNW++ MLT+LL+PYI             G+VG+WIAF+AVVLRLFFP+HFPD
Sbjct:    61 YLLILDRTNWKTKMLTSLLIPYIFLSLPSVIFNFLSGDVGKWIAFVAVVLRLFFPKHFPD 120

Query:   121 WLDMPGSLILLLVVAPSFFAHTLKDSWVGVVICLLIGCYLLQEHIRASGGFRNSFTQGHG 180
             WL+MPGSLILLLVV+P F AH ++ +W+G VI L IGCYLLQEHIRASGGFRNSFTQ  G
Sbjct:   121 WLEMPGSLILLLVVSPHFLAHHIRGTWIGTVISLFIGCYLLQEHIRASGGFRNSFTQPRG 180

Query:   181 ISNTLGIVLLLVYPVWALVLHLI 203
             +SNTLGI+LLLVYPVWAL++ ++
Sbjct:   181 VSNTLGIILLLVYPVWALIVRVM 203

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISS

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2115010 AT4G37220 "AT4G37220" [Arabidopsis thaliana (taxid:3702)]

 Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
 Identities = 124/202 (61%), Positives = 154/202 (76%)

Query:     1 MGRLNYLAMKTDDQVAAELISSDFNELKIAAKKLVNDATRLGGLGFGTSFLKWVASFAAI 60
             MGR  +LAMKT++  AA LI+SD NE   AAKKLV D   LGG+GFGTS L+W AS  AI
Sbjct:     1 MGRGEFLAMKTEEN-AANLINSDMNEFVAAAKKLVKDVGMLGGVGFGTSVLQWAASIFAI 59

Query:    61 YLLILDRTNWRSNMLTALLVPYIXXXXXXXXXXXXRGEVGRWIAFIAVVLRLFFPRHFPD 120
             YLLILDRTNW++ MLT LLVPYI             G+ G+WIA IA+++RLFFP+ FP+
Sbjct:    60 YLLILDRTNWKTKMLTTLLVPYIFFTLPSVIFQFFSGDFGKWIALIAIIVRLFFPKEFPE 119

Query:   121 WLDMPGSLILLLVVAPSFFAHTLKDSWVGVVICLLIGCYLLQEHIRASGGFRNSFTQGHG 180
             WL++P +LIL++VV+PS  A TL++SWVG VICL+I CYL  EHI+ASGGF+NSFTQ +G
Sbjct:   120 WLEIPVALILIVVVSPSLIAWTLRESWVGAVICLVIACYLFHEHIKASGGFKNSFTQKNG 179

Query:   181 ISNTLGIVLLLVYPVWALVLHL 202
             ISNT+GIV LLVYPVW +  H+
Sbjct:   180 ISNTIGIVALLVYPVWTIFFHI 201

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009744 "response to sucrose stimulus" evidence=IEP;RCA

GO:0009749 "response to glucose stimulus" evidence=IEP

GO:0009750 "response to fructose stimulus" evidence=IEP;RCA

TAIR|locus:2044641 COR413-PM1 "AT2G15970" [Arabidopsis thaliana (taxid:3702)]

 Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
 Identities = 116/192 (60%), Positives = 150/192 (78%)

Query:     8 AMKTDDQVAAELISSDFNELKIAAKKLVNDATRLGGLGFGTSFLKWVASFAAIYLLILDR 67
             +++ D      +I SDFNEL IAAK L   A  L GLGFGTS L+WVAS AAIYLL+LDR
Sbjct:     5 SLRNDHGTLKAMIGSDFNELTIAAKNLATHAFTLTGLGFGTSVLEWVASIAAIYLLVLDR 64

Query:    68 TNWRSNMLTALLVPYIXXXXXXXXXXXXRGEVGRWIAFIAVVLRLFFPRHFPDWLDMPGS 127
             TNW++NMLT+LL+PYI            RGE+G+WIAF+AVV++LFFP+H  ++L++P +
Sbjct:    65 TNWKTNMLTSLLIPYIFFSLPSLIFGIFRGEIGKWIAFVAVVVQLFFPKHAREYLELPVA 124

Query:   128 LILLLVVAPSFFAHTLKDSWVGVVICLLIGCYLLQEHIRASGGFRNSFTQGHGISNTLGI 187
             L+LL VVAP+  A T +DSW+G+ ICL IGCYLLQEHIRASGGFRN+FT+ +GISNT+GI
Sbjct:   125 LVLLAVVAPNLIAGTFRDSWIGLAICLGIGCYLLQEHIRASGGFRNAFTKANGISNTVGI 184

Query:   188 VLLLVYPVWALV 199
             + L+V+PVWAL+
Sbjct:   185 ICLVVFPVWALI 196

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISS

GO:0009631 "cold acclimation" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0042631 "cellular response to water deprivation" evidence=IEP;RCA

GO:0005773 "vacuole" evidence=IDA

GO:0009269 "response to desiccation" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

TAIR|locus:2049003 AT2G23680 "AT2G23680" [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 68/175 (38%), Positives = 106/175 (60%)

Query:    25 NELKIAAKKLVNDATRLGGLGFGTSFLKWVASFAAIYLLILDRTNWR--SNMLTALLVPY 82
             NE++  A KL++     G     T FL+W+AS  A++L+ILD+T W+  +N++ +LL PY
Sbjct:     8 NEIQAVAGKLIHS---YGVPVMITLFLRWLASIVAVFLMILDQTKWKYSNNIMASLLAPY 64

Query:    83 IXXXXXXXXXXXXRGEVGRWIAFIAVVLRLFFPRHFPDWLDMPGSLILLLVVAPSFFAHT 142
             +            R  VG+WIA + V+LRLF P HF + L++PG+ ILL+VV PS     
Sbjct:    65 LFSSLPIVIFQVLRNGVGKWIALLTVILRLFLPNHFHESLEIPGATILLIVVTPSDIGAI 124

Query:   143 LKDS--WVGVVICLLIGCYLLQEHIRASGGFRNSFTQGHGISNTLGIVLLLVYPV 195
              +D   + G  +CLL   YL+ +H +A GG +NSFTQ   ++ ++ + +L VYP+
Sbjct:   125 FRDDLRYTGGDVCLLTSFYLINKHTKACGGIKNSFTQKDKVTYSICLWILFVYPI 179

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0016020 "membrane" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009625 "response to insect" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2013743 COR314-TM2 "AT1G29390" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 37/138 (26%), Positives = 70/138 (50%)

Query:    51 LKWVASFAAIYLLILDRTNWRSNMLTALLVPYIXXXXXXXXXXXXRGEVGRWIAFIAVVL 110
             L+W+++ + + L+    T    + +    VP              +GE G W AF+A++ 
Sbjct:    86 LQWISTISCVALMFARGTGIHKSFV----VPLFALQAPMGIVSWMKGEYGIWAAFLALLT 141

Query:   111 RLFFPRHFPDWLDMPGSLILLLVVAPSFFAHTLKDSWVGVVICLLIGCYLLQEHIRASGG 170
             RLFF   FP  L++P   +LL++VAP +   +++    G ++ L I C+L  +H   +G 
Sbjct:   142 RLFFS--FPVELELPFIALLLVIVAP-YQVMSIRGKQEGAILSLAISCFLAFQHFSRAGT 198

Query:   171 FRNSFTQGHGISNTLGIV 188
              + +F Q + +  T+ I+
Sbjct:   199 LQKAFDQ-NSVLATVAII 215

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009631 "cold acclimation" evidence=IMP

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0031357 "integral to chloroplast inner membrane" evidence=IDA

GO:0070417 "cellular response to cold" evidence=IEP

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:505006154 COR413IM1 "AT1G29395" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 37/149 (24%), Positives = 75/149 (50%)

Query:    51 LKWVASFAAIYLLILDRTNWRSNMLTALLVPYIXXXXXXXXXXXXRGEVGRWIAFIAVVL 110
             L+W+++ + + L++   T    +++    VP              +GE G W AF+A++ 
Sbjct:    85 LQWISTISCLALMLARGTGIHKSVV----VPLFALHAPSSIVAWIKGEYGVWAAFLALIA 140

Query:   111 RLFFPRHFPDWLDMPGSLILLLVVAPSFFAHTLKDSWVGVVICLLIGCYLLQEHIRASGG 170
             RLFF   FP  L++P   +LL++VAP +    ++    G +I + I  +L  +H   +G 
Sbjct:   141 RLFFT--FPGELELPFIALLLVIVAP-YQVMNIRGKQEGAIIAIAISGFLAFQHFSRAGS 197

Query:   171 FRNSFTQGHGISNTLGIVLLLVYPVWALV 199
                ++ +G  ++ T+ I+ + V  +  L+
Sbjct:   198 LEKAYEKGSVLA-TVAIIGVTVVSLLLLL 225


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.330   0.144   0.458    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      203       191   0.00094  110 3  11 22  0.49    31
                                                     31  0.43    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  615 (65 KB)
  Total size of DFA:  171 KB (2098 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.28u 0.09s 15.37t   Elapsed:  00:00:01
  Total cpu time:  15.28u 0.09s 15.37t   Elapsed:  00:00:01
  Start:  Thu May  9 15:10:21 2013   End:  Thu May  9 15:10:22 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=ISS;IDA

GO:0009631 "cold acclimation" evidence=IEP;IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0042631 "cellular response to water deprivation" evidence=IEP;RCA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0031357 "integral to chloroplast inner membrane" evidence=IDA

GO:0070417 "cellular response to cold" evidence=IEP

GO:0009269 "response to desiccation" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SVL6	CRPM2_ARATH	No assigned EC number	0.7241	1.0	1.0	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_VII3243 hypothetical protein (204 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	203
pfam05562	186	pfam05562, WCOR413, Cold acclimation protein WCOR4	1e-100

>gnl|CDD|191305 pfam05562, WCOR413, Cold acclimation protein WCOR413

 Score =  286 bits (734), Expect = e-100
 Identities = 132/186 (70%), Positives = 161/186 (86%), Gaps = 1/186 (0%)

Query: 7   LAMKTDD-QVAAELISSDFNELKIAAKKLVNDATRLGGLGFGTSFLKWVASFAAIYLLIL 65
           LAMKTD  + AA L+SSD  EL  AAKKL + A +LGGLGFGT+FL+W+AS AAIYLLIL
Sbjct: 1   LAMKTDASEAAAALLSSDLQELGAAAKKLASHAIKLGGLGFGTTFLQWLASIAAIYLLIL 60

Query: 66  DRTNWRSNMLTALLVPYIFFSFPSVLFNFFRGEVGRWIAFIAVVLRLFFPRHFPDWLDMP 125
           DRTNW++N+LT+LLVPYIF S PSV+F++ RGEVG+WIAFIAV++RLFFPRHFP  L++P
Sbjct: 61  DRTNWKTNILTSLLVPYIFLSLPSVIFSWIRGEVGKWIAFIAVIVRLFFPRHFPGELELP 120

Query: 126 GSLILLLVVAPSFFAHTLKDSWVGVVICLLIGCYLLQEHIRASGGFRNSFTQGHGISNTL 185
           G+LILL+VVAPS  A T + S +GVVICL+IGCYLLQEHIRASGGFRN+FT+G G+SNT+
Sbjct: 121 GALILLVVVAPSLIASTFRGSQIGVVICLVIGCYLLQEHIRASGGFRNAFTKGSGVSNTI 180

Query: 186 GIVLLL 191
           GI+LL 
Sbjct: 181 GIILLF 186

This family consists of several WCOR413-like plant cold acclimation proteins. Length = 186

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	203
PF05562	187	WCOR413: Cold acclimation protein WCOR413; InterPr	100.0

>PF05562 WCOR413: Cold acclimation protein WCOR413; InterPro: IPR008892 This family consists of several WCOR413-like plant cold acclimation proteins

Probab=100.00  E-value=1.8e-90  Score=582.97  Aligned_cols=184  Identities=72%  Similarity=1.226  Sum_probs=180.6

Q ss_pred             cccccC--hHHHHHHHHhhHHHHHHHHHHhhhhhhhhcCCCcchhhHHHHHHHHHHHHHHHhCCCccchhhhhhhhhhhh
Q 028807            7 LAMKTD--DQVAAELISSDFNELKIAAKKLVNDATRLGGLGFGTSFLKWVASFAAIYLLILDRTNWRSNMLTALLVPYIF   84 (203)
Q Consensus         7 l~m~t~--~~~~~~~i~sd~~~l~~aa~kL~~ha~~l~~~g~~t~~lqWiasiaAi~LLildrTnwkTni~tslLVPyi~   84 (203)
                      |+||||  ++.++++|+||+||++.||||+++||++++|+|++|+++||++++||+|||++|||||||||+|||||||+|
T Consensus         1 l~mkt~~~~~~~~~~l~sd~~~l~~aa~kl~~~a~~~~~~~~~t~~lqWias~aAi~LlildrtnwkTniltslLVPyi~   80 (187)
T PF05562_consen    1 LAMKTDSSSEFAAALLSSDLQELGMAAKKLASHAICLGSLGFGTSFLQWIASIAAIYLLILDRTNWKTNILTSLLVPYIF   80 (187)
T ss_pred             CCccccccchhhhhhhccCHHHHHHHHHhhhcceeeeccccccHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHH
Confidence            689997  677889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCccchhhhhcccchhHHHHHHHHHHhhcCCCCCCcccchhhhhhhhhhchhhhHhhhccchhhHHHHHHHHHHHHHHH
Q 028807           85 FSFPSVLFNFFRGEVGRWIAFIAVVLRLFFPRHFPDWLDMPGSLILLLVVAPSFFAHTLKDSWVGVVICLLIGCYLLQEH  164 (203)
Q Consensus        85 l~~Ps~vf~~~rGe~G~WiAFlavv~RLFfp~~fP~~LElP~a~iLLvvvaP~~~~~~~R~s~~G~vI~L~Ia~YLl~qH  164 (203)
                      +|+|+++|||+|||||+||||+|+++|||||||||||||||++++||+||||||+|+++||||+|++||++|||||+|||
T Consensus        81 lslPs~if~~~rGe~G~WiAFlavv~RLFfp~~fP~~LElP~a~iLLivvaP~~~~~~~R~~~~G~vi~l~I~~YLl~qH  160 (187)
T PF05562_consen   81 LSLPSVIFNWFRGEYGKWIAFLAVVLRLFFPRHFPGELELPGALILLIVVAPSQIANTFRGSQIGAVICLAIACYLLQQH  160 (187)
T ss_pred             HhCcHHHHHHHhccccHHHHHHHHHHHHhCcccCCchhhcchhhheeeEeCchHHHHhccCCeeehhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCcccccCCccchhhHHHHHH
Q 028807          165 IRASGGFRNSFTQGHGISNTLGIVLL  190 (203)
Q Consensus       165 i~~~Gg~r~aF~q~~gi~~Ti~Ii~l  190 (203)
                      ||++||+||||+|+|||+||+||+++
T Consensus       161 i~~~Gg~r~aF~~~~gis~t~~I~ll  186 (187)
T PF05562_consen  161 IRASGGFRNAFTQGSGISNTIGIILL  186 (187)
T ss_pred             HHhcCChhhhhhcccccceeeEEEEe
Confidence            99999999999999999999999875

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00