Citrus Sinensis ID: 028808

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200---
Protein Sequence
MSMASLILKRSSPYAIRSVIDSLRIPTSSRAYASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEEAPSKMKVSGGDVILGQI
Secondary Structure (PSIPRED)
cccHHHHHHccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccEEccHHHHHcccEEEEEEcccccccccccccccHHHccHHHHHHccccEEEEEEEccHHHHHHHHHHccccccEEEEEcccccHHHHHccccccccccccccccEEEEEEEccEEEEEEEEccccccEEccHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHccHHHHHHHHHHcccccccccHHHEcccccccccccccEEEEEEEEccccccccEEccHHHHccccEEEEEEEcccccHHHHHcHHHHHHHcHHHHHcccccEEEEEEcccHHHHHHHHHHcccccccEEEEccccHHHHHHccEEEccccccccccHHHHEEEcccEEEEEEEcccccccEEccHHHHHHHc
Coil and Loop (DISEMBL)
msmaslilkrsspyaIRSVIDslriptssrayaSVAVGSDIVSAAQDVSLQkartwdegvssnfattpikdifkgKKVVIFglpgaytgvcsnqhvpsyknNIDKFKAKGIDSVICVavndpyvmngwaeklqAKDVIEFygdfdgsfhkslDLGKDLsaallgprserwsayVEDGRIkalnveeapskmkvsggdvilgqi
Flexible Loop (DISEMBL)
msmaslilkrsspyaIRSVIDSLRIPTSSRAYASVAVGSDIVSAAQDVSLQKartwdegvssnfattpikdifKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKalnveeapskmkvsggdvilgqi
Low Complexity Region (SEG)
MSMASLILKRSSPYAIRSVIDSLRIPTSSRAYASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEEAPSKMKVSGGDVILGQI
Disordered region (IsUnstruct)
*************YAIRSVIDSLRIPTSSRAYASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKAL*********************
Disordered Region (DISOPRED)
*******************************YASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEEAPSKMKVSGGDVILGQI
Disordered Region (DISEMBL)
********KRSSPYAIRSVIDSLRIPTSSRAYASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEEAPSKMKVSGGDVILGQI
Disordered Region (DISPRO)
****************R*****LRIPTSSRAYASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEEAPSKMKVSGGDVILGQI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSMASLILKRSSPYAIRSVIDSLRIPTSSRAYASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEEAPSKMKVSGGDVILGQI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	203	2.2.26 [Sep-21-2011]
Q9M7T0	201	Peroxiredoxin-2F, mitocho	yes	no	0.990	1.0	0.756	2e-85
Q9SDD6	198	Peroxiredoxin-2F, mitocho	yes	no	0.975	1.0	0.721	6e-78
Q9FR35	162	Peroxiredoxin-2C OS=Oryza	no	no	0.615	0.771	0.428	6e-25
Q69TY4	232	Peroxiredoxin-2E-1, chlor	no	no	0.610	0.534	0.404	6e-24
P56577	177	Putative peroxiredoxin OS	N/A	no	0.699	0.802	0.390	1e-23
O22711	162	Peroxiredoxin-2D OS=Arabi	no	no	0.699	0.876	0.365	1e-21
Q9XEX2	162	Peroxiredoxin-2B OS=Arabi	no	no	0.699	0.876	0.358	2e-21
Q9SRZ4	162	Peroxiredoxin-2C OS=Arabi	no	no	0.699	0.876	0.358	8e-21
P73728	189	Putative peroxiredoxin sl	N/A	no	0.655	0.703	0.369	1e-20
Q949U7	234	Peroxiredoxin-2E, chlorop	no	no	0.837	0.726	0.298	1e-20

>sp|Q9M7T0|PRX2F_ARATH Peroxiredoxin-2F, mitochondrial OS=Arabidopsis thaliana GN=PRXIIF PE=1 SV=2

 Score =  314 bits (805), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 152/201 (75%), Positives = 172/201 (85%)

Query: 3   MASLILKRSSPYAIRSVIDSLRIPTSSRAYASVAVGSDIVSAAQDVSLQKARTWDEGVSS 62
           MA  ILK  +  A+RS  +S RI  SSR ++ +A G+DI SAA  VSLQKAR+WDEGVSS
Sbjct: 1   MAMSILKLRNLSALRSAANSARIGVSSRGFSKLAEGTDITSAAPGVSLQKARSWDEGVSS 60

Query: 63  NFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDP 122
            F+TTP+ DIFKGKKVVIFGLPGAYTGVCS QHVPSYK++IDKFKAKGIDSVICV+VNDP
Sbjct: 61  KFSTTPLSDIFKGKKVVIFGLPGAYTGVCSQQHVPSYKSHIDKFKAKGIDSVICVSVNDP 120

Query: 123 YVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKAL 182
           + +NGWAEKL AKD IEFYGDFDG FHKSL L KDLSAALLGPRSERWSAYVEDG++KA+
Sbjct: 121 FAINGWAEKLGAKDAIEFYGDFDGKFHKSLGLDKDLSAALLGPRSERWSAYVEDGKVKAV 180

Query: 183 NVEEAPSKMKVSGGDVILGQI 203
           NVEEAPS  KV+G +VILGQI
Sbjct: 181 NVEEAPSDFKVTGAEVILGQI 201

Reduces hydrogen peroxide and alkyl hydroperoxides with reducing equivalents provided through the thioredoxin or glutaredoxin system. May be involved in mitochondrial redox homeostasis.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 1EC: .EC: 1EC: .EC: 1EC: 5

>sp|Q9SDD6|PRX2F_ORYSJ Peroxiredoxin-2F, mitochondrial OS=Oryza sativa subsp. japonica GN=PRXIIF PE=2 SV=1

 Score =  290 bits (741), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 145/201 (72%), Positives = 165/201 (82%), Gaps = 3/201 (1%)

Query: 3   MASLILKRSSPYAIRSVIDSLRIPTSSRAYASVAVGSDIVSAAQDVSLQKARTWDEGVSS 62
           MAS +L++++   +     +     +SR  ASV  GSDIVSAA  VSLQKAR+WDEGV++
Sbjct: 1   MASALLRKAT---VGGSAAAAAARWASRGLASVGSGSDIVSAAPGVSLQKARSWDEGVAT 57

Query: 63  NFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDP 122
           NF+TTP+KDIF GKKVVIFGLPGAYTGVCS  HVPSYKNNIDK KAKG+DSVICV+VNDP
Sbjct: 58  NFSTTPLKDIFHGKKVVIFGLPGAYTGVCSQAHVPSYKNNIDKLKAKGVDSVICVSVNDP 117

Query: 123 YVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKAL 182
           Y +NGWAEKLQAKD IEFYGDFDGSFHKSLDL  DLSAALLG RS RWSA+V+DG+IKA 
Sbjct: 118 YALNGWAEKLQAKDAIEFYGDFDGSFHKSLDLEVDLSAALLGRRSHRWSAFVDDGKIKAF 177

Query: 183 NVEEAPSKMKVSGGDVILGQI 203
           NVE APS  KVSG +VIL QI
Sbjct: 178 NVEVAPSDFKVSGAEVILDQI 198

Reduces hydrogen peroxide and alkyl hydroperoxides with reducing equivalents provided through the thioredoxin or glutaredoxin system. May be involved in mitochondrial redox homeostasis.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q9FR35|PRX2C_ORYSJ Peroxiredoxin-2C OS=Oryza sativa subsp. japonica GN=PRXIIC PE=1 SV=1

 Score =  114 bits (284), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 54/126 (42%), Positives = 81/126 (64%), Gaps = 1/126 (0%)

Query: 75  GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQA 134
           GKKVV+FG+PGA+T  CSNQHVP + N  ++ KAKG+D ++ V+VNDP+VM  WA+    
Sbjct: 35  GKKVVLFGVPGAFTPTCSNQHVPGFINQAEQLKAKGVDDILLVSVNDPFVMKAWAKSYPE 94

Query: 135 KDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEEAPSKMKVS 194
              ++F  D  G++ K+L L  DLS   LG RS R++   ++ ++   N+EE   +  +S
Sbjct: 95  NKHVKFLADGLGTYTKALGLELDLSEKGLGIRSRRFALLADNLKVTVANIEEG-GQFTIS 153

Query: 195 GGDVIL 200
           G + IL
Sbjct: 154 GAEEIL 159

Reduces hydrogen peroxide and alkyl hydroperoxides with reducing equivalents provided through the thioredoxin or glutaredoxin system. May be involved in intracellular redox signaling.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q69TY4|PR2E1_ORYSJ Peroxiredoxin-2E-1, chloroplastic OS=Oryza sativa subsp. japonica GN=PRXIIE-1 PE=2 SV=1

 Score =  110 bits (275), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 51/126 (40%), Positives = 76/126 (60%), Gaps = 2/126 (1%)

Query: 63  NFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDP 122
              T  ++D+  GKKVV+F +PGA+T  C+ +HVP +     + +AKG+D+V CV+VND 
Sbjct: 91  ELKTVTVRDLTAGKKVVLFAVPGAFTPTCTQKHVPGFVAKAGELRAKGVDAVACVSVNDA 150

Query: 123 YVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLS--AALLGPRSERWSAYVEDGRIK 180
           +VM  W E L   D +    D +G   +++ +  DLS   A LG RS R++   EDG +K
Sbjct: 151 FVMRAWKESLGVGDEVLLLSDGNGELARAMGVELDLSDKPAGLGVRSRRYALLAEDGVVK 210

Query: 181 ALNVEE 186
            LN+EE
Sbjct: 211 VLNLEE 216

Reduces hydrogen peroxide and alkyl hydroperoxides with reducing equivalents provided through the thioredoxin or glutaredoxin system. May be involved in chloroplast redox homeostasis.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|P56577|MALF2_MALFU Putative peroxiredoxin OS=Malassezia furfur PE=1 SV=1

 Score =  109 bits (272), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/146 (39%), Positives = 86/146 (58%), Gaps = 4/146 (2%)

Query: 59  GVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVA 118
           G+ + F T   +D +KGKKVVI  +PGAYT +C  QH+P     +D+ KAKG+D+V  +A
Sbjct: 35  GIPTTFKT---RDEWKGKKVVIVSIPGAYTPICHQQHIPPLVKRVDELKAKGVDAVYVIA 91

Query: 119 VNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGR 178
            NDP+VM  W     AKD + F  D D +F K+L    DLSA   G R+ R++  ++D +
Sbjct: 92  SNDPFVMAAWGNFNNAKDKVVFATDIDLAFSKALGATIDLSAKHFGERTARYALIIDDNK 151

Query: 179 IKALNVEEAPS-KMKVSGGDVILGQI 203
           I     +E  + K++ +  D IL ++
Sbjct: 152 IVDFASDEGDTGKLQNASIDTILTKV 177

Malassezia furfur (taxid: 55194)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|O22711|PRX2D_ARATH Peroxiredoxin-2D OS=Arabidopsis thaliana GN=PRXIID PE=1 SV=2

 Score =  103 bits (256), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 80/145 (55%), Gaps = 3/145 (2%)

Query: 56  WDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVI 115
           +DE  +    T  +  I  GKKV++FG+PGA+T  CS  HVP +    ++ K+KGID +I
Sbjct: 18  FDE--NDQLQTVSVHSIAAGKKVILFGVPGAFTPTCSMSHVPGFIGKAEELKSKGIDEII 75

Query: 116 CVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE 175
           C +VNDP+VM  W +  Q    ++F  D  G +   L L  DL    LG RS R++  ++
Sbjct: 76  CFSVNDPFVMKAWGKTYQENKHVKFVADGSGEYTHLLGLELDLKDKGLGIRSRRFALLLD 135

Query: 176 DGRIKALNVEEAPSKMKVSGGDVIL 200
           + ++   NVE    +  VS  + IL
Sbjct: 136 NLKVTVANVENG-GEFTVSSAEDIL 159

Reduces hydrogen peroxide and alkyl hydroperoxides with reducing equivalents provided through the thioredoxin or glutaredoxin system. May be involved in intracellular redox signaling.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q9XEX2|PRX2B_ARATH Peroxiredoxin-2B OS=Arabidopsis thaliana GN=PRXIIB PE=1 SV=1

 Score =  102 bits (254), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 80/145 (55%), Gaps = 3/145 (2%)

Query: 56  WDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVI 115
           +DE  +    T  +  +  GKKV++FG+PGA+T  CS +HVP +    ++ K+KG+D +I
Sbjct: 18  FDE--NDQLQTASVHSLAAGKKVILFGVPGAFTPTCSMKHVPGFIEKAEELKSKGVDEII 75

Query: 116 CVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE 175
           C +VNDP+VM  W +       ++F  D  G +   L L  DL    LG RS R++  ++
Sbjct: 76  CFSVNDPFVMKAWGKTYPENKHVKFVADGSGEYTHLLGLELDLKDKGLGVRSRRFALLLD 135

Query: 176 DGRIKALNVEEAPSKMKVSGGDVIL 200
           D ++   NVE    +  VS  D IL
Sbjct: 136 DLKVTVANVESG-GEFTVSSADDIL 159

Reduces hydrogen peroxide and alkyl hydroperoxides with reducing equivalents provided through the thioredoxin or glutaredoxin system. May be involved in intracellular redox signaling.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q9SRZ4|PRX2C_ARATH Peroxiredoxin-2C OS=Arabidopsis thaliana GN=PRXIIC PE=1 SV=1

 Score =  100 bits (248), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 79/145 (54%), Gaps = 3/145 (2%)

Query: 56  WDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVI 115
           +DE  +    T  +  I  GKKV++FG+PGA+T  CS  HVP +    ++ K+KGID +I
Sbjct: 18  FDE--NDQLQTVSVHSIAAGKKVILFGVPGAFTPTCSMSHVPGFIGKAEELKSKGIDEII 75

Query: 116 CVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE 175
           C +VNDP+VM  W +       ++F  D  G +   L L  DL    LG RS R++  ++
Sbjct: 76  CFSVNDPFVMKAWGKTYPENKHVKFVADGSGEYTHLLGLELDLKDKGLGIRSRRFALLLD 135

Query: 176 DGRIKALNVEEAPSKMKVSGGDVIL 200
           + ++   NVE    +  VS  + IL
Sbjct: 136 NLKVTVANVESG-GEFTVSSAEDIL 159

Reduces hydrogen peroxide and alkyl hydroperoxides with reducing equivalents provided through the thioredoxin or glutaredoxin system. May be involved in intracellular redox signaling.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|P73728|Y1621_SYNY3 Putative peroxiredoxin sll1621 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1621 PE=1 SV=1

 Score =  100 bits (248), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 82/138 (59%), Gaps = 5/138 (3%)

Query: 52  KARTWDEGVSS----NFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFK 107
           K R  DE V       +     + IF GKKVV+F LPGA+T  CS+ H+P Y+   ++F+
Sbjct: 12  KTRVRDESVPGPNPYRWEDKTTEQIFGGKKVVLFSLPGAFTPTCSSNHLPRYEQLFEEFQ 71

Query: 108 AKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRS 167
           A G+D +IC++VND +VM  W +++ A D ++   D +G F + + +  + S    G RS
Sbjct: 72  ALGVDDIICLSVNDAFVMFQWGKQIGA-DKVKLLPDGNGEFTRKMGMLVEKSNLGFGMRS 130

Query: 168 ERWSAYVEDGRIKALNVE 185
            R+S +V DG+I+ + +E
Sbjct: 131 WRYSMFVNDGKIEKMFIE 148

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q949U7|PRX2E_ARATH Peroxiredoxin-2E, chloroplastic OS=Arabidopsis thaliana GN=PRXIIE PE=1 SV=2

 Score = 99.8 bits (247), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 92/174 (52%), Gaps = 4/174 (2%)

Query: 28  SSRAYASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAY 87
           ++R++A+  V + I  +  D       ++ +  + +  T  +  +  GKK ++F +PGA+
Sbjct: 60  TTRSFATTPVTASI--SVGDKLPDSTLSYLDPSTGDVKTVTVSSLTAGKKTILFAVPGAF 117

Query: 88  TGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGS 147
           T  CS +HVP + +   + ++KGID + C++VND +VM  W + L   D +    D +G 
Sbjct: 118 TPTCSQKHVPGFVSKAGELRSKGIDVIACISVNDAFVMEAWRKDLGINDEVMLLSDGNGE 177

Query: 148 FHKSLDLGKDL--SAALLGPRSERWSAYVEDGRIKALNVEEAPSKMKVSGGDVI 199
           F   L +  DL      LG RS R++   +DG +K LN+EE  +    S  D++
Sbjct: 178 FTGKLGVELDLRDKPVGLGVRSRRYAILADDGVVKVLNLEEGGAFTNSSAEDML 231

Reduces hydrogen peroxide and alkyl hydroperoxides with reducing equivalents provided through the thioredoxin or glutaredoxin system. May be involved in chloroplast redox homeostasis.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
255552287	201	peroxiredoxin, putative [Ricinus communi	0.990	1.0	0.786	1e-88
449527727	201	PREDICTED: peroxiredoxin-2F, mitochondri	0.990	1.0	0.781	2e-88
449463086	201	PREDICTED: peroxiredoxin-2F, mitochondri	0.990	1.0	0.776	5e-88
224144638	203	type IIF peroxiredoxin [Populus trichoca	0.990	0.990	0.802	3e-86
225432560	201	PREDICTED: peroxiredoxin-2F, mitochondri	0.980	0.990	0.773	4e-85
312282819	201	unnamed protein product [Thellungiella h	0.985	0.995	0.772	3e-84
297833346	201	hypothetical protein ARALYDRAFT_477906 [	0.990	1.0	0.756	8e-84
37783267	193	peroxiredoxin [Ipomoea batatas]	0.950	1.0	0.761	9e-84
18397457	201	peroxiredoxin-2F [Arabidopsis thaliana]	0.990	1.0	0.756	1e-83
21553531	201	unknown [Arabidopsis thaliana]	0.990	1.0	0.751	3e-83

>gi|255552287|ref|XP_002517188.1| peroxiredoxin, putative [Ricinus communis] gi|223543823|gb|EEF45351.1| peroxiredoxin, putative [Ricinus communis]

 Score =  331 bits (848), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 158/201 (78%), Positives = 179/201 (89%)

Query: 3   MASLILKRSSPYAIRSVIDSLRIPTSSRAYASVAVGSDIVSAAQDVSLQKARTWDEGVSS 62
           MAS IL+++   A++S+ D+LR+  SS +YA +AVG+DIVSAA DVSLQKAR+WDEGVSS
Sbjct: 1   MASAILRQTRSSALKSMFDNLRMGGSSMSYAKLAVGTDIVSAAPDVSLQKARSWDEGVSS 60

Query: 63  NFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDP 122
            F+TTP+KDIFKGKKVVIFGLPGAYTGVCS QHVPSYK N+DKFKAKGIDSVICVAVNDP
Sbjct: 61  KFSTTPLKDIFKGKKVVIFGLPGAYTGVCSQQHVPSYKKNVDKFKAKGIDSVICVAVNDP 120

Query: 123 YVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKAL 182
           YV+NGWAEKLQA D IEFYGDFDGSFHKSL+L KDLS ALLG RS RWSAYVE+G++K L
Sbjct: 121 YVLNGWAEKLQANDAIEFYGDFDGSFHKSLELDKDLSVALLGFRSHRWSAYVENGKVKVL 180

Query: 183 NVEEAPSKMKVSGGDVILGQI 203
           NVEEAPS  KVSGG+VILGQI
Sbjct: 181 NVEEAPSDFKVSGGEVILGQI 201

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449527727|ref|XP_004170861.1| PREDICTED: peroxiredoxin-2F, mitochondrial-like [Cucumis sativus]

 Score =  330 bits (846), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 157/201 (78%), Positives = 178/201 (88%)

Query: 3   MASLILKRSSPYAIRSVIDSLRIPTSSRAYASVAVGSDIVSAAQDVSLQKARTWDEGVSS 62
           MAS ILKR S  A+ S+++S+RI  SSR +A+VAVG+DIVSAA DVSLQKAR+WDEGVSS
Sbjct: 1   MASAILKRVSASAMSSLVESIRIGASSRNFAAVAVGTDIVSAAPDVSLQKARSWDEGVSS 60

Query: 63  NFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDP 122
            F+TTP+KDIFKGKKVVIFGLPGAYTGVCS QHVPSYKN ID+ KAKGIDSVICV+VNDP
Sbjct: 61  KFSTTPLKDIFKGKKVVIFGLPGAYTGVCSQQHVPSYKNKIDELKAKGIDSVICVSVNDP 120

Query: 123 YVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKAL 182
           Y +NGWAEK+QAKD I+F+GDFDG FHKSL+L KDLS ALLGPRSERWSAYV DG++KAL
Sbjct: 121 YTLNGWAEKIQAKDAIQFFGDFDGKFHKSLELDKDLSVALLGPRSERWSAYVVDGKVKAL 180

Query: 183 NVEEAPSKMKVSGGDVILGQI 203
           NVEEAPS  KV+G DVIL QI
Sbjct: 181 NVEEAPSDFKVTGADVILNQI 201

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463086|ref|XP_004149265.1| PREDICTED: peroxiredoxin-2F, mitochondrial-like [Cucumis sativus]

 Score =  328 bits (842), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 156/201 (77%), Positives = 178/201 (88%)

Query: 3   MASLILKRSSPYAIRSVIDSLRIPTSSRAYASVAVGSDIVSAAQDVSLQKARTWDEGVSS 62
           MAS ILKR S  A+ S+++S+RI  SSR +A+VAVG+DIVSAA DVSLQKAR+WDEGVSS
Sbjct: 1   MASAILKRVSASAMSSLVESIRIGASSRNFAAVAVGTDIVSAAPDVSLQKARSWDEGVSS 60

Query: 63  NFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDP 122
            F+TTP+K+IFKGKKVVIFGLPGAYTGVCS QHVPSYKN ID+ KAKGIDSVICV+VNDP
Sbjct: 61  KFSTTPLKEIFKGKKVVIFGLPGAYTGVCSQQHVPSYKNKIDELKAKGIDSVICVSVNDP 120

Query: 123 YVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKAL 182
           Y +NGWAEK+QAKD I+F+GDFDG FHKSL+L KDLS ALLGPRSERWSAYV DG++KAL
Sbjct: 121 YTLNGWAEKIQAKDAIQFFGDFDGKFHKSLELDKDLSVALLGPRSERWSAYVVDGKVKAL 180

Query: 183 NVEEAPSKMKVSGGDVILGQI 203
           NVEEAPS  KV+G DVIL QI
Sbjct: 181 NVEEAPSDFKVTGADVILNQI 201

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144638|ref|XP_002325358.1| type IIF peroxiredoxin [Populus trichocarpa] gi|222862233|gb|EEE99739.1| type IIF peroxiredoxin [Populus trichocarpa]

 Score =  323 bits (828), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 163/203 (80%), Positives = 175/203 (86%), Gaps = 2/203 (0%)

Query: 3   MASLILKRSSPYAI-RSVIDSLRIPTSS-RAYASVAVGSDIVSAAQDVSLQKARTWDEGV 60
           MAS ILKR+SP  + +S+ DSL I   S R+YA VAVG+DIVSAA  VSLQK+RTWDEGV
Sbjct: 1   MASAILKRTSPSCLLKSMADSLGIIGGSWRSYAKVAVGTDIVSAAPGVSLQKSRTWDEGV 60

Query: 61  SSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN 120
           SS F+TTP+KDIFKGKKVVIFGLPGAYTGVCS QHVPSYKN IDKFKAKGIDSVICVAVN
Sbjct: 61  SSKFSTTPLKDIFKGKKVVIFGLPGAYTGVCSQQHVPSYKNIIDKFKAKGIDSVICVAVN 120

Query: 121 DPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIK 180
           DPY MN WAEKLQAKD IEFYGDFDGS HKSL+L KDLS ALLG RSERWSAYVEDG +K
Sbjct: 121 DPYTMNAWAEKLQAKDAIEFYGDFDGSLHKSLELNKDLSVALLGHRSERWSAYVEDGMVK 180

Query: 181 ALNVEEAPSKMKVSGGDVILGQI 203
            LNVEEAPS  KVS G+VILGQI
Sbjct: 181 VLNVEEAPSDFKVSSGEVILGQI 203

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432560|ref|XP_002281011.1| PREDICTED: peroxiredoxin-2F, mitochondrial [Vitis vinifera] gi|297737000|emb|CBI26201.3| unnamed protein product [Vitis vinifera] gi|342160854|gb|AEL16463.1| type II peroxiredoxin F [Vitis vinifera]

 Score =  319 bits (818), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 157/203 (77%), Positives = 176/203 (86%), Gaps = 4/203 (1%)

Query: 3   MASLILKRSSPYAIRSVIDSLRIPTS--SRAYASVAVGSDIVSAAQDVSLQKARTWDEGV 60
           MAS ILKRS    ++S ++SLRI  +  SR YASVAVG+D+VSAA DV LQKARTWDEGV
Sbjct: 1   MASRILKRS--MMMKSTVESLRIAAAAASRHYASVAVGTDLVSAAPDVRLQKARTWDEGV 58

Query: 61  SSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN 120
           SS F+TTP+K++FK KKVVIFGLPGAYTGVCS QHVPSYK N+DKFKAKGIDSVICVAVN
Sbjct: 59  SSKFSTTPLKELFKDKKVVIFGLPGAYTGVCSAQHVPSYKKNVDKFKAKGIDSVICVAVN 118

Query: 121 DPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIK 180
           DPY +N WAEKL+AKD IEFYGDFDGSFHKSLDL  DLSAALLGPRS RWSAYV DG++K
Sbjct: 119 DPYTLNAWAEKLEAKDAIEFYGDFDGSFHKSLDLEVDLSAALLGPRSHRWSAYVVDGKVK 178

Query: 181 ALNVEEAPSKMKVSGGDVILGQI 203
           ALN+E APS++KVSG DVIL QI
Sbjct: 179 ALNIESAPSEVKVSGADVILEQI 201

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282819|dbj|BAJ34275.1| unnamed protein product [Thellungiella halophila]

 Score =  317 bits (811), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 156/202 (77%), Positives = 175/202 (86%), Gaps = 2/202 (0%)

Query: 3   MASLILK-RSSPYAIRSVIDSLRIPTSSRAYASVAVGSDIVSAAQDVSLQKARTWDEGVS 61
           MA  ILK R+SP A+RS  +S+RI  SSR ++ ++ G+DI SAA  VSLQKAR+WDEGVS
Sbjct: 1   MAMSILKLRNSP-ALRSAANSVRIGVSSRGFSKLSEGTDITSAAPGVSLQKARSWDEGVS 59

Query: 62  SNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND 121
           S F+TTP+ DIFKGKKVVIFGLPGAYTGVCS QHVPSYK+ IDKFKAKGIDSVICV+VND
Sbjct: 60  SKFSTTPLTDIFKGKKVVIFGLPGAYTGVCSQQHVPSYKSQIDKFKAKGIDSVICVSVND 119

Query: 122 PYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKA 181
           PY +NGWAEKL AKD IEFYGDFDG FHKSL L KDLSAALLGPRSERWSAYVEDG++KA
Sbjct: 120 PYAINGWAEKLDAKDAIEFYGDFDGKFHKSLGLDKDLSAALLGPRSERWSAYVEDGKVKA 179

Query: 182 LNVEEAPSKMKVSGGDVILGQI 203
           +NVEEAPS  KVSG +VILGQI
Sbjct: 180 VNVEEAPSDFKVSGAEVILGQI 201

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833346|ref|XP_002884555.1| hypothetical protein ARALYDRAFT_477906 [Arabidopsis lyrata subsp. lyrata] gi|297330395|gb|EFH60814.1| hypothetical protein ARALYDRAFT_477906 [Arabidopsis lyrata subsp. lyrata]

 Score =  315 bits (807), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 152/201 (75%), Positives = 172/201 (85%)

Query: 3   MASLILKRSSPYAIRSVIDSLRIPTSSRAYASVAVGSDIVSAAQDVSLQKARTWDEGVSS 62
           MA  ILK  +  A+RS  +S RI  SSR ++ +A G+DI SAA  VSLQKAR+WDEGVSS
Sbjct: 1   MAMSILKLRNLSALRSAANSARIGVSSRGFSKLAEGTDITSAAPGVSLQKARSWDEGVSS 60

Query: 63  NFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDP 122
            F+TTP+ DIFKGKKVVIFGLPGAYTGVCS QHVPSYK++IDKFKAKGIDSV+CV+VNDP
Sbjct: 61  KFSTTPLSDIFKGKKVVIFGLPGAYTGVCSQQHVPSYKSHIDKFKAKGIDSVVCVSVNDP 120

Query: 123 YVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKAL 182
           Y +NGWAEKL AKD IEFYGDFDG FHKSL L KDLSAALLGPRSERWSAYVEDG++KA+
Sbjct: 121 YAINGWAEKLGAKDAIEFYGDFDGKFHKSLGLDKDLSAALLGPRSERWSAYVEDGKVKAV 180

Query: 183 NVEEAPSKMKVSGGDVILGQI 203
           NVEEAPS  KV+G +VILGQI
Sbjct: 181 NVEEAPSDFKVTGAEVILGQI 201

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37783267|gb|AAP42502.1| peroxiredoxin [Ipomoea batatas]

 Score =  315 bits (806), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 153/201 (76%), Positives = 173/201 (86%), Gaps = 8/201 (3%)

Query: 3   MASLILKRSSPYAIRSVIDSLRIPTSSRAYASVAVGSDIVSAAQDVSLQKARTWDEGVSS 62
           MA+ +LKR++   ++ +++ LR      +YASVAVGSD++SAA + SLQKAR+WDEGVSS
Sbjct: 1   MATAMLKRTT--MVKPMVNRLR------SYASVAVGSDLISAAPNASLQKARSWDEGVSS 52

Query: 63  NFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDP 122
           NF+TTP+KDIFKGK VVIFGLPGAYTGVCS QHVPSYKNNIDKFKAKGIDSVICVAVNDP
Sbjct: 53  NFSTTPLKDIFKGKNVVIFGLPGAYTGVCSAQHVPSYKNNIDKFKAKGIDSVICVAVNDP 112

Query: 123 YVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKAL 182
           Y MNGWAEKLQAKD IEFYGDFDGSFHKSLDL  DLS ALLG RS RWSAY+ DG+ K L
Sbjct: 113 YTMNGWAEKLQAKDAIEFYGDFDGSFHKSLDLTIDLSGALLGIRSHRWSAYIADGQAKGL 172

Query: 183 NVEEAPSKMKVSGGDVILGQI 203
           N+E+APS  KVSGGDVILGQI
Sbjct: 173 NIEQAPSDFKVSGGDVILGQI 193

Source: Ipomoea batatas

Species: Ipomoea batatas

Genus: Ipomoea

Family: Convolvulaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18397457|ref|NP_566268.1| peroxiredoxin-2F [Arabidopsis thaliana] gi|25090885|sp|Q9M7T0.2|PRX2F_ARATH RecName: Full=Peroxiredoxin-2F, mitochondrial; AltName: Full=Peroxiredoxin IIF; AltName: Full=Thioredoxin reductase 2F; Flags: Precursor gi|15450355|gb|AAK96471.1| AT3g06050/F24F17_3 [Arabidopsis thaliana] gi|20466103|gb|AAM19973.1| AT3g06050/F24F17_3 [Arabidopsis thaliana] gi|332640816|gb|AEE74337.1| peroxiredoxin-2F [Arabidopsis thaliana]

 Score =  314 bits (805), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 152/201 (75%), Positives = 172/201 (85%)

Query: 3   MASLILKRSSPYAIRSVIDSLRIPTSSRAYASVAVGSDIVSAAQDVSLQKARTWDEGVSS 62
           MA  ILK  +  A+RS  +S RI  SSR ++ +A G+DI SAA  VSLQKAR+WDEGVSS
Sbjct: 1   MAMSILKLRNLSALRSAANSARIGVSSRGFSKLAEGTDITSAAPGVSLQKARSWDEGVSS 60

Query: 63  NFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDP 122
            F+TTP+ DIFKGKKVVIFGLPGAYTGVCS QHVPSYK++IDKFKAKGIDSVICV+VNDP
Sbjct: 61  KFSTTPLSDIFKGKKVVIFGLPGAYTGVCSQQHVPSYKSHIDKFKAKGIDSVICVSVNDP 120

Query: 123 YVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKAL 182
           + +NGWAEKL AKD IEFYGDFDG FHKSL L KDLSAALLGPRSERWSAYVEDG++KA+
Sbjct: 121 FAINGWAEKLGAKDAIEFYGDFDGKFHKSLGLDKDLSAALLGPRSERWSAYVEDGKVKAV 180

Query: 183 NVEEAPSKMKVSGGDVILGQI 203
           NVEEAPS  KV+G +VILGQI
Sbjct: 181 NVEEAPSDFKVTGAEVILGQI 201

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553531|gb|AAM62624.1| unknown [Arabidopsis thaliana]

 Score =  313 bits (801), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 151/201 (75%), Positives = 172/201 (85%)

Query: 3   MASLILKRSSPYAIRSVIDSLRIPTSSRAYASVAVGSDIVSAAQDVSLQKARTWDEGVSS 62
           MA  ILK  +  A+R+  +S RI  SSR ++ +A G+DI SAA  VSLQKAR+WDEGVSS
Sbjct: 1   MAMSILKLRNLSALRAAANSARIGVSSRGFSKLAEGTDITSAAPGVSLQKARSWDEGVSS 60

Query: 63  NFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDP 122
            F+TTP+ DIFKGKKVVIFGLPGAYTGVCS QHVPSYK++IDKFKAKGIDSVICV+VNDP
Sbjct: 61  KFSTTPLSDIFKGKKVVIFGLPGAYTGVCSQQHVPSYKSHIDKFKAKGIDSVICVSVNDP 120

Query: 123 YVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKAL 182
           + +NGWAEKL AKD IEFYGDFDG FHKSL L KDLSAALLGPRSERWSAYVEDG++KA+
Sbjct: 121 FAINGWAEKLGAKDAIEFYGDFDGKFHKSLGLDKDLSAALLGPRSERWSAYVEDGKVKAV 180

Query: 183 NVEEAPSKMKVSGGDVILGQI 203
           NVEEAPS  KV+G +VILGQI
Sbjct: 181 NVEEAPSDFKVTGAEVILGQI 201

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
TAIR|locus:2080374	201	PRXIIF "peroxiredoxin IIF" [Ar	0.990	1.0	0.756	2.3e-78
TIGR_CMR|CPS_0141	157	CPS_0141 "antioxidant, AhpC/Ts	0.640	0.828	0.428	2.5e-26
UNIPROTKB|Q8E8M3	158	SO_4640 "Antioxidant AhpC/Tsa	0.729	0.936	0.384	1.2e-24
TIGR_CMR|SO_4640	158	SO_4640 "antioxidant, AhpC/Tsa	0.729	0.936	0.384	1.2e-24
FB|FBgn0038570	190	Prx5 "Peroxiredoxin 5" [Drosop	0.561	0.6	0.456	8.7e-24
DICTYBASE|DDB_G0285741	172	prdx5 "peroxiredoxin" [Dictyos	0.768	0.906	0.367	1.4e-23
UNIPROTKB|Q9KSA9	157	VC_1350 "Antioxidant, putative	0.729	0.942	0.394	4.8e-23
TIGR_CMR|VC_1350	157	VC_1350 "antioxidant, putative	0.729	0.942	0.394	4.8e-23
TAIR|locus:2009719	162	TPX1 "thioredoxin-dependent pe	0.778	0.975	0.351	2.6e-22
TIGR_CMR|VC_2637	247	VC_2637 "peroxiredoxin family	0.650	0.534	0.4	5.5e-22

TAIR|locus:2080374 PRXIIF "peroxiredoxin IIF" [Arabidopsis thaliana (taxid:3702)]

 Score = 788 (282.4 bits), Expect = 2.3e-78, P = 2.3e-78
 Identities = 152/201 (75%), Positives = 172/201 (85%)

Query:     3 MASLILKRSSPYAIRSVIDSLRIPTSSRAYASVAVGSDIVSAAQDVSLQKARTWDEGVSS 62
             MA  ILK  +  A+RS  +S RI  SSR ++ +A G+DI SAA  VSLQKAR+WDEGVSS
Sbjct:     1 MAMSILKLRNLSALRSAANSARIGVSSRGFSKLAEGTDITSAAPGVSLQKARSWDEGVSS 60

Query:    63 NFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDP 122
              F+TTP+ DIFKGKKVVIFGLPGAYTGVCS QHVPSYK++IDKFKAKGIDSVICV+VNDP
Sbjct:    61 KFSTTPLSDIFKGKKVVIFGLPGAYTGVCSQQHVPSYKSHIDKFKAKGIDSVICVSVNDP 120

Query:   123 YVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKAL 182
             + +NGWAEKL AKD IEFYGDFDG FHKSL L KDLSAALLGPRSERWSAYVEDG++KA+
Sbjct:   121 FAINGWAEKLGAKDAIEFYGDFDGKFHKSLGLDKDLSAALLGPRSERWSAYVEDGKVKAV 180

Query:   183 NVEEAPSKMKVSGGDVILGQI 203
             NVEEAPS  KV+G +VILGQI
Sbjct:   181 NVEEAPSDFKVTGAEVILGQI 201

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0016209 "antioxidant activity" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IMP;IDA

GO:0004601 "peroxidase activity" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0009060 "aerobic respiration" evidence=RCA

TIGR_CMR|CPS_0141 CPS_0141 "antioxidant, AhpC/Tsa family" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 57/133 (42%), Positives = 90/133 (67%)

Query:    71 DIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAE 130
             ++F  KKVV+F +PGA+T  CS  H+P Y  + D+ KAKG+D++IC++VND +VMN W E
Sbjct:    28 ELFAAKKVVLFAVPGAFTPTCSAAHLPGYVVSADELKAKGVDAIICLSVNDAFVMNAWGE 87

Query:   131 KLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEEAPSK 190
                A++++    D DGS+ K+L L  D +A   G RS+R++  +++G + +L+VEE P  
Sbjct:    88 SQNAENIM-MLADGDGSYTKALGLSMD-TATFGGVRSQRYAMIIDNGEVISLHVEE-PKS 144

Query:   191 MKVSGGDVILGQI 203
              +VS  +VIL Q+
Sbjct:   145 FEVSKAEVILDQL 157

GO:0016209 "antioxidant activity" evidence=ISS

UNIPROTKB|Q8E8M3 SO_4640 "Antioxidant AhpC/Tsa family" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 58/151 (38%), Positives = 87/151 (57%)

Query:    53 ARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID 112
             A T  +          + ++F GKKVV+F +PGA+T  CS  H+P Y    D+ KAKG+D
Sbjct:    10 AATLSQLTKDGMVNHQVTELFAGKKVVLFAVPGAFTPTCSEAHLPGYVVLADELKAKGVD 69

Query:   113 SVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSA 172
              + CV+VND +VM  W E   A +++    D D SF K+L L  D +A   G RS+R++ 
Sbjct:    70 LIACVSVNDAFVMKAWGEAQNASELL-MLADGDASFTKALGLEMD-TAGFGGVRSQRYAM 127

Query:   173 YVEDGRIKALNVEEAPSKMKVSGGDVILGQI 203
              +++G +  LNVE AP   +VS  +V+L  +
Sbjct:   128 IIDNGVVTLLNVE-APKSFEVSKAEVVLAAL 157

GO:0016209 "antioxidant activity" evidence=ISS

TIGR_CMR|SO_4640 SO_4640 "antioxidant, AhpC/Tsa family" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 58/151 (38%), Positives = 87/151 (57%)

Query:    53 ARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID 112
             A T  +          + ++F GKKVV+F +PGA+T  CS  H+P Y    D+ KAKG+D
Sbjct:    10 AATLSQLTKDGMVNHQVTELFAGKKVVLFAVPGAFTPTCSEAHLPGYVVLADELKAKGVD 69

Query:   113 SVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSA 172
              + CV+VND +VM  W E   A +++    D D SF K+L L  D +A   G RS+R++ 
Sbjct:    70 LIACVSVNDAFVMKAWGEAQNASELL-MLADGDASFTKALGLEMD-TAGFGGVRSQRYAM 127

Query:   173 YVEDGRIKALNVEEAPSKMKVSGGDVILGQI 203
              +++G +  LNVE AP   +VS  +V+L  +
Sbjct:   128 IIDNGVVTLLNVE-APKSFEVSKAEVVLAAL 157

GO:0016209 "antioxidant activity" evidence=ISS

FB|FBgn0038570 Prx5 "Peroxiredoxin 5" [Drosophila melanogaster (taxid:7227)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 53/116 (45%), Positives = 78/116 (67%)

Query:    71 DIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAK-GIDSVICVAVNDPYVMNGWA 129
             D+  GKKV+IFG+PGA+T  CS  H+P Y ++ D+ K+K G+D ++CV+VNDP+VM+ W 
Sbjct:    59 DLVNGKKVIIFGVPGAFTPGCSKTHLPGYVSSADELKSKQGVDEIVCVSVNDPFVMSAWG 118

Query:   130 EKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVE 185
             ++  A   +    D  G F K+LD+  DL   L G RS+R+S  VE+G++  LNVE
Sbjct:   119 KEHGAAGKVRLLADPAGGFTKALDVTIDLPP-LGGVRSKRYSLVVENGKVTELNVE 173

GO:0005777 "peroxisome" evidence=ISS

GO:0016209 "antioxidant activity" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0043066 "negative regulation of apoptotic process" evidence=IGI;IMP

GO:0045454 "cell redox homeostasis" evidence=IGI

GO:0008340 "determination of adult lifespan" evidence=IMP

DICTYBASE|DDB_G0285741 prdx5 "peroxiredoxin" [Dictyostelium discoideum (taxid:44689)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 58/158 (36%), Positives = 89/158 (56%)

Query:    47 DVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKF 106
             DV+L KA    +GV +        ++FK +KVV+F +PGA+T  CS +H+P +    ++ 
Sbjct:    16 DVTLGKALPPVDGVCAMAPKVLSGELFKDRKVVLFAVPGAFTPTCSAKHLPGFIEKSEEI 75

Query:   107 KAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGP- 165
             K KGI  + C+A NDP+VM+ W + + A   +    D +  F K + L  D  A LLG  
Sbjct:    76 KKKGISEIFCIATNDPFVMSAWGKDVNAGTAVTLLSDGNSEFTKKIGLEMDGKAFLLGED 135

Query:   166 RSERWSAYVEDGRIKALNVEEAPSKMKVSGGDVILGQI 203
             RS+R++  ++ G +K L VEE   K  VS  + IL Q+
Sbjct:   136 RSQRYAMILDSGVVKHLAVEEG-GKFDVSSAEAILKQL 172

GO:0005615 "extracellular space" evidence=IDA

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=ISS

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q9KSA9 VC_1350 "Antioxidant, putative" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 62/157 (39%), Positives = 88/157 (56%)

Query:    47 DVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKF 106
             DV L + RT  EG  ++  TT    +F  KKVV+F +PGA+T  CS  H+P Y    DKF
Sbjct:    10 DVQLSQ-RT-SEGTLTHSVTT----LFANKKVVLFAVPGAFTPTCSEAHLPGYVVLADKF 63

Query:   107 KAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPR 166
             K KG+D + CV+VND +VM  W E   A + I    D D SF K+L L  D +    G R
Sbjct:    64 KEKGVDMIACVSVNDAFVMKAWGEAQNASE-IAMLADGDASFTKALGLEMD-TGNFGGVR 121

Query:   167 SERWSAYVEDGRIKALNVEEAPSKMKVSGGDVILGQI 203
             S+R++  +E+  +  LNVE  P   ++S  + +L  +
Sbjct:   122 SQRYAMVIENNVVTLLNVEP-PKTFELSKAETVLASL 157

GO:0016209 "antioxidant activity" evidence=ISS

TIGR_CMR|VC_1350 VC_1350 "antioxidant, putative" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 62/157 (39%), Positives = 88/157 (56%)

Query:    47 DVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKF 106
             DV L + RT  EG  ++  TT    +F  KKVV+F +PGA+T  CS  H+P Y    DKF
Sbjct:    10 DVQLSQ-RT-SEGTLTHSVTT----LFANKKVVLFAVPGAFTPTCSEAHLPGYVVLADKF 63

Query:   107 KAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPR 166
             K KG+D + CV+VND +VM  W E   A + I    D D SF K+L L  D +    G R
Sbjct:    64 KEKGVDMIACVSVNDAFVMKAWGEAQNASE-IAMLADGDASFTKALGLEMD-TGNFGGVR 121

Query:   167 SERWSAYVEDGRIKALNVEEAPSKMKVSGGDVILGQI 203
             S+R++  +E+  +  LNVE  P   ++S  + +L  +
Sbjct:   122 SQRYAMVIENNVVTLLNVEP-PKTFELSKAETVLASL 157

GO:0016209 "antioxidant activity" evidence=ISS

TAIR|locus:2009719 TPX1 "thioredoxin-dependent peroxidase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 59/168 (35%), Positives = 90/168 (53%)

Query:    33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCS 92
             A +AVG D+V     +S      +DE  +    T  +  +  GKKV++FG+PGA+T  CS
Sbjct:     2 APIAVG-DVVPDGT-ISF-----FDE--NDQLQTASVHSLAAGKKVILFGVPGAFTPTCS 52

Query:    93 NQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSL 152
              +HVP +    ++ K+KG+D +IC +VNDP+VM  W +       ++F  D  G +   L
Sbjct:    53 MKHVPGFIEKAEELKSKGVDEIICFSVNDPFVMKAWGKTYPENKHVKFVADGSGEYTHLL 112

Query:   153 DLGKDLSAALLGPRSERWSAYVEDGRIKALNVEEAPSKMKVSGGDVIL 200
              L  DL    LG RS R++  ++D ++   NVE    +  VS  D IL
Sbjct:   113 GLELDLKDKGLGVRSRRFALLLDDLKVTVANVESG-GEFTVSSADDIL 159

GO:0005737 "cytoplasm" evidence=ISM

GO:0016209 "antioxidant activity" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0016020 "membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009407 "toxin catabolic process" evidence=RCA

TIGR_CMR|VC_2637 VC_2637 "peroxiredoxin family protein/glutaredoxin" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 54/135 (40%), Positives = 78/135 (57%)

Query:    71 DIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAE 130
             ++FKGK V++F LPGA+T  CS+ H+P Y      FK  G+DS++CV+VND +VMN W +
Sbjct:    34 ELFKGKTVIVFSLPGAFTPTCSSTHLPRYNELFPVFKEHGVDSILCVSVNDTFVMNAWKD 93

Query:   131 KLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVE--EAP 188
                A D I F  D +G F   + +  D +    G RS R+S  V+DG ++ + +E  E  
Sbjct:    94 DQNA-DNITFIPDGNGEFTDGMGMLVDKNDLGFGKRSWRYSMLVKDGVVEKMFIEPNEPG 152

Query:   189 SKMKVSGGDVILGQI 203
                KVS  D +L  I
Sbjct:   153 DPFKVSDADTMLKYI 167

GO:0008152 "metabolic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M7T0	PRX2F_ARATH	1, ., 1, 1, ., 1, ., 1, 5	0.7562	0.9901	1.0	yes	no
Q9SDD6	PRX2F_ORYSJ	1, ., 1, 1, ., 1, ., 1, 5	0.7213	0.9753	1.0	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.11.1.15	0.979
3rd Layer	1.11.1	0.983

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: PtrcPrxIIF type IIF peroxiredoxin (203 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	203
cd03013	155	cd03013, PRX5_like, Peroxiredoxin (PRX) family, PR	1e-66
COG0678	165	COG0678, AHP1, Peroxiredoxin [Posttranslational mo	1e-51
cd02971	140	cd02971, PRX_family, Peroxiredoxin (PRX) family; c	7e-26
pfam08534	142	pfam08534, Redoxin, Redoxin	1e-25
pfam00578	124	pfam00578, AhpC-TSA, AhpC/TSA family	2e-08
cd03018	149	cd03018, PRX_AhpE_like, Peroxiredoxin (PRX) family	2e-06

>gnl|CDD|239311 cd03013, PRX5_like, Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

 Score =  201 bits (513), Expect = 1e-66
 Identities = 71/130 (54%), Positives = 93/130 (71%)

Query: 71  DIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAE 130
           ++FKGKKVVIFG+PGA+T  CS QH+P Y  N D+ KAKG+D VICV+VNDP+VM  W +
Sbjct: 25  ELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGK 84

Query: 131 KLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEEAPSK 190
            L AKD I F  D +G F K+L L  DLSAA  G RS+R++  V+DG++K L VEE P  
Sbjct: 85  ALGAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVDDGKVKYLFVEEDPGD 144

Query: 191 MKVSGGDVIL 200
           ++VS  + +L
Sbjct: 145 VEVSSAENVL 154

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases, it is assumed that the oxidized cysteine is directly resolved by an external small-molecule or protein reductant, typical of a 1-cys PRX. In the case of the H. influenza PRX5 hybrid, the resolving glutaredoxin domain is on the same protein chain as PRX. PRX5 homodimers show an A-type interface, similar to atypical 2-cys PRXs. Length = 155

>gnl|CDD|223750 COG0678, AHP1, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

 Score =  163 bits (415), Expect = 1e-51
 Identities = 59/134 (44%), Positives = 83/134 (61%)

Query: 70  KDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWA 129
            D+FKGKKVV+F LPGA+T  CS+ H+P Y    D+FKAKG+D + CV+VND +VMN WA
Sbjct: 32  DDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVNDAFVMNAWA 91

Query: 130 EKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEEAPS 189
           +    +  I+F  D +G F K++ +  D S    G RS R+S  VE+G ++ L +E    
Sbjct: 92  KSQGGEGNIKFIPDGNGEFTKAMGMLVDKSDLGFGVRSWRYSMVVENGVVEKLFIEPPGD 151

Query: 190 KMKVSGGDVILGQI 203
              VS  D +L Q+
Sbjct: 152 PFTVSSADTMLAQL 165

Length = 165

>gnl|CDD|239269 cd02971, PRX_family, Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

 Score = 96.8 bits (242), Expect = 7e-26
 Identities = 38/129 (29%), Positives = 65/129 (50%), Gaps = 9/129 (6%)

Query: 73  FKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKL 132
           FKGK VV+F  P  +T VC+ + + ++++  ++F  KG   V+ V+V+ P+    WAEK 
Sbjct: 20  FKGKWVVLFFYPKDFTPVCTTE-LCAFRDLAEEFA-KGGAEVLGVSVDSPFSHKAWAEKE 77

Query: 133 QAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYV-EDGRIKALNVEEAPSKM 191
              +      D DG F K+  +  + SA   G  + R +  +  DG+I+ + VE  P   
Sbjct: 78  GGLN-FPLLSDPDGEFAKAYGVLIEKSA--GGGLAARATFIIDPDGKIRYVEVEPLP--- 131

Query: 192 KVSGGDVIL 200
                + +L
Sbjct: 132 TGRNAEELL 140

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a cysteine sulfenic acid intermediate. The second step of the reaction, the resolution of the intermediate, distinguishes the different types of PRXs. The presence or absence of a second cysteine (the resolving cysteine) classifies PRXs as either belonging to the 2-cys or 1-cys type. The resolving cysteine of 2-cys PRXs is either on the same chain (atypical) or on the second chain (typical) of a functional homodimer. Structural and motif analysis of this growing family supports the need for a new classification system. The peroxidase activity of PRXs is regulated in vivo by irreversible cysteine over-oxidation into a sulfinic acid, phosphorylation and limited proteolysis. Length = 140

>gnl|CDD|219888 pfam08534, Redoxin, Redoxin

 Score = 95.9 bits (239), Expect = 1e-25
 Identities = 52/159 (32%), Positives = 73/159 (45%), Gaps = 20/159 (12%)

Query: 43  SAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNN 102
             A D +L         V+ +  T  + D FKGKKVV+   PGA+   CS +H   Y   
Sbjct: 3   DKAPDFTLP-------DVALDGKTVSLSD-FKGKKVVLNFWPGAFCPTCSAEHP--YLEK 52

Query: 103 IDKF-KAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAA 161
           + K  KAKG+D V   A NDP+ +  +  K   K       D DG+F K+  L +D    
Sbjct: 53  LSKLYKAKGVDVVAVNASNDPFFVMNFWAKEGLK--YPVLADRDGAFTKAYGLTED---- 106

Query: 162 LLGPRSERWSAYVEDGRIKALNVEEAPSKMKVSGGDVIL 200
             G R+ R+    EDG++  L V   P    VS  + +L
Sbjct: 107 -AGLRTPRYFLIDEDGKVVYLEVGPDPG--DVSDAEAVL 142

This family of redoxins includes peroxiredoxin, thioredoxin and glutaredoxin proteins. Length = 142

>gnl|CDD|216002 pfam00578, AhpC-TSA, AhpC/TSA family

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 2/61 (3%)

Query: 73  FKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKL 132
           +KGK VV+F  P  +T VC+ + +P+  +  ++FK  G+  V+ V+V+ P     +AEKL
Sbjct: 23  YKGKWVVLFFYPKDFTPVCTTE-LPALADLYEEFKKLGV-EVLGVSVDSPESHKKFAEKL 80

Query: 133 Q 133
            
Sbjct: 81  G 81

This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA). Length = 124

>gnl|CDD|239316 cd03018, PRX_AhpE_like, Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 18/69 (26%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 63  NFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDP 122
           N     + +    K VV+   P A+T VC+ + + + +++++ F+A G + V+ ++V+ P
Sbjct: 16  NGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKE-LCALRDSLELFEAAGAE-VLGISVDSP 73

Query: 123 YVMNGWAEK 131
           + +  WAE+
Sbjct: 74  FSLRAWAEE 82

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers. Length = 149

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	203
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	100.0
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	100.0
COG0678	165	AHP1 Peroxiredoxin [Posttranslational modification	100.0
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	99.97
PTZ00137	261	2-Cys peroxiredoxin; Provisional	99.97
PRK13191	215	putative peroxiredoxin; Provisional	99.97
PRK13189	222	peroxiredoxin; Provisional	99.97
PRK13599	215	putative peroxiredoxin; Provisional	99.97
COG0450	194	AhpC Peroxiredoxin [Posttranslational modification	99.97
KOG0541	171	consensus Alkyl hydroperoxide reductase/peroxiredo	99.97
PRK13190	202	putative peroxiredoxin; Provisional	99.97
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	99.97
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	99.97
PRK15000	200	peroxidase; Provisional	99.96
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	99.96
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	99.95
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	99.95
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	99.95
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	99.95
PTZ00253	199	tryparedoxin peroxidase; Provisional	99.95
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	99.95
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	99.95
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	99.94
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	99.94
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	99.94
KOG0855	211	consensus Alkyl hydroperoxide reductase, thiol spe	99.93
KOG0852	196	consensus Alkyl hydroperoxide reductase, thiol spe	99.92
PLN02412	167	probable glutathione peroxidase	99.92
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	99.91
PTZ00256	183	glutathione peroxidase; Provisional	99.91
PTZ00056	199	glutathione peroxidase; Provisional	99.91
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	99.9
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	99.89
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	99.89
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	99.89
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	99.88
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	99.87
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	99.87
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	99.87
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	99.87
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	99.86
KOG0854	224	consensus Alkyl hydroperoxide reductase, thiol spe	99.86
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	99.85
COG2077	158	Tpx Peroxiredoxin [Posttranslational modification,	99.84
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	99.83
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	99.82
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	99.81
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	99.79
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	99.79
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.75
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	99.74
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	99.74
PRK10606	183	btuE putative glutathione peroxidase; Provisional	99.71
PRK13728	181	conjugal transfer protein TrbB; Provisional	99.7
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	99.55
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	99.49
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	99.19
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.18
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.16
PF02630	174	SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam	99.13
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.01
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.0
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	98.98
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	98.96
COG0386	162	BtuE Glutathione peroxidase [Posttranslational mod	98.9
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	98.89
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	98.85
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	98.83
COG1999	207	Uncharacterized protein SCO1/SenC/PrrC, involved i	98.71
PRK09381	109	trxA thioredoxin; Provisional	98.7
PF05988	211	DUF899: Bacterial protein of unknown function (DUF	98.69
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	98.66
PRK10996	139	thioredoxin 2; Provisional	98.65
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	98.61
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	98.6
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	98.58
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	98.57
PF13911	115	AhpC-TSA_2: AhpC/TSA antioxidant enzyme	98.57
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	98.57
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	98.56
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	98.56
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	98.56
PTZ00051	98	thioredoxin; Provisional	98.56
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	98.53
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	98.53
KOG1651	171	consensus Glutathione peroxidase [Posttranslationa	98.5
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	98.49
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	98.48
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	98.47
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	98.43
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	98.43
PF00255	108	GSHPx: Glutathione peroxidase; InterPro: IPR000889	98.42
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	98.37
PHA02278	103	thioredoxin-like protein	98.37
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	98.32
cd02947	93	TRX_family TRX family; composed of two groups: Gro	98.31
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	98.27
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	98.26
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	98.26
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	98.24
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	98.23
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	98.17
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	98.16
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	98.12
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	98.11
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	98.08
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	98.08
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	98.07
COG3118	304	Thioredoxin domain-containing protein [Posttransla	98.04
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	97.99
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	97.99
KOG4498	197	consensus Uncharacterized conserved protein [Funct	97.98
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	97.97
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	97.96
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	97.92
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	97.91
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	97.9
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	97.87
PF13728	215	TraF: F plasmid transfer operon protein	97.87
KOG2792	280	consensus Putative cytochrome C oxidase assembly p	97.86
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	97.84
PTZ00102	477	disulphide isomerase; Provisional	97.83
COG4312	247	Uncharacterized protein conserved in bacteria [Fun	97.79
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	97.76
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	97.65
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	97.65
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	97.65
PTZ00102	477	disulphide isomerase; Provisional	97.57
PLN02309	457	5'-adenylylsulfate reductase	97.55
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	97.49
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	97.48
PTZ00062	204	glutaredoxin; Provisional	97.4
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	97.38
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	97.33
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	97.33
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	97.23
PF05176	252	ATP-synt_10: ATP10 protein; InterPro: IPR007849 Th	97.2
PF04592	238	SelP_N: Selenoprotein P, N terminal region; InterP	97.2
PF09695	160	YtfJ_HI0045: Bacterial protein of unknown function	97.12
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	96.74
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	96.57
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	96.49
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	96.39
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	96.28
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	96.27
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	96.23
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	96.23
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	96.2
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	95.88
PHA02125	75	thioredoxin-like protein	95.87
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	95.86
smart00594	122	UAS UAS domain.	95.74
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	95.51
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	95.18
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	94.92
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	94.76
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	94.71
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	94.63
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	94.19
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	94.13
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	92.81
PRK10329	81	glutaredoxin-like protein; Provisional	92.43
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	92.38
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	92.29
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	92.23
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	91.82
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	91.66
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	91.44
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	91.4
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	91.25
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	91.06
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	90.91
PRK11200	85	grxA glutaredoxin 1; Provisional	90.58
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	90.32
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	90.03
KOG3425	128	consensus Uncharacterized conserved protein [Funct	89.96
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	89.22
PHA03050	108	glutaredoxin; Provisional	88.61
PF13778	118	DUF4174: Domain of unknown function (DUF4174)	88.59
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	88.15
PRK10638	83	glutaredoxin 3; Provisional	88.08
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	85.93
PF07976	169	Phe_hydrox_dim: Phenol hydroxylase, C-terminal dim	85.1
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	83.38
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	83.38
COG2179	175	Predicted hydrolase of the HAD superfamily [Genera	83.13
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	82.94
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	81.5
cd03032	115	ArsC_Spx Arsenate Reductase (ArsC) family, Spx sub	80.47
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	80.26
PTZ00062	204	glutaredoxin; Provisional	80.24

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.8e-38  Score=247.25  Aligned_cols=149  Identities=21%  Similarity=0.328  Sum_probs=132.0

Q ss_pred             ccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCc
Q 028808           33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID  112 (203)
Q Consensus        33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~  112 (203)
                      +++++|++    ||||+|++.+|         +.++|++ ++||+|||+|||.+|||+|+.| +++|++++++|++.|+.
T Consensus         2 ~~l~~G~~----aPdF~Lp~~~g---------~~v~Lsd-~~Gk~VVLyFYPk~~TpgCT~E-a~~Frd~~~ef~~~~a~   66 (157)
T COG1225           2 MMLKVGDK----APDFELPDQDG---------ETVSLSD-LRGKPVVLYFYPKDFTPGCTTE-ACDFRDLLEEFEKLGAV   66 (157)
T ss_pred             CcCCCCCc----CCCeEeecCCC---------CEEehHH-hcCCcEEEEECCCCCCCcchHH-HHHHHHHHHHHHhCCCE
Confidence            57899999    79999999986         7899999 5999999999999999999999 99999999999999998


Q ss_pred             EEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccC-CCCcceEEEEEe-CCEEEEEEeecCCCC
Q 028808          113 SVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALL-GPRSERWSAYVE-DGRIKALNVEEAPSK  190 (203)
Q Consensus       113 ~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~-~~~~~r~tfIId-dG~I~~~~~~~~~~~  190 (203)
                       |+|||+|++.++++|+++++++  ||+|||++++++++||+.......|- .....|+||||| +|+|+++|....+  
T Consensus        67 -V~GIS~Ds~~~~~~F~~k~~L~--f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~--  141 (157)
T COG1225          67 -VLGISPDSPKSHKKFAEKHGLT--FPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKV--  141 (157)
T ss_pred             -EEEEeCCCHHHHHHHHHHhCCC--ceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEecCCCC--
Confidence             9999999999999999999997  99999999999999999876543221 123689999999 9999999954433  


Q ss_pred             cccCCHHHHHhcC
Q 028808          191 MKVSGGDVILGQI  203 (203)
Q Consensus       191 ~~~~~a~~vL~~l  203 (203)
                        ..|+++||+.|
T Consensus       142 --~~h~~~vl~~l  152 (157)
T COG1225         142 --KGHADEVLAAL  152 (157)
T ss_pred             --cccHHHHHHHH
Confidence              46999998764

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=100.00  E-value=4.2e-36  Score=237.53  Aligned_cols=154  Identities=48%  Similarity=0.802  Sum_probs=134.6

Q ss_pred             CCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCC-cEEE
Q 028808           37 VGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGI-DSVI  115 (203)
Q Consensus        37 ~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv-~~vi  115 (203)
                      +|++    ||+|++++.++ .+|     +.++|+++++||++||+|||++|||+|+.||++.|++.+++|+++|+ . |+
T Consensus         1 vG~~----aPdF~l~~~~~-~~g-----~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~-V~   69 (155)
T cd03013           1 VGDK----LPNVTLFEYVP-GPP-----NPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDE-VI   69 (155)
T ss_pred             CCCc----CCCeEeeeecc-CCC-----ceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCE-EE
Confidence            5777    69999998751 012     78999996588899999999999999999999999999999999999 6 99


Q ss_pred             EEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEeCCEEEEEEeecCCCCcccCC
Q 028808          116 CVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEEAPSKMKVSG  195 (203)
Q Consensus       116 ~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~~~~~~~~~~  195 (203)
                      +||.|+++++++|++++++..+||+|||++++++++||+..+....|++.++.|++||||+|+|+|+++.+++.++++++
T Consensus        70 ~iS~D~~~~~~~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId~g~I~~~~~~~~~~~~~~~~  149 (155)
T cd03013          70 CVSVNDPFVMKAWGKALGAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVDDGKVKYLFVEEDPGDVEVSS  149 (155)
T ss_pred             EEECCCHHHHHHHHHhhCCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEECCCEEEEEEEecCCCCccccC
Confidence            99999999999999999981149999999999999999986543234444568999999999999999999998999999


Q ss_pred             HHHHHh
Q 028808          196 GDVILG  201 (203)
Q Consensus       196 a~~vL~  201 (203)
                      ++.||+
T Consensus       150 ~~~~~~  155 (155)
T cd03013         150 AENVLK  155 (155)
T ss_pred             HHHhcC
Confidence            999985

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.4e-32  Score=209.65  Aligned_cols=163  Identities=39%  Similarity=0.682  Sum_probs=148.4

Q ss_pred             ccccCCCccccCCCceEEecccccc--CCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcC
Q 028808           33 ASVAVGSDIVSAAQDVSLQKARTWD--EGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKG  110 (203)
Q Consensus        33 ~~~~~G~~~~~~APdf~l~~~~g~~--~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~g  110 (203)
                      |++++|+++    |+.++....+++  +|    .+.++..++++||+|||+..||+|+|+|+..|+|.|.+++++|+++|
T Consensus         1 m~~~vg~kl----P~vtf~tr~~~~~~~~----~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kG   72 (165)
T COG0678           1 MTIMVGKKL----PAVTFKTRVGDETADG----WVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKG   72 (165)
T ss_pred             CccccCCcC----CceEeEEeeccccCCC----cccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcC
Confidence            467899996    999998764311  22    36789999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEeCCEEEEEEeecCCCC
Q 028808          111 IDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEEAPSK  190 (203)
Q Consensus       111 v~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~~~~~  190 (203)
                      +++|++||+||++.+.+|++..+...+..+++|.++++.|++|+..+....|+|.|++|+.+||+||+|.+.++++.++.
T Consensus        73 VD~I~cVSVND~FVm~AWak~~g~~~~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV~nGvV~~~~iE~p~~~  152 (165)
T COG0678          73 VDEIYCVSVNDAFVMNAWAKSQGGEGNIKFIPDGNGEFTKAMGMLVDKSDLGFGVRSWRYSMVVENGVVEKLFIEPPGDP  152 (165)
T ss_pred             CceEEEEEeCcHHHHHHHHHhcCCCccEEEecCCCchhhhhcCceeecccCCcceeeeeEEEEEeCCeEEEEEecCCCCc
Confidence            99999999999999999999999876899999999999999999998887888999999999999999999999996666


Q ss_pred             cccCCHHHHHhcC
Q 028808          191 MKVSGGDVILGQI  203 (203)
Q Consensus       191 ~~~~~a~~vL~~l  203 (203)
                      +++++|+.+|++|
T Consensus       153 ~~vS~a~~mL~~L  165 (165)
T COG0678         153 FTVSSADTMLAQL  165 (165)
T ss_pred             eeecCHHHHHhcC
Confidence            9999999999987

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=99.97  E-value=2.3e-31  Score=216.68  Aligned_cols=146  Identities=20%  Similarity=0.353  Sum_probs=124.8

Q ss_pred             ccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEE
Q 028808           35 VAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSV  114 (203)
Q Consensus        35 ~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~v  114 (203)
                      ..+|++    ||+|+++...+      +.+++++|++ ++||++||+|||++|||+|+.| ++.|++++++|+++|++ |
T Consensus         2 ~~~~~~----~p~f~~~~~~~------g~~~~v~L~d-~~Gk~vvL~F~P~~~~p~C~~e-l~~l~~~~~~f~~~g~~-v   68 (187)
T PRK10382          2 SLINTK----IKPFKNQAFKN------GEFIEVTEKD-TEGRWSVFFFYPADFTFVCPTE-LGDVADHYEELQKLGVD-V   68 (187)
T ss_pred             CccCCc----CCCcEEEEEeC------CcceEEEHHH-hCCCeEEEEEECCCCCCcCHHH-HHHHHHHHHHHHhCCCE-E
Confidence            568999    69999998642      3458999999 5999999999999999999999 99999999999999999 9


Q ss_pred             EEEecCCHHHHHHHHHHh----CCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCC
Q 028808          115 ICVAVNDPYVMNGWAEKL----QAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPS  189 (203)
Q Consensus       115 i~IS~d~~~~~~~~~~~~----~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~  189 (203)
                      ++||.|+++.+++|+++.    +++  ||+++|++++++++||+..+..  |   .+.|++|||| +|+|+++++.+.+.
T Consensus        69 igIS~D~~~~~~a~~~~~~~~~~l~--fpllsD~~~~ia~~ygv~~~~~--g---~~~r~tfIID~~G~I~~~~~~~~~~  141 (187)
T PRK10382         69 YSVSTDTHFTHKAWHSSSETIAKIK--YAMIGDPTGALTRNFDNMREDE--G---LADRATFVVDPQGIIQAIEVTAEGI  141 (187)
T ss_pred             EEEeCCCHHHHHHHHHhhccccCCc--eeEEEcCchHHHHHcCCCcccC--C---ceeeEEEEECCCCEEEEEEEeCCCC
Confidence            999999999999999874    675  9999999999999999975321  2   2569999999 99999999987554


Q ss_pred             CcccCCHHHHHhcC
Q 028808          190 KMKVSGGDVILGQI  203 (203)
Q Consensus       190 ~~~~~~a~~vL~~l  203 (203)
                      +   .+++++|+.|
T Consensus       142 ~---~~~~eil~~l  152 (187)
T PRK10382        142 G---RDASDLLRKI  152 (187)
T ss_pred             C---CCHHHHHHHH
Confidence            3   4777777653

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=99.97  E-value=1.1e-30  Score=222.18  Aligned_cols=154  Identities=21%  Similarity=0.307  Sum_probs=127.8

Q ss_pred             ccccccccccccCCCccccCCCceEEec-cccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhH
Q 028808           25 IPTSSRAYASVAVGSDIVSAAQDVSLQK-ARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNI  103 (203)
Q Consensus        25 ~~~~~~~~~~~~~G~~~~~~APdf~l~~-~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~  103 (203)
                      .+.......++.+|++    +|+|++++ .+|       +.+.++|+++++||++||+|||++|||+|+.| ++.|++++
T Consensus        58 ~~~~~~~~~~~~vGd~----aPdF~l~~~~~g-------~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~E-l~~l~~~~  125 (261)
T PTZ00137         58 SEGLCNTVTSSLVGKL----MPSFKGTALLND-------DLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSE-LLGFSERL  125 (261)
T ss_pred             CcccccccccccCCCC----CCCCEeecccCC-------CceEEeHHHHcCCCeEEEEEECCCCCCCCHHH-HHHHHHHH
Confidence            3333444456789999    69999987 343       22679999965899999999999999999999 99999999


Q ss_pred             HHHHHcCCcEEEEEecCCHHHHHHHHHH-------hCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-
Q 028808          104 DKFKAKGIDSVICVAVNDPYVMNGWAEK-------LQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-  175 (203)
Q Consensus       104 ~~f~~~gv~~vi~IS~d~~~~~~~~~~~-------~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-  175 (203)
                      ++|+++|++ |+|||.|+++.+++|+++       .+++  ||+++|++++++++||+...   .|   .+.|++|||| 
T Consensus       126 ~ef~~~gv~-VigIS~Ds~~~h~aw~~~~~~~~g~~~l~--fPlLsD~~~~iakayGv~~~---~g---~a~R~tFIID~  196 (261)
T PTZ00137        126 KEFEERGVK-VLGVSVDSPFSHKAWKELDVRQGGVSPLK--FPLFSDISREVSKSFGLLRD---EG---FSHRASVLVDK  196 (261)
T ss_pred             HHHHHCCCE-EEEEECCCHHHHHHHHhhhhhhccccCcc--eEEEEcCChHHHHHcCCCCc---CC---ceecEEEEECC
Confidence            999999999 999999999999999874       4565  99999999999999999753   12   3679999999 


Q ss_pred             CCEEEEEEeecCCCCcccCCHHHHHhc
Q 028808          176 DGRIKALNVEEAPSKMKVSGGDVILGQ  202 (203)
Q Consensus       176 dG~I~~~~~~~~~~~~~~~~a~~vL~~  202 (203)
                      +|+|+++++.+.+.+   .+++++|+.
T Consensus       197 dG~I~~~~~~~~~~g---r~v~eiLr~  220 (261)
T PTZ00137        197 AGVVKHVAVYDLGLG---RSVDETLRL  220 (261)
T ss_pred             CCEEEEEEEeCCCCC---CCHHHHHHH
Confidence            999999999876543   367777654

>PRK13191 putative peroxiredoxin; Provisional

Probab=99.97  E-value=7.3e-31  Score=217.97  Aligned_cols=144  Identities=19%  Similarity=0.306  Sum_probs=121.0

Q ss_pred             cccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcE
Q 028808           34 SVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDS  113 (203)
Q Consensus        34 ~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~  113 (203)
                      ++.+|++    ||+|++.+.+|         + +++.+.++||++||+|||++|||+|+.| +++|++++++|+++|++ 
T Consensus         6 ~~~iG~~----aPdF~l~~~~G---------~-~~l~~~~~GK~vvLff~pa~ftpvC~tE-l~~l~~~~~ef~~~g~~-   69 (215)
T PRK13191          6 IPLIGEK----FPEMEVITTHG---------K-IKLPDDYKGRWFVLFSHPGDFTPVCTTE-FYSFAKKYEEFKKLNTE-   69 (215)
T ss_pred             cccCCCc----CCCCEeecCCC---------C-EEcHHHhCCCcEEEEEeCCCCCCcCHHH-HHHHHHHHHHHHHCCCE-
Confidence            4678999    69999998864         4 6675546999999999999999999999 99999999999999999 


Q ss_pred             EEEEecCCHHHHHHHHHH------hCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808          114 VICVAVNDPYVMNGWAEK------LQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       114 vi~IS~d~~~~~~~~~~~------~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~  186 (203)
                      |++||+|+.++|++|++.      ++++  ||+++|++++++++||+.....    ...+.|++|||| +|+|+++++++
T Consensus        70 VigvS~Ds~~~h~aw~~~~~~~~~~~i~--fPllsD~~~~ia~~ygv~~~~~----~~~~~r~tfIID~~G~Ir~~~~~~  143 (215)
T PRK13191         70 LIGLSVDSNISHIEWVMWIEKNLKVEVP--FPIIADPMGNVAKRLGMIHAES----STATVRAVFIVDDKGTVRLILYYP  143 (215)
T ss_pred             EEEEECCCHHHHHHHHhhHHHhcCCCCc--eEEEECCchHHHHHcCCccccc----CCceeEEEEEECCCCEEEEEEecC
Confidence            999999999999999762      3454  9999999999999999975321    113679999999 99999999988


Q ss_pred             CCCCcccCCHHHHHhc
Q 028808          187 APSKMKVSGGDVILGQ  202 (203)
Q Consensus       187 ~~~~~~~~~a~~vL~~  202 (203)
                      .+.+   .+++++|+.
T Consensus       144 ~~~g---r~~~eilr~  156 (215)
T PRK13191        144 MEIG---RNIDEILRA  156 (215)
T ss_pred             CCCC---CCHHHHHHH
Confidence            6544   377777664

>PRK13189 peroxiredoxin; Provisional

Probab=99.97  E-value=1.6e-30  Score=216.84  Aligned_cols=146  Identities=17%  Similarity=0.325  Sum_probs=121.1

Q ss_pred             ccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCc
Q 028808           33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID  112 (203)
Q Consensus        33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~  112 (203)
                      .++.+|++    ||+|++++..|          .++++++++||++||+|||++|||+|.+| +++|++++++|+++|++
T Consensus         7 ~~~~vG~~----aPdF~~~~~~g----------~~~l~d~~~Gk~vvL~f~pa~fcpvC~tE-l~~l~~~~~ef~~~~v~   71 (222)
T PRK13189          7 RMPLIGDK----FPEFEVKTTHG----------PIKLPDDYKGKWFVLFSHPADFTPVCTTE-FVAFQKRYDEFRELNTE   71 (222)
T ss_pred             ccccCCCc----CCCcEeEcCCC----------CEeeHHHhCCCeEEEEEeCCCCCCCCHHH-HHHHHHHHHHHHHcCCE
Confidence            35778999    69999998864          47888866999999999999999999999 99999999999999998


Q ss_pred             EEEEEecCCHHHHHHHHHHh------CCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEee
Q 028808          113 SVICVAVNDPYVMNGWAEKL------QAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVE  185 (203)
Q Consensus       113 ~vi~IS~d~~~~~~~~~~~~------~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~  185 (203)
                       ||+||+|+++.+++|+++.      +++  ||+++|++++++++||+.....    +..+.|++|||| +|+|++++++
T Consensus        72 -VigvS~D~~~~h~aw~~~~~~~~g~~i~--fPllsD~~~~ia~~ygv~~~~~----~~~~~r~tfIID~~G~Ir~~~~~  144 (222)
T PRK13189         72 -LIGLSIDQVFSHIKWVEWIKEKLGVEIE--FPIIADDRGEIAKKLGMISPGK----GTNTVRAVFIIDPKGIIRAILYY  144 (222)
T ss_pred             -EEEEECCCHHHHHHHHHhHHHhcCcCcc--eeEEEcCccHHHHHhCCCcccc----CCCceeEEEEECCCCeEEEEEec
Confidence             9999999999999998862      354  9999999999999999975321    112679999999 9999999998


Q ss_pred             cCCCCcccCCHHHHH
Q 028808          186 EAPSKMKVSGGDVIL  200 (203)
Q Consensus       186 ~~~~~~~~~~a~~vL  200 (203)
                      +.+.+...++..++|
T Consensus       145 ~~~~gr~~~eilr~l  159 (222)
T PRK13189        145 PQEVGRNMDEILRLV  159 (222)
T ss_pred             CCCCCCCHHHHHHHH
Confidence            876543333333333

>PRK13599 putative peroxiredoxin; Provisional

Probab=99.97  E-value=1.5e-30  Score=216.06  Aligned_cols=142  Identities=19%  Similarity=0.312  Sum_probs=120.0

Q ss_pred             cCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEE
Q 028808           36 AVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVI  115 (203)
Q Consensus        36 ~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi  115 (203)
                      .+|++    ||+|++.+.+|         +...+++ ++||++||++||++|||+|+.| ++.|++++++|+++|++ ||
T Consensus         3 ~~Gd~----aPdF~l~t~~G---------~~~~~~~-~~Gk~vVL~~~pa~~tpvCt~E-l~~l~~~~~~f~~~gv~-vi   66 (215)
T PRK13599          3 LLGEK----FPSMEVVTTQG---------VKRLPED-YAGKWFVLFSHPADFTPVCTTE-FVEFARKANDFKELNTE-LI   66 (215)
T ss_pred             CCCCC----CCCCEeECCCC---------cEecHHH-HCCCeEEEEEeCCCCCCcCHHH-HHHHHHHHHHHHHCCCE-EE
Confidence            68998    69999998875         6667788 5999889999999999999999 99999999999999998 99


Q ss_pred             EEecCCHHHHHHHHHH------hCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCC
Q 028808          116 CVAVNDPYVMNGWAEK------LQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAP  188 (203)
Q Consensus       116 ~IS~d~~~~~~~~~~~------~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~  188 (203)
                      |||+|+++++++|++.      .+++  ||+++|++++++++||+.....    +..+.|++|||| +|+|+++++.+..
T Consensus        67 gIS~D~~~~~~~w~~~i~~~~~~~i~--fPil~D~~~~va~~yg~~~~~~----~~~~~R~tfIID~dG~Ir~~~~~p~~  140 (215)
T PRK13599         67 GLSVDQVFSHIKWVEWIKDNTNIAIP--FPVIADDLGKVSNQLGMIHPGK----GTNTVRAVFIVDDKGTIRLIMYYPQE  140 (215)
T ss_pred             EEeCCCHHHHHHHHHhHHHhcCCCCc--eeEEECCCchHHHHcCCCccCC----CCceeeEEEEECCCCEEEEEEEcCCC
Confidence            9999999999999763      3565  9999999999999999975321    223579999999 9999999987654


Q ss_pred             CCcccCCHHHHHhc
Q 028808          189 SKMKVSGGDVILGQ  202 (203)
Q Consensus       189 ~~~~~~~a~~vL~~  202 (203)
                      .+   .+.+++|+.
T Consensus       141 ~g---r~~~eilr~  151 (215)
T PRK13599        141 VG---RNVDEILRA  151 (215)
T ss_pred             CC---CCHHHHHHH
Confidence            33   467777654

>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.5e-30  Score=209.78  Aligned_cols=151  Identities=19%  Similarity=0.310  Sum_probs=126.6

Q ss_pred             ccccCCCccccCCCceEEecc-ccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCC
Q 028808           33 ASVAVGSDIVSAAQDVSLQKA-RTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGI  111 (203)
Q Consensus        33 ~~~~~G~~~~~~APdf~l~~~-~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv  111 (203)
                      +++.+|++    ||+|++... .|      +.+.+++|+++ .|||+||+|||++|+|+|.+| +..|.+.|++|+++|+
T Consensus         1 ~~~lIg~~----aP~F~~~a~~~~------~~~~~i~l~d~-~gkw~VLff~P~DFTfVCpTE-i~af~~~y~eF~~~g~   68 (194)
T COG0450           1 MMSLIGKK----APDFTANAVLGG------EIFEEITLSDY-YGKWVVLFFYPADFTFVCPTE-IIAFAKRYEEFQKRGV   68 (194)
T ss_pred             CccccCCc----CCCcEEEEEecC------ceeeEEechhh-cCcEEEEEeccCCCCccCcch-HHHHHhhhHHHHHcCC
Confidence            35778999    699999887 43      23569999995 669999999999999999999 9999999999999999


Q ss_pred             cEEEEEecCCHHHHHHHHHH----hCCC-CceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEee
Q 028808          112 DSVICVAVNDPYVMNGWAEK----LQAK-DVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVE  185 (203)
Q Consensus       112 ~~vi~IS~d~~~~~~~~~~~----~~l~-~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~  185 (203)
                      + |||+|+|+.++|.+|.+.    .++. .+||+++|++++++++||+..+..  |.   +.|++|||| +|+|+++.++
T Consensus        69 e-VigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~--g~---a~R~~FIIDp~g~ir~~~v~  142 (194)
T COG0450          69 E-VIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEE--GL---ALRGTFIIDPDGVIRHILVN  142 (194)
T ss_pred             E-EEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCC--Cc---ceeEEEEECCCCeEEEEEEe
Confidence            9 999999999999999887    4532 259999999999999999987532  22   689999999 9999999999


Q ss_pred             cCCCCcccCCHHHHHh
Q 028808          186 EAPSKMKVSGGDVILG  201 (203)
Q Consensus       186 ~~~~~~~~~~a~~vL~  201 (203)
                      +.+-+-..+..-++++
T Consensus       143 ~~~iGRn~dEilR~id  158 (194)
T COG0450         143 PLTIGRNVDEILRVID  158 (194)
T ss_pred             cCCCCcCHHHHHHHHH
Confidence            8875533334444444

>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.3e-30  Score=201.14  Aligned_cols=168  Identities=44%  Similarity=0.779  Sum_probs=146.7

Q ss_pred             cccccccccCCCccccCCCceEEeccccccCCCCCCce--eeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHH
Q 028808           28 SSRAYASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFA--TTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDK  105 (203)
Q Consensus        28 ~~~~~~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~--~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~  105 (203)
                      +.+.++++.+|+.+    |+-++.-...    .+.+.+  +++++++++||++||+-.|++|+|+|...|+|.|.+..++
T Consensus         2 s~~~~a~i~vGd~~----p~~~is~~~~----~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~e   73 (171)
T KOG0541|consen    2 SSRVMAPIAVGDTL----PSGTISLFED----EPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADE   73 (171)
T ss_pred             CccccccccccCcc----ccccchhhcc----CccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHH
Confidence            34667889999996    8833221110    011113  8999999999999999999999999999999999999999


Q ss_pred             HHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEeCCEEEEEEee
Q 028808          106 FKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVE  185 (203)
Q Consensus       106 f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~  185 (203)
                      |+++|+++||+||+|||+.+++|.+.++.+....+++|+++++.+++|+..+....+++.|+.|+.++++||+|.+..++
T Consensus        74 lksKGVd~iicvSVnDpFv~~aW~k~~g~~~~V~f~aD~~g~ftk~lgleld~~d~~~g~RS~R~a~vvengkV~~~nvE  153 (171)
T KOG0541|consen   74 LKSKGVDEIICVSVNDPFVMKAWAKSLGANDHVKFVADPAGEFTKSLGLELDLSDKLLGVRSRRYALVVENGKVTVVNVE  153 (171)
T ss_pred             HHhcCCcEEEEEecCcHHHHHHHHhhcCccceEEEEecCCCceeeeccceeeeccccCccccccEEEEEeCCeEEEEEec
Confidence            99999999999999999999999999998667999999999999999998876666678899999999999999999999


Q ss_pred             cCCCCcccCCHHHHHhcC
Q 028808          186 EAPSKMKVSGGDVILGQI  203 (203)
Q Consensus       186 ~~~~~~~~~~a~~vL~~l  203 (203)
                      ++++++++++|+.||.+|
T Consensus       154 ~~g~~~t~ssa~~il~~l  171 (171)
T KOG0541|consen  154 EGGTDFTVSSAEDILKQL  171 (171)
T ss_pred             cCCCceEEecHHHHhhcC
Confidence            998889999999999986

>PRK13190 putative peroxiredoxin; Provisional

Probab=99.97  E-value=3.4e-30  Score=211.95  Aligned_cols=146  Identities=18%  Similarity=0.337  Sum_probs=119.9

Q ss_pred             cccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcE
Q 028808           34 SVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDS  113 (203)
Q Consensus        34 ~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~  113 (203)
                      ++++|++    ||+|++.+..|          .++|++ ++||++||+|||++|||+|+.| ++.|++++++|+++|++ 
T Consensus         1 ~~~vG~~----aP~F~~~~~~g----------~v~l~d-~~gk~vvL~~~p~~~cp~C~~E-l~~l~~~~~~f~~~~~~-   63 (202)
T PRK13190          1 PVKLGQK----APDFTVNTTKG----------PIDLSK-YKGKWVLLFSHPADFTPVCTTE-FIAFSRRYEDFKKLGVE-   63 (202)
T ss_pred             CCCCCCC----CCCcEEecCCC----------cEeHHH-hCCCEEEEEEEcCCCCCCCHHH-HHHHHHHHHHHHHCCCE-
Confidence            3678999    69999998653          599999 4999888999999999999999 99999999999999999 


Q ss_pred             EEEEecCCHHHHHHHHHH----hCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCC
Q 028808          114 VICVAVNDPYVMNGWAEK----LQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAP  188 (203)
Q Consensus       114 vi~IS~d~~~~~~~~~~~----~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~  188 (203)
                      |++||+|+.+.+++|+++    .++..+||+++|++++++++||+.....  |   .+.|++|||| +|+|+++++++.+
T Consensus        64 vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~--g---~~~p~~fiId~~G~I~~~~~~~~~  138 (202)
T PRK13190         64 LVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREYNLIDENS--G---ATVRGVFIIDPNQIVRWMIYYPAE  138 (202)
T ss_pred             EEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcCCccccC--C---cEEeEEEEECCCCEEEEEEEeCCC
Confidence            999999999999998764    4532249999999999999999965322  2   2579999999 9999999998766


Q ss_pred             CCcccCCHHHHHh
Q 028808          189 SKMKVSGGDVILG  201 (203)
Q Consensus       189 ~~~~~~~a~~vL~  201 (203)
                      .+.+.++..++|+
T Consensus       139 ~gr~~~ellr~l~  151 (202)
T PRK13190        139 TGRNIDEIIRITK  151 (202)
T ss_pred             CCCCHHHHHHHHH
Confidence            5433334444443

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=99.97  E-value=1.4e-29  Score=208.30  Aligned_cols=141  Identities=18%  Similarity=0.272  Sum_probs=117.9

Q ss_pred             CCCccccCCCceEEeccccccCCCCCCceeeecccccCC-CeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEE
Q 028808           37 VGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKG-KKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVI  115 (203)
Q Consensus        37 ~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~g-k~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi  115 (203)
                      +|++    ||+|++.+.+|          .++|+++ +| |++||+|||++|||+|+.| +++|++++++|+++|++ |+
T Consensus         1 vG~~----aP~F~~~~~~g----------~~~l~d~-~g~k~vvlf~~pa~~cp~C~~e-l~~l~~~~~~f~~~gv~-vi   63 (203)
T cd03016           1 LGDT----APNFEADTTHG----------PIKFHDY-LGDSWGILFSHPADFTPVCTTE-LGAFAKLAPEFKKRNVK-LI   63 (203)
T ss_pred             CcCC----CCCeEEecCCC----------cEeHHHH-cCCCEEEEEEecCCCCCcCHHH-HHHHHHHHHHHHHcCCE-EE
Confidence            4777    69999998763          4899995 77 7889999999999999999 99999999999999998 99


Q ss_pred             EEecCCHHHHHHHHHH------hCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCC
Q 028808          116 CVAVNDPYVMNGWAEK------LQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAP  188 (203)
Q Consensus       116 ~IS~d~~~~~~~~~~~------~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~  188 (203)
                      +||.|+.+.+++|.++      .+++  ||+++|++++++++||+.....  +. ..+.|++|||| +|+|+++++++.+
T Consensus        64 gvS~D~~~~~~~~~~~i~~~~~~~~~--fpil~D~~~~ia~~yg~~~~~~--~~-~~~~r~~fiID~~G~I~~~~~~~~~  138 (203)
T cd03016          64 GLSVDSVESHIKWIEDIEEYTGVEIP--FPIIADPDREVAKLLGMIDPDA--GS-TLTVRAVFIIDPDKKIRLILYYPAT  138 (203)
T ss_pred             EEECCCHHHHHHHHhhHHHhcCCCCc--eeEEECchHHHHHHcCCccccC--CC-CceeeEEEEECCCCeEEEEEecCCC
Confidence            9999999999999876      5675  9999999999999999975321  11 23579999999 9999999998765


Q ss_pred             CCcccCCHHHHHhc
Q 028808          189 SKMKVSGGDVILGQ  202 (203)
Q Consensus       189 ~~~~~~~a~~vL~~  202 (203)
                      .+   .+.+++|+.
T Consensus       139 ~g---r~~~ell~~  149 (203)
T cd03016         139 TG---RNFDEILRV  149 (203)
T ss_pred             CC---CCHHHHHHH
Confidence            43   245555543

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>TIGR03137 AhpC peroxiredoxin

Probab=99.97  E-value=1.9e-29  Score=204.97  Aligned_cols=144  Identities=19%  Similarity=0.373  Sum_probs=120.6

Q ss_pred             cCCCccccCCCceEEecc-ccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEE
Q 028808           36 AVGSDIVSAAQDVSLQKA-RTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSV  114 (203)
Q Consensus        36 ~~G~~~~~~APdf~l~~~-~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~v  114 (203)
                      .+|++    ||+|++++. +|       ++..+++++ ++||++||+|||++|||+|+.| +++|++++++|+++|++ |
T Consensus         3 ~~G~~----aP~f~l~~~~~g-------~~~~~sl~d-~~Gk~vvl~F~p~~~cp~C~~e-l~~l~~~~~~~~~~gv~-v   68 (187)
T TIGR03137         3 LINTE----IKPFKATAYHNG-------EFVEVTDED-VKGKWSVFFFYPADFTFVCPTE-LEDLADKYAELKKLGVE-V   68 (187)
T ss_pred             ccCCc----CCCcEeeeccCC-------ceeEecHHH-HCCCEEEEEEECCCcCCcCHHH-HHHHHHHHHHHHhcCCc-E
Confidence            56888    699999984 43       124789999 5999888888889999999999 99999999999999999 9


Q ss_pred             EEEecCCHHHHHHHHHHh----CCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCC
Q 028808          115 ICVAVNDPYVMNGWAEKL----QAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPS  189 (203)
Q Consensus       115 i~IS~d~~~~~~~~~~~~----~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~  189 (203)
                      |+||.|+++.+++|++..    +++  ||+++|++++++++||+.....  |+   ..|++|||| +|+|+++++...+.
T Consensus        69 i~VS~D~~~~~~~~~~~~~~~~~l~--fpllsD~~~~~a~~~gv~~~~~--g~---~~p~tfiID~~G~I~~~~~~~~~~  141 (187)
T TIGR03137        69 YSVSTDTHFVHKAWHDTSEAIGKIT--YPMLGDPTGVLTRNFGVLIEEA--GL---ADRGTFVIDPEGVIQAVEITDNGI  141 (187)
T ss_pred             EEEeCCCHHHHHHHHhhhhhccCcc--eeEEECCccHHHHHhCCcccCC--Cc---eeeEEEEECCCCEEEEEEEeCCCC
Confidence            999999999999998875    465  9999999999999999975421  22   469999999 99999999986553


Q ss_pred             CcccCCHHHHHhcC
Q 028808          190 KMKVSGGDVILGQI  203 (203)
Q Consensus       190 ~~~~~~a~~vL~~l  203 (203)
                      +   .+++++|+.|
T Consensus       142 ~---~~~~~ll~~l  152 (187)
T TIGR03137       142 G---RDASELLRKI  152 (187)
T ss_pred             C---CCHHHHHHHH
Confidence            2   4888887753

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>PRK15000 peroxidase; Provisional

Probab=99.96  E-value=5e-29  Score=204.81  Aligned_cols=149  Identities=20%  Similarity=0.326  Sum_probs=119.7

Q ss_pred             ccCCCccccCCCceEEeccccccCCCCCCc-eeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcE
Q 028808           35 VAVGSDIVSAAQDVSLQKARTWDEGVSSNF-ATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDS  113 (203)
Q Consensus        35 ~~~G~~~~~~APdf~l~~~~g~~~G~~~~~-~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~  113 (203)
                      ..+|++    ||+|++.+..|  +|   +. ..++|+++++||++||+|||++|||+|+.| +++|++++++|+++|++ 
T Consensus         2 ~~vg~~----aPdF~~~~~~~--~g---~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~E-l~~l~~~~~~f~~~g~~-   70 (200)
T PRK15000          2 VLVTRQ----APDFTAAAVLG--SG---EIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSE-LIAFDKRYEEFQKRGVE-   70 (200)
T ss_pred             CcCCCc----CCCCEeecccC--CC---ceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHH-HHHHHHHHHHHHHCCCE-
Confidence            347888    69999998743  12   11 246777755899999998999999999999 99999999999999999 


Q ss_pred             EEEEecCCHHHHHHHHHH----hCC-CCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecC
Q 028808          114 VICVAVNDPYVMNGWAEK----LQA-KDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEA  187 (203)
Q Consensus       114 vi~IS~d~~~~~~~~~~~----~~l-~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~  187 (203)
                      ||+||.|+++.+++|.+.    .++ +.+||+++|++++++++||+.....  |   .+.|++|||| +|+|+++++++.
T Consensus        71 vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~--g---~~~r~tfiID~~G~I~~~~~~~~  145 (200)
T PRK15000         71 VVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDE--G---VALRGSFLIDANGIVRHQVVNDL  145 (200)
T ss_pred             EEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCC--C---cEEeEEEEECCCCEEEEEEecCC
Confidence            999999999999999765    342 1149999999999999999975422  2   2579999999 999999999887


Q ss_pred             CCCcccCCHHHHHhc
Q 028808          188 PSKMKVSGGDVILGQ  202 (203)
Q Consensus       188 ~~~~~~~~a~~vL~~  202 (203)
                      +.+   .+.+++|+.
T Consensus       146 ~~g---r~~~eilr~  157 (200)
T PRK15000        146 PLG---RNIDEMLRM  157 (200)
T ss_pred             CCC---CCHHHHHHH
Confidence            654   366666654

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=99.96  E-value=3e-28  Score=194.65  Aligned_cols=145  Identities=18%  Similarity=0.303  Sum_probs=119.6

Q ss_pred             cccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCC-CCCCCccchhhHHHhHHHHHHcCCc
Q 028808           34 SVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAY-TGVCSNQHVPSYKNNIDKFKAKGID  112 (203)
Q Consensus        34 ~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~-cp~C~~ehl~~l~~~~~~f~~~gv~  112 (203)
                      .+++|++    +|+|++++.+|         +.++|++ ++||++ |++||++| ||+|+.| +|.|++++++|  .|++
T Consensus        17 ~~~~G~~----~P~f~l~~~~g---------~~v~l~~-~~Gk~v-vl~f~~s~~cp~C~~e-~~~l~~~~~~~--~~~~   78 (167)
T PRK00522         17 LPQVGDK----APDFTLVANDL---------SDVSLAD-FAGKRK-VLNIFPSIDTGVCATS-VRKFNQEAAEL--DNTV   78 (167)
T ss_pred             CCCCCCC----CCCeEEEcCCC---------cEEehHH-hCCCEE-EEEEEcCCCCCccHHH-HHHHHHHHHHc--CCcE
Confidence            5778999    69999999875         8899999 599854 55666666 9999999 99999999998  3898


Q ss_pred             EEEEEecCCHHHHHHHHHHhCCCCceEEEeeC-CchHHHHcCCccccc-cccCCCCcceEEEEEe-CCEEEEEEeecCCC
Q 028808          113 SVICVAVNDPYVMNGWAEKLQAKDVIEFYGDF-DGSFHKSLDLGKDLS-AALLGPRSERWSAYVE-DGRIKALNVEEAPS  189 (203)
Q Consensus       113 ~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~-~~~v~~~yGv~~~~~-~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~  189 (203)
                       |++||.|+++.+++|+++++++ .|++++|. +++++++||+..... ..|   ...|++|||| +|+|++.++..+..
T Consensus        79 -vv~vs~D~~~~~~~f~~~~~~~-~~~~lsD~~~~~~~~~~gv~~~~~~~~g---~~~r~tfvId~~G~I~~~~~~~~~~  153 (167)
T PRK00522         79 -VLCISADLPFAQKRFCGAEGLE-NVITLSDFRDHSFGKAYGVAIAEGPLKG---LLARAVFVLDENNKVVYSELVPEIT  153 (167)
T ss_pred             -EEEEeCCCHHHHHHHHHhCCCC-CceEeecCCccHHHHHhCCeecccccCC---ceeeEEEEECCCCeEEEEEECCCcC
Confidence             9999999999999999999986 58999995 669999999976431 122   2579999999 99999999876532


Q ss_pred             CcccCCHHHHHhcC
Q 028808          190 KMKVSGGDVILGQI  203 (203)
Q Consensus       190 ~~~~~~a~~vL~~l  203 (203)
                        ...+.+++|++|
T Consensus       154 --~~~~~~~~l~~l  165 (167)
T PRK00522        154 --NEPDYDAALAAL  165 (167)
T ss_pred             --CCCCHHHHHHHh
Confidence              356888888764

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=99.95  E-value=9.1e-28  Score=185.74  Aligned_cols=140  Identities=20%  Similarity=0.303  Sum_probs=116.5

Q ss_pred             cCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEE
Q 028808           36 AVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVI  115 (203)
Q Consensus        36 ~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi  115 (203)
                      ++|++    ||+|++++.+|         +.++|++ ++||++||+||++.|||+|..| ++.|++++++++  |+. ||
T Consensus         1 ~~G~~----aP~f~l~~~~g---------~~~~l~~-~~gk~vvl~f~~~~~c~~C~~e-~~~l~~~~~~~~--~~~-vi   62 (143)
T cd03014           1 KVGDK----APDFTLVTSDL---------SEVSLAD-FAGKVKVISVFPSIDTPVCATQ-TKRFNKEAAKLD--NTV-VL   62 (143)
T ss_pred             CCCCC----CCCcEEECCCC---------cEEeHHH-hCCCeEEEEEEcCCCCCcCHHH-HHHHHHHHHhcC--CCE-EE
Confidence            36888    69999999876         7899999 5999766655555558999999 999999999983  898 99


Q ss_pred             EEecCCHHHHHHHHHHhCCCCceEEEeeCC-chHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCCccc
Q 028808          116 CVAVNDPYVMNGWAEKLQAKDVIEFYGDFD-GSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSKMKV  193 (203)
Q Consensus       116 ~IS~d~~~~~~~~~~~~~l~~~fpllsD~~-~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~~~~  193 (203)
                      +||.|+++.+++|.+++++. +|++++|++ ++++++||+..+..  |   .+.|++|||| +|+|++.+++.++.  +.
T Consensus        63 ~Is~d~~~~~~~~~~~~~~~-~~~~l~D~~~~~~~~~~gv~~~~~--~---~~~~~~~iid~~G~I~~~~~~~~~~--~~  134 (143)
T cd03014          63 TISADLPFAQKRWCGAEGVD-NVTTLSDFRDHSFGKAYGVLIKDL--G---LLARAVFVIDENGKVIYVELVPEIT--DE  134 (143)
T ss_pred             EEECCCHHHHHHHHHhcCCC-CceEeecCcccHHHHHhCCeeccC--C---ccceEEEEEcCCCeEEEEEECCCcc--cC
Confidence            99999999999999999974 599999996 99999999976432  2   2468999999 99999999987543  35


Q ss_pred             CCHHHHHh
Q 028808          194 SGGDVILG  201 (203)
Q Consensus       194 ~~a~~vL~  201 (203)
                      .+.+++|+
T Consensus       135 ~~~~~~~~  142 (143)
T cd03014         135 PDYEAALA  142 (143)
T ss_pred             CCHHHHhh
Confidence            68888775

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=99.95  E-value=1.1e-27  Score=185.81  Aligned_cols=144  Identities=25%  Similarity=0.444  Sum_probs=122.6

Q ss_pred             ccCCCccccCCCceEEeccccccCCCCCCceeeecccccCC-CeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcE
Q 028808           35 VAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKG-KKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDS  113 (203)
Q Consensus        35 ~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~g-k~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~  113 (203)
                      +++|++    +|+|++.+.+|         +.++|++ ++| |++||+|||++|||.|..+ ++.|++++++|+++|++ 
T Consensus         1 ~~~G~~----~p~~~l~~~~g---------~~v~l~~-~~g~k~~vl~f~~~~~c~~C~~~-~~~l~~~~~~~~~~~v~-   64 (149)
T cd03018           1 LEVGDK----APDFELPDQNG---------QEVRLSE-FRGRKPVVLVFFPLAFTPVCTKE-LCALRDSLELFEAAGAE-   64 (149)
T ss_pred             CCCCCc----CCCcEecCCCC---------CEEeHHH-HcCCCeEEEEEeCCCCCccHHHH-HHHHHHHHHHHHhCCCE-
Confidence            468998    59999999876         8999999 588 8778888889999999998 99999999999999998 


Q ss_pred             EEEEecCCHHHHHHHHHHhCCCCceEEEeeCC--chHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCC
Q 028808          114 VICVAVNDPYVMNGWAEKLQAKDVIEFYGDFD--GSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSK  190 (203)
Q Consensus       114 vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~--~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~  190 (203)
                      +|+||.|+++.+++|+++++++  ||+++|.+  +++++.||+.....  ++   ..|++|||| +|+|++.+.+++...
T Consensus        65 vi~vs~d~~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~~~g~~~~~~--~~---~~~~~~lid~~G~v~~~~~~~~~~~  137 (149)
T cd03018          65 VLGISVDSPFSLRAWAEENGLT--FPLLSDFWPHGEVAKAYGVFDEDL--GV---AERAVFVIDRDGIIRYAWVSDDGEP  137 (149)
T ss_pred             EEEecCCCHHHHHHHHHhcCCC--ceEecCCCchhHHHHHhCCccccC--CC---ccceEEEECCCCEEEEEEecCCccc
Confidence            9999999999999999999996  99999988  99999999975321  22   346899999 999999999987433


Q ss_pred             cccCCHHHHHh
Q 028808          191 MKVSGGDVILG  201 (203)
Q Consensus       191 ~~~~~a~~vL~  201 (203)
                      .+....+++|+
T Consensus       138 ~~~~~~~~~~~  148 (149)
T cd03018         138 RDLPDYDEALD  148 (149)
T ss_pred             ccchhHHHHhh
Confidence            44556666654

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=99.95  E-value=4.9e-27  Score=188.08  Aligned_cols=145  Identities=20%  Similarity=0.357  Sum_probs=118.5

Q ss_pred             CCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEE
Q 028808           37 VGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVIC  116 (203)
Q Consensus        37 ~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~  116 (203)
                      +|++    ||+|++++.+|.     ++++.++|++ ++||++||+||+++|||+|..| ++.|++++++|+++|++ |++
T Consensus         1 vG~~----aP~f~~~~~~g~-----~~~~~~~l~~-~~Gk~vvl~F~~~~~c~~C~~~-l~~l~~~~~~~~~~~v~-vv~   68 (173)
T cd03015           1 VGKK----APDFKATAVVPN-----GEFKEISLSD-YKGKWVVLFFYPLDFTFVCPTE-IIAFSDRYEEFKKLNAE-VLG   68 (173)
T ss_pred             CCCc----CCCCEeecccCC-----CCceEEehHH-hCCCEEEEEEECCCCCCcCHHH-HHHHHHHHHHHHHCCCE-EEE
Confidence            5777    699999987630     1226899999 5999777776679999999999 99999999999999998 999


Q ss_pred             EecCCHHHHHHHHHHh-------CCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCC
Q 028808          117 VAVNDPYVMNGWAEKL-------QAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAP  188 (203)
Q Consensus       117 IS~d~~~~~~~~~~~~-------~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~  188 (203)
                      ||.|+.+.+++|.+..       +++  ||+++|++++++++||+.....  |   ...|++|||| +|+|++++++..+
T Consensus        69 Is~d~~~~~~~~~~~~~~~~~~~~~~--f~~l~D~~~~~~~~~gv~~~~~--~---~~~p~~~lID~~G~I~~~~~~~~~  141 (173)
T cd03015          69 VSTDSHFSHLAWRNTPRKEGGLGKIN--FPLLADPKKKISRDYGVLDEEE--G---VALRGTFIIDPEGIIRHITVNDLP  141 (173)
T ss_pred             EecCCHHHHHHHHHhhhhhCCccCcc--eeEEECCchhHHHHhCCccccC--C---ceeeEEEEECCCCeEEEEEecCCC
Confidence            9999988888898774       465  9999999999999999976421  2   2468899999 9999999998765


Q ss_pred             CCcccCCHHHHHhcC
Q 028808          189 SKMKVSGGDVILGQI  203 (203)
Q Consensus       189 ~~~~~~~a~~vL~~l  203 (203)
                      .+   ++.+++|+.|
T Consensus       142 ~~---~~~~~il~~l  153 (173)
T cd03015         142 VG---RSVDETLRVL  153 (173)
T ss_pred             CC---CCHHHHHHHH
Confidence            32   4566676643

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=99.95  E-value=2.4e-27  Score=183.74  Aligned_cols=142  Identities=25%  Similarity=0.384  Sum_probs=118.6

Q ss_pred             cCCCccccCCCceEEec--cccccCCCCCCceeeecccccCCCeEEEEEeeCC-CCCCCCccchhhHHHhHHHHHHcCCc
Q 028808           36 AVGSDIVSAAQDVSLQK--ARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGA-YTGVCSNQHVPSYKNNIDKFKAKGID  112 (203)
Q Consensus        36 ~~G~~~~~~APdf~l~~--~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~-~cp~C~~ehl~~l~~~~~~f~~~gv~  112 (203)
                      |+|++    +|+|++++  .+|         ++++|++ ++||+ +|++||++ |||+|..| +|.+.+++++++++|++
T Consensus         1 k~G~~----~P~~~~~~~~~~g---------~~~~l~~-~~gk~-~vv~f~~~~~Cp~C~~~-~p~l~~l~~~~~~~~v~   64 (146)
T PF08534_consen    1 KVGDK----APDFSLKDLDLDG---------KPVSLSD-FKGKP-VVVNFWASAWCPPCRKE-LPYLNELQEKYKDKGVD   64 (146)
T ss_dssp             STTSB------CCEEEEEETTS---------EEEEGGG-GTTSE-EEEEEESTTTSHHHHHH-HHHHHHHHHHHHTTTCE
T ss_pred             CCCCC----CCCeEEEeecCCC---------CEecHHH-hCCCe-EEEEEEccCCCCcchhh-hhhHHhhhhhhccCceE
Confidence            57999    59999976  665         9999999 69995 66678888 99999999 99999999999999999


Q ss_pred             EEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCCc
Q 028808          113 SVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSKM  191 (203)
Q Consensus       113 ~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~~  191 (203)
                       +++|+.++...+.+|.++++++  ||++.|++++++++||+...... +.+ ...|++|||| ||+|++++.+..+ + 
T Consensus        65 -~v~v~~~~~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~~~~~~~~~-~~~-~~~P~~~lId~~G~V~~~~~g~~~-~-  137 (146)
T PF08534_consen   65 -VVGVSSDDDPPVREFLKKYGIN--FPVLSDPDGALAKALGVTIMEDP-GNG-FGIPTTFLIDKDGKVVYRHVGPDP-D-  137 (146)
T ss_dssp             -EEEEEESSSHHHHHHHHHTTTT--SEEEEETTSHHHHHTTCEEECCT-TTT-SSSSEEEEEETTSBEEEEEESSBT-T-
T ss_pred             -EEEecccCCHHHHHHHHhhCCC--ceEEechHHHHHHHhCCcccccc-ccC-CeecEEEEEECCCEEEEEEeCCCC-C-
Confidence             9999998766699999999986  99999999999999998643211 111 2468899999 9999999999876 3 


Q ss_pred             ccCCHHHHH
Q 028808          192 KVSGGDVIL  200 (203)
Q Consensus       192 ~~~~a~~vL  200 (203)
                      +.+++++||
T Consensus       138 ~~~~~~~~l  146 (146)
T PF08534_consen  138 EESDLEAVL  146 (146)
T ss_dssp             SHHSHHHHH
T ss_pred             CCCChhhcC
Confidence            678999887

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=99.95  E-value=2.9e-27  Score=193.89  Aligned_cols=148  Identities=17%  Similarity=0.318  Sum_probs=119.8

Q ss_pred             ccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCc
Q 028808           33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID  112 (203)
Q Consensus        33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~  112 (203)
                      ..+.+|++    ||+|++.+...     ++.+++++|++ ++||++||+|||++|||+|..| +++|++++++|+++|++
T Consensus         4 ~~~~~G~~----aPdF~~~~~~~-----~~~~~~v~l~d-~~Gk~~lL~F~p~~~~~~C~~e-~~~l~~~~~~f~~~g~~   72 (199)
T PTZ00253          4 GDAKINHP----APSFEEVALMP-----NGSFKKISLSS-YKGKWVVLFFYPLDFTFVCPTE-IIQFSDSVKRFNELNCE   72 (199)
T ss_pred             cccccCCc----CCCCEeecccc-----CCCCcEEeHHH-HCCCEEEEEEEcCCCCCcCHHH-HHHHHHHHHHHHHcCCE
Confidence            34678999    69999876410     01127899999 5999999988889999999999 99999999999999999


Q ss_pred             EEEEEecCCHHHHHHHHHHh-------CCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEe
Q 028808          113 SVICVAVNDPYVMNGWAEKL-------QAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNV  184 (203)
Q Consensus       113 ~vi~IS~d~~~~~~~~~~~~-------~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~  184 (203)
                       ||+||+|+.+.+.+|..+.       ++  +||+++|+++++++.||+.....  |   ...|++|||| +|+|++.++
T Consensus        73 -vv~IS~d~~~~~~~~~~~~~~~~~~~~~--~fpll~D~~~~ia~~ygv~~~~~--g---~~~r~~fiID~~G~i~~~~~  144 (199)
T PTZ00253         73 -VLACSMDSEYAHLQWTLQERKKGGLGTM--AIPMLADKTKSIARSYGVLEEEQ--G---VAYRGLFIIDPKGMLRQITV  144 (199)
T ss_pred             -EEEEeCCCHHHHHHHHhChHhhCCcccc--ccceEECcHhHHHHHcCCcccCC--C---ceEEEEEEECCCCEEEEEEe
Confidence             9999999999899986432       25  49999999999999999975422  2   2469999999 999999999


Q ss_pred             ecCCCCcccCCHHHHHhc
Q 028808          185 EEAPSKMKVSGGDVILGQ  202 (203)
Q Consensus       185 ~~~~~~~~~~~a~~vL~~  202 (203)
                      ++.+.+   .+.+++|+.
T Consensus       145 ~~~~~~---r~~~e~l~~  159 (199)
T PTZ00253        145 NDMPVG---RNVEEVLRL  159 (199)
T ss_pred             cCCCCC---CCHHHHHHH
Confidence            876543   355555554

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=99.95  E-value=7.4e-27  Score=183.07  Aligned_cols=149  Identities=22%  Similarity=0.335  Sum_probs=121.0

Q ss_pred             ccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCc
Q 028808           33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID  112 (203)
Q Consensus        33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~  112 (203)
                      ..+++|++    +|+|++++.+|         +.++|++ ++||++||+|+++.|||+|..+ ++.|++++++|+++|++
T Consensus         2 ~~~~~g~~----~p~f~l~~~~G---------~~~~l~~-~~gk~~ll~f~~~~~~p~C~~~-~~~l~~~~~~~~~~~v~   66 (154)
T PRK09437          2 NPLKAGDI----APKFSLPDQDG---------EQVSLTD-FQGQRVLVYFYPKAMTPGCTVQ-ACGLRDNMDELKKAGVV   66 (154)
T ss_pred             CcCCCCCc----CCCcEeeCCCC---------CEEeHHH-hCCCCEEEEEECCCCCCchHHH-HHHHHHHHHHHHHCCCE
Confidence            46788999    69999999886         7899999 5998655544445689999999 99999999999999998


Q ss_pred             EEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCC-CCcceEEEEEe-CCEEEEEEeecCCCC
Q 028808          113 SVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLG-PRSERWSAYVE-DGRIKALNVEEAPSK  190 (203)
Q Consensus       113 ~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~-~~~~r~tfIId-dG~I~~~~~~~~~~~  190 (203)
                       +|+||.|+++.+++|+++++++  ||+++|+++.++++||+.......+.+ ....|++|||| +|+|++++.+..+. 
T Consensus        67 -vi~Is~d~~~~~~~~~~~~~~~--~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~-  142 (154)
T PRK09437         67 -VLGISTDKPEKLSRFAEKELLN--FTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTS-  142 (154)
T ss_pred             -EEEEcCCCHHHHHHHHHHhCCC--CeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcCCCcc-
Confidence             9999999999999999999996  999999999999999997643211111 11357899999 99999999876543 


Q ss_pred             cccCCHHHHHhcC
Q 028808          191 MKVSGGDVILGQI  203 (203)
Q Consensus       191 ~~~~~a~~vL~~l  203 (203)
                         ++-+++|+++
T Consensus       143 ---~~~~~~~~~~  152 (154)
T PRK09437        143 ---NHHDVVLDYL  152 (154)
T ss_pred             ---hhHHHHHHHH
Confidence               4567777653

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.95  E-value=3.3e-27  Score=182.33  Aligned_cols=128  Identities=18%  Similarity=0.222  Sum_probs=110.2

Q ss_pred             CCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHH
Q 028808           45 AQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYV  124 (203)
Q Consensus        45 APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~  124 (203)
                      +|+|++++.+|         +.++++++.+++++||+|||++|||+|..| ++.|++++++|+++|+. ||+||.|+.+.
T Consensus         2 ~p~f~l~~~~g---------~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~-~~~l~~~~~~~~~~~v~-vv~V~~~~~~~   70 (149)
T cd02970           2 APDFELPDAGG---------ETVTLSALLGEGPVVVVFYRGFGCPFCREY-LRALSKLLPELDALGVE-LVAVGPESPEK   70 (149)
T ss_pred             CCCccccCCCC---------CEEchHHHhcCCCEEEEEECCCCChhHHHH-HHHHHHHHHHHHhcCeE-EEEEeCCCHHH
Confidence            79999999876         889999964567899999999999999999 99999999999999998 99999999988


Q ss_pred             HHHHHHHhCCCCceEEEeeCCchHHHHcCCcccccc------------------ccCCCCcceEEEEEe-CCEEEEEEee
Q 028808          125 MNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSA------------------ALLGPRSERWSAYVE-DGRIKALNVE  185 (203)
Q Consensus       125 ~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~------------------~g~~~~~~r~tfIId-dG~I~~~~~~  185 (203)
                      +.+|.++++++  ||+++|+++++.++||+......                  .+......|++|||| +|+|+|.|++
T Consensus        71 ~~~~~~~~~~~--~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~  148 (149)
T cd02970          71 LEAFDKGKFLP--FPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD  148 (149)
T ss_pred             HHHHHHhcCCC--CeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence            88999999996  99999999999999999642210                  000112578999999 9999999975

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=99.94  E-value=2.3e-26  Score=176.57  Aligned_cols=137  Identities=24%  Similarity=0.331  Sum_probs=116.3

Q ss_pred             CCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHH
Q 028808           45 AQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYV  124 (203)
Q Consensus        45 APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~  124 (203)
                      +|+|++++.+|         +.++|++ ++||++||+||+++|||+|..+ ++.|++++++|+++|++ ||+||.|+++.
T Consensus         3 ~p~f~l~~~~g---------~~~~l~~-~~gk~~ll~f~~~~~cp~C~~~-~~~l~~~~~~~~~~~~~-vv~is~d~~~~   70 (140)
T cd03017           3 APDFTLPDQDG---------ETVSLSD-LRGKPVVLYFYPKDDTPGCTKE-ACDFRDLYEEFKALGAV-VIGVSPDSVES   70 (140)
T ss_pred             CCCccccCCCC---------CEEeHHH-hCCCcEEEEEeCCCCCCchHHH-HHHHHHHHHHHHHCCCE-EEEEcCCCHHH
Confidence            79999999876         8999999 5898666655558999999998 99999999999999998 99999999999


Q ss_pred             HHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCCcccCCHHHHHh
Q 028808          125 MNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSKMKVSGGDVILG  201 (203)
Q Consensus       125 ~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~~~~~~a~~vL~  201 (203)
                      +++|+++++++  ||+++|++++++++||+...... + .....|++|||| +|+|++++.+..+    ..+.+++|+
T Consensus        71 ~~~~~~~~~~~--~~~l~D~~~~~~~~~gv~~~~~~-~-~~~~~p~~~lid~~G~v~~~~~g~~~----~~~~~~~~~  140 (140)
T cd03017          71 HAKFAEKYGLP--FPLLSDPDGKLAKAYGVWGEKKK-K-YMGIERSTFLIDPDGKIVKVWRKVKP----KGHAEEVLE  140 (140)
T ss_pred             HHHHHHHhCCC--ceEEECCccHHHHHhCCcccccc-c-cCCcceeEEEECCCCEEEEEEecCCc----cchHHHHhC
Confidence            99999999996  99999999999999999764221 1 112468899999 9999999987654    367777764

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=99.94  E-value=1.4e-26  Score=173.94  Aligned_cols=123  Identities=27%  Similarity=0.487  Sum_probs=108.8

Q ss_pred             CCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEE
Q 028808           37 VGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVIC  116 (203)
Q Consensus        37 ~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~  116 (203)
                      +|++    +|+|++++.+|         +.++|+++ +||++||+||+.+|||.|..+ +++|++++++|+++|++ +++
T Consensus         1 vG~~----~P~f~l~~~~g---------~~~~l~~l-~gk~~vl~f~~~~~c~~c~~~-l~~l~~~~~~~~~~~~~-vi~   64 (124)
T PF00578_consen    1 VGDK----APDFTLTDSDG---------KTVSLSDL-KGKPVVLFFWPTAWCPFCQAE-LPELNELYKKYKDKGVQ-VIG   64 (124)
T ss_dssp             TTSB----GGCEEEETTTS---------EEEEGGGG-TTSEEEEEEESTTTSHHHHHH-HHHHHHHHHHHHTTTEE-EEE
T ss_pred             CcCC----CCCcEeECCCC---------CEEEHHHH-CCCcEEEEEeCccCccccccc-hhHHHHHhhhhccceEE-eee
Confidence            5888    59999999876         89999995 999777766666699999999 99999999999999998 999


Q ss_pred             EecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEE
Q 028808          117 VAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKAL  182 (203)
Q Consensus       117 IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~  182 (203)
                      ||.|+++.+++|.++++++  ||+++|++++++++||+.....     ....|++|||| +|+|+|+
T Consensus        65 is~d~~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~~~~~~~~-----~~~~p~~~lid~~g~I~~~  124 (124)
T PF00578_consen   65 ISTDDPEEIKQFLEEYGLP--FPVLSDPDGELAKAFGIEDEKD-----TLALPAVFLIDPDGKIRYA  124 (124)
T ss_dssp             EESSSHHHHHHHHHHHTCS--SEEEEETTSHHHHHTTCEETTT-----SEESEEEEEEETTSBEEEE
T ss_pred             cccccccchhhhhhhhccc--cccccCcchHHHHHcCCccccC-----CceEeEEEEECCCCEEEeC
Confidence            9999999999999999986  9999999999999999975321     12468999999 9999985

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=99.94  E-value=4.7e-26  Score=174.57  Aligned_cols=136  Identities=29%  Similarity=0.514  Sum_probs=116.2

Q ss_pred             CCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHH
Q 028808           45 AQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYV  124 (203)
Q Consensus        45 APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~  124 (203)
                      +|+|++.+.+|         ++++|+++ +||++||+|+++.|||+|..+ ++.|++++++|++.|++ +|+||.|++..
T Consensus         2 ~p~f~l~~~~g---------~~~~l~~~-~gk~~ll~f~~~~~c~~C~~~-~~~l~~~~~~~~~~~~~-~i~is~d~~~~   69 (140)
T cd02971           2 APDFTLPATDG---------GEVSLSDF-KGKWVVLFFYPKDFTPVCTTE-LCAFRDLAEEFAKGGAE-VLGVSVDSPFS   69 (140)
T ss_pred             CCCceeccCCC---------cEEehHHh-CCCeEEEEEeCCCCCCcCHHH-HHHHHHHHHHHHHCCCE-EEEEeCCCHHH
Confidence            69999999876         89999995 898777766669999999999 99999999999989998 99999999999


Q ss_pred             HHHHHHHh-CCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCCcccCCHHHH
Q 028808          125 MNGWAEKL-QAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSKMKVSGGDVI  199 (203)
Q Consensus       125 ~~~~~~~~-~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~~~~~~a~~v  199 (203)
                      +++|++++ +.+  |++++|+++.++++||+...... + +....|++|||| +|+|++++.+.++.   .+..+.+
T Consensus        70 ~~~~~~~~~~~~--~~~l~D~~~~~~~~~g~~~~~~~-~-~~~~~p~~~lid~~g~i~~~~~~~~~~---~~~~~~~  139 (140)
T cd02971          70 HKAWAEKEGGLN--FPLLSDPDGEFAKAYGVLIEKSA-G-GGLAARATFIIDPDGKIRYVEVEPLPT---GRNAEEL  139 (140)
T ss_pred             HHHHHhcccCCC--ceEEECCChHHHHHcCCcccccc-c-cCceeEEEEEECCCCcEEEEEecCCCC---CcChHhh
Confidence            99999999 775  99999999999999999864321 1 123578999999 99999999998763   4555554

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=5.5e-25  Score=173.17  Aligned_cols=148  Identities=24%  Similarity=0.323  Sum_probs=122.2

Q ss_pred             ccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCc
Q 028808           33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID  112 (203)
Q Consensus        33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~  112 (203)
                      ..+++||.+    |||+|+|.+|         +.++|.++-.+|+||+++||++-+|.|++| .+.|++.|++|++.|.+
T Consensus        61 ~~v~~Gd~i----PD~tL~dedg---------~sisLkkit~nk~vV~f~YP~asTPGCTkQ-aCgFRDnY~k~kka~ae  126 (211)
T KOG0855|consen   61 LKVNKGDAI----PDFTLKDEDG---------KSISLKKITGNKPVVLFFYPAASTPGCTKQ-ACGFRDNYEKFKKAGAE  126 (211)
T ss_pred             eeeecCCcC----CCcccccCCC---------CeeeeeeecCCCcEEEEEeccCCCCCcccc-cccccccHHHHhhcCce
Confidence            368999995    9999999886         899999964445899999999999999999 89999999999999998


Q ss_pred             EEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEeCC-EEEEEEeecCCCCc
Q 028808          113 SVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDG-RIKALNVEEAPSKM  191 (203)
Q Consensus       113 ~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIIddG-~I~~~~~~~~~~~~  191 (203)
                       |+|+|.|+..++++|+.+++++  |.+|||+.+++.+.+|+..++-    |....|.+||.|+| ..+.+.......+.
T Consensus       127 -V~GlS~D~s~sqKaF~sKqnlP--YhLLSDpk~e~ik~lGa~k~p~----gg~~~Rsh~if~kg~~k~~ik~~~isPev  199 (211)
T KOG0855|consen  127 -VIGLSGDDSASQKAFASKQNLP--YHLLSDPKNEVIKDLGAPKDPF----GGLPGRSHYIFDKGGVKQLIKNNQISPEV  199 (211)
T ss_pred             -EEeeccCchHHHHHhhhhccCC--eeeecCcchhHHHHhCCCCCCC----CCcccceEEEEecCCeEEEEEecccCccc
Confidence             9999999999999999999998  9999999999999999987531    22357999999944 43333333333345


Q ss_pred             ccCCHHHHHh
Q 028808          192 KVSGGDVILG  201 (203)
Q Consensus       192 ~~~~a~~vL~  201 (203)
                      ++.+|.++|.
T Consensus       200 svd~a~k~~~  209 (211)
T KOG0855|consen  200 SVDEALKFLK  209 (211)
T ss_pred             cHHHHHHHHh
Confidence            6666666654

>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.4e-24  Score=171.89  Aligned_cols=150  Identities=17%  Similarity=0.284  Sum_probs=126.5

Q ss_pred             ccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEE
Q 028808           35 VAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSV  114 (203)
Q Consensus        35 ~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~v  114 (203)
                      +.+.++    ||+|+-+..-      ++.++.++|++| +||+||++|||.+|+.+|..| +-.|.+.+++|++.|++ |
T Consensus         4 ~~~~~p----~p~fk~~aVV------dG~f~e~~L~dy-~gkyvvlfFyplDftfVcPte-IiafSd~~~eF~~~n~e-V   70 (196)
T KOG0852|consen    4 EVVFKP----APDFKGTAVV------DGEFKEIKLSDY-KGKYVVLFFYPLDFTFVCPTE-IIAFSDRAPEFRKLNTE-V   70 (196)
T ss_pred             cccCCC----CCCcceeEEE------cCcceEEeehhh-cccEEEEEecCCceeeECchh-hhhhhhhHHHHHhcCCe-E
Confidence            444555    7999987753      457899999995 999999999999999999999 99999999999999999 9


Q ss_pred             EEEecCCHHHHHHHHH----HhCCC-CceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCC
Q 028808          115 ICVAVNDPYVMNGWAE----KLQAK-DVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAP  188 (203)
Q Consensus       115 i~IS~d~~~~~~~~~~----~~~l~-~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~  188 (203)
                      +++|+|+.+.|.+|+.    +-|+. .++|+++|.+.++++.||++.++.  |.   +.|..|||| +|.++++.+++-+
T Consensus        71 ig~S~DS~fshlAW~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~--G~---~lRglfIId~~gi~R~it~NDlp  145 (196)
T KOG0852|consen   71 LGISTDSVFSHLAWINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDE--GI---ALRGLFIIDPDGILRQITINDLP  145 (196)
T ss_pred             EEEeccchhhhhhHhcCchhhCCcCccccceeeccchhhHHhcCceecCC--Cc---ceeeeEEEccccceEEeeecccC
Confidence            9999999999999964    33442 369999999999999999998654  32   679999999 9999999999988


Q ss_pred             CCcccCCHHHHHhc
Q 028808          189 SKMKVSGGDVILGQ  202 (203)
Q Consensus       189 ~~~~~~~a~~vL~~  202 (203)
                      .+.+++.+-+++++
T Consensus       146 vgRSVdE~lRLvqA  159 (196)
T KOG0852|consen  146 VGRSVDETLRLVQA  159 (196)
T ss_pred             CCccHHHHHHHHHH
Confidence            77566666655543

>PLN02412 probable glutathione peroxidase

Probab=99.92  E-value=9.5e-25  Score=174.45  Aligned_cols=127  Identities=12%  Similarity=0.180  Sum_probs=101.3

Q ss_pred             CCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC----
Q 028808           45 AQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN----  120 (203)
Q Consensus        45 APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d----  120 (203)
                      +|+|++++.+|         +.++|++ ++|| +||++||++|||+|..| +|.|++++++|+++|+. |++||.|    
T Consensus         9 ~pdf~l~d~~G---------~~v~l~~-~~gk-~vlv~f~a~~C~~c~~e-~~~l~~l~~~~~~~g~~-vvgv~~~~~~~   75 (167)
T PLN02412          9 IYDFTVKDIGG---------NDVSLNQ-YKGK-VLLIVNVASKCGLTDSN-YKELNVLYEKYKEQGFE-ILAFPCNQFLG   75 (167)
T ss_pred             CCceEEECCCC---------CEEeHHH-hCCC-EEEEEEeCCCCCChHHH-HHHHHHHHHHHhhCCcE-EEEeccccccc
Confidence            79999999886         8999999 5997 78889999999999999 99999999999999998 9999974    


Q ss_pred             ----CHHH-HHHHHHHhCCCCceEEEee--CCc-hHHHHcCCcccccc--ccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808          121 ----DPYV-MNGWAEKLQAKDVIEFYGD--FDG-SFHKSLDLGKDLSA--ALLGPRSERWSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       121 ----~~~~-~~~~~~~~~l~~~fpllsD--~~~-~v~~~yGv~~~~~~--~g~~~~~~r~tfIId-dG~I~~~~~~~  186 (203)
                          +... ++.|+++++++  ||+++|  .++ ..++.|+.......  .+.+....|++|||| +|+|++++.+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~--fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~  150 (167)
T PLN02412         76 QEPGSNEEIQQTVCTRFKAE--FPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPT  150 (167)
T ss_pred             CCCCCHHHHHHHHHHccCCC--CceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCC
Confidence                3433 45567999996  999984  564 77888875432110  011123468999999 99999999865

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=99.91  E-value=1.5e-24  Score=170.21  Aligned_cols=126  Identities=16%  Similarity=0.226  Sum_probs=99.6

Q ss_pred             CCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC----
Q 028808           45 AQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN----  120 (203)
Q Consensus        45 APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d----  120 (203)
                      +|+|++++.+|         ++++|++ ++|| +||++||++||| |..| +|.|++++++|+++|+. |++||.|    
T Consensus         2 ~~~f~l~d~~G---------~~v~l~~-~~Gk-~vvl~fwatwC~-C~~e-~p~l~~l~~~~~~~~~~-vv~v~~~~~~~   67 (152)
T cd00340           2 IYDFSVKDIDG---------EPVSLSK-YKGK-VLLIVNVASKCG-FTPQ-YEGLEALYEKYKDRGLV-VLGFPCNQFGG   67 (152)
T ss_pred             cceeEEECCCC---------CEEeHHH-hCCC-EEEEEEEcCCCC-chHH-HHHHHHHHHHhcCCCEE-EEEeccCcccc
Confidence            59999999886         8999999 5998 677889999999 9999 99999999999999998 9999864    


Q ss_pred             ----CHHHHHHHHHH-hCCCCceEEEeeC--Cch-HHHHcCCccccccc--cCCCCcceEEEEEe-CCEEEEEEeec
Q 028808          121 ----DPYVMNGWAEK-LQAKDVIEFYGDF--DGS-FHKSLDLGKDLSAA--LLGPRSERWSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       121 ----~~~~~~~~~~~-~~l~~~fpllsD~--~~~-v~~~yGv~~~~~~~--g~~~~~~r~tfIId-dG~I~~~~~~~  186 (203)
                          +++.+++|+++ ++++  ||+++|.  ++. ..+.|+......+.  +-..+..|++|||| +|+|++++.+.
T Consensus        68 ~~~~~~~~~~~f~~~~~~~~--fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~  142 (152)
T cd00340          68 QEPGSNEEIKEFCETNYGVT--FPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPT  142 (152)
T ss_pred             CCCCCHHHHHHHHHHhcCCC--ceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCC
Confidence                46789999997 7996  9999874  444 56667642211000  00112356899999 99999999875

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>PTZ00256 glutathione peroxidase; Provisional

Probab=99.91  E-value=2e-24  Score=174.88  Aligned_cols=129  Identities=13%  Similarity=0.216  Sum_probs=97.3

Q ss_pred             CCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC----
Q 028808           45 AQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN----  120 (203)
Q Consensus        45 APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d----  120 (203)
                      +|+|++++.+|         +.++|++ ++||++||+++|++|||+|..| +|.|++++++|+++|+. |++||+|    
T Consensus        20 ~p~f~l~d~~G---------~~vsLs~-~~Gk~vvlv~n~atwCp~C~~e-~p~l~~l~~~~~~~gv~-vv~vs~~~~~~   87 (183)
T PTZ00256         20 FFEFEAIDIDG---------QLVQLSK-FKGKKAIIVVNVACKCGLTSDH-YTQLVELYKQYKSQGLE-ILAFPCNQFME   87 (183)
T ss_pred             ccceEeEcCCC---------CEEeHHH-hCCCcEEEEEEECCCCCchHHH-HHHHHHHHHHHhhCCcE-EEEEecccccc
Confidence            69999999886         8999999 5999777777799999999999 99999999999999998 9999975    


Q ss_pred             ----CHHHHHHHH-HHhCCCCceEEEee--CCchH-HHHcCCcccccc------ccC-CCCcceEEEEEe-CCEEEEEEe
Q 028808          121 ----DPYVMNGWA-EKLQAKDVIEFYGD--FDGSF-HKSLDLGKDLSA------ALL-GPRSERWSAYVE-DGRIKALNV  184 (203)
Q Consensus       121 ----~~~~~~~~~-~~~~l~~~fpllsD--~~~~v-~~~yGv~~~~~~------~g~-~~~~~r~tfIId-dG~I~~~~~  184 (203)
                          +.+..++|. ++++++  ||+++|  .++.. .+.|+...+...      .+. +.-..|++|||| +|+|+++++
T Consensus        88 ~~~~~~~~~~~f~~~~~~~~--fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~  165 (183)
T PTZ00256         88 QEPWDEPEIKEYVQKKFNVD--FPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFS  165 (183)
T ss_pred             cCCCCHHHHHHHHHHhcCCC--CCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEEC
Confidence                345677786 478996  999976  55543 344432211100      001 111134689999 999999998


Q ss_pred             ecC
Q 028808          185 EEA  187 (203)
Q Consensus       185 ~~~  187 (203)
                      +..
T Consensus       166 g~~  168 (183)
T PTZ00256        166 PKV  168 (183)
T ss_pred             CCC
Confidence            753

>PTZ00056 glutathione peroxidase; Provisional

Probab=99.91  E-value=1.1e-23  Score=172.98  Aligned_cols=131  Identities=14%  Similarity=0.218  Sum_probs=102.4

Q ss_pred             ccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCc
Q 028808           33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID  112 (203)
Q Consensus        33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~  112 (203)
                      ..-..|+.    +|+|++++.+|         +.++|++ ++|| +||++||++|||+|..| +|.|++++++|+++|++
T Consensus        11 ~~~~~~~~----~pdf~l~d~~G---------~~vsL~~-~kGk-vvlv~fwAswC~~C~~e-~p~L~~l~~~~~~~g~~   74 (199)
T PTZ00056         11 SKDELRKS----IYDYTVKTLEG---------TTVPMSS-LKNK-VLMITNSASKCGLTKKH-VDQMNRLHSVFNPLGLE   74 (199)
T ss_pred             cchhcCCC----CCceEEECCCC---------CEEeHHH-hCCC-EEEEEEECCCCCChHHH-HHHHHHHHHHHhcCceE
Confidence            34456677    69999999886         8999999 5998 78889999999999999 99999999999999998


Q ss_pred             EEEEEec--------CCHHHHHHHHHHhCCCCceEEEeeC------CchHH--------HHcCCccccccccCCCCcceE
Q 028808          113 SVICVAV--------NDPYVMNGWAEKLQAKDVIEFYGDF------DGSFH--------KSLDLGKDLSAALLGPRSERW  170 (203)
Q Consensus       113 ~vi~IS~--------d~~~~~~~~~~~~~l~~~fpllsD~------~~~v~--------~~yGv~~~~~~~g~~~~~~r~  170 (203)
                       ||+||+        ++++.+++|+++++++  ||+++|.      ...+.        +.|+.....  .++  ...++
T Consensus        75 -vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~--fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~--~~i--~~~~~  147 (199)
T PTZ00056         75 -ILAFPTSQFLNQEFPNTKDIRKFNDKNKIK--YNFFEPIEVNGENTHELFKFLKANCDSMHDENGTL--KAI--GWNFG  147 (199)
T ss_pred             -EEEecchhccCCCCCCHHHHHHHHHHcCCC--ceeeeeeeccCCccCHHHHHHHHhCcccccccccC--Ccc--CCCCE
Confidence             999996        5678899999999996  9999873      22222        223332110  011  12357


Q ss_pred             EEEEe-CCEEEEEEeec
Q 028808          171 SAYVE-DGRIKALNVEE  186 (203)
Q Consensus       171 tfIId-dG~I~~~~~~~  186 (203)
                      +|||| +|+|++.+.+.
T Consensus       148 tflID~~G~iv~~~~g~  164 (199)
T PTZ00056        148 KFLVNKSGNVVAYFSPR  164 (199)
T ss_pred             EEEECCCCcEEEEeCCC
Confidence            99999 99999998764

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=99.90  E-value=1.1e-23  Score=165.33  Aligned_cols=122  Identities=11%  Similarity=0.218  Sum_probs=96.5

Q ss_pred             CceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEec------
Q 028808           46 QDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAV------  119 (203)
Q Consensus        46 Pdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~------  119 (203)
                      =+|++++.+|         ++++|++ ++|| +||++||++|||+|..| +|.+++++++|+++|+. |++|++      
T Consensus         3 ~~f~l~~~~G---------~~~~l~~-~~Gk-~vvv~~~as~C~~c~~~-~~~l~~l~~~~~~~~~~-v~~i~~~~~~~~   69 (153)
T TIGR02540         3 YSFEVKDARG---------RTVSLEK-YRGK-VSLVVNVASECGFTDQN-YRALQELHRELGPSHFN-VLAFPCNQFGES   69 (153)
T ss_pred             ccceeECCCC---------CEecHHH-hCCC-EEEEEEeCCCCCchhhh-HHHHHHHHHHHhhCCeE-EEEEeccccccC
Confidence            4799999886         8999999 5998 56778999999999999 99999999999999998 999995      


Q ss_pred             --CCHHHHHHHHHH-hCCCCceEEEeeC---CchH--HHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808          120 --NDPYVMNGWAEK-LQAKDVIEFYGDF---DGSF--HKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       120 --d~~~~~~~~~~~-~~l~~~fpllsD~---~~~v--~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~  186 (203)
                        |+++.+++|+++ ++++  ||+++|.   +...  +..|++...   .+.+ ...|++|||| +|+|++++.+.
T Consensus        70 ~~d~~~~~~~f~~~~~~~~--fp~~~d~~~~~~~~~~~~~~~~~~~---~~~p-~~~~~tflID~~G~v~~~~~g~  139 (153)
T TIGR02540        70 EPDSSKEIESFARRNYGVT--FPMFSKIKILGSEAEPAFRFLVDSS---KKEP-RWNFWKYLVNPEGQVVKFWRPE  139 (153)
T ss_pred             CCCCHHHHHHHHHHhcCCC--CCccceEecCCCCCCcHHHHHHhcC---CCCC-CCccEEEEEcCCCcEEEEECCC
Confidence              567889999986 8996  9999883   2333  333433211   0111 2256799999 99999999765

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=99.89  E-value=2.8e-23  Score=174.50  Aligned_cols=133  Identities=15%  Similarity=0.239  Sum_probs=104.0

Q ss_pred             ccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEE
Q 028808           35 VAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSV  114 (203)
Q Consensus        35 ~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~v  114 (203)
                      ...|+.    +|+|++++.+|         +.++|++ ++|| +||++||++|||+|..| +|+|++++++|+++|++ |
T Consensus        73 ~~~g~~----aPdF~l~d~~G---------~~vsLsd-~kGK-~vvl~FwAswCp~c~~e-~p~L~~L~~~~~~~Gv~-V  135 (236)
T PLN02399         73 AATEKS----VHDFTVKDIDG---------KDVALSK-FKGK-VLLIVNVASKCGLTSSN-YSELSHLYEKYKTQGFE-I  135 (236)
T ss_pred             hhcCCC----CCceEEECCCC---------CEEeHHH-hCCC-eEEEEEEcCCCcchHHH-HHHHHHHHHHHhcCCcE-E
Confidence            457888    69999999986         8999999 5997 78889999999999999 99999999999999998 9


Q ss_pred             EEEecC--------CHHHHHHHH-HHhCCCCceEEEee--CCc-hHHHHcCCcccccc--ccCCCCcceEEEEEe-CCEE
Q 028808          115 ICVAVN--------DPYVMNGWA-EKLQAKDVIEFYGD--FDG-SFHKSLDLGKDLSA--ALLGPRSERWSAYVE-DGRI  179 (203)
Q Consensus       115 i~IS~d--------~~~~~~~~~-~~~~l~~~fpllsD--~~~-~v~~~yGv~~~~~~--~g~~~~~~r~tfIId-dG~I  179 (203)
                      |+|+.|        +...+++|+ ++++++  ||++.|  .++ ..+..|+.......  .|...+..|++|||| +|+|
T Consensus       136 IgV~~d~~~~~e~~s~~ei~~f~~~~~g~~--fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkV  213 (236)
T PLN02399        136 LAFPCNQFGGQEPGSNPEIKQFACTRFKAE--FPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKV  213 (236)
T ss_pred             EEEecccccccCCCCHHHHHHHHHHhcCCC--CccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcE
Confidence            999964        456788997 688996  999964  445 45566654311000  010113357899999 9999


Q ss_pred             EEEEeec
Q 028808          180 KALNVEE  186 (203)
Q Consensus       180 ~~~~~~~  186 (203)
                      ++++.+.
T Consensus       214 v~~~~G~  220 (236)
T PLN02399        214 VERYPPT  220 (236)
T ss_pred             EEEECCC
Confidence            9999864

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=99.89  E-value=2.8e-23  Score=157.91  Aligned_cols=105  Identities=16%  Similarity=0.184  Sum_probs=94.3

Q ss_pred             eeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEec------CCHHHHHHHHHHhCCCCce
Q 028808           65 ATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAV------NDPYVMNGWAEKLQAKDVI  138 (203)
Q Consensus        65 ~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~------d~~~~~~~~~~~~~l~~~f  138 (203)
                      ++++|+++ +|| ++|++||++|||+|..+ +|.|++++++|+++|+. ||+|+.      ++++.+++|+++++++  |
T Consensus        14 ~~v~l~~~-~gk-~vvl~F~a~~C~~C~~~-~p~l~~l~~~~~~~~~~-vi~i~~~~~~~~~~~~~~~~~~~~~~~~--~   87 (126)
T cd03012          14 KPLSLAQL-RGK-VVLLDFWTYCCINCLHT-LPYLTDLEQKYKDDGLV-VIGVHSPEFAFERDLANVKSAVLRYGIT--Y   87 (126)
T ss_pred             CccCHHHh-CCC-EEEEEEECCCCccHHHH-HHHHHHHHHHcCcCCeE-EEEeccCccccccCHHHHHHHHHHcCCC--C
Confidence            68999995 997 67778899999999999 99999999999999998 999986      3577899999999997  9


Q ss_pred             EEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808          139 EFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       139 pllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~  186 (203)
                      |+++|++++++++||+..           .|++|||| +|+|+++++++
T Consensus        88 p~~~D~~~~~~~~~~v~~-----------~P~~~vid~~G~v~~~~~G~  125 (126)
T cd03012          88 PVANDNDYATWRAYGNQY-----------WPALYLIDPTGNVRHVHFGE  125 (126)
T ss_pred             CEEECCchHHHHHhCCCc-----------CCeEEEECCCCcEEEEEecC
Confidence            999999999999999842           47899999 99999999874

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=99.89  E-value=3.9e-23  Score=167.51  Aligned_cols=124  Identities=17%  Similarity=0.232  Sum_probs=101.9

Q ss_pred             ccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCc
Q 028808           33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID  112 (203)
Q Consensus        33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~  112 (203)
                      ....+|++    +|+|++++.+|  .|     +.+++.++.+|| ++|++||++|||+|..| +|.++++    +++|++
T Consensus        37 ~~~~~g~~----~p~f~l~~~~g--~g-----~~~~~~~~~~gk-~vvv~FwatwC~~C~~e-~p~l~~l----~~~~~~   99 (185)
T PRK15412         37 ESALIGKP----VPKFRLESLEN--PG-----QFYQADVLTQGK-PVLLNVWATWCPTCRAE-HQYLNQL----SAQGIR   99 (185)
T ss_pred             chhhcCCC----CCCcCCccCCC--CC-----ccccHHHhcCCC-EEEEEEECCCCHHHHHH-HHHHHHH----HHcCCE
Confidence            35678998    59999999874  12     567777644787 67888999999999999 9999775    456898


Q ss_pred             EEEEEecC-CHHHHHHHHHHhCCCCceE-EEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecC
Q 028808          113 SVICVAVN-DPYVMNGWAEKLQAKDVIE-FYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEA  187 (203)
Q Consensus       113 ~vi~IS~d-~~~~~~~~~~~~~l~~~fp-llsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~  187 (203)
                       |++|+.+ +.+.+++|.++++++  || ++.|+++.++++||+..           .|++|||| +|+|++.+.++.
T Consensus       100 -vi~v~~~~~~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~gv~~-----------~P~t~vid~~G~i~~~~~G~~  163 (185)
T PRK15412        100 -VVGMNYKDDRQKAISWLKELGNP--YALSLFDGDGMLGLDLGVYG-----------APETFLIDGNGIIRYRHAGDL  163 (185)
T ss_pred             -EEEEECCCCHHHHHHHHHHcCCC--CceEEEcCCccHHHhcCCCc-----------CCeEEEECCCceEEEEEecCC
Confidence             9999975 467789999999997  88 58899999999999853           47899999 999999999864

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.88  E-value=4.2e-22  Score=158.87  Aligned_cols=117  Identities=18%  Similarity=0.170  Sum_probs=103.0

Q ss_pred             CCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC---
Q 028808           45 AQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND---  121 (203)
Q Consensus        45 APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~---  121 (203)
                      +|+|++.+.+|         ++++|+++.+|+ ++|++||++|||.|..+ ++.|++++++|+++++. +|+||.|+   
T Consensus         4 ~p~f~l~~~~g---------~~v~l~~~~~~k-~~ll~f~~t~Cp~c~~~-~~~l~~l~~~~~~~~v~-~v~is~d~~~~   71 (171)
T cd02969           4 APDFSLPDTDG---------KTYSLADFADGK-ALVVMFICNHCPYVKAI-EDRLNRLAKEYGAKGVA-VVAINSNDIEA   71 (171)
T ss_pred             CCCccccCCCC---------CEEeHHHHhCCC-EEEEEEECCCCccHHHH-HHHHHHHHHHHhhCCeE-EEEEecCcccc
Confidence            69999999876         789999942666 67888999999999999 99999999999989998 99999864   


Q ss_pred             -----HHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808          122 -----PYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       122 -----~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~  186 (203)
                           +...++|+++++++  ||+++|+++.+++.||+..           .|++|||| +|+|++....+
T Consensus        72 ~~~d~~~~~~~~~~~~~~~--~~~l~D~~~~~~~~~~v~~-----------~P~~~lid~~G~v~~~~~~~  129 (171)
T cd02969          72 YPEDSPENMKAKAKEHGYP--FPYLLDETQEVAKAYGAAC-----------TPDFFLFDPDGKLVYRGRID  129 (171)
T ss_pred             ccccCHHHHHHHHHHCCCC--ceEEECCchHHHHHcCCCc-----------CCcEEEECCCCeEEEeeccc
Confidence                 67889999999997  9999999999999999853           36799999 99999987544

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=99.87  E-value=7.5e-22  Score=160.65  Aligned_cols=131  Identities=18%  Similarity=0.246  Sum_probs=105.7

Q ss_pred             cccCCCccccCCCceEEeccccccCCCCCCceeeeccc-ccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCc
Q 028808           34 SVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKD-IFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID  112 (203)
Q Consensus        34 ~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~d-l~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~  112 (203)
                      .+++|++    ||+|+++|.+|         +.+++++ .++|| +++++||++|||+|.++ +|.+++.+++   .|++
T Consensus        45 ~~~vG~~----aP~f~l~d~~G---------~~v~l~~~~~~gk-~vvl~F~atwCp~C~~~-lp~l~~~~~~---~~~~  106 (189)
T TIGR02661        45 GPDVGDA----APIFNLPDFDG---------EPVRIGGSIAPGR-PTLLMFTAPSCPVCDKL-FPIIKSIARA---EETD  106 (189)
T ss_pred             CCCCCCc----CCCcEecCCCC---------CEEeccchhcCCC-EEEEEEECCCChhHHHH-HHHHHHHHHh---cCCc
Confidence            4789998    69999999886         7899953 14888 46667899999999999 9999987653   4788


Q ss_pred             EEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCCc
Q 028808          113 SVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSKM  191 (203)
Q Consensus       113 ~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~~  191 (203)
                       +++||.|+++.+++|+++++++  ++.+. .+++++++||+..           .|++|||| +|+|++....     -
T Consensus       107 -vv~Is~~~~~~~~~~~~~~~~~--~~~~~-~~~~i~~~y~v~~-----------~P~~~lID~~G~I~~~g~~-----~  166 (189)
T TIGR02661       107 -VVMISDGTPAEHRRFLKDHELG--GERYV-VSAEIGMAFQVGK-----------IPYGVLLDQDGKIRAKGLT-----N  166 (189)
T ss_pred             -EEEEeCCCHHHHHHHHHhcCCC--cceee-chhHHHHhccCCc-----------cceEEEECCCCeEEEccCC-----C
Confidence             9999999899999999999996  76554 5789999999853           47799999 9999986321     1


Q ss_pred             ccCCHHHHHhc
Q 028808          192 KVSGGDVILGQ  202 (203)
Q Consensus       192 ~~~~a~~vL~~  202 (203)
                      ..++.+++|+.
T Consensus       167 ~~~~le~ll~~  177 (189)
T TIGR02661       167 TREHLESLLEA  177 (189)
T ss_pred             CHHHHHHHHHH
Confidence            35678888775

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=99.87  E-value=4e-22  Score=159.85  Aligned_cols=125  Identities=16%  Similarity=0.220  Sum_probs=100.8

Q ss_pred             ccccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcC
Q 028808           31 AYASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKG  110 (203)
Q Consensus        31 ~~~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~g  110 (203)
                      ..+...+|++    ||+|++++.+|  +     .+.++++++.+|| +++++||++|||+|..+ +|.+++++    ++|
T Consensus        30 ~~~~~~vG~~----ap~f~l~~~~G--~-----~~~~~~~~~~~gk-~vll~F~a~wC~~C~~~-~p~l~~l~----~~~   92 (173)
T TIGR00385        30 ALPSALIGKP----VPAFPLAALRE--P-----LQAYTPEAFIQGK-PVLLNVWASWCPPCRAE-HPYLNELA----KDG   92 (173)
T ss_pred             cCcchhcCCC----CCCccccccCC--C-----CcccCHHHhcCCC-EEEEEEECCcCHHHHHH-HHHHHHHH----HcC
Confidence            3345678998    69999999875  1     1356767744676 67788999999999999 89887654    468


Q ss_pred             CcEEEEEecCC-HHHHHHHHHHhCCCCceE-EEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808          111 IDSVICVAVND-PYVMNGWAEKLQAKDVIE-FYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       111 v~~vi~IS~d~-~~~~~~~~~~~~l~~~fp-llsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~  186 (203)
                      ++ |++|+.++ ...+++|+++++++  || ++.|++++++++||+..           .|++|+|| ||+|++++.+.
T Consensus        93 ~~-vi~V~~~~~~~~~~~~~~~~~~~--f~~v~~D~~~~~~~~~~v~~-----------~P~~~~id~~G~i~~~~~G~  157 (173)
T TIGR00385        93 LP-IVGVDYKDQSQNALKFLKELGNP--YQAILIDPNGKLGLDLGVYG-----------APETFLVDGNGVILYRHAGP  157 (173)
T ss_pred             CE-EEEEECCCChHHHHHHHHHcCCC--CceEEECCCCchHHhcCCee-----------CCeEEEEcCCceEEEEEecc
Confidence            98 99999864 46678999999996  87 67899999999999853           47899999 99999999874

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=99.87  E-value=1.1e-21  Score=155.75  Aligned_cols=137  Identities=20%  Similarity=0.346  Sum_probs=115.5

Q ss_pred             cccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCC
Q 028808           32 YASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGI  111 (203)
Q Consensus        32 ~~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv  111 (203)
                      ...+++|++    +|+|++.+.+|         +.+++++ ++||+ ++++||++|||.|..+ ++.|.+++++|++.++
T Consensus        32 ~~~~~~g~~----~p~~~~~~~~g---------~~~~l~~-~~~k~-~~l~f~a~~C~~C~~~-~~~l~~~~~~~~~~~~   95 (173)
T PRK03147         32 KEKVQVGKE----APNFVLTDLEG---------KKIELKD-LKGKG-VFLNFWGTWCKPCEKE-MPYMNELYPKYKEKGV   95 (173)
T ss_pred             ccccCCCCC----CCCcEeecCCC---------CEEeHHH-cCCCE-EEEEEECCcCHHHHHH-HHHHHHHHHHhhcCCe
Confidence            356889999    59999999886         8899999 58875 6667889999999999 8999999999998889


Q ss_pred             cEEEEEecCCH-HHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCC
Q 028808          112 DSVICVAVNDP-YVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPS  189 (203)
Q Consensus       112 ~~vi~IS~d~~-~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~  189 (203)
                      + +++|+.|+. +.+++|.++++++  ||++.|.++++.+.||+..           .|++|+|| +|+|++.+.+..  
T Consensus        96 ~-vi~i~~d~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~v~~-----------~P~~~lid~~g~i~~~~~g~~--  159 (173)
T PRK03147         96 E-IIAVNVDETELAVKNFVNRYGLT--FPVAIDKGRQVIDAYGVGP-----------LPTTFLIDKDGKVVKVITGEM--  159 (173)
T ss_pred             E-EEEEEcCCCHHHHHHHHHHhCCC--ceEEECCcchHHHHcCCCC-----------cCeEEEECCCCcEEEEEeCCC--
Confidence            8 999999865 6789999999996  9999999999999999852           47799999 999999886643  


Q ss_pred             CcccCCHHHHHhc
Q 028808          190 KMKVSGGDVILGQ  202 (203)
Q Consensus       190 ~~~~~~a~~vL~~  202 (203)
                        +.++..+.|+.
T Consensus       160 --~~~~l~~~l~~  170 (173)
T PRK03147        160 --TEEQLEEYLEK  170 (173)
T ss_pred             --CHHHHHHHHHH
Confidence              23455555554

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=99.87  E-value=1.2e-21  Score=150.65  Aligned_cols=125  Identities=15%  Similarity=0.215  Sum_probs=102.5

Q ss_pred             CCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCC-CCccchhhHHHhHHHHHHcC---CcEEEEEecC
Q 028808           45 AQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGV-CSNQHVPSYKNNIDKFKAKG---IDSVICVAVN  120 (203)
Q Consensus        45 APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~-C~~ehl~~l~~~~~~f~~~g---v~~vi~IS~d  120 (203)
                      +|+|++.+.+|         +.++++++ +|| ++|++||++||+. |..+ ++.|++++++|+++|   ++ +++||.|
T Consensus         2 ~p~f~l~~~~g---------~~~~l~~~-~gk-~~vl~f~~~~C~~~C~~~-l~~l~~~~~~~~~~~~~~v~-~v~vs~d   68 (142)
T cd02968           2 GPDFTLTDQDG---------RPVTLSDL-KGK-PVLVYFGYTHCPDVCPTT-LANLAQALKQLGADGGDDVQ-VVFISVD   68 (142)
T ss_pred             CCceEEEcCCC---------CEEchHHh-CCC-EEEEEEEcCCCcccCHHH-HHHHHHHHHHhhHhhcCceE-EEEEEEC
Confidence            79999999876         89999995 998 5667789999997 9999 999999999999875   98 9999985


Q ss_pred             ----CHHHHHHHHHHhCCCCceEEEeeCC---chHHHHcCCccccccc---cCCCCcceEEEEEe-CCEEEEEEe
Q 028808          121 ----DPYVMNGWAEKLQAKDVIEFYGDFD---GSFHKSLDLGKDLSAA---LLGPRSERWSAYVE-DGRIKALNV  184 (203)
Q Consensus       121 ----~~~~~~~~~~~~~l~~~fpllsD~~---~~v~~~yGv~~~~~~~---g~~~~~~r~tfIId-dG~I~~~~~  184 (203)
                          +++.+++|+++++.+  |++++|++   ..++++||+.......   +.+....|++|||| +|+|++++-
T Consensus        69 ~~~d~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~  141 (142)
T cd02968          69 PERDTPEVLKAYAKAFGPG--WIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYYG  141 (142)
T ss_pred             CCCCCHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEeec
Confidence                457899999999975  99999985   7899999987643211   00011247899999 999999863

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=99.86  E-value=5.6e-21  Score=141.80  Aligned_cols=111  Identities=14%  Similarity=0.191  Sum_probs=92.7

Q ss_pred             CceEEeccccccCCCCCCceeeecccccC-CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHH
Q 028808           46 QDVSLQKARTWDEGVSSNFATTPIKDIFK-GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYV  124 (203)
Q Consensus        46 Pdf~l~~~~g~~~G~~~~~~~vsL~dl~~-gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~  124 (203)
                      |+|++.+.+|         +.++|+++ + || ++|++||++|||+|..+ +|.++++++++++ ++. +++++.++.+.
T Consensus         1 p~f~l~~~~G---------~~~~l~~~-~~gk-~vvl~F~~~wC~~C~~~-~p~l~~~~~~~~~-~~~-vi~v~~~~~~~   66 (114)
T cd02967           1 PTFDLTTIDG---------APVRIGGI-SPGR-PTLLFFLSPTCPVCKKL-LPVIRSIARAEAD-WLD-VVLASDGEKAE   66 (114)
T ss_pred             CCceeecCCC---------CEEEcccc-cCCC-eEEEEEECCCCcchHhH-hHHHHHHHHHhcC-CcE-EEEEeCCCHHH
Confidence            7999999876         88999994 6 87 55667899999999999 9999998888754 577 88888777888


Q ss_pred             HHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEe
Q 028808          125 MNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNV  184 (203)
Q Consensus       125 ~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~  184 (203)
                      .++|++++++. .||++.|  ..+++.||+..           .|++|||| +|+|++..+
T Consensus        67 ~~~~~~~~~~~-~~p~~~~--~~~~~~~~~~~-----------~P~~~vid~~G~v~~~~~  113 (114)
T cd02967          67 HQRFLKKHGLE-AFPYVLS--AELGMAYQVSK-----------LPYAVLLDEAGVIAAKGL  113 (114)
T ss_pred             HHHHHHHhCCC-CCcEEec--HHHHhhcCCCC-----------cCeEEEECCCCeEEeccc
Confidence            99999999985 4898874  56888898842           47899999 999998753

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=3.9e-21  Score=152.64  Aligned_cols=149  Identities=15%  Similarity=0.250  Sum_probs=125.1

Q ss_pred             ccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCc
Q 028808           33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID  112 (203)
Q Consensus        33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~  112 (203)
                      ..+.+|++    +|+|+..+..|          ++.+.|++.+.|.||+..|++|+|+|+.| +.++.++..+|.++|+.
T Consensus         4 ~~l~lgd~----~PNfea~Tt~g----------~i~fhd~~gdSW~vLFSHPaDFTPVCTTE-lgr~Akl~pEF~KRnvK   68 (224)
T KOG0854|consen    4 PRLRLGDT----VPNFEADTTVG----------KIKFHDYLGDSWGVLFSHPADFTPVCTTE-LGRFAKLAPEFDKRNVK   68 (224)
T ss_pred             CcccccCc----CCCcccccccc----------ceehhhhcccceEEEecCcccCCcchhHH-HHHHHhhChhhhhcCce
Confidence            34678999    59999987764          79999987778999999999999999999 99999999999999999


Q ss_pred             EEEEEecCCHHHHHHHHHHhC----C-C--CceEEEeeCCchHHHHcCCccccc--cccCCCCcceEEEEEe-CCEEEEE
Q 028808          113 SVICVAVNDPYVMNGWAEKLQ----A-K--DVIEFYGDFDGSFHKSLDLGKDLS--AALLGPRSERWSAYVE-DGRIKAL  182 (203)
Q Consensus       113 ~vi~IS~d~~~~~~~~~~~~~----l-~--~~fpllsD~~~~v~~~yGv~~~~~--~~g~~~~~~r~tfIId-dG~I~~~  182 (203)
                       .+++|+|+.++|+.|.+..+    . +  .+||++.|++++++-.||+.....  ..|+| .+.|++|||| +-+|+..
T Consensus        69 -lialS~d~vesH~~Wi~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~-~T~Ravfvi~pdkKirLs  146 (224)
T KOG0854|consen   69 -LIALSVDDVESHKDWIKDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDG-KTVRAVFVIDPDKKIRLS  146 (224)
T ss_pred             -EEEeehhhHHHHHHHHHHHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCC-ceEEEEEEECCCceEEEE
Confidence             99999999999999988762    1 1  369999999999999999986432  23454 4689999999 9999999


Q ss_pred             EeecCCCCcccCCHHHHHh
Q 028808          183 NVEEAPSKMKVSGGDVILG  201 (203)
Q Consensus       183 ~~~~~~~~~~~~~a~~vL~  201 (203)
                      ...+...+   ..-++||.
T Consensus       147 ~lYP~ttG---RN~dEiLR  162 (224)
T KOG0854|consen  147 FLYPSTTG---RNFDEILR  162 (224)
T ss_pred             EEcccccC---cCHHHHHH
Confidence            99987654   44555554

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=99.85  E-value=4.4e-21  Score=145.43  Aligned_cols=116  Identities=17%  Similarity=0.189  Sum_probs=97.3

Q ss_pred             CCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC-CH
Q 028808           44 AAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN-DP  122 (203)
Q Consensus        44 ~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d-~~  122 (203)
                      .+|+|++++.+|  .+     +.+++++ ++|| ++++.||++|||+|..+ +|.++++.+++   +++ |++|+.+ +.
T Consensus         2 ~~p~f~~~~~~g--~~-----~~~~~~~-~~gk-~vvv~F~a~~C~~C~~~-~~~l~~l~~~~---~~~-vv~v~~~~~~   67 (127)
T cd03010           2 PAPAFSLPALPG--PD-----KTLTSAD-LKGK-PYLLNVWASWCAPCREE-HPVLMALARQG---RVP-IYGINYKDNP   67 (127)
T ss_pred             CCCCcccccccC--CC-----ccccHHH-cCCC-EEEEEEEcCcCHHHHHH-HHHHHHHHHhc---CcE-EEEEECCCCH
Confidence            379999999875  12     6799999 4898 46677899999999999 99999886654   588 9999974 56


Q ss_pred             HHHHHHHHHhCCCCce-EEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808          123 YVMNGWAEKLQAKDVI-EFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       123 ~~~~~~~~~~~l~~~f-pllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~  186 (203)
                      +.+++|+++++++  | +++.|.++++++.||+..           .|++|+|| +|+|++++.+.
T Consensus        68 ~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~~v~~-----------~P~~~~ld~~G~v~~~~~G~  120 (127)
T cd03010          68 ENALAWLARHGNP--YAAVGFDPDGRVGIDLGVYG-----------VPETFLIDGDGIIRYKHVGP  120 (127)
T ss_pred             HHHHHHHHhcCCC--CceEEECCcchHHHhcCCCC-----------CCeEEEECCCceEEEEEecc
Confidence            8899999999997  5 577999999999999963           47799999 99999999875

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=1.3e-20  Score=146.14  Aligned_cols=142  Identities=20%  Similarity=0.325  Sum_probs=119.4

Q ss_pred             ccccccccc--cccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHh
Q 028808           25 IPTSSRAYA--SVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNN  102 (203)
Q Consensus        25 ~~~~~~~~~--~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~  102 (203)
                      +...+-...  .+++|++    ||+|++.+.+.         +.++|.+ +.||+.||..||+-.+|+|..| ...|++.
T Consensus         6 fkgnpv~l~g~~~~vGd~----ap~ftl~~~dL---------~~v~l~~-~~gk~~vi~v~PSiDT~VC~~q-vr~Fn~~   70 (158)
T COG2077           6 FKGNPVTLKGNEPQVGDK----APDFTLVGKDL---------NDVSLAD-FAGKKKVISVFPSIDTPVCATQ-VRKFNEE   70 (158)
T ss_pred             eCCCeEEecCCCCccCCc----CCceEEEcCcc---------cceeccc-cCCceEEEEEccCCCCchhhHH-HHHHHHH
Confidence            344444443  4899999    69999998764         7899999 6999999999999999999999 8999988


Q ss_pred             HHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeC-CchHHHHcCCccccccccCCCCcceEEEEEe-CCEEE
Q 028808          103 IDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDF-DGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIK  180 (203)
Q Consensus       103 ~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~-~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~  180 (203)
                      +.++..  .. |++||.|.|+++++||..+|++ |...+||. ++++.++||+...+-+  +.....|++|++| +|+|.
T Consensus        71 aa~~~~--~~-Vl~IS~DLPFAq~RfC~aeGi~-nv~~lSd~r~~~Fge~yGv~I~egp--L~gLlARaV~V~De~g~V~  144 (158)
T COG2077          71 AAKLGN--TV-VLCISMDLPFAQKRFCGAEGIE-NVITLSDFRDRAFGENYGVLINEGP--LAGLLARAVFVLDENGKVT  144 (158)
T ss_pred             HhccCC--cE-EEEEeCCChhHHhhhhhhcCcc-cceEhhhhhhhhhhHhhCEEecccc--ccCeeeeEEEEEcCCCcEE
Confidence            777653  66 9999999999999999999998 89999997 7889999999875321  1123679999999 99999


Q ss_pred             EEEeecC
Q 028808          181 ALNVEEA  187 (203)
Q Consensus       181 ~~~~~~~  187 (203)
                      |.++.++
T Consensus       145 y~elv~e  151 (158)
T COG2077         145 YSELVPE  151 (158)
T ss_pred             EEEccch
Confidence            9998765

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=99.83  E-value=5.8e-20  Score=149.04  Aligned_cols=125  Identities=14%  Similarity=0.149  Sum_probs=100.8

Q ss_pred             ccccCCCccccCCCceEEecc-----ccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHH
Q 028808           33 ASVAVGSDIVSAAQDVSLQKA-----RTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFK  107 (203)
Q Consensus        33 ~~~~~G~~~~~~APdf~l~~~-----~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~  107 (203)
                      ..+++|+++    |.+++.+-     +|   | +-..+.++++++ +|| |.|++|||+||++|..| +|.+.++    +
T Consensus        21 ~~~~~~~~~----p~v~~~~~ge~~~~~---~-~~~y~~~~~~~l-~GK-V~lvn~~Aswc~~c~~e-~P~l~~l----~   85 (184)
T TIGR01626        21 HNLQVEQSV----PSVGVSEYGEIVLSG---K-DTVYQPWGSAEL-AGK-VRVVHHIAGRTSAKEXN-ASLIDAI----K   85 (184)
T ss_pred             hhhhcCCcC----CceEecCCceEEEcC---C-cccceeccHHHc-CCC-EEEEEEEecCCChhhcc-chHHHHH----H
Confidence            469999995    99988764     32   1 122478999994 898 89999999999999999 6988886    6


Q ss_pred             HcCCcEE------EEEecCCH-H----HHHHHHHHhCCCCceE---EEeeCCchHHHHcCCccccccccCCCCcceEE-E
Q 028808          108 AKGIDSV------ICVAVNDP-Y----VMNGWAEKLQAKDVIE---FYGDFDGSFHKSLDLGKDLSAALLGPRSERWS-A  172 (203)
Q Consensus       108 ~~gv~~v------i~IS~d~~-~----~~~~~~~~~~l~~~fp---llsD~~~~v~~~yGv~~~~~~~g~~~~~~r~t-f  172 (203)
                      ++|+. +      ++|+.|+. .    -.++|+++.+.+  ||   ++.|.++.++++||+..           .|.+ |
T Consensus        86 ~~~~~-~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~--~P~~~vllD~~g~v~~~~gv~~-----------~P~T~f  151 (184)
T TIGR01626        86 AAKFP-PVKYQTTTIINADDAIVGTGMFVKSSAKKGKKE--NPWSQVVLDDKGAVKNAWQLNS-----------EDSAII  151 (184)
T ss_pred             HcCCC-cccccceEEEECccchhhHHHHHHHHHHHhccc--CCcceEEECCcchHHHhcCCCC-----------CCceEE
Confidence            77898 8      99999863 2    255667777775  77   99999999999999864           2446 8


Q ss_pred             EEe-CCEEEEEEeec
Q 028808          173 YVE-DGRIKALNVEE  186 (203)
Q Consensus       173 IId-dG~I~~~~~~~  186 (203)
                      ||| +|+|++++.|.
T Consensus       152 VIDk~GkVv~~~~G~  166 (184)
T TIGR01626       152 VLDKTGKVKFVKEGA  166 (184)
T ss_pred             EECCCCcEEEEEeCC
Confidence            999 99999999985

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=99.82  E-value=4e-20  Score=145.00  Aligned_cols=105  Identities=11%  Similarity=0.249  Sum_probs=85.7

Q ss_pred             eeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHc-------CCcEEEEEecCCH-HHHHHHHHHhCCCC
Q 028808           65 ATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAK-------GIDSVICVAVNDP-YVMNGWAEKLQAKD  136 (203)
Q Consensus        65 ~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~-------gv~~vi~IS~d~~-~~~~~~~~~~~l~~  136 (203)
                      +.++|++ ++|| +|+++|||+|||+|..| +|.|+++|++++++       +++ ||+||.|.. ..+++|.++++++.
T Consensus        16 ~~~~ls~-~kgk-~vlL~FwAsWCppCr~e-~P~L~~ly~~~~~~~~~~~~~~~~-vV~Vs~D~~~~~~~~f~~~~~~~~   91 (146)
T cd03008          16 EREIVAR-LENR-VLLLFFGAVVSPQCQLF-APKLKDFFVRLTDEFYVDRSAQLA-LVYVSMDQSEQQQESFLKDMPKKW   91 (146)
T ss_pred             ccccHHH-hCCC-EEEEEEECCCChhHHHH-HHHHHHHHHHHHhhcccccCCCEE-EEEEECCCCHHHHHHHHHHCCCCc
Confidence            5789999 5998 78889999999999999 99999999988764       688 999999854 56889999999751


Q ss_pred             ce-EEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEe
Q 028808          137 VI-EFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNV  184 (203)
Q Consensus       137 ~f-pllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~  184 (203)
                      .+ |+..+.+.+++++||+.           ..|++|||| +|+|+....
T Consensus        92 ~~~p~~~~~~~~l~~~y~v~-----------~iPt~vlId~~G~Vv~~~~  130 (146)
T cd03008          92 LFLPFEDEFRRELEAQFSVE-----------ELPTVVVLKPDGDVLAANA  130 (146)
T ss_pred             eeecccchHHHHHHHHcCCC-----------CCCEEEEECCCCcEEeeCh
Confidence            12 44444467899999984           258899999 999998753

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=99.81  E-value=2.8e-19  Score=164.71  Aligned_cols=133  Identities=15%  Similarity=0.201  Sum_probs=108.0

Q ss_pred             cccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcE
Q 028808           34 SVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDS  113 (203)
Q Consensus        34 ~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~  113 (203)
                      .++.+++    +|+|++.|.+|         +.++++   +|| +||++||++|||+|..+ +|.|++++++++..+++ 
T Consensus        31 ~~~~~~~----lP~f~l~D~dG---------~~v~ls---kGK-pVvV~FWATWCppCk~e-mP~L~eL~~e~k~~~v~-   91 (521)
T PRK14018         31 TATVPHT----LSTLKTADNRP---------ASVYLK---KDK-PTLIKFWASWCPLCLSE-LGETEKWAQDAKFSSAN-   91 (521)
T ss_pred             cccccCC----CCCeEeecCCC---------ceeecc---CCC-EEEEEEEcCCCHHHHHH-HHHHHHHHHHhccCCeE-
Confidence            3666777    69999999986         778876   677 78889999999999999 99999999999878898 


Q ss_pred             EEEEecC------CHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808          114 VICVAVN------DPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       114 vi~IS~d------~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~  186 (203)
                      ||+|+.+      +....++|.+.++++ ++|++.|.++++++.||+.           ..|++|||| +|+|++...+.
T Consensus        92 VI~Vs~~~~~~e~~~~~~~~~~~~~~y~-~~pV~~D~~~~lak~fgV~-----------giPTt~IIDkdGkIV~~~~G~  159 (521)
T PRK14018         92 LITVASPGFLHEKKDGDFQKWYAGLDYP-KLPVLTDNGGTLAQSLNIS-----------VYPSWAIIGKDGDVQRIVKGS  159 (521)
T ss_pred             EEEEecccccccccHHHHHHHHHhCCCc-ccceeccccHHHHHHcCCC-----------CcCeEEEEcCCCeEEEEEeCC
Confidence            9999863      234567788888775 5999999999999999985           358899999 99999999875


Q ss_pred             CCCCcccCCHHHHHh
Q 028808          187 APSKMKVSGGDVILG  201 (203)
Q Consensus       187 ~~~~~~~~~a~~vL~  201 (203)
                      -    +.++..++|+
T Consensus       160 ~----~~eeL~a~Ie  170 (521)
T PRK14018        160 I----SEAQALALIR  170 (521)
T ss_pred             C----CHHHHHHHHH
Confidence            3    2344444443

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=99.79  E-value=2e-18  Score=129.64  Aligned_cols=108  Identities=15%  Similarity=0.171  Sum_probs=92.8

Q ss_pred             CceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC--HH
Q 028808           46 QDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND--PY  123 (203)
Q Consensus        46 Pdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~--~~  123 (203)
                      |+|++++.+|         +.++++++ +|| +++++||++|||+|..+ +|.+++++++     +. +++|+.|+  ++
T Consensus         1 p~f~l~~~~g---------~~~~~~~~-~~k-~~vl~F~~~~C~~C~~~-~~~l~~~~~~-----~~-~i~i~~~~~~~~   62 (123)
T cd03011           1 PLFTATTLDG---------EQFDLESL-SGK-PVLVYFWATWCPVCRFT-SPTVNQLAAD-----YP-VVSVALRSGDDG   62 (123)
T ss_pred             CCceeecCCC---------CEeeHHHh-CCC-EEEEEEECCcChhhhhh-ChHHHHHHhh-----CC-EEEEEccCCCHH
Confidence            7999999876         78999994 887 56777889999999999 9999988765     56 88998764  68


Q ss_pred             HHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEee
Q 028808          124 VMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVE  185 (203)
Q Consensus       124 ~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~  185 (203)
                      .+++|.++++++  ||++.|.+.++++.|++..           .|+.+||| +| |+++..+
T Consensus        63 ~~~~~~~~~~~~--~~~~~d~~~~~~~~~~i~~-----------~P~~~vid~~g-i~~~~~g  111 (123)
T cd03011          63 AVARFMQKKGYG--FPVINDPDGVISARWGVSV-----------TPAIVIVDPGG-IVFVTTG  111 (123)
T ss_pred             HHHHHHHHcCCC--ccEEECCCcHHHHhCCCCc-----------ccEEEEEcCCC-eEEEEec
Confidence            899999999996  9999999999999999853           47789999 78 9988865

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=99.79  E-value=1.3e-18  Score=126.45  Aligned_cols=112  Identities=26%  Similarity=0.458  Sum_probs=97.8

Q ss_pred             ceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC--HHH
Q 028808           47 DVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND--PYV  124 (203)
Q Consensus        47 df~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~--~~~  124 (203)
                      +|++.+.+|         +.++++++ +|| .++++||++||+.|... ++.+.++.+++++.++. +++|+.|.  ++.
T Consensus         1 ~~~~~~~~g---------~~~~~~~~-~~k-~~ll~f~~~~C~~C~~~-~~~l~~~~~~~~~~~~~-~~~v~~d~~~~~~   67 (116)
T cd02966           1 DFSLPDLDG---------KPVSLSDL-KGK-VVLVNFWASWCPPCRAE-MPELEALAKEYKDDGVE-VVGVNVDDDDPAA   67 (116)
T ss_pred             CccccCCCC---------CEeehHHc-CCC-EEEEEeecccChhHHHH-hHHHHHHHHHhCCCCeE-EEEEECCCCCHHH
Confidence            467777765         78999995 787 56778899999999999 99999999999877898 99999998  889


Q ss_pred             HHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEe
Q 028808          125 MNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNV  184 (203)
Q Consensus       125 ~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~  184 (203)
                      .++|.++++.+  ++++.|.+.++.+.||+..           .|+++|+| +|+|++...
T Consensus        68 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----------~P~~~l~d~~g~v~~~~~  115 (116)
T cd02966          68 VKAFLKKYGIT--FPVLLDPDGELAKAYGVRG-----------LPTTFLIDRDGRIRARHV  115 (116)
T ss_pred             HHHHHHHcCCC--cceEEcCcchHHHhcCcCc-----------cceEEEECCCCcEEEEec
Confidence            99999999975  9999999999999999853           36789999 999998864

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.75  E-value=5e-18  Score=168.19  Aligned_cols=127  Identities=20%  Similarity=0.176  Sum_probs=105.5

Q ss_pred             ccccCCCccccCCCceEEeccccccCCCCCCceeeec-ccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCC
Q 028808           33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPI-KDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGI  111 (203)
Q Consensus        33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL-~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv  111 (203)
                      .....|++    +|+|+.++..  .+|     +++++ ++ ++|| +||++||++||++|..| +|.|++++++|+++|+
T Consensus       389 ~~~~~g~~----~p~f~~~~~~--~~g-----~~~~l~~~-lkGK-~vll~FWAsWC~pC~~e-~P~L~~l~~~y~~~~~  454 (1057)
T PLN02919        389 ESKKTATK----VPEFPPKLDW--LNT-----APLQFRRD-LKGK-VVILDFWTYCCINCMHV-LPDLEFLEKKYKDQPF  454 (1057)
T ss_pred             hccccCCc----CCCCcccccc--cCC-----ccccchhh-cCCC-EEEEEEECCcChhHHhH-hHHHHHHHHHcCCCCe
Confidence            34667888    6999987632  122     78888 46 5988 78889999999999999 9999999999999999


Q ss_pred             cEEEEEec---C---CHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEe
Q 028808          112 DSVICVAV---N---DPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNV  184 (203)
Q Consensus       112 ~~vi~IS~---d---~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~  184 (203)
                      . ||+|+.   |   +....++|.++++++  ||++.|.++++.++||+.           ..|++|||| +|+|++++.
T Consensus       455 ~-vvgV~~~~~D~~~~~~~~~~~~~~~~i~--~pvv~D~~~~~~~~~~V~-----------~iPt~ilid~~G~iv~~~~  520 (1057)
T PLN02919        455 T-VVGVHSAKFDNEKDLEAIRNAVLRYNIS--HPVVNDGDMYLWRELGVS-----------SWPTFAVVSPNGKLIAQLS  520 (1057)
T ss_pred             E-EEEEecccccccccHHHHHHHHHHhCCC--ccEEECCchHHHHhcCCC-----------ccceEEEECCCCeEEEEEe
Confidence            8 999974   2   345678899999997  999999999999999984           358899999 999999987


Q ss_pred             ecC
Q 028808          185 EEA  187 (203)
Q Consensus       185 ~~~  187 (203)
                      ++.
T Consensus       521 G~~  523 (1057)
T PLN02919        521 GEG  523 (1057)
T ss_pred             ccc
Confidence            643

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=99.74  E-value=3.4e-18  Score=130.33  Aligned_cols=104  Identities=13%  Similarity=0.291  Sum_probs=81.8

Q ss_pred             eeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHc--CCcEEEEEecCCH-HHHHHHHHHhCCCCceEEE
Q 028808           65 ATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAK--GIDSVICVAVNDP-YVMNGWAEKLQAKDVIEFY  141 (203)
Q Consensus        65 ~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~--gv~~vi~IS~d~~-~~~~~~~~~~~l~~~fpll  141 (203)
                      +.++|++ ++|| +||++||++|||+|..+ +|.+++++++++++  +++ |++||.|.. ...+++.++++.. .+|+.
T Consensus         9 ~~v~l~~-~~gk-~vll~Fwa~wC~~C~~~-~p~l~~~~~~~~~~~~~~~-vv~is~d~~~~~~~~~~~~~~~~-~~~~~   83 (131)
T cd03009           9 GKVPVSS-LEGK-TVGLYFSASWCPPCRAF-TPKLVEFYEKLKESGKNFE-IVFISWDRDEESFNDYFSKMPWL-AVPFS   83 (131)
T ss_pred             CCccHHH-hCCc-EEEEEEECCCChHHHHH-hHHHHHHHHHHHhcCCCEE-EEEEECCCCHHHHHHHHHcCCee-EcccC
Confidence            8999999 5998 67889999999999999 99999999999876  787 999999865 3455666655431 23322


Q ss_pred             -eeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEe
Q 028808          142 -GDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNV  184 (203)
Q Consensus       142 -sD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~  184 (203)
                       +|.+..++++||+..           .|++|||| +|+|++...
T Consensus        84 ~~~~~~~~~~~~~v~~-----------~P~~~lid~~G~i~~~~~  117 (131)
T cd03009          84 DRERRSRLNRTFKIEG-----------IPTLIILDADGEVVTTDA  117 (131)
T ss_pred             CHHHHHHHHHHcCCCC-----------CCEEEEECCCCCEEcccH
Confidence             355678999999853           47899999 999998754

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=99.74  E-value=9.1e-18  Score=128.57  Aligned_cols=103  Identities=15%  Similarity=0.264  Sum_probs=83.7

Q ss_pred             eeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHc--CCcEEEEEecCCH-HHHHHHHHHhCCCCceEEE
Q 028808           65 ATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAK--GIDSVICVAVNDP-YVMNGWAEKLQAKDVIEFY  141 (203)
Q Consensus        65 ~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~--gv~~vi~IS~d~~-~~~~~~~~~~~l~~~fpll  141 (203)
                      ++++|++ ++|| +||++||++||++|..+ +|.++++++++++.  +++ |++||.|.. ...++|.++++ +  +..+
T Consensus         8 ~~v~l~~-~~Gk-~vll~F~atwC~~C~~~-~p~l~~l~~~~~~~~~~v~-vi~Vs~d~~~~~~~~~~~~~~-~--~~~~   80 (132)
T cd02964           8 GVVPVSA-LEGK-TVGLYFSASWCPPCRAF-TPKLVEFYEKLKEEGKNFE-IVFVSRDRSEESFNEYFSEMP-P--WLAV   80 (132)
T ss_pred             ccccHHH-hCCC-EEEEEEECCCCchHHHH-HHHHHHHHHHHhhcCCCeE-EEEEecCCCHHHHHHHHhcCC-C--eEee
Confidence            6899999 5997 78889999999999999 99999999999875  788 999999854 57889999997 3  2222


Q ss_pred             --ee--CCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEee
Q 028808          142 --GD--FDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVE  185 (203)
Q Consensus       142 --sD--~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~  185 (203)
                        .|  ....+++.||+..           .|+++||| +|+|++....
T Consensus        81 ~~~d~~~~~~~~~~~~v~~-----------iPt~~lid~~G~iv~~~~~  118 (132)
T cd02964          81 PFEDEELRELLEKQFKVEG-----------IPTLVVLKPDGDVVTTNAR  118 (132)
T ss_pred             ccCcHHHHHHHHHHcCCCC-----------CCEEEEECCCCCEEchhHH
Confidence              33  2356788898853           47899999 9999987654

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=99.71  E-value=1.3e-16  Score=129.65  Aligned_cols=84  Identities=11%  Similarity=0.207  Sum_probs=73.4

Q ss_pred             CCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC----
Q 028808           45 AQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN----  120 (203)
Q Consensus        45 APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d----  120 (203)
                      +++|++.+.+|         +.++|++ ++|| +||+.|||+||+.| .| ++.|++++++|+++|+. |+|+++|    
T Consensus         5 ~~~f~~~~~~G---------~~v~Ls~-~~GK-vvLVvf~AS~C~~~-~q-~~~L~~L~~~y~~~gl~-Vlg~p~nqf~~   70 (183)
T PRK10606          5 ILTTVVTTIDG---------EVTTLEK-YAGN-VLLIVNVASKCGLT-PQ-YEQLENIQKAWADQGFV-VLGFPCNQFLG   70 (183)
T ss_pred             ccCcEeECCCC---------CEEeHHH-hCCC-EEEEEEEeCCCCCc-HH-HHHHHHHHHHHhhCCeE-EEEeecccccc
Confidence            59999999986         8999999 5998 67778899999988 58 99999999999999998 9999984    


Q ss_pred             ----CHHHHHHHHH-HhCCCCceEEEeeC
Q 028808          121 ----DPYVMNGWAE-KLQAKDVIEFYGDF  144 (203)
Q Consensus       121 ----~~~~~~~~~~-~~~l~~~fpllsD~  144 (203)
                          +.+.+++|++ +++++  ||+++|.
T Consensus        71 qe~~~~~ei~~f~~~~~g~~--Fpv~~k~   97 (183)
T PRK10606         71 QEPGSDEEIKTYCRTTWGVT--FPMFSKI   97 (183)
T ss_pred             CCCCCHHHHHHHHHHccCCC--ceeEEEE
Confidence                5678899997 68886  9999544

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=99.70  E-value=9.2e-17  Score=129.87  Aligned_cols=100  Identities=10%  Similarity=-0.002  Sum_probs=80.1

Q ss_pred             CCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHH
Q 028808           45 AQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYV  124 (203)
Q Consensus        45 APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~  124 (203)
                      .|+|++.  +|         +.++++++ +     |++||++|||+|.+| +|.|+++++++   |+. |++||.|+.. 
T Consensus        55 ~~~f~l~--dG---------~~v~lsd~-~-----lV~FwaswCp~C~~e-~P~L~~l~~~~---g~~-Vi~Vs~D~~~-  111 (181)
T PRK13728         55 PRWFRLS--NG---------RQVNLADW-K-----VVLFMQGHCPYCHQF-DPVLKQLAQQY---GFS-VFPYTLDGQG-  111 (181)
T ss_pred             CCccCCC--CC---------CEeehhHc-e-----EEEEECCCCHhHHHH-HHHHHHHHHHc---CCE-EEEEEeCCCC-
Confidence            5899985  44         89999995 4     556999999999999 99999998886   688 9999998542 


Q ss_pred             HHHHHHHhCCCCceEEEee-CCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEE-EEeec
Q 028808          125 MNGWAEKLQAKDVIEFYGD-FDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKA-LNVEE  186 (203)
Q Consensus       125 ~~~~~~~~~l~~~fpllsD-~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~-~~~~~  186 (203)
                              ...  ||++.| .++.+.+.||+..         ...|++|||| +|+|++ .++|.
T Consensus       112 --------~~~--fPv~~dd~~~~~~~~~g~~~---------~~iPttfLId~~G~i~~~~~~G~  157 (181)
T PRK13728        112 --------DTA--FPEALPAPPDVMQTFFPNIP---------VATPTTFLVNVNTLEALPLLQGA  157 (181)
T ss_pred             --------CCC--CceEecCchhHHHHHhCCCC---------CCCCeEEEEeCCCcEEEEEEECC
Confidence                    244  999996 6777888898621         1358899999 999975 77764

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=99.55  E-value=3.9e-15  Score=107.07  Aligned_cols=91  Identities=18%  Similarity=0.311  Sum_probs=69.9

Q ss_pred             CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHH-HcCCcEEEEEecCCH-HHHHHHHHHhCCCC-ceEEEeeCCchHHHH
Q 028808           75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFK-AKGIDSVICVAVNDP-YVMNGWAEKLQAKD-VIEFYGDFDGSFHKS  151 (203)
Q Consensus        75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~-~~gv~~vi~IS~d~~-~~~~~~~~~~~l~~-~fpllsD~~~~v~~~  151 (203)
                      || ++++.||++||+.|..+ +|.|.+++++++ +.+++ +|+||.|.. ...+++.++++.+. .+++-.|...++.+.
T Consensus         1 gK-~~ll~fwa~~c~~c~~~-~~~l~~l~~~~~~~~~v~-~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   77 (95)
T PF13905_consen    1 GK-PVLLYFWASWCPPCKKE-LPKLKELYKKYKKKDDVE-FVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKK   77 (95)
T ss_dssp             TS-EEEEEEE-TTSHHHHHH-HHHHHHHHHHHTTTTTEE-EEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHH
T ss_pred             CC-EEEEEEECCCCHHHHHH-HHHHHHHHHHhCCCCCEE-EEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHH
Confidence            56 67888999999999999 999999999998 66788 999999864 67888888886641 223333346778888


Q ss_pred             cCCccccccccCCCCcceEEEEEe-CCEE
Q 028808          152 LDLGKDLSAALLGPRSERWSAYVE-DGRI  179 (203)
Q Consensus       152 yGv~~~~~~~g~~~~~~r~tfIId-dG~I  179 (203)
                      |++..           .|+.+||| +|+|
T Consensus        78 ~~i~~-----------iP~~~lld~~G~I   95 (95)
T PF13905_consen   78 YGING-----------IPTLVLLDPDGKI   95 (95)
T ss_dssp             TT-TS-----------SSEEEEEETTSBE
T ss_pred             CCCCc-----------CCEEEEECCCCCC
Confidence            98853           57899999 9987

...

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=99.49  E-value=7.5e-14  Score=110.33  Aligned_cols=103  Identities=10%  Similarity=-0.005  Sum_probs=69.2

Q ss_pred             eeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeC
Q 028808           65 ATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDF  144 (203)
Q Consensus        65 ~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~  144 (203)
                      ++++++++      .|++||++|||+|.+| +|.++++++++   |+. |++|+.|+..          .+ .||...|.
T Consensus        45 ~~~~l~~~------~lvnFWAsWCppCr~e-~P~L~~l~~~~---~~~-Vi~Vs~d~~~----------~~-~fp~~~~~  102 (153)
T TIGR02738        45 RHANQDDY------ALVFFYQSTCPYCHQF-APVLKRFSQQF---GLP-VYAFSLDGQG----------LT-GFPDPLPA  102 (153)
T ss_pred             hhhhcCCC------EEEEEECCCChhHHHH-HHHHHHHHHHc---CCc-EEEEEeCCCc----------cc-ccccccCC
Confidence            66776663      2778999999999999 99999998876   588 9999998642          11 36766665


Q ss_pred             CchHH-HHcCCccccccccCCCCcceEEEEEe-CCEE-EEEEeecCCCCcccCCHHHHHh
Q 028808          145 DGSFH-KSLDLGKDLSAALLGPRSERWSAYVE-DGRI-KALNVEEAPSKMKVSGGDVILG  201 (203)
Q Consensus       145 ~~~v~-~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I-~~~~~~~~~~~~~~~~a~~vL~  201 (203)
                      +.... +.|+..        +.+..|++|||| +|++ +.++.+.    .+.+..++.++
T Consensus       103 ~~~~~~~~~~~~--------~v~~iPTt~LID~~G~~i~~~~~G~----~s~~~l~~~I~  150 (153)
T TIGR02738       103 TPEVMQTFFPNP--------RPVVTPATFLVNVNTRKAYPVLQGA----VDEAELANRMD  150 (153)
T ss_pred             chHHHHHHhccC--------CCCCCCeEEEEeCCCCEEEEEeecc----cCHHHHHHHHH
Confidence            55544 334221        112468899999 8765 5567663    23344444444

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>TIGR02740 TraF-like TraF-like protein

Probab=99.19  E-value=1.5e-11  Score=105.64  Aligned_cols=139  Identities=17%  Similarity=0.186  Sum_probs=93.3

Q ss_pred             hHHHHhhcChhhHHhhhhhccccccccccccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEe
Q 028808            4 ASLILKRSSPYAIRSVIDSLRIPTSSRAYASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGL   83 (203)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f   83 (203)
                      -..++.+++-+++.|...-+.=|.-.....     .+    ++.|.......    .....+...++++ +|+ ++|++|
T Consensus       109 q~~~~~ka~~Fa~~~~~~~~~~P~Ldy~~~-----~P----~~~~a~~~~~~----~~~~~~~~~l~~l-~~k-~~Lv~F  173 (271)
T TIGR02740       109 QRIMLDKASRFADVSQRVIWTDPILDETLR-----RP----VSTLALDAHDT----TAKKQKDRVMKDL-AKK-SGLFFF  173 (271)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCcccc-----CC----chHHHHHHHHH----HHHHHHHHHHHHh-cCC-eEEEEE
Confidence            346788888899888776654333222211     12    24444443321    0001145889994 887 678899


Q ss_pred             eCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccC
Q 028808           84 PGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALL  163 (203)
Q Consensus        84 ~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~  163 (203)
                      |++|||+|..+ +|.|+++++++   |+. |++||.|....          + .||.+ +.+..+++.||+..       
T Consensus       174 ~AswCp~C~~~-~P~L~~la~~y---g~~-Vi~VsvD~~~~----------~-~fp~~-~~d~~la~~~gV~~-------  229 (271)
T TIGR02740       174 FKSDCPYCHQQ-APILQAFEDRY---GIE-VLPVSVDGGPL----------P-GFPNA-RPDAGQAQQLKIRT-------  229 (271)
T ss_pred             ECCCCccHHHH-hHHHHHHHHHc---CcE-EEEEeCCCCcc----------c-cCCcc-cCCHHHHHHcCCCc-------
Confidence            99999999999 89999998876   587 99999986421          1 25555 55677899999853       


Q ss_pred             CCCcceEEEEEe-C-CEEEEEEee
Q 028808          164 GPRSERWSAYVE-D-GRIKALNVE  185 (203)
Q Consensus       164 ~~~~~r~tfIId-d-G~I~~~~~~  185 (203)
                          .|++||+| + |+|..+..|
T Consensus       230 ----vPtl~Lv~~~~~~v~~v~~G  249 (271)
T TIGR02740       230 ----VPAVFLADPDPNQFTPIGFG  249 (271)
T ss_pred             ----CCeEEEEECCCCEEEEEEeC
Confidence                57899998 5 566656554

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.18  E-value=2.1e-11  Score=95.03  Aligned_cols=86  Identities=13%  Similarity=0.261  Sum_probs=63.8

Q ss_pred             eeeccccc-CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeC
Q 028808           66 TTPIKDIF-KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDF  144 (203)
Q Consensus        66 ~vsL~dl~-~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~  144 (203)
                      ...+.+.. +|| +||++||++||++|... +|.|.++++++.+. +. ++.|..|...                     
T Consensus        10 ~~~~~~a~~~gk-~vvV~F~A~WC~~C~~~-~p~l~~l~~~~~~~-~~-~v~v~vd~~~---------------------   64 (142)
T cd02950          10 STPPEVALSNGK-PTLVEFYADWCTVCQEM-APDVAKLKQKYGDQ-VN-FVMLNVDNPK---------------------   64 (142)
T ss_pred             cCCHHHHHhCCC-EEEEEEECCcCHHHHHh-HHHHHHHHHHhccC-ee-EEEEEcCCcc---------------------
Confidence            34444432 465 67888999999999999 99999999998653 66 8888886521                     


Q ss_pred             CchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecC
Q 028808          145 DGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEA  187 (203)
Q Consensus       145 ~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~  187 (203)
                      ...++++|++.           ..|+++++| +|+++....+..
T Consensus        65 ~~~~~~~~~V~-----------~iPt~v~~~~~G~~v~~~~G~~   97 (142)
T cd02950          65 WLPEIDRYRVD-----------GIPHFVFLDREGNEEGQSIGLQ   97 (142)
T ss_pred             cHHHHHHcCCC-----------CCCEEEEECCCCCEEEEEeCCC
Confidence            11356778774           357889998 999999988753

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.16  E-value=1.8e-10  Score=84.69  Aligned_cols=78  Identities=12%  Similarity=0.107  Sum_probs=58.7

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      +|+ +||+.||++||++|... +|.|+++++++  .++. ++.|+.|.....                    ..++++|+
T Consensus        14 ~~k-~vvv~F~a~wC~~C~~~-~p~l~~la~~~--~~v~-~~~vd~d~~~~~--------------------~~l~~~~~   68 (103)
T cd02985          14 KGR-LVVLEFALKHSGPSVKI-YPTMVKLSRTC--NDVV-FLLVNGDENDST--------------------MELCRREK   68 (103)
T ss_pred             CCC-EEEEEEECCCCHhHHHH-hHHHHHHHHHC--CCCE-EEEEECCCChHH--------------------HHHHHHcC
Confidence            566 78889999999999999 89999999988  4577 888888763221                    24566677


Q ss_pred             CccccccccCCCCcceEEEEE-eCCEEEEEEeecCC
Q 028808          154 LGKDLSAALLGPRSERWSAYV-EDGRIKALNVEEAP  188 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfII-ddG~I~~~~~~~~~  188 (203)
                      +..           .|+ |++ .||+++..+.+.++
T Consensus        69 V~~-----------~Pt-~~~~~~G~~v~~~~G~~~   92 (103)
T cd02985          69 IIE-----------VPH-FLFYKDGEKIHEEEGIGP   92 (103)
T ss_pred             CCc-----------CCE-EEEEeCCeEEEEEeCCCH
Confidence            643           354 555 49999999887654

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems

Probab=99.13  E-value=8.2e-10  Score=88.83  Aligned_cols=125  Identities=17%  Similarity=0.249  Sum_probs=88.0

Q ss_pred             CCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCC-CCCccchhhHHHhHHHHHHc--CCcEEEEEecC-
Q 028808           45 AQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTG-VCSNQHVPSYKNNIDKFKAK--GIDSVICVAVN-  120 (203)
Q Consensus        45 APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp-~C~~ehl~~l~~~~~~f~~~--gv~~vi~IS~d-  120 (203)
                      .|+|+|.|.+|         +.+++++ ++||++|| +|--+.|| .|... +..+.++.+++.+.  .++ ++.||.| 
T Consensus        32 ~~~f~L~d~~G---------~~~~~~~-~~Gk~~lv-~F~yT~CpdvCp~~-l~~l~~~~~~l~~~~~~v~-~v~ISvDP   98 (174)
T PF02630_consen   32 VPDFTLTDQDG---------KTVTLDD-LKGKWVLV-FFGYTRCPDVCPTT-LANLSQLQKQLGEEGKDVQ-FVFISVDP   98 (174)
T ss_dssp             SST-EEEETTS---------SEEEGGG-GTTSEEEE-EEE-TTSSSHHHHH-HHHHHHHHHHHHHTTTTEE-EEEEESST
T ss_pred             CCCcEEEcCCC---------CEecHHH-hCCCeEEE-EEEEcCCCccCHHH-HHHHHHHHHHhhhccCceE-EEEEEeCC
Confidence            59999999986         8999999 59996555 55556665 79988 89999999999864  566 9999986 


Q ss_pred             ---CHHHHHHHHHHhCCCCceEEEeeC---CchHHHHcCCccccccc---cCC-CCc-ceEEEEEe-CCEEEEEEe
Q 028808          121 ---DPYVMNGWAEKLQAKDVIEFYGDF---DGSFHKSLDLGKDLSAA---LLG-PRS-ERWSAYVE-DGRIKALNV  184 (203)
Q Consensus       121 ---~~~~~~~~~~~~~l~~~fpllsD~---~~~v~~~yGv~~~~~~~---g~~-~~~-~r~tfIId-dG~I~~~~~  184 (203)
                         +|+.+++|+++++..  +..+.-.   -.+++++|++.......   +.. ... -...|||| +|+|+..+-
T Consensus        99 ~~DTp~~L~~Y~~~~~~~--~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~  172 (174)
T PF02630_consen   99 ERDTPEVLKKYAKKFGPD--FIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYN  172 (174)
T ss_dssp             TTC-HHHHHHHHHCHTTT--CEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEEC
T ss_pred             CCCCHHHHHHHHHhcCCC--cceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEc
Confidence               478899999999874  6555432   45678889987643211   000 000 12478999 999998863

In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.01  E-value=2.1e-09  Score=78.74  Aligned_cols=74  Identities=5%  Similarity=-0.016  Sum_probs=55.8

Q ss_pred             cCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHc
Q 028808           73 FKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSL  152 (203)
Q Consensus        73 ~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~y  152 (203)
                      ++|| +||+.||++||++|... +|.|++++++++  ++. ++.|..++                      ....++++|
T Consensus        16 ~~g~-~vlV~F~a~WC~~C~~~-~p~l~~la~~~~--~~~-~~~vd~~~----------------------~~~~l~~~~   68 (100)
T cd02999          16 NRED-YTAVLFYASWCPFSASF-RPHFNALSSMFP--QIR-HLAIEESS----------------------IKPSLLSRY   68 (100)
T ss_pred             cCCC-EEEEEEECCCCHHHHhH-hHHHHHHHHHhc--cCc-eEEEECCC----------------------CCHHHHHhc
Confidence            4887 68889999999999999 999999999885  466 77774431                      123677888


Q ss_pred             CCccccccccCCCCcceEEEEEeCCEEEEEEee
Q 028808          153 DLGKDLSAALLGPRSERWSAYVEDGRIKALNVE  185 (203)
Q Consensus       153 Gv~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~  185 (203)
                      ++..           .|+.+++++| .+..+.|
T Consensus        69 ~V~~-----------~PT~~lf~~g-~~~~~~G   89 (100)
T cd02999          69 GVVG-----------FPTILLFNST-PRVRYNG   89 (100)
T ss_pred             CCee-----------cCEEEEEcCC-ceeEecC
Confidence            8853           4778888877 5555544

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.00  E-value=2.7e-09  Score=79.48  Aligned_cols=89  Identities=11%  Similarity=0.156  Sum_probs=64.1

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      +|+ ++|+.||++||++|... .|.+.+++++++..++. +..|+.|.                       +..++++||
T Consensus        23 ~~~-~vlV~F~a~wC~~C~~~-~p~~~~l~~~~~~~~v~-~~~vd~d~-----------------------~~~l~~~~~   76 (111)
T cd02963          23 FKK-PYLIKITSDWCFSCIHI-EPVWKEVIQELEPLGVG-IATVNAGH-----------------------ERRLARKLG   76 (111)
T ss_pred             CCC-eEEEEEECCccHhHHHh-hHHHHHHHHHHHhcCce-EEEEeccc-----------------------cHHHHHHcC
Confidence            455 78889999999999998 89999999999876676 77776542                       245677787


Q ss_pred             CccccccccCCCCcceEEEEEeCCEEEEEEeecCCCCcccCCHHHHHhcC
Q 028808          154 LGKDLSAALLGPRSERWSAYVEDGRIKALNVEEAPSKMKVSGGDVILGQI  203 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~~~~~~~~~~a~~vL~~l  203 (203)
                      +.           +.|+++++++|+++....+..    +.....+.|+.|
T Consensus        77 V~-----------~~Pt~~i~~~g~~~~~~~G~~----~~~~l~~~i~~~  111 (111)
T cd02963          77 AH-----------SVPAIVGIINGQVTFYHDSSF----TKQHVVDFVRKL  111 (111)
T ss_pred             Cc-----------cCCEEEEEECCEEEEEecCCC----CHHHHHHHHhcC
Confidence            74           347677778999877765532    234445555543

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=98.98  E-value=1.4e-09  Score=85.71  Aligned_cols=107  Identities=14%  Similarity=0.237  Sum_probs=82.4

Q ss_pred             eeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcC--CcEEEEEecCCH-HHHHHHHHHhCCCC-ceEE
Q 028808           65 ATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKG--IDSVICVAVNDP-YVMNGWAEKLQAKD-VIEF  140 (203)
Q Consensus        65 ~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~g--v~~vi~IS~d~~-~~~~~~~~~~~l~~-~fpl  140 (203)
                      ..+-.++.++|| +|.+.|-+.|||+|+.= .|.+.+.|++.++.+  ++ ||-||.|.. +.+..+.+.++.+. -.|+
T Consensus        23 ~~~~~~~~l~gK-vV~lyFsA~wC~pCR~F-TP~Lk~fYe~l~~~~~~fE-VvfVS~D~~~~~~~~y~~~~~~~W~~iPf   99 (157)
T KOG2501|consen   23 TEVLASEALQGK-VVGLYFSAHWCPPCRDF-TPILKDFYEELKDNAAPFE-VVFVSSDRDEESLDEYMLEHHGDWLAIPF   99 (157)
T ss_pred             ccchHhHhhCCc-EEEEEEEEEECCchhhC-CchHHHHHHHHHhcCCceE-EEEEecCCCHHHHHHHHHhcCCCeEEecC
Confidence            456666557997 88888999999999987 899999999998753  66 999999865 66778888765431 3566


Q ss_pred             EeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEee
Q 028808          141 YGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVE  185 (203)
Q Consensus       141 lsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~  185 (203)
                      -.|...++.+.|++..           .|+..++. ||+++-....
T Consensus       100 ~d~~~~~l~~ky~v~~-----------iP~l~i~~~dG~~v~~d~r  134 (157)
T KOG2501|consen  100 GDDLIQKLSEKYEVKG-----------IPALVILKPDGTVVTEDAR  134 (157)
T ss_pred             CCHHHHHHHHhcccCc-----------CceeEEecCCCCEehHhhH
Confidence            6666788888998853           46677888 9988766543

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=98.96  E-value=2.6e-09  Score=89.40  Aligned_cols=138  Identities=14%  Similarity=0.192  Sum_probs=102.7

Q ss_pred             ccccCCCccccCCCceEEeccccccCCCCCCcee-eecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCC
Q 028808           33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFAT-TPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGI  111 (203)
Q Consensus        33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~-vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv  111 (203)
                      -...+|.+    |||.++.+.+|         +. .++-|+.+|++.+|++|-+--||+-... +.+|+++.++|.+. +
T Consensus        71 ~~a~~G~~----APns~vv~l~g---------~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~-l~~f~~l~~~f~d~-a  135 (237)
T PF00837_consen   71 KEAKLGGP----APNSPVVTLDG---------QRSCRILDFAKGNRPLVLNFGSCTCPPFMAK-LDAFKRLVEDFSDV-A  135 (237)
T ss_pred             cceeCCCC----CCCCceEeeCC---------CcceeHHHhccCCCCeEEEcccccchHHHHH-HHHHHHHHHHhhhh-h
Confidence            45778998    79999999986         45 8999977887788889998889999998 99999999999874 4


Q ss_pred             cEEEEEec------C------C---------H----HHHHHHHHHhCCCCceEEEeeC-CchHHHHcCCccccccccCCC
Q 028808          112 DSVICVAV------N------D---------P----YVMNGWAEKLQAKDVIEFYGDF-DGSFHKSLDLGKDLSAALLGP  165 (203)
Q Consensus       112 ~~vi~IS~------d------~---------~----~~~~~~~~~~~l~~~fpllsD~-~~~v~~~yGv~~~~~~~g~~~  165 (203)
                      + .+.|-.      |      +         .    ...+.+.++. .  .+|++.|. ++...++||..-+        
T Consensus       136 d-Fl~VYI~EAHpsDgW~~~~~~~~i~qh~sledR~~aA~~l~~~~-~--~~pi~vD~mdN~~~~~YgA~Pe--------  203 (237)
T PF00837_consen  136 D-FLIVYIEEAHPSDGWAFGNNPYEIPQHRSLEDRLRAAKLLKEEF-P--QCPIVVDTMDNNFNKAYGALPE--------  203 (237)
T ss_pred             h-eehhhHhhhCcCCCccCCCCceeecCCCCHHHHHHHHHHHHhhC-C--CCCEEEEccCCHHHHHhCCCcc--------
Confidence            4 444321      1      1         0    1122333333 3  49999998 9999999999642        


Q ss_pred             CcceEEEEEeCCEEEEEEeecCCCCcccCCHHHHHhc
Q 028808          166 RSERWSAYVEDGRIKALNVEEAPSKMKVSGGDVILGQ  202 (203)
Q Consensus       166 ~~~r~tfIIddG~I~~~~~~~~~~~~~~~~a~~vL~~  202 (203)
                         | .|||.||+|+|.-- +.|-++..++.++.|++
T Consensus       204 ---R-lyIi~~gkv~Y~Gg-~GP~~y~~~e~r~~L~~  235 (237)
T PF00837_consen  204 ---R-LYIIQDGKVVYKGG-PGPFGYSPEELREWLEK  235 (237)
T ss_pred             ---e-EEEEECCEEEEeCC-CCCCcCCHHHHHHHHHh
Confidence               3 78999999999853 33334667788888775

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=1.9e-08  Score=78.91  Aligned_cols=122  Identities=18%  Similarity=0.226  Sum_probs=85.6

Q ss_pred             CceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC-----
Q 028808           46 QDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN-----  120 (203)
Q Consensus        46 Pdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d-----  120 (203)
                      =||++.+.+|         ++++|++ ++|| |||+.--|+-|..-. | -..|+.+|++|+++|+. |++.-+|     
T Consensus         6 yd~~~~~~~G---------~~~~l~~-~~Gk-VlLIVNtASkCGfTp-Q-YegLe~Ly~ky~~~Gf~-VLgFPcNQF~~Q   71 (162)
T COG0386           6 YDFSVKDIDG---------EPVSLSD-YKGK-VLLIVNTASKCGFTP-Q-YEGLEALYKKYKDKGFE-VLGFPCNQFGGQ   71 (162)
T ss_pred             ccceeeccCC---------CCccHHH-hCCc-EEEEEEcccccCCcH-h-HHHHHHHHHHHhhCCcE-EEeccccccccC
Confidence            5899999886         8999999 5998 777777899998765 6 69999999999999999 9999765     


Q ss_pred             ---CHHHHHHHHHHh-CCCCceEEEeeC--Cch----HHHHcCCcccccc-ccCCCCcce-EEEEEe-CCEEEEEEee
Q 028808          121 ---DPYVMNGWAEKL-QAKDVIEFYGDF--DGS----FHKSLDLGKDLSA-ALLGPRSER-WSAYVE-DGRIKALNVE  185 (203)
Q Consensus       121 ---~~~~~~~~~~~~-~l~~~fpllsD~--~~~----v~~~yGv~~~~~~-~g~~~~~~r-~tfIId-dG~I~~~~~~  185 (203)
                         +.+..++|++.+ |++  ||+++-.  +++    +-+.+--..  +. .+....-|- +-|+|| ||+|+.++-.
T Consensus        72 EPg~~eEI~~fC~~~YgVt--Fp~f~Ki~VnG~~a~PLy~~L~~~~--~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p  145 (162)
T COG0386          72 EPGSDEEIAKFCQLNYGVT--FPMFSKIDVNGKNAHPLYKYLKEQK--PGKLGGKDIKWNFTKFLVDRDGNVVKRFSP  145 (162)
T ss_pred             CCCCHHHHHHHHHhccCce--eeeeeEEeecCCCCCcHHHHHHhcC--CCCccCCccceeeEEEEEcCCCcEEEeeCC
Confidence               345688888764 675  9998743  332    111111100  00 001111122 359999 9999999854

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=98.89  E-value=4.9e-09  Score=76.74  Aligned_cols=74  Identities=11%  Similarity=0.125  Sum_probs=54.2

Q ss_pred             CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCC
Q 028808           75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDL  154 (203)
Q Consensus        75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv  154 (203)
                      |+ +|++.||++||++|... +|.|+++++++++..+. ++.+..|.                        .+++++|++
T Consensus        17 ~~-~vvv~F~a~wC~~Ck~~-~p~l~~~~~~~~~~~~~-~~~vd~d~------------------------~~~~~~~~v   69 (102)
T cd02948          17 KG-LTVVDVYQEWCGPCKAV-VSLFKKIKNELGDDLLH-FATAEADT------------------------IDTLKRYRG   69 (102)
T ss_pred             CC-eEEEEEECCcCHhHHHH-hHHHHHHHHHcCCCcEE-EEEEeCCC------------------------HHHHHHcCC
Confidence            44 67889999999999999 89999999888755455 66666652                        234566776


Q ss_pred             ccccccccCCCCcceEEEEE-eCCEEEEEEeecC
Q 028808          155 GKDLSAALLGPRSERWSAYV-EDGRIKALNVEEA  187 (203)
Q Consensus       155 ~~~~~~~g~~~~~~r~tfII-ddG~I~~~~~~~~  187 (203)
                      ..           .| ||++ .+|+++....+.+
T Consensus        70 ~~-----------~P-t~~~~~~g~~~~~~~G~~   91 (102)
T cd02948          70 KC-----------EP-TFLFYKNGELVAVIRGAN   91 (102)
T ss_pred             Cc-----------Cc-EEEEEECCEEEEEEecCC
Confidence            43           35 4555 5999999988753

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=98.85  E-value=2.6e-09  Score=80.63  Aligned_cols=88  Identities=9%  Similarity=0.089  Sum_probs=60.4

Q ss_pred             CC-CeEEEEEeeCCCCCCCCccchhhHH---HhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHH
Q 028808           74 KG-KKVVIFGLPGAYTGVCSNQHVPSYK---NNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFH  149 (203)
Q Consensus        74 ~g-k~vVL~~f~~~~cp~C~~ehl~~l~---~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~  149 (203)
                      +| | +|+++||++||++|... .+.+.   ++.+.+++ ++. ++.|+.+....+..|      +    --...+.+++
T Consensus        12 ~~~k-~vlv~f~a~wC~~C~~~-~~~~~~~~~~~~~~~~-~~~-~~~i~~d~~~~~~~~------~----~~~~~~~~l~   77 (125)
T cd02951          12 DGKK-PLLLLFSQPGCPYCDKL-KRDYLNDPAVQAYIRA-HFV-VVYINIDGDKEVTDF------D----GEALSEKELA   77 (125)
T ss_pred             cCCC-cEEEEEeCCCCHHHHHH-HHHhcCcHHHHHHHHh-heE-EEEEEccCCceeecc------C----CCCccHHHHH
Confidence            45 5 67888999999999988 67764   34445543 576 888888754322221      1    1123567889


Q ss_pred             HHcCCccccccccCCCCcceEEEEEe-C-CEEEEEEeec
Q 028808          150 KSLDLGKDLSAALLGPRSERWSAYVE-D-GRIKALNVEE  186 (203)
Q Consensus       150 ~~yGv~~~~~~~g~~~~~~r~tfIId-d-G~I~~~~~~~  186 (203)
                      ++|++..           .|++++++ + |+++....+.
T Consensus        78 ~~~~v~~-----------~Pt~~~~~~~gg~~~~~~~G~  105 (125)
T cd02951          78 RKYRVRF-----------TPTVIFLDPEGGKEIARLPGY  105 (125)
T ss_pred             HHcCCcc-----------ccEEEEEcCCCCceeEEecCC
Confidence            9998853           57889999 8 8999888764

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=98.83  E-value=1.5e-08  Score=72.67  Aligned_cols=74  Identities=5%  Similarity=-0.003  Sum_probs=55.3

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      +|+ ++|+.||++||++|... .|.++++++++.. .+. ++.|..+                       ....++++|+
T Consensus        11 ~~~-~vlv~f~a~wC~~C~~~-~~~~~~~~~~~~~-~~~-~~~vd~~-----------------------~~~~l~~~~~   63 (96)
T cd02956          11 TQV-PVVVDFWAPRSPPSKEL-LPLLERLAEEYQG-QFV-LAKVNCD-----------------------AQPQIAQQFG   63 (96)
T ss_pred             CCC-eEEEEEECCCChHHHHH-HHHHHHHHHHhCC-cEE-EEEEecc-----------------------CCHHHHHHcC
Confidence            355 67889999999999999 8999999988864 244 5666543                       3346777887


Q ss_pred             CccccccccCCCCcceEEEEEeCCEEEEEEee
Q 028808          154 LGKDLSAALLGPRSERWSAYVEDGRIKALNVE  185 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~  185 (203)
                      +.           ..|+++++++|+++....+
T Consensus        64 i~-----------~~Pt~~~~~~g~~~~~~~g   84 (96)
T cd02956          64 VQ-----------ALPTVYLFAAGQPVDGFQG   84 (96)
T ss_pred             CC-----------CCCEEEEEeCCEEeeeecC
Confidence            74           2477788889998877654

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]

Probab=98.71  E-value=2.9e-07  Score=76.16  Aligned_cols=126  Identities=17%  Similarity=0.145  Sum_probs=87.1

Q ss_pred             ceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCC-CCCccchhhHHHhHHHHH---HcCCcEEEEEecC--
Q 028808           47 DVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTG-VCSNQHVPSYKNNIDKFK---AKGIDSVICVAVN--  120 (203)
Q Consensus        47 df~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp-~C~~ehl~~l~~~~~~f~---~~gv~~vi~IS~d--  120 (203)
                      +|+|.+.+|         +.+++.++ +||++ |++|--+.|| +|..+ +..+.++.+++.   ...++ ++.||+|  
T Consensus        49 ~f~l~d~~G---------~~~~~~~l-~Gk~~-lv~FgyT~CpdVCP~~-l~~l~~~~~~l~~~~~~~v~-vv~itvDPe  115 (207)
T COG1999          49 DFELTDQDG---------KPFTLKDL-KGKPS-LVFFGYTHCPDVCPTT-LAELKALLKKLGEGEGDDVQ-VVFITVDPE  115 (207)
T ss_pred             ceeeecCCC---------CEeecccc-CCCEE-EEEeecCCCCccChHH-HHHHHHHHHHhccccCCCEE-EEEEEECCC
Confidence            799999886         89999995 99954 5556667787 89999 999999999987   34555 8889986  


Q ss_pred             --CHHHHHHHHHHhCCCCceEEEeeC---CchHHHHcCCccccccccC---CCCcc-eEEEEEe-CCEEEEEEeec
Q 028808          121 --DPYVMNGWAEKLQAKDVIEFYGDF---DGSFHKSLDLGKDLSAALL---GPRSE-RWSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       121 --~~~~~~~~~~~~~l~~~fpllsD~---~~~v~~~yGv~~~~~~~g~---~~~~~-r~tfIId-dG~I~~~~~~~  186 (203)
                        +++.+++|.+ .+...++--+...   ..+++++|++.........   ..... -..|+|| +|++....-..
T Consensus       116 rDtp~~lk~Y~~-~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~  190 (207)
T COG1999         116 RDTPEVLKKYAE-LNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYG  190 (207)
T ss_pred             CCCHHHHHHHhc-ccCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCC
Confidence              4678888988 3332135555543   5578999999852111000   00111 2357789 99999887543

>PRK09381 trxA thioredoxin; Provisional

Probab=98.70  E-value=6.3e-08  Score=71.14  Aligned_cols=73  Identities=11%  Similarity=0.237  Sum_probs=55.3

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK  156 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~  156 (203)
                      +.+++.||++|||+|... .|.|+++++++.. ++. ++.|..+.                       ...+++.|++. 
T Consensus        22 ~~vvv~f~~~~C~~C~~~-~p~~~~l~~~~~~-~~~-~~~vd~~~-----------------------~~~~~~~~~v~-   74 (109)
T PRK09381         22 GAILVDFWAEWCGPCKMI-APILDEIADEYQG-KLT-VAKLNIDQ-----------------------NPGTAPKYGIR-   74 (109)
T ss_pred             CeEEEEEECCCCHHHHHH-hHHHHHHHHHhCC-CcE-EEEEECCC-----------------------ChhHHHhCCCC-
Confidence            367889999999999999 8999999999875 366 77776543                       23356677764 


Q ss_pred             ccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          157 DLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       157 ~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                                ..|+.+++++|++++...+.
T Consensus        75 ----------~~Pt~~~~~~G~~~~~~~G~   94 (109)
T PRK09381         75 ----------GIPTLLLFKNGEVAATKVGA   94 (109)
T ss_pred             ----------cCCEEEEEeCCeEEEEecCC
Confidence                      34666667799999887654

>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like

Probab=98.69  E-value=2.3e-07  Score=76.41  Aligned_cols=138  Identities=12%  Similarity=0.235  Sum_probs=102.3

Q ss_pred             cccccccccccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCe-EEEEEee-----CCCCCCCCccchh
Q 028808           24 RIPTSSRAYASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKK-VVIFGLP-----GAYTGVCSNQHVP   97 (203)
Q Consensus        24 ~~~~~~~~~~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~-vVL~~f~-----~~~cp~C~~ehl~   97 (203)
                      .++...+.+.++++.+       +..+...+|          +++|.|||.|+. .|++.|-     ..-||.|+.- +-
T Consensus        32 alaa~RR~LP~v~v~~-------~Y~F~g~~G----------~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~-~D   93 (211)
T PF05988_consen   32 ALAAERRRLPMVEVDK-------DYVFDGPDG----------PVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFW-AD   93 (211)
T ss_pred             HHHHHHhhCCCccCCC-------CeEEeCCCC----------cccHHHHcCCCceEEEEeeccCCCCCCCCCchhhh-Hh
Confidence            4555566666655543       455544442          699999999985 4444442     6789999998 88


Q ss_pred             hHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEeCC
Q 028808           98 SYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDG  177 (203)
Q Consensus        98 ~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIIddG  177 (203)
                      .+.....-+.++++. +++||..+.+.+.+|+++.|..  ||.+|..+..+...|++..+.... +   ..=++|+=|+|
T Consensus        94 ~~~g~l~hL~~rd~t-fa~vSraP~~~i~afk~rmGW~--~pw~Ss~gs~Fn~D~~~~~~~~~~-~---~g~svF~Rdg~  166 (211)
T PF05988_consen   94 HIDGALRHLHARDTT-FAVVSRAPLEKIEAFKRRMGWT--FPWYSSYGSDFNYDFGVSFDEGGE-M---PGLSVFLRDGG  166 (211)
T ss_pred             hhhhhHHHHHhCCce-EEEEeCCCHHHHHHHHHhcCCC--ceEEEcCCCcccccccceeccCCC-c---eeEEEEEEcCC
Confidence            887778888999999 9999999999999999999997  999999999999999986542211 1   11134555689


Q ss_pred             EEEEEEeec
Q 028808          178 RIKALNVEE  186 (203)
Q Consensus       178 ~I~~~~~~~  186 (203)
                      +|.+.+-..
T Consensus       167 ~VfhTyst~  175 (211)
T PF05988_consen  167 RVFHTYSTY  175 (211)
T ss_pred             EEEEEeecC
Confidence            998887654

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=98.66  E-value=7.2e-08  Score=69.80  Aligned_cols=75  Identities=15%  Similarity=0.165  Sum_probs=51.5

Q ss_pred             cccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHH
Q 028808           71 DIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHK  150 (203)
Q Consensus        71 dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~  150 (203)
                      +..+|+  +|+.||++||++|... .|.|++++++++..++. +..|..                       |.+..+++
T Consensus        13 ~~~~~~--~lv~f~a~wC~~C~~~-~p~~~~l~~~~~~~~v~-~~~vd~-----------------------~~~~~~~~   65 (101)
T cd02994          13 LVLEGE--WMIEFYAPWCPACQQL-QPEWEEFADWSDDLGIN-VAKVDV-----------------------TQEPGLSG   65 (101)
T ss_pred             HHhCCC--EEEEEECCCCHHHHHH-hHHHHHHHHhhccCCeE-EEEEEc-----------------------cCCHhHHH
Confidence            334666  4688999999999999 89999998877655565 555543                       23345677


Q ss_pred             HcCCccccccccCCCCcceEEEEEeCCEEEEEEe
Q 028808          151 SLDLGKDLSAALLGPRSERWSAYVEDGRIKALNV  184 (203)
Q Consensus       151 ~yGv~~~~~~~g~~~~~~r~tfIIddG~I~~~~~  184 (203)
                      +|++..           .|+.+++.+|++ ....
T Consensus        66 ~~~i~~-----------~Pt~~~~~~g~~-~~~~   87 (101)
T cd02994          66 RFFVTA-----------LPTIYHAKDGVF-RRYQ   87 (101)
T ss_pred             HcCCcc-----------cCEEEEeCCCCE-EEec
Confidence            787743           465666558885 4443

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>PRK10996 thioredoxin 2; Provisional

Probab=98.65  E-value=6e-08  Score=75.15  Aligned_cols=86  Identities=10%  Similarity=0.172  Sum_probs=58.8

Q ss_pred             CeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCc
Q 028808           76 KKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLG  155 (203)
Q Consensus        76 k~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~  155 (203)
                      ++.|++.||++||++|... .+.|.++++++.+ ++. ++.|..+                       .+..++++||+.
T Consensus        52 ~k~vvv~F~a~wC~~C~~~-~~~l~~l~~~~~~-~v~-~~~vd~~-----------------------~~~~l~~~~~V~  105 (139)
T PRK10996         52 DLPVVIDFWAPWCGPCRNF-APIFEDVAAERSG-KVR-FVKVNTE-----------------------AERELSARFRIR  105 (139)
T ss_pred             CCeEEEEEECCCCHHHHHH-HHHHHHHHHHhCC-CeE-EEEEeCC-----------------------CCHHHHHhcCCC
Confidence            3478889999999999998 8999998887754 355 6666443                       234677888885


Q ss_pred             cccccccCCCCcceEEEEEeCCEEEEEEeecCCCCcccCCHHHHHhc
Q 028808          156 KDLSAALLGPRSERWSAYVEDGRIKALNVEEAPSKMKVSGGDVILGQ  202 (203)
Q Consensus       156 ~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~~~~~~~~~~a~~vL~~  202 (203)
                      .           .|+.+++++|+++....+.    .+.+..++.|++
T Consensus       106 ~-----------~Ptlii~~~G~~v~~~~G~----~~~e~l~~~l~~  137 (139)
T PRK10996        106 S-----------IPTIMIFKNGQVVDMLNGA----VPKAPFDSWLNE  137 (139)
T ss_pred             c-----------cCEEEEEECCEEEEEEcCC----CCHHHHHHHHHH
Confidence            3           3655555699998887653    223444555443

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=98.61  E-value=1.7e-07  Score=70.59  Aligned_cols=73  Identities=12%  Similarity=0.171  Sum_probs=54.4

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK  156 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~  156 (203)
                      .+||+.||++||++|..- .|.|.++.+++.+. +. ++-|..|.                       ..++++.||+..
T Consensus        15 ~~vVV~F~A~WCgpCk~m-~P~le~la~~~~~~-v~-f~kVDvD~-----------------------~~~la~~~~V~~   68 (114)
T cd02954          15 KVVVIRFGRDWDPVCMQM-DEVLAKIAEDVSNF-AV-IYLVDIDE-----------------------VPDFNKMYELYD   68 (114)
T ss_pred             CEEEEEEECCCChhHHHH-HHHHHHHHHHccCc-eE-EEEEECCC-----------------------CHHHHHHcCCCC
Confidence            478889999999999976 68899988887643 34 55555543                       456777888753


Q ss_pred             ccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          157 DLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       157 ~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                                 .|+.+++.||+++.+..+.
T Consensus        69 -----------iPTf~~fk~G~~v~~~~G~   87 (114)
T cd02954          69 -----------PPTVMFFFRNKHMKIDLGT   87 (114)
T ss_pred             -----------CCEEEEEECCEEEEEEcCC
Confidence                       4656666799999999875

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=98.60  E-value=1.6e-07  Score=67.76  Aligned_cols=88  Identities=16%  Similarity=0.245  Sum_probs=56.9

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcC-CcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHc
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKG-IDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSL  152 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~g-v~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~y  152 (203)
                      +++ .+++.||++||++|... .|.++++.+++++.+ +. ++.+..+.                     |.+..++++|
T Consensus        16 ~~~-~~~v~f~a~wC~~C~~~-~~~~~~~~~~~~~~~~~~-~~~id~~~---------------------~~~~~~~~~~   71 (104)
T cd02997          16 KEK-HVLVMFYAPWCGHCKKM-KPEFTKAATELKEDGKGV-LAAVDCTK---------------------PEHDALKEEY   71 (104)
T ss_pred             hCC-CEEEEEECCCCHHHHHh-CHHHHHHHHHHhhCCceE-EEEEECCC---------------------CccHHHHHhC
Confidence            344 67889999999999999 899999999887533 33 44444332                     1245677788


Q ss_pred             CCccccccccCCCCcceEEEEEeCCEEEEEEeecCCCCcccCCHHHHHhcC
Q 028808          153 DLGKDLSAALLGPRSERWSAYVEDGRIKALNVEEAPSKMKVSGGDVILGQI  203 (203)
Q Consensus       153 Gv~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~~~~~~~~~~a~~vL~~l  203 (203)
                      |+..           .|+.++..+|++++...+.       ...+.+++.|
T Consensus        72 ~i~~-----------~Pt~~~~~~g~~~~~~~g~-------~~~~~l~~~l  104 (104)
T cd02997          72 NVKG-----------FPTFKYFENGKFVEKYEGE-------RTAEDIIEFM  104 (104)
T ss_pred             CCcc-----------ccEEEEEeCCCeeEEeCCC-------CCHHHHHhhC
Confidence            7742           3544444488877655432       2455555543

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=98.58  E-value=2.3e-07  Score=66.99  Aligned_cols=74  Identities=11%  Similarity=0.254  Sum_probs=54.3

Q ss_pred             CeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCc
Q 028808           76 KKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLG  155 (203)
Q Consensus        76 k~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~  155 (203)
                      .++|++.|+++||+.|... .+.++++.+++.+ ++. ++.|..|.                       +.++++.||+.
T Consensus        13 ~~~vlv~f~a~~C~~C~~~-~~~l~~l~~~~~~-~v~-~~~id~d~-----------------------~~~l~~~~~v~   66 (97)
T cd02949          13 DRLILVLYTSPTCGPCRTL-KPILNKVIDEFDG-AVH-FVEIDIDE-----------------------DQEIAEAAGIM   66 (97)
T ss_pred             CCeEEEEEECCCChhHHHH-HHHHHHHHHHhCC-ceE-EEEEECCC-----------------------CHHHHHHCCCe
Confidence            3478889999999999998 8999998888764 355 55555432                       34567777774


Q ss_pred             cccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          156 KDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       156 ~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      .           .|+.+|+++|+++....+.
T Consensus        67 ~-----------vPt~~i~~~g~~v~~~~g~   86 (97)
T cd02949          67 G-----------TPTVQFFKDKELVKEISGV   86 (97)
T ss_pred             e-----------ccEEEEEECCeEEEEEeCC
Confidence            2           4667777899998877653

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=1e-07  Score=74.68  Aligned_cols=75  Identities=13%  Similarity=0.223  Sum_probs=58.3

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK  156 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~  156 (203)
                      ..||+.|||.||.+|..= .|.++++..+++.+ ++ ++-|.+                       |.+.+++..|++. 
T Consensus        62 ~PVlVdF~A~WCgPCk~l-~P~l~~~~~~~~g~-~k-~~kvdt-----------------------D~~~ela~~Y~I~-  114 (150)
T KOG0910|consen   62 VPVLVDFHAEWCGPCKML-GPILEELVSEYAGK-FK-LYKVDT-----------------------DEHPELAEDYEIS-  114 (150)
T ss_pred             CCEEEEEecCcCccHhHh-hHHHHHHHHhhcCe-EE-EEEEcc-----------------------ccccchHhhccee-
Confidence            468889999999999998 79999998888543 44 444433                       5566788888885 


Q ss_pred             ccccccCCCCcceEEEEEeCCEEEEEEeecCC
Q 028808          157 DLSAALLGPRSERWSAYVEDGRIKALNVEEAP  188 (203)
Q Consensus       157 ~~~~~g~~~~~~r~tfIIddG~I~~~~~~~~~  188 (203)
                                +.|++++++||..+...++.-+
T Consensus       115 ----------avPtvlvfknGe~~d~~vG~~~  136 (150)
T KOG0910|consen  115 ----------AVPTVLVFKNGEKVDRFVGAVP  136 (150)
T ss_pred             ----------eeeEEEEEECCEEeeeecccCC
Confidence                      4577888899999988887644

>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme

Probab=98.57  E-value=6.5e-07  Score=66.77  Aligned_cols=84  Identities=13%  Similarity=0.188  Sum_probs=67.0

Q ss_pred             HHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcccccc------------------
Q 028808           99 YKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSA------------------  160 (203)
Q Consensus        99 l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~------------------  160 (203)
                      |.+..+++++.|++ +|+|+..++...++|++..+.+  +|+++|+++++-+++|+......                  
T Consensus         2 L~~~~~~l~~~gv~-lv~I~~g~~~~~~~f~~~~~~p--~~ly~D~~~~lY~~lg~~~~~~~~~~~~~~~~~~~~~~~~~   78 (115)
T PF13911_consen    2 LSRRKPELEAAGVK-LVVIGCGSPEGIEKFCELTGFP--FPLYVDPERKLYKALGLKRGLKWSLLPPALWSGLSNIVQSA   78 (115)
T ss_pred             hhHhHHHHHHcCCe-EEEEEcCCHHHHHHHHhccCCC--CcEEEeCcHHHHHHhCCccccccCCCchHHHHHHHHHHHHH
Confidence            56778899999999 9999999997799999999997  99999999999999998752110                  


Q ss_pred             --ccCC-------CCcceEEEEEe-CCEEEEEEee
Q 028808          161 --ALLG-------PRSERWSAYVE-DGRIKALNVE  185 (203)
Q Consensus       161 --~g~~-------~~~~r~tfIId-dG~I~~~~~~  185 (203)
                        .++.       ..-...+||+| +|+|+|.|..
T Consensus        79 ~~~~~~~~~~~g~~~q~GG~fv~d~~g~v~~~hr~  113 (115)
T PF13911_consen   79 KNGGIPGNKDQGDGWQLGGTFVFDPGGKVLYEHRD  113 (115)
T ss_pred             HHcCCCCcccCCCceecCeEEEEcCCCeEEEEEec
Confidence              0110       01124689999 8999999975

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=98.57  E-value=2.7e-07  Score=72.86  Aligned_cols=81  Identities=7%  Similarity=0.052  Sum_probs=57.1

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK  156 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~  156 (203)
                      .++|+.||++|||+|... .|.|+++.+++.+.++. ++.|..|..                       .+++++|++..
T Consensus        48 ~~vvV~Fya~wC~~Ck~l-~p~l~~la~~~~~~~v~-f~~VDvd~~-----------------------~~la~~~~V~~  102 (152)
T cd02962          48 VTWLVEFFTTWSPECVNF-APVFAELSLKYNNNNLK-FGKIDIGRF-----------------------PNVAEKFRVST  102 (152)
T ss_pred             CEEEEEEECCCCHHHHHH-HHHHHHHHHHcccCCeE-EEEEECCCC-----------------------HHHHHHcCcee
Confidence            478889999999999999 89999999998766677 888877552                       23344444432


Q ss_pred             ccccccCCCCcceEEEEEeCCEEEEEEeecC
Q 028808          157 DLSAALLGPRSERWSAYVEDGRIKALNVEEA  187 (203)
Q Consensus       157 ~~~~~g~~~~~~r~tfIIddG~I~~~~~~~~  187 (203)
                      .     .+.+..|+.++..+|+.+.+..+.+
T Consensus       103 ~-----~~v~~~PT~ilf~~Gk~v~r~~G~~  128 (152)
T cd02962         103 S-----PLSKQLPTIILFQGGKEVARRPYYN  128 (152)
T ss_pred             c-----CCcCCCCEEEEEECCEEEEEEeccc
Confidence            1     0112356556667999999888743

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=98.56  E-value=2.1e-08  Score=73.74  Aligned_cols=104  Identities=13%  Similarity=0.133  Sum_probs=61.9

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHH---HHHHcCCcEEEEEecCCHH-HHHHHHHHhCCCCceEEEeeCCchHH
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNID---KFKAKGIDSVICVAVNDPY-VMNGWAEKLQAKDVIEFYGDFDGSFH  149 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~---~f~~~gv~~vi~IS~d~~~-~~~~~~~~~~l~~~fpllsD~~~~v~  149 (203)
                      +||+ +|+.|+..|||.|... .+.+.+..+   ++ +.++. ++.++.++.. ...+|.+..+.+  .+.  ..+.+++
T Consensus         4 ~~k~-~v~~F~~~~C~~C~~~-~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~l~   75 (112)
T PF13098_consen    4 NGKP-IVVVFTDPWCPYCKKL-EKELFPDNDVARYL-KDDFQ-VIFVNIDDSRDESEAVLDFDGQK--NVR--LSNKELA   75 (112)
T ss_dssp             TSSE-EEEEEE-TT-HHHHHH-HHHHHHHHHHHCEE-HCECE-EEECESHSHHHHHHHHHSHTCHS--SCH--HHHHHHH
T ss_pred             CCCE-EEEEEECCCCHHHHHH-HHHHHHHHHHHHHh-hcCeE-EEEEecCCcccccccccccccch--hhh--HHHHHHH
Confidence            4664 5566899999999976 466654322   22 22576 8888887764 344566554432  111  2345799


Q ss_pred             HHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCCcccCCHHHHHhcC
Q 028808          150 KSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSKMKVSGGDVILGQI  203 (203)
Q Consensus       150 ~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~~~~~~a~~vL~~l  203 (203)
                      +.||+..           .|+.+++| ||+++++..|       ..+++++++.|
T Consensus        76 ~~~~v~g-----------tPt~~~~d~~G~~v~~~~G-------~~~~~~l~~~L  112 (112)
T PF13098_consen   76 QRYGVNG-----------TPTIVFLDKDGKIVYRIPG-------YLSPEELLKML  112 (112)
T ss_dssp             HHTT--S-----------SSEEEECTTTSCEEEEEES-------S--HHHHHHHH
T ss_pred             HHcCCCc-----------cCEEEEEcCCCCEEEEecC-------CCCHHHHHhhC
Confidence            9999864           36778889 9999988754       24566666653

...

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=98.56  E-value=1.3e-07  Score=68.96  Aligned_cols=78  Identities=8%  Similarity=-0.020  Sum_probs=52.6

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhH---HHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHH
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSY---KNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHK  150 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l---~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~  150 (203)
                      .|| +||+.||++||++|... .+.+   .++.+++++ ++. ++.|..+...                   +...++++
T Consensus        10 ~~k-~vlv~f~a~wC~~C~~~-~~~~~~~~~~~~~~~~-~~~-~~~vd~~~~~-------------------~~~~~~~~   66 (104)
T cd02953          10 QGK-PVFVDFTADWCVTCKVN-EKVVFSDPEVQAALKK-DVV-LLRADWTKND-------------------PEITALLK   66 (104)
T ss_pred             cCC-eEEEEEEcchhHHHHHH-HHHhcCCHHHHHHHhC-CeE-EEEEecCCCC-------------------HHHHHHHH
Confidence            455 67778999999999987 6666   456666765 676 7777654311                   00135666


Q ss_pred             HcCCccccccccCCCCcceEEEEEe--CCEEEEEEee
Q 028808          151 SLDLGKDLSAALLGPRSERWSAYVE--DGRIKALNVE  185 (203)
Q Consensus       151 ~yGv~~~~~~~g~~~~~~r~tfIId--dG~I~~~~~~  185 (203)
                      +||+.           +.|++++++  +|+++++..+
T Consensus        67 ~~~i~-----------~~Pti~~~~~~~g~~~~~~~G   92 (104)
T cd02953          67 RFGVF-----------GPPTYLFYGPGGEPEPLRLPG   92 (104)
T ss_pred             HcCCC-----------CCCEEEEECCCCCCCCccccc
Confidence            67664           357788887  7998877654

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=98.56  E-value=3.6e-07  Score=65.75  Aligned_cols=72  Identities=11%  Similarity=0.176  Sum_probs=52.0

Q ss_pred             EEEEeeCCCCCCCCccchhhHHHhHHHHHH--cCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808           79 VIFGLPGAYTGVCSNQHVPSYKNNIDKFKA--KGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK  156 (203)
Q Consensus        79 VL~~f~~~~cp~C~~ehl~~l~~~~~~f~~--~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~  156 (203)
                      +++.||++||++|... +|.|++++++++.  ..+. ++.|..+                       .+..+++.|++..
T Consensus        19 ~lv~f~a~wC~~C~~~-~p~~~~~~~~~~~~~~~~~-~~~vd~~-----------------------~~~~~~~~~~v~~   73 (102)
T cd03005          19 HFVKFFAPWCGHCKRL-APTWEQLAKKFNNENPSVK-IAKVDCT-----------------------QHRELCSEFQVRG   73 (102)
T ss_pred             EEEEEECCCCHHHHHh-CHHHHHHHHHHhccCCcEE-EEEEECC-----------------------CChhhHhhcCCCc
Confidence            7788999999999999 8999999999976  2344 5555432                       2346677787742


Q ss_pred             ccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          157 DLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       157 ~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                                 .|+.+++.+|+++..+.+.
T Consensus        74 -----------~Pt~~~~~~g~~~~~~~G~   92 (102)
T cd03005          74 -----------YPTLLLFKDGEKVDKYKGT   92 (102)
T ss_pred             -----------CCEEEEEeCCCeeeEeeCC
Confidence                       4666667788877666653

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>PTZ00051 thioredoxin; Provisional

Probab=98.56  E-value=1.7e-07  Score=67.25  Aligned_cols=74  Identities=12%  Similarity=0.210  Sum_probs=52.9

Q ss_pred             CeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCc
Q 028808           76 KKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLG  155 (203)
Q Consensus        76 k~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~  155 (203)
                      ++.++++||++||++|... .+.|.++++++.  ++. ++.|..+                       ....++++|++.
T Consensus        18 ~~~vli~f~~~~C~~C~~~-~~~l~~l~~~~~--~~~-~~~vd~~-----------------------~~~~~~~~~~v~   70 (98)
T PTZ00051         18 NELVIVDFYAEWCGPCKRI-APFYEECSKEYT--KMV-FVKVDVD-----------------------ELSEVAEKENIT   70 (98)
T ss_pred             CCeEEEEEECCCCHHHHHH-hHHHHHHHHHcC--CcE-EEEEECc-----------------------chHHHHHHCCCc
Confidence            3478889999999999998 899998887654  355 6666443                       234577778774


Q ss_pred             cccccccCCCCcceEEEEEeCCEEEEEEeecC
Q 028808          156 KDLSAALLGPRSERWSAYVEDGRIKALNVEEA  187 (203)
Q Consensus       156 ~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~~  187 (203)
                      .           .|+.+++.+|+++....+..
T Consensus        71 ~-----------~Pt~~~~~~g~~~~~~~G~~   91 (98)
T PTZ00051         71 S-----------MPTFKVFKNGSVVDTLLGAN   91 (98)
T ss_pred             e-----------eeEEEEEeCCeEEEEEeCCC
Confidence            3           35444445999999988754

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=98.53  E-value=4e-07  Score=66.20  Aligned_cols=83  Identities=13%  Similarity=0.095  Sum_probs=57.2

Q ss_pred             EEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccc
Q 028808           78 VVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKD  157 (203)
Q Consensus        78 vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~  157 (203)
                      ++++.||++||++|... .|.++++.++++. ++. +..|..+                       .+.++++.||+.. 
T Consensus        21 ~v~v~f~a~wC~~C~~~-~p~~~~~~~~~~~-~~~-~~~vd~~-----------------------~~~~~~~~~~i~~-   73 (104)
T cd03004          21 PWLVDFYAPWCGPCQAL-LPELRKAARALKG-KVK-VGSVDCQ-----------------------KYESLCQQANIRA-   73 (104)
T ss_pred             eEEEEEECCCCHHHHHH-HHHHHHHHHHhcC-CcE-EEEEECC-----------------------chHHHHHHcCCCc-
Confidence            78889999999999998 8999999998853 355 6666544                       2345667777742 


Q ss_pred             cccccCCCCcceEEEEEeCC-EEEEEEeecCCCCcccCCHHHHHhcC
Q 028808          158 LSAALLGPRSERWSAYVEDG-RIKALNVEEAPSKMKVSGGDVILGQI  203 (203)
Q Consensus       158 ~~~~g~~~~~~r~tfIIddG-~I~~~~~~~~~~~~~~~~a~~vL~~l  203 (203)
                                .|+.+++++| +.++.+.+.      .++++++.++|
T Consensus        74 ----------~Pt~~~~~~g~~~~~~~~G~------~~~~~~l~~~i  104 (104)
T cd03004          74 ----------YPTIRLYPGNASKYHSYNGW------HRDADSILEFI  104 (104)
T ss_pred             ----------ccEEEEEcCCCCCceEccCC------CCCHHHHHhhC
Confidence                      4666677754 777666542      12366666553

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=98.53  E-value=3.4e-07  Score=66.87  Aligned_cols=67  Identities=10%  Similarity=0.171  Sum_probs=49.7

Q ss_pred             CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCC
Q 028808           75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDL  154 (203)
Q Consensus        75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv  154 (203)
                      |+ .+|+.||++||++|... .|.|+++++++.. .+. ++.|+.+..                     .+.++++.|++
T Consensus        18 ~~-~~lv~f~a~wC~~C~~~-~~~~~~~a~~~~~-~~~-~~~v~~~~~---------------------~~~~~~~~~~i   72 (109)
T cd03002          18 NY-TTLVEFYAPWCGHCKNL-KPEYAKAAKELDG-LVQ-VAAVDCDED---------------------KNKPLCGKYGV   72 (109)
T ss_pred             CC-eEEEEEECCCCHHHHhh-ChHHHHHHHHhcC-Cce-EEEEecCcc---------------------ccHHHHHHcCC
Confidence            44 57888999999999998 8999999988864 366 888877642                     23467777777


Q ss_pred             ccccccccCCCCcceEEEEEeCC
Q 028808          155 GKDLSAALLGPRSERWSAYVEDG  177 (203)
Q Consensus       155 ~~~~~~~g~~~~~~r~tfIIddG  177 (203)
                      ..           .|+.+++++|
T Consensus        73 ~~-----------~Pt~~~~~~~   84 (109)
T cd03002          73 QG-----------FPTLKVFRPP   84 (109)
T ss_pred             Cc-----------CCEEEEEeCC
Confidence            42           4667777744

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=1.5e-06  Score=68.98  Aligned_cols=124  Identities=18%  Similarity=0.308  Sum_probs=83.4

Q ss_pred             CceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC----
Q 028808           46 QDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND----  121 (203)
Q Consensus        46 Pdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~----  121 (203)
                      =+|+..|.+|         +.++|+. ++|| |||+.-=|+.|..-..+ -.+|+.++++|+++|+. |++.-+|.    
T Consensus        15 ydf~~~d~~G---------~~v~l~~-yrGk-V~LiVNVAS~Cg~T~~~-Y~~l~~L~~ky~~~Gl~-ILaFPCNQFg~Q   81 (171)
T KOG1651|consen   15 YDFSAKDLDG---------EYVSLSQ-YRGK-VVLIVNVASQCGLTESQ-YTELNELYEKYKDQGLE-ILAFPCNQFGNQ   81 (171)
T ss_pred             eeeEEecCCC---------CCccHHH-hCCe-EEEEEEcccccccchhc-chhHHHHHHHHhhCCeE-EEEeccccccCc
Confidence            5899999986         8999999 5998 67766779999998877 68999999999999998 99987652    


Q ss_pred             -H---HHHHHHH-HHhCCCCceEEEe--eCCchHHH-HcCCcccccccc-CCCCcce---EEEEEe-CCEEEEEEeec
Q 028808          122 -P---YVMNGWA-EKLQAKDVIEFYG--DFDGSFHK-SLDLGKDLSAAL-LGPRSER---WSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       122 -~---~~~~~~~-~~~~l~~~fplls--D~~~~v~~-~yGv~~~~~~~g-~~~~~~r---~tfIId-dG~I~~~~~~~  186 (203)
                       |   .....|+ .+.+..  ||++.  |-++.-+. -|....... .| ++. .+.   +-|+|| ||+|+.++-..
T Consensus        82 Ep~~n~Ei~~f~~~r~~~~--f~if~KidVNG~~~~PlykfLK~~~-~~~lg~-~IkWNF~KFLVd~~G~vv~Ry~pt  155 (171)
T KOG1651|consen   82 EPGSNEEILNFVKVRYGAE--FPIFQKIDVNGDNADPLYKFLKKVK-GGPLGD-DIKWNFTKFLVDKDGHVVKRFSPT  155 (171)
T ss_pred             CCCCcHHHHHHHHhccCCC--CccEeEEecCCCCCchHHHHHhhcC-CCcccc-cceeeeEEEeECCCCcEEEeeCCC
Confidence             2   3445565 455554  87775  33333111 111111100 01 111 122   249999 99999997543

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=98.49  E-value=4.7e-07  Score=66.87  Aligned_cols=45  Identities=13%  Similarity=0.285  Sum_probs=37.4

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND  121 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~  121 (203)
                      +|+ ++|+.|+++|||+|... .|.+.++++++++.++. +..|..|.
T Consensus        20 ~~k-~vlv~f~a~wC~~C~~~-~~~~~~la~~~~~~~~~-~~~vd~d~   64 (109)
T cd02993          20 RNQ-STLVVLYAPWCPFCQAM-EASYEELAEKLAGSNVK-VAKFNADG   64 (109)
T ss_pred             cCC-CEEEEEECCCCHHHHHH-hHHHHHHHHHhccCCeE-EEEEECCc
Confidence            455 67888999999999998 89999999999876776 77776654

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=98.48  E-value=7.1e-07  Score=63.79  Aligned_cols=73  Identities=5%  Similarity=0.123  Sum_probs=51.7

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK  156 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~  156 (203)
                      +.|++.||++||++|... .+.|.++.+++ ..++. ++.|..                       +...++++.|++..
T Consensus        15 ~~v~v~f~~~~C~~C~~~-~~~l~~l~~~~-~~~i~-~~~vd~-----------------------~~~~~~~~~~~i~~   68 (97)
T cd02984          15 KLLVLHFWAPWAEPCKQM-NQVFEELAKEA-FPSVL-FLSIEA-----------------------EELPEISEKFEITA   68 (97)
T ss_pred             CEEEEEEECCCCHHHHHH-hHHHHHHHHHh-CCceE-EEEEcc-----------------------ccCHHHHHhcCCcc
Confidence            478888999999999988 78898888776 33444 555432                       12346777788753


Q ss_pred             ccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          157 DLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       157 ~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                                 .|+.+++++|+++....+.
T Consensus        69 -----------~Pt~~~~~~g~~~~~~~g~   87 (97)
T cd02984          69 -----------VPTFVFFRNGTIVDRVSGA   87 (97)
T ss_pred             -----------ccEEEEEECCEEEEEEeCC
Confidence                       3655566799998888764

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=98.47  E-value=5.6e-07  Score=66.09  Aligned_cols=89  Identities=9%  Similarity=0.041  Sum_probs=54.9

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK  156 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~  156 (203)
                      +.+++.|+++||++|... .|.++++++++++..-+                  ...+. -..+=.|.+..++++||+..
T Consensus        19 ~~vlv~F~a~wC~~C~~~-~p~~~~~a~~~~~~~~~------------------~~~~~-~~~vd~d~~~~l~~~~~v~~   78 (108)
T cd02996          19 ELVLVNFYADWCRFSQML-HPIFEEAAAKIKEEFPD------------------AGKVV-WGKVDCDKESDIADRYRINK   78 (108)
T ss_pred             CEEEEEEECCCCHHHHhh-HHHHHHHHHHHhhccCC------------------CCcEE-EEEEECCCCHHHHHhCCCCc
Confidence            468889999999999998 89999998888642100                  00011 01222355667888888853


Q ss_pred             ccccccCCCCcceEEEEEeCCEEE-EEEeecCCCCcccCCHHHHHhcC
Q 028808          157 DLSAALLGPRSERWSAYVEDGRIK-ALNVEEAPSKMKVSGGDVILGQI  203 (203)
Q Consensus       157 ~~~~~g~~~~~~r~tfIIddG~I~-~~~~~~~~~~~~~~~a~~vL~~l  203 (203)
                                 .|+.++..+|++. ....+       ..+.+.+.++|
T Consensus        79 -----------~Ptl~~~~~g~~~~~~~~g-------~~~~~~l~~fi  108 (108)
T cd02996          79 -----------YPTLKLFRNGMMMKREYRG-------QRSVEALAEFV  108 (108)
T ss_pred             -----------CCEEEEEeCCcCcceecCC-------CCCHHHHHhhC
Confidence                       4656666788754 22222       23556666543

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=98.43  E-value=1.5e-06  Score=66.09  Aligned_cols=75  Identities=15%  Similarity=0.024  Sum_probs=51.6

Q ss_pred             CCCeEEEEEeeCCCCCC--CC--ccchhhHHHhHHHH-HHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchH
Q 028808           74 KGKKVVIFGLPGAYTGV--CS--NQHVPSYKNNIDKF-KAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSF  148 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~--C~--~ehl~~l~~~~~~f-~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v  148 (203)
                      +.+.+||++||+.||++  |.  .- .|.+.+.+.++ ++.++. ++-|..                       |.+.++
T Consensus        25 ~~~~~vvv~f~a~wc~p~~Ck~~~~-~p~~~~~aa~~l~~~~v~-~~kVD~-----------------------d~~~~L   79 (120)
T cd03065          25 KYDVLCLLYHEPVESDKEAQKQFQM-EELVLELAAQVLEDKGIG-FGLVDS-----------------------KKDAKV   79 (120)
T ss_pred             hCCceEEEEECCCcCChhhChhhcc-hhhHHHHHHHHhhcCCCE-EEEEeC-----------------------CCCHHH
Confidence            34558999999999988  98  44 46666666665 344566 666644                       445678


Q ss_pred             HHHcCCccccccccCCCCcceEEEEEeCCEEEEEEee
Q 028808          149 HKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVE  185 (203)
Q Consensus       149 ~~~yGv~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~  185 (203)
                      +++||+..           .|+.+++.||+++. ..|
T Consensus        80 a~~~~I~~-----------iPTl~lfk~G~~v~-~~G  104 (120)
T cd03065          80 AKKLGLDE-----------EDSIYVFKDDEVIE-YDG  104 (120)
T ss_pred             HHHcCCcc-----------ccEEEEEECCEEEE-eeC
Confidence            88888853           46666667999876 554

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=98.43  E-value=3.4e-07  Score=66.86  Aligned_cols=34  Identities=15%  Similarity=0.380  Sum_probs=29.9

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCC
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGI  111 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv  111 (203)
                      .++|+.||++|||+|... +|.|++++++++..+.
T Consensus        16 ~~vlv~f~a~wC~~C~~~-~p~l~~l~~~~~~~~~   49 (104)
T cd03000          16 DIWLVDFYAPWCGHCKKL-EPVWNEVGAELKSSGS   49 (104)
T ss_pred             CeEEEEEECCCCHHHHhh-ChHHHHHHHHHHhcCC
Confidence            378899999999999999 8999999999976653

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1

Probab=98.42  E-value=1e-06  Score=65.81  Aligned_cols=80  Identities=16%  Similarity=0.342  Sum_probs=63.9

Q ss_pred             ceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC-----
Q 028808           47 DVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND-----  121 (203)
Q Consensus        47 df~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~-----  121 (203)
                      +|++.+.+|         +.++|++ ++|| |+|+.--|+.|+.-. + ...|++++++|+++|+. |++.-++.     
T Consensus         3 df~~~~~~G---------~~v~l~~-y~Gk-v~LIVNvAs~Cg~t~-q-y~~L~~L~~ky~~~gl~-ILaFPcnqFg~QE   68 (108)
T PF00255_consen    3 DFSAKDIDG---------KPVSLSK-YKGK-VLLIVNVASKCGYTK-Q-YKQLNELYEKYKDKGLE-ILAFPCNQFGNQE   68 (108)
T ss_dssp             GSEEEBTTS---------SEEEGGG-GTTS-EEEEEEEESSSTTHH-H-HHHHHHHHHHHGGGTEE-EEEEEBSTTTTTT
T ss_pred             ceeeeCCCC---------CEECHHH-cCCC-EEEEEecccccCCcc-c-cHHHHHHHHHHhcCCeE-EEeeehHHhcccc
Confidence            688899886         8999999 5998 555555689998776 7 89999999999999998 99987653     


Q ss_pred             ---HHHHHHHHHH-hCCCCceEEEe
Q 028808          122 ---PYVMNGWAEK-LQAKDVIEFYG  142 (203)
Q Consensus       122 ---~~~~~~~~~~-~~l~~~fplls  142 (203)
                         ....+.|+.. .+.+  ||+..
T Consensus        69 p~~~~ei~~~~~~~~~~~--F~vf~   91 (108)
T PF00255_consen   69 PGSNEEIKEFCKEKFGVT--FPVFE   91 (108)
T ss_dssp             SSCHHHHHHHHCHCHT-S--SEEBS
T ss_pred             CCCHHHHHHHHHhccCCc--ccceE
Confidence               3467788777 5664  88865

11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=98.37  E-value=2e-06  Score=65.33  Aligned_cols=90  Identities=7%  Similarity=0.106  Sum_probs=58.3

Q ss_pred             eeeeccc---ccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHH--------HHHHHHHHhC
Q 028808           65 ATTPIKD---IFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPY--------VMNGWAEKLQ  133 (203)
Q Consensus        65 ~~vsL~d---l~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~--------~~~~~~~~~~  133 (203)
                      ..++..+   .++.+..++++|.++|||+|+.- .|.|.++.++   .++. ++-|.+|...        ...+|.++++
T Consensus         9 ~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~-~P~l~~~~~~---~~~~-~y~vdvd~~~~~~~~~~~~~~~~~~~~~   83 (122)
T TIGR01295         9 EVTTVVRALEALDKKETATFFIGRKTCPYCRKF-SGTLSGVVAQ---TKAP-IYYIDSENNGSFEMSSLNDLTAFRSRFG   83 (122)
T ss_pred             eecCHHHHHHHHHcCCcEEEEEECCCChhHHHH-hHHHHHHHHh---cCCc-EEEEECCCccCcCcccHHHHHHHHHHcC
Confidence            4455444   22333467788999999999998 7999988776   3467 8899887321        2333444443


Q ss_pred             CCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          134 AKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       134 l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      +.                +++           ...|+.+++.||+.+...++.
T Consensus        84 i~----------------~~i-----------~~~PT~v~~k~Gk~v~~~~G~  109 (122)
T TIGR01295        84 IP----------------TSF-----------MGTPTFVHITDGKQVSVRCGS  109 (122)
T ss_pred             Cc----------------ccC-----------CCCCEEEEEeCCeEEEEEeCC
Confidence            32                122           134766666799999998875

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>PHA02278 thioredoxin-like protein

Probab=98.37  E-value=1.1e-06  Score=65.01  Aligned_cols=77  Identities=13%  Similarity=0.067  Sum_probs=53.6

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK  156 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~  156 (203)
                      ..||+.||++||++|..- .|.|.++.+++.. .+. ++-|..|...                +  | ..+++++|++..
T Consensus        15 ~~vvV~F~A~WCgpCk~m-~p~l~~l~~~~~~-~~~-~~~vdvd~~~----------------~--d-~~~l~~~~~I~~   72 (103)
T PHA02278         15 KDVIVMITQDNCGKCEIL-KSVIPMFQESGDI-KKP-ILTLNLDAED----------------V--D-REKAVKLFDIMS   72 (103)
T ss_pred             CcEEEEEECCCCHHHHhH-HHHHHHHHhhhcC-Cce-EEEEECCccc----------------c--c-cHHHHHHCCCcc
Confidence            367889999999999998 7989888766432 245 6667665411                0  1 234777787753


Q ss_pred             ccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          157 DLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       157 ~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                                 .|+.++..||+++.+..|.
T Consensus        73 -----------iPT~i~fk~G~~v~~~~G~   91 (103)
T PHA02278         73 -----------TPVLIGYKDGQLVKKYEDQ   91 (103)
T ss_pred             -----------ccEEEEEECCEEEEEEeCC
Confidence                       4655555799999998874

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=98.32  E-value=6.1e-07  Score=65.03  Aligned_cols=42  Identities=12%  Similarity=0.298  Sum_probs=34.9

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND  121 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~  121 (203)
                      +++++.||++||++|... .|.|+++.++++.. +. +..|..|.
T Consensus        19 ~~~~v~f~a~wC~~C~~~-~p~~~~~a~~~~~~-~~-~~~vd~~~   60 (101)
T cd03003          19 EIWFVNFYSPRCSHCHDL-APTWREFAKEMDGV-IR-IGAVNCGD   60 (101)
T ss_pred             CeEEEEEECCCChHHHHh-HHHHHHHHHHhcCc-eE-EEEEeCCc
Confidence            478889999999999998 89999999998753 65 77787754

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=98.31  E-value=4.5e-06  Score=57.55  Aligned_cols=72  Identities=13%  Similarity=0.228  Sum_probs=50.8

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK  156 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~  156 (203)
                      +.+++.|++.||+.|... .+.+++...+  ..++. ++.|+.+.                       +.++.+.||+..
T Consensus        11 ~~~ll~~~~~~C~~C~~~-~~~~~~~~~~--~~~~~-~~~i~~~~-----------------------~~~~~~~~~v~~   63 (93)
T cd02947          11 KPVVVDFWAPWCGPCKAI-APVLEELAEE--YPKVK-FVKVDVDE-----------------------NPELAEEYGVRS   63 (93)
T ss_pred             CcEEEEEECCCChhHHHh-hHHHHHHHHH--CCCce-EEEEECCC-----------------------ChhHHHhcCccc
Confidence            467888999999999988 7888887766  34566 77776554                       344566676642


Q ss_pred             ccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          157 DLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       157 ~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                                 .|+.+++++|++++...+.
T Consensus        64 -----------~P~~~~~~~g~~~~~~~g~   82 (93)
T cd02947          64 -----------IPTFLFFKNGKEVDRVVGA   82 (93)
T ss_pred             -----------ccEEEEEECCEEEEEEecC
Confidence                       3555666688888777653

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.27  E-value=1.5e-06  Score=61.34  Aligned_cols=83  Identities=11%  Similarity=0.111  Sum_probs=54.9

Q ss_pred             EEEEEeeCCCCCCCCccchhhHHHhHHHHH-HcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808           78 VVIFGLPGAYTGVCSNQHVPSYKNNIDKFK-AKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK  156 (203)
Q Consensus        78 vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~-~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~  156 (203)
                      .+++.||++||+.|... .+.+.+..+.++ ..++. ++.|+.+                       .+.++++.||+..
T Consensus        17 ~~~v~f~~~~C~~C~~~-~~~~~~~~~~~~~~~~~~-~~~v~~~-----------------------~~~~~~~~~~i~~   71 (101)
T cd02961          17 DVLVEFYAPWCGHCKAL-APEYEKLAKELKGDGKVV-VAKVDCT-----------------------ANNDLCSEYGVRG   71 (101)
T ss_pred             cEEEEEECCCCHHHHhh-hHHHHHHHHHhccCCceE-EEEeecc-----------------------chHHHHHhCCCCC
Confidence            78888999999999998 799999888875 33454 5555432                       2456677777742


Q ss_pred             ccccccCCCCcceEEEEEe-CCEEEEEEeecCCCCcccCCHHHHHhcC
Q 028808          157 DLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSKMKVSGGDVILGQI  203 (203)
Q Consensus       157 ~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~~~~~~a~~vL~~l  203 (203)
                                 .|+.++++ +|+......+       ..+++++++.|
T Consensus        72 -----------~Pt~~~~~~~~~~~~~~~g-------~~~~~~i~~~~  101 (101)
T cd02961          72 -----------YPTIKLFPNGSKEPVKYEG-------PRTLESLVEFI  101 (101)
T ss_pred             -----------CCEEEEEcCCCcccccCCC-------CcCHHHHHhhC
Confidence                       46778888 5543333322       23677776653

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=98.26  E-value=3.5e-06  Score=60.26  Aligned_cols=74  Identities=14%  Similarity=0.192  Sum_probs=50.1

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcC-CcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHc
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKG-IDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSL  152 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~g-v~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~y  152 (203)
                      +++ ++++.||++||+.|... .+.++++.++++..+ +. ++.+..                       |.+..+++.|
T Consensus        12 ~~~-~~~i~f~~~~C~~c~~~-~~~~~~~~~~~~~~~~~~-~~~~d~-----------------------~~~~~~~~~~   65 (102)
T TIGR01126        12 SNK-DVLVEFYAPWCGHCKNL-APEYEKLAKELKGDPDIV-LAKVDA-----------------------TAEKDLASRF   65 (102)
T ss_pred             cCC-cEEEEEECCCCHHHHhh-ChHHHHHHHHhccCCceE-EEEEEc-----------------------cchHHHHHhC
Confidence            444 67888999999999998 799999888887543 33 333322                       2345677778


Q ss_pred             CCccccccccCCCCcceEEEEEe-CCEEEEEEee
Q 028808          153 DLGKDLSAALLGPRSERWSAYVE-DGRIKALNVE  185 (203)
Q Consensus       153 Gv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~  185 (203)
                      |+..           .|+.++++ ++. ...+.+
T Consensus        66 ~i~~-----------~P~~~~~~~~~~-~~~~~g   87 (102)
T TIGR01126        66 GVSG-----------FPTIKFFPKGKK-PVDYEG   87 (102)
T ss_pred             CCCc-----------CCEEEEecCCCc-ceeecC
Confidence            7743           46678888 554 444443

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=98.26  E-value=5.4e-06  Score=61.68  Aligned_cols=77  Identities=16%  Similarity=0.328  Sum_probs=56.6

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      .+++.+++.|.++||++|..- -|.|.++..+|.+  +. ++-|.+|.   ..                    ++++.|+
T Consensus        19 ~~~kliVvdF~a~wCgPCk~i-~P~~~~La~~y~~--v~-Flkvdvde---~~--------------------~~~~~~~   71 (106)
T KOG0907|consen   19 AGDKLVVVDFYATWCGPCKAI-APKFEKLAEKYPD--VV-FLKVDVDE---LE--------------------EVAKEFN   71 (106)
T ss_pred             CCCCeEEEEEECCCCcchhhh-hhHHHHHHHHCCC--CE-EEEEeccc---CH--------------------hHHHhcC
Confidence            343478888999999999998 6999999999976  66 88888776   22                    3555565


Q ss_pred             CccccccccCCCCcceEEEEEeCCEEEEEEeecCC
Q 028808          154 LGKDLSAALLGPRSERWSAYVEDGRIKALNVEEAP  188 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~~~  188 (203)
                      +..           .|+..++.+|+.+-..++.++
T Consensus        72 V~~-----------~PTf~f~k~g~~~~~~vGa~~   95 (106)
T KOG0907|consen   72 VKA-----------MPTFVFYKGGEEVDEVVGANK   95 (106)
T ss_pred             ceE-----------eeEEEEEECCEEEEEEecCCH
Confidence            542           344444469999988888764

>TIGR01068 thioredoxin thioredoxin

Probab=98.24  E-value=4.6e-06  Score=59.28  Aligned_cols=72  Identities=11%  Similarity=0.228  Sum_probs=51.6

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK  156 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~  156 (203)
                      ..+++.||++||+.|... .+.|+++.+++.. .+. ++.|..+.                       +.++.++||+..
T Consensus        15 ~~vvi~f~~~~C~~C~~~-~~~l~~~~~~~~~-~~~-~~~vd~~~-----------------------~~~~~~~~~v~~   68 (101)
T TIGR01068        15 KPVLVDFWAPWCGPCKMI-APILEELAKEYEG-KVK-FVKLNVDE-----------------------NPDIAAKYGIRS   68 (101)
T ss_pred             CcEEEEEECCCCHHHHHh-CHHHHHHHHHhcC-CeE-EEEEECCC-----------------------CHHHHHHcCCCc
Confidence            367788999999999998 8999988888753 366 66665432                       335667777742


Q ss_pred             ccccccCCCCcceEEEEEeCCEEEEEEee
Q 028808          157 DLSAALLGPRSERWSAYVEDGRIKALNVE  185 (203)
Q Consensus       157 ~~~~~g~~~~~~r~tfIIddG~I~~~~~~  185 (203)
                                 .|+.+++++|++.+...+
T Consensus        69 -----------~P~~~~~~~g~~~~~~~g   86 (101)
T TIGR01068        69 -----------IPTLLLFKNGKEVDRSVG   86 (101)
T ss_pred             -----------CCEEEEEeCCcEeeeecC
Confidence                       466677788887766544

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=98.23  E-value=3.3e-06  Score=64.11  Aligned_cols=77  Identities=16%  Similarity=0.232  Sum_probs=54.6

Q ss_pred             CCCeEEEEEeeC-------CCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCc
Q 028808           74 KGKKVVIFGLPG-------AYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDG  146 (203)
Q Consensus        74 ~gk~vVL~~f~~-------~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~  146 (203)
                      +|+ .|++.|+|       +|||+|+.. .|.++++.++++. ++. ++-|.+|+.                +.+.|++.
T Consensus        20 ~~~-~vvV~F~A~~~~~~~~WC~pCr~~-~P~l~~l~~~~~~-~v~-fv~Vdvd~~----------------~~w~d~~~   79 (119)
T cd02952          20 EGK-PIFILFYGDKDPDGQSWCPDCVKA-EPVVREALKAAPE-DCV-FIYCDVGDR----------------PYWRDPNN   79 (119)
T ss_pred             CCC-eEEEEEEccCCCCCCCCCHhHHhh-chhHHHHHHHCCC-CCE-EEEEEcCCc----------------ccccCcch
Confidence            466 56777999       999999998 8999999988863 476 888877652                23446667


Q ss_pred             hHHHHcCCccccccccCCCCcceEEEEEe-CCEEE
Q 028808          147 SFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIK  180 (203)
Q Consensus       147 ~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~  180 (203)
                      .+++.|++. .         ..|+.++++ .++++
T Consensus        80 ~~~~~~~I~-~---------~iPT~~~~~~~~~l~  104 (119)
T cd02952          80 PFRTDPKLT-T---------GVPTLLRWKTPQRLV  104 (119)
T ss_pred             hhHhccCcc-c---------CCCEEEEEcCCceec
Confidence            788888875 1         246566666 44444

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=98.17  E-value=1e-05  Score=60.64  Aligned_cols=72  Identities=10%  Similarity=0.081  Sum_probs=52.9

Q ss_pred             EEEEEeeCCC--CCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCc
Q 028808           78 VVIFGLPGAY--TGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLG  155 (203)
Q Consensus        78 vVL~~f~~~~--cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~  155 (203)
                      +++++|+++|  ||.|..- .|.|.++.+++.++ +. ++-|..                       |.+.+++..|++.
T Consensus        29 ~~v~~f~~~~~~cp~c~~i-~P~leela~e~~~~-v~-f~kVdi-----------------------d~~~~la~~f~V~   82 (111)
T cd02965          29 DLVLLLAGDPVRFPEVLDV-AVVLPELLKAFPGR-FR-AAVVGR-----------------------ADEQALAARFGVL   82 (111)
T ss_pred             CEEEEecCCcccCcchhhh-HhHHHHHHHHCCCc-EE-EEEEEC-----------------------CCCHHHHHHcCCC
Confidence            4667899997  9999998 89999998888653 33 444433                       3345778888885


Q ss_pred             cccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          156 KDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       156 ~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      .           .|+.++..||+++....|.
T Consensus        83 s-----------IPTli~fkdGk~v~~~~G~  102 (111)
T cd02965          83 R-----------TPALLFFRDGRYVGVLAGI  102 (111)
T ss_pred             c-----------CCEEEEEECCEEEEEEeCc
Confidence            3           4656666799999988764

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=98.16  E-value=1.4e-05  Score=59.32  Aligned_cols=72  Identities=10%  Similarity=0.009  Sum_probs=50.1

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK  156 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~  156 (203)
                      ..|++.||++||++|..- .|.|+++.+++.  ++. ++-|..+.                       . .++++|++..
T Consensus        25 ~~vvv~F~a~~c~~C~~l-~~~l~~la~~~~--~v~-f~~vd~~~-----------------------~-~l~~~~~i~~   76 (113)
T cd02957          25 TRVVVHFYEPGFPRCKIL-DSHLEELAAKYP--ETK-FVKINAEK-----------------------A-FLVNYLDIKV   76 (113)
T ss_pred             CEEEEEEeCCCCCcHHHH-HHHHHHHHHHCC--CcE-EEEEEchh-----------------------h-HHHHhcCCCc
Confidence            467789999999999987 788988888764  344 44443322                       2 4556666642


Q ss_pred             ccccccCCCCcceEEEEEeCCEEEEEEeecC
Q 028808          157 DLSAALLGPRSERWSAYVEDGRIKALNVEEA  187 (203)
Q Consensus       157 ~~~~~g~~~~~~r~tfIIddG~I~~~~~~~~  187 (203)
                                 .|+.++..+|+++....+..
T Consensus        77 -----------~Pt~~~f~~G~~v~~~~G~~   96 (113)
T cd02957          77 -----------LPTLLVYKNGELIDNIVGFE   96 (113)
T ss_pred             -----------CCEEEEEECCEEEEEEecHH
Confidence                       36555556999999988753

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=98.12  E-value=3e-06  Score=63.82  Aligned_cols=44  Identities=16%  Similarity=0.393  Sum_probs=31.7

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND  121 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~  121 (203)
                      +|| .||+.|+++||++|... .|.+.+..+..+ .+.. ++.|..|.
T Consensus        18 ~~k-pVlV~F~a~WC~~C~~~-~~~~~~~~~~~~-~~~~-fv~v~vd~   61 (117)
T cd02959          18 SGK-PLMLLIHKTWCGACKAL-KPKFAESKEISE-LSHN-FVMVNLED   61 (117)
T ss_pred             cCC-cEEEEEeCCcCHHHHHH-HHHHhhhHHHHh-hcCc-EEEEEecC
Confidence            566 67888999999999988 788887655443 3445 66666653

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=98.11  E-value=3.9e-06  Score=63.00  Aligned_cols=44  Identities=5%  Similarity=0.074  Sum_probs=35.1

Q ss_pred             CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC
Q 028808           75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND  121 (203)
Q Consensus        75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~  121 (203)
                      +++.+|+.|+++||++|..- .|.|+++++++++. +. +..|..|.
T Consensus        28 ~~~~vlV~FyA~WC~~Ck~l-~p~~~~la~~~~~~-v~-~~~Vd~d~   71 (113)
T cd03006          28 DAEVSLVMYYAPWDAQSQAA-RQEFEQVAQKLSDQ-VL-FVAINCWW   71 (113)
T ss_pred             CCCEEEEEEECCCCHHHHHH-HHHHHHHHHHhcCC-eE-EEEEECCC
Confidence            34578889999999999988 89999999998653 55 66676653

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=98.08  E-value=7.7e-06  Score=68.52  Aligned_cols=70  Identities=9%  Similarity=0.155  Sum_probs=50.0

Q ss_pred             EEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccc
Q 028808           78 VVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKD  157 (203)
Q Consensus        78 vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~  157 (203)
                      .+++.||++||++|... .|.++++++++++. +. +..|..                       |.+..++++|++.. 
T Consensus        54 ~vlV~FyApWC~~Ck~~-~P~~e~la~~~~~~-v~-~~~VD~-----------------------~~~~~l~~~~~I~~-  106 (224)
T PTZ00443         54 PWFVKFYAPWCSHCRKM-APAWERLAKALKGQ-VN-VADLDA-----------------------TRALNLAKRFAIKG-  106 (224)
T ss_pred             CEEEEEECCCChHHHHH-HHHHHHHHHHcCCC-eE-EEEecC-----------------------cccHHHHHHcCCCc-
Confidence            57788999999999998 89999999888642 33 333322                       22346778888753 


Q ss_pred             cccccCCCCcceEEEEEeCCEEEEEEe
Q 028808          158 LSAALLGPRSERWSAYVEDGRIKALNV  184 (203)
Q Consensus       158 ~~~~g~~~~~~r~tfIIddG~I~~~~~  184 (203)
                                .|+.+++++|+++....
T Consensus       107 ----------~PTl~~f~~G~~v~~~~  123 (224)
T PTZ00443        107 ----------YPTLLLFDKGKMYQYEG  123 (224)
T ss_pred             ----------CCEEEEEECCEEEEeeC
Confidence                      47778888898776543

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=98.08  E-value=1.1e-05  Score=57.67  Aligned_cols=73  Identities=11%  Similarity=0.168  Sum_probs=53.4

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK  156 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~  156 (203)
                      +.+|+.|++.||+.|... .|.|+++.+++.+ ++. ++-|..+.                       +..++++|++..
T Consensus        18 ~~vvv~f~~~~C~~C~~~-~~~~~~~~~~~~~-~v~-~~~vd~~~-----------------------~~~l~~~~~v~~   71 (103)
T PF00085_consen   18 KPVVVYFYAPWCPPCKAF-KPILEKLAKEYKD-NVK-FAKVDCDE-----------------------NKELCKKYGVKS   71 (103)
T ss_dssp             SEEEEEEESTTSHHHHHH-HHHHHHHHHHTTT-TSE-EEEEETTT-----------------------SHHHHHHTTCSS
T ss_pred             CCEEEEEeCCCCCccccc-cceeccccccccc-ccc-cchhhhhc-----------------------cchhhhccCCCC
Confidence            367778999999999998 8999999998876 565 66665532                       245667777643


Q ss_pred             ccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          157 DLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       157 ~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                                 .|+.+++.+|+......+.
T Consensus        72 -----------~Pt~~~~~~g~~~~~~~g~   90 (103)
T PF00085_consen   72 -----------VPTIIFFKNGKEVKRYNGP   90 (103)
T ss_dssp             -----------SSEEEEEETTEEEEEEESS
T ss_pred             -----------CCEEEEEECCcEEEEEECC
Confidence                       4666666799888866543

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=98.07  E-value=1.4e-05  Score=60.18  Aligned_cols=42  Identities=14%  Similarity=0.212  Sum_probs=33.8

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND  121 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~  121 (203)
                      ++|++.|+++|||+|..- -|-|.++.+++++. +. ++-|.+|.
T Consensus        15 klVVVdF~a~WC~pCk~m-dp~l~ela~~~~~~-~~-f~kVDVDe   56 (114)
T cd02986          15 KVLVLRFGRDEDAVCLQL-DDILSKTSHDLSKM-AS-IYLVDVDK   56 (114)
T ss_pred             CEEEEEEeCCCChhHHHH-HHHHHHHHHHccCc-eE-EEEEeccc
Confidence            488889999999999876 59999999998643 55 77776665

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=5.8e-06  Score=71.40  Aligned_cols=75  Identities=16%  Similarity=0.196  Sum_probs=56.9

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK  156 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~  156 (203)
                      ..|||.||+.||++|..= +|.|+++..+++.+ +. +.-|++                       |.+..++..||+. 
T Consensus        44 ~PVlV~fWap~~~~c~qL-~p~Lekla~~~~G~-f~-LakvN~-----------------------D~~p~vAaqfgiq-   96 (304)
T COG3118          44 VPVLVDFWAPWCGPCKQL-TPTLEKLAAEYKGK-FK-LAKVNC-----------------------DAEPMVAAQFGVQ-   96 (304)
T ss_pred             CCeEEEecCCCCchHHHH-HHHHHHHHHHhCCc-eE-EEEecC-----------------------CcchhHHHHhCcC-
Confidence            368889999999999987 89999999998754 33 333433                       5556678888885 


Q ss_pred             ccccccCCCCcceEEEEEeCCEEEEEEeecCC
Q 028808          157 DLSAALLGPRSERWSAYVEDGRIKALNVEEAP  188 (203)
Q Consensus       157 ~~~~~g~~~~~~r~tfIIddG~I~~~~~~~~~  188 (203)
                                +.|++|++.||+=+--+.+..|
T Consensus        97 ----------sIPtV~af~dGqpVdgF~G~qP  118 (304)
T COG3118          97 ----------SIPTVYAFKDGQPVDGFQGAQP  118 (304)
T ss_pred             ----------cCCeEEEeeCCcCccccCCCCc
Confidence                      4677888889988888777654

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=97.99  E-value=1.3e-05  Score=59.84  Aligned_cols=31  Identities=13%  Similarity=0.375  Sum_probs=27.9

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHHHH
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKA  108 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~  108 (203)
                      +.|++.||++||++|... .|.|+++.++|++
T Consensus        20 ~~vvV~f~a~wC~~C~~~-~~~~~~la~~~~~   50 (114)
T cd02992          20 SAWLVEFYASWCGHCRAF-APTWKKLARDLRK   50 (114)
T ss_pred             CeEEEEEECCCCHHHHHH-hHHHHHHHHHHHh
Confidence            478889999999999999 8999999998875

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=97.99  E-value=8.9e-06  Score=58.42  Aligned_cols=71  Identities=13%  Similarity=0.218  Sum_probs=48.2

Q ss_pred             EEEEEeeCCCCCCCCccchhhHHHhHHHHHH-cCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808           78 VVIFGLPGAYTGVCSNQHVPSYKNNIDKFKA-KGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK  156 (203)
Q Consensus        78 vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~-~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~  156 (203)
                      .+++.||++||+.|... .+.+.++.++++. .++. ++.+..+..                      ...+++.|++..
T Consensus        20 ~~~v~f~a~~C~~C~~~-~~~~~~~~~~~~~~~~~~-~~~id~~~~----------------------~~~~~~~~~i~~   75 (105)
T cd02998          20 DVLVEFYAPWCGHCKNL-APEYEKLAAVFANEDDVV-IAKVDADEA----------------------NKDLAKKYGVSG   75 (105)
T ss_pred             cEEEEEECCCCHHHHhh-ChHHHHHHHHhCCCCCEE-EEEEECCCc----------------------chhhHHhCCCCC
Confidence            67888999999999998 8999999998873 2344 555544331                      345677777742


Q ss_pred             ccccccCCCCcceEEEEEe-CCEEEEEE
Q 028808          157 DLSAALLGPRSERWSAYVE-DGRIKALN  183 (203)
Q Consensus       157 ~~~~~g~~~~~~r~tfIId-dG~I~~~~  183 (203)
                                 .|+.++++ +|+....+
T Consensus        76 -----------~P~~~~~~~~~~~~~~~   92 (105)
T cd02998          76 -----------FPTLKFFPKGSTEPVKY   92 (105)
T ss_pred             -----------cCEEEEEeCCCCCcccc
Confidence                       46677777 54444443

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>KOG4498 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.98  E-value=2.1e-05  Score=63.73  Aligned_cols=132  Identities=15%  Similarity=0.158  Sum_probs=96.6

Q ss_pred             eeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeC
Q 028808           65 ATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDF  144 (203)
Q Consensus        65 ~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~  144 (203)
                      +.+.+.+|++....|+.+.+.--|-.|+++ ..+|.++.+-++++|+. +|+|-+.+-.....|.++-...  =.++.|+
T Consensus        40 ~~vp~~~L~~~~~avV~~vRrpgCvlCR~~-aadLa~l~~~ld~~Gv~-Li~vg~g~~~~~~~f~~q~~f~--gevylD~  115 (197)
T KOG4498|consen   40 ESVPVTSLFKERSAVVAFVRRPGCVLCREE-AADLASLKDLLDELGVV-LIAVGPGSHVQFEDFWDQTYFS--GEVYLDP  115 (197)
T ss_pred             ceeehHHhhhcCCeEEEEeccCcEEEeHHH-HHHHHHHHHHHHHhCCE-EEEEeccceeecchhhcccCcc--eeEEEcC
Confidence            889999998877789999999999999999 89999997778899998 9999775555556677776665  5888899


Q ss_pred             CchHHHHcCCccccc-c--------------ccCC------CCcceEEEEEe-CCEEEEEEeecCCCCcccCCHHHHHhc
Q 028808          145 DGSFHKSLDLGKDLS-A--------------ALLG------PRSERWSAYVE-DGRIKALNVEEAPSKMKVSGGDVILGQ  202 (203)
Q Consensus       145 ~~~v~~~yGv~~~~~-~--------------~g~~------~~~~r~tfIId-dG~I~~~~~~~~~~~~~~~~a~~vL~~  202 (203)
                      +.++-+.++...... .              .|+.      ....+.+++|. .|+|.+.|+...++  |....+.||+.
T Consensus       116 ~~~~Y~~le~k~~~~g~l~~g~~~~~~Ka~~~gv~gn~~gd~~~~gG~~~V~~G~~il~~h~dk~~g--D~~~i~~Vl~v  193 (197)
T KOG4498|consen  116 HRGFYKPLEFKRAEMGFLRPGTDAAAVKAKAVGVEGNLEGDGLLSGGVLVVGRGKKILFIHVDKETG--DHVPIDSVLQV  193 (197)
T ss_pred             ccceechhhhhcccccccccccHHHHHHHhhcccCCCcccChHHhCCeEEEecCCeEEEEEecCCCC--CCcCHHHHHHH
Confidence            888765555433100 0              0111      01235578888 66999999988765  35566666653

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=97.97  E-value=1e-05  Score=63.18  Aligned_cols=74  Identities=9%  Similarity=0.170  Sum_probs=50.5

Q ss_pred             CeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCc
Q 028808           76 KKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLG  155 (203)
Q Consensus        76 k~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~  155 (203)
                      .++||+.|+++||++|..- .|.|.++.+++.+. +. |+-|.+|.                       ..++++.|++.
T Consensus        23 ~~lVVvdF~A~WCgpCk~m-~p~l~~la~~~~~~-~~-~~kVDVDe-----------------------~~dla~~y~I~   76 (142)
T PLN00410         23 ERLVVIRFGHDWDETCMQM-DEVLASVAETIKNF-AV-IYLVDITE-----------------------VPDFNTMYELY   76 (142)
T ss_pred             CCEEEEEEECCCChhHHHH-HHHHHHHHHHcCCc-eE-EEEEECCC-----------------------CHHHHHHcCcc
Confidence            3478899999999999987 79999988887643 33 56665543                       34566666664


Q ss_pred             cccccccCCCCcceEEE-EEeCCE-EEEEEeec
Q 028808          156 KDLSAALLGPRSERWSA-YVEDGR-IKALNVEE  186 (203)
Q Consensus       156 ~~~~~~g~~~~~~r~tf-IIddG~-I~~~~~~~  186 (203)
                      .           .+++| +..+|+ .+....+.
T Consensus        77 ~-----------~~t~~~ffk~g~~~vd~~tG~   98 (142)
T PLN00410         77 D-----------PCTVMFFFRNKHIMIDLGTGN   98 (142)
T ss_pred             C-----------CCcEEEEEECCeEEEEEeccc
Confidence            2           13355 556887 66666554

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=97.96  E-value=9.2e-05  Score=55.28  Aligned_cols=73  Identities=11%  Similarity=-0.051  Sum_probs=52.1

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK  156 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~  156 (203)
                      ..|++.|+++||++|..- -|.+.++.+++.  ++. ++-|..+                       ....++++|++..
T Consensus        23 ~~vvV~f~a~~c~~C~~~-~p~l~~la~~~~--~i~-f~~Vd~~-----------------------~~~~l~~~~~v~~   75 (113)
T cd02989          23 ERVVCHFYHPEFFRCKIM-DKHLEILAKKHL--ETK-FIKVNAE-----------------------KAPFLVEKLNIKV   75 (113)
T ss_pred             CcEEEEEECCCCccHHHH-HHHHHHHHHHcC--CCE-EEEEEcc-----------------------cCHHHHHHCCCcc
Confidence            367788999999999987 688888877764  355 5555443                       3345777787753


Q ss_pred             ccccccCCCCcceEEEEEeCCEEEEEEeecC
Q 028808          157 DLSAALLGPRSERWSAYVEDGRIKALNVEEA  187 (203)
Q Consensus       157 ~~~~~g~~~~~~r~tfIIddG~I~~~~~~~~  187 (203)
                                 .|+.++..+|+++....+..
T Consensus        76 -----------vPt~l~fk~G~~v~~~~g~~   95 (113)
T cd02989          76 -----------LPTVILFKNGKTVDRIVGFE   95 (113)
T ss_pred             -----------CCEEEEEECCEEEEEEECcc
Confidence                       46566667999998887753

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=97.92  E-value=6.3e-05  Score=56.13  Aligned_cols=43  Identities=5%  Similarity=-0.073  Sum_probs=28.9

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN  120 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d  120 (203)
                      +.+..++++|+++|||+|..- .|-++++.+++ + .++ ++-|..|
T Consensus        20 ~~~~~vvv~f~a~wC~~C~~~-~~~l~~la~~~-~-~i~-~~~vd~d   62 (113)
T cd02975          20 KNPVDLVVFSSKEGCQYCEVT-KQLLEELSELS-D-KLK-LEIYDFD   62 (113)
T ss_pred             CCCeEEEEEeCCCCCCChHHH-HHHHHHHHHhc-C-ceE-EEEEeCC
Confidence            334457778999999999876 57777776654 2 255 5555444

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=97.91  E-value=5.1e-05  Score=61.14  Aligned_cols=85  Identities=8%  Similarity=0.031  Sum_probs=58.0

Q ss_pred             EEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccc
Q 028808           78 VVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKD  157 (203)
Q Consensus        78 vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~  157 (203)
                      .||+.||++||++|..- -|.|.+++.+|.  ++. ++-|..+..                        .++..|++.  
T Consensus        85 ~VVV~Fya~wc~~Ck~m-~~~l~~LA~~~~--~vk-F~kVd~d~~------------------------~l~~~f~v~--  134 (175)
T cd02987          85 TVVVHIYEPGIPGCAAL-NSSLLCLAAEYP--AVK-FCKIRASAT------------------------GASDEFDTD--  134 (175)
T ss_pred             EEEEEEECCCCchHHHH-HHHHHHHHHHCC--CeE-EEEEeccch------------------------hhHHhCCCC--
Confidence            67889999999999876 688888888874  355 666655421                        244556553  


Q ss_pred             cccccCCCCcceEEEEEeCCEEEEEEeecCC---CCcccCCHHHHHh
Q 028808          158 LSAALLGPRSERWSAYVEDGRIKALNVEEAP---SKMKVSGGDVILG  201 (203)
Q Consensus       158 ~~~~g~~~~~~r~tfIIddG~I~~~~~~~~~---~~~~~~~a~~vL~  201 (203)
                               +.|+.+|+.+|+++...++...   ..++..+.+.+|.
T Consensus       135 ---------~vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~  172 (175)
T cd02987         135 ---------ALPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLV  172 (175)
T ss_pred             ---------CCCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHH
Confidence                     2465555679999998887642   2355556666664

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=97.90  E-value=2.1e-05  Score=56.46  Aligned_cols=42  Identities=21%  Similarity=0.419  Sum_probs=32.2

Q ss_pred             CeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC
Q 028808           76 KKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN  120 (203)
Q Consensus        76 k~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d  120 (203)
                      ++.+++.||++||+.|... .|.|.++++++... +. +..+..+
T Consensus        18 ~~~vlv~f~a~~C~~C~~~-~~~~~~~~~~~~~~-~~-~~~id~~   59 (103)
T cd03001          18 DDVWLVEFYAPWCGHCKNL-APEWKKAAKALKGI-VK-VGAVDAD   59 (103)
T ss_pred             CCcEEEEEECCCCHHHHHH-hHHHHHHHHHhcCC-ce-EEEEECc
Confidence            3457778999999999998 79999998888643 55 6666543

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=97.87  E-value=1.8e-05  Score=74.72  Aligned_cols=72  Identities=14%  Similarity=0.114  Sum_probs=46.6

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhH---HHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHH
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSY---KNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHK  150 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l---~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~  150 (203)
                      +|| +|++.||++||++|... -+..   .+..++++  ++. ++-+..++..                   +.+.++++
T Consensus       473 ~gK-~VlVdF~A~WC~~Ck~~-e~~~~~~~~v~~~l~--~~~-~v~vDvt~~~-------------------~~~~~l~~  528 (571)
T PRK00293        473 KGK-PVMLDLYADWCVACKEF-EKYTFSDPQVQQALA--DTV-LLQADVTANN-------------------AEDVALLK  528 (571)
T ss_pred             cCC-cEEEEEECCcCHhHHHH-HHHhcCCHHHHHHhc--CCE-EEEEECCCCC-------------------hhhHHHHH
Confidence            466 67889999999999864 3432   33444443  455 6666654321                   12356777


Q ss_pred             HcCCccccccccCCCCcceEEEEEe-CCEEE
Q 028808          151 SLDLGKDLSAALLGPRSERWSAYVE-DGRIK  180 (203)
Q Consensus       151 ~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~  180 (203)
                      +||+..           .|+.+++| ||+++
T Consensus       529 ~~~v~g-----------~Pt~~~~~~~G~~i  548 (571)
T PRK00293        529 HYNVLG-----------LPTILFFDAQGQEI  548 (571)
T ss_pred             HcCCCC-----------CCEEEEECCCCCCc
Confidence            787753           47788889 99985

>PF13728 TraF: F plasmid transfer operon protein

Probab=97.87  E-value=8.7e-05  Score=61.79  Aligned_cols=100  Identities=17%  Similarity=0.155  Sum_probs=66.7

Q ss_pred             eeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCC
Q 028808           66 TTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFD  145 (203)
Q Consensus        66 ~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~  145 (203)
                      .-.|.++ .+++.+++|| .+.||+|..+ .|-+..+.+++   |+. |+.||.|...          ++ .||-... +
T Consensus       112 ~~~l~~l-a~~~gL~~F~-~~~C~~C~~~-~pil~~~~~~y---g~~-v~~vs~DG~~----------~~-~fp~~~~-~  172 (215)
T PF13728_consen  112 DKALKQL-AQKYGLFFFY-RSDCPYCQQQ-APILQQFADKY---GFS-VIPVSLDGRP----------IP-SFPNPRP-D  172 (215)
T ss_pred             HHHHHHH-hhCeEEEEEE-cCCCchhHHH-HHHHHHHHHHh---CCE-EEEEecCCCC----------Cc-CCCCCCC-C
Confidence            4456674 6666655544 5589999999 89999888776   798 9999998632          11 1222211 6


Q ss_pred             chHHHHcCCccccccccCCCCcceEEEEEe-CC-EEEEEEeecCCCCcccCCHHHHHhc
Q 028808          146 GSFHKSLDLGKDLSAALLGPRSERWSAYVE-DG-RIKALNVEEAPSKMKVSGGDVILGQ  202 (203)
Q Consensus       146 ~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG-~I~~~~~~~~~~~~~~~~a~~vL~~  202 (203)
                      ..+++.||+..           .|++|+|+ ++ ++.-+..|       .-+.+++++.
T Consensus       173 ~g~~~~l~v~~-----------~Pal~Lv~~~~~~~~pv~~G-------~~s~~~L~~r  213 (215)
T PF13728_consen  173 PGQAKRLGVKV-----------TPALFLVNPNTKKWYPVSQG-------FMSLDELEDR  213 (215)
T ss_pred             HHHHHHcCCCc-----------CCEEEEEECCCCeEEEEeee-------cCCHHHHHHh
Confidence            77888999853           48899998 65 55545443       3455665543

>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]

Probab=97.86  E-value=5.7e-05  Score=64.04  Aligned_cols=100  Identities=17%  Similarity=0.184  Sum_probs=72.8

Q ss_pred             ceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCC-CCCccchhhHHHhHHHHHHc-CCc-EEEEEecC---
Q 028808           47 DVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTG-VCSNQHVPSYKNNIDKFKAK-GID-SVICVAVN---  120 (203)
Q Consensus        47 df~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp-~C~~ehl~~l~~~~~~f~~~-gv~-~vi~IS~d---  120 (203)
                      .|+|.|.+|         +.++-.| |+|||++| -|--++|| .|..| +..+.+..++++++ |+. +=+.||+|   
T Consensus       121 pF~L~d~~G---------k~~te~d-f~Gkw~Li-YFGFThCPDICPdE-LeKm~~~Vd~i~~~~~~~~~PlFIsvDPeR  188 (280)
T KOG2792|consen  121 PFSLVDHDG---------KRVTEKD-FLGKWSLI-YFGFTHCPDICPDE-LEKMSAVVDEIEAKPGLPPVPLFISVDPER  188 (280)
T ss_pred             ceEEEecCC---------Ceecccc-cccceEEE-EecccCCCCcChHH-HHHHHHHHHHHhccCCCCccceEEEeCccc
Confidence            699999886         8999999 69997554 57889999 79999 99999999999765 443 02677876   


Q ss_pred             -CHHHHHHHHHHhCCC-CceEEEeeCCchHHHHcCCcccc
Q 028808          121 -DPYVMNGWAEKLQAK-DVIEFYGDFDGSFHKSLDLGKDL  158 (203)
Q Consensus       121 -~~~~~~~~~~~~~l~-~~fpllsD~~~~v~~~yGv~~~~  158 (203)
                       +++.++++++++.-. ..+.=-.+.=..++++|.|+...
T Consensus       189 D~~~~~~eY~~eF~pkllGLTGT~eqvk~vak~yRVYfs~  228 (280)
T KOG2792|consen  189 DSVEVVAEYVSEFHPKLLGLTGTTEQVKQVAKKYRVYFST  228 (280)
T ss_pred             CCHHHHHHHHHhcChhhhcccCCHHHHHHHHHHhEEeecc
Confidence             468899999988532 00111113345689999998753

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=97.84  E-value=3.5e-05  Score=69.41  Aligned_cols=41  Identities=27%  Similarity=0.558  Sum_probs=32.8

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcC--CcEEEEEec
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKG--IDSVICVAV  119 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~g--v~~vi~IS~  119 (203)
                      ++++++||++||+.|... .|.+.++++++++.+  +. ++.|.+
T Consensus        19 ~~~~v~f~a~wC~~c~~~-~~~~~~~a~~~~~~~~~v~-~~~vd~   61 (462)
T TIGR01130        19 EFVLVEFYAPWCGHCKSL-APEYEKAADELKKKGPPIK-LAKVDA   61 (462)
T ss_pred             CCEEEEEECCCCHHHHhh-hHHHHHHHHHHhhcCCceE-EEEEEC
Confidence            467889999999999988 899999999988766  44 444543

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PTZ00102 disulphide isomerase; Provisional

Probab=97.83  E-value=4.3e-05  Score=69.65  Aligned_cols=41  Identities=22%  Similarity=0.512  Sum_probs=31.8

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEec
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAV  119 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~  119 (203)
                      +.+++.|++.||+.|... .|.+.++++++++.+.+ +.....
T Consensus        50 ~~~lv~f~a~wC~~Ck~~-~p~~~~~a~~~~~~~~~-i~~~~v   90 (477)
T PTZ00102         50 EIVLVKFYAPWCGHCKRL-APEYKKAAKMLKEKKSE-IVLASV   90 (477)
T ss_pred             CcEEEEEECCCCHHHHHh-hHHHHHHHHHHHhcCCc-EEEEEE
Confidence            368889999999999988 89999998888765544 443333

>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.79  E-value=8.4e-05  Score=61.63  Aligned_cols=87  Identities=9%  Similarity=0.276  Sum_probs=71.9

Q ss_pred             eeecccccCCCeE-EEEEe-----eCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceE
Q 028808           66 TTPIKDIFKGKKV-VIFGL-----PGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIE  139 (203)
Q Consensus        66 ~vsL~dl~~gk~v-VL~~f-----~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fp  139 (203)
                      +.||+|||.|+.- +|+-|     |..-||.|+.- +-++.....-++..++. +++||.-+.+.+.++.+..|.+  ||
T Consensus        63 ~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~l-aD~~dGa~~HL~~~dv~-lv~VsRAPl~~l~~~k~rmGW~--f~  138 (247)
T COG4312          63 KKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFL-ADHWDGAVAHLEHHDVT-LVAVSRAPLEELVAYKRRMGWQ--FP  138 (247)
T ss_pred             chhHHHHhCCCceEEEEEEecCCCccCCCCchhhH-HhhhhhhhhhHhhcCce-EEEEecCcHHHHHHHHHhcCCc--ce
Confidence            6899999999853 33322     34578999876 66776667778888999 9999999999999999999997  99


Q ss_pred             EEeeCCchHHHHcCCcc
Q 028808          140 FYGDFDGSFHKSLDLGK  156 (203)
Q Consensus       140 llsD~~~~v~~~yGv~~  156 (203)
                      .+|+.+..+-+.|.+..
T Consensus       139 w~Ss~~s~Fn~Df~vsf  155 (247)
T COG4312         139 WVSSTDSDFNRDFQVSF  155 (247)
T ss_pred             eEeccCccccccccccc
Confidence            99999999999997754

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=97.76  E-value=3.4e-05  Score=70.95  Aligned_cols=45  Identities=16%  Similarity=0.279  Sum_probs=38.4

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND  121 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~  121 (203)
                      +++ +||+.||++||++|... .|.|++++++|+..++. ++.|..|.
T Consensus       370 ~~k-~VLV~FyApWC~~Ck~m-~P~~eelA~~~~~~~v~-~~kVdvD~  414 (463)
T TIGR00424       370 RKE-AWLVVLYAPWCPFCQAM-EASYLELAEKLAGSGVK-VAKFRADG  414 (463)
T ss_pred             CCC-eEEEEEECCCChHHHHH-HHHHHHHHHHhccCCcE-EEEEECCC
Confidence            344 78889999999999998 89999999999877787 88887764

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=97.65  E-value=7.6e-05  Score=53.48  Aligned_cols=41  Identities=20%  Similarity=0.400  Sum_probs=31.8

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHHHH-cCCcEEEEEec
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKA-KGIDSVICVAV  119 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~-~gv~~vi~IS~  119 (203)
                      +.++++||++||++|... .|.+.++.+++++ ..+. +..|..
T Consensus        19 ~~~~v~f~~~~C~~C~~~-~~~~~~~~~~~~~~~~~~-~~~id~   60 (104)
T cd02995          19 KDVLVEFYAPWCGHCKAL-APIYEELAEKLKGDDNVV-IAKMDA   60 (104)
T ss_pred             CcEEEEEECCCCHHHHHH-hhHHHHHHHHhcCCCCEE-EEEEeC
Confidence            367789999999999998 8999999998876 2344 444544

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=97.65  E-value=0.00016  Score=50.82  Aligned_cols=43  Identities=21%  Similarity=0.483  Sum_probs=35.5

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN  120 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d  120 (203)
                      +++ ++++.||+.|||.|... +|.+.+..+++.. .+. ++.+...
T Consensus        31 ~~~-~~~v~f~~~~C~~C~~~-~~~l~~~~~~~~~-~~~-~~~i~~~   73 (127)
T COG0526          31 KGK-PVLVDFWAPWCPPCRAE-APLLEELAEEYGG-DVE-VVAVNVD   73 (127)
T ss_pred             CCc-eEEEEEEcCcCHHHHhh-chhHHHHHHHhcC-CcE-EEEEECC
Confidence            455 66777889999999999 9999999988875 566 8888875

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=97.65  E-value=0.0002  Score=61.18  Aligned_cols=90  Identities=13%  Similarity=0.136  Sum_probs=61.7

Q ss_pred             eeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeC
Q 028808           65 ATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDF  144 (203)
Q Consensus        65 ~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~  144 (203)
                      +.-.++++ .+++.+++||. +-||.|..+ .|-++...+++   |+. |++||.|..          +++ .||-.- +
T Consensus       141 ~~~~i~~l-a~~~gL~fFy~-~~C~~C~~~-apil~~fa~~y---gi~-v~~VS~DG~----------~~p-~fp~~~-~  201 (256)
T TIGR02739       141 KEKAIQQL-SQSYGLFFFYR-GKSPISQKM-APVIQAFAKEY---GIS-VIPISVDGT----------LIP-GLPNSR-S  201 (256)
T ss_pred             HHHHHHHH-HhceeEEEEEC-CCCchhHHH-HHHHHHHHHHh---CCe-EEEEecCCC----------CCC-CCCCcc-C
Confidence            34456674 66666666555 669999998 89888887765   798 999999873          232 233322 2


Q ss_pred             CchHHHHcCCccccccccCCCCcceEEEEEe-C-CEEEEEEe
Q 028808          145 DGSFHKSLDLGKDLSAALLGPRSERWSAYVE-D-GRIKALNV  184 (203)
Q Consensus       145 ~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-d-G~I~~~~~  184 (203)
                      +...++.+|+..           .|++|+|+ + +++.-+..
T Consensus       202 d~gqa~~l~v~~-----------~Pal~Lv~~~t~~~~pv~~  232 (256)
T TIGR02739       202 DSGQAQHLGVKY-----------FPALYLVNPKSQKMSPLAY  232 (256)
T ss_pred             ChHHHHhcCCcc-----------CceEEEEECCCCcEEEEee
Confidence            566788888853           47899999 6 55544443

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>PTZ00102 disulphide isomerase; Provisional

Probab=97.57  E-value=0.00019  Score=65.35  Aligned_cols=35  Identities=26%  Similarity=0.495  Sum_probs=29.5

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKG  110 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~g  110 (203)
                      .|+ .||+.||++||+.|... .|.|+++++++++.+
T Consensus       374 ~~k-~vlv~f~a~wC~~C~~~-~p~~~~~a~~~~~~~  408 (477)
T PTZ00102        374 SDK-DVLLEIYAPWCGHCKNL-EPVYNELGEKYKDND  408 (477)
T ss_pred             CCC-CEEEEEECCCCHHHHHH-HHHHHHHHHHhccCC
Confidence            355 67888999999999998 899999988887643

>PLN02309 5'-adenylylsulfate reductase

Probab=97.55  E-value=0.00011  Score=67.47  Aligned_cols=44  Identities=16%  Similarity=0.295  Sum_probs=37.6

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN  120 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d  120 (203)
                      +++ ++|+.|++.||++|... .|.|.++.++|+..++. +..|..|
T Consensus       364 ~~k-~vlV~FyApWC~~Cq~m-~p~~e~LA~~~~~~~V~-f~kVD~d  407 (457)
T PLN02309        364 RKE-PWLVVLYAPWCPFCQAM-EASYEELAEKLAGSGVK-VAKFRAD  407 (457)
T ss_pred             CCC-eEEEEEECCCChHHHHH-HHHHHHHHHHhccCCeE-EEEEECC
Confidence            344 67889999999999998 89999999999877787 8888776

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=97.49  E-value=0.00023  Score=44.53  Aligned_cols=45  Identities=13%  Similarity=0.214  Sum_probs=35.3

Q ss_pred             EEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHH
Q 028808           80 IFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGW  128 (203)
Q Consensus        80 L~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~  128 (203)
                      |+.|+.+||+.|... .+.+.++  ++...++. ++.++.+.......+
T Consensus         1 l~~~~~~~c~~c~~~-~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~   45 (69)
T cd01659           1 LVLFYAPWCPFCQAL-RPVLAEL--ALLNKGVK-FEAVDVDEDPALEKE   45 (69)
T ss_pred             CEEEECCCChhHHhh-hhHHHHH--HhhCCCcE-EEEEEcCCChHHhhH
Confidence            357899999999998 7888887  56667888 999998876544444

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=97.48  E-value=0.00086  Score=51.14  Aligned_cols=34  Identities=12%  Similarity=0.024  Sum_probs=20.9

Q ss_pred             ceEEEEEe-CCEEEEEEeecCCC-CcccCCHHHHHh
Q 028808          168 ERWSAYVE-DGRIKALNVEEAPS-KMKVSGGDVILG  201 (203)
Q Consensus       168 ~r~tfIId-dG~I~~~~~~~~~~-~~~~~~a~~vL~  201 (203)
                      .|++++++ +|++++....-.+. ..+..+-..+|+
T Consensus        81 ~Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~  116 (124)
T cd02955          81 WPLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLE  116 (124)
T ss_pred             CCEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHH
Confidence            57888899 99999887553221 133344444444

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>PTZ00062 glutaredoxin; Provisional

Probab=97.40  E-value=0.00037  Score=57.64  Aligned_cols=66  Identities=5%  Similarity=0.017  Sum_probs=46.6

Q ss_pred             EEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccc
Q 028808           78 VVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKD  157 (203)
Q Consensus        78 vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~  157 (203)
                      .++++||++|||.|..- .+-+.++.++|.+  +. ++-|..|                               |++.  
T Consensus        19 ~~vl~f~a~w~~~C~~m-~~vl~~l~~~~~~--~~-F~~V~~d-------------------------------~~V~--   61 (204)
T PTZ00062         19 KLVLYVKSSKEPEYEQL-MDVCNALVEDFPS--LE-FYVVNLA-------------------------------DANN--   61 (204)
T ss_pred             cEEEEEeCCCCcchHHH-HHHHHHHHHHCCC--cE-EEEEccc-------------------------------cCcc--
Confidence            46778999999999864 7778888887743  55 6666433                               5553  


Q ss_pred             cccccCCCCcceEEEEEeCCEEEEEEeecCCC
Q 028808          158 LSAALLGPRSERWSAYVEDGRIKALNVEEAPS  189 (203)
Q Consensus       158 ~~~~g~~~~~~r~tfIIddG~I~~~~~~~~~~  189 (203)
                               +.|+.+++.||+++.+..+.++.
T Consensus        62 ---------~vPtfv~~~~g~~i~r~~G~~~~   84 (204)
T PTZ00062         62 ---------EYGVFEFYQNSQLINSLEGCNTS   84 (204)
T ss_pred             ---------cceEEEEEECCEEEeeeeCCCHH
Confidence                     34644445799999998887654

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=97.38  E-value=0.001  Score=54.99  Aligned_cols=77  Identities=6%  Similarity=-0.022  Sum_probs=48.3

Q ss_pred             CCCeEEEEEee--CCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHH
Q 028808           74 KGKKVVIFGLP--GAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKS  151 (203)
Q Consensus        74 ~gk~vVL~~f~--~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~  151 (203)
                      ++...+++|+-  ++|||+|..- .|-+.++.+++.  +++ +..+..|.                     |.+.++++.
T Consensus        18 ~~~~~i~~f~~~~a~wC~~C~~~-~p~l~~la~~~~--~~~-i~~v~vd~---------------------~~~~~l~~~   72 (215)
T TIGR02187        18 KNPVEIVVFTDNDKEGCQYCKET-EQLLEELSEVSP--KLK-LEIYDFDT---------------------PEDKEEAEK   72 (215)
T ss_pred             CCCeEEEEEcCCCCCCCCchHHH-HHHHHHHHhhCC--Cce-EEEEecCC---------------------cccHHHHHH
Confidence            44434444443  3999999987 788888877763  344 55555543                     235578888


Q ss_pred             cCCccccccccCCCCcceEEEEEeCCEEEE-EEeec
Q 028808          152 LDLGKDLSAALLGPRSERWSAYVEDGRIKA-LNVEE  186 (203)
Q Consensus       152 yGv~~~~~~~g~~~~~~r~tfIIddG~I~~-~~~~~  186 (203)
                      ||+..           .|+.+++++|+.+. .+.+.
T Consensus        73 ~~V~~-----------~Pt~~~f~~g~~~~~~~~G~   97 (215)
T TIGR02187        73 YGVER-----------VPTTIILEEGKDGGIRYTGI   97 (215)
T ss_pred             cCCCc-----------cCEEEEEeCCeeeEEEEeec
Confidence            88853           35455557887763 56553

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=97.33  E-value=0.0012  Score=54.02  Aligned_cols=84  Identities=11%  Similarity=-0.007  Sum_probs=57.0

Q ss_pred             EEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccc
Q 028808           78 VVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKD  157 (203)
Q Consensus        78 vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~  157 (203)
                      .||+.||++||++|..- -+.|.+++.+|.  .+. ++-|..+..                          +..|++.  
T Consensus       104 ~VVV~Fya~wc~~C~~m-~~~l~~LA~k~~--~vk-FvkI~ad~~--------------------------~~~~~i~--  151 (192)
T cd02988         104 WVVVHLYKDGIPLCRLL-NQHLSELARKFP--DTK-FVKIISTQC--------------------------IPNYPDK--  151 (192)
T ss_pred             EEEEEEECCCCchHHHH-HHHHHHHHHHCC--CCE-EEEEEhHHh--------------------------HhhCCCC--
Confidence            67788999999999987 688999998885  366 776765420                          1234443  


Q ss_pred             cccccCCCCcceEEEEEeCCEEEEEEeecCC-C--CcccCCHHHHHhc
Q 028808          158 LSAALLGPRSERWSAYVEDGRIKALNVEEAP-S--KMKVSGGDVILGQ  202 (203)
Q Consensus       158 ~~~~g~~~~~~r~tfIIddG~I~~~~~~~~~-~--~~~~~~a~~vL~~  202 (203)
                               ..|+.++..||+++...++... |  .++..+.+.+|.+
T Consensus       152 ---------~lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~  190 (192)
T cd02988         152 ---------NLPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ  190 (192)
T ss_pred             ---------CCCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence                     2465555579999999988632 1  3455566666643

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=97.33  E-value=0.00041  Score=47.70  Aligned_cols=38  Identities=11%  Similarity=0.100  Sum_probs=29.0

Q ss_pred             EEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEec
Q 028808           79 VIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAV  119 (203)
Q Consensus        79 VL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~  119 (203)
                      .+..|++.|||+|..- .+.+++++++++.. +. ++-|..
T Consensus         2 ~v~~f~~~~C~~C~~~-~~~l~~l~~~~~~~-~~-~~~vd~   39 (82)
T TIGR00411         2 KIELFTSPTCPYCPAA-KRVVEEVAKEMGDA-VE-VEYINV   39 (82)
T ss_pred             EEEEEECCCCcchHHH-HHHHHHHHHHhcCc-eE-EEEEeC
Confidence            4567899999999988 89999988887532 55 666654

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=97.23  E-value=0.0017  Score=55.22  Aligned_cols=90  Identities=14%  Similarity=0.146  Sum_probs=60.9

Q ss_pred             eeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCC
Q 028808           66 TTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFD  145 (203)
Q Consensus        66 ~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~  145 (203)
                      .-.++++ .+++.+++||. +.||.|..+ .|-++...+++   |+. |++||.|..          +++ .||-. =++
T Consensus       135 ~~~i~~l-a~~~GL~fFy~-s~Cp~C~~~-aPil~~fa~~y---g~~-v~~VS~DG~----------~~p-~fp~~-~~d  195 (248)
T PRK13703        135 RQAIAKL-AEHYGLMFFYR-GQDPIDGQL-AQVINDFRDTY---GLS-VIPVSVDGV----------INP-LLPDS-RTD  195 (248)
T ss_pred             HHHHHHH-HhcceEEEEEC-CCCchhHHH-HHHHHHHHHHh---CCe-EEEEecCCC----------CCC-CCCCC-ccC
Confidence            3446674 55666666555 669999998 89888887765   788 999999874          122 23332 124


Q ss_pred             chHHHHcCCccccccccCCCCcceEEEEEe-C-CEEEEEEee
Q 028808          146 GSFHKSLDLGKDLSAALLGPRSERWSAYVE-D-GRIKALNVE  185 (203)
Q Consensus       146 ~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-d-G~I~~~~~~  185 (203)
                      ...++.+|+..           .|++|||+ + +++.-+..|
T Consensus       196 ~gqa~~l~v~~-----------~PAl~Lv~~~t~~~~pv~~G  226 (248)
T PRK13703        196 QGQAQRLGVKY-----------FPALMLVDPKSGSVRPLSYG  226 (248)
T ss_pred             hhHHHhcCCcc-----------cceEEEEECCCCcEEEEeec
Confidence            45557787743           47899998 5 576666554

>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex

Probab=97.20  E-value=0.0014  Score=55.93  Aligned_cols=134  Identities=11%  Similarity=0.205  Sum_probs=84.0

Q ss_pred             cccccccccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHH-HhHH
Q 028808           26 PTSSRAYASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYK-NNID  104 (203)
Q Consensus        26 ~~~~~~~~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~-~~~~  104 (203)
                      -.++..+........+    |+|...++.|         +.+++.+.++||..||..|...|---|...    +. ...+
T Consensus        86 f~ap~~l~~~~kAlyF----P~l~g~tL~g---------~~~~~~~~l~gkvSlV~l~s~~~ge~~~~s----w~~p~~~  148 (252)
T PF05176_consen   86 FIAPPSLFKADKALYF----PNLQGKTLAG---------NKVDTTDLLRGKVSLVCLFSSAWGEEMVDS----WTSPFLE  148 (252)
T ss_pred             ccCCcccCcHHhCCcC----CCCccccCCC---------CCcccccccCCceEEEEEeehHHHHHHHHH----HhhHHHH
Confidence            3344444444445564    9999999876         688888988999766666655665544433    22 2444


Q ss_pred             HHHHc---CCcEEEEEecCCHHHHHHHHHHh-------CCC----CceEEEeeC--CchHHHHcCCccccccccCCCCcc
Q 028808          105 KFKAK---GIDSVICVAVNDPYVMNGWAEKL-------QAK----DVIEFYGDF--DGSFHKSLDLGKDLSAALLGPRSE  168 (203)
Q Consensus       105 ~f~~~---gv~~vi~IS~d~~~~~~~~~~~~-------~l~----~~fpllsD~--~~~v~~~yGv~~~~~~~g~~~~~~  168 (203)
                      +|...   .++ +|=|+..+.. .++|.-+.       .++    .+|-+..+.  ...+-+++|+.....         
T Consensus       149 ~~~~~~~~~~q-~v~In~~e~~-~k~~l~~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~---------  217 (252)
T PF05176_consen  149 DFLQEPYGRVQ-IVEINLIENW-LKSWLVKLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSYV---------  217 (252)
T ss_pred             HHhhCCCCceE-EEEEecchHH-HHHHHHHHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCCc---------
Confidence            45433   576 9999886642 23332221       122    245555543  567888899976432         


Q ss_pred             eEEEEEe-CCEEEEEEeecC
Q 028808          169 RWSAYVE-DGRIKALNVEEA  187 (203)
Q Consensus       169 r~tfIId-dG~I~~~~~~~~  187 (203)
                      -++|||| +|+|+|+--|..
T Consensus       218 GYvyLVD~~grIRWagsG~A  237 (252)
T PF05176_consen  218 GYVYLVDPNGRIRWAGSGPA  237 (252)
T ss_pred             CeEEEECCCCeEEeCccCCC
Confidence            4699999 999999976643

A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane

>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []

Probab=97.20  E-value=0.0024  Score=53.58  Aligned_cols=114  Identities=18%  Similarity=0.188  Sum_probs=76.9

Q ss_pred             CCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcE--EEEEecCCH
Q 028808           45 AQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDS--VICVAVNDP  122 (203)
Q Consensus        45 APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~--vi~IS~d~~  122 (203)
                      +|..++-+.+             -..+ .+|+ |+|+.+--++|..|..| +..|+.+..+|+..|...  +++|+..+.
T Consensus        10 ~p~W~i~~~~-------------pm~~-~~G~-VtvVALL~asc~~c~~q-a~~le~Lr~kL~~~g~~~I~f~vVN~~~~   73 (238)
T PF04592_consen   10 PPPWKIGGQD-------------PMLN-SLGH-VTVVALLQASCYFCLLQ-ASRLEDLREKLENEGLSNISFMVVNHQGE   73 (238)
T ss_pred             CCCceECCch-------------Hhhh-cCCc-EEeeeehhhhhHHHHHH-HHHHHHHHHHHHHCCCCceEEEEEcCCCc
Confidence            5777764432             3344 3787 77777777799999999 999999999999887632  566666554


Q ss_pred             HHHHH-HHHHhCCCCceEEEe-e-CCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808          123 YVMNG-WAEKLQAKDVIEFYG-D-FDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       123 ~~~~~-~~~~~~l~~~fplls-D-~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~  186 (203)
                      .+... +--+...+.+||++- | .+..+...++-..+.            .||+| -|++.|.-.-+
T Consensus        74 ~s~~~~~~l~~r~~~~ipVyqq~~~q~dvW~~L~G~kdD------------~~iyDRCGrL~~~i~~P  129 (238)
T PF04592_consen   74 HSRLKYWELKRRVSEHIPVYQQDENQPDVWELLNGSKDD------------FLIYDRCGRLTYHIPLP  129 (238)
T ss_pred             chhHHHHHHHHhCCCCCceecCCccccCHHHHhCCCcCc------------EEEEeccCcEEEEecCc
Confidence            33222 232333433699996 3 467788777665431            57779 89999986544

It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding

>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ

Probab=97.12  E-value=0.0049  Score=48.89  Aligned_cols=139  Identities=13%  Similarity=0.181  Sum_probs=81.3

Q ss_pred             ccCCCccccCCCceEEeccccc--cCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHH-hHHHHHHc--
Q 028808           35 VAVGSDIVSAAQDVSLQKARTW--DEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKN-NIDKFKAK--  109 (203)
Q Consensus        35 ~~~G~~~~~~APdf~l~~~~g~--~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~-~~~~f~~~--  109 (203)
                      +++|+++    |.+++.+- |.  -+|.+-..+.++.+.+ .|| |-+++|-|--..      ..++++ +.+.+++.  
T Consensus         1 ~~~~~~~----p~V~v~d~-Gel~l~~~~~~y~~W~s~~l-~GK-Vrviq~iAGr~s------ake~N~~l~~aik~a~f   67 (160)
T PF09695_consen    1 ITLGQPV----PPVTVADK-GELILNGDKISYQPWNSAQL-PGK-VRVIQHIAGRSS------AKEMNAPLIEAIKAAKF   67 (160)
T ss_pred             CcCCCcC----CceEecCC-ceEEEcCCcccccccCcccc-CCC-EEEEEEeccCCc------hhHhhHHHHHHHHHcCC
Confidence            4678885    88888653 10  0111122467888884 898 666666644332      233332 44444443  


Q ss_pred             ---CCcEEEE-EecCCH-----HHHHHHHHHhC--CCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CC
Q 028808          110 ---GIDSVIC-VAVNDP-----YVMNGWAEKLQ--AKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DG  177 (203)
Q Consensus       110 ---gv~~vi~-IS~d~~-----~~~~~~~~~~~--l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG  177 (203)
                         .++ ..+ |+.|+.     .-++.-+++..  .+ .=.++.|.++.+.+++++....          -+.+|+| +|
T Consensus        68 ~~d~yq-tttIiN~dDAi~gt~~fVrss~e~~kk~~p-~s~~vlD~~G~~~~aW~L~~~~----------SaiiVlDK~G  135 (160)
T PF09695_consen   68 PHDKYQ-TTTIINLDDAIWGTGGFVRSSAEDSKKEFP-WSQFVLDSNGVVRKAWQLQEES----------SAIIVLDKQG  135 (160)
T ss_pred             Ccccee-EEEEEecccccccchHHHHHHHHHhhhhCC-CcEEEEcCCCceeccccCCCCC----------ceEEEEcCCc
Confidence               233 444 456552     12344444443  33 1247889999999999997532          1245669 99


Q ss_pred             EEEEEEeecCCCCcccCCHHHHHhc
Q 028808          178 RIKALNVEEAPSKMKVSGGDVILGQ  202 (203)
Q Consensus       178 ~I~~~~~~~~~~~~~~~~a~~vL~~  202 (203)
                      +|+|+.-+.    ++-.+.++|++-
T Consensus       136 ~V~F~k~G~----Ls~~Ev~qVi~L  156 (160)
T PF09695_consen  136 KVQFVKEGA----LSPAEVQQVIAL  156 (160)
T ss_pred             cEEEEECCC----CCHHHHHHHHHH
Confidence            999998764    445666676653

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=96.74  E-value=0.0035  Score=43.30  Aligned_cols=36  Identities=22%  Similarity=0.357  Sum_probs=25.4

Q ss_pred             EEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC
Q 028808           81 FGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND  121 (203)
Q Consensus        81 ~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~  121 (203)
                      +.|+++|||.|..- .|.++++.+++   |+. +-.+..|+
T Consensus         3 i~~~a~~C~~C~~~-~~~~~~~~~e~---~~~-~~~~~v~~   38 (76)
T TIGR00412         3 IQIYGTGCANCQMT-EKNVKKAVEEL---GID-AEFEKVTD   38 (76)
T ss_pred             EEEECCCCcCHHHH-HHHHHHHHHHc---CCC-eEEEEeCC
Confidence            45788999999987 68888777665   444 44555554

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=96.57  E-value=0.0066  Score=40.16  Aligned_cols=54  Identities=11%  Similarity=0.066  Sum_probs=34.7

Q ss_pred             EEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC-HHHHHHHHHHhCCCCceEEEee
Q 028808           80 IFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND-PYVMNGWAEKLQAKDVIEFYGD  143 (203)
Q Consensus        80 L~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~-~~~~~~~~~~~~l~~~fpllsD  143 (203)
                      +..|+++|||.|... .+.|       ++.|+. +.-+..++ +...+++.+.++.. .+|.+.+
T Consensus         2 i~lf~~~~C~~C~~~-~~~l-------~~~~i~-~~~vdi~~~~~~~~~~~~~~~~~-~vP~~~~   56 (74)
T TIGR02196         2 VKVYTTPWCPPCKKA-KEYL-------TSKGIA-FEEIDVEKDSAAREEVLKVLGQR-GVPVIVI   56 (74)
T ss_pred             EEEEcCCCChhHHHH-HHHH-------HHCCCe-EEEEeccCCHHHHHHHHHHhCCC-cccEEEE
Confidence            356999999999865 3433       346787 77777764 33345566666654 4555554

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=96.49  E-value=0.006  Score=40.48  Aligned_cols=36  Identities=11%  Similarity=0.042  Sum_probs=21.9

Q ss_pred             EEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEec
Q 028808           80 IFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAV  119 (203)
Q Consensus        80 L~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~  119 (203)
                      +..|+++|||+|..- .+.++++.++.  .+++ +.-+..
T Consensus         3 v~~f~~~~C~~C~~~-~~~l~~l~~~~--~~i~-~~~id~   38 (67)
T cd02973           3 IEVFVSPTCPYCPDA-VQAANRIAALN--PNIS-AEMIDA   38 (67)
T ss_pred             EEEEECCCCCCcHHH-HHHHHHHHHhC--CceE-EEEEEc
Confidence            456899999999765 55555554332  2355 555543

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=96.39  E-value=0.0035  Score=44.87  Aligned_cols=42  Identities=19%  Similarity=0.248  Sum_probs=31.8

Q ss_pred             CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC
Q 028808           75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN  120 (203)
Q Consensus        75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d  120 (203)
                      |+ .++++|++.||+.|..- .+.|.+++++|+.+ +. ++-|..+
T Consensus        12 ~~-~~~~~f~~~~~~~~~~~-~~~~~~vA~~~~~~-v~-f~~vd~~   53 (103)
T cd02982          12 GK-PLLVLFYNKDDSESEEL-RERFKEVAKKFKGK-LL-FVVVDAD   53 (103)
T ss_pred             CC-CEEEEEEcCChhhHHHH-HHHHHHHHHHhCCe-EE-EEEEchH
Confidence            55 46667889999999887 79999999999853 54 5555443

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=96.28  E-value=0.01  Score=39.97  Aligned_cols=33  Identities=12%  Similarity=0.256  Sum_probs=21.8

Q ss_pred             EEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCH
Q 028808           81 FGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDP  122 (203)
Q Consensus        81 ~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~  122 (203)
                      ..|+++|||+|..- .+.       +++.|+. .-.+..+..
T Consensus         3 ~ly~~~~C~~C~~~-~~~-------L~~~~~~-~~~idi~~~   35 (77)
T TIGR02200         3 TVYGTTWCGYCAQL-MRT-------LDKLGAA-YEWVDIEED   35 (77)
T ss_pred             EEEECCCChhHHHH-HHH-------HHHcCCc-eEEEeCcCC
Confidence            46899999999865 343       3455666 556666543

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=96.27  E-value=0.0043  Score=55.88  Aligned_cols=42  Identities=21%  Similarity=0.435  Sum_probs=33.7

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHc--CCcEEEEEecC
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAK--GIDSVICVAVN  120 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~--gv~~vi~IS~d  120 (203)
                      +.+|+.||++||++|... .|.++++.++++..  ++. ++.+..+
T Consensus       365 ~~vlv~f~a~wC~~C~~~-~p~~~~~~~~~~~~~~~i~-~~~id~~  408 (462)
T TIGR01130       365 KDVLVEFYAPWCGHCKNL-APIYEELAEKYKDAESDVV-IAKMDAT  408 (462)
T ss_pred             CeEEEEEECCCCHhHHHH-HHHHHHHHHHhhcCCCcEE-EEEEECC
Confidence            367889999999999998 89999999999863  455 6656543

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=96.23  E-value=0.012  Score=40.93  Aligned_cols=64  Identities=16%  Similarity=0.196  Sum_probs=34.3

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHH--hHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEee
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKN--NIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGD  143 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~--~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD  143 (203)
                      +|| .|++.|.++||+.|..- -..+-.  ...++-.+++. .+-|..++.....++.. .++|  .-++.|
T Consensus        16 ~~k-pvlv~f~a~wC~~C~~l-~~~~~~~~~v~~~~~~~fv-~v~vd~~~~~~~~~~~~-~~~P--~~~~ld   81 (82)
T PF13899_consen   16 EGK-PVLVDFGADWCPPCKKL-EREVFSDPEVQEALNKNFV-LVKVDVDDEDPNAQFDR-QGYP--TFFFLD   81 (82)
T ss_dssp             HTS-EEEEEEETTTTHHHHHH-HHHTTTSHHHHHHHHHCSE-EEEEETTTHHHHHHHHH-CSSS--EEEEEE
T ss_pred             cCC-CEEEEEECCCCHhHHHH-HHHHcCCHHHHHHHHCCEE-EEEEEcCCCChhHHhCC-ccCC--EEEEeC
Confidence            567 56667799999999753 222211  22232234565 66666666544333322 4555  444444

...

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=96.23  E-value=0.0055  Score=56.74  Aligned_cols=81  Identities=19%  Similarity=0.332  Sum_probs=56.5

Q ss_pred             ecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeC-Cc
Q 028808           68 PIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDF-DG  146 (203)
Q Consensus        68 sL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~-~~  146 (203)
                      ++.+...+...+|+-|.|.||..|.+= .|+|.+.+..+++.|=. |--.=+|.... ...+.+++++ .||.+.=. +|
T Consensus        34 nf~~~i~~~~~vlVeFYAPWCghck~L-aPey~kAA~~Lke~~s~-i~LakVDat~~-~~~~~~y~v~-gyPTlkiFrnG  109 (493)
T KOG0190|consen   34 NFKETINGHEFVLVEFYAPWCGHCKAL-APEYEKAATELKEEGSP-VKLAKVDATEE-SDLASKYEVR-GYPTLKIFRNG  109 (493)
T ss_pred             cHHHHhccCceEEEEEEchhhhhhhhh-CcHHHHHHHHhhccCCC-ceeEEeecchh-hhhHhhhcCC-CCCeEEEEecC
Confidence            344444555678899999999999986 99999999999988544 43444555443 7888888886 57665533 44


Q ss_pred             hHHHHc
Q 028808          147 SFHKSL  152 (203)
Q Consensus       147 ~v~~~y  152 (203)
                      .....|
T Consensus       110 ~~~~~Y  115 (493)
T KOG0190|consen  110 RSAQDY  115 (493)
T ss_pred             Ccceec
Confidence            444444

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=96.20  E-value=0.036  Score=40.90  Aligned_cols=19  Identities=11%  Similarity=-0.125  Sum_probs=15.6

Q ss_pred             CCCeEEEEEeeCCCCCCCCc
Q 028808           74 KGKKVVIFGLPGAYTGVCSN   93 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~   93 (203)
                      ++| .|++++.++||+.|..
T Consensus        16 ~~K-~llv~~~~~~c~~c~~   34 (114)
T cd02958          16 EKK-WLLVYLQSEDEFDSQV   34 (114)
T ss_pred             hCc-eEEEEEecCCcchHHH
Confidence            456 6788899999999965

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.88  E-value=0.01  Score=50.41  Aligned_cols=54  Identities=22%  Similarity=0.436  Sum_probs=40.0

Q ss_pred             CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCC
Q 028808           75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAK  135 (203)
Q Consensus        75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~  135 (203)
                      |.+.|++.|.++||.+|..- .|.|+.+..+|.  |.. .+-|.+|   ..+.-+..+|++
T Consensus        20 g~k~v~Vdfta~wCGPCk~I-aP~Fs~lankYp--~aV-FlkVdVd---~c~~taa~~gV~   73 (288)
T KOG0908|consen   20 GGKLVVVDFTASWCGPCKRI-APIFSDLANKYP--GAV-FLKVDVD---ECRGTAATNGVN   73 (288)
T ss_pred             CceEEEEEEEecccchHHhh-hhHHHHhhhhCc--ccE-EEEEeHH---HhhchhhhcCcc
Confidence            33478899999999999998 899999999994  444 5566443   355566666653

>PHA02125 thioredoxin-like protein

Probab=95.87  E-value=0.014  Score=40.02  Aligned_cols=20  Identities=15%  Similarity=0.326  Sum_probs=15.2

Q ss_pred             EEEeeCCCCCCCCccchhhHH
Q 028808           80 IFGLPGAYTGVCSNQHVPSYK  100 (203)
Q Consensus        80 L~~f~~~~cp~C~~ehl~~l~  100 (203)
                      ++.|+++||++|..- .|.|.
T Consensus         2 iv~f~a~wC~~Ck~~-~~~l~   21 (75)
T PHA02125          2 IYLFGAEWCANCKMV-KPMLA   21 (75)
T ss_pred             EEEEECCCCHhHHHH-HHHHH
Confidence            567999999999865 45543

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=95.86  E-value=0.0077  Score=46.39  Aligned_cols=19  Identities=5%  Similarity=-0.195  Sum_probs=15.3

Q ss_pred             CCCeEEEEEeeCCCCCCCCc
Q 028808           74 KGKKVVIFGLPGAYTGVCSN   93 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~   93 (203)
                      +||+ |++.|.++||++|..
T Consensus        22 ~~Kp-vmv~f~sdwC~~Ck~   40 (130)
T cd02960          22 SNKP-LMVIHHLEDCPHSQA   40 (130)
T ss_pred             CCCe-EEEEEeCCcCHhHHH
Confidence            5674 666799999999975

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>smart00594 UAS UAS domain

Probab=95.74  E-value=0.082  Score=39.69  Aligned_cols=20  Identities=5%  Similarity=-0.067  Sum_probs=15.8

Q ss_pred             CCCeEEEEEeeCCCCCCCCcc
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQ   94 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~e   94 (203)
                      ++| .+++.+.+.||+.|..-
T Consensus        26 ~~K-~~lv~~~~~~c~~c~~~   45 (122)
T smart00594       26 QRR-LLWLYLHSQDSPDSQVF   45 (122)
T ss_pred             hcC-CEEEEEeCCCCchHHHH
Confidence            455 67788999999999753

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=95.51  E-value=0.031  Score=46.12  Aligned_cols=19  Identities=16%  Similarity=0.062  Sum_probs=15.5

Q ss_pred             CeEEEEEeeCCCCCCCCcc
Q 028808           76 KKVVIFGLPGAYTGVCSNQ   94 (203)
Q Consensus        76 k~vVL~~f~~~~cp~C~~e   94 (203)
                      +++++..|+++|||+|..-
T Consensus       133 ~pv~I~~F~a~~C~~C~~~  151 (215)
T TIGR02187       133 EPVRIEVFVTPTCPYCPYA  151 (215)
T ss_pred             CCcEEEEEECCCCCCcHHH
Confidence            4677777999999999753

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=95.18  E-value=0.062  Score=40.57  Aligned_cols=40  Identities=10%  Similarity=0.133  Sum_probs=28.7

Q ss_pred             ecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcC
Q 028808           68 PIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKG  110 (203)
Q Consensus        68 sL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~g  110 (203)
                      ++.+..++.+.||+-|.++| |.|-+ | |++.++++++.+..
T Consensus        10 nF~~~v~~~~~vlV~F~A~~-Pwc~k-~-~~~~~LA~e~~~aa   49 (116)
T cd03007          10 TFYKVIPKFKYSLVKFDTAY-PYGEK-H-EAFTRLAESSASAT   49 (116)
T ss_pred             hHHHHHhcCCcEEEEEeCCC-CCCCC-h-HHHHHHHHHHHhhc
Confidence            33443344457888999988 77774 4 99999999997643

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=94.92  E-value=0.052  Score=38.76  Aligned_cols=32  Identities=9%  Similarity=0.097  Sum_probs=21.4

Q ss_pred             ccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHH
Q 028808           70 KDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNID  104 (203)
Q Consensus        70 ~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~  104 (203)
                      .++ ++ ++-+..|.+.|||.|..- .+.++++.+
T Consensus         8 ~~l-~~-pv~i~~F~~~~C~~C~~~-~~~~~~l~~   39 (89)
T cd03026           8 RRL-NG-PINFETYVSLSCHNCPDV-VQALNLMAV   39 (89)
T ss_pred             Hhc-CC-CEEEEEEECCCCCCcHHH-HHHHHHHHH
Confidence            353 54 588888999999999753 344444443

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=94.76  E-value=0.068  Score=47.88  Aligned_cols=64  Identities=19%  Similarity=0.207  Sum_probs=48.0

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCch
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGS  147 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~  147 (203)
                      ...++.|++.||+.|.+- .|.+.++...++.   . +...++|. ..++..++++++. .||-+.-....
T Consensus        48 ~~~~v~fyapwc~~c~~l-~~~~~~~~~~l~~---~-~~~~~vd~-~~~~~~~~~y~i~-gfPtl~~f~~~  111 (383)
T KOG0191|consen   48 SPWLVEFYAPWCGHCKKL-APTYKKLAKALKG---K-VKIGAVDC-DEHKDLCEKYGIQ-GFPTLKVFRPG  111 (383)
T ss_pred             CceEEEEECCCCcchhhh-chHHHHHHHHhcC---c-eEEEEeCc-hhhHHHHHhcCCc-cCcEEEEEcCC
Confidence            356778999999999998 9999988888875   2 44444543 3578899999986 57777665444

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=94.71  E-value=0.13  Score=33.70  Aligned_cols=55  Identities=11%  Similarity=0.013  Sum_probs=31.3

Q ss_pred             EEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCH-HHHHHHHHHhCCCCceEEEeeCC
Q 028808           81 FGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDP-YVMNGWAEKLQAKDVIEFYGDFD  145 (203)
Q Consensus        81 ~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~-~~~~~~~~~~~l~~~fpllsD~~  145 (203)
                      ..|...|||.|..- ...       ++++|+. +..+..+.. .....+.+.++.. .+|.+.+.+
T Consensus         3 ~l~~~~~c~~c~~~-~~~-------l~~~~i~-~~~~~i~~~~~~~~~~~~~~~~~-~vP~i~~~~   58 (73)
T cd02976           3 TVYTKPDCPYCKAT-KRF-------LDERGIP-FEEVDVDEDPEALEELKKLNGYR-SVPVVVIGD   58 (73)
T ss_pred             EEEeCCCChhHHHH-HHH-------HHHCCCC-eEEEeCCCCHHHHHHHHHHcCCc-ccCEEEECC
Confidence            45788999999754 222       3346777 777777643 3233343333332 466666543

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=94.63  E-value=0.018  Score=44.17  Aligned_cols=73  Identities=18%  Similarity=0.214  Sum_probs=38.5

Q ss_pred             EEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccc
Q 028808           78 VVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKD  157 (203)
Q Consensus        78 vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~  157 (203)
                      .-++.+-++|||-|..+ +|.|.+..+.-.  +++ +=-++.|+.                       .++..+|--   
T Consensus        43 ~~ilvi~e~WCgD~~~~-vP~l~kiae~~p--~i~-~~~i~rd~~-----------------------~el~~~~lt---   92 (129)
T PF14595_consen   43 YNILVITETWCGDCARN-VPVLAKIAEANP--NIE-VRIILRDEN-----------------------KELMDQYLT---   92 (129)
T ss_dssp             EEEEEE--TT-HHHHHH-HHHHHHHHHH-T--TEE-EEEE-HHHH-----------------------HHHTTTTTT---
T ss_pred             cEEEEEECCCchhHHHH-HHHHHHHHHhCC--CCe-EEEEEecCC-----------------------hhHHHHHHh---
Confidence            33445789999999999 999999887643  344 444444332                       222222211   


Q ss_pred             cccccCCCCcceEEEEEe-CCEEEEEEee
Q 028808          158 LSAALLGPRSERWSAYVE-DGRIKALNVE  185 (203)
Q Consensus       158 ~~~~g~~~~~~r~tfIId-dG~I~~~~~~  185 (203)
                           .+.++.|+.+++| +|+++.++..
T Consensus        93 -----~g~~~IP~~I~~d~~~~~lg~wge  116 (129)
T PF14595_consen   93 -----NGGRSIPTFIFLDKDGKELGRWGE  116 (129)
T ss_dssp             ------SS--SSEEEEE-TT--EEEEEES
T ss_pred             -----CCCeecCEEEEEcCCCCEeEEEcC
Confidence                 0224678777778 8999988854

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=94.19  E-value=0.1  Score=36.04  Aligned_cols=52  Identities=12%  Similarity=0.034  Sum_probs=32.4

Q ss_pred             EeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEee
Q 028808           82 GLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGD  143 (203)
Q Consensus        82 ~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD  143 (203)
                      .|..+|||.|..-  .      ..++++|+. ...+..+.......+.+..+.. .+|.+..
T Consensus        12 ly~~~~Cp~C~~a--k------~~L~~~gi~-y~~idi~~~~~~~~~~~~~g~~-~vP~i~i   63 (79)
T TIGR02190        12 VFTKPGCPFCAKA--K------ATLKEKGYD-FEEIPLGNDARGRSLRAVTGAT-TVPQVFI   63 (79)
T ss_pred             EEECCCCHhHHHH--H------HHHHHcCCC-cEEEECCCChHHHHHHHHHCCC-CcCeEEE
Confidence            4889999999754  2      223456888 7777776543344555555543 4666654

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>TIGR02180 GRX_euk Glutaredoxin

Probab=94.13  E-value=0.083  Score=36.09  Aligned_cols=56  Identities=9%  Similarity=0.010  Sum_probs=30.5

Q ss_pred             EEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC-HHHHH-HHHHHhCCCCceEEEe
Q 028808           81 FGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND-PYVMN-GWAEKLQAKDVIEFYG  142 (203)
Q Consensus        81 ~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~-~~~~~-~~~~~~~l~~~fplls  142 (203)
                      +.|.++|||.|..- .+.|.++.  +. ..+. ++-|+.++ ....+ .+.+..+.. .+|.+.
T Consensus         2 ~~f~~~~Cp~C~~~-~~~L~~~~--i~-~~~~-~~~v~~~~~~~~~~~~l~~~~g~~-~vP~v~   59 (84)
T TIGR02180         2 VVFSKSYCPYCKKA-KEILAKLN--VK-PAYE-VVELDQLSNGSEIQDYLEEITGQR-TVPNIF   59 (84)
T ss_pred             EEEECCCChhHHHH-HHHHHHcC--CC-CCCE-EEEeeCCCChHHHHHHHHHHhCCC-CCCeEE
Confidence            45889999999876 55555543  11 1155 66666543 22233 344444543 355544

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=92.81  E-value=0.15  Score=44.78  Aligned_cols=72  Identities=17%  Similarity=0.163  Sum_probs=46.5

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcC--CcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeC-CchHHH-Hc
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKG--IDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDF-DGSFHK-SL  152 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~g--v~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~-~~~v~~-~y  152 (203)
                      -+|+++|.++||++-+.= .|-|.+.+++|+++-  -..|+|. +|- ......++++.++ +||-+-=. +|.+++ .|
T Consensus        14 elvfv~FyAdWCrFSq~L-~piF~EAa~~~~~e~P~~kvvwg~-VDc-d~e~~ia~ky~I~-KyPTlKvfrnG~~~~rEY   89 (375)
T KOG0912|consen   14 ELVFVNFYADWCRFSQML-KPIFEEAAAKFKQEFPEGKVVWGK-VDC-DKEDDIADKYHIN-KYPTLKVFRNGEMMKREY   89 (375)
T ss_pred             eEEeeeeehhhchHHHHH-hHHHHHHHHHHHHhCCCcceEEEE-ccc-chhhHHhhhhccc-cCceeeeeeccchhhhhh
Confidence            489999999999999988 799999999998652  1214443 332 1234456666664 46554332 555544 45

>PRK10329 glutaredoxin-like protein; Provisional

Probab=92.43  E-value=0.41  Score=33.42  Aligned_cols=55  Identities=9%  Similarity=-0.029  Sum_probs=33.4

Q ss_pred             EEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCC
Q 028808           81 FGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFD  145 (203)
Q Consensus        81 ~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~  145 (203)
                      ..|-.+|||.|..-        ...++++|+. +--+..+......+..+..+.. .+|++...+
T Consensus         4 ~lYt~~~Cp~C~~a--------k~~L~~~gI~-~~~idi~~~~~~~~~~~~~g~~-~vPvv~i~~   58 (81)
T PRK10329          4 TIYTRNDCVQCHAT--------KRAMESRGFD-FEMINVDRVPEAAETLRAQGFR-QLPVVIAGD   58 (81)
T ss_pred             EEEeCCCCHhHHHH--------HHHHHHCCCc-eEEEECCCCHHHHHHHHHcCCC-CcCEEEECC
Confidence            35788999999643        1234568888 7777776433333333444543 467766544

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=92.38  E-value=0.32  Score=32.73  Aligned_cols=54  Identities=6%  Similarity=-0.001  Sum_probs=32.8

Q ss_pred             EEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeC
Q 028808           81 FGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDF  144 (203)
Q Consensus        81 ~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~  144 (203)
                      ..|-..+||.|..- ..       .++++|+. .--+..+......+..++.|.. .+|++...
T Consensus         2 ~ly~~~~Cp~C~~a-k~-------~L~~~~i~-~~~~di~~~~~~~~~~~~~g~~-~vP~v~~~   55 (72)
T TIGR02194         2 TVYSKNNCVQCKMT-KK-------ALEEHGIA-FEEINIDEQPEAIDYVKAQGFR-QVPVIVAD   55 (72)
T ss_pred             EEEeCCCCHHHHHH-HH-------HHHHCCCc-eEEEECCCCHHHHHHHHHcCCc-ccCEEEEC
Confidence            35888999999754 22       23467887 7667666433344444455653 46766653

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=92.29  E-value=0.36  Score=31.24  Aligned_cols=55  Identities=7%  Similarity=-0.038  Sum_probs=33.0

Q ss_pred             EEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHH-HHHHHHhCCCCceEEEeeCC
Q 028808           81 FGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVM-NGWAEKLQAKDVIEFYGDFD  145 (203)
Q Consensus        81 ~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~-~~~~~~~~l~~~fpllsD~~  145 (203)
                      ..|-..|||.|..- ..       -++++|+. +.-+..+..... ..+.+..+.. .+|.+...+
T Consensus         3 ~ly~~~~Cp~C~~~-~~-------~L~~~~i~-~~~~di~~~~~~~~~l~~~~~~~-~~P~~~~~~   58 (72)
T cd02066           3 VVFSKSTCPYCKRA-KR-------LLESLGIE-FEEIDILEDGELREELKELSGWP-TVPQIFING   58 (72)
T ss_pred             EEEECCCCHHHHHH-HH-------HHHHcCCc-EEEEECCCCHHHHHHHHHHhCCC-CcCEEEECC
Confidence            35788999999754 22       23455677 777776654333 3444445553 477776543

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=92.23  E-value=0.35  Score=40.57  Aligned_cols=34  Identities=29%  Similarity=0.441  Sum_probs=22.6

Q ss_pred             EEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEE
Q 028808           78 VVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICV  117 (203)
Q Consensus        78 vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~I  117 (203)
                      .+|+.|--..||+|.+-| +++.+    +.+.|++ |.-+
T Consensus       109 ~~I~vFtDp~CpyCkkl~-~~l~~----~~~~~v~-v~~~  142 (232)
T PRK10877        109 HVITVFTDITCGYCHKLH-EQMKD----YNALGIT-VRYL  142 (232)
T ss_pred             EEEEEEECCCChHHHHHH-HHHHH----HhcCCeE-EEEE
Confidence            456678889999998763 55443    3446776 5443

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=91.82  E-value=0.46  Score=34.31  Aligned_cols=60  Identities=23%  Similarity=0.308  Sum_probs=31.9

Q ss_pred             cCCCeEEEEEeeC----CCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC-HHHHHHHHHHhCCCCceEEEee
Q 028808           73 FKGKKVVIFGLPG----AYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND-PYVMNGWAEKLQAKDVIEFYGD  143 (203)
Q Consensus        73 ~~gk~vVL~~f~~----~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~-~~~~~~~~~~~~l~~~fpllsD  143 (203)
                      ...++|||+ --+    +|||+|..-        .+-|+++|++ ...+..++ +....+..+..|.+ .+|.+..
T Consensus         9 i~~~~Vvvf-~kg~~~~~~Cp~C~~a--------k~lL~~~~i~-~~~~di~~~~~~~~~l~~~tg~~-tvP~vfi   73 (97)
T TIGR00365         9 IKENPVVLY-MKGTPQFPQCGFSARA--------VQILKACGVP-FAYVNVLEDPEIRQGIKEYSNWP-TIPQLYV   73 (97)
T ss_pred             hccCCEEEE-EccCCCCCCCchHHHH--------HHHHHHcCCC-EEEEECCCCHHHHHHHHHHhCCC-CCCEEEE
Confidence            344556554 333    799999643        2334566787 77777643 33333333333433 3665543

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=91.66  E-value=0.21  Score=32.33  Aligned_cols=52  Identities=13%  Similarity=0.050  Sum_probs=32.0

Q ss_pred             EEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCH-HHHHHHHHHhCCCCceEEEe
Q 028808           81 FGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDP-YVMNGWAEKLQAKDVIEFYG  142 (203)
Q Consensus        81 ~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~-~~~~~~~~~~~l~~~fplls  142 (203)
                      +.|...+||.|..-        .+-|+++|+. .-.+..++. ...++..+..+.. .+|.+.
T Consensus         2 ~vy~~~~C~~C~~~--------~~~L~~~~i~-y~~~dv~~~~~~~~~l~~~~g~~-~~P~v~   54 (60)
T PF00462_consen    2 VVYTKPGCPYCKKA--------KEFLDEKGIP-YEEVDVDEDEEAREELKELSGVR-TVPQVF   54 (60)
T ss_dssp             EEEESTTSHHHHHH--------HHHHHHTTBE-EEEEEGGGSHHHHHHHHHHHSSS-SSSEEE
T ss_pred             EEEEcCCCcCHHHH--------HHHHHHcCCe-eeEcccccchhHHHHHHHHcCCC-ccCEEE
Confidence            45888999999653        2234567887 777777654 3344444444653 466554

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=91.44  E-value=0.18  Score=46.88  Aligned_cols=34  Identities=26%  Similarity=0.546  Sum_probs=29.0

Q ss_pred             CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcC
Q 028808           75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKG  110 (203)
Q Consensus        75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~g  110 (203)
                      +| -||+-|.+.||+.|.+- .|.++++.+.|++..
T Consensus       384 ~K-dVLvEfyAPWCgHCk~l-aP~~eeLAe~~~~~~  417 (493)
T KOG0190|consen  384 GK-DVLVEFYAPWCGHCKAL-APIYEELAEKYKDDE  417 (493)
T ss_pred             cc-ceEEEEcCcccchhhhh-hhHHHHHHHHhcCCC
Confidence            45 46778999999999987 799999999999853

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=91.40  E-value=0.41  Score=32.59  Aligned_cols=54  Identities=11%  Similarity=0.130  Sum_probs=31.4

Q ss_pred             EEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC-HHHHHHHHHHhCCCCceEEEeeC
Q 028808           81 FGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND-PYVMNGWAEKLQAKDVIEFYGDF  144 (203)
Q Consensus        81 ~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~-~~~~~~~~~~~~l~~~fpllsD~  144 (203)
                      ..|...|||.|..- .       ..++++|+. .--+..+. +...+++.+..+.. .+|.+.-.
T Consensus         2 ~ly~~~~Cp~C~~a-~-------~~L~~~~i~-~~~~di~~~~~~~~~~~~~~g~~-~vP~i~i~   56 (79)
T TIGR02181         2 TIYTKPYCPYCTRA-K-------ALLSSKGVT-FTEIRVDGDPALRDEMMQRSGRR-TVPQIFIG   56 (79)
T ss_pred             EEEecCCChhHHHH-H-------HHHHHcCCC-cEEEEecCCHHHHHHHHHHhCCC-CcCEEEEC
Confidence            45889999999754 2       223456776 55555543 34455555555533 46665543

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=91.25  E-value=0.73  Score=30.76  Aligned_cols=54  Identities=11%  Similarity=0.072  Sum_probs=31.5

Q ss_pred             EEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC-HHHHHHHHHHhCCCCceEEEee
Q 028808           81 FGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND-PYVMNGWAEKLQAKDVIEFYGD  143 (203)
Q Consensus        81 ~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~-~~~~~~~~~~~~l~~~fpllsD  143 (203)
                      ..|..++||.|..-        ...++++|+. .--+..+. ++..+++.+..+....+|.+.-
T Consensus         3 ~ly~~~~Cp~C~~a--------k~~L~~~~i~-~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i   57 (75)
T cd03418           3 EIYTKPNCPYCVRA--------KALLDKKGVD-YEEIDVDGDPALREEMINRSGGRRTVPQIFI   57 (75)
T ss_pred             EEEeCCCChHHHHH--------HHHHHHCCCc-EEEEECCCCHHHHHHHHHHhCCCCccCEEEE
Confidence            45788999999653        2234456777 66776654 4444555555443112565543

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=91.06  E-value=0.59  Score=33.11  Aligned_cols=61  Identities=16%  Similarity=0.154  Sum_probs=30.5

Q ss_pred             ccCCCeEEEEEee---CCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC-HHHHHHHHHHhCCCCceEEEe
Q 028808           72 IFKGKKVVIFGLP---GAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND-PYVMNGWAEKLQAKDVIEFYG  142 (203)
Q Consensus        72 l~~gk~vVL~~f~---~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~-~~~~~~~~~~~~l~~~fplls  142 (203)
                      +.+.++|||+.--   ..|||.|..-        .+-++++|+. .-.+..+. +....+..+..|.. .+|.+.
T Consensus         4 ~i~~~~vvvf~k~~~~~~~Cp~C~~a--------k~~L~~~~i~-y~~idv~~~~~~~~~l~~~~g~~-tvP~vf   68 (90)
T cd03028           4 LIKENPVVLFMKGTPEEPRCGFSRKV--------VQILNQLGVD-FGTFDILEDEEVRQGLKEYSNWP-TFPQLY   68 (90)
T ss_pred             hhccCCEEEEEcCCCCCCCCcHHHHH--------HHHHHHcCCC-eEEEEcCCCHHHHHHHHHHhCCC-CCCEEE
Confidence            3456666665332   2588888643        2234456677 66666543 33333333333433 355553

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=90.91  E-value=0.55  Score=31.44  Aligned_cols=31  Identities=10%  Similarity=0.173  Sum_probs=19.9

Q ss_pred             EeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC
Q 028808           82 GLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND  121 (203)
Q Consensus        82 ~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~  121 (203)
                      .|-.+|||.|.+- .       +.++++|+. ..-+..+.
T Consensus         5 lys~~~Cp~C~~a-k-------~~L~~~~i~-~~~~~v~~   35 (72)
T cd03029           5 LFTKPGCPFCARA-K-------AALQENGIS-YEEIPLGK   35 (72)
T ss_pred             EEECCCCHHHHHH-H-------HHHHHcCCC-cEEEECCC
Confidence            4778999999754 2       223456777 66666554

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=90.58  E-value=0.63  Score=32.31  Aligned_cols=37  Identities=8%  Similarity=-0.002  Sum_probs=25.0

Q ss_pred             EEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC
Q 028808           81 FGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND  121 (203)
Q Consensus        81 ~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~  121 (203)
                      ..|..+|||.|..- ...|+++..++  .|+. +.-+..+.
T Consensus         4 ~iy~~~~C~~C~~a-~~~L~~l~~~~--~~i~-~~~idi~~   40 (85)
T PRK11200          4 VIFGRPGCPYCVRA-KELAEKLSEER--DDFD-YRYVDIHA   40 (85)
T ss_pred             EEEeCCCChhHHHH-HHHHHhhcccc--cCCc-EEEEECCC
Confidence            45889999999876 55555555433  4677 77776653

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=90.32  E-value=0.43  Score=42.72  Aligned_cols=53  Identities=13%  Similarity=0.308  Sum_probs=38.5

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHHHH-cCCcEEEEEecCCHHHHHHHHHHhCC
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKA-KGIDSVICVAVNDPYVMNGWAEKLQA  134 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~-~gv~~vi~IS~d~~~~~~~~~~~~~l  134 (203)
                      ...|+.|.+.||+.|..- +|.+.++...++. .++. +..+..+   .....++++++
T Consensus       163 ~~~lv~f~aPwc~~ck~l-~~~~~~~a~~~~~~~~v~-~~~~d~~---~~~~~~~~~~v  216 (383)
T KOG0191|consen  163 ADWLVEFYAPWCGHCKKL-APEWEKLAKLLKSKENVE-LGKIDAT---VHKSLASRLEV  216 (383)
T ss_pred             cceEEEEeccccHHhhhc-ChHHHHHHHHhccCcceE-EEeeccc---hHHHHhhhhcc
Confidence            356677789999999988 8999999999974 4555 6666555   34455555554

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=90.03  E-value=0.25  Score=46.56  Aligned_cols=62  Identities=11%  Similarity=0.193  Sum_probs=45.3

Q ss_pred             EEEEEeeCCCCCCCCccchhhHHHhHHHHHH-cCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEe
Q 028808           78 VVIFGLPGAYTGVCSNQHVPSYKNNIDKFKA-KGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYG  142 (203)
Q Consensus        78 vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~-~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fplls  142 (203)
                      .-|+-|.++||+.|+.- .|.|.++++.++. .++-.|.+|.+-+. .-.+-+++++++ .||.+-
T Consensus        59 ~~lVEFy~swCGhCr~F-APtfk~~A~dl~~W~~vv~vaaVdCA~~-~N~~lCRef~V~-~~Ptlr  121 (606)
T KOG1731|consen   59 AKLVEFYNSWCGHCRAF-APTFKKFAKDLEKWRPVVRVAAVDCADE-ENVKLCREFSVS-GYPTLR  121 (606)
T ss_pred             hHHHHHHHhhhhhhhhc-chHHHHHHHHHhcccceeEEEEeeccch-hhhhhHhhcCCC-CCceee
Confidence            45678999999999998 8999998888764 23333556655443 346789999987 577663

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.96  E-value=0.41  Score=36.40  Aligned_cols=49  Identities=16%  Similarity=0.363  Sum_probs=30.1

Q ss_pred             cccccCCCeEEEEEeeC-------CCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC
Q 028808           69 IKDIFKGKKVVIFGLPG-------AYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN  120 (203)
Q Consensus        69 L~dl~~gk~vVL~~f~~-------~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d  120 (203)
                      ++++-+|+.+++.|+-.       +|||.|.+- .|-+.+..+.+ ..++. +|-+-+.
T Consensus        19 ~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~A-EPvi~~alk~a-p~~~~-~v~v~VG   74 (128)
T KOG3425|consen   19 LKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAA-EPVINEALKHA-PEDVH-FVHVYVG   74 (128)
T ss_pred             HHHHhCCceEEEEEecccCCCCCCcCCchHHHh-hHHHHHHHHhC-CCceE-EEEEEec
Confidence            44433677644443332       499999998 79888876643 34566 6665443

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=89.22  E-value=0.27  Score=37.23  Aligned_cols=45  Identities=18%  Similarity=0.316  Sum_probs=27.7

Q ss_pred             CCCeEEEEEeeC------CCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC
Q 028808           74 KGKKVVIFGLPG------AYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND  121 (203)
Q Consensus        74 ~gk~vVL~~f~~------~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~  121 (203)
                      .|++++|+|+-+      +|||.|+.- .|.+++...... .+.. +|-+.+.+
T Consensus        18 ~~~~~fl~F~gs~d~~g~sWCPDC~~a-ep~v~~~f~~~~-~~~~-lv~v~VG~   68 (119)
T PF06110_consen   18 SGKPLFLLFTGSKDETGQSWCPDCVAA-EPVVEKAFKKAP-ENAR-LVYVEVGD   68 (119)
T ss_dssp             TTSEEEEEEE--B-TTS-BSSHHHHHH-HHHHHHHHHH-S-TTEE-EEEEE---
T ss_pred             CCCeEEEEEEccCCCCCCcccHHHHHH-HHHHHHHHHhCC-CCce-EEEEEcCC
Confidence            456666665532      499999998 898888776633 3555 66666654

; PDB: 1V9W_A 1WOU_A.

>PHA03050 glutaredoxin; Provisional

Probab=88.61  E-value=1.1  Score=33.03  Aligned_cols=20  Identities=20%  Similarity=0.213  Sum_probs=13.6

Q ss_pred             cCCCeEEEEEeeCCCCCCCCcc
Q 028808           73 FKGKKVVIFGLPGAYTGVCSNQ   94 (203)
Q Consensus        73 ~~gk~vVL~~f~~~~cp~C~~e   94 (203)
                      ...++++  .|-.+|||+|..-
T Consensus        10 i~~~~V~--vys~~~CPyC~~a   29 (108)
T PHA03050         10 LANNKVT--IFVKFTCPFCRNA   29 (108)
T ss_pred             hccCCEE--EEECCCChHHHHH
Confidence            3444444  3789999999753

>PF13778 DUF4174: Domain of unknown function (DUF4174)

Probab=88.59  E-value=0.44  Score=35.82  Aligned_cols=92  Identities=16%  Similarity=0.148  Sum_probs=54.8

Q ss_pred             cccccCCC-eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCch
Q 028808           69 IKDIFKGK-KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGS  147 (203)
Q Consensus        69 L~dl~~gk-~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~  147 (203)
                      |++ ++++ ++||+|-|..--+.-..| +..|.+....+.++.+. ++.+..+......     ..+.      .+....
T Consensus         3 L~~-~~w~~R~lvv~aps~~d~~~~~q-~~~L~~~~~~l~eRdi~-v~~i~~~~~~~~~-----~~~~------~~~~~~   68 (118)
T PF13778_consen    3 LDQ-FRWKNRLLVVFAPSADDPRYQQQ-LEELQNNRCGLDERDIV-VIVITGDGARSPG-----KPLS------PEDIQA   68 (118)
T ss_pred             hhH-hcCcCceEEEECCCCCCHHHHHH-HHHHHhhhhccccCceE-EEEEeCCcccccc-----CcCC------HHHHHH
Confidence            455 3444 577777777766666666 77777777788888776 7777444322111     0010      012345


Q ss_pred             HHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEe
Q 028808          148 FHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNV  184 (203)
Q Consensus       148 v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~  184 (203)
                      +-+.|++...          .-+.++|+ ||.|...+-
T Consensus        69 lr~~l~~~~~----------~f~~vLiGKDG~vK~r~~   96 (118)
T PF13778_consen   69 LRKRLRIPPG----------GFTVVLIGKDGGVKLRWP   96 (118)
T ss_pred             HHHHhCCCCC----------ceEEEEEeCCCcEEEecC
Confidence            6667776521          12368889 999998853

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=88.15  E-value=1.6  Score=29.24  Aligned_cols=53  Identities=11%  Similarity=0.013  Sum_probs=31.4

Q ss_pred             EeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC-HHHHHHHHHHhCCCCceEEEeeC
Q 028808           82 GLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND-PYVMNGWAEKLQAKDVIEFYGDF  144 (203)
Q Consensus        82 ~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~-~~~~~~~~~~~~l~~~fpllsD~  144 (203)
                      .|-.++||.|.+-        ..-++++|+. .--+..+. +....++.+..+.. .+|.+.-.
T Consensus         5 ly~~~~C~~C~ka--------~~~L~~~gi~-~~~~di~~~~~~~~el~~~~g~~-~vP~v~i~   58 (73)
T cd03027           5 IYSRLGCEDCTAV--------RLFLREKGLP-YVEINIDIFPERKAELEERTGSS-VVPQIFFN   58 (73)
T ss_pred             EEecCCChhHHHH--------HHHHHHCCCc-eEEEECCCCHHHHHHHHHHhCCC-CcCEEEEC
Confidence            3666899999754        2234467887 77777654 34444555555543 36665443

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>PRK10638 glutaredoxin 3; Provisional

Probab=88.08  E-value=1.1  Score=30.87  Aligned_cols=52  Identities=8%  Similarity=0.027  Sum_probs=32.1

Q ss_pred             EeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCH-HHHHHHHHHhCCCCceEEEee
Q 028808           82 GLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDP-YVMNGWAEKLQAKDVIEFYGD  143 (203)
Q Consensus        82 ~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~-~~~~~~~~~~~l~~~fpllsD  143 (203)
                      .|-..|||.|..-        ..-++++|+. .-.+..+.. ....++.+..+.. .+|.+..
T Consensus         6 ly~~~~Cp~C~~a--------~~~L~~~gi~-y~~~dv~~~~~~~~~l~~~~g~~-~vP~i~~   58 (83)
T PRK10638          6 IYTKATCPFCHRA--------KALLNSKGVS-FQEIPIDGDAAKREEMIKRSGRT-TVPQIFI   58 (83)
T ss_pred             EEECCCChhHHHH--------HHHHHHcCCC-cEEEECCCCHHHHHHHHHHhCCC-CcCEEEE
Confidence            4678999999643        2234456777 666666543 3445566666654 5777744

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=85.93  E-value=2.3  Score=29.59  Aligned_cols=55  Identities=9%  Similarity=0.002  Sum_probs=30.6

Q ss_pred             EeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEe--cCCHHHHHHHHHHh-CCCCceEEEeeCCc
Q 028808           82 GLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVA--VNDPYVMNGWAEKL-QAKDVIEFYGDFDG  146 (203)
Q Consensus        82 ~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS--~d~~~~~~~~~~~~-~l~~~fpllsD~~~  146 (203)
                      .|-.++||+|.+-  ..      -+.++|++ ..-|-  .++....+.++++. |.. .+|.+...+.
T Consensus         5 iyt~~~CPyC~~a--k~------~L~~~g~~-~~~i~~~~~~~~~~~~~~~~~~g~~-tvP~I~i~~~   62 (80)
T COG0695           5 IYTKPGCPYCKRA--KR------LLDRKGVD-YEEIDVDDDEPEEAREMVKRGKGQR-TVPQIFIGGK   62 (80)
T ss_pred             EEECCCCchHHHH--HH------HHHHcCCC-cEEEEecCCcHHHHHHHHHHhCCCC-CcCEEEECCE
Confidence            3666789999753  22      23367777 44433  33433555666666 443 4666655443

>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products

Probab=85.10  E-value=1.4  Score=35.13  Aligned_cols=110  Identities=12%  Similarity=0.222  Sum_probs=56.6

Q ss_pred             cccccCCCccccCCCceEEeccccccCCCCCCceeeeccccc--CCCeEEEEEeeCCCCCCCCccchhhHHHhHH-----
Q 028808           32 YASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIF--KGKKVVIFGLPGAYTGVCSNQHVPSYKNNID-----  104 (203)
Q Consensus        32 ~~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~--~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~-----  104 (203)
                      ...+.+|..+    |+..+....   +|     +++.|.+.+  .|++-|++|-...-.+.+... +..|.+..+     
T Consensus        27 a~~l~~G~Rl----p~~~v~r~a---D~-----~p~~l~~~l~sdGrfri~vFagd~~~~~~~~~-l~~l~~~L~~~~s~   93 (169)
T PF07976_consen   27 AGGLRPGRRL----PSAKVVRHA---DG-----NPVHLQDDLPSDGRFRILVFAGDISLPEQLSR-LSALADYLESPSSF   93 (169)
T ss_dssp             BTTS-TTCB--------EEEETT---TT-----EEEEGGGG--SSS-EEEEEEEETTTTCHCCCH-HHHHHHHHHSTTSH
T ss_pred             ccCcCCcccc----CCceEEEEc---CC-----CChhHhhhcccCCCEEEEEEeCCCccchhHHH-HHHHHHHHHhcchH
Confidence            3579999996    999998753   23     899999866  488888775555545444433 444444332     


Q ss_pred             --HHHHcC------CcEEEEEecCC---------HHHHHHHHHHhCCCCceEEEeeC------CchHHHHcCCcc
Q 028808          105 --KFKAKG------IDSVICVAVND---------PYVMNGWAEKLQAKDVIEFYGDF------DGSFHKSLDLGK  156 (203)
Q Consensus       105 --~f~~~g------v~~vi~IS~d~---------~~~~~~~~~~~~l~~~fpllsD~------~~~v~~~yGv~~  156 (203)
                        +|...+      ++ ++.|...+         |+..+.+..++++. ...+++|.      .+..-+.|||..
T Consensus        94 ~~r~~~~~~~~~s~~~-~~~I~~~~~~~~e~~dlP~~~~p~~~~~~~~-~~~vy~Dd~~~~~~~g~~y~~~Gid~  166 (169)
T PF07976_consen   94 LSRFTPKDRDPDSVFD-VLLIHSSPRDEVELFDLPEIFRPFDGKRGWD-YWKVYVDDESYHSGHGDAYEKYGIDR  166 (169)
T ss_dssp             HHHHSBTTS-TTSSEE-EEEEESS-CCCS-GGGS-CCCS-EETTTTC---SSEEE-S-SSSSTT--HHHHCTBBT
T ss_pred             HHhcCCCCCCCCCeeE-EEEEecCCCCceeHHHCcHhhCcccCCCCcc-ceeEEecCcccccCcccHHHhhCCCc
Confidence              333222      55 77776542         12233444445543 35666664      467778888753

The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=83.38  E-value=1.8  Score=29.26  Aligned_cols=56  Identities=9%  Similarity=-0.039  Sum_probs=28.3

Q ss_pred             EEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCH-HHHHH-HHHHhCCCCceEEEeeC
Q 028808           81 FGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDP-YVMNG-WAEKLQAKDVIEFYGDF  144 (203)
Q Consensus        81 ~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~-~~~~~-~~~~~~l~~~fpllsD~  144 (203)
                      +.|-..|||.|..- -..|.++..     .+. .+=+..++. ...+. ..+..+.+ .+|.+...
T Consensus         3 ~~y~~~~Cp~C~~~-~~~l~~~~~-----~~~-~~~v~~~~~~~~~~~~~~~~~g~~-~~P~v~~~   60 (82)
T cd03419           3 VVFSKSYCPYCKRA-KSLLKELGV-----KPA-VVELDQHEDGSEIQDYLQELTGQR-TVPNVFIG   60 (82)
T ss_pred             EEEEcCCCHHHHHH-HHHHHHcCC-----CcE-EEEEeCCCChHHHHHHHHHHhCCC-CCCeEEEC
Confidence            45778999999753 233333211     233 555555432 23333 33444554 47776543

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=83.38  E-value=4.8  Score=31.01  Aligned_cols=34  Identities=3%  Similarity=-0.083  Sum_probs=26.6

Q ss_pred             eeCCchHHHHcCCccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          142 GDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       142 sD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      .|.+.+++..||+..           .|+.++..||+++...++.
T Consensus        77 iD~~~~LA~~fgV~s-----------iPTLl~FkdGk~v~~i~G~  110 (132)
T PRK11509         77 LEQSEAIGDRFGVFR-----------FPATLVFTGGNYRGVLNGI  110 (132)
T ss_pred             CCCCHHHHHHcCCcc-----------CCEEEEEECCEEEEEEeCc
Confidence            356788999999953           5766777899999998764

>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]

Probab=83.13  E-value=6.1  Score=31.85  Aligned_cols=68  Identities=24%  Similarity=0.237  Sum_probs=49.0

Q ss_pred             eeccccc-CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCC
Q 028808           67 TPIKDIF-KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAK  135 (203)
Q Consensus        67 vsL~dl~-~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~  135 (203)
                      ++...|. .|-+.|++.+=.+--|-=..+-.|++.+..++.+++|.. ++.+|-++......|+++++++
T Consensus        18 i~~~~L~~~Gikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi~-v~vvSNn~e~RV~~~~~~l~v~   86 (175)
T COG2179          18 ITPDILKAHGIKGVILDLDNTLVPWDNPDATPELRAWLAELKEAGIK-VVVVSNNKESRVARAAEKLGVP   86 (175)
T ss_pred             CCHHHHHHcCCcEEEEeccCceecccCCCCCHHHHHHHHHHHhcCCE-EEEEeCCCHHHHHhhhhhcCCc
Confidence            4444432 355566666544433333333368899999999999999 9999999999999999999975

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=82.94  E-value=1.6  Score=31.59  Aligned_cols=36  Identities=17%  Similarity=0.264  Sum_probs=21.6

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN  120 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d  120 (203)
                      +..+++|  |-.+|||.|.+-  ..      -+.+.|+. .-.+..|
T Consensus         6 ~~~~Vvv--ysk~~Cp~C~~a--k~------~L~~~~i~-~~~vdid   41 (99)
T TIGR02189         6 SEKAVVI--FSRSSCCMCHVV--KR------LLLTLGVN-PAVHEID   41 (99)
T ss_pred             ccCCEEE--EECCCCHHHHHH--HH------HHHHcCCC-CEEEEcC
Confidence            3344544  677999999753  32      23455676 5566665

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=81.50  E-value=2.7  Score=31.17  Aligned_cols=76  Identities=7%  Similarity=0.093  Sum_probs=41.9

Q ss_pred             EEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccc
Q 028808           78 VVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKD  157 (203)
Q Consensus        78 vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~  157 (203)
                      .+++|=-++.||.-..- +.+|++.++...+. +. ++-+-+-.-         .          |-...+++.|||.-+
T Consensus        21 ~~~iFKHSt~C~IS~~a-~~~~e~~~~~~~~~-~~-~y~l~v~~~---------R----------~vSn~IAe~~~V~He   78 (105)
T PF11009_consen   21 PVLIFKHSTRCPISAMA-LREFEKFWEESPDE-IP-VYYLDVIEY---------R----------PVSNAIAEDFGVKHE   78 (105)
T ss_dssp             EEEEEEE-TT-HHHHHH-HHHHHHHHHHHT------EEEEEGGGG---------H----------HHHHHHHHHHT----
T ss_pred             cEEEEEeCCCChhhHHH-HHHHHHHhhcCCcc-ce-EEEEEEEeC---------c----------hhHHHHHHHhCCCcC
Confidence            45566667778776655 56666666655443 55 555533221         0          124568888888754


Q ss_pred             cccccCCCCcceEEEEEeCCEEEEEEee
Q 028808          158 LSAALLGPRSERWSAYVEDGRIKALNVE  185 (203)
Q Consensus       158 ~~~~g~~~~~~r~tfIIddG~I~~~~~~  185 (203)
                                -|..++|.||+++|-.-.
T Consensus        79 ----------SPQ~ili~~g~~v~~aSH   96 (105)
T PF11009_consen   79 ----------SPQVILIKNGKVVWHASH   96 (105)
T ss_dssp             ----------SSEEEEEETTEEEEEEEG
T ss_pred             ----------CCcEEEEECCEEEEECcc
Confidence                      266889999999997543

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes

Probab=80.47  E-value=2.3  Score=31.43  Aligned_cols=66  Identities=9%  Similarity=-0.012  Sum_probs=44.9

Q ss_pred             EEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEec--CC--HHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCc
Q 028808           80 IFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAV--ND--PYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLG  155 (203)
Q Consensus        80 L~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~--d~--~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~  155 (203)
                      +..|...+|+.|.+-        .+.|+++|+. +-.+..  +.  ...+++|.+..+..  +.-+....+...+.++..
T Consensus         2 i~iY~~~~C~~c~ka--------~~~L~~~gi~-~~~idi~~~~~~~~el~~~~~~~~~~--~~~l~n~~~~~~k~l~~~   70 (115)
T cd03032           2 IKLYTSPSCSSCRKA--------KQWLEEHQIP-FEERNLFKQPLTKEELKEILSLTENG--VEDIISTRSKAFKNLNID   70 (115)
T ss_pred             EEEEeCCCCHHHHHH--------HHHHHHCCCc-eEEEecCCCcchHHHHHHHHHHhcCC--HHHHHhcCcHHHHHcCCC
Confidence            346888999999765        2345567777 666655  22  35788999988664  554556777888887764


Q ss_pred             c
Q 028808          156 K  156 (203)
Q Consensus       156 ~  156 (203)
                      .
T Consensus        71 ~   71 (115)
T cd03032          71 I   71 (115)
T ss_pred             c
Confidence            3

It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=80.26  E-value=2  Score=40.77  Aligned_cols=55  Identities=11%  Similarity=0.271  Sum_probs=28.9

Q ss_pred             EEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEE--ecCCHHHHHHHHHHhCC
Q 028808           78 VVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICV--AVNDPYVMNGWAEKLQA  134 (203)
Q Consensus        78 vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~I--S~d~~~~~~~~~~~~~l  134 (203)
                      .|+++|.++||-.|..-.--.|.+....++-.|+. .+=.  +.||+ .+.+..++++.
T Consensus       476 pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~v-lLqaDvT~~~p-~~~~lLk~~~~  532 (569)
T COG4232         476 PVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVV-LLQADVTANDP-AITALLKRLGV  532 (569)
T ss_pred             cEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeE-EEEeeecCCCH-HHHHHHHHcCC
Confidence            67889999999999742011223344444444443 3322  22333 34455555543

>PTZ00062 glutaredoxin; Provisional

Probab=80.24  E-value=3.7  Score=33.91  Aligned_cols=64  Identities=8%  Similarity=0.129  Sum_probs=28.6

Q ss_pred             cccccCCCeEEEEEe---eCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC-HHHHHHHHHHhCCCCceEEEe
Q 028808           69 IKDIFKGKKVVIFGL---PGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND-PYVMNGWAEKLQAKDVIEFYG  142 (203)
Q Consensus        69 L~dl~~gk~vVL~~f---~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~-~~~~~~~~~~~~l~~~fplls  142 (203)
                      +.++...+++||+.=   ...+||+|.+-        .+-|+++|+. ..-+..++ ........+..+.+ .+|.+.
T Consensus       106 v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~--------k~~L~~~~i~-y~~~DI~~d~~~~~~l~~~sg~~-TvPqVf  173 (204)
T PTZ00062        106 IERLIRNHKILLFMKGSKTFPFCRFSNAV--------VNMLNSSGVK-YETYNIFEDPDLREELKVYSNWP-TYPQLY  173 (204)
T ss_pred             HHHHHhcCCEEEEEccCCCCCCChhHHHH--------HHHHHHcCCC-EEEEEcCCCHHHHHHHHHHhCCC-CCCeEE
Confidence            344444455555433   22467766532        1223455666 55555543 33333333333443 355443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	203
2pwj_A	171	Structure Of A Mitochondrial Type Ii Peroxiredoxin		3e-78
3uma_A	184	Crystal Structure Of A Hypothetical Peroxiredoxin P		6e-28
4f82_A	176	X-Ray Crystal Structure Of A Putative Thioredoxin R		5e-27
1tp9_A	162	Prx D (Type Ii) From Populus Tremula Length = 162		9e-23
2wfc_A	167	Crystal Structure Of Peroxiredoxin 5 From Arenicola		2e-22
3mng_A	173	Wild Type Human Prxv With Dtt Bound As A Competitiv		1e-20
1oc3_A	172	Human Peroxiredoxin 5 Length = 172		1e-20
1hd2_A	161	Human Peroxiredoxin 5 Length = 161		1e-20
2vl2_A	172	Oxidized And Reduced Forms Of Human Peroxiredoxin 5		2e-20
2xhf_A	171	Crystal Structure Of Peroxiredoxin 5 From Alvinella		8e-20
2vl9_A	173	Oxidized Form Of Human Peroxiredoxin 5 Length = 173		2e-19
1urm_A	172	Human Peroxiredoxin 5, C47s Mutant Length = 172		3e-19
1nm3_A	241	Crystal Structure Of Heamophilus Influenza Hybrid-p		2e-15
1xiy_A	182	Crystal Structure Of Plasmodium Falciparum Antioxid		2e-13
4dsq_A	184	Crystal Structure Of Peroxiredoxin Ahp1 From Saccha		6e-13
4h86_A	199	Crystal Structure Of Ahp1 From Saccharomyces Cerevi		7e-13
4dss_A	176	Crystal Structure Of Peroxiredoxin Ahp1 From Saccha		1e-11

>pdb|2PWJ|A Chain A, Structure Of A Mitochondrial Type Ii Peroxiredoxin From Pisum Sativum Length = 171

Iteration: 1
 Score =  287 bits (734), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 134/171 (78%), Positives = 152/171 (88%)
Query: 33  ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCS 92
           A VA G+DI+SAA +VSLQKARTWDEGV S F+TTP+ DIFK KKVVIFGLPGAYTGVCS
Sbjct: 1   AKVATGTDILSAASNVSLQKARTWDEGVESKFSTTPVNDIFKDKKVVIFGLPGAYTGVCS 60
Query: 93  NQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSL 152
           ++HVP YK+NIDKFKAKG+DSVICVA+NDPY +N WAEK+QAKD IEFYGDFDGSFHKSL
Sbjct: 61  SKHVPPYKHNIDKFKAKGVDSVICVAINDPYTVNAWAEKIQAKDAIEFYGDFDGSFHKSL 120
Query: 153 DLGKDLSAALLGPRSERWSAYVEDGRIKALNVEEAPSKMKVSGGDVILGQI 203
           +L  DLSA LLG RSERWSAYV DG++KALNVEE+PS +KVSG + ILGQI
Sbjct: 121 ELTTDLSAGLLGIRSERWSAYVVDGKVKALNVEESPSDVKVSGAETILGQI 171

>pdb|3UMA|A Chain A, Crystal Structure Of A Hypothetical Peroxiredoxin Protein Frm Sinorhizobium Meliloti Length = 184

Iteration: 1
 Score =  120 bits (301), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 58/129 (44%), Positives = 79/129 (61%)
Query: 72  IFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEK 131
           +FKGK+VV+F +PGA+T  CS  H+P Y  N D   A+G+D +  VAVND +V   WA  
Sbjct: 53  LFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIAVVAVNDLHVXGAWATH 112
Query: 132 LQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEEAPSKM 191
                 I F  D++ +F K++    DLSA  LG RS+R+S  VEDG +KALN+EE+P + 
Sbjct: 113 SGGXGKIHFLSDWNAAFTKAIGXEIDLSAGTLGIRSKRYSXLVEDGVVKALNIEESPGQA 172
Query: 192 KVSGGDVIL 200
             SG    L
Sbjct: 173 TASGAAAXL 181

>pdb|4F82|A Chain A, X-Ray Crystal Structure Of A Putative Thioredoxin Reductase From Burkholderia Cenocepacia Length = 176

Iteration: 1
 Score =  117 bits (292), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 58/146 (39%), Positives = 83/146 (56%), Gaps = 1/146 (0%)
Query: 58  EGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICV 117
           EG +       ++D   GK+VVIFGLPGA+T  CS QHVP Y  + ++ +A GID + CV
Sbjct: 30  EGCTLGPNACSVRDQVAGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAAGIDEIWCV 89
Query: 118 AVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDG 177
           +VND +VM  W   L     +    D   +F  +L L +DLSA  +G RS R++  ++ G
Sbjct: 90  SVNDAFVMGAWGRDLHTAGKVRMMADGSAAFTHALGLTQDLSARGMGIRSLRYAMVIDGG 149
Query: 178 RIKALNVEEAPSKMKVSGGDVILGQI 203
            +K L V EAP K +VS    +L  +
Sbjct: 150 VVKTLAV-EAPGKFEVSDAASVLATL 174

>pdb|1TP9|A Chain A, Prx D (Type Ii) From Populus Tremula Length = 162

Iteration: 1
 Score =  103 bits (256), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 72/117 (61%)
Query: 69  IKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGW 128
           +  +  GKKV++FG+PGA+T  CS +HVP +     + K+KG+  ++C++VNDP+VM  W
Sbjct: 29  VHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDPFVMKAW 88
Query: 129 AEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVE 185
           A+       ++F  D   ++  +L L  DL    LG RS R++  V+D ++KA N+E
Sbjct: 89  AKSYPENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVDDLKVKAANIE 145

>pdb|2WFC|A Chain A, Crystal Structure Of Peroxiredoxin 5 From Arenicola Marina Length = 167

Iteration: 1
 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 54/145 (37%), Positives = 80/145 (55%), Gaps = 5/145 (3%)
Query: 64  FATTP-----IKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVA 118
           F  TP     + ++F GKK V+F +PGA+T   S  H+P Y         KG+D + C+A
Sbjct: 15  FGATPNDKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMA 74
Query: 119 VNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGR 178
           VND +VM+ W +   A D ++   D  G+F K++D+  DLSA L   RS+R+S  +EDG 
Sbjct: 75  VNDSFVMDAWGKAHGADDKVQMLADPGGAFTKAVDMELDLSAVLGNVRSKRYSLVIEDGV 134
Query: 179 IKALNVEEAPSKMKVSGGDVILGQI 203
           +  +NVE     +  S    IL Q+
Sbjct: 135 VTKVNVEPDGKGLTCSLAPNILSQL 159

>pdb|3MNG|A Chain A, Wild Type Human Prxv With Dtt Bound As A Competitive Inhibitor Length = 173

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 79/137 (57%), Gaps = 2/137 (1%)
Query: 69  IKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGW 128
           + ++FKGKK V+FG+PGA+T  CS  H+P +    +  KAKG+  V C++VND +V   W
Sbjct: 37  LAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEW 96
Query: 129 AEKLQAKDVIEFYGDFDGSFHKSLDLGKDLS-AALLGPRS-ERWSAYVEDGRIKALNVEE 186
               +A+  +    D  G+F K  DL  D S  ++ G R  +R+S  V+DG +KALNVE 
Sbjct: 97  GRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEP 156
Query: 187 APSKMKVSGGDVILGQI 203
             + +  S    I+ Q+
Sbjct: 157 DGTGLTCSLAPNIISQL 173

>pdb|1OC3|A Chain A, Human Peroxiredoxin 5 Length = 172

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 79/137 (57%), Gaps = 2/137 (1%)
Query: 69  IKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGW 128
           + ++FKGKK V+FG+PGA+T  CS  H+P +    +  KAKG+  V C++VND +V   W
Sbjct: 36  LAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEW 95
Query: 129 AEKLQAKDVIEFYGDFDGSFHKSLDLGKDLS-AALLGPRS-ERWSAYVEDGRIKALNVEE 186
               +A+  +    D  G+F K  DL  D S  ++ G R  +R+S  V+DG +KALNVE 
Sbjct: 96  GRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEP 155
Query: 187 APSKMKVSGGDVILGQI 203
             + +  S    I+ Q+
Sbjct: 156 DGTGLTCSLAPNIISQL 172

>pdb|1HD2|A Chain A, Human Peroxiredoxin 5 Length = 161

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 79/137 (57%), Gaps = 2/137 (1%)
Query: 69  IKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGW 128
           + ++FKGKK V+FG+PGA+T  CS  H+P +    +  KAKG+  V C++VND +V   W
Sbjct: 25  LAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEW 84
Query: 129 AEKLQAKDVIEFYGDFDGSFHKSLDLGKDLS-AALLGPRS-ERWSAYVEDGRIKALNVEE 186
               +A+  +    D  G+F K  DL  D S  ++ G R  +R+S  V+DG +KALNVE 
Sbjct: 85  GRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEP 144
Query: 187 APSKMKVSGGDVILGQI 203
             + +  S    I+ Q+
Sbjct: 145 DGTGLTCSLAPNIISQL 161

>pdb|2VL2|A Chain A, Oxidized And Reduced Forms Of Human Peroxiredoxin 5 Length = 172

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 79/137 (57%), Gaps = 2/137 (1%)
Query: 69  IKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGW 128
           + ++FKGKK V+FG+PGA+T  CS  H+P +    +  KAKG+  V C++VND +V   W
Sbjct: 36  LAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEW 95
Query: 129 AEKLQAKDVIEFYGDFDGSFHKSLDLGKDLS-AALLGPRS-ERWSAYVEDGRIKALNVEE 186
               +A+  +    D  G+F K  DL  D S  ++ G R  +R+S  V+DG +KALNVE 
Sbjct: 96  GRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEP 155
Query: 187 APSKMKVSGGDVILGQI 203
             + +  S    I+ Q+
Sbjct: 156 DGTGLTXSLAPNIISQL 172

>pdb|2XHF|A Chain A, Crystal Structure Of Peroxiredoxin 5 From Alvinella Pompejana Length = 171

Iteration: 1
 Score = 93.2 bits (230), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 70/118 (59%), Gaps = 1/118 (0%)
Query: 68  PIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNG 127
           PI D+F+G+K ++F + GA+    SN H+P Y +  DKFK +G  ++ C+AVNDP+VM  
Sbjct: 35  PIHDVFRGRKGILFSVVGAFVP-GSNNHIPEYLSLYDKFKEEGYHTIACIAVNDPFVMAA 93
Query: 128 WAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVE 185
           W + +  +  I    D  G F ++L    D S  L   RS R++  ++D +I++++ E
Sbjct: 94  WGKTVDPEHKIRMLADMHGEFTRALGTELDSSKMLGNNRSRRYAMLIDDNKIRSVSTE 151

>pdb|2VL9|A Chain A, Oxidized Form Of Human Peroxiredoxin 5 Length = 173

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 78/137 (56%), Gaps = 2/137 (1%)
Query: 69  IKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGW 128
           + ++FKGKK V+FG+PGA+T  CS  H+P +    +  KAKG+  V  ++VND +V   W
Sbjct: 37  LAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVASLSVNDAFVTGEW 96
Query: 129 AEKLQAKDVIEFYGDFDGSFHKSLDLGKDLS-AALLGPRS-ERWSAYVEDGRIKALNVEE 186
               +A+  +    D  G+F K  DL  D S  ++ G R  +R+S  V+DG +KALNVE 
Sbjct: 97  GRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEP 156
Query: 187 APSKMKVSGGDVILGQI 203
             + +  S    I+ Q+
Sbjct: 157 DGTGLTCSLAPNIISQL 173

>pdb|1URM|A Chain A, Human Peroxiredoxin 5, C47s Mutant Length = 172

Iteration: 1
 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 78/137 (56%), Gaps = 2/137 (1%)
Query: 69  IKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGW 128
           + ++FKGKK V+FG+PGA+T   S  H+P +    +  KAKG+  V C++VND +V   W
Sbjct: 36  LAELFKGKKGVLFGVPGAFTPGSSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEW 95
Query: 129 AEKLQAKDVIEFYGDFDGSFHKSLDLGKDLS-AALLGPRS-ERWSAYVEDGRIKALNVEE 186
               +A+  +    D  G+F K  DL  D S  ++ G R  +R+S  V+DG +KALNVE 
Sbjct: 96  GRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEP 155
Query: 187 APSKMKVSGGDVILGQI 203
             + +  S    I+ Q+
Sbjct: 156 DGTGLTCSLAPNIISQL 172

>pdb|1NM3|A Chain A, Crystal Structure Of Heamophilus Influenza Hybrid-prx5 Length = 241

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 74/135 (54%), Gaps = 9/135 (6%)
Query: 71  DIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAE 130
           ++F  K V++F LPGA+T  CS+ H+P Y      FK  G+D ++ V+VND +V N W E
Sbjct: 29  ELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVXNAWKE 88
Query: 131 KLQAKDVIEFYGDFDGSFHKSLD--LGK-DLSAALLGPRSERWSAYVEDGRIKALNVE-- 185
             ++++ I F  D +G F +     +GK DL     G RS R+S  V++G ++   +E  
Sbjct: 89  DEKSEN-ISFIPDGNGEFTEGXGXLVGKEDLG---FGKRSWRYSXLVKNGVVEKXFIEPN 144
Query: 186 EAPSKMKVSGGDVIL 200
           E     KVS  D  L
Sbjct: 145 EPGDPFKVSDADTXL 159

>pdb|1XIY|A Chain A, Crystal Structure Of Plasmodium Falciparum Antioxidant Protein (1-Cys Peroxiredoxin) Length = 182

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Query: 58  EGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKF-KAKGIDSVIC 116
           +G  ++F +    ++F  KK+++  LPGA+T   S + +P Y+   D F K    D + C
Sbjct: 26  DGSPNDFTSIDTHELFNNKKILLISLPGAFTPTXSTKMIPGYEEEYDYFIKENNFDDIYC 85
Query: 117 VAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVED 176
           +  ND YV+  W + +  K  I++  D + SF  S+++  D S   +G R  R+ A VE+
Sbjct: 86  ITNNDIYVLKSWFKSMDIKK-IKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVEN 144
Query: 177 G 177
Sbjct: 145 N 145

>pdb|4DSQ|A Chain A, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces Cerevisiae In Oxidized Form Length = 184

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 6/138 (4%)
Query: 70  KDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKF-KAKGIDSVICVAVNDPYVMNGW 128
           K I + KKV+I G P A++  C+  H+P Y N +D+  K K +D VI V V++P+    W
Sbjct: 49  KLISENKKVIITGAPAAFSPTCTVSHIPGYINYLDELVKEKEVDQVIVVTVDNPFANQAW 108
Query: 129 AEKLQAKDV--IEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEE 186
           A+ L  KD   I+F  D   +F KS  +G +L+       S RW+  VE+G +     E 
Sbjct: 109 AKSLGVKDTTHIKFASDPGCAFTKS--IGFELAVGDGVYWSGRWAMVVENGIVTYAAKET 166
Query: 187 AP-SKMKVSGGDVILGQI 203
            P + + VS  + +L  +
Sbjct: 167 NPGTDVTVSSVESVLAHL 184

>pdb|4H86|A Chain A, Crystal Structure Of Ahp1 From Saccharomyces Cerevisiae In Reduced Form Length = 199

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 6/138 (4%)
Query: 70  KDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKF-KAKGIDSVICVAVNDPYVMNGW 128
           K I + KKV+I G P A++  C+  H+P Y N +D+  K K +D VI V V++P+    W
Sbjct: 64  KLISENKKVIITGAPAAFSPTCTVSHIPGYINYLDELVKEKEVDQVIVVTVDNPFANQAW 123
Query: 129 AEKLQAKDV--IEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEE 186
           A+ L  KD   I+F  D   +F KS  +G +L+       S RW+  VE+G +     E 
Sbjct: 124 AKSLGVKDTTHIKFASDPGCAFTKS--IGFELAVGDGVYWSGRWAMVVENGIVTYAAKET 181
Query: 187 AP-SKMKVSGGDVILGQI 203
            P + + VS  + +L  +
Sbjct: 182 NPGTDVTVSSVESVLAHL 199

>pdb|4DSS|A Chain A, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces Cerevisiae In Complex With Thioredoxin Trx2 Length = 176

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 72/138 (52%), Gaps = 6/138 (4%)
Query: 70  KDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKF-KAKGIDSVICVAVNDPYVMNGW 128
           K I + KKV+I G P A++   +  H+P Y N +D+  K K +D VI V V++P+    W
Sbjct: 41  KLISENKKVIITGAPAAFSPTSTVSHIPGYINYLDELVKEKEVDQVIVVTVDNPFANQAW 100
Query: 129 AEKLQAKDV--IEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEE 186
           A+ L  KD   I+F  D   +F KS  +G +L+       S RW+  VE+G +     E 
Sbjct: 101 AKSLGVKDTTHIKFASDPGCAFTKS--IGFELAVGDGVYWSGRWAMVVENGIVTYAAKET 158
Query: 187 AP-SKMKVSGGDVILGQI 203
            P + + VS  + +L  +
Sbjct: 159 NPGTDVTVSSVESVLAHL 176

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	203
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	1e-80
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	3e-68
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	3e-67
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	4e-66
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	6e-65
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	2e-64
2xhf_A	171	Peroxiredoxin 5; oxidoreductase, antioxidant enzym	2e-60
1xiy_A	182	Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin	8e-59
4dss_A	176	Peroxiredoxin type-2; electron transport, oxidored	8e-58
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	1e-57
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	1e-06
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	2e-06
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	4e-06
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	4e-06
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	5e-06
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	1e-05
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	1e-05
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	2e-05
2ywn_A	157	Peroxiredoxin-like protein; redox protein, structu	1e-04
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	2e-04

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum} Length = 171

 Score =  236 bits (605), Expect = 1e-80
 Identities = 134/171 (78%), Positives = 152/171 (88%)

Query: 33  ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCS 92
           A VA G+DI+SAA +VSLQKARTWDEGV S F+TTP+ DIFK KKVVIFGLPGAYTGVCS
Sbjct: 1   AKVATGTDILSAASNVSLQKARTWDEGVESKFSTTPVNDIFKDKKVVIFGLPGAYTGVCS 60

Query: 93  NQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSL 152
           ++HVP YK+NIDKFKAKG+DSVICVA+NDPY +N WAEK+QAKD IEFYGDFDGSFHKSL
Sbjct: 61  SKHVPPYKHNIDKFKAKGVDSVICVAINDPYTVNAWAEKIQAKDAIEFYGDFDGSFHKSL 120

Query: 153 DLGKDLSAALLGPRSERWSAYVEDGRIKALNVEEAPSKMKVSGGDVILGQI 203
           +L  DLSA LLG RSERWSAYV DG++KALNVEE+PS +KVSG + ILGQI
Sbjct: 121 ELTTDLSAGLLGIRSERWSAYVVDGKVKALNVEESPSDVKVSGAETILGQI 171

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti} Length = 184

 Score =  205 bits (524), Expect = 3e-68
 Identities = 67/193 (34%), Positives = 102/193 (52%), Gaps = 10/193 (5%)

Query: 11  SSPYAIRSVIDSLRIPTSSRAYASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIK 70
              +   S +D        ++  ++AVG  + +A          T+ E  +        +
Sbjct: 2   HHHHHHSSGVDLGTENLYFQSMMTIAVGDKLPNA----------TFKEKTADGPVEVTTE 51

Query: 71  DIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAE 130
            +FKGK+VV+F +PGA+T  CS  H+P Y  N D   A+G+D +  VAVND +VM  WA 
Sbjct: 52  LLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIAVVAVNDLHVMGAWAT 111

Query: 131 KLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEEAPSK 190
                  I F  D++ +F K++ +  DLSA  LG RS+R+S  VEDG +KALN+EE+P +
Sbjct: 112 HSGGMGKIHFLSDWNAAFTKAIGMEIDLSAGTLGIRSKRYSMLVEDGVVKALNIEESPGQ 171

Query: 191 MKVSGGDVILGQI 203
              SG   +L  +
Sbjct: 172 ATASGAAAMLELL 184

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina} Length = 167

 Score =  202 bits (517), Expect = 3e-67
 Identities = 51/135 (37%), Positives = 77/135 (57%)

Query: 69  IKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGW 128
           + ++F GKK V+F +PGA+T   S  H+P Y         KG+D + C+AVND +VM+ W
Sbjct: 25  MAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVNDSFVMDAW 84

Query: 129 AEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEEAP 188
            +   A D ++   D  G+F K++D+  DLSA L   RS+R+S  +EDG +  +NVE   
Sbjct: 85  GKAHGADDKVQMLADPGGAFTKAVDMELDLSAVLGNVRSKRYSLVIEDGVVTKVNVEPDG 144

Query: 189 SKMKVSGGDVILGQI 203
             +  S    IL Q+
Sbjct: 145 KGLTCSLAPNILSQL 159

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia} Length = 176

 Score =  200 bits (510), Expect = 4e-66
 Identities = 61/178 (34%), Positives = 90/178 (50%), Gaps = 6/178 (3%)

Query: 27  TSSRAYASVAVGSDIVSAAQDVSLQKARTWD-EGVSSNFATTPIKDIFKGKKVVIFGLPG 85
                +  + VG  +     D  L +      EG +       ++D   GK+VVIFGLPG
Sbjct: 2   AHHHHHHMIQVGDAL----PDAQLFEFIDDAREGCTLGPNACSVRDQVAGKRVVIFGLPG 57

Query: 86  AYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFD 145
           A+T  CS QHVP Y  + ++ +A GID + CV+VND +VM  W   L     +    D  
Sbjct: 58  AFTPTCSAQHVPGYVEHAEQLRAAGIDEIWCVSVNDAFVMGAWGRDLHTAGKVRMMADGS 117

Query: 146 GSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEEAPSKMKVSGGDVILGQI 203
            +F  +L L +DLSA  +G RS R++  ++ G +K L VE  P K +VS    +L  +
Sbjct: 118 AAFTHALGLTQDLSARGMGIRSLRYAMVIDGGVVKTLAVEA-PGKFEVSDAASVLATL 174

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A Length = 173

 Score =  197 bits (502), Expect = 6e-65
 Identities = 56/180 (31%), Positives = 86/180 (47%), Gaps = 14/180 (7%)

Query: 26  PTSSRAYASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPG 85
                  A + VG  I      V + +    ++          + ++FKGKK V+FG+PG
Sbjct: 6   HHHHHGSAPIKVGDAI----PAVEVFEGEPGNK--------VNLAELFKGKKGVLFGVPG 53

Query: 86  AYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFD 145
           A+T  CS  H+P +    +  KAKG+  V C++VND +V   W    +A+  +    D  
Sbjct: 54  AFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPT 113

Query: 146 GSFHKSLDLGKDLSAA--LLGPRSERWSAYVEDGRIKALNVEEAPSKMKVSGGDVILGQI 203
           G+F K  DL  D S        R +R+S  V+DG +KALNVE   + +  S    I+ Q+
Sbjct: 114 GAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL 173

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10 Length = 162

 Score =  195 bits (497), Expect = 2e-64
 Identities = 48/138 (34%), Positives = 79/138 (57%), Gaps = 1/138 (0%)

Query: 66  TTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVM 125
              +  +  GKKV++FG+PGA+T  CS +HVP +     + K+KG+  ++C++VNDP+VM
Sbjct: 26  EVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDPFVM 85

Query: 126 NGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVE 185
             WA+       ++F  D   ++  +L L  DL    LG RS R++  V+D ++KA N+E
Sbjct: 86  KAWAKSYPENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVDDLKVKAANIE 145

Query: 186 EAPSKMKVSGGDVILGQI 203
               +  VS  + IL  +
Sbjct: 146 G-GGEFTVSSAEDILKDL 162

>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana} Length = 171

 Score =  185 bits (472), Expect = 2e-60
 Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 13/168 (7%)

Query: 27  TSSRAYASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGA 86
                 + + VG  I     DV + +             + PI D+F+G+K ++F + GA
Sbjct: 6   HHHHHGSPIKVGDII----PDVLVYEDVPSK--------SFPIHDVFRGRKGILFSVVGA 53

Query: 87  YTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDG 146
           +    SN H+P Y +  DKFK +G  ++ C+AVNDP+VM  W + +  +  I    D  G
Sbjct: 54  FVP-GSNNHIPEYLSLYDKFKEEGYHTIACIAVNDPFVMAAWGKTVDPEHKIRMLADMHG 112

Query: 147 SFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEEAPSKMKVS 194
            F ++L    D S  L   RS R++  ++D +I++++ E   + +   
Sbjct: 113 EFTRALGTELDSSKMLGNNRSRRYAMLIDDNKIRSVSTEPDITGLACL 160

>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10 Length = 182

 Score =  181 bits (462), Expect = 8e-59
 Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 8/163 (4%)

Query: 48  VSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKF- 106
           V      +  +G  ++F +    ++F  KK+++  LPGA+T  CS + +P Y+   D F 
Sbjct: 16  VRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFI 75

Query: 107 KAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPR 166
           K    D + C+  ND YV+  W + +  K +  +  D + SF  S+++  D S   +G R
Sbjct: 76  KENNFDDIYCITNNDIYVLKSWFKSMDIKKIK-YISDGNSSFTDSMNMLVDKSNFFMGMR 134

Query: 167 SERWSAYVEDGRIKALNVEEAPSKM------KVSGGDVILGQI 203
             R+ A VE+  +  +  E+            +S  + +   +
Sbjct: 135 PWRFVAIVENNILVKMFQEKDKQHNIQTDPYDISTVNNVKEFL 177

>4dss_A Peroxiredoxin type-2; electron transport, oxidoreductase, peroxiredoxin, alkyl hydroperoxid reductase; 2.10A {Saccharomyces cerevisiae} PDB: 4dsq_A 4dsr_A Length = 176

 Score =  179 bits (455), Expect = 8e-58
 Identities = 45/138 (32%), Positives = 70/138 (50%), Gaps = 6/138 (4%)

Query: 70  KDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKF-KAKGIDSVICVAVNDPYVMNGW 128
           K I + KKV+I G P A++   +  H+P Y N +D+  K K +D VI V V++P+    W
Sbjct: 41  KLISENKKVIITGAPAAFSPTSTVSHIPGYINYLDELVKEKEVDQVIVVTVDNPFANQAW 100

Query: 129 AEKLQAKDV--IEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEE 186
           A+ L  KD   I+F  D   +F KS+    +L+       S RW+  VE+G +     E 
Sbjct: 101 AKSLGVKDTTHIKFASDPGCAFTKSIGF--ELAVGDGVYWSGRWAMVVENGIVTYAAKET 158

Query: 187 APSK-MKVSGGDVILGQI 203
            P   + VS  + +L  +
Sbjct: 159 NPGTDVTVSSVESVLAHL 176

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10 Length = 241

 Score =  180 bits (459), Expect = 1e-57
 Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 3/146 (2%)

Query: 60  VSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAV 119
               +      ++F  K V++F LPGA+T  CS+ H+P Y      FK  G+D ++ V+V
Sbjct: 18  QGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSV 77

Query: 120 NDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRI 179
           ND +VMN W E  +++++  F  D +G F + + +         G RS R+S  V++G +
Sbjct: 78  NDTFVMNAWKEDEKSENIS-FIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLVKNGVV 136

Query: 180 KALNVEEAPS--KMKVSGGDVILGQI 203
           + + +E        KVS  D +L  +
Sbjct: 137 EKMFIEPNEPGDPFKVSDADTMLKYL 162

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum} Length = 224

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 9/82 (10%), Positives = 22/82 (26%), Gaps = 2/82 (2%)

Query: 73  FKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKL 132
           F     +I  L        +   +   +          +  +I + V+ P  +     + 
Sbjct: 46  FSHTPKLIVTLLSVDEDEHAGL-LLLRETRRFLDSWPHLK-LIVITVDSPSSLARARHEH 103

Query: 133 QAKDVIEFYGDFDGSFHKSLDL 154
              ++          FHK   +
Sbjct: 104 GLPNIALLSTLRGRDFHKRYGV 125

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} Length = 166

 Score = 44.9 bits (107), Expect = 2e-06
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 11/85 (12%)

Query: 73  FKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKL 132
           + GKK +I  +P   TGVC  Q    + ++  K +      V+ ++ + P+    W    
Sbjct: 44  YAGKKKLISVVPSIDTGVCDQQ-TRKFNSDASKEEGI----VLTISADLPFAQKRWCASA 98

Query: 133 QAKDVIEFYGDFDGSFHKSLDLGKD 157
              +VI        S H+ L  G++
Sbjct: 99  GLDNVIT------LSDHRDLSFGEN 117

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus} Length = 171

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 19/111 (17%), Positives = 43/111 (38%), Gaps = 12/111 (10%)

Query: 73  FKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKL 132
            K    VI  +P   T VC  +    +   +     +G+D V  V+++ P+    + E  
Sbjct: 45  AKDVVQVIITVPSLDTPVCETE-TKKFNEIMAGM--EGVD-VTVVSMDLPFAQKRFCESF 100

Query: 133 QAKDVIEFYGDFDGSFHKSLD-LGKDLSAALLGPRSERWSAYV--EDGRIK 180
             ++V     DF     +    L  + +   +  R    + ++  ++G++ 
Sbjct: 101 NIQNVT-VASDFRYRDMEKYGVLIGEGALKGILAR----AVFIIDKEGKVA 146

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10 Length = 163

 Score = 44.1 bits (105), Expect = 4e-06
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 73  FKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKL 132
           F GKK V+  +P   TG+CS Q    +   +          V+ V+++ P+    W    
Sbjct: 40  FDGKKKVLSVVPSIDTGICSTQ-TRRFNEELAGLDN---TVVLTVSMDLPFAQKRWCGAE 95

Query: 133 QAKDVIEFYGDF-DGSFHKSLDL 154
              +      D+ D SF +   L
Sbjct: 96  GLDNA-IMLSDYFDHSFGRDYAL 117

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A Length = 175

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 6/78 (7%)

Query: 73  FKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKL 132
           F+GK V++   P   T VC+   V ++        A     V+CV+ + P+    +    
Sbjct: 42  FRGKSVLLNIFPSVDTPVCATS-VRTFDERAAASGAT----VLCVSKDLPFAQKRFCGAE 96

Query: 133 QAKDVIEFYGDFDGSFHK 150
             ++V+     F  SF +
Sbjct: 97  GTENVM-PASAFRDSFGE 113

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A Length = 200

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 10/85 (11%)

Query: 73  FKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKL 132
           F GK+ V+   P   TGVC+   V  +     + +      V+C++ + P+  + +    
Sbjct: 76  FAGKRKVLNIFPSIDTGVCAAS-VRKFNQLAGELENT---VVLCISSDLPFAQSRFCGAE 131

Query: 133 QAKDVIEFYGDFDGSFHKSLDLGKD 157
              +VI        S  +  D  + 
Sbjct: 132 GLSNVIT------LSTLRGADFKQA 150

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10 Length = 165

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 11/111 (9%)

Query: 73  FKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKL 132
           F  K+ V+   P   TGVC+   V  +     K        V+C++ + P+    +    
Sbjct: 41  FASKRKVLNIFPSIDTGVCATS-VRKFNQQAAKLSNT---IVLCISADLPFAQARFCGAE 96

Query: 133 QAKDVIEFYGDF-DGSFHKSLDLGKDLSAALLGPRSERWSAYV--EDGRIK 180
             ++  +    F + + H    LG D+    L   + R +  V  E   + 
Sbjct: 97  GIENA-KTVSTFRNHALHS--QLGVDIQTGPLAGLTSR-AVIVLDEQNNVL 143

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A Length = 160

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 13/60 (21%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 73  FKGKK-VVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEK 131
           ++G K V++   P A+TG+C  + +   ++++ +F+       + ++V  P     WA +
Sbjct: 33  YRGAKNVLLVFFPLAFTGICQGE-LDQLRDHLPEFENDDSA-ALAISVGPPPTHKIWATQ 90

>2ywn_A Peroxiredoxin-like protein; redox protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Sulfolobus tokodaii} PDB: 3hjp_A Length = 157

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 11/79 (13%)

Query: 73  FKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKL 132
            KGK VV+   P A+T VC+ +   ++++++ KF       V+ ++V+ P+    + E  
Sbjct: 28  LKGKVVVLAFYPAAFTQVCTKEMC-TFRDSMAKFNQVNAV-VLGISVDPPFSNKAFKEHN 85

Query: 133 Q---------AKDVIEFYG 142
           +          ++V++ Y 
Sbjct: 86  KLNFTILSDYNREVVKKYN 104

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A Length = 167

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 18/85 (21%)

Query: 73  FKGKKVVIFGLPGAYTGVCS------NQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMN 126
            KGK  +I  +P   TGVC       N+      +           +V  ++ + P+   
Sbjct: 42  MKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKLGD----------VNVYTISADLPFAQA 91

Query: 127 GWAEKLQAKDVIEFYGDF-DGSFHK 150
            W        V     D  D SF +
Sbjct: 92  RWCGANGIDKVE-TLSDHRDMSFGE 115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	203
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	100.0
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	100.0
2xhf_A	171	Peroxiredoxin 5; oxidoreductase, antioxidant enzym	100.0
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	100.0
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	100.0
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	100.0
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	100.0
1xiy_A	182	Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin	100.0
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	100.0
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	100.0
3tue_A	219	Tryparedoxin peroxidase; thioredoxin fold, peroxir	100.0
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	100.0
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	99.98
4h86_A	199	Peroxiredoxin type-2; oxidoreductase; 2.00A {Sacch	99.97
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	99.97
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	99.97
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	99.97
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	99.96
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	99.96
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	99.96
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	99.96
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	99.96
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	99.96
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	99.96
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	99.96
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	99.96
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	99.96
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	99.96
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	99.96
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	99.96
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	99.96
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	99.96
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	99.95
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	99.95
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	99.95
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	99.95
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	99.95
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	99.95
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	99.95
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	99.95
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	99.95
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	99.94
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	99.94
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	99.94
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	99.94
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	99.94
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	99.93
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	99.93
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	99.93
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.93
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.92
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.92
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	99.92
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.92
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	99.92
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	99.92
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.92
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	99.92
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.92
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	99.91
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.91
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	99.91
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.91
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	99.91
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.91
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	99.91
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.91
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	99.9
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	99.9
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	99.9
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	99.9
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.9
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.9
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.9
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	99.9
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	99.9
3me7_A	170	Putative uncharacterized protein; electron transfe	99.89
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.89
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	99.89
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.89
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	99.89
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	99.82
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	99.89
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.89
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	99.89
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	99.89
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	99.89
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.89
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	99.89
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	99.88
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	99.88
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.88
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	99.88
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.88
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	99.88
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.88
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.88
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.86
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	99.85
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	99.84
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.83
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	99.72
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	99.82
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	99.82
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	99.81
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	99.78
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.32
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.28
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.27
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.2
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.19
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.12
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.12
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.07
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.0
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.0
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.0
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	98.99
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	98.97
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	98.97
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	98.96
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	98.93
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	98.93
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	98.92
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	98.92
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	98.92
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	98.91
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	98.91
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	98.91
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	98.91
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	98.91
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.91
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	98.9
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	98.9
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	98.89
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	98.89
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	98.89
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	98.89
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	98.88
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	98.88
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	98.88
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	98.87
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	98.86
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	98.86
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	98.86
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	98.86
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	98.85
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	98.85
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	98.84
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	98.84
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	98.84
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	98.84
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	98.83
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	98.83
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	98.83
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	98.83
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	98.82
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	98.82
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	98.82
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	98.81
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	98.79
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	98.79
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	98.79
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	98.27
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	98.78
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	98.78
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	98.78
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	98.76
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	98.76
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	98.76
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	98.76
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	98.75
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	98.74
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	98.71
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	98.7
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	98.7
1mek_A	120	Protein disulfide isomerase; electron transport, r	98.69
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	98.68
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	98.68
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	98.67
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	98.11
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	98.66
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	98.63
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	98.61
2qsi_A	137	Putative hydrogenase expression/formation protein;	98.59
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	98.59
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	98.56
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	98.55
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	98.51
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	98.5
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	98.49
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	98.48
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	98.47
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	98.44
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	98.44
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	98.41
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	98.4
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	98.39
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	98.36
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	98.36
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	98.35
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	98.3
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	98.3
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	98.28
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	98.23
3ira_A	173	Conserved protein; methanosarcina mazei,structural	98.23
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	98.23
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	98.21
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	98.19
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	98.16
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	98.15
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	98.06
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	98.02
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	98.02
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	97.97
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	97.79
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	97.75
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	97.7
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	97.68
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	97.67
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	97.51
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	97.45
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	97.43
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	97.38
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	97.33
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	97.19
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	97.19
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	97.15
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	96.99
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	96.95
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	96.9
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	96.9
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	96.87
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	96.83
1z6m_A	175	Conserved hypothetical protein; structural genomic	96.82
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	96.64
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	96.62
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	96.6
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	96.49
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	96.48
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	96.33
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	96.09
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	96.07
1ttz_A	87	Conserved hypothetical protein; structural genomic	95.67
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	95.48
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	95.22
1kte_A	105	Thioltransferase; redox-active center, electron tr	95.14
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	95.01
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	94.91
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	94.91
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	94.67
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	94.63
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	94.58
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	94.46
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	94.45
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	94.43
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	94.25
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	93.69
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	93.67
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	93.39
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	93.33
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	93.09
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	92.46
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	92.15
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	92.04
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	91.26
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	90.96
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	90.96
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	90.04
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	89.95
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	89.59
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	89.54
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	89.41
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	86.29
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	83.78
3l78_A	120	Regulatory protein SPX; transcription, transcripti	83.1
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	82.36
1z3e_A	132	Regulatory protein SPX; bacterial transcription re	81.06

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=100.00  E-value=1.1e-38  Score=257.40  Aligned_cols=162  Identities=38%  Similarity=0.651  Sum_probs=143.7

Q ss_pred             ccccccccCCCccccCCCceEEecc--ccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCc-cchhhHHHhHHH
Q 028808           29 SRAYASVAVGSDIVSAAQDVSLQKA--RTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSN-QHVPSYKNNIDK  105 (203)
Q Consensus        29 ~~~~~~~~~G~~~~~~APdf~l~~~--~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~-ehl~~l~~~~~~  105 (203)
                      ...++++++|++    ||+|++++.  +|        .++++|+++++||++||+|||++|||+|+. | +|.|++++++
T Consensus        20 ~~~~~~l~vG~~----aPdf~l~~~~~~G--------~~~v~L~d~~~Gk~vvL~f~~a~wcp~C~~~e-~p~l~~~~~~   86 (184)
T 3uma_A           20 FQSMMTIAVGDK----LPNATFKEKTADG--------PVEVTTELLFKGKRVVLFAVPGAFTPTCSLNH-LPGYLENRDA   86 (184)
T ss_dssp             CCCSSCCCTTCB----CCCCEEEEEETTE--------EEEEEHHHHHTTSEEEEEEESCTTCHHHHHTH-HHHHHHTHHH
T ss_pred             ccccCcCCCCCC----CCCcEeecccCCC--------ceEEeHHHHhCCCCEEEEEEcCCCCCCcCHHH-HHHHHHHHHH
Confidence            334567999999    699999987  42        178999995599999999999999999999 8 9999999999


Q ss_pred             HHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEeCCEEEEEEee
Q 028808          106 FKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVE  185 (203)
Q Consensus       106 f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~  185 (203)
                      |+++|++.|++||.|+++.+++|+++++++.+||+++|++++++++||+..+....|++.++.|++||||||+|++++++
T Consensus        87 ~~~~gv~~vv~Is~d~~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~~~~~~~g~g~~~~r~tfiIddG~I~~~~~~  166 (184)
T 3uma_A           87 ILARGVDDIAVVAVNDLHVMGAWATHSGGMGKIHFLSDWNAAFTKAIGMEIDLSAGTLGIRSKRYSMLVEDGVVKALNIE  166 (184)
T ss_dssp             HHTTTCCEEEEEESSCHHHHHHHHHHHTCTTTSEEEECTTCHHHHHTTCEEEEGGGTCEEEECCEEEEEETTEEEEEEEC
T ss_pred             HHHcCCCEEEEEECCCHHHHHHHHHHhCCCCceEEEEcCchHHHHHcCCceeccccCCcccceeEEEEECCCEEEEEEEe
Confidence            99999965999999999999999999999434999999999999999998765444555567899999999999999999


Q ss_pred             cCCCCcccCCHHHHHhcC
Q 028808          186 EAPSKMKVSGGDVILGQI  203 (203)
Q Consensus       186 ~~~~~~~~~~a~~vL~~l  203 (203)
                      +++++++.++++++|++|
T Consensus       167 ~~~g~~~~~~~~~vL~~L  184 (184)
T 3uma_A          167 ESPGQATASGAAAMLELL  184 (184)
T ss_dssp             SSTTCCSTTSHHHHHHHC
T ss_pred             CCCCCCcCCCHHHHHhhC
Confidence            999989999999999987

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=100.00  E-value=2.2e-38  Score=253.29  Aligned_cols=158  Identities=34%  Similarity=0.546  Sum_probs=138.9

Q ss_pred             cccccccCCCccccCCCceEEe-ccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCC-ccchhhHHHhHHHHH
Q 028808           30 RAYASVAVGSDIVSAAQDVSLQ-KARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCS-NQHVPSYKNNIDKFK  107 (203)
Q Consensus        30 ~~~~~~~~G~~~~~~APdf~l~-~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~-~ehl~~l~~~~~~f~  107 (203)
                      ....++++|++    ||+|+|+ +.+|         ++++|+++++||++||+|||++|||+|+ +| +|.|++++++|+
T Consensus        10 ~~~~~~~vG~~----aPdf~l~~~~~g---------~~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e-~p~l~~~~~~~~   75 (173)
T 3mng_A           10 HGSAPIKVGDA----IPAVEVFEGEPG---------NKVNLAELFKGKKGVLFGVPGAFTPGCSKTH-LPGFVEQAEALK   75 (173)
T ss_dssp             ---CCCCTTCB----CCCCEEECSSTT---------CEEEHHHHTTTSEEEEEECSCTTCHHHHHTH-HHHHHHTHHHHH
T ss_pred             CCCCCCCCCCC----CCCeEeeeCCCC---------CEEEhHHHhCCCcEEEEEEeCCCCCCCCHHH-HHHHHHHHHHHH
Confidence            44578999999    6999999 7765         8999999669999999999999999999 58 999999999999


Q ss_pred             HcCCcEEEE-EecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccc---cccCCCCcceEEEEEeCCEEEEEE
Q 028808          108 AKGIDSVIC-VAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLS---AALLGPRSERWSAYVEDGRIKALN  183 (203)
Q Consensus       108 ~~gv~~vi~-IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~---~~g~~~~~~r~tfIIddG~I~~~~  183 (203)
                      ++|++ ||+ ||.|+++.+++|+++++++.+||+++|++++++++||+..+..   ..| +.++.|++||||||+|++++
T Consensus        76 ~~gv~-vv~~iS~D~~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~~~~~~~~~~g-~~~~~r~tfvIDdG~I~~~~  153 (173)
T 3mng_A           76 AKGVQ-VVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFG-NRRLKRFSMVVQDGIVKALN  153 (173)
T ss_dssp             TTTCC-EEEEEESSCHHHHHHHHHHTTCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHS-SCCBCCEEEEEETTEEEEEE
T ss_pred             hCCCE-EEEEEcCCCHHHHHHHHHHhCCCCceEEEECCChHHHHHhCCCcccccccccC-CcceEEEEEEEECCEEEEEE
Confidence            99999 997 9999999999999999984349999999999999999986421   112 23578999999999999999


Q ss_pred             eecCCCCcccCCHHHHHhcC
Q 028808          184 VEEAPSKMKVSGGDVILGQI  203 (203)
Q Consensus       184 ~~~~~~~~~~~~a~~vL~~l  203 (203)
                      +++++.+.+++++++||++|
T Consensus       154 v~~~~~g~~~~~~~~vl~~l  173 (173)
T 3mng_A          154 VEPDGTGLTCSLAPNIISQL  173 (173)
T ss_dssp             ECTTSSCSSTTSHHHHHHHC
T ss_pred             EeCCCCCcchHHHHHHHHhC
Confidence            99998888999999999987

>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}

Probab=100.00  E-value=5.7e-38  Score=251.02  Aligned_cols=158  Identities=28%  Similarity=0.529  Sum_probs=136.6

Q ss_pred             ccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCc
Q 028808           33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID  112 (203)
Q Consensus        33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~  112 (203)
                      .++++|++    ||+|+|++. |       .+++++|+++++||++||+|||++|||+|+.| ++.|++.+++|+++|++
T Consensus        12 ~~~~vGd~----aPdf~l~~~-g-------~~~~v~L~d~~~gk~vVL~fyP~~fTp~Ct~e-~~~f~~~~~ef~~~gv~   78 (171)
T 2xhf_A           12 SPIKVGDI----IPDVLVYED-V-------PSKSFPIHDVFRGRKGILFSVVGAFVPGSNNH-IPEYLSLYDKFKEEGYH   78 (171)
T ss_dssp             CCCCTTCB----CCCCEEECS-S-------TTCEEETHHHHTTSEEEEEECSCTTCTTTTSS-HHHHHHTHHHHHHTTCC
T ss_pred             CcccCcCC----CCCeEEecC-C-------CCcEEEhHHHhCCCeEEEEEECCCCCCcCHHH-HHHHHHHHHHHHHCCCC
Confidence            57999999    699999842 2       12689999966999999999999999999999 99999999999999994


Q ss_pred             EEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEeCCEEEEEEeecCCCCcc
Q 028808          113 SVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEEAPSKMK  192 (203)
Q Consensus       113 ~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~~~~~~~  192 (203)
                      .|+|||+|+++++++|++++++..+||+|||++++++++||+..+....|++.++.|++||||||+|+++++++++++++
T Consensus        79 ~VigIS~D~~~~~~~w~~~~~~~~~f~lLSD~~~~~a~ayGv~~~~~~~g~g~~~~R~tfvIddG~V~~~~v~~~~~~~~  158 (171)
T 2xhf_A           79 TIACIAVNDPFVMAAWGKTVDPEHKIRMLADMHGEFTRALGTELDSSKMLGNNRSRRYAMLIDDNKIRSVSTEPDITGLA  158 (171)
T ss_dssp             EEEEEESSCHHHHHHHHHHHCTTCCSEEEECTTSHHHHHHTCBCCCHHHHSSCCBCCEEEEEETTEEEEEEETTSCSHHH
T ss_pred             EEEEEeCCCHHHHHHHHHhcCCCCCeEEEEeCCchHHHHhCCceeccccCCCcceEEEEEEEeCCEEEEEEEeCCCCccc
Confidence            49999999999999999999982239999999999999999987543334455689999999999999999999887778


Q ss_pred             cCCHHHHHhcC
Q 028808          193 VSGGDVILGQI  203 (203)
Q Consensus       193 ~~~a~~vL~~l  203 (203)
                      +++|++||++|
T Consensus       159 ~s~a~~vL~~~  169 (171)
T 2xhf_A          159 CLLSIQRQKEN  169 (171)
T ss_dssp             HHHHHHHC---
T ss_pred             CCCHHHHHHHh
Confidence            99999999875

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=100.00  E-value=1.2e-37  Score=250.15  Aligned_cols=164  Identities=34%  Similarity=0.616  Sum_probs=141.7

Q ss_pred             ccccCCCccccCCCceEEeccccccCCCC-CCceeeecccccCCCeEEEEEeeCCCCCCCCc-cchhhHHHhHHHHHHcC
Q 028808           33 ASVAVGSDIVSAAQDVSLQKARTWDEGVS-SNFATTPIKDIFKGKKVVIFGLPGAYTGVCSN-QHVPSYKNNIDKFKAKG  110 (203)
Q Consensus        33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~-~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~-ehl~~l~~~~~~f~~~g  110 (203)
                      .++++||++    |++++....+++.+.. +..++++|+++++||++||+|||++|||+|+. | +|.|++.+++|+++|
T Consensus         8 ~~~~~~~~~----p~~~~~~~~~~~~~~~~~~~~~vsLsd~~~Gk~vVL~fyP~~~tp~Ct~~E-l~~f~~~~~ef~~~g   82 (176)
T 4f82_A            8 HMIQVGDAL----PDAQLFEFIDDAREGCTLGPNACSVRDQVAGKRVVIFGLPGAFTPTCSAQH-VPGYVEHAEQLRAAG   82 (176)
T ss_dssp             CCCCTTCBC----CCCEEEEEECSCCTTCCSEEEEEEHHHHHTTCEEEEEEESCTTCHHHHHTH-HHHHHHHHHHHHHTT
T ss_pred             hhhhcCCcC----CceEEEEecccccccccCCceEEeHHHHhCCCeEEEEEEcCCCCCCCCHHH-HHHHHHHHHHHHhCC
Confidence            368999995    9999987643110001 24589999996699999999999999999999 8 999999999999999


Q ss_pred             C-cEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEeCCEEEEEEeecCCC
Q 028808          111 I-DSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEEAPS  189 (203)
Q Consensus       111 v-~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~~~~  189 (203)
                      + + |++||+|+++.+++|+++++++.+||+++|++++++++||+..+....|++.++.|++|||+||+|+++++++ ++
T Consensus        83 ~d~-VigIS~D~~~~~~~f~~~~~l~~~f~lLsD~~~~va~ayGv~~~~~~~G~g~~s~R~tfII~dG~I~~~~~~~-~~  160 (176)
T 4f82_A           83 IDE-IWCVSVNDAFVMGAWGRDLHTAGKVRMMADGSAAFTHALGLTQDLSARGMGIRSLRYAMVIDGGVVKTLAVEA-PG  160 (176)
T ss_dssp             CCE-EEEEESSCHHHHHHHHHHTTCTTTSEEEECTTCHHHHHHTCEEECGGGTCCEEECCEEEEEETTEEEEEEECC-TT
T ss_pred             CCE-EEEEeCCCHHHHHHHHHHhCCCCCceEEEcCchHHHHHhCCCccccccCCCcccccEEEEEcCCEEEEEEEcC-CC
Confidence            9 7 9999999999999999999984359999999999999999987654456666678999999999999999987 56


Q ss_pred             CcccCCHHHHHhcC
Q 028808          190 KMKVSGGDVILGQI  203 (203)
Q Consensus       190 ~~~~~~a~~vL~~l  203 (203)
                      +++.++|+++|++|
T Consensus       161 ~~~~~~a~~vL~~L  174 (176)
T 4f82_A          161 KFEVSDAASVLATL  174 (176)
T ss_dssp             CCSSSSHHHHHHTC
T ss_pred             CcchhhHHHHHHHh
Confidence            78899999999986

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=100.00  E-value=4.3e-37  Score=244.31  Aligned_cols=159  Identities=79%  Similarity=1.292  Sum_probs=133.0

Q ss_pred             CCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHH
Q 028808           45 AQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYV  124 (203)
Q Consensus        45 APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~  124 (203)
                      ||+|++++.+.+.+|.++++++++|+++++||++||+|||++|||+|+.||+|.|++++++|+++|++.|++||.|+++.
T Consensus        13 aP~f~l~~~~~~~~G~~~~~~~v~l~~~~~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~Is~d~~~~   92 (171)
T 2pwj_A           13 ASNVSLQKARTWDEGVESKFSTTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICVAINDPYT   92 (171)
T ss_dssp             SSSBCCCSCEECCCSSCTTCCCEEHHHHHTTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEEESSCHHH
T ss_pred             CCCeEEecccccccCCccCcceEEHHHHhCCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHH
Confidence            79999998730001211233789999955998899999999999999998899999999999999996599999999999


Q ss_pred             HHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEeCCEEEEEEeecCCCCcccCCHHHHHhcC
Q 028808          125 MNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEEAPSKMKVSGGDVILGQI  203 (203)
Q Consensus       125 ~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~~~~~~~~~~a~~vL~~l  203 (203)
                      +++|+++++++.+||+++|++++++++||+.......|+|.++.|++||||||+|++++++.++++.+++++++||++|
T Consensus        93 ~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv~~~~~~~~~g~~~~~~t~~I~~G~I~~~~~~~~~~~~~~~~~~~il~~l  171 (171)
T 2pwj_A           93 VNAWAEKIQAKDAIEFYGDFDGSFHKSLELTTDLSAGLLGIRSERWSAYVVDGKVKALNVEESPSDVKVSGAETILGQI  171 (171)
T ss_dssp             HHHHHHHTTCTTTSEEEECTTCHHHHHHTCEEECTTTTCCEEECCEEEEEETTEEEEEEECSSTTCCSSSSHHHHHHHC
T ss_pred             HHHHHHHhCCCCceEEEECCccHHHHHhCCccccccccCCcccceeEEEEECCEEEEEEeecCCCCCcccCHHHHHhcC
Confidence            9999999996214999999999999999998643323344445788899999999999999999888899999999986

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=100.00  E-value=1.4e-36  Score=237.62  Aligned_cols=148  Identities=21%  Similarity=0.355  Sum_probs=120.4

Q ss_pred             cccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcE
Q 028808           34 SVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDS  113 (203)
Q Consensus        34 ~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~  113 (203)
                      ++++|++    ||+|+|++.+|         ++++|++ ++||++||+|||++|||+|+.| +|.|++++++|+++|+. 
T Consensus         3 ~l~vG~~----aPdF~l~~~~G---------~~~~l~d-~~Gk~vvl~f~~~~~c~~C~~e-~~~l~~~~~~~~~~~~~-   66 (157)
T 4g2e_A            3 MVEIGEL----APDFELPDTEL---------KKVKLSA-LKGKVVVLAFYPAAFTQVCTKE-MCTFRDSMAKFNQVNAV-   66 (157)
T ss_dssp             CCCTTSB----CCCCEEEBTTS---------CEEEGGG-GTTSCEEEEECSCTTCCC-------CCSCGGGGGGGCSSE-
T ss_pred             cCCCCCC----CcCeEeECCCC---------CEEeHHH-HCCCeEEEEecCCCCCCccccc-hhhcccccccccccCce-
Confidence            5899999    79999999886         8999999 5999888887789999999999 99999999999999998 


Q ss_pred             EEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCCcc
Q 028808          114 VICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSKMK  192 (203)
Q Consensus       114 vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~~~  192 (203)
                      +++||.|+++.+++|+++++++  ||+++|++++++++||+............+.|++|||| +|+|+++++++++.+  
T Consensus        67 ~v~vs~d~~~~~~~~~~~~~~~--~p~l~D~~~~v~~~ygv~~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~--  142 (157)
T 4g2e_A           67 VLGISVDPPFSNKAFKEHNKLN--FTILSDYNREVVKKYNVAWEFPALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTK--  142 (157)
T ss_dssp             EEEEESSCHHHHHHHHHHTTCC--SEEEECTTSHHHHHTTCEEECTTSTTCEEECEEEEEECTTSBEEEEEEESSTTC--
T ss_pred             EeeecccchhHHHHHHHHcCCc--EEEEEcCCcHHHHHcCCccccccCCCcceeeeeEEEECCCCEEEEEEECCCCCC--
Confidence            9999999999999999999996  99999999999999999764321111123579999999 999999999987542  


Q ss_pred             cCCHHHHHh
Q 028808          193 VSGGDVILG  201 (203)
Q Consensus       193 ~~~a~~vL~  201 (203)
                      ..+.+++++
T Consensus       143 ~~~~~eil~  151 (157)
T 4g2e_A          143 EPPYDEIEK  151 (157)
T ss_dssp             CCCHHHHHH
T ss_pred             CCCHHHHHH
Confidence            344555544

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=100.00  E-value=4.1e-37  Score=242.91  Aligned_cols=149  Identities=16%  Similarity=0.367  Sum_probs=130.5

Q ss_pred             cccCCCccccCCCceEEeccccccCCCCCCceeeeccccc-CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCc
Q 028808           34 SVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIF-KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID  112 (203)
Q Consensus        34 ~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~-~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~  112 (203)
                      ++++|++    ||+|+|++.+|         ++++|+++. +||++||+|||++|||+|+.| +|.|++++++|+++|+.
T Consensus         4 ml~vG~~----aPdF~l~~~~G---------~~v~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e-~~~l~~~~~~~~~~~v~   69 (164)
T 4gqc_A            4 LVELGEK----APDFTLPNQDF---------EPVNLYEVLKRGRPAVLIFFPAAFSPVCTKE-LCTFRDKMAQLEKANAE   69 (164)
T ss_dssp             CCCTTSB----CCCCEEEBTTS---------CEEEHHHHHHTSSCEEEEECSCTTCCEECSS-CEESCCCGGGGGGSSSE
T ss_pred             cccCCCC----CcCcEeECCCC---------CEEEHHHHhcCCCEEEEEEeCCCCCCCcccc-hhhhhhhHHHhhccCce
Confidence            5899999    79999999886         899999953 799999999999999999999 99999999999999998


Q ss_pred             EEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCCc
Q 028808          113 SVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSKM  191 (203)
Q Consensus       113 ~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~~  191 (203)
                       +++||.|+++.+++|+++++++  ||+++|++++++++||+..... .+....+.|++|||| +|+|+|+++++++.  
T Consensus        70 -vv~is~d~~~~~~~~~~~~~~~--fp~l~D~~~~v~~~ygv~~~~~-~~~~~~~~p~tflID~~G~I~~~~~~~~~~--  143 (164)
T 4gqc_A           70 -VLAISVDSPWCLKKFKDENRLA--FNLLSDYNREVIKLYNVYHEDL-KGLKMVAKRAVFIVKPDGTVAYKWVTDNPL--  143 (164)
T ss_dssp             -EEEEESSCHHHHHHHHHHTTCC--SEEEECTTSHHHHHTTCEEEEE-TTEEEEECCEEEEECTTSBEEEEEECSCTT--
T ss_pred             -EEEecCCCHHHHHHHHHhcCcc--cceeecCchHHHHHcCCccccc-ccCcCCeeeEEEEECCCCEEEEEEEeCCCC--
Confidence             9999999999999999999997  9999999999999999976422 122223579999999 99999999988763  


Q ss_pred             ccCCHHHHHhc
Q 028808          192 KVSGGDVILGQ  202 (203)
Q Consensus       192 ~~~~a~~vL~~  202 (203)
                      +..+.+++|+.
T Consensus       144 ~~~~~~eil~~  154 (164)
T 4gqc_A          144 NEPDYDEVVRE  154 (164)
T ss_dssp             CCCCHHHHHHH
T ss_pred             CCCCHHHHHHH
Confidence            46678888765

>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10

Probab=100.00  E-value=5.7e-36  Score=241.53  Aligned_cols=162  Identities=25%  Similarity=0.484  Sum_probs=135.7

Q ss_pred             ccCCCccccCCCceEEec--cc-----cccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCC-ccchhhHHHhHHHH
Q 028808           35 VAVGSDIVSAAQDVSLQK--AR-----TWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCS-NQHVPSYKNNIDKF  106 (203)
Q Consensus        35 ~~~G~~~~~~APdf~l~~--~~-----g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~-~ehl~~l~~~~~~f  106 (203)
                      +++|++    ||+|+|++  .+     +..+| ...++.++|+++++||++||+|||++|||+|+ .| ++.|++.+++|
T Consensus         1 l~vGd~----aPdf~l~~~~~~~~~~~~~~~G-~~~~~~v~l~d~~~gk~vVL~fyP~~fTp~Ct~~e-~~~f~~~~~~f   74 (182)
T 1xiy_A            1 MKENDL----IPNVKVMIDVRNMNNISDTDGS-PNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKM-IPGYEEEYDYF   74 (182)
T ss_dssp             CCTTCB----CCCCEEEEEHHHHTC---------CCEEEEEHHHHSTTCEEEEEECSCTTCHHHHHTH-HHHHHHTHHHH
T ss_pred             CCCCCC----CCCeEEEcccccccccccccCC-CccceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHH-HHHHHHHHHHH
Confidence            468999    69999998  30     00001 01236899999779999999999999999999 88 99999999999


Q ss_pred             -HHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEeCCEEEEEEee
Q 028808          107 -KAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVE  185 (203)
Q Consensus       107 -~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~  185 (203)
                       +++|++.|++||+|++++|++|++++++. +||+|||++++++++||+..+....|++.++.|++||||||+|+++++.
T Consensus        75 ~~~~g~~~V~gvS~D~~~~~~~~~~~~~~~-~f~lLsD~~~~~a~~yGv~~~~~~~G~g~~~~R~tfvIddG~V~~~~v~  153 (182)
T 1xiy_A           75 IKENNFDDIYCITNNDIYVLKSWFKSMDIK-KIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVENNILVKMFQE  153 (182)
T ss_dssp             HTTSCCSEEEEEESSCHHHHHHHHHHTTCC-SSEEEECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEETTEEEEEEEC
T ss_pred             HHhCCCcEEEEEeCCCHHHHHHHHHHcCCC-CceEEEeCchHHHHHhCCceeccccCCCCceEEEEEEEcCCEEEEEEEe
Confidence             99999449999999999999999999994 4999999999999999998765445666668999999999999999998


Q ss_pred             cCCCC------cccCCHHHHHhcC
Q 028808          186 EAPSK------MKVSGGDVILGQI  203 (203)
Q Consensus       186 ~~~~~------~~~~~a~~vL~~l  203 (203)
                      +++++      ++.+++++||++|
T Consensus       154 ~~~~~~~~~~~~~~~~~~~vL~~L  177 (182)
T 1xiy_A          154 KDKQHNIQTDPYDISTVNNVKEFL  177 (182)
T ss_dssp             SSCCTTCSSCCCSTTSHHHHHHHH
T ss_pred             CCcccccccCcccCCCHHHHHHHH
Confidence            76542      5679999999875

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=100.00  E-value=1.5e-35  Score=234.88  Aligned_cols=155  Identities=32%  Similarity=0.559  Sum_probs=135.2

Q ss_pred             ccccCCCccccCCCceEEe-ccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCc-cchhhHHHhHHHHHHcC
Q 028808           33 ASVAVGSDIVSAAQDVSLQ-KARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSN-QHVPSYKNNIDKFKAKG  110 (203)
Q Consensus        33 ~~~~~G~~~~~~APdf~l~-~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~-ehl~~l~~~~~~f~~~g  110 (203)
                      |++++|++    ||+|+++ +.+|         ++++|+++++||++||+|||++|||+|+. | +|.|++++++|+++|
T Consensus         1 m~l~~G~~----aP~f~l~~~~~G---------~~v~L~d~~~Gk~vvl~f~~a~wcp~C~~~e-~p~l~~~~~~~~~~g   66 (167)
T 2wfc_A            1 MPIKEGDK----LPAVTVFGATPN---------DKVNMAELFAGKKGVLFAVPGAFTPGSSKTH-LPGYVEQAAAIHGKG   66 (167)
T ss_dssp             -CCCTTCB----CCCCEEESSSTT---------CEEEHHHHTTTSEEEEEEESCTTCHHHHHTH-HHHHHHTHHHHHHTT
T ss_pred             CCCCCCCc----CCCcEeecCCCC---------cEEeHHHHhCCCcEEEEEeCCCCCCCCCHHH-HHHHHHHHHHHHHCC
Confidence            45889999    6999999 8775         89999995599999999999999999999 9 999999999999999


Q ss_pred             C-cEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcccccc-ccCCCCcceEEEEEeCCEEEEEEeecCC
Q 028808          111 I-DSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSA-ALLGPRSERWSAYVEDGRIKALNVEEAP  188 (203)
Q Consensus       111 v-~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~-~g~~~~~~r~tfIIddG~I~~~~~~~~~  188 (203)
                      + + ||+||.|+++.+++|+++++++.+||+++|++++++++||+...... .| ..++.|++|||++|+|+++++++++
T Consensus        67 v~~-vv~Is~d~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~gv~~~~~~~~g-~~~~~p~t~lI~~G~I~~~~~~~~~  144 (167)
T 2wfc_A           67 VDI-IACMAVNDSFVMDAWGKAHGADDKVQMLADPGGAFTKAVDMELDLSAVLG-NVRSKRYSLVIEDGVVTKVNVEPDG  144 (167)
T ss_dssp             CCE-EEEEESSCHHHHHHHHHHTTCTTTSEEEECTTSHHHHHTTCEECCHHHHS-SCEECCEEEEEETTEEEEEEECTTS
T ss_pred             CCE-EEEEeCCCHHHHHHHHHhcCCCcceEEEECCCCcHHHHcCCccccccccC-cccceEEEEEEeCCEEEEEEecCCC
Confidence            9 8 99999999999999999999842499999999999999999754211 12 1235699999999999999999988


Q ss_pred             CCcccCCHHHHHhcC
Q 028808          189 SKMKVSGGDVILGQI  203 (203)
Q Consensus       189 ~~~~~~~a~~vL~~l  203 (203)
                      ...+.+.|+.+|++|
T Consensus       145 ~~~~~~~~~~~~~~~  159 (167)
T 2wfc_A          145 KGLTCSLAPNILSQL  159 (167)
T ss_dssp             SSSSTTSHHHHHHHH
T ss_pred             CcceeccHHHHHHHh
Confidence            778999999999875

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=100.00  E-value=9.3e-35  Score=227.96  Aligned_cols=157  Identities=34%  Similarity=0.674  Sum_probs=132.5

Q ss_pred             cccccCCCccccCCCceEEe--ccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCC-ccchhhHHHhHHHHHH
Q 028808           32 YASVAVGSDIVSAAQDVSLQ--KARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCS-NQHVPSYKNNIDKFKA  108 (203)
Q Consensus        32 ~~~~~~G~~~~~~APdf~l~--~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~-~ehl~~l~~~~~~f~~  108 (203)
                      +|++++|++    ||+|+++  +.+|       ..++++|+++++||++||+|||++|||+|+ .| +|.|++++++|++
T Consensus         1 mm~~~~G~~----aP~f~l~~~~~~G-------~~~~~~l~~~~~gk~vvl~f~~~~~c~~C~~~e-~~~l~~~~~~~~~   68 (162)
T 1tp9_A            1 MAPIAVGDV----LPDGKLAYFDEQD-------QLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKH-VPGFIEKAGELKS   68 (162)
T ss_dssp             CCCCCTTCB----CCCCEEEEECTTS-------CEEEEESHHHHTTSEEEEEEESCTTCHHHHHTH-HHHHHHHHHHHHH
T ss_pred             CCcCCCCCC----CCCeEEEeecCCC-------CceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHH-HHHHHHHHHHHHH
Confidence            357899999    6999986  5442       126899999449998777777799999999 99 9999999999999


Q ss_pred             cCCcEEEEEecCCHHHHHHHHHHhCC--CCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          109 KGIDSVICVAVNDPYVMNGWAEKLQA--KDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       109 ~gv~~vi~IS~d~~~~~~~~~~~~~l--~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      +|+++|++||.|+++.+++|++++++  +  ||+++|++++++++||+.......|++.+..|++||||+|+|+++++++
T Consensus        69 ~~v~~vv~Is~d~~~~~~~~~~~~~~~~~--~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~~~vid~G~i~~~~~~~  146 (162)
T 1tp9_A           69 KGVTEILCISVNDPFVMKAWAKSYPENKH--VKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVDDLKVKAANIEG  146 (162)
T ss_dssp             TTCCCEEEEESSCHHHHHHHHHTCTTCSS--EEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEETTEEEEEEECS
T ss_pred             CCCCEEEEEECCCHHHHHHHHHhcCCCCC--eEEEECCCchHHHHcCcccccccCCCCccceeEEEEEECCEEEEEEeeC
Confidence            99854999999999999999999999  5  9999999999999999975432234333457999999999999999988


Q ss_pred             CCCCcccCCHHHHHhcC
Q 028808          187 APSKMKVSGGDVILGQI  203 (203)
Q Consensus       187 ~~~~~~~~~a~~vL~~l  203 (203)
                       +++.+.+++++||++|
T Consensus       147 -~~~~~~~~~~~vl~~l  162 (162)
T 1tp9_A          147 -GGEFTVSSAEDILKDL  162 (162)
T ss_dssp             -SSCCSSCSHHHHHTTC
T ss_pred             -CCCCccCCHHHHHhhC
Confidence             7666677999999987

>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A

Probab=100.00  E-value=1.4e-34  Score=239.43  Aligned_cols=148  Identities=18%  Similarity=0.318  Sum_probs=126.6

Q ss_pred             ccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCc
Q 028808           33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID  112 (203)
Q Consensus        33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~  112 (203)
                      ..+++|++    ||||+++...+     ++++++++|+| |+|||+||+|||++|||+|+.| ++.|++++++|+++|++
T Consensus        24 ~~~~vG~~----APdF~~~a~l~-----d~~g~~vsLsd-~~GK~vVL~FyP~d~TpvCt~E-~~~f~~~~~eF~~~g~~   92 (219)
T 3tue_A           24 GNAKINSP----APSFEEVALMP-----NGSFKKISLSS-YKGKWVVLFFYPLDFTFVCPTE-VIAFSDSVSRFNELNCE   92 (219)
T ss_dssp             CCCCTTSB----CCCCEEEEECT-----TSCEEEEEGGG-GTTSEEEEEECSCTTCSSCCHH-HHHHHTTHHHHHTTTEE
T ss_pred             cccccCCc----CCCCccccccc-----CCCCcEEehHH-hCCCEEEEEEecccCCCCCchh-HhhHHHHHhhhccCCcE
Confidence            45789999    79999765432     12238999999 5999999999999999999999 99999999999999998


Q ss_pred             EEEEEecCCHHHHHHHHHHh-------CCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEe
Q 028808          113 SVICVAVNDPYVMNGWAEKL-------QAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNV  184 (203)
Q Consensus       113 ~vi~IS~d~~~~~~~~~~~~-------~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~  184 (203)
                       |+|||+|++++|++|++++       +++  ||+++|++++++++||+..+..  |   .+.|++|||| +|+|+++++
T Consensus        93 -vigiS~Ds~~sh~~w~~~~~~~~~~~~l~--fpllsD~~~~va~~yGv~~~~~--g---~~~R~tFiIDp~g~Ir~~~~  164 (219)
T 3tue_A           93 -VLACSIDSEYAHLQWTLQDRKKGGLGTMA--IPILADKTKNIARSYGVLEESQ--G---VAYRGLFIIDPHGMLRQITV  164 (219)
T ss_dssp             -EEEEESSCHHHHHHHHHSCGGGTCCCSCS--SCEEECTTSHHHHHTTCEETTT--T---EECEEEEEECTTSBEEEEEE
T ss_pred             -EEEeeCCchhhHHHHhhhhHHhcCccccc--cccccCcccHHHHHcCCcccCC--C---eeEEEEEEECCCCeEEEEEE
Confidence             9999999999999999875       354  9999999999999999986432  2   3679999999 999999999


Q ss_pred             ecCCCCcccCCHHHHHhc
Q 028808          185 EEAPSKMKVSGGDVILGQ  202 (203)
Q Consensus       185 ~~~~~~~~~~~a~~vL~~  202 (203)
                      ++.+.   ..+++++|+.
T Consensus       165 ~~~~~---gr~~~EvLr~  179 (219)
T 3tue_A          165 NDMPV---GRSVEEVLRL  179 (219)
T ss_dssp             ECTTC---CCCHHHHHHH
T ss_pred             ecCCC---CCCHHHHHHH
Confidence            87654   3588887765

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.2e-35  Score=240.76  Aligned_cols=149  Identities=18%  Similarity=0.279  Sum_probs=126.3

Q ss_pred             ccccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcC
Q 028808           31 AYASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKG  110 (203)
Q Consensus        31 ~~~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~g  110 (203)
                      ..|.+++|++    ||||+++...+      +++++++|+| ++||++||+|||++|||+|+.| ++.|++.+++|+++|
T Consensus        19 ~~M~~~VG~~----APdF~l~a~~d------~~~~~vsLsd-~~GK~vVL~FyP~d~TpvCt~E-~~~f~~~~~~f~~~g   86 (216)
T 3sbc_A           19 SHMVAQVQKQ----APTFKKTAVVD------GVFDEVSLDK-YKGKYVVLAFIPLAFTFVSPTE-IIAFSEAAKKFEEQG   86 (216)
T ss_dssp             ---CCCTTSB----CCCCCEEEEET------TEEEEECGGG-GTTSEEEEEECSCTTSSHHHHH-HHHHHHHHHHHHHTT
T ss_pred             CcchhhcCCc----CCCCCCcceEC------CCCcEEehHH-hCCCeEEEEEEcCCCCCcCchh-hhHHHHhHHhhccCC
Confidence            3477999999    79999985421      1238999999 5999999999999999999999 999999999999999


Q ss_pred             CcEEEEEecCCHHHHHHHHHHh-------CCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEE
Q 028808          111 IDSVICVAVNDPYVMNGWAEKL-------QAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKAL  182 (203)
Q Consensus       111 v~~vi~IS~d~~~~~~~~~~~~-------~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~  182 (203)
                      ++ |++||+|++++|++|+++.       ++  +||+++|++++++++||+..+..  |   .+.|++|||| +|+|+++
T Consensus        87 ~~-vigiS~Ds~~sh~aw~~~~~~~~~~~~l--~fpllsD~~~~vak~YGv~~~~~--g---~~~R~tFiID~~G~Ir~~  158 (216)
T 3sbc_A           87 AQ-VLFASTDSEYSLLAWTNIPRKEGGLGPI--NIPLLADTNHSLSRDYGVLIEEE--G---VALRGLFIIDPKGVIRHI  158 (216)
T ss_dssp             EE-EEEEESSCHHHHHHHHTSCGGGTCCCSC--SSCEEECTTSHHHHHHTCEETTT--T---EECEEEEEECTTSBEEEE
T ss_pred             ce-EEEeecCchhhHHHHHHHHHHhCCccCc--ccceEeCCCCHHHHHcCCeeccC--C---ceeeEEEEECCCCeEEEE
Confidence            98 9999999999999999775       35  49999999999999999986432  2   2679999999 9999999


Q ss_pred             EeecCCCCcccCCHHHHHhc
Q 028808          183 NVEEAPSKMKVSGGDVILGQ  202 (203)
Q Consensus       183 ~~~~~~~~~~~~~a~~vL~~  202 (203)
                      ++++.+.+   .+++++|+.
T Consensus       159 ~v~~~~~g---rn~dEiLr~  175 (216)
T 3sbc_A          159 TINDLPVG---RNVDEALRL  175 (216)
T ss_dssp             EEECTTBC---CCHHHHHHH
T ss_pred             EEcCCCCC---CCHHHHHHH
Confidence            99986643   577777764

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=99.98  E-value=3.8e-32  Score=225.45  Aligned_cols=156  Identities=30%  Similarity=0.558  Sum_probs=130.4

Q ss_pred             ccccCCCccccCCCceEEeccccccCCCCCCce--eeecccccCCCeEEEEEeeCCCCCCCC-ccchhhHHHhHHHHHHc
Q 028808           33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFA--TTPIKDIFKGKKVVIFGLPGAYTGVCS-NQHVPSYKNNIDKFKAK  109 (203)
Q Consensus        33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~--~vsL~dl~~gk~vVL~~f~~~~cp~C~-~ehl~~l~~~~~~f~~~  109 (203)
                      |++++|++    ||+|++++.++   |     +  +++|+++++||++||+|||++|||+|+ .| +|.|++++++|+++
T Consensus         1 m~~~~G~~----aP~f~l~~~~~---g-----~~~~v~l~~~~~gk~vvl~f~~a~~cp~C~~~e-~~~l~~~~~~~~~~   67 (241)
T 1nm3_A            1 MSSMEGKK----VPQVTFRTRQG---D-----KWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSH-LPRYNELAPVFKKY   67 (241)
T ss_dssp             --CCTTSB----CCCCEEEEEET---T-----EEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTH-HHHHHHHHHHHHHT
T ss_pred             CCccCCCC----CCCeEEEcccC---C-----CceeecHHHHhCCCeEEEEEeCCCCCCCCCHHH-HHHHHHHHHHHHHC
Confidence            45789999    69999999632   2     5  899999449998888777899999999 99 99999999999999


Q ss_pred             CC-cEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEeCCEEEEEEeecCC
Q 028808          110 GI-DSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEEAP  188 (203)
Q Consensus       110 gv-~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~~~  188 (203)
                      |+ + |++||.|+++.+++|+++++++ +||+++|++++++++||+.......|++.++.|++|||.+|+|+++++++++
T Consensus        68 ~~~~-vv~is~d~~~~~~~~~~~~~~~-~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~t~li~~G~i~~~~~~~~~  145 (241)
T 1nm3_A           68 GVDD-ILVVSVNDTFVMNAWKEDEKSE-NISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLVKNGVVEKMFIEPNE  145 (241)
T ss_dssp             TCCE-EEEEESSCHHHHHHHHHHTTCT-TSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEEETTEEEEEEECCSC
T ss_pred             CCCE-EEEEEcCCHHHHHHHHHhcCCC-ceEEEECCCcHHHHHhCceeecccccCcccceeEEEEEECCEEEEEEEeccC
Confidence            99 8 9999999999999999999985 5999999999999999997643323433346789999999999999998765


Q ss_pred             CC--cccCCHHHHHhcC
Q 028808          189 SK--MKVSGGDVILGQI  203 (203)
Q Consensus       189 ~~--~~~~~a~~vL~~l  203 (203)
                      .+  ++..+++++|+.|
T Consensus       146 ~~~~~~~~~~~~il~~l  162 (241)
T 1nm3_A          146 PGDPFKVSDADTMLKYL  162 (241)
T ss_dssp             SSCCCSSSSHHHHHHHH
T ss_pred             CCccceecCHHHHHHHh
Confidence            42  3447899998764

>4h86_A Peroxiredoxin type-2; oxidoreductase; 2.00A {Saccharomyces cerevisiae} PDB: 4dsq_A 4dsr_A 4dss_A

Probab=99.97  E-value=1.8e-31  Score=216.91  Aligned_cols=169  Identities=28%  Similarity=0.442  Sum_probs=138.9

Q ss_pred             ccccccccCCCccccCCC--ceEEecc--ccc-cC-CCCCCceeeeccccc-CCCeEEEEEeeCCCCCCCCccchhhHHH
Q 028808           29 SRAYASVAVGSDIVSAAQ--DVSLQKA--RTW-DE-GVSSNFATTPIKDIF-KGKKVVIFGLPGAYTGVCSNQHVPSYKN  101 (203)
Q Consensus        29 ~~~~~~~~~G~~~~~~AP--df~l~~~--~g~-~~-G~~~~~~~vsL~dl~-~gk~vVL~~f~~~~cp~C~~ehl~~l~~  101 (203)
                      ..+.|...+|+++    |  |+++.-.  ++. .+ -..+.-++++|++++ +||+|||+++||+|||+|+.+|+|.|.+
T Consensus        20 ~~~~~~~~v~~~~----P~gdv~f~yip~~~~~~~~~~c~~P~~v~ls~~~~k~KkVVLf~vPGAFTPtCS~~hlPgf~~   95 (199)
T 4h86_A           20 HMASMSDLVNKKF----PAGDYKFQYIAISQSDADSESCKMPQTVEWSKLISENKKVIITGAPAAFSPTCTVSHIPGYIN   95 (199)
T ss_dssp             CCCCBCTTTTSBC----CCTTCEEEECCCCSSSTTSGGGTSCEEEEHHHHHHHCSEEEEEECSCTTCHHHHHTTHHHHHH
T ss_pred             hhhhhHHHhCCCC----CCCCceEEEecCCccccccccCCCCeeeEHHHHhcCCCeEEEEEeCCCcCCcCChhhChHHHH
Confidence            4456788999996    7  4554322  110 00 011223789999866 6999999999999999999999999999


Q ss_pred             hHHHH-HHcCCcEEEEEecCCHHHHHHHHHHhCCC--CceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEeCCE
Q 028808          102 NIDKF-KAKGIDSVICVAVNDPYVMNGWAEKLQAK--DVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGR  178 (203)
Q Consensus       102 ~~~~f-~~~gv~~vi~IS~d~~~~~~~~~~~~~l~--~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIIddG~  178 (203)
                      .+++| +++|+++|++||+||++++++|.++++.+  .++++++|++++++++||+..+..  +++.|++|+++|||||+
T Consensus        96 ~~d~~~k~kGvd~I~ciSVND~FVm~AW~k~~~~~~~~~i~~laD~~~eftkalGl~~~~~--~gg~RS~Rya~IVdDGv  173 (199)
T 4h86_A           96 YLDELVKEKEVDQVIVVTVDNPFANQAWAKSLGVKDTTHIKFASDPGCAFTKSIGFELAVG--DGVYWSGRWAMVVENGI  173 (199)
T ss_dssp             HHHHHHHHSCCCEEEEEESSCHHHHHHHHHHTTCCCCSSEEEEECGGGHHHHHTTCEEEEE--TTEEEECSEEEEEETTE
T ss_pred             HHHHHHHhcCCcEEEEEEcCCHHHHHHHHHHhcccccccccccCCcchHHHHhcCceeecC--CCcceeeEEEEEEECCE
Confidence            99886 88999889999999999999999998874  259999999999999999976432  34568999999999999


Q ss_pred             EEEEEeecCCC-CcccCCHHHHHhcC
Q 028808          179 IKALNVEEAPS-KMKVSGGDVILGQI  203 (203)
Q Consensus       179 I~~~~~~~~~~-~~~~~~a~~vL~~l  203 (203)
                      |++.+++++|+ ++++++||+||++|
T Consensus       174 V~~~~vE~~pg~~~~vS~ae~vL~~L  199 (199)
T 4h86_A          174 VTYAAKETNPGTDVTVSSVESVLAHL  199 (199)
T ss_dssp             EEEEEECSSTTTCCSTTSHHHHHTTC
T ss_pred             EEEEEEeCCCCCCCcccCHHHHHhcC
Confidence            99999999876 58999999999987

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=99.97  E-value=2.5e-31  Score=211.74  Aligned_cols=153  Identities=14%  Similarity=0.142  Sum_probs=125.9

Q ss_pred             cccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCC
Q 028808           32 YASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGI  111 (203)
Q Consensus        32 ~~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv  111 (203)
                      ...+++|+.+..+||+|++++.+|         ++++|++ ++||++||+|||++|||+|..| ++.|++++++|+++|+
T Consensus        18 ~~~l~~Gd~ig~~aP~f~l~~~~G---------~~v~l~d-~~Gk~vvl~f~~~~~c~~C~~e-l~~l~~l~~~~~~~~~   86 (179)
T 3ixr_A           18 GSHMNIGDTLNHSLLNHPLMLSGS---------TCKTLSD-YTNQWLVLYFYPKDNTPGSSTE-GLEFNLLLPQFEQINA   86 (179)
T ss_dssp             CCSSCTTCBCCHHHHHCCEEEGGG---------EEECGGG-GTTSEEEEEECSCTTSHHHHHH-HHHHHHHHHHHHTTTE
T ss_pred             CcccCcCcccCCcCCCeeEECCCC---------CEEeHHH-HCCCCEEEEEEcCCCCCchHHH-HHHHHHHHHHHHHCCC
Confidence            456888888444459999999986         8999999 5999888888889999999999 9999999999999999


Q ss_pred             cEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCC-CCcceEEEEEe-CCEEEEEEeecCCC
Q 028808          112 DSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLG-PRSERWSAYVE-DGRIKALNVEEAPS  189 (203)
Q Consensus       112 ~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~-~~~~r~tfIId-dG~I~~~~~~~~~~  189 (203)
                      + |++||.|+++.+++|+++++++  ||+++|++++++++||+.......|.. ....|++|||| +|+|++++.+..  
T Consensus        87 ~-vv~Vs~D~~~~~~~~~~~~~~~--f~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~~G~I~~~~~~~~--  161 (179)
T 3ixr_A           87 T-VLGVSRDSVKSHDSFCAKQGFT--FPLVSDSDAILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHRIVEAWRQVK--  161 (179)
T ss_dssp             E-EEEEESCCHHHHHHHHHHHTCC--SCEEECTTCHHHHHTTCEEEECCC--CEEEECCEEEEECTTSBEEEEECSCC--
T ss_pred             E-EEEEcCCCHHHHHHHHHHcCCc--eEEEECCchHHHHHcCCcccccccCcccCCcceEEEEECCCCEEEEEEcCCC--
Confidence            8 9999999999999999999996  999999999999999997643211110 01358899999 999999994322  


Q ss_pred             CcccCCHHHHHhc
Q 028808          190 KMKVSGGDVILGQ  202 (203)
Q Consensus       190 ~~~~~~a~~vL~~  202 (203)
                        ...+++++|+.
T Consensus       162 --~~~~~~~il~~  172 (179)
T 3ixr_A          162 --VPGHAEEVLNK  172 (179)
T ss_dssp             --STTHHHHHHHH
T ss_pred             --CCCCHHHHHHH
Confidence              23566776654

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=99.97  E-value=7.3e-30  Score=211.92  Aligned_cols=144  Identities=10%  Similarity=0.087  Sum_probs=121.0

Q ss_pred             ccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCC-----ccchhhHHHhHHHHH
Q 028808           33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCS-----NQHVPSYKNNIDKFK  107 (203)
Q Consensus        33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~-----~ehl~~l~~~~~~f~  107 (203)
                      ..+++|++    ||+|+|++.+|         ++++|++ ++||++||+|||+.|||+|+     .| ++.|++.   | 
T Consensus        20 ~~l~vG~~----APdFtL~d~~G---------~~vsLsd-~~Gk~vVL~F~ps~~cp~C~~~~~~~E-l~~~~~~---~-   80 (224)
T 3keb_A           20 DFPRKGDY----LPSFMLVDDQK---------HDAALES-FSHTPKLIVTLLSVDEDEHAGLLLLRE-TRRFLDS---W-   80 (224)
T ss_dssp             CCCCTTCB----CCCCEEEETTS---------CEEEGGG-GTTCCEEEEECSCTTCSTTTSHHHHHH-HHHHHTT---C-
T ss_pred             CcCCCCCC----CCCeEEECCCC---------CEEeHHH-hCCCcEEEEEEeCCCCCCCCCCccHHH-HHHHHHH---c-
Confidence            45899999    69999999876         8999999 59998888888888899999     99 8999987   4 


Q ss_pred             HcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeC-CchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEee
Q 028808          108 AKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDF-DGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVE  185 (203)
Q Consensus       108 ~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~-~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~  185 (203)
                       +|++ ||+||.|+++.+++|+++++++ +||+++|+ +++++++||+....... .| .+.|++|||| +|+|+|+++.
T Consensus        81 -~gv~-VvgIS~Ds~~~~~~f~~~~gl~-~fplLsD~~~~~vak~yGv~~~~~~~-~G-~~~p~tfvID~dG~I~~~~~~  155 (224)
T 3keb_A           81 -PHLK-LIVITVDSPSSLARARHEHGLP-NIALLSTLRGRDFHKRYGVLITEYPL-SG-YTSPAIILADAANVVHYSERL  155 (224)
T ss_dssp             -TTSE-EEEEESSCHHHHHHHHHHHCCT-TCEEEESTTCTTHHHHTTCBCCSTTS-TT-CBCCEEEEECTTCBEEEEEEC
T ss_pred             -CCCE-EEEEECCCHHHHHHHHHHcCCC-CceEEEcCCchHHHHHhCCccccccc-cC-CccCEEEEEcCCCEEEEEEec
Confidence             7898 9999999999999999999994 49999999 79999999998643110 11 3579999999 9999999998


Q ss_pred             cCCCCcccCCHHHHHhc
Q 028808          186 EAPSKMKVSGGDVILGQ  202 (203)
Q Consensus       186 ~~~~~~~~~~a~~vL~~  202 (203)
                      +++.  ...+.+++|+.
T Consensus       156 ~~~~--~~pd~~evl~~  170 (224)
T 3keb_A          156 ANTR--DFFDFDAIEKL  170 (224)
T ss_dssp             SBTT--CCCCHHHHHHH
T ss_pred             CCCC--CCCCHHHHHHH
Confidence            7654  24566766664

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=99.97  E-value=1.1e-30  Score=215.63  Aligned_cols=148  Identities=16%  Similarity=0.245  Sum_probs=121.5

Q ss_pred             ccccCCCccccCCCceEEecc--ccccCCCCCCceeeecccccCCC-eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHc
Q 028808           33 ASVAVGSDIVSAAQDVSLQKA--RTWDEGVSSNFATTPIKDIFKGK-KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAK  109 (203)
Q Consensus        33 ~~~~~G~~~~~~APdf~l~~~--~g~~~G~~~~~~~vsL~dl~~gk-~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~  109 (203)
                      |++++|++    ||+|++.+.  +|          +++|+++ +|| ++||+|||++|||+|+.| ++.|++++++|+++
T Consensus         1 m~l~iG~~----aP~F~l~~~~~~G----------~v~l~d~-~Gk~~vvL~f~~a~~cp~C~~e-l~~l~~l~~~f~~~   64 (220)
T 1xcc_A            1 MGYHLGAT----FPNFTAKASGIDG----------DFELYKY-IENSWAILFSHPNDFTPVCTTE-LAELGKMHEDFLKL   64 (220)
T ss_dssp             -CCCTTCB----CCCCEECBTTCSS----------CEEHHHH-TTTSEEEEECCSCTTCHHHHHH-HHHHHHTHHHHHTT
T ss_pred             CCCCCCCC----CCCcEeecccCCC----------cEeHHHH-cCCCeEEEEEECCCCCCCCHHH-HHHHHHHHHHHHHc
Confidence            35789999    699999987  53          6999994 887 899999999999999999 99999999999999


Q ss_pred             CCcEEEEEecCCHHHHHHHHH-------HhCCCCceEEEeeCCchHHHHcCCccccccccCC-CCcceEEEEEe-CCEEE
Q 028808          110 GIDSVICVAVNDPYVMNGWAE-------KLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLG-PRSERWSAYVE-DGRIK  180 (203)
Q Consensus       110 gv~~vi~IS~d~~~~~~~~~~-------~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~-~~~~r~tfIId-dG~I~  180 (203)
                      |++ ||+||+|+.+.+++|.+       +++++  ||+++|++++++++||+.......+.+ ..+.|++|||| +|+|+
T Consensus        65 ~v~-vi~vS~D~~~~~~~~~~~i~~~~~~~~~~--fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~flID~~G~I~  141 (220)
T 1xcc_A           65 NCK-LIGFSCNSKESHDKWIEDIKYYGKLNKWE--IPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIK  141 (220)
T ss_dssp             TEE-EEEEESSCHHHHHHHHHHHHHHHTCSCCC--CCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEE
T ss_pred             CCE-EEEEeCCCHHHHHHHHHHHHHHhcCCCCc--ceeEECchhHHHHHhCCCCcccccCCCCCcccceEEEECCCCEEE
Confidence            998 99999999999999988       35665  999999999999999997532111111 12579999999 99999


Q ss_pred             EEEeecCCCCcccCCHHHHHhc
Q 028808          181 ALNVEEAPSKMKVSGGDVILGQ  202 (203)
Q Consensus       181 ~~~~~~~~~~~~~~~a~~vL~~  202 (203)
                      ++++++...+   .+++++|+.
T Consensus       142 ~~~~~~~~~g---~~~~ell~~  160 (220)
T 1xcc_A          142 ATVLYPATTG---RNAHEILRV  160 (220)
T ss_dssp             EEEEECTTBC---CCHHHHHHH
T ss_pred             EEEecCCCCC---CCHHHHHHH
Confidence            9999865432   356666653

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=99.96  E-value=1.6e-29  Score=198.25  Aligned_cols=147  Identities=17%  Similarity=0.266  Sum_probs=123.2

Q ss_pred             ccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCc
Q 028808           33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID  112 (203)
Q Consensus        33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~  112 (203)
                      +.+++|++    ||+|++++.+|         ++++|++ ++||++||+||+++|||+|..| +|.|++++++|  +|++
T Consensus        15 ~~~~~G~~----~P~f~l~~~~G---------~~v~l~~-~~gk~vvl~f~~~~~c~~C~~e-~~~l~~~~~~~--~~v~   77 (165)
T 1q98_A           15 HFPQVGEI----VENFILVGNDL---------ADVALND-FASKRKVLNIFPSIDTGVCATS-VRKFNQQAAKL--SNTI   77 (165)
T ss_dssp             CCCCTTCB----CCCCEEECTTS---------CEEEGGG-GTTSEEEEEECSCSCSSCCCHH-HHHHHHHHHHS--TTEE
T ss_pred             ccCCCCCC----CCCeEEECCCC---------CEEehHH-hCCCeEEEEEECCCCCCccHHH-HHHHHHHHHHc--CCCE
Confidence            46889999    69999999876         8999999 5999665555559999999999 99999999999  7898


Q ss_pred             EEEEEecCCHHHHHHHHHHhCCCCceEEEeeC-CchHHHHcCCccccc-cccCCCCcceEEEEEe-CCEEEEEEeecCCC
Q 028808          113 SVICVAVNDPYVMNGWAEKLQAKDVIEFYGDF-DGSFHKSLDLGKDLS-AALLGPRSERWSAYVE-DGRIKALNVEEAPS  189 (203)
Q Consensus       113 ~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~-~~~v~~~yGv~~~~~-~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~  189 (203)
                       |++||.|+++.+++|+++++++ +||+++|+ +++++++||+..... ..|   ...|++|||| +|+|++++++.+..
T Consensus        78 -vv~Is~d~~~~~~~~~~~~~~~-~~~~l~D~~~~~~~~~~gv~~~~~~~~g---~~~p~~~liD~~G~i~~~~~~~~~~  152 (165)
T 1q98_A           78 -VLCISADLPFAQARFCGAEGIE-NAKTVSTFRNHALHSQLGVDIQTGPLAG---LTSRAVIVLDEQNNVLHSQLVEEIK  152 (165)
T ss_dssp             -EEEEESSCHHHHTTCTTTTTCT-TEEEEECTTCTHHHHHTTCEECSSTTTT---SBCCEEEEECTTSBEEEEEECSBTT
T ss_pred             -EEEEeCCCHHHHHHHHHHcCCC-ceEEeeccccchHHHHhCceecccccCC---ccceeEEEEcCCCEEEEEEeCCCCC
Confidence             9999999999999999999992 39999998 899999999975321 011   2458999999 99999999975432


Q ss_pred             CcccCCHHHHHhcC
Q 028808          190 KMKVSGGDVILGQI  203 (203)
Q Consensus       190 ~~~~~~a~~vL~~l  203 (203)
                        ...+.+++|+.|
T Consensus       153 --~~~~~~~~l~~l  164 (165)
T 1q98_A          153 --EEPNYEAALAVL  164 (165)
T ss_dssp             --SCCCHHHHHHTT
T ss_pred             --CCCCHHHHHHhh
Confidence              357899999875

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=99.96  E-value=4.2e-30  Score=199.71  Aligned_cols=150  Identities=15%  Similarity=0.175  Sum_probs=121.3

Q ss_pred             ccccccCCCccccCCCceE--EeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHH
Q 028808           31 AYASVAVGSDIVSAAQDVS--LQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKA  108 (203)
Q Consensus        31 ~~~~~~~G~~~~~~APdf~--l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~  108 (203)
                      .+..+++|++    ||+|+  +++.+|         ++++|++ ++||++||+||+++|||+|..| ++.|++++++|++
T Consensus         3 ~m~~l~~G~~----~P~f~~~l~~~~G---------~~~~l~~-~~gk~~vl~F~~~~~c~~C~~~-~~~l~~~~~~~~~   67 (163)
T 3gkn_A            3 AMTDAVLELP----AATFDLPLSLSGG---------TQTTLRA-HAGHWLVIYFYPKDSTPGATTE-GLDFNALLPEFDK   67 (163)
T ss_dssp             -CCCCCCCCC----GGGGGCCEECSTT---------CEECSGG-GTTSCEEEEECSCTTSHHHHHH-HHHHHHHHHHHHH
T ss_pred             cccccccCCc----CCCccccccCCCC---------CEEEHHH-hCCCcEEEEEeCCCCCCcHHHH-HHHHHHHHHHHHH
Confidence            3446899999    59999  999876         8999999 5999655544445999999999 9999999999999


Q ss_pred             cCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCC-CCcceEEEEEe-CCEEEEEEeec
Q 028808          109 KGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLG-PRSERWSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       109 ~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~-~~~~r~tfIId-dG~I~~~~~~~  186 (203)
                      +|++ ||+||.|+++.+++|+++++++  ||+++|.+++++++||+.......|.. ....|++|||| +|+|++++.+.
T Consensus        68 ~~~~-vv~vs~d~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~~~  144 (163)
T 3gkn_A           68 AGAK-ILGVSRDSVKSHDNFCAKQGFA--FPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAWRKV  144 (163)
T ss_dssp             TTCE-EEEEESSCHHHHHHHHHHHCCS--SCEEECTTCHHHHHTTCEEEEEETTEEEEEECCEEEEECTTSCEEEEECSC
T ss_pred             CCCE-EEEEeCCCHHHHHHHHHHhCCC--ceEEECCcHHHHHHhCCccccccccccccCcceEEEEECCCCeEEEEEcCC
Confidence            9998 9999999999999999999996  999999999999999997643221110 00158899999 99999999433


Q ss_pred             CCCCcccCCHHHHHhc
Q 028808          187 APSKMKVSGGDVILGQ  202 (203)
Q Consensus       187 ~~~~~~~~~a~~vL~~  202 (203)
                      .+    ..+.+++|+.
T Consensus       145 ~~----~~~~~~il~~  156 (163)
T 3gkn_A          145 KV----AGHADAVLAA  156 (163)
T ss_dssp             CS----TTHHHHHHHH
T ss_pred             Cc----ccCHHHHHHH
Confidence            22    3566676654

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=99.96  E-value=8.9e-30  Score=199.65  Aligned_cols=144  Identities=18%  Similarity=0.265  Sum_probs=122.5

Q ss_pred             ccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCc
Q 028808           33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID  112 (203)
Q Consensus        33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~  112 (203)
                      ..+++|++    ||+|++++.+|         ++++|++ ++||++||+|||++|||+|..| +|.|++++++   +|++
T Consensus        18 ~~l~~G~~----aP~f~l~~~~G---------~~~~l~~-~~Gk~vvl~f~~~~~c~~C~~~-~~~l~~~~~~---~~~~   79 (166)
T 3p7x_A           18 QQINEGDF----APDFTVLDNDL---------NQVTLAD-YAGKKKLISVVPSIDTGVCDQQ-TRKFNSDASK---EEGI   79 (166)
T ss_dssp             CCCCTTSB----CCCCEEECTTS---------CEEEGGG-GTTSCEEEEECSCTTSHHHHHH-HHHHHHHSCT---TTSE
T ss_pred             ccCCCCCC----CCCeEEEcCCC---------CEEeHHH-hCCCcEEEEEECCCCCCccHHH-HHHHHHHhhc---CCCE
Confidence            57899999    69999999886         8999999 5999887777779999999999 9999999887   7898


Q ss_pred             EEEEEecCCHHHHHHHHHHhCCCCceEEEeeC-CchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCC
Q 028808          113 SVICVAVNDPYVMNGWAEKLQAKDVIEFYGDF-DGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSK  190 (203)
Q Consensus       113 ~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~-~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~  190 (203)
                       |++||.|+++.+++|+++++++ +||+++|+ +++++++||+.....  |   ...|++|||| +|+|++++++.+.. 
T Consensus        80 -vv~is~d~~~~~~~~~~~~~~~-~~~~l~D~~~~~~~~~~gv~~~~~--g---~~~p~~~liD~~G~i~~~~~~~~~~-  151 (166)
T 3p7x_A           80 -VLTISADLPFAQKRWCASAGLD-NVITLSDHRDLSFGENYGVVMEEL--R---LLARAVFVLDADNKVVYKEIVSEGT-  151 (166)
T ss_dssp             -EEEEESSCHHHHHHHHHHHTCS-SCEEEECTTTCHHHHHHTCEETTT--T---EECCEEEEECTTCBEEEEEECSBTT-
T ss_pred             -EEEEECCCHHHHHHHHHHcCCC-ceEEccCCchhHHHHHhCCccccC--C---ceeeEEEEECCCCeEEEEEEcCCcc-
Confidence             9999999999999999999993 39999999 999999999976421  2   1368999999 99999999887543 


Q ss_pred             cccCCHHHHHhcC
Q 028808          191 MKVSGGDVILGQI  203 (203)
Q Consensus       191 ~~~~~a~~vL~~l  203 (203)
                       ...+.+++|+.|
T Consensus       152 -~~~~~~~il~~l  163 (166)
T 3p7x_A          152 -DFPDFDAALAAY  163 (166)
T ss_dssp             -SCCCHHHHHHHH
T ss_pred             -cCCCHHHHHHHH
Confidence             245677777653

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=99.96  E-value=5.6e-30  Score=211.97  Aligned_cols=146  Identities=15%  Similarity=0.219  Sum_probs=121.9

Q ss_pred             cccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCC-eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCc
Q 028808           34 SVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGK-KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID  112 (203)
Q Consensus        34 ~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk-~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~  112 (203)
                      .+++|++    ||+|++.+.+|          +++|+++ +|| ++||+|||++|||+|+.| ++.|++++++|+++|++
T Consensus         4 ~l~~G~~----aP~F~l~~~~G----------~v~l~d~-~Gk~~vvL~~~~a~~cp~C~~e-l~~l~~l~~~f~~~~v~   67 (224)
T 1prx_A            4 GLLLGDV----APNFEANTTVG----------RIRFHDF-LGDSWGILFSHPRDFTPVCTTE-LGRAAKLAPEFAKRNVK   67 (224)
T ss_dssp             -CCTTCB----CCCCEEEETTE----------EEEHHHH-HTTSEEEEEEESCSSCHHHHHH-HHHHHHHHHHHHTTTEE
T ss_pred             cCCCcCC----CCCcEEecCCC----------CEEHHHH-cCCCeEEEEEECCCCCCCcHHH-HHHHHHHHHHHHHCCCE
Confidence            4789999    69999999863          6999995 776 899999999999999999 99999999999999998


Q ss_pred             EEEEEecCCHHHHHHHHHH----------hCCCCceEEEeeCCchHHHHcCCcccccc--ccCCCCcceEEEEEe-CCEE
Q 028808          113 SVICVAVNDPYVMNGWAEK----------LQAKDVIEFYGDFDGSFHKSLDLGKDLSA--ALLGPRSERWSAYVE-DGRI  179 (203)
Q Consensus       113 ~vi~IS~d~~~~~~~~~~~----------~~l~~~fpllsD~~~~v~~~yGv~~~~~~--~g~~~~~~r~tfIId-dG~I  179 (203)
                       ||+||.|+.+.+++|+++          ++++  ||+++|.+++++++||+......  .|. ..+.|++|||| +|+|
T Consensus        68 -vi~IS~D~~~~~~~~~~~i~~~~~~~~~~~~~--fpil~D~~~~va~~ygv~~~~~~~~~g~-~~~~p~~fiID~~G~I  143 (224)
T 1prx_A           68 -LIALSIDSVEDHLAWSKDINAYNSEEPTEKLP--FPIIDDRNRELAILLGMLDPAEKDEKGM-PVTARVVFVFGPDKKL  143 (224)
T ss_dssp             -EEEEESSCHHHHHHHHHHHHHHTTSCCCSCCS--SCEEECTTCHHHHHTTSSCSCTTCSSSC-CTTCCEEEEECTTSBE
T ss_pred             -EEEEcCCCHHHHHHHHHHHHHhhCcccccCcC--cceeecCchHHHHHhCCCCcccccCCCc-cccceEEEEECCCCEE
Confidence             999999999999999987          6775  99999999999999999753211  111 23579999999 9999


Q ss_pred             EEEEeecCCCCcccCCHHHHHhc
Q 028808          180 KALNVEEAPSKMKVSGGDVILGQ  202 (203)
Q Consensus       180 ~~~~~~~~~~~~~~~~a~~vL~~  202 (203)
                      +++++++...+   .+.+++|+.
T Consensus       144 ~~~~~~~~~~g---r~~~eil~~  163 (224)
T 1prx_A          144 KLSILYPATTG---RNFDEILRV  163 (224)
T ss_dssp             EEEEECCTTBC---CCHHHHHHH
T ss_pred             EEEEecCCCCC---CCHHHHHHH
Confidence            99999865432   356666654

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=99.96  E-value=1.7e-29  Score=205.21  Aligned_cols=147  Identities=15%  Similarity=0.281  Sum_probs=125.1

Q ss_pred             ccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCc
Q 028808           33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID  112 (203)
Q Consensus        33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~  112 (203)
                      ..+++|++    ||+|++++.+|         ++++|++ ++||++||+||+++|||+|..| ++.|++++++|  +|++
T Consensus        50 ~~l~~G~~----aPdf~l~d~~G---------~~v~L~d-~~Gk~vvl~F~~~~~c~~C~~e-~~~l~~l~~~~--~~v~  112 (200)
T 3zrd_A           50 KLPQIGDK----AKDFTLVAKDL---------SDVALSS-FAGKRKVLNIFPSIDTGVCAAS-VRKFNQLAGEL--ENTV  112 (200)
T ss_dssp             CCCCTTCB----CCCCEEECTTS---------CEEEGGG-GTTSEEEEEECSCCCCSCCCHH-HHHHHHHHHTS--TTEE
T ss_pred             ccCCCCCC----CCCeEEECCCC---------CEEcHHH-hCCCcEEEEEECCCCCchhHHH-HHHHHHHHHHh--CCCE
Confidence            46899999    69999999886         8999999 5999777766669999999999 99999999999  6898


Q ss_pred             EEEEEecCCHHHHHHHHHHhCC-CCceEEEeeC-CchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCC
Q 028808          113 SVICVAVNDPYVMNGWAEKLQA-KDVIEFYGDF-DGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPS  189 (203)
Q Consensus       113 ~vi~IS~d~~~~~~~~~~~~~l-~~~fpllsD~-~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~  189 (203)
                       ||+||.|+++.+++|++++++ +  ||+++|+ +++++++||+.....  ++.....|++|||| +|+|++++++.+..
T Consensus       113 -vv~Is~D~~~~~~~~~~~~~~~~--f~~l~D~~~~~~~~~ygv~~~~~--~~~g~~~p~~~lID~~G~I~~~~~~~~~~  187 (200)
T 3zrd_A          113 -VLCISSDLPFAQSRFCGAEGLSN--VITLSTLRGADFKQAYGVAITEG--PLAGLTARAVVVLDGQDNVIYSELVNEIT  187 (200)
T ss_dssp             -EEEEESSCHHHHTTCTTTTTCTT--EEEEETTSCTHHHHHTTCEECSS--TTTTSBCCEEEEECTTSBEEEEEECSBTT
T ss_pred             -EEEEECCCHHHHHHHHHHcCCCC--ceEEecCchHHHHHHhCceeecc--cCCCccccEEEEECCCCeEEEEEecCCcc
Confidence             999999999999999999999 6  9999999 999999999975321  11112468999999 99999999986543


Q ss_pred             CcccCCHHHHHhcC
Q 028808          190 KMKVSGGDVILGQI  203 (203)
Q Consensus       190 ~~~~~~a~~vL~~l  203 (203)
                        +..+.+++|++|
T Consensus       188 --~~~~~~~~l~~L  199 (200)
T 3zrd_A          188 --TEPNYDAALAAL  199 (200)
T ss_dssp             --SCCCHHHHHHHH
T ss_pred             --cCCCHHHHHHhh
Confidence              366888888764

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=99.96  E-value=5.5e-30  Score=213.63  Aligned_cols=148  Identities=16%  Similarity=0.205  Sum_probs=121.3

Q ss_pred             ccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCC-eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCC
Q 028808           33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGK-KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGI  111 (203)
Q Consensus        33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk-~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv  111 (203)
                      |++++|++    ||+|++.+.+|          +++|+++ +|| ++||+|||++|||+|+.| ++.|++++++|+++|+
T Consensus         1 M~l~iG~~----aPdF~l~~~~G----------~v~l~d~-~Gk~~vvL~f~pa~~cpvC~~e-l~~l~~l~~ef~~~~v   64 (233)
T 2v2g_A            1 MGITLGEV----FPNFEADSTIG----------KLKFHDW-LGNSWGVLFSHPRDFTPVSTTE-LGRVIQLEGDFKKRGV   64 (233)
T ss_dssp             -CCCTTCB----CCCCEEEETTC----------CEEHHHH-HCSSEEEEEECSCSSCHHHHHH-HHHHHHTHHHHHHTTE
T ss_pred             CCCCCCCC----CCCcEEecCCC----------CEEHHHH-CCCCeEEEEEECCCCCCCcHHH-HHHHHHHHHHHHHcCC
Confidence            35789999    69999999863          6999995 887 888887789999999999 9999999999999999


Q ss_pred             cEEEEEecCCHHHHHHHHH------Hh--CCCCceEEEeeCCchHHHHcCCccccccccCC-CCcceEEEEEe-CCEEEE
Q 028808          112 DSVICVAVNDPYVMNGWAE------KL--QAKDVIEFYGDFDGSFHKSLDLGKDLSAALLG-PRSERWSAYVE-DGRIKA  181 (203)
Q Consensus       112 ~~vi~IS~d~~~~~~~~~~------~~--~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~-~~~~r~tfIId-dG~I~~  181 (203)
                      + ||+||+|+.+.+++|++      ++  +++  ||+++|++++++++||+.......+.+ ..+.|++|||| +|+|++
T Consensus        65 ~-vigIS~D~~~~~~~~~~~i~~~~~~~~~~~--fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~  141 (233)
T 2v2g_A           65 K-LIALSCDNVADHKEWSEDVKCLSGVKGDMP--YPIIADETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKL  141 (233)
T ss_dssp             E-EEEEESSCHHHHHHHHHHHHHHHTCCSSCS--SCEEECTTCHHHHHTTCEEEEEECTTCCEEECEEEEEECTTSBEEE
T ss_pred             E-EEEEcCCCHHHHHHHHHHHHHhhCcccCCc--eEEEECChHHHHHHhCCcCcccccCCCcccccceEEEECCCCEEEE
Confidence            8 99999999999999998      45  675  999999999999999997532111111 12569999999 999999


Q ss_pred             EEeecCCCCcccCCHHHHHhc
Q 028808          182 LNVEEAPSKMKVSGGDVILGQ  202 (203)
Q Consensus       182 ~~~~~~~~~~~~~~a~~vL~~  202 (203)
                      +++++...+   .+++++|+.
T Consensus       142 ~~~~~~~~g---r~~~eilr~  159 (233)
T 2v2g_A          142 SILYPATTG---RNFSEILRV  159 (233)
T ss_dssp             EEEECTTBC---CCHHHHHHH
T ss_pred             EEecCCCCC---CCHHHHHHH
Confidence            999865322   356776654

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=99.96  E-value=7.1e-30  Score=222.14  Aligned_cols=131  Identities=14%  Similarity=0.178  Sum_probs=115.2

Q ss_pred             CCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHH
Q 028808           44 AAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPY  123 (203)
Q Consensus        44 ~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~  123 (203)
                      .||+|+|++.+|         ++++|+| ++||+|||+|||++|||+|+.| ++.|++.    ...|++ |+|||.|+++
T Consensus         3 k~p~F~l~~~~G---------~~~~Lsd-~~Gk~vvl~F~p~~~tp~C~~e-~~~~~~~----~~~~~~-v~gis~D~~~   66 (322)
T 4eo3_A            3 RVKHFELLTDEG---------KTFTHVD-LYGKYTILFFFPKAGTSGSTRE-AVEFSRE----NFEKAQ-VVGISRDSVE   66 (322)
T ss_dssp             BCCCCEEEETTS---------CEEEGGG-TTTSEEEEEECSSTTSHHHHHH-HHHHHHS----CCTTEE-EEEEESCCHH
T ss_pred             CCCCcEEECCCc---------CEEeHHH-hCCCeEEEEEECCCCCCCCHHH-HHHHHHH----hhCCCE-EEEEeCCCHH
Confidence            379999999986         8999999 5999999999999999999999 9999753    234787 9999999999


Q ss_pred             HHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCCcccCCHHHHHhc
Q 028808          124 VMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSKMKVSGGDVILGQ  202 (203)
Q Consensus       124 ~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~~~~~~a~~vL~~  202 (203)
                      .+++|+++++++  ||+|+|++++++++||+...    |   .+.|+||||| +|+|++++.+..++    .|+++||+.
T Consensus        67 ~~~~f~~~~~l~--fp~l~D~~~~v~~~ygv~~~----~---~~~r~tfiId~~G~i~~~~~~v~~~----~h~~~~l~~  133 (322)
T 4eo3_A           67 ALKRFKEKNDLK--VTLLSDPEGILHEFFNVLEN----G---KTVRSTFLIDRWGFVRKEWRRVKVE----GHVQEVKEA  133 (322)
T ss_dssp             HHHHHHHHHTCC--SEEEECTTCHHHHHTTCEET----T---EECCEEEEECTTSBEEEEEESCCST----THHHHHHHH
T ss_pred             HHHHHHHhhCCc--eEEEEcCchHHHHhcCCCCC----C---cCccEEEEECCCCEEEEEEeCCCcc----ccHHHHHHH
Confidence            999999999997  99999999999999999742    1   3579999999 99999999877653    699999986


Q ss_pred             C
Q 028808          203 I  203 (203)
Q Consensus       203 l  203 (203)
                      |
T Consensus       134 ~  134 (322)
T 4eo3_A          134 L  134 (322)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=99.96  E-value=2.6e-29  Score=211.90  Aligned_cols=147  Identities=16%  Similarity=0.301  Sum_probs=123.1

Q ss_pred             cccccCCCccccCCCceEEecc-ccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcC
Q 028808           32 YASVAVGSDIVSAAQDVSLQKA-RTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKG  110 (203)
Q Consensus        32 ~~~~~~G~~~~~~APdf~l~~~-~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~g  110 (203)
                      ...+++|++    ||+|++++. ++  +|     ++++|++ ++||++||+|||++|||+|..| ++.|++++++|+++|
T Consensus        59 ~~~l~vG~~----aPdF~l~~l~d~--~G-----~~vsLsd-~kGK~vvL~F~~a~~cp~C~~e-l~~l~~l~~~~~~~g  125 (254)
T 3tjj_A           59 LSKAKISKP----APYWEGTAVIDG--EF-----KELKLTD-YRGKYLVFFFYPLDFTFVCPTE-IIAFGDRLEEFRSIN  125 (254)
T ss_dssp             CCCCCTTSB----CCCCEEEEEETT--EE-----EEEEGGG-GTTSEEEEEECSCTTCSSCCHH-HHHHHHTHHHHHTTT
T ss_pred             ccccCCCCC----CCCcEeeeecCC--CC-----cEEeHHH-HCCCeEEEEEECCCCCCchHHH-HHHHHHHHHHHHHcC
Confidence            356889999    699999865 22  22     8999999 5999877777779999999999 999999999999999


Q ss_pred             CcEEEEEecCCHHHHHHHHHHh-------CCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEE
Q 028808          111 IDSVICVAVNDPYVMNGWAEKL-------QAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKAL  182 (203)
Q Consensus       111 v~~vi~IS~d~~~~~~~~~~~~-------~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~  182 (203)
                      ++ ||+||.|+++.+++|++++       +++  ||+++|.+++++++||+.....  |   .+.|++|||| +|+|+++
T Consensus       126 v~-vv~IS~D~~~~~~~~~~~~~~~~g~~~~~--fp~l~D~~~~va~~ygv~~~~~--g---~~~p~tflID~~G~I~~~  197 (254)
T 3tjj_A          126 TE-VVACSVDSQFTHLAWINTPRRQGGLGPIR--IPLLSDLTHQISKDYGVYLEDS--G---HTLRGLFIIDDKGILRQI  197 (254)
T ss_dssp             EE-EEEEESSCHHHHHHHHTSCGGGTSCCSCS--SCEEECTTSHHHHHHTCEETTT--T---EECEEEEEECTTSBEEEE
T ss_pred             CE-EEEEcCCCHHHHHHHHHHHHHhcCCcccc--cceeeCcHHHHHHHcCCccccC--C---CccceEEEECCCCeEEEE
Confidence            98 9999999999999999887       675  9999999999999999976422  2   2568999999 9999999


Q ss_pred             EeecCCCCcccCCHHHHHhc
Q 028808          183 NVEEAPSKMKVSGGDVILGQ  202 (203)
Q Consensus       183 ~~~~~~~~~~~~~a~~vL~~  202 (203)
                      ++++.+.+   .+++++|+.
T Consensus       198 ~~~~~~~~---~~~~eil~~  214 (254)
T 3tjj_A          198 TLNDLPVG---RSVDETLRL  214 (254)
T ss_dssp             EEECTTCC---CCHHHHHHH
T ss_pred             EecCCCCC---CCHHHHHHH
Confidence            99865432   455666553

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=99.96  E-value=4.5e-29  Score=195.09  Aligned_cols=142  Identities=22%  Similarity=0.349  Sum_probs=119.8

Q ss_pred             ccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEee-CCCCCCCCccchhhHHHhHHHHHHcCC
Q 028808           33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLP-GAYTGVCSNQHVPSYKNNIDKFKAKGI  111 (203)
Q Consensus        33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~-~~~cp~C~~ehl~~l~~~~~~f~~~gv  111 (203)
                      +.+++|++    +|+|++++.+|         ++++|++ ++||++| ++|| ++|||+|..| +|.|++++++|  +|+
T Consensus        14 ~~~~~G~~----~P~f~l~~~~G---------~~v~l~~-~~gk~vv-l~F~~~~~c~~C~~~-~~~l~~~~~~~--~~v   75 (163)
T 1psq_A           14 KQLQVGDK----ALDFSLTTTDL---------SKKSLAD-FDGKKKV-LSVVPSIDTGICSTQ-TRRFNEELAGL--DNT   75 (163)
T ss_dssp             CCCCTTSB----CCCCEEECTTS---------CEEEGGG-GTTSEEE-EEECSCTTSHHHHHH-HHHHHHHTTTC--TTE
T ss_pred             CCCCCCCC----CCCEEEEcCCC---------cEeeHHH-hCCCEEE-EEEECCCCCCccHHH-HHHHHHHHHHc--CCc
Confidence            46889999    69999999876         8999999 5999654 4555 6999999999 99999999999  689


Q ss_pred             cEEEEEecCCHHHHHHHHHHhCC-CCceEEEee-CCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCC
Q 028808          112 DSVICVAVNDPYVMNGWAEKLQA-KDVIEFYGD-FDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAP  188 (203)
Q Consensus       112 ~~vi~IS~d~~~~~~~~~~~~~l-~~~fpllsD-~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~  188 (203)
                      + |++||.|+++.+++|++++++ +  ||+++| .+++++++||+....  .|+   ..|++|||| +|+|++++.+.+.
T Consensus        76 ~-vv~is~d~~~~~~~~~~~~~~~~--~~~l~D~~~~~~~~~~gv~~~~--~g~---~~p~~~liD~~G~i~~~~~g~~~  147 (163)
T 1psq_A           76 V-VLTVSMDLPFAQKRWCGAEGLDN--AIMLSDYFDHSFGRDYALLINE--WHL---LARAVFVLDTDNTIRYVEYVDNI  147 (163)
T ss_dssp             E-EEEEESSCHHHHHHHHHHHTCTT--SEEEECTTTCHHHHHHTCBCTT--TCS---BCCEEEEECTTCBEEEEEECSBT
T ss_pred             E-EEEEECCCHHHHHHHHHhcCCCC--cEEecCCchhHHHHHhCCcccc--CCc---eEEEEEEEcCCCeEEEEEecCCc
Confidence            8 999999999999999999999 6  999999 899999999997532  121   358899999 9999999998654


Q ss_pred             CCcccCCHHHHHhc
Q 028808          189 SKMKVSGGDVILGQ  202 (203)
Q Consensus       189 ~~~~~~~a~~vL~~  202 (203)
                      .  +..+++++|+.
T Consensus       148 ~--~~~~~~~~l~~  159 (163)
T 1psq_A          148 N--SEPNFEAAIAA  159 (163)
T ss_dssp             T--SCCCHHHHHHH
T ss_pred             C--CCCCHHHHHHH
Confidence            3  34566777764

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=99.96  E-value=4.2e-29  Score=208.69  Aligned_cols=147  Identities=17%  Similarity=0.296  Sum_probs=122.0

Q ss_pred             cccccCCCccccCCCceEEecc-ccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcC
Q 028808           32 YASVAVGSDIVSAAQDVSLQKA-RTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKG  110 (203)
Q Consensus        32 ~~~~~~G~~~~~~APdf~l~~~-~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~g  110 (203)
                      .+.+++|++    ||+|++++. +|  +|     ++++|++ ++||++||+||+++|||+|..| ++.|++++++|+++|
T Consensus        45 ~~~l~vG~~----aPdF~l~~~~d~--~G-----~~vsLsd-~~Gk~vvL~F~~~~~cp~C~~e-l~~l~~l~~~~~~~g  111 (240)
T 3qpm_A           45 LSKAKISKP----APQWEGTAVING--EF-----KELKLSD-YRGKYLVFFFYPLDFTFVCPTE-IIAFSDRVHEFRAIN  111 (240)
T ss_dssp             ECSCCTTSB----CCCCEEEEEETT--EE-----EEEEGGG-GTTSEEEEEECSCTTSSHHHHH-HHHHHHHHHHHHTTT
T ss_pred             cCcCCCCCC----CCCcEeeeeeCC--CC-----cEEEHHH-hCCCEEEEEEECCCCCCchHHH-HHHHHHHHHHHHHCC
Confidence            357899999    699999875 32  12     7999999 5999776666566999999999 999999999999999


Q ss_pred             CcEEEEEecCCHHHHHHHHHHh-------CCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEE
Q 028808          111 IDSVICVAVNDPYVMNGWAEKL-------QAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKAL  182 (203)
Q Consensus       111 v~~vi~IS~d~~~~~~~~~~~~-------~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~  182 (203)
                      ++ ||+||.|+++.+++|++++       +++  ||+++|++++++++||+.....  |   ...|++|||| +|+|+++
T Consensus       112 v~-vv~Is~D~~~~~~~~~~~~~~~~~~~~~~--fp~l~D~~~~v~~~ygv~~~~~--g---~~~p~~flID~~G~I~~~  183 (240)
T 3qpm_A          112 TE-VVACSVDSQFTHLAWIITPRKQGGLGPMK--IPLLSDLTHQISKDYGVYLEDQ--G---HTLRGLFIIDEKGVLRQI  183 (240)
T ss_dssp             EE-EEEEESSCHHHHHHHHHSCGGGTCCCSCS--SCEEECTTSHHHHHTTCEETTT--T---EECEEEEEECTTSBEEEE
T ss_pred             CE-EEEEECCCHHHHHHHHHHHHhhcCCCCCc--eeEEeCchHHHHHHhCCccccC--C---CccceEEEEcCCCeEEEE
Confidence            98 9999999999999999987       675  9999999999999999976432  2   2468999999 9999999


Q ss_pred             EeecCCCCcccCCHHHHHhc
Q 028808          183 NVEEAPSKMKVSGGDVILGQ  202 (203)
Q Consensus       183 ~~~~~~~~~~~~~a~~vL~~  202 (203)
                      ++++.+.   ..+++++|+.
T Consensus       184 ~~~~~~~---~~~~~eil~~  200 (240)
T 3qpm_A          184 TMNDLPV---GRSVDETLRL  200 (240)
T ss_dssp             EEECTTB---CCCHHHHHHH
T ss_pred             EecCCCC---CCCHHHHHHH
Confidence            9986543   2456666654

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.96  E-value=1e-28  Score=192.41  Aligned_cols=141  Identities=16%  Similarity=0.165  Sum_probs=119.5

Q ss_pred             cccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEee-CCCCCCCCccchhhHHHhHHHHHHcCCc
Q 028808           34 SVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLP-GAYTGVCSNQHVPSYKNNIDKFKAKGID  112 (203)
Q Consensus        34 ~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~-~~~cp~C~~ehl~~l~~~~~~f~~~gv~  112 (203)
                      ++++|++    ||+|++++.+|         ++++|++ ++||+.||++|| ++|||+|..+ +|.|++++++|+++|++
T Consensus         1 ml~~G~~----~P~f~l~~~~G---------~~~~l~~-~~gk~~vvl~F~~a~~C~~C~~~-~~~l~~~~~~~~~~~v~   65 (161)
T 3drn_A            1 MVKVGDK----APLFEGIADNG---------EKISLSD-YIGKHNIVLYFYPKDDTPGSTRE-ASAFRDNWDLLKDYDVV   65 (161)
T ss_dssp             -CCTTSB----CCCCEEEETTS---------CEEEGGG-TTTTSEEEEEECSCTTCHHHHHH-HHHHHHTHHHHHTTCEE
T ss_pred             CCCCCCc----CCCeEeecCCC---------CEEEHHH-hcCCCCEEEEEEcCCCCCchHHH-HHHHHHHHHHHHHcCCE
Confidence            3789999    69999999886         8999999 599973455566 9999999999 99999999999999998


Q ss_pred             EEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCCc
Q 028808          113 SVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSKM  191 (203)
Q Consensus       113 ~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~~  191 (203)
                       ||+||.|+++.+++|+++++++  ||+++|.+.+++++||+...       ....|++|||| +|+|++++.+....  
T Consensus        66 -vv~vs~d~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~v~~~-------~~~~P~~~lid~~G~i~~~~~g~~~~--  133 (161)
T 3drn_A           66 -VIGVSSDDINSHKRFKEKYKLP--FILVSDPDKKIRELYGAKGF-------ILPARITFVIDKKGIIRHIYNSQMNP--  133 (161)
T ss_dssp             -EEEEESCCHHHHHHHHHHTTCC--SEEEECTTSHHHHHTTCCCS-------SSCCCEEEEECTTSBEEEEEECSSCT--
T ss_pred             -EEEEeCCCHHHHHHHHHHhCCC--ceEEECCcHHHHHHcCCCCc-------CcccceEEEECCCCEEEEEEecCCCC--
Confidence             9999999999999999999997  99999999999999999731       12468899999 99999999884322  


Q ss_pred             ccCCHHHHHhc
Q 028808          192 KVSGGDVILGQ  202 (203)
Q Consensus       192 ~~~~a~~vL~~  202 (203)
                       ..+.+++|+.
T Consensus       134 -~~~~~~il~~  143 (161)
T 3drn_A          134 -ANHVNEALKA  143 (161)
T ss_dssp             -THHHHHHHHH
T ss_pred             -CcCHHHHHHH
Confidence             2456666654

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=99.96  E-value=1.4e-28  Score=203.11  Aligned_cols=147  Identities=15%  Similarity=0.261  Sum_probs=118.0

Q ss_pred             cccccCCCccccCCCceEEecc--ccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHc
Q 028808           32 YASVAVGSDIVSAAQDVSLQKA--RTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAK  109 (203)
Q Consensus        32 ~~~~~~G~~~~~~APdf~l~~~--~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~  109 (203)
                      ++.+++|++    ||+|++++.  +|       .+++++|+++++||++||+|||++|||+|..| +|.|++++++|+++
T Consensus        22 M~~l~~G~~----aP~F~l~~~~~~G-------~~~~v~L~d~~~Gk~vvl~F~patwCp~C~~e-~p~l~~l~~~~~~~   89 (221)
T 2c0d_A           22 MKLSLVTKK----AYNFTAQGLNKNN-------EIINVDLSSFIGQKYCCLLFYPLNYTFVCPTE-IIEFNKHIKDFENK   89 (221)
T ss_dssp             ----CTTSB----CCCCEEEEECTTS-------CEEEEEGGGGTTTCEEEEEECCCCTTTCCHHH-HHHHHHTHHHHHHT
T ss_pred             cccCCCCCC----CCCeEEeccccCC-------CccEEeHHHHcCCCeEEEEEEcCCCCCchHHH-HHHHHHHHHHHHHC
Confidence            345899999    699999997  53       12689999943999655544449999999999 99999999999999


Q ss_pred             CCcEEEEEecCCHHHHHHHHHHh-------CCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEE
Q 028808          110 GIDSVICVAVNDPYVMNGWAEKL-------QAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKA  181 (203)
Q Consensus       110 gv~~vi~IS~d~~~~~~~~~~~~-------~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~  181 (203)
                      |++ ||+||.|+++.+++|++++       +++  ||+++|.+++++++||+. ...  |   ...|++|||| +|+|++
T Consensus        90 ~v~-vv~Is~D~~~~~~~~~~~~~~~~g~~~~~--fp~l~D~~~~~~~~ygv~-~~~--g---~~~P~~~lID~~G~I~~  160 (221)
T 2c0d_A           90 NVE-LLGISVDSVYSHLAWKNMPIEKGGIGNVE--FTLVSDINKDISKNYNVL-YDN--S---FALRGLFIIDKNGCVRH  160 (221)
T ss_dssp             TEE-EEEEESSCHHHHHHHHHSCGGGTCCCSCS--SEEEECTTSHHHHHTTCE-ETT--T---EECEEEEEECTTSBEEE
T ss_pred             CCE-EEEEeCCCHHHHHHHHHHhhhhcCccCCc--eEEEECCchHHHHHcCCc-ccC--C---CccceEEEECCCCeEEE
Confidence            998 9999999999999999998       665  999999999999999997 321  2   2468999999 999999


Q ss_pred             EEeecCCCCcccCCHHHHHhc
Q 028808          182 LNVEEAPSKMKVSGGDVILGQ  202 (203)
Q Consensus       182 ~~~~~~~~~~~~~~a~~vL~~  202 (203)
                      +++++.+.   ..+++++++.
T Consensus       161 ~~~g~~~~---~~~~~ell~~  178 (221)
T 2c0d_A          161 QTVNDLPI---GRNVQEVLRT  178 (221)
T ss_dssp             EEEECTTC---CCCHHHHHHH
T ss_pred             EEecCCCC---CCCHHHHHHH
Confidence            99886533   2456666553

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=99.96  E-value=5e-29  Score=209.89  Aligned_cols=143  Identities=20%  Similarity=0.325  Sum_probs=121.4

Q ss_pred             cccCCCccccCCCceEEeccccccCCCCCCceeeec-cccc-CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCC
Q 028808           34 SVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPI-KDIF-KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGI  111 (203)
Q Consensus        34 ~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL-~dl~-~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv  111 (203)
                      ++.+|++    ||+|++.+.+|          +++| ++++ +||++||+|||++|||+|..| ++.|++++++|+++|+
T Consensus         4 ~~~iG~~----aPdF~l~~~~G----------~v~l~~d~l~~GK~vVL~~fpa~~CpvC~tE-l~~l~~l~~ef~~~gv   68 (249)
T 3a2v_A            4 IPLIGER----FPEMEVTTDHG----------VIKLPDHYVSQGKWFVLFSHPADFTPVCTTE-FVSFARRYEDFQRLGV   68 (249)
T ss_dssp             ECCTTSB----CCCEEEEETTE----------EEEETHHHHTTTCEEEEECCSCTTCHHHHHH-HHHHHHTHHHHHHTTE
T ss_pred             cCCCCCC----CCCeEEEcCCC----------CEecHHHHhhCCCEEEEEEEcCCCCcChHHH-HHHHHHHHHHHHhCCc
Confidence            4688999    69999999864          5999 9943 899999999999999999999 9999999999999999


Q ss_pred             cEEEEEecCCHHHHHHHHHH------hCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEe
Q 028808          112 DSVICVAVNDPYVMNGWAEK------LQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNV  184 (203)
Q Consensus       112 ~~vi~IS~d~~~~~~~~~~~------~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~  184 (203)
                      + ||+||+|+.+.+.+|.+.      .+++  ||+++|.+++++++||+.....  |  ..+.|++|||| +|+|+++++
T Consensus        69 ~-VI~VS~Ds~~~~~~w~~~~~~~~~~~i~--fPil~D~~~~ia~~ygv~~~~~--g--~~~~p~~fIID~dG~I~~~~~  141 (249)
T 3a2v_A           69 D-LIGLSVDSVFSHIKWKEWIERHIGVRIP--FPIIADPQGTVARRLGLLHAES--A--THTVRGVFIVDARGVIRTMLY  141 (249)
T ss_dssp             E-EEEEESSCHHHHHHHHHHHHHHTCCCCC--SCEEECTTSHHHHHHTCCCTTC--S--SSCCEEEEEECTTSBEEEEEE
T ss_pred             E-EEEEECCCHHHHHHHHHHHHHhcCCCCc--eeEEECCchHHHHHhCCccccC--C--CcccceEEEECCCCeEEEEEe
Confidence            8 999999999999999886      3565  9999999999999999975422  2  23579999999 999999999


Q ss_pred             ecCCCCcccCCHHHHHh
Q 028808          185 EEAPSKMKVSGGDVILG  201 (203)
Q Consensus       185 ~~~~~~~~~~~a~~vL~  201 (203)
                      ++.+.+   .+.+++|+
T Consensus       142 ~~~~~g---r~~~Ellr  155 (249)
T 3a2v_A          142 YPMELG---RLVDEILR  155 (249)
T ss_dssp             ECTTBC---CCHHHHHH
T ss_pred             cCCccc---chhHHHHH
Confidence            875432   34555554

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.96  E-value=6.4e-29  Score=203.38  Aligned_cols=149  Identities=16%  Similarity=0.257  Sum_probs=118.9

Q ss_pred             cccccccCCCccccCCCceEEecc-ccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHH
Q 028808           30 RAYASVAVGSDIVSAAQDVSLQKA-RTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKA  108 (203)
Q Consensus        30 ~~~~~~~~G~~~~~~APdf~l~~~-~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~  108 (203)
                      .....+++|++    ||+|++++. +|  +|     ++++|++ ++||++||+|+|++|||+|..| +|.|++++++|++
T Consensus        14 ~~~~~~~~G~~----aP~f~l~~~~~~--~g-----~~v~l~d-~~Gk~vvl~F~pat~C~~C~~e-~~~l~~l~~~~~~   80 (211)
T 2pn8_A           14 GTENLYFQSMP----APYWEGTAVIDG--EF-----KELKLTD-YRGKYLVFFFYPLDFTFVCPTE-IIAFGDRLEEFRS   80 (211)
T ss_dssp             -----CCSSCB----CCCCEEEEEETT--EE-----EEEEGGG-GTTSEEEEEECSCTTSSHHHHH-HHHHHHTHHHHHT
T ss_pred             CccccCCCCCc----CCCeEeecccCC--CC-----cEEEHHH-hCCCeEEEEEECCCCCCCCHHH-HHHHHHHHHHHHH
Confidence            33456889999    699999985 32  12     8999999 5999655544449999999999 9999999999999


Q ss_pred             cCCcEEEEEecCCHHHHHHHHHHh-------CCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEE
Q 028808          109 KGIDSVICVAVNDPYVMNGWAEKL-------QAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIK  180 (203)
Q Consensus       109 ~gv~~vi~IS~d~~~~~~~~~~~~-------~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~  180 (203)
                      +|++ ||+||.|+++.+++|++++       +++  ||+++|++++++++||+.....  |   ...|++|||| +|+|+
T Consensus        81 ~~v~-vv~Is~D~~~~~~~~~~~~~~~~g~~~~~--fp~l~D~~~~~~~~ygv~~~~~--g---~~~p~~~lID~~G~I~  152 (211)
T 2pn8_A           81 INTE-VVACSVDSQFTHLAWINTPRRQGGLGPIR--IPLLSDLTHQISKDYGVYLEDS--G---HTLRGLFIIDDKGILR  152 (211)
T ss_dssp             TTEE-EEEEESSCHHHHHHHHTSCGGGTCCCSCS--SCEEECTTSHHHHHTTCEETTT--T---EECEEEEEECTTSBEE
T ss_pred             CCCE-EEEEECCCHHHHHHHHHHhhhccCccCCc--eEEEECCchHHHHHcCCcccCC--C---cccceEEEECCCCEEE
Confidence            9998 9999999999999999988       665  9999999999999999975321  1   2468999999 99999


Q ss_pred             EEEeecCCCCcccCCHHHHHhc
Q 028808          181 ALNVEEAPSKMKVSGGDVILGQ  202 (203)
Q Consensus       181 ~~~~~~~~~~~~~~~a~~vL~~  202 (203)
                      ++++++.+.   ..+++++++.
T Consensus       153 ~~~~g~~~~---~~~~~ell~~  171 (211)
T 2pn8_A          153 QITLNDLPV---GRSVDETLRL  171 (211)
T ss_dssp             EEEEECTTB---CCCHHHHHHH
T ss_pred             EEEecCCCC---CCCHHHHHHH
Confidence            999886432   2466666654

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=99.96  E-value=8.1e-29  Score=194.83  Aligned_cols=146  Identities=16%  Similarity=0.263  Sum_probs=119.6

Q ss_pred             ccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCc
Q 028808           33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID  112 (203)
Q Consensus        33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~  112 (203)
                      ..+++|++    +|+|++++.+|         ++++|++ ++||++||+||+++|||+|..| ++.|++++++|  +|++
T Consensus        19 ~~l~~g~~----~P~f~l~~~~G---------~~~~l~~-~~gk~vvl~f~~~~~C~~C~~~-~~~l~~~~~~~--~~v~   81 (171)
T 2yzh_A           19 PELKVGDR----APEAVVVTKDL---------QEKIVGG-AKDVVQVIITVPSLDTPVCETE-TKKFNEIMAGM--EGVD   81 (171)
T ss_dssp             CCCCTTSB----CCCEEEEETTS---------CEEEESS-CCSSEEEEEECSCTTSHHHHHH-HHHHHHHTTTC--TTEE
T ss_pred             CcCCCCCc----CCceEEECCCC---------CEeeHHH-hCCCeEEEEEECCCCCCchHHH-HHHHHHHHHHc--CCce
Confidence            46889999    69999999876         8999999 5999766655559999999999 99999999999  7898


Q ss_pred             EEEEEecCCHHHHHHHHHHhCCCCceEEEee-CCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCC
Q 028808          113 SVICVAVNDPYVMNGWAEKLQAKDVIEFYGD-FDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSK  190 (203)
Q Consensus       113 ~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD-~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~  190 (203)
                       ||+||.|+++.+++|+++++++ +||+++| +++++ ++||+...... ..+ ...|++|||| +|+|++++++++.. 
T Consensus        82 -vv~Is~d~~~~~~~~~~~~~~~-~~~~l~D~~~~~~-~~~gv~~~~~~-~~g-~~~p~~~liD~~G~i~~~~~~~~~~-  155 (171)
T 2yzh_A           82 -VTVVSMDLPFAQKRFCESFNIQ-NVTVASDFRYRDM-EKYGVLIGEGA-LKG-ILARAVFIIDKEGKVAYVQLVPEIT-  155 (171)
T ss_dssp             -EEEEESSCHHHHHHHHHHTTCC-SSEEEECTTTCGG-GGGTCBBCSST-TTT-SBCCEEEEECTTSBEEEEEECSBTT-
T ss_pred             -EEEEeCCCHHHHHHHHHHcCCC-CeEEeecCccCcH-HHhCCEecccc-cCC-ceeeEEEEEcCCCeEEEEEeCCCcC-
Confidence             9999999999999999999993 3999999 89999 99999754211 011 2468999999 99999999875432 


Q ss_pred             cccCCHHHHHhc
Q 028808          191 MKVSGGDVILGQ  202 (203)
Q Consensus       191 ~~~~~a~~vL~~  202 (203)
                       +..+++++++.
T Consensus       156 -~~~~~~~ll~~  166 (171)
T 2yzh_A          156 -EEPNYDEVVNK  166 (171)
T ss_dssp             -SCCCCHHHHHH
T ss_pred             -CCCCHHHHHHH
Confidence             24566777654

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=99.95  E-value=2.4e-28  Score=195.78  Aligned_cols=143  Identities=19%  Similarity=0.321  Sum_probs=117.3

Q ss_pred             cCCCccccCCCceEEeccc-cccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEE
Q 028808           36 AVGSDIVSAAQDVSLQKAR-TWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSV  114 (203)
Q Consensus        36 ~~G~~~~~~APdf~l~~~~-g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~v  114 (203)
                      ++|++    ||+|++++.+ |       .+++++|+++ +||++||+||+++|||+|..| +|.|++++++|+++|++ |
T Consensus         2 ~~G~~----aP~f~l~~~~~G-------~~~~v~l~~~-~Gk~vvl~F~~~~~Cp~C~~e-~~~l~~~~~~~~~~~v~-v   67 (186)
T 1n8j_A            2 LINTK----IKPFKNQAFKNG-------EFIEVTEKDT-EGRWSVFFFYPADFTFVSPTE-LGDVADHYEELQKLGVD-V   67 (186)
T ss_dssp             CTTCB----CCCCEEEEEETT-------EEEEEEHHHH-TTSEEEEEECSCTTCSHHHHH-HHHHHHHHHHHHHTTEE-E
T ss_pred             CCCCc----CCCcEeecccCC-------cceEEEHHHH-CCCeEEEEEECCCCCCccHHH-HHHHHHHHHHHHHCCCE-E
Confidence            57888    6999999974 3       1268999994 999655554447999999999 99999999999999998 9


Q ss_pred             EEEecCCHHHHHHHHHHh----CCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCC
Q 028808          115 ICVAVNDPYVMNGWAEKL----QAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPS  189 (203)
Q Consensus       115 i~IS~d~~~~~~~~~~~~----~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~  189 (203)
                      |+||.|+++.+++|++++    +++  ||+++|.+++++++||+.....  |   ...|++|||| +|+|+++++++.+.
T Consensus        68 v~Is~d~~~~~~~~~~~~~~~~~~~--fp~l~D~~~~~~~~ygv~~~~~--g---~~~p~~~lID~~G~i~~~~~~~~~~  140 (186)
T 1n8j_A           68 YSVSTDTHFTHKAWHSSSETIAKIK--YAMIGDPTGALTRNFDNMREDE--G---LADRATFVVDPQGIIQAIEVTAEGI  140 (186)
T ss_dssp             EEEESSCHHHHHHHHHHCTTGGGCC--SEEEECTTSHHHHHTTCEETTT--T---EECEEEEEECTTSBEEEEEEECTTB
T ss_pred             EEEECCCHHHHHHHHHHcCcccCCc--eeEEECCchHHHHHhCCccCCC--C---ceeeEEEEECCCCeEEEEEecCCCC
Confidence            999999999999999999    786  9999999999999999975321  2   2468999999 99999999986432


Q ss_pred             CcccCCHHHHHhc
Q 028808          190 KMKVSGGDVILGQ  202 (203)
Q Consensus       190 ~~~~~~a~~vL~~  202 (203)
                         ..+++++++.
T Consensus       141 ---~~~~~~l~~~  150 (186)
T 1n8j_A          141 ---GRDASDLLRK  150 (186)
T ss_dssp             ---CCCHHHHHHH
T ss_pred             ---CCCHHHHHHH
Confidence               1356666654

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=99.95  E-value=6.7e-28  Score=194.94  Aligned_cols=147  Identities=19%  Similarity=0.300  Sum_probs=120.3

Q ss_pred             cccccCCCccccCCCceEEecc--ccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHc
Q 028808           32 YASVAVGSDIVSAAQDVSLQKA--RTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAK  109 (203)
Q Consensus        32 ~~~~~~G~~~~~~APdf~l~~~--~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~  109 (203)
                      ...+++|++    ||+|++++.  +|       ++++++|++ ++||++||+|||++|||+|..| ++.|++++++|+++
T Consensus         3 ~~~~~~G~~----aP~f~l~~~~~~g-------~~~~v~l~~-~~gk~vvl~F~~~~~C~~C~~~-~~~l~~l~~~~~~~   69 (202)
T 1uul_A            3 CGEAEDLHP----APDFNETALMPNG-------TFKKVALTS-YKGKWLVLFFYPMDFTFVCPTE-ICQFSDRVKEFSDI   69 (202)
T ss_dssp             -CCCCTTSB----CCCCEEEEECTTS-------CEEEEEGGG-GTTSEEEEEECSCTTCSHHHHH-HHHHHHTHHHHHTT
T ss_pred             cccccCCCc----CCCcEeeeeecCC-------CccEEEHHH-hCCCeEEEEEECCCCCCcCHHH-HHHHHHHHHHHHHC
Confidence            356889999    699999987  43       127899999 4998655554449999999999 99999999999999


Q ss_pred             CCcEEEEEecCCHHHHHHHHHHh-------CCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEE
Q 028808          110 GIDSVICVAVNDPYVMNGWAEKL-------QAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKA  181 (203)
Q Consensus       110 gv~~vi~IS~d~~~~~~~~~~~~-------~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~  181 (203)
                      |++ ||+||.|+++.+++|++++       +++  ||+++|.+++++++||+.....  |   ...|++|||| +|+|++
T Consensus        70 ~v~-vi~Is~D~~~~~~~~~~~~~~~~~~~~~~--~p~l~D~~~~~~~~ygv~~~~~--g---~~~P~~~lid~~G~i~~  141 (202)
T 1uul_A           70 GCE-VLACSMDSEYSHLAWTSIERKRGGLGQMN--IPILADKTKCIMKSYGVLKEED--G---VAYRGLFIIDPKQNLRQ  141 (202)
T ss_dssp             TEE-EEEEESSCHHHHHHHHHSCGGGTCCCSCS--SCEEECTTCHHHHHHTCEETTT--T---EECEEEEEECTTSBEEE
T ss_pred             CCE-EEEEeCCCHHHHHHHHHHHHhhCCCCCCc--eeEEECCchHHHHHcCCccCCC--C---ceeeEEEEECCCCEEEE
Confidence            998 9999999999999999998       675  9999999999999999975321  2   2468999999 999999


Q ss_pred             EEeecCCCCcccCCHHHHHhc
Q 028808          182 LNVEEAPSKMKVSGGDVILGQ  202 (203)
Q Consensus       182 ~~~~~~~~~~~~~~a~~vL~~  202 (203)
                      ++++..+.+   .+.+++++.
T Consensus       142 ~~~g~~~~~---~~~~ell~~  159 (202)
T 1uul_A          142 ITVNDLPVG---RDVDEALRL  159 (202)
T ss_dssp             EEEECTTBC---CCHHHHHHH
T ss_pred             EEeCCCCCC---CCHHHHHHH
Confidence            998865432   355555543

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=99.95  E-value=3.2e-28  Score=189.04  Aligned_cols=132  Identities=20%  Similarity=0.239  Sum_probs=113.5

Q ss_pred             cccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCC--eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHc
Q 028808           32 YASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGK--KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAK  109 (203)
Q Consensus        32 ~~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk--~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~  109 (203)
                      ...+++|++    +|+|++++.+|         ++++|+++ +||  ++||+|||++|||+|..| +|.|++++++|+++
T Consensus         4 ~~~~~~G~~----~P~f~l~~~~G---------~~v~l~~~-~gk~~~vvl~f~~~~~c~~C~~~-~~~l~~~~~~~~~~   68 (159)
T 2a4v_A            4 VNELEIGDP----IPDLSLLNEDN---------DSISLKKI-TENNRVVVFFVYPRASTPGSTRQ-ASGFRDNYQELKEY   68 (159)
T ss_dssp             TTCCCTTCB----CCSCEEECTTS---------CEEEHHHH-HHHCSEEEEEECSSSSSHHHHHH-HHHHHHHHHHHTTT
T ss_pred             CCcCCCCCC----CCCeEEECCCC---------CEEeHHHH-hCCCCeEEEEEcCCCCCCCHHHH-HHHHHHHHHHHHhC
Confidence            346889999    69999999876         89999995 776  566665679999999999 99999999999999


Q ss_pred             CCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEeCCEEEEEEeecC
Q 028808          110 GIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEEA  187 (203)
Q Consensus       110 gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~~  187 (203)
                      | + |++||.|+++.+++|+++++++  ||+++|++++++++||+..... .|    ..|++|||.+|+|++++.+..
T Consensus        69 ~-~-vv~is~d~~~~~~~~~~~~~~~--~~~l~D~~~~~~~~~gv~~~p~-~g----~~~~~~li~~G~i~~~~~g~~  137 (159)
T 2a4v_A           69 A-A-VFGLSADSVTSQKKFQSKQNLP--YHLLSDPKREFIGLLGAKKTPL-SG----SIRSHFIFVDGKLKFKRVKIS  137 (159)
T ss_dssp             C-E-EEEEESCCHHHHHHHHHHHTCS--SEEEECTTCHHHHHHTCBSSSS-SC----BCCEEEEEETTEEEEEEESCC
T ss_pred             C-c-EEEEeCCCHHHHHHHHHHhCCC--ceEEECCccHHHHHhCCccccc-CC----ccceEEEEcCCEEEEEEccCC
Confidence            9 7 9999999999999999999996  9999999999999999976421 11    357788888999999998753

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=99.95  E-value=8.6e-28  Score=196.94  Aligned_cols=147  Identities=19%  Similarity=0.305  Sum_probs=120.0

Q ss_pred             cccccCCCccccCCCceEEecc--ccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHc
Q 028808           32 YASVAVGSDIVSAAQDVSLQKA--RTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAK  109 (203)
Q Consensus        32 ~~~~~~G~~~~~~APdf~l~~~--~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~  109 (203)
                      ...+++|++    ||+|++++.  +|       ++++++|+++++||++||+|+|++|||+|..| ++.|++++++|+++
T Consensus        18 ~~~l~~G~~----aP~f~l~~~~~~G-------~~~~v~l~d~~~gk~vvl~F~pa~~C~~C~~~-~~~l~~l~~~~~~~   85 (213)
T 2i81_A           18 GSPTYVGKE----APFFKAEAVFGDN-------SFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSE-IIALDKALDAFHER   85 (213)
T ss_dssp             --CCCBTSB----CCCCEEEEECTTS-------CEEEEEGGGGTTTCEEEEEECSCTTSSHHHHH-HHHHHHTHHHHHHT
T ss_pred             CccccCCCc----CCCeEeeccccCC-------ceeEEeHHHHcCCCeEEEEEEcCCCCCCCHHH-HHHHHHHHHHHHHC
Confidence            346889999    699999987  43       23689999943999765555459999999999 99999999999999


Q ss_pred             CCcEEEEEecCCHHHHHHHHHHh-------CCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEE
Q 028808          110 GIDSVICVAVNDPYVMNGWAEKL-------QAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKA  181 (203)
Q Consensus       110 gv~~vi~IS~d~~~~~~~~~~~~-------~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~  181 (203)
                      |++ ||+||.|+++.+++|++++       +++  ||+++|++++++++||+..+   .|   ...|++|||| +|+|++
T Consensus        86 ~v~-vv~Is~D~~~~~~~~~~~~~~~~g~~~~~--fp~l~D~~~~~~~~ygv~~~---~g---~~~p~~~lID~~G~i~~  156 (213)
T 2i81_A           86 NVE-LLGCSVDSKYTHLAWKKTPLAKGGIGNIK--HTLLSDITKSISKDYNVLFD---DS---VSLRAFVLIDMNGIVQH  156 (213)
T ss_dssp             TEE-EEEEESSCHHHHHHHHSSCGGGTCCCSCS--SEEEECTTSHHHHHTTCEET---TT---EECEEEEEECTTSBEEE
T ss_pred             CCE-EEEEeCCCHHHHHHHHHHHHhhCCccCCC--ceEEECCchHHHHHhCCccc---cC---CcccEEEEECCCCEEEE
Confidence            998 9999999999999999988       675  99999999999999999751   12   2468999999 999999


Q ss_pred             EEeecCCCCcccCCHHHHHhc
Q 028808          182 LNVEEAPSKMKVSGGDVILGQ  202 (203)
Q Consensus       182 ~~~~~~~~~~~~~~a~~vL~~  202 (203)
                      +++++.+.+   .+.+++++.
T Consensus       157 ~~~~~~~~~---~~~~ell~~  174 (213)
T 2i81_A          157 LLVNNLAIG---RSVDEILRI  174 (213)
T ss_dssp             EEEECTTCC---CCHHHHHHH
T ss_pred             EEecCCCCC---CCHHHHHHH
Confidence            998865432   355555543

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=99.95  E-value=4e-27  Score=187.62  Aligned_cols=134  Identities=19%  Similarity=0.356  Sum_probs=112.9

Q ss_pred             ccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEee-CCCCCCCCccchhhHHHhHHHHHHcCCcE
Q 028808           35 VAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLP-GAYTGVCSNQHVPSYKNNIDKFKAKGIDS  113 (203)
Q Consensus        35 ~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~-~~~cp~C~~ehl~~l~~~~~~f~~~gv~~  113 (203)
                      +++|++    ||+|++++.+|..     ++++++|++ ++||++| ++|| ++|||+|..+ ++.|++++++|+++|++ 
T Consensus         1 ~~~G~~----~P~f~l~~~~g~~-----~~~~~~l~~-~~gk~vv-l~F~~a~~C~~C~~~-~~~l~~~~~~~~~~~v~-   67 (187)
T 1we0_A            1 SLIGTE----VQPFRAQAFQSGK-----DFFEVTEAD-LKGKWSI-VVFYPADFSFVCPTE-LEDVQKEYAELKKLGVE-   67 (187)
T ss_dssp             CCTTCB----CCCCEEEEECSSS-----CCEEEETTT-TSSSEEE-EEECSCTTCSSCTHH-HHHHHHHHHHHHHTTEE-
T ss_pred             CCCCCc----CCCeEEeccCCCc-----cceEecHHH-HCCCCEE-EEEECCCCCcchHHH-HHHHHHHHHHHHHcCCE-
Confidence            467888    6999999987600     113999999 5998554 5566 9999999999 99999999999999998 


Q ss_pred             EEEEecCCHHHHHHHHHHh----CCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCC
Q 028808          114 VICVAVNDPYVMNGWAEKL----QAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAP  188 (203)
Q Consensus       114 vi~IS~d~~~~~~~~~~~~----~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~  188 (203)
                      |++||.|+++.+++|++++    +++  ||+++|.+.+++++||+.....  |   ...|++|||| +|+|++++.+..+
T Consensus        68 vv~vs~d~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~v~~~~~--g---~~~P~~~lid~~G~i~~~~~g~~~  140 (187)
T 1we0_A           68 VYSVSTDTHFVHKAWHENSPAVGSIE--YIMIGDPSQTISRQFDVLNEET--G---LADRGTFIIDPDGVIQAIEINADG  140 (187)
T ss_dssp             EEEEESSCHHHHHHHHHSCHHHHTCC--SEEEECTTCHHHHHTTCEETTT--T---EECEEEEEECTTSBEEEEEEECTT
T ss_pred             EEEEECCCHHHHHHHHHHhccccCCC--ceEEECCchHHHHHhCCCcCCC--C---ceeeEEEEECCCCeEEEEEecCCC
Confidence            9999999999999999998    786  9999999999999999975321  1   1468999999 9999999998654

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=99.95  E-value=1.5e-27  Score=184.54  Aligned_cols=142  Identities=18%  Similarity=0.402  Sum_probs=118.3

Q ss_pred             ccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCC-eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcE
Q 028808           35 VAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGK-KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDS  113 (203)
Q Consensus        35 ~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk-~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~  113 (203)
                      +++|++    ||+|++.+.+|         +.++|++ ++|| ++||.|||++|||+|..+ ++.|++++++|+++|++ 
T Consensus         9 ~~~G~~----~p~f~l~~~~G---------~~~~l~~-~~gk~~vvl~F~~a~~C~~C~~~-~~~l~~~~~~~~~~~~~-   72 (160)
T 1xvw_A            9 LNVGAT----APDFTLRDQNQ---------QLVTLRG-YRGAKNVLLVFFPLAFTGICQGE-LDQLRDHLPEFENDDSA-   72 (160)
T ss_dssp             CCTTSB----CCCCEEECTTS---------CEEEGGG-GTTTCEEEEEECSCTTSSHHHHH-HHHHHHTGGGTSSSSEE-
T ss_pred             CCCCCC----CCCeEeEcCCC---------CEEeHHH-hcCCCCEEEEEECCCCCCchHHH-HHHHHHHHHHHHHCCcE-
Confidence            899999    69999999876         8999999 5998 666655569999999999 99999999999988998 


Q ss_pred             EEEEecCCHHHHHHHHHHhCCCCceEEEeeC--CchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCC
Q 028808          114 VICVAVNDPYVMNGWAEKLQAKDVIEFYGDF--DGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSK  190 (203)
Q Consensus       114 vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~--~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~  190 (203)
                      |++||.|+++.+++|+++++++  ||+++|.  ++++++.||+.....  |+   ..|++|||| +|+|++++.+.... 
T Consensus        73 vv~is~d~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~v~~~~~--~~---p~~~~~lid~~G~i~~~~~g~~~~-  144 (160)
T 1xvw_A           73 ALAISVGPPPTHKIWATQSGFT--FPLLSDFWPHGAVSQAYGVFNEQA--GI---ANRGTFVVDRSGIIRFAEMKQPGE-  144 (160)
T ss_dssp             EEEEESCCHHHHHHHHHHHTCC--SCEEECTTTTTHHHHHTTCEETTT--TE---ECSEEEEECTTSBEEEEEECCTTC-
T ss_pred             EEEEeCCCHHHHHHHHHhcCCC--ceEEecCCcChHHHHHcCCccccC--CC---eeeeEEEECCCCeEEEEEecCCCC-
Confidence            9999999999999999999996  9999995  999999999974311  11   234899999 99999999886332 


Q ss_pred             cccCCHHHHHhc
Q 028808          191 MKVSGGDVILGQ  202 (203)
Q Consensus       191 ~~~~~a~~vL~~  202 (203)
                        ..+.+++++.
T Consensus       145 --~~~~~~l~~~  154 (160)
T 1xvw_A          145 --VRDQRLWTDA  154 (160)
T ss_dssp             --CCCHHHHHHH
T ss_pred             --CCCHHHHHHH
Confidence              3355665543

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=99.95  E-value=2.4e-27  Score=195.00  Aligned_cols=146  Identities=21%  Similarity=0.314  Sum_probs=118.1

Q ss_pred             ccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCc
Q 028808           33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID  112 (203)
Q Consensus        33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~  112 (203)
                      ..+++|++    ||+|++++..+ .+|     ++++|++ ++||++||+|||++|||+|..| ++.|++++++|+++|++
T Consensus        25 ~~l~~G~~----aP~f~l~~~~~-~~g-----~~v~l~d-~~Gk~vll~F~pa~~Cp~C~~~-~~~l~~l~~~~~~~~v~   92 (220)
T 1zye_A           25 PAPAVTQH----APYFKGTAVVS-GEF-----KEISLDD-FKGKYLVLFFYPLDFTFVCPTE-IIAFSDKASEFHDVNCE   92 (220)
T ss_dssp             --CCTTSB----CCCCEEEEECS-SSE-----EEEEGGG-GTTSEEEEEECSCTTCSSSHHH-HHHHHHHHHHHHHTTEE
T ss_pred             CcccCCCC----CCCcEEEeeeC-CCC-----cEEEHHH-hCCCeEEEEEECCCCCCCCHHH-HHHHHHHHHHHHHCCCE
Confidence            35889999    69999986531 123     8999999 5998666555559999999999 99999999999999998


Q ss_pred             EEEEEecCCHHHHHHHHHHh-------CCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEe
Q 028808          113 SVICVAVNDPYVMNGWAEKL-------QAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNV  184 (203)
Q Consensus       113 ~vi~IS~d~~~~~~~~~~~~-------~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~  184 (203)
                       ||+||.|+.+.+++|++++       +++  ||+++|.+.+++++||+.....  |   ...|++|||| +|+|+++++
T Consensus        93 -vv~Is~D~~~~~~~~~~~~~~~~g~~~~~--fp~l~D~~~~i~~~ygv~~~~~--g---~~~P~~~liD~~G~I~~~~~  164 (220)
T 1zye_A           93 -VVAVSVDSHFSHLAWINTPRKNGGLGHMN--IALLSDLTKQISRDYGVLLEGP--G---LALRGLFIIDPNGVIKHLSV  164 (220)
T ss_dssp             -EEEEESSCHHHHHHHHTSCGGGTCCCSCS--SEEEECTTSHHHHHTTCEETTT--T---EECEEEEEECTTSBEEEEEE
T ss_pred             -EEEEECCCHHHHHHHHHHHHHhCCCcCCc--eEEEECCcHHHHHHhCCeecCC--C---cccceEEEECCCCEEEEEEe
Confidence             9999999999999999987       665  9999999999999999975322  2   2468999999 999999998


Q ss_pred             ecCCCCcccCCHHHHHh
Q 028808          185 EEAPSKMKVSGGDVILG  201 (203)
Q Consensus       185 ~~~~~~~~~~~a~~vL~  201 (203)
                      ++.+.+   .+.+++++
T Consensus       165 g~~~~~---~~~~ell~  178 (220)
T 1zye_A          165 NDLPVG---RSVEETLR  178 (220)
T ss_dssp             ECTTCC---CCHHHHHH
T ss_pred             cCCCCC---CCHHHHHH
Confidence            864432   34455544

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=99.95  E-value=2.8e-27  Score=189.43  Aligned_cols=142  Identities=19%  Similarity=0.328  Sum_probs=115.9

Q ss_pred             cCCCccccCCCceEEecc--ccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcE
Q 028808           36 AVGSDIVSAAQDVSLQKA--RTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDS  113 (203)
Q Consensus        36 ~~G~~~~~~APdf~l~~~--~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~  113 (203)
                      ++|++    ||+|++++.  +|       .+++++|+++++||++||+|+|++|||+|..+ ++.|++++++|+++|++ 
T Consensus         1 ~~G~~----aP~f~l~~~~~~G-------~~~~~~l~~~~~gk~vvl~F~~a~~C~~C~~~-~~~l~~~~~~~~~~~v~-   67 (192)
T 2h01_A            1 AFQGQ----APSFKAEAVFGDN-------TFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSE-IIALDKALDSFKERNVE-   67 (192)
T ss_dssp             CCSSB----CCCCEEEEECTTS-------CEEEEEGGGGTTTCEEEEEECSCSSCSSCCHH-HHHHHHTHHHHHHTTEE-
T ss_pred             CCCCc----CCCcEeEeeecCC-------ceeEEeHHHHcCCCeEEEEEECCCCCCCCHHH-HHHHHHHHHHHHHCCCE-
Confidence            46888    699999987  53       12689999943998655554449999999999 99999999999999998 


Q ss_pred             EEEEecCCHHHHHHHHHHh-------CCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEee
Q 028808          114 VICVAVNDPYVMNGWAEKL-------QAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVE  185 (203)
Q Consensus       114 vi~IS~d~~~~~~~~~~~~-------~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~  185 (203)
                      ||+||.|+++.+++|++++       +++  ||+++|.+++++++||+..+   .|   ...|++|||| +|+|++++++
T Consensus        68 vv~Is~d~~~~~~~~~~~~~~~~~~~~~~--~~~l~D~~~~~~~~~gv~~~---~g---~~~P~~~liD~~G~i~~~~~g  139 (192)
T 2h01_A           68 LLGCSVDSKFTHLAWKKTPLSQGGIGNIK--HTLISDISKSIARSYDVLFN---ES---VALRAFVLIDKQGVVQHLLVN  139 (192)
T ss_dssp             EEEEESSCHHHHHHHHTSCGGGTCCCSCS--SEEEECTTSHHHHHTTCEET---TT---EECCEEEEECTTSBEEEEEEG
T ss_pred             EEEEEeCCHHHHHHHHHhHHhhCCccCCC--cCeEECCcHHHHHHhCCcCc---CC---ceeeEEEEEcCCCEEEEEEeC
Confidence            9999999999999999988       665  99999999999999999751   12   1468899999 9999999998


Q ss_pred             cCCCCcccCCHHHHHh
Q 028808          186 EAPSKMKVSGGDVILG  201 (203)
Q Consensus       186 ~~~~~~~~~~a~~vL~  201 (203)
                      +.+.+   .+.+++++
T Consensus       140 ~~~~~---~~~~~l~~  152 (192)
T 2h01_A          140 NLALG---RSVDEILR  152 (192)
T ss_dssp             GGSSG---GGHHHHHH
T ss_pred             CCCCC---CCHHHHHH
Confidence            65432   24455544

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=99.94  E-value=5.4e-27  Score=193.04  Aligned_cols=146  Identities=17%  Similarity=0.286  Sum_probs=119.6

Q ss_pred             cccccCCCccccCCCceEEecc-ccccCCCCCCceeeecccccCCCeEEEEEee-CCCCCCCCccchhhHHHhHHHHHHc
Q 028808           32 YASVAVGSDIVSAAQDVSLQKA-RTWDEGVSSNFATTPIKDIFKGKKVVIFGLP-GAYTGVCSNQHVPSYKNNIDKFKAK  109 (203)
Q Consensus        32 ~~~~~~G~~~~~~APdf~l~~~-~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~-~~~cp~C~~ehl~~l~~~~~~f~~~  109 (203)
                      .+.+++|++    ||+|+|++. +|  +|     ++++|++ ++||+ ||++|| ++|||+|..| +|.|++++++|+++
T Consensus        37 ~~~l~~G~~----aP~f~l~~~~d~--~G-----~~v~l~~-~~Gk~-vll~F~a~~wC~~C~~~-~p~l~~l~~~~~~~  102 (222)
T 3ztl_A           37 TMVLLPNRP----APEFKGQAVING--EF-----KEICLKD-YRGKY-VVLFFYPADFTFVCPTE-IIAFSDQVEEFNSR  102 (222)
T ss_dssp             ---CCSSEE----CCCCEEEEEETT--EE-----EEEEGGG-GTTSE-EEEEECSCSSCSHHHHH-HHHHHHTHHHHHTT
T ss_pred             cccccCCCC----CCCeEEecccCC--CC-----cEEeHHH-hCCCe-EEEEEECCCCCCchHHH-HHHHHHHHHHHHHC
Confidence            357899999    699999966 42  23     8999999 49985 566677 5999999999 99999999999999


Q ss_pred             CCcEEEEEecCCHHHHHHHHHHh-------CCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEE
Q 028808          110 GIDSVICVAVNDPYVMNGWAEKL-------QAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKA  181 (203)
Q Consensus       110 gv~~vi~IS~d~~~~~~~~~~~~-------~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~  181 (203)
                      |++ ||+||.|+++..++|++++       +++  ||+++|.+++++++||+.....  |   ...|++|||| +|+|++
T Consensus       103 ~v~-vv~Is~D~~~~~~~~~~~~~~~~~~~~~~--~~~l~D~~~~~~~~ygv~~~~~--g---~~~P~~~lID~~G~I~~  174 (222)
T 3ztl_A          103 NCQ-VIACSTDSQYSHLAWDNLDRKSGGLGHMK--IPLLADRKQEISKAYGVFDEED--G---NAFRGLFIIDPNGILRQ  174 (222)
T ss_dssp             TEE-EEEEESSCHHHHHHHHHSCGGGTSCCSCS--SCEEECSSSHHHHHTTCBCTTT--S---SBCEEEEEECTTSEEEE
T ss_pred             CCE-EEEEECCCHHHHHHHHHHhhhhccccccc--eeEEeCCchHHHHHcCCeecCC--C---CccceEEEECCCCeEEE
Confidence            998 9999999999999999987       775  9999999999999999975431  2   2468999999 999999


Q ss_pred             EEeecCCCCcccCCHHHHHhc
Q 028808          182 LNVEEAPSKMKVSGGDVILGQ  202 (203)
Q Consensus       182 ~~~~~~~~~~~~~~a~~vL~~  202 (203)
                      ++.+..+.   ...++++|+.
T Consensus       175 ~~~g~~~~---~~~~~~il~~  192 (222)
T 3ztl_A          175 ITINDKPV---GRSVDETLRL  192 (222)
T ss_dssp             EEEECTTB---CCCHHHHHHH
T ss_pred             EEecCCCC---CCCHHHHHHH
Confidence            99987543   2346666654

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=99.94  E-value=9.5e-27  Score=187.19  Aligned_cols=140  Identities=17%  Similarity=0.276  Sum_probs=116.3

Q ss_pred             ccCCCccccCCCceEEecc--ccccCCCCCCce---eeecccccCCCeEEEEEee-CCCCCCCCccchhhHHHhHHHHHH
Q 028808           35 VAVGSDIVSAAQDVSLQKA--RTWDEGVSSNFA---TTPIKDIFKGKKVVIFGLP-GAYTGVCSNQHVPSYKNNIDKFKA  108 (203)
Q Consensus        35 ~~~G~~~~~~APdf~l~~~--~g~~~G~~~~~~---~vsL~dl~~gk~vVL~~f~-~~~cp~C~~ehl~~l~~~~~~f~~  108 (203)
                      +++|++    ||+|++++.  +|         +   +++|+++++||++ |++|| ++|||+|..+ +|.|++++++|++
T Consensus         1 ~~~G~~----~P~f~l~~~~~~G---------~~~~~v~l~~~~~gk~v-vl~F~~a~~C~~C~~~-~~~l~~l~~~~~~   65 (198)
T 1zof_A            1 MVVTKL----APDFKAPAVLGNN---------EVDEHFELSKNLGKNGV-ILFFWPKDFTFVCPTE-IIAFDKRVKDFHE   65 (198)
T ss_dssp             CCTTSB----CCCCEEEEECTTS---------CEEEEEETTTSCCSSEE-EEEECSCTTCSSCCTH-HHHHHHTHHHHHH
T ss_pred             CCCCCc----CCceEeecccCCC---------cccceEEHHHHhCCCcE-EEEEECCCCCCchHHH-HHHHHHHHHHHHH
Confidence            467998    699999998  65         7   8999994389855 55566 9999999999 9999999999999


Q ss_pred             cCCcEEEEEecCCHHHHHHHHHH-------hCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEE
Q 028808          109 KGIDSVICVAVNDPYVMNGWAEK-------LQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIK  180 (203)
Q Consensus       109 ~gv~~vi~IS~d~~~~~~~~~~~-------~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~  180 (203)
                      +|++ |++||.|+++.+++|+++       ++++  ||+++|.+++++++||+....   |   ...|++|||| +|+|+
T Consensus        66 ~~v~-vv~Is~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~v~~~~---g---~~~P~~~lid~~G~i~  136 (198)
T 1zof_A           66 KGFN-VIGVSIDSEQVHFAWKNTPVEKGGIGQVS--FPMVADITKSISRDYDVLFEE---A---IALRGAFLIDKNMKVR  136 (198)
T ss_dssp             TTEE-EEEEESSCHHHHHHHHTSCGGGTCCCCCS--SCEEECTTSHHHHHTTCEETT---T---EECEEEEEEETTTEEE
T ss_pred             cCCE-EEEEECCCHHHHHHHHHhhhhcccccCce--eEEEECCchHHHHHhCCcccC---C---cccceEEEECCCCEEE
Confidence            9998 999999999999999998       7775  999999999999999997521   2   2468899999 99999


Q ss_pred             EEEeecCCCCcccCCHHHHHh
Q 028808          181 ALNVEEAPSKMKVSGGDVILG  201 (203)
Q Consensus       181 ~~~~~~~~~~~~~~~a~~vL~  201 (203)
                      +++.+..+.+   .+++++++
T Consensus       137 ~~~~g~~~~~---~~~~~l~~  154 (198)
T 1zof_A          137 HAVINDLPLG---RNADEMLR  154 (198)
T ss_dssp             EEEEESSSCC---CHHHHHHH
T ss_pred             EEEecCCCCC---CCHHHHHH
Confidence            9998854322   34555544

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=99.94  E-value=5.3e-27  Score=192.27  Aligned_cols=126  Identities=11%  Similarity=0.106  Sum_probs=113.7

Q ss_pred             cccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCC
Q 028808           32 YASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGI  111 (203)
Q Consensus        32 ~~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv  111 (203)
                      ...+++|++    ||+|++++.+|         ++++|++ ++||++||++||++|||+|..+ +|.|++++++|+++|+
T Consensus        29 ~~~l~~G~~----aP~f~l~~~~G---------~~v~l~~-~~gk~~vll~F~a~~C~~C~~~-~~~l~~l~~~~~~~~v   93 (218)
T 3u5r_E           29 SNSITLGTR----AADFVLPDAGG---------NLFTLAE-FKDSPALLVAFISNRCPFVVLI-REALAKFAGDYAGQGL   93 (218)
T ss_dssp             CCCCCTTCB----CCCCCEECTTC---------CEECGGG-GTTCSEEEEEECCSSCHHHHTT-HHHHHHHHHHHTTTTE
T ss_pred             CCcCCCCCc----CCCcEeECCCC---------CEEeHHH-hCCCCeEEEEEECCCCccHHHH-HHHHHHHHHHHHhCCc
Confidence            356899999    69999999876         8999999 5999778889999999999999 9999999999999999


Q ss_pred             cEEEEEec--------CCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEE
Q 028808          112 DSVICVAV--------NDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKAL  182 (203)
Q Consensus       112 ~~vi~IS~--------d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~  182 (203)
                      + ||+||.        |+++.+++|+++++++  ||+++|.+++++++||+..           .|++|||| +|+|+++
T Consensus        94 ~-vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~--~~~l~D~~~~~~~~~~v~~-----------~P~~~liD~~G~i~~~  159 (218)
T 3u5r_E           94 A-VVAINSNDAQAFPEETLERVGAEVKAYGYG--FPYLKDASQSVAKAYGAAC-----------TPDFFLYDRERRLVYH  159 (218)
T ss_dssp             E-EEEEECSCTTTCGGGSHHHHHHHHHHHTCC--SCEEECTTCHHHHHHTCCE-----------ESEEEEECTTCBEEEE
T ss_pred             E-EEEEECCcccccccCCHHHHHHHHHHhCCC--ccEEECCccHHHHHcCCCC-----------CCeEEEECCCCcEEEe
Confidence            8 999999        6778999999999996  9999999999999999863           47899999 9999988


Q ss_pred             Eeec
Q 028808          183 NVEE  186 (203)
Q Consensus       183 ~~~~  186 (203)
                      ...+
T Consensus       160 g~~d  163 (218)
T 3u5r_E          160 GQFD  163 (218)
T ss_dssp             ECSS
T ss_pred             cccc
Confidence            6543

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.94  E-value=1.8e-26  Score=185.40  Aligned_cols=151  Identities=13%  Similarity=0.222  Sum_probs=120.1

Q ss_pred             ccccCCCccccCCCceEEeccccc------cCCCCCCceeeecccccCCCeEEEEEee-CCCCCCCCccchhhHHHhHHH
Q 028808           33 ASVAVGSDIVSAAQDVSLQKARTW------DEGVSSNFATTPIKDIFKGKKVVIFGLP-GAYTGVCSNQHVPSYKNNIDK  105 (203)
Q Consensus        33 ~~~~~G~~~~~~APdf~l~~~~g~------~~G~~~~~~~vsL~dl~~gk~vVL~~f~-~~~cp~C~~ehl~~l~~~~~~  105 (203)
                      +.+++|++    ||+|++++.+|+      ..+.++.+++++|++ ++||++ |++|| ++|||+|..+ ++.|++++++
T Consensus         2 ~~l~~G~~----~P~f~l~~~~~~~~~~~~~~~~~G~~~~v~l~~-~~gk~v-vl~F~~a~~C~~C~~~-~~~l~~l~~~   74 (195)
T 2bmx_A            2 PLLTIGDQ----FPAYQLTALIGGDLSKVDAKQPGDYFTTITSDE-HPGKWR-VVFFWPKDFTFVCPTE-IAAFSKLNDE   74 (195)
T ss_dssp             CBCCTTCB----CCCCEEEEECSSCGGGSCCSSGGGGEEEEETTS-STTCEE-EEEECSCTTSCCCHHH-HHHHHHTHHH
T ss_pred             CcCCCCCc----CCCcCcccccccccccccccccCCCccEeeHHH-hCCCcE-EEEEEcCCCCCCcHHH-HHHHHHHHHH
Confidence            46889999    699999998620      000001127899999 599855 55566 9999999999 9999999999


Q ss_pred             HHHcCCcEEEEEecCCHHHHHHHHHHh----CCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEE
Q 028808          106 FKAKGIDSVICVAVNDPYVMNGWAEKL----QAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIK  180 (203)
Q Consensus       106 f~~~gv~~vi~IS~d~~~~~~~~~~~~----~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~  180 (203)
                      |+++|++ ||+||.|+++.+++|++++    +++  ||+++|.+.+++++||+...   .|   ...|++|||| +|+|+
T Consensus        75 ~~~~~v~-vv~Vs~d~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~v~~~---~g---~~~P~~~lid~~G~i~  145 (195)
T 2bmx_A           75 FEDRDAQ-ILGVSIDSEFAHFQWRAQHNDLKTLP--FPMLSDIKRELSQAAGVLNA---DG---VADRVTFIVDPNNEIQ  145 (195)
T ss_dssp             HHTTTEE-EEEEESSCHHHHHHHHHHCTTGGGCC--SCEEECTTSHHHHHHTCBCT---TS---SBCEEEEEECTTSBEE
T ss_pred             HHHCCCE-EEEEECCCHHHHHHHHHHhccccCCc--eeEEeCCchHHHHHhCCccc---CC---CccceEEEEcCCCeEE
Confidence            9988998 9999999999999999998    786  99999999999999999753   12   2468899999 99999


Q ss_pred             EEEeecCCCCcccCCHHHHHhc
Q 028808          181 ALNVEEAPSKMKVSGGDVILGQ  202 (203)
Q Consensus       181 ~~~~~~~~~~~~~~~a~~vL~~  202 (203)
                      +++.+..+..   .+++++++.
T Consensus       146 ~~~~g~~~~~---~~~~~l~~~  164 (195)
T 2bmx_A          146 FVSATAGSVG---RNVDEVLRV  164 (195)
T ss_dssp             EEEEECTTCC---CCHHHHHHH
T ss_pred             EEEecCCCCC---CCHHHHHHH
Confidence            9999865321   356666554

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=99.94  E-value=3.4e-26  Score=180.99  Aligned_cols=146  Identities=18%  Similarity=0.292  Sum_probs=115.2

Q ss_pred             ccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCC-CCCCCccchhhHHHhHHHHHHcCC
Q 028808           33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAY-TGVCSNQHVPSYKNNIDKFKAKGI  111 (203)
Q Consensus        33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~-cp~C~~ehl~~l~~~~~~f~~~gv  111 (203)
                      ..+++|++    ||+|++++.+|         +.++|++ ++||+ +|++||++| ||+|..+ +|.|++++++   .|+
T Consensus        16 ~~l~~G~~----~P~f~l~~~~G---------~~v~l~~-~~gk~-vvl~F~~t~~C~~C~~~-~~~l~~l~~~---~~v   76 (175)
T 1xvq_A           16 ELPAVGSP----APAFTLTGGDL---------GVISSDQ-FRGKS-VLLNIFPSVDTPVCATS-VRTFDERAAA---SGA   76 (175)
T ss_dssp             CCCCTTSB----CCCCEEECTTS---------CEEEGGG-GTTSC-EEEEECSCCCSSCCCHH-HHHHHHHHHH---TTC
T ss_pred             CCCCcCCc----CCCeEEECCCC---------CEEeHHH-cCCCE-EEEEEEeCCCCchHHHH-HHHHHHHHhh---cCC
Confidence            46889999    69999999876         8999999 49985 566788888 9999999 9999999988   689


Q ss_pred             cEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCC
Q 028808          112 DSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSK  190 (203)
Q Consensus       112 ~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~  190 (203)
                      + ||+||.|+++.+++|+++++++ +||+++|++.+++++||+...... ..+ ...|++|||| +|+|++++++...  
T Consensus        77 ~-vv~Is~D~~~~~~~~~~~~~~~-~~~~l~D~~~~~~~~~gv~~~~~~-~~g-~~~p~~~lid~~G~I~~~~~g~~~--  150 (175)
T 1xvq_A           77 T-VLCVSKDLPFAQKRFCGAEGTE-NVMPASAFRDSFGEDYGVTIADGP-MAG-LLARAIVVIGADGNVAYTELVPEI--  150 (175)
T ss_dssp             E-EEEEESSCHHHHTTCC-------CEEEEECTTSSHHHHTTCBBCSST-TTT-SBCSEEEEECTTSBEEEEEECSBT--
T ss_pred             E-EEEEECCCHHHHHHHHHHcCCC-CceEeeCCHHHHHHHhCCcccccc-cCC-cccceEEEECCCCeEEEEEECCCc--
Confidence            8 9999999999999999999993 499999999999999999754211 011 3468999999 9999999985432  


Q ss_pred             cccCCHHHHHhcC
Q 028808          191 MKVSGGDVILGQI  203 (203)
Q Consensus       191 ~~~~~a~~vL~~l  203 (203)
                      .+..+.+++|++|
T Consensus       151 ~~~~~~~~~l~~l  163 (175)
T 1xvq_A          151 AQEPNYEAALAAL  163 (175)
T ss_dssp             TCCCCHHHHHHHH
T ss_pred             CCCCCHHHHHHHH
Confidence            1356788888753

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=99.93  E-value=1.4e-26  Score=180.65  Aligned_cols=143  Identities=19%  Similarity=0.300  Sum_probs=119.4

Q ss_pred             ccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCC-CCCCCccchhhHHHhHHHHHHcCC
Q 028808           33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAY-TGVCSNQHVPSYKNNIDKFKAKGI  111 (203)
Q Consensus        33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~-cp~C~~ehl~~l~~~~~~f~~~gv  111 (203)
                      +.+++|++    +|+|++++.+|         ++++|+++ +|| ++|++||++| ||+|..+ +|.|++++++|  .++
T Consensus        16 ~~~~~G~~----~p~f~l~~~~G---------~~~~l~~~-~gk-~~vl~F~~~~~C~~C~~~-~~~l~~l~~~~--~~~   77 (167)
T 2jsy_A           16 QEVKVGDQ----APDFTVLTNSL---------EEKSLADM-KGK-VTIISVIPSIDTGVCDAQ-TRRFNEEAAKL--GDV   77 (167)
T ss_dssp             CCCCTTSC----CCCCEEEBTTC---------CEEEHHHH-TTS-CEEEEECSCSTTSHHHHT-HHHHHHHHHHH--SSC
T ss_pred             CccCCCCc----CCceEEECCCC---------CEeeHHHh-CCC-eEEEEEecCCCCCchHHH-HHHHHHHHHHc--CCC
Confidence            46889999    69999999876         89999995 998 4667889998 9999999 99999999999  789


Q ss_pred             cEEEEEecCCHHHHHHHHHHhCCCCceEEEee-CCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCC
Q 028808          112 DSVICVAVNDPYVMNGWAEKLQAKDVIEFYGD-FDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPS  189 (203)
Q Consensus       112 ~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD-~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~  189 (203)
                      + +++||.|+++.+++|+++++++ +||+++| .+++++++||+....  .|   ...|++|||| +|+|++++.+.+..
T Consensus        78 ~-vv~is~d~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~v~~~~--~g---~~~p~~~lid~~G~i~~~~~g~~~~  150 (167)
T 2jsy_A           78 N-VYTISADLPFAQARWCGANGID-KVETLSDHRDMSFGEAFGVYIKE--LR---LLARSVFVLDENGKVVYAEYVSEAT  150 (167)
T ss_dssp             E-EEEEECSSGGGTSCCGGGSSCT-TEEEEEGGGTCHHHHHTTCBBTT--TC---SBCCEEEEECTTSCEEEEEECSBTT
T ss_pred             E-EEEEECCCHHHHHHHHHhcCCC-CceEeeCCchhHHHHHhCCcccc--CC---ceeeEEEEEcCCCcEEEEEecCCcC
Confidence            8 9999999998899999999993 3999999 899999999997532  12   1358899999 99999999876432


Q ss_pred             CcccCCHHHHHhc
Q 028808          190 KMKVSGGDVILGQ  202 (203)
Q Consensus       190 ~~~~~~a~~vL~~  202 (203)
                        ...+.+++++.
T Consensus       151 --~~~~~~~l~~~  161 (167)
T 2jsy_A          151 --NHPNYEKPIEA  161 (167)
T ss_dssp             --SCCCSHHHHHH
T ss_pred             --CCCCHHHHHHH
Confidence              23456666654

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=99.93  E-value=2.8e-25  Score=173.37  Aligned_cols=137  Identities=13%  Similarity=0.174  Sum_probs=112.3

Q ss_pred             cccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCC-CCCccchhhHHHhHHHHHHcC
Q 028808           32 YASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTG-VCSNQHVPSYKNNIDKFKAKG  110 (203)
Q Consensus        32 ~~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp-~C~~ehl~~l~~~~~~f~~~g  110 (203)
                      ...+++|++    ||+|++++.+|         +.++|++ ++|| +||++||++||| +|..+ ++.|.+++++|+++|
T Consensus         4 ~~~l~~g~~----~p~f~l~~~~G---------~~~~l~~-~~gk-~vll~f~~~~C~~~C~~~-~~~l~~l~~~~~~~~   67 (174)
T 1xzo_A            4 QIKDPLNYE----VEPFTFQNQDG---------KNVSLES-LKGE-VWLADFIFTNCETICPPM-TAHMTDLQKKLKAEN   67 (174)
T ss_dssp             CCCSCCCEE----CCCCEEECTTS---------CEEETGG-GTTC-CEEEEEECSCCSSCCCSH-HHHHHHHHHHHHHTT
T ss_pred             CCcCccccc----cCCcEEEcCCC---------CEEehhh-cCCC-EEEEEEEcCCCcchhHHH-HHHHHHHHHHhhhcC
Confidence            346889999    69999999886         8999999 5998 567789999999 99999 999999999999987


Q ss_pred             --CcEEEEEecC----CHHHHHHHHHHhCCCCce---EEEeeCCchHHHHcCCc-----cccccccCCCCcceEEEEEe-
Q 028808          111 --IDSVICVAVN----DPYVMNGWAEKLQAKDVI---EFYGDFDGSFHKSLDLG-----KDLSAALLGPRSERWSAYVE-  175 (203)
Q Consensus       111 --v~~vi~IS~d----~~~~~~~~~~~~~l~~~f---pllsD~~~~v~~~yGv~-----~~~~~~g~~~~~~r~tfIId-  175 (203)
                        ++ ||+||.|    +++.+++|+++++++  |   ++++|++.+++++|++.     ......+.+....|++|||| 
T Consensus        68 ~~~~-vv~is~d~~~d~~~~~~~~~~~~~~~--~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~  144 (174)
T 1xzo_A           68 IDVR-IISFSVDPENDKPKQLKKFAANYPLS--FDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGP  144 (174)
T ss_dssp             CCCE-EEEEESCTTTCCHHHHHHHHTTSCCC--GGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECT
T ss_pred             CcEE-EEEEEeCCCCCCHHHHHHHHHHcCCC--CcceEEEeCCCHHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECC
Confidence              98 9999997    578899999999986  7   99999999988887641     11000011223457899999 


Q ss_pred             CCEEEEEEeecC
Q 028808          176 DGRIKALNVEEA  187 (203)
Q Consensus       176 dG~I~~~~~~~~  187 (203)
                      +|+|++++.+..
T Consensus       145 ~G~i~~~~~g~~  156 (174)
T 1xzo_A          145 DGKVLKDYNGVE  156 (174)
T ss_dssp             TSEEEEEEESSS
T ss_pred             CCeEEEEEcCCC
Confidence            999999998754

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=99.93  E-value=1.4e-25  Score=178.83  Aligned_cols=126  Identities=13%  Similarity=0.102  Sum_probs=112.6

Q ss_pred             cccccCCCccccCCCceEEe-ccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcC
Q 028808           32 YASVAVGSDIVSAAQDVSLQ-KARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKG  110 (203)
Q Consensus        32 ~~~~~~G~~~~~~APdf~l~-~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~g  110 (203)
                      ...+++|++    +|+|+++ +.+|         +.++|++ ++||++||++||++|||+|..+ ++.|++++++|+++|
T Consensus        15 ~~~~~~g~~----~p~f~l~~~~~G---------~~~~l~~-~~gk~~vlv~F~a~~C~~C~~~-~~~l~~l~~~~~~~~   79 (196)
T 2ywi_A           15 SNMFPLGKQ----APPFALTNVIDG---------NVVRLED-VKSDAATVIMFICNHCPFVKHV-QHELVRLANDYMPKG   79 (196)
T ss_dssp             CCCCCTTCB----CCCCEEEETTTC---------CEEEHHH-HCCSSEEEEEECCSSCHHHHHH-HHHHHHHHHHHGGGT
T ss_pred             ccCCCcCCc----CCceeeeecCCC---------CEEeHHH-hCCCCeEEEEEeCCCCccHHHH-HHHHHHHHHHHHhCC
Confidence            456889999    6999999 8876         8999999 5998667888999999999999 999999999999999


Q ss_pred             CcEEEEEec--------CCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEE
Q 028808          111 IDSVICVAV--------NDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKA  181 (203)
Q Consensus       111 v~~vi~IS~--------d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~  181 (203)
                      +. +++|+.        |+++.+++|+++++++  ||++.|.+.++++.||+..           .|++|||| +|+|++
T Consensus        80 v~-vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~v~~-----------~P~~~lid~~G~i~~  145 (196)
T 2ywi_A           80 VS-FVAINSNDAEQYPEDSPENMKKVAEELGYP--FPYLYDETQEVAKAYDAAC-----------TPDFYIFDRDLKCVY  145 (196)
T ss_dssp             CE-EEEEECSCTTTCGGGSHHHHHHHHHHHTCC--SCEEECSSCHHHHHHTCCE-----------ESEEEEEETTCBEEE
T ss_pred             cE-EEEEECCccccccccCHHHHHHHHHHcCCC--ceEEECCchHHHHHhCCCC-----------CCeEEEEcCCCeEEE
Confidence            98 999998        5678899999999996  9999999999999999853           47799999 999999


Q ss_pred             EEeec
Q 028808          182 LNVEE  186 (203)
Q Consensus       182 ~~~~~  186 (203)
                      ++..+
T Consensus       146 ~~~~~  150 (196)
T 2ywi_A          146 RGQLD  150 (196)
T ss_dssp             EECSS
T ss_pred             ccccC
Confidence            97654

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.93  E-value=1.6e-25  Score=169.34  Aligned_cols=130  Identities=8%  Similarity=0.048  Sum_probs=110.5

Q ss_pred             cCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHH---hHHHHHHcCCc
Q 028808           36 AVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKN---NIDKFKAKGID  112 (203)
Q Consensus        36 ~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~---~~~~f~~~gv~  112 (203)
                      ++|++    ||+|++++.+|         +.++|++ ++|| +||++||++|||+|..+ +|.|.+   ++++|+++|+.
T Consensus         2 ~~G~~----~p~f~l~~~~g---------~~~~l~~-~~gk-~vll~F~a~~C~~C~~~-~~~l~~~~~l~~~~~~~~~~   65 (142)
T 3ewl_A            2 NAGMK----AADFTYVTVHG---------DNSRMSR-LKAQ-YTMLFFYDPDCSNCRKF-EKLFAEIPAFVEMVENGTLR   65 (142)
T ss_dssp             CTTSB----CCCCEEECTTC---------CEEEGGG-CCCS-EEEEEECCSSCHHHHHH-HHHHHTCHHHHHHHHHTSEE
T ss_pred             CCCCc----CCCCEEECCCC---------CEEEhhh-cCCC-EEEEEEECCCCccHHHH-HHHHHHhHHHHHHhccCCeE
Confidence            57888    69999999886         8999999 5998 67778999999999999 999998   99999999998


Q ss_pred             EEEEEecC-CHHHHHHHHHHhCCCCceEEEeeCCchHHH--HcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCC
Q 028808          113 SVICVAVN-DPYVMNGWAEKLQAKDVIEFYGDFDGSFHK--SLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAP  188 (203)
Q Consensus       113 ~vi~IS~d-~~~~~~~~~~~~~l~~~fpllsD~~~~v~~--~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~  188 (203)
                       +++||.| +....++|.++++++  ||++.|.++.+.+  .||+..           .|++|||| +|+|++..     
T Consensus        66 -~v~v~~d~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~v~~-----------~P~~~lid~~G~i~~~~-----  126 (142)
T 3ewl_A           66 -VLAIYPDENREEWATKAVYMPQG--WIVGWNKAGDIRTRQLYDIRA-----------TPTIYLLDGRKRVILKD-----  126 (142)
T ss_dssp             -EEEEECSSCHHHHHHHHTTSCTT--CEEEECTTCHHHHTTCSCCCS-----------SSEEEEECTTCBEEECS-----
T ss_pred             -EEEEEecCCHHHHHHHHHHcCCC--cceeeCCccchhhHHHcCCCC-----------CCeEEEECCCCCEEecC-----
Confidence             9999998 567889999999996  9999999999977  888753           57899999 99999832     


Q ss_pred             CCcccCCHHHHHhc
Q 028808          189 SKMKVSGGDVILGQ  202 (203)
Q Consensus       189 ~~~~~~~a~~vL~~  202 (203)
                        .+.++.++.|++
T Consensus       127 --~~~~~l~~~l~~  138 (142)
T 3ewl_A          127 --TSMEQLIDYLAT  138 (142)
T ss_dssp             --CCHHHHHHHHHC
T ss_pred             --CCHHHHHHHHHH
Confidence              234556666654

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.92  E-value=7.9e-25  Score=167.06  Aligned_cols=124  Identities=21%  Similarity=0.298  Sum_probs=110.4

Q ss_pred             ccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCc
Q 028808           33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID  112 (203)
Q Consensus        33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~  112 (203)
                      |++++|++    ||+|++++ +|         +.++|++ ++|| ++|++||++|||+|..+ ++.|.+++++|+++|+.
T Consensus         1 m~l~~G~~----~P~f~l~~-~g---------~~~~l~~-~~gk-~vll~f~~~~C~~C~~~-~~~l~~l~~~~~~~~~~   63 (152)
T 3gl3_A            1 MSLDKGDK----APDFALPG-KT---------GVVKLSD-KTGS-VVYLDFWASWCGPCRQS-FPWMNQMQAKYKAKGFQ   63 (152)
T ss_dssp             -CCCTTSB----CCCCEEEB-SS---------SEEEGGG-GTTS-EEEEEEECTTCTHHHHH-HHHHHHHHHHHGGGTEE
T ss_pred             CCCCCCCc----CCceEeeC-CC---------CeEeHHH-hCCC-EEEEEEECCcCHHHHHH-HHHHHHHHHHhhcCCeE
Confidence            46889999    69999999 75         7899999 4998 56777889999999999 99999999999999998


Q ss_pred             EEEEEecC-CHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecC
Q 028808          113 SVICVAVN-DPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEA  187 (203)
Q Consensus       113 ~vi~IS~d-~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~  187 (203)
                       +++|+.| +....++|.++++++  |+++.|.+.++++.||+..           .|++|||| +|+|++.+.+..
T Consensus        64 -~v~v~~d~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~v~~-----------~P~~~lid~~G~i~~~~~g~~  126 (152)
T 3gl3_A           64 -VVAVNLDAKTGDAMKFLAQVPAE--FTVAFDPKGQTPRLYGVKG-----------MPTSFLIDRNGKVLLQHVGFR  126 (152)
T ss_dssp             -EEEEECCSSHHHHHHHHHHSCCC--SEEEECTTCHHHHHTTCCS-----------SSEEEEECTTSBEEEEEESCC
T ss_pred             -EEEEECCCCHHHHHHHHHHcCCC--CceeECCcchhHHHcCCCC-----------CCeEEEECCCCCEEEEEccCC
Confidence             9999998 567889999999996  9999999999999999853           47789999 999999998754

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.92  E-value=4.7e-25  Score=169.26  Aligned_cols=122  Identities=20%  Similarity=0.180  Sum_probs=108.6

Q ss_pred             ccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCc
Q 028808           33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID  112 (203)
Q Consensus        33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~  112 (203)
                      |.+++|++    +|+|++.+.+|         +.++|++ ++|| ++|++||++|||+|..+ +|.|++++++|+++|+.
T Consensus         1 m~l~~g~~----~p~f~l~~~~G---------~~~~l~~-~~gk-~vll~F~a~~C~~C~~~-~~~l~~l~~~~~~~~~~   64 (152)
T 2lrn_A            1 MSLATGSV----APAITGIDLKG---------NSVSLND-FKGK-YVLVDFWFAGCSWCRKE-TPYLLKTYNAFKDKGFT   64 (152)
T ss_dssp             CCSCTTEE----CCCCEEECSSS---------CEEESGG-GTTS-EEEEEEECTTCTTHHHH-HHHHHHHHHHHTTTTEE
T ss_pred             CCccCCCc----CCCceeEcCCC---------CEEeHHH-cCCC-EEEEEEECCCChhHHHH-HHHHHHHHHHhccCCeE
Confidence            45789999    69999999876         8999999 4998 56778899999999999 99999999999998998


Q ss_pred             EEEEEecCC-HHHHHHHHHHhCCCCceEEEeeC---CchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEe
Q 028808          113 SVICVAVND-PYVMNGWAEKLQAKDVIEFYGDF---DGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNV  184 (203)
Q Consensus       113 ~vi~IS~d~-~~~~~~~~~~~~l~~~fpllsD~---~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~  184 (203)
                       +++|+.|+ ....++|.++++++  ||+++|.   +.++++.||+..           .|++|||| +|+|++.++
T Consensus        65 -vv~v~~d~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~v~~-----------~P~~~lid~~G~i~~~~~  127 (152)
T 2lrn_A           65 -IYGVSTDRREEDWKKAIEEDKSY--WNQVLLQKDDVKDVLESYCIVG-----------FPHIILVDPEGKIVAKEL  127 (152)
T ss_dssp             -EEEEECCSCHHHHHHHHHHHTCC--SEEEEECHHHHHHHHHHTTCCS-----------SCEEEEECTTSEEEEECC
T ss_pred             -EEEEEccCCHHHHHHHHHHhCCC--CeEEecccchhHHHHHHhCCCc-----------CCeEEEECCCCeEEEeeC
Confidence             99999985 57889999999996  9999999   789999999853           47899999 999999975

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=99.92  E-value=3.1e-26  Score=174.21  Aligned_cols=133  Identities=17%  Similarity=0.208  Sum_probs=109.2

Q ss_pred             ccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCc
Q 028808           33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID  112 (203)
Q Consensus        33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~  112 (203)
                      ..+++|++    ||+|++ +.+|         +.++|++ ++|| +||++||++|||+|..+ +|.|++++++|+++|+.
T Consensus         5 ~~l~~G~~----~P~f~l-~~~g---------~~~~l~~-~~gk-~vll~F~a~wC~~C~~~-~~~l~~l~~~~~~~~~~   67 (143)
T 4fo5_A            5 EGVNPGDL----APRIEF-LGND---------AKASFHN-QLGR-YTLLNFWAAYDAESRAR-NVQLANEVNKFGPDKIA   67 (143)
T ss_dssp             BSSSTTSB----CCCCCC---------------CCCSCC-SSCC-EEEEEEECTTCHHHHHH-HHHHHHHHTTSCTTTEE
T ss_pred             cccCCccc----CCceEE-cCCC---------CEEEHHH-hCCC-EEEEEEEcCcCHHHHHH-HHHHHHHHHHhCcCCEE
Confidence            45889999    699999 8775         8999999 5998 67788999999999999 99999999999988998


Q ss_pred             EEEEEecC-CHHHHHHHHHHhCCCCce-EEEeeCC---chHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808          113 SVICVAVN-DPYVMNGWAEKLQAKDVI-EFYGDFD---GSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       113 ~vi~IS~d-~~~~~~~~~~~~~l~~~f-pllsD~~---~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~  186 (203)
                       |++||.| +....++|.++++++  | ++++|.+   .++++.||+..           .|++|||| +|+|++++++ 
T Consensus        68 -vv~vs~d~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~v~~-----------~P~~~lid~~G~i~~~~~~-  132 (143)
T 4fo5_A           68 -MCSISMDEKESIFTETVKIDKLD--LSTQFHEGLGKESELYKKYDLRK-----------GFKNFLINDEGVIIAANVT-  132 (143)
T ss_dssp             -EEEEECCSCHHHHHHHHHHHTCC--GGGEEECTTGGGSHHHHHTTGGG-----------CCCEEEECTTSBEEEESCC-
T ss_pred             -EEEEEccCCHHHHHHHHHHhCCC--CceeeecccccchHHHHHcCCCC-----------CCcEEEECCCCEEEEccCC-
Confidence             9999999 457889999999997  8 8999984   67899999853           47799999 9999998653 


Q ss_pred             CCCCcccCCHHHHHhcC
Q 028808          187 APSKMKVSGGDVILGQI  203 (203)
Q Consensus       187 ~~~~~~~~~a~~vL~~l  203 (203)
                            .++.++.|++|
T Consensus       133 ------~~~l~~~l~~i  143 (143)
T 4fo5_A          133 ------PEKLTEILKAI  143 (143)
T ss_dssp             ------HHHHHHHHTC-
T ss_pred             ------HHHHHHHHHhC
Confidence                  24666666654

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=99.92  E-value=3.3e-25  Score=176.60  Aligned_cols=143  Identities=10%  Similarity=0.104  Sum_probs=109.9

Q ss_pred             ccccccccccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHH
Q 028808           25 IPTSSRAYASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNID  104 (203)
Q Consensus        25 ~~~~~~~~~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~  104 (203)
                      ++.....+..+++|++    +|+|++++.+|         ++++|++ ++|| +||++||++|||+|..| +|.|+++++
T Consensus        13 ~~~~~~~~~~~~~g~~----~p~f~l~~~~G---------~~v~l~~-~~Gk-~vlv~F~atwC~~C~~~-~~~l~~l~~   76 (185)
T 2gs3_A           13 LGTENLYFQSMRCARS----MHEFSAKDIDG---------HMVNLDK-YRGF-VCIVTNVASQGGKTEVN-YTQLVDLHA   76 (185)
T ss_dssp             --CCCCSSGGGGGCCC----GGGCEEEBTTS---------CEEEGGG-GTTS-EEEEEEECSSSTTHHHH-HHHHHHHHH
T ss_pred             cchhhhhhhhccCCCC----cCCceeEcCCC---------CEeeHHH-cCCC-EEEEEEecCCCCchHHH-HHHHHHHHH
Confidence            4555555677899999    59999999886         8999999 5998 67788999999999999 999999999


Q ss_pred             HHHHcCCcEEEEEecC--------CHHHHHHHHHHhCCCCceEEEe--eCCchHHH-HcCCcccccc-cc---CCCCcce
Q 028808          105 KFKAKGIDSVICVAVN--------DPYVMNGWAEKLQAKDVIEFYG--DFDGSFHK-SLDLGKDLSA-AL---LGPRSER  169 (203)
Q Consensus       105 ~f~~~gv~~vi~IS~d--------~~~~~~~~~~~~~l~~~fplls--D~~~~v~~-~yGv~~~~~~-~g---~~~~~~r  169 (203)
                      +|+++|++ |++||.|        +++.+++|+++++++  ||+++  |.+++.++ .|+....... .|   ...+..|
T Consensus        77 ~~~~~~v~-vv~is~d~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P  153 (185)
T 2gs3_A           77 RYAECGLR-ILAFPCNQFGKQEPGSNEEIKEFAAGYNVK--FDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNF  153 (185)
T ss_dssp             HHGGGTEE-EEEEECCTTTTCCCSCHHHHHHHHHHTTCC--SEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSSSCCSSC
T ss_pred             HhhcCCeE-EEEEECcccCCCCCCCHHHHHHHHHHcCCC--CeeeeeeccCChhhhHHHHHHHhhcccccccCCcccccc
Confidence            99999998 9999976        367889999999996  99997  56665443 3421110000 01   1122357


Q ss_pred             EEEEEe-CCEEEEEEeec
Q 028808          170 WSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       170 ~tfIId-dG~I~~~~~~~  186 (203)
                      ++|||| +|+|++++.+.
T Consensus       154 ~~~lid~~G~i~~~~~g~  171 (185)
T 2gs3_A          154 TKFLIDKNGCVVKRYGPM  171 (185)
T ss_dssp             CEEEECTTSCEEEEECTT
T ss_pred             eEEEECCCCCEEEeeCCC
Confidence            899999 99999998763

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=99.92  E-value=7.1e-25  Score=167.66  Aligned_cols=137  Identities=17%  Similarity=0.203  Sum_probs=117.1

Q ss_pred             ccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEE
Q 028808           35 VAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSV  114 (203)
Q Consensus        35 ~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~v  114 (203)
                      +++|++    +|+|++.+.+|         +.++|++ ++|| ++|++||++|||+|..+ ++.|.+++++|++.++. +
T Consensus         2 ~~~G~~----~p~~~l~~~~g---------~~~~l~~-~~gk-~vll~f~~~~C~~C~~~-~~~l~~~~~~~~~~~~~-~   64 (154)
T 3kcm_A            2 SLEENP----APDFTLNTLNG---------EVVKLSD-LKGQ-VVIVNFWATWCPPCREE-IPSMMRLNAAMAGKPFR-M   64 (154)
T ss_dssp             -CTTSB----CCCCEEECTTS---------CEEEGGG-GTTS-EEEEEEECTTCHHHHHH-HHHHHHHHHHTTTSSEE-E
T ss_pred             CCCCCC----CCCeEEEcCCC---------CEEehhh-cCCC-EEEEEEECCCCHHHHHH-HHHHHHHHHHhccCCeE-E
Confidence            578999    69999999876         8999999 4998 56777889999999999 99999999999988998 9


Q ss_pred             EEEecCC--HHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCCc
Q 028808          115 ICVAVND--PYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSKM  191 (203)
Q Consensus       115 i~IS~d~--~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~~  191 (203)
                      ++|+.|.  +...++|.++++++  ||++.|.+..+++.||+..           .|++|||| +|+|++.+.+...  .
T Consensus        65 v~v~~d~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~v~~-----------~P~~~lid~~G~i~~~~~g~~~--~  129 (154)
T 3kcm_A           65 LCVSIDEGGKVAVEEFFRKTGFT--LPVLLDADKRVGKLYGTTG-----------VPETFVIDRHGVILKKVVGAME--W  129 (154)
T ss_dssp             EEEECCTTHHHHHHHHHHHHCCC--CCEEECTTCHHHHHHTCCS-----------BCEEEEECTTSBEEEEEESCCC--T
T ss_pred             EEEEcCCcchHHHHHHHHHcCCC--eeEEecCchHHHHHhCCCC-----------CCeEEEECCCCcEEEEEcCCCc--c
Confidence            9999987  67899999999996  9999999999999999853           47899999 9999999987643  2


Q ss_pred             ccCCHHHHHhcC
Q 028808          192 KVSGGDVILGQI  203 (203)
Q Consensus       192 ~~~~a~~vL~~l  203 (203)
                      +.++..+.|++|
T Consensus       130 ~~~~l~~~l~~l  141 (154)
T 3kcm_A          130 DHPEVIAFLNNE  141 (154)
T ss_dssp             TSHHHHHHHHTC
T ss_pred             ccHHHHHHHHHH
Confidence            344666666554

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=99.92  E-value=2.8e-25  Score=170.21  Aligned_cols=122  Identities=19%  Similarity=0.212  Sum_probs=109.5

Q ss_pred             ccccCCCccccCCCceEEeccccccCCCCCCceeeecc--cccCCCeEEEEEeeCCCCCC--CCccchhhHHHhHHHH-H
Q 028808           33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIK--DIFKGKKVVIFGLPGAYTGV--CSNQHVPSYKNNIDKF-K  107 (203)
Q Consensus        33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~--dl~~gk~vVL~~f~~~~cp~--C~~ehl~~l~~~~~~f-~  107 (203)
                      ..+++|++    ||+|++++.+|         +.++|+  + ++|| +||++||++|||+  |..+ +|.|++++++| +
T Consensus         3 ~~l~~G~~----~p~f~l~~~~g---------~~~~l~~~~-~~gk-~vll~F~a~~C~~v~C~~~-~~~l~~l~~~~~~   66 (150)
T 3fw2_A            3 AKSEIGKY----APFFSLPNAKG---------EKITRSSDA-FKQK-SLLINFWASWNDSISQKQS-NSELREIYKKYKK   66 (150)
T ss_dssp             CTTSTTSB----CCCCCEEBTTC---------CEECTTSTT-TTTS-EEEEEEECTTCCCHHHHHH-HHHHHHHHHHHTT
T ss_pred             ccccCCCc----CCccEeECCCC---------CEEecchhh-hCCC-EEEEEEEeCCCCchHHHHH-HHHHHHHHHHhcc
Confidence            46889999    69999999886         899999  9 5998 6777899999999  9999 99999999999 8


Q ss_pred             HcCCcEEEEEecCCH-HHHHHHHHHhCCCCceEEEeeC---CchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEE
Q 028808          108 AKGIDSVICVAVNDP-YVMNGWAEKLQAKDVIEFYGDF---DGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKAL  182 (203)
Q Consensus       108 ~~gv~~vi~IS~d~~-~~~~~~~~~~~l~~~fpllsD~---~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~  182 (203)
                      ++|+. +++||.|+. +..++|.++++++  ||++.|.   +.++++.||+..           .|++|||| +|+|+++
T Consensus        67 ~~~~~-~v~v~~d~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~v~~-----------~P~~~lid~~G~i~~~  132 (150)
T 3fw2_A           67 NKYIG-MLGISLDVDKQQWKDAIKRDTLD--WEQVCDFGGLNSEVAKQYSIYK-----------IPANILLSSDGKILAK  132 (150)
T ss_dssp             CSSEE-EEEEECCSCHHHHHHHHHHTTCC--SEEECCSCGGGCHHHHHTTCCS-----------SSEEEEECTTSBEEEE
T ss_pred             CCCeE-EEEEEcCCCHHHHHHHHHHhCCC--ceEEEcCcccchHHHHHcCCCc-----------cCeEEEECCCCEEEEc
Confidence            88998 999999965 7899999999996  9999999   679999999853           47899999 9999999


Q ss_pred             Ee
Q 028808          183 NV  184 (203)
Q Consensus       183 ~~  184 (203)
                      +.
T Consensus       133 ~~  134 (150)
T 3fw2_A          133 NL  134 (150)
T ss_dssp             SC
T ss_pred             cC
Confidence            85

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.92  E-value=3.8e-25  Score=168.00  Aligned_cols=131  Identities=9%  Similarity=0.056  Sum_probs=111.1

Q ss_pred             cccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHH---hHHHHHHcC
Q 028808           34 SVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKN---NIDKFKAKG  110 (203)
Q Consensus        34 ~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~---~~~~f~~~g  110 (203)
                      ...+|++    ||+|++++.+|         +.++|++ ++|| ++|++||++|||+|..+ +|.|.+   ++++|++.|
T Consensus         4 ~~~~G~~----ap~f~l~~~~g---------~~~~l~~-~~gk-~vll~F~a~wC~~C~~~-~~~l~~~~~l~~~~~~~~   67 (142)
T 3eur_A            4 KNRLGTK----ALNFTYTLDSG---------VKGTLYQ-FPAE-YTLLFINNPGCHACAEM-IEGLKASPVINGFTAAKK   67 (142)
T ss_dssp             TTCTTSB----CCCCEEEETTS---------CEEETTT-CCCS-EEEEEECCSSSHHHHHH-HHHHHHCHHHHHHHHTTS
T ss_pred             hhcCCCc----cCCcEEEcCCC---------CEeeHHH-cCCC-EEEEEEECCCCccHHHH-HHHHhhhHHHHHHhccCC
Confidence            4678999    69999999886         8999999 5997 56778999999999999 999999   999999999


Q ss_pred             CcEEEEEecCCH-HHHHHHHHHhCCCCceEEEeeCCch--HHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808          111 IDSVICVAVNDP-YVMNGWAEKLQAKDVIEFYGDFDGS--FHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       111 v~~vi~IS~d~~-~~~~~~~~~~~l~~~fpllsD~~~~--v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~  186 (203)
                      +. |++||.|+. ...++|.++++++  |+.+.|.+..  +++.||+.           ..|++|||| +|+|++...+ 
T Consensus        68 ~~-vi~i~~d~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~~~-  132 (142)
T 3eur_A           68 LK-VLSIYPDEELDEWKKHRNDFAKE--WTNGYDKELVIKNKNLYDLR-----------AIPTLYLLDKNKTVLLKDAT-  132 (142)
T ss_dssp             EE-EEEEECSSCHHHHHHHGGGSCTT--SEEEECTTCHHHHTTCSCCT-----------TCSEEEEECTTCBEEEEEEC-
T ss_pred             eE-EEEEEcCCCHHHHHHHHHhcccc--cccccCccchhhhhhhcCCC-----------cCCeEEEECCCCcEEecCCC-
Confidence            98 999999875 6788899999986  9999999876  67888874           358899999 9999998864 


Q ss_pred             CCCCcccCCHHHHHh
Q 028808          187 APSKMKVSGGDVILG  201 (203)
Q Consensus       187 ~~~~~~~~~a~~vL~  201 (203)
                            .++.++.|+
T Consensus       133 ------~~~l~~~l~  141 (142)
T 3eur_A          133 ------LQKVEQYLA  141 (142)
T ss_dssp             ------HHHHHHHHH
T ss_pred             ------HHHHHHHHh
Confidence                  245555554

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.92  E-value=3.8e-25  Score=175.09  Aligned_cols=133  Identities=14%  Similarity=0.226  Sum_probs=114.9

Q ss_pred             ccccccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHH
Q 028808           29 SRAYASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKA  108 (203)
Q Consensus        29 ~~~~~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~  108 (203)
                      ......+++|++    +|+|++++.+|         +.++|++ ++|| ++|++||++|||+|..+ ++.|++++++|++
T Consensus        28 ~~~~~~~~~g~~----~p~f~l~~~~G---------~~~~l~~-~~gk-~vll~F~a~~C~~C~~~-~~~l~~l~~~~~~   91 (186)
T 1jfu_A           28 VAALTMASAPLK----LPDLAFEDADG---------KPKKLSD-FRGK-TLLVNLWATWCVPCRKE-MPALDELQGKLSG   91 (186)
T ss_dssp             GTTCEECCSCCB----CCCCEEECTTS---------CEEEGGG-GTTS-EEEEEEECTTCHHHHHH-HHHHHHHHHHHCB
T ss_pred             hhhhccccCCCc----CCCcEeEcCCC---------CEeeHHH-cCCC-EEEEEEEeCCCHhHHHH-HHHHHHHHHHhcc
Confidence            444567889999    69999999886         8999999 4998 56778999999999999 9999999999988


Q ss_pred             cCCcEEEEEecCCH--HHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEee
Q 028808          109 KGIDSVICVAVNDP--YVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVE  185 (203)
Q Consensus       109 ~gv~~vi~IS~d~~--~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~  185 (203)
                      .+++ |++|+.|..  +..++|+++++++ +||+++|+++.+.+.||+....       ...|++|||| +|+|++++.+
T Consensus        92 ~~~~-vv~v~~d~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~-------~~~P~~~lid~~G~i~~~~~g  162 (186)
T 1jfu_A           92 PNFE-VVAINIDTRDPEKPKTFLKEANLT-RLGYFNDQKAKVFQDLKAIGRA-------LGMPTSVLVDPQGCEIATIAG  162 (186)
T ss_dssp             TTEE-EEEEECCCSCTTHHHHHHHHTTCC-TTCCEECTTCHHHHHHHTTTCC-------SSSSEEEEECTTSBEEEEEES
T ss_pred             CCcE-EEEEECCCCCHHHHHHHHHHcCCC-CCceEECCcchHHHHhcccccc-------CCCCEEEEECCCCCEEEEEec
Confidence            8898 999999854  6789999999995 5999999999999999986321       1358899999 9999999987


Q ss_pred             c
Q 028808          186 E  186 (203)
Q Consensus       186 ~  186 (203)
                      .
T Consensus       163 ~  163 (186)
T 1jfu_A          163 P  163 (186)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.92  E-value=8e-25  Score=165.53  Aligned_cols=134  Identities=17%  Similarity=0.138  Sum_probs=115.0

Q ss_pred             ccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCc
Q 028808           33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID  112 (203)
Q Consensus        33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~  112 (203)
                      ..+++|++    ||+|++.+.+|         +.+++++ ++|| ++|++||++|||+|..+ +|.|.+++++|+++|+.
T Consensus         3 ~~~~~G~~----~p~~~l~~~~g---------~~~~l~~-~~gk-~vll~f~~~~C~~C~~~-~~~l~~l~~~~~~~~~~   66 (148)
T 3hcz_A            3 APLLLGKK----APNLYMTDTTG---------TYRYLYD-VQAK-YTILFFWDSQCGHCQQE-TPKLYDWWLKNRAKGIQ   66 (148)
T ss_dssp             CCCCTTSB----CCCCCCBCTTS---------CBCCGGG-CCCS-EEEEEEECGGGCTTCSH-HHHHHHHHHHHGGGTEE
T ss_pred             CccCCCCc----CCceEEecCCC---------CEEEhHH-cCCC-EEEEEEECCCCccHHHH-HHHHHHHHHHhccCCEE
Confidence            45789999    69999999876         8899999 5998 56778999999999999 99999999999999998


Q ss_pred             EEEEEecC-CHHHHHHHHHHhCCCCceEEEeeCCch--HHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCC
Q 028808          113 SVICVAVN-DPYVMNGWAEKLQAKDVIEFYGDFDGS--FHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAP  188 (203)
Q Consensus       113 ~vi~IS~d-~~~~~~~~~~~~~l~~~fpllsD~~~~--v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~  188 (203)
                       +++|+.| +....++|.++++++ .|+++.|+++.  +++.||+..           .|++|||| +|+|++.+.+.  
T Consensus        67 -~v~v~~d~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~i~~-----------~P~~~lid~~G~i~~~~~g~--  131 (148)
T 3hcz_A           67 -VYAANIERKDEEWLKFIRSKKIG-GWLNVRDSKNHTDFKITYDIYA-----------TPVLYVLDKNKVIIAKRIGY--  131 (148)
T ss_dssp             -EEEEECCSSSHHHHHHHHHHTCT-TSEEEECTTCCCCHHHHHCCCS-----------SCEEEEECTTCBEEEESCCG--
T ss_pred             -EEEEEecCCHHHHHHHHHHcCCC-CceEEeccccchhHHHhcCcCC-----------CCEEEEECCCCcEEEecCCH--
Confidence             9999998 557899999999996 69999999988  999999853           47899999 99999987643  


Q ss_pred             CCcccCCHHHHHhc
Q 028808          189 SKMKVSGGDVILGQ  202 (203)
Q Consensus       189 ~~~~~~~a~~vL~~  202 (203)
                           .+.++++++
T Consensus       132 -----~~~~~~l~~  140 (148)
T 3hcz_A          132 -----ENLDDFLVQ  140 (148)
T ss_dssp             -----GGHHHHHHH
T ss_pred             -----HHHHHHHHH
Confidence                 355555543

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=99.91  E-value=1.6e-24  Score=171.34  Aligned_cols=126  Identities=16%  Similarity=0.134  Sum_probs=110.5

Q ss_pred             cccCCCccccCCCceEEecc--ccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCC
Q 028808           34 SVAVGSDIVSAAQDVSLQKA--RTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGI  111 (203)
Q Consensus        34 ~~~~G~~~~~~APdf~l~~~--~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv  111 (203)
                      ....|++    +|+|++++.  +|         +.++|++ ++|| ++|++||++|||+|..+ ++.|++++++|+++|+
T Consensus        30 ~~~~g~~----~p~f~l~~~~~~g---------~~~~l~~-~~gk-~vlv~F~a~~C~~C~~~-~~~l~~l~~~~~~~~~   93 (183)
T 3lwa_A           30 DEADRQQ----LPDIGGDSLMEEG---------TQINLSD-FENQ-VVILNAWGQWCAPCRSE-SDDLQIIHEELQAAGN   93 (183)
T ss_dssp             CGGGCCC----CCCCEEEBSSSTT---------CEEEGGG-GTTS-EEEEEEECTTCHHHHHH-HHHHHHHHHHHHHCC-
T ss_pred             ccccCCC----CCceeccccccCC---------cEecHHH-hCCC-EEEEEEECCcCHhHHHH-HHHHHHHHHHHHhcCC
Confidence            5788888    699999999  76         8999999 5998 56778999999999999 9999999999999999


Q ss_pred             ------cEEEEEecCC--HHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEE
Q 028808          112 ------DSVICVAVND--PYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKAL  182 (203)
Q Consensus       112 ------~~vi~IS~d~--~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~  182 (203)
                            . +++|+.|+  ++..++|+++++++  ||++.|.++.+.+.||...        ....|++|||| +|+|+++
T Consensus        94 ~~~~~v~-~v~v~~d~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~--------v~~~P~~~lid~~G~i~~~  162 (183)
T 3lwa_A           94 GDTPGGT-VLGINVRDYSRDIAQDFVTDNGLD--YPSIYDPPFMTAASLGGVP--------ASVIPTTIVLDKQHRPAAV  162 (183)
T ss_dssp             --CCSEE-EEEEECSCCCHHHHHHHHHHTTCC--SCEEECTTCGGGGGTTTCC--------TTCCSEEEEECTTSCEEEE
T ss_pred             CccCCcE-EEEEECCCCCHHHHHHHHHHcCCC--ccEEECCcchHHHHhccCC--------CCCCCeEEEECCCCcEEEE
Confidence                  8 99999987  78899999999997  9999999999999998532        12468899999 9999999


Q ss_pred             Eeec
Q 028808          183 NVEE  186 (203)
Q Consensus       183 ~~~~  186 (203)
                      +.+.
T Consensus       163 ~~g~  166 (183)
T 3lwa_A          163 FLRE  166 (183)
T ss_dssp             ECSC
T ss_pred             EcCC
Confidence            8754

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.91  E-value=6.7e-25  Score=168.72  Aligned_cols=120  Identities=13%  Similarity=0.225  Sum_probs=105.2

Q ss_pred             CCCccccCCCceEEecc--ccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCc-cchhhHHHhHHHHHHcCCcE
Q 028808           37 VGSDIVSAAQDVSLQKA--RTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSN-QHVPSYKNNIDKFKAKGIDS  113 (203)
Q Consensus        37 ~G~~~~~~APdf~l~~~--~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~-ehl~~l~~~~~~f~~~gv~~  113 (203)
                      .|++    ||+|++++.  +|         +.++|++ ++|| +||++||++|||+|.. . +|.|++++++|++.|+. 
T Consensus         2 ~g~~----aP~f~l~~~~~~g---------~~~~l~~-~~gk-~vlv~f~a~wC~~C~~~~-~~~l~~l~~~~~~~~v~-   64 (158)
T 3eyt_A            2 NAMK----APELQIQQWFNSA---------TDLTLAD-LRGK-VIVIEAFQMLCPGCVMHG-IPLAQKVRAAFPEDKVA-   64 (158)
T ss_dssp             CCEE----CCCCCEEEEESCS---------SCCCTGG-GTTS-EEEEEEECTTCHHHHHTH-HHHHHHHHHHSCTTTEE-
T ss_pred             CCCc----CCCceehhhhcCC---------CccCHHH-hCCC-EEEEEEECCcCcchhhhh-hHHHHHHHHHhCcCCEE-
Confidence            4677    799999984  33         7899999 5998 6778899999999998 5 79999999999988998 


Q ss_pred             EEEEec-------CCHHHHHHHHHHhCCCCceEEEeeCCc-----hHHHHcCCccccccccCCCCcceEEEEEe-CCEEE
Q 028808          114 VICVAV-------NDPYVMNGWAEKLQAKDVIEFYGDFDG-----SFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIK  180 (203)
Q Consensus       114 vi~IS~-------d~~~~~~~~~~~~~l~~~fpllsD~~~-----~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~  180 (203)
                      +++|+.       +++..+++|+++++++  ||++.|.++     ++++.||+..           .|++|||| +|+|+
T Consensus        65 ~v~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~~~v~~-----------~P~~~lid~~G~i~  131 (158)
T 3eyt_A           65 VLGLHTVFEHHEAMTPISLKAFLHEYRIK--FPVGVDQPGDGAMPRTMAAYQMRG-----------TPSLLLIDKAGDLR  131 (158)
T ss_dssp             EEEEECCCSCGGGSCHHHHHHHHHHTTCC--SCEEEECCCSSSSCHHHHHTTCCS-----------SSEEEEECTTSEEE
T ss_pred             EEEEEecccccccCCHHHHHHHHHHcCCC--ceEEEcCccchhhHHHHHHcCCCC-----------CCEEEEECCCCCEE
Confidence            999995       5788999999999997  999999988     7999999853           47899999 99999


Q ss_pred             EEEeec
Q 028808          181 ALNVEE  186 (203)
Q Consensus       181 ~~~~~~  186 (203)
                      +++.+.
T Consensus       132 ~~~~g~  137 (158)
T 3eyt_A          132 AHHFGD  137 (158)
T ss_dssp             EEEESC
T ss_pred             EEEeCC
Confidence            999864

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=99.91  E-value=1.6e-24  Score=168.15  Aligned_cols=128  Identities=10%  Similarity=0.156  Sum_probs=103.1

Q ss_pred             cccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcE
Q 028808           34 SVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDS  113 (203)
Q Consensus        34 ~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~  113 (203)
                      .+++|++    +|+|++++.+|         ++++|++ ++|| +||++||++|||+|..+ +|.|++++++|+++|++ 
T Consensus         4 ~~~~g~~----~p~f~l~~~~G---------~~~~l~~-~~gk-~vlv~f~a~~C~~C~~~-~~~l~~l~~~~~~~~~~-   66 (169)
T 2v1m_A            4 SHKSWNS----IYEFTVKDING---------VDVSLEK-YRGH-VCLIVNVACKCGATDKN-YRQLQEMHTRLVGKGLR-   66 (169)
T ss_dssp             ---CCCS----GGGCEEEBTTS---------CEEEGGG-GTTS-EEEEEEECSSSTTHHHH-HHHHHHHHHHHGGGTEE-
T ss_pred             cccCCcc----cccceeecCCC---------CCccHHH-cCCC-EEEEEEeeccCCchHHH-HHHHHHHHHHhhcCCeE-
Confidence            4678998    59999999986         8999999 5998 67778999999999999 99999999999999998 


Q ss_pred             EEEEecC--------CHHHHHHH-HHHhCCCCceEEEe--eCCchHHH-Hc--------CCccccccccCCCCcceEEEE
Q 028808          114 VICVAVN--------DPYVMNGW-AEKLQAKDVIEFYG--DFDGSFHK-SL--------DLGKDLSAALLGPRSERWSAY  173 (203)
Q Consensus       114 vi~IS~d--------~~~~~~~~-~~~~~l~~~fplls--D~~~~v~~-~y--------Gv~~~~~~~g~~~~~~r~tfI  173 (203)
                      |++||.|        +++.+++| .++++++  ||+++  |.++..++ .|        |+..      ...+..|++||
T Consensus        67 vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~------~~i~~~P~~~l  138 (169)
T 2v1m_A           67 ILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQ--FDMFSKIKVNGSDADDLYKFLKSRQHGTLT------NNIKWNFSKFL  138 (169)
T ss_dssp             EEEEECCCSTTCCCSCHHHHHHHHHHHHCCC--SEEBCCCCCSSTTSCHHHHHHHHHSCCSSS------CSCCSTTCEEE
T ss_pred             EEEEECCccCCCCCCCHHHHHHHHHHhcCCC--CceEEEEeecCccccHHHHHHHhhcCCccC------CcccccceEEE
Confidence            9999986        35788999 5999996  99997  77776543 23        4321      11223578999


Q ss_pred             Ee-CCEEEEEEeec
Q 028808          174 VE-DGRIKALNVEE  186 (203)
Q Consensus       174 Id-dG~I~~~~~~~  186 (203)
                      || +|+|++++.+.
T Consensus       139 id~~G~i~~~~~g~  152 (169)
T 2v1m_A          139 VDRQGQPVKRYSPT  152 (169)
T ss_dssp             ECTTSCEEEEECTT
T ss_pred             ECCCCCEEEEcCCC
Confidence            99 99999998764

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=99.91  E-value=9.4e-25  Score=173.28  Aligned_cols=136  Identities=9%  Similarity=0.075  Sum_probs=107.1

Q ss_pred             cccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCC
Q 028808           32 YASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGI  111 (203)
Q Consensus        32 ~~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv  111 (203)
                      ..++++|++    +|+|++++.+|         ++++|++ ++|| +||++||++|||+|..+ +|.|++++++|+++|+
T Consensus        18 ~~~~~~g~~----~p~f~l~~~~G---------~~~~l~~-~~gk-~vll~F~atwC~~C~~~-~~~l~~l~~~~~~~~v   81 (183)
T 2obi_A           18 RDDWRCARS----MHEFSAKDIDG---------HMVNLDK-YRGF-VCIVTNVASQCGKTEVN-YTQLVDLHARYAECGL   81 (183)
T ss_dssp             -CCGGGCCS----GGGCEEEBTTS---------CEEEGGG-GTTS-EEEEEEECSSSTTHHHH-HHHHHHHHHHHGGGTE
T ss_pred             ccCCcccCc----ccceEEEcCCC---------CEeeHHH-cCCC-EEEEEEeCCCCCCcHHH-HHHHHHHHHHHhcCCe
Confidence            456899999    59999999886         8999999 5998 57778999999999999 9999999999999999


Q ss_pred             cEEEEEecC--------CHHHHHHHHHHhCCCCceEEEe--eCCchHHH-HcCCccccc----cccCCCCcceEEEEEe-
Q 028808          112 DSVICVAVN--------DPYVMNGWAEKLQAKDVIEFYG--DFDGSFHK-SLDLGKDLS----AALLGPRSERWSAYVE-  175 (203)
Q Consensus       112 ~~vi~IS~d--------~~~~~~~~~~~~~l~~~fplls--D~~~~v~~-~yGv~~~~~----~~g~~~~~~r~tfIId-  175 (203)
                      + |++||.|        +++.+++|+++++++  ||+++  |.++..++ .|+......    ..+...+..|++|||| 
T Consensus        82 ~-vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~--~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~  158 (183)
T 2obi_A           82 R-ILAFPCNQFGKQEPGSNEEIKEFAAGYNVK--FDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDK  158 (183)
T ss_dssp             E-EEEEECCCSTTCCCSCHHHHHHHHHTTTCC--SEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECT
T ss_pred             E-EEEEECCCCCCCCCCCHHHHHHHHHHcCCC--ceEEeeeccCCcchhHHHHHhhccCCCCCcccccccccceEEEECC
Confidence            8 9999976        567899999999996  99998  77776543 342111000    0011123357899999 


Q ss_pred             CCEEEEEEeec
Q 028808          176 DGRIKALNVEE  186 (203)
Q Consensus       176 dG~I~~~~~~~  186 (203)
                      +|+|++++.+.
T Consensus       159 ~G~i~~~~~g~  169 (183)
T 2obi_A          159 NGCVVKRYGPM  169 (183)
T ss_dssp             TSCEEEEECTT
T ss_pred             CCCEEEEeCCC
Confidence            99999998753

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=99.91  E-value=3.1e-24  Score=170.29  Aligned_cols=119  Identities=10%  Similarity=0.119  Sum_probs=107.1

Q ss_pred             ccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCc
Q 028808           33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID  112 (203)
Q Consensus        33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~  112 (203)
                      ..+++|++    +|+|++++.+|         +.++|++ ++|| +||++||++|||+|..+ ++.|++++++|+++ +.
T Consensus         5 ~~~~~g~~----~p~f~l~~~~G---------~~~~l~~-~~gk-~vlv~F~a~~C~~C~~~-~~~l~~l~~~~~~~-~~   67 (188)
T 2cvb_A            5 PELPLESP----LIDAELPDPRG---------GRYRLSQ-FHEP-LLAVVFMCNHCPYVKGS-IGELVALAERYRGK-VA   67 (188)
T ss_dssp             CCCCTTCB----CCCCEEECTTS---------CEEEGGG-CCSS-EEEEEEECSSCHHHHTT-HHHHHHHHHHTTTT-EE
T ss_pred             CcCCCCCC----CCCceeecCCC---------CEEeHHH-hCCC-EEEEEEECCCCccHHHH-HHHHHHHHHHhhcC-eE
Confidence            46889999    69999999886         8999999 5998 56778999999999999 99999999999987 88


Q ss_pred             EEEEEec--------CCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEE
Q 028808          113 SVICVAV--------NDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKAL  182 (203)
Q Consensus       113 ~vi~IS~--------d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~  182 (203)
                       +++|+.        |+...+++|+++++++  ||++.|.+.++++.||+..           .|++|||| +|+|+++
T Consensus        68 -~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~v~~-----------~P~~~lid~~G~i~~~  132 (188)
T 2cvb_A           68 -FVGINANDYEKYPEDAPEKMAAFAEEHGIF--FPYLLDETQEVAKAYRALR-----------TPEVFLFDERRLLRYH  132 (188)
T ss_dssp             -EEEEECCCTTTCGGGSHHHHHHHHHHHTCC--SCEEECSSSHHHHHTTCCE-----------ESEEEEECTTCBEEEE
T ss_pred             -EEEEEcCccccccccCHHHHHHHHHHhCCC--ceEEECCcchHHHHcCCCC-----------CCeEEEECCCCcEEEE
Confidence             999998        5678899999999996  9999999999999999853           47799999 9999998

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.91  E-value=4.8e-24  Score=162.96  Aligned_cols=121  Identities=19%  Similarity=0.386  Sum_probs=106.8

Q ss_pred             cCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEE
Q 028808           36 AVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVI  115 (203)
Q Consensus        36 ~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi  115 (203)
                      ++|++    +|+|++.+.+|         +.++|+++ +|| ++|++||++|||+|..+ ++.|++++++++++++. ++
T Consensus         1 ~~G~~----~p~~~l~~~~g---------~~~~l~~~-~gk-~vlv~F~~~~C~~C~~~-~~~l~~~~~~~~~~~v~-vv   63 (151)
T 2f9s_A            1 SEGSD----APNFVLEDTNG---------KRIELSDL-KGK-GVFLNFWGTWCEPCKKE-FPYMANQYKHFKSQGVE-IV   63 (151)
T ss_dssp             -CCEE----CCCCEEECTTC---------CEEEGGGG-TTS-EEEEEEECTTCHHHHHH-HHHHHHHHHHHGGGTEE-EE
T ss_pred             CCCCc----CCcceeEcCCC---------CEEEHHHc-CCC-EEEEEEECCCCHHHHHH-HHHHHHHHHHhccCCeE-EE
Confidence            36888    69999999886         89999995 998 56677889999999999 99999999999988998 99


Q ss_pred             EEecCC-HHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808          116 CVAVND-PYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       116 ~IS~d~-~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~  186 (203)
                      +|+.|+ +...++|.++++++  ||++.|.+.++++.||+..           .|++|||| +|+|++.+.+.
T Consensus        64 ~v~~d~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~v~~-----------~P~~~lid~~G~i~~~~~G~  123 (151)
T 2f9s_A           64 AVNVGESKIAVHNFMKSYGVN--FPVVLDTDRQVLDAYDVSP-----------LPTTFLINPEGKVVKVVTGT  123 (151)
T ss_dssp             EEEESCCHHHHHHHHHHHTCC--SCEEEETTSHHHHHTTCCS-----------SCEEEEECTTSEEEEEEESC
T ss_pred             EEECCCCHHHHHHHHHHcCCC--ceEEECCchHHHHhcCCCC-----------CCeEEEECCCCcEEEEEeCC
Confidence            999964 67899999999996  9999999999999999853           47789999 99999998754

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.91  E-value=7e-25  Score=174.10  Aligned_cols=132  Identities=12%  Similarity=0.194  Sum_probs=98.4

Q ss_pred             cccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCC
Q 028808           32 YASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGI  111 (203)
Q Consensus        32 ~~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv  111 (203)
                      ...+++|++    +|+|++++.+|         ++++|++ ++|| +||++||++|||+|..| +|.|++++++|+++|+
T Consensus        20 ~~~~~~g~~----~p~f~l~~~~G---------~~~~l~~-~~Gk-~vlv~F~atwC~~C~~~-~p~l~~l~~~~~~~~v   83 (181)
T 2p31_A           20 FQSMQQEQD----FYDFKAVNIRG---------KLVSLEK-YRGS-VSLVVNVASECGFTDQH-YRALQQLQRDLGPHHF   83 (181)
T ss_dssp             -------CC----GGGCEEEBTTS---------CEEEGGG-GTTS-EEEEEEECSSSTTHHHH-HHHHHHHHHHHGGGTE
T ss_pred             cCcCCcCCc----cCceEeecCCC---------CEecHHH-cCCC-EEEEEEeccCCCCcHHH-HHHHHHHHHHhhcCCE
Confidence            356899999    59999999886         8999999 5998 67788999999999999 9999999999999999


Q ss_pred             cEEEEEecC--------CHHHHHHHHHH-hCCCCceEEEe--eCCchHHH-H--cCCccccccccCCCCcceEEEEEe-C
Q 028808          112 DSVICVAVN--------DPYVMNGWAEK-LQAKDVIEFYG--DFDGSFHK-S--LDLGKDLSAALLGPRSERWSAYVE-D  176 (203)
Q Consensus       112 ~~vi~IS~d--------~~~~~~~~~~~-~~l~~~fplls--D~~~~v~~-~--yGv~~~~~~~g~~~~~~r~tfIId-d  176 (203)
                      + |++||.|        +++.+++|+++ ++++  ||+++  |.++..+. .  |++....   +. ....+++|||| +
T Consensus        84 ~-vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~--~p~~~~~d~~g~~~~~~~~~~~~~~P---~~-~~~~~~~~lid~~  156 (181)
T 2p31_A           84 N-VLAFPCNQFGQQEPDSNKEIESFARRTYSVS--FPMFSKIAVTGTGAHPAFKYLAQTSG---KE-PTWNFWKYLVAPD  156 (181)
T ss_dssp             E-EEEEECCCSTTCCCSCHHHHHHHHHHHHCCC--SCBBCCCCCSSTTSCHHHHHHHHHHS---CC-CCSTTCEEEECTT
T ss_pred             E-EEEEECcCCCCCCCCCHHHHHHHHHhhcCCC--ceeEeecccCCccchhhhhhhhhcCC---Cc-cccceeEEEEcCC
Confidence            8 9999986        56789999999 9996  99996  45554432 2  3222110   00 00011799999 9


Q ss_pred             CEEEEEEeec
Q 028808          177 GRIKALNVEE  186 (203)
Q Consensus       177 G~I~~~~~~~  186 (203)
                      |+|++++.+.
T Consensus       157 G~i~~~~~g~  166 (181)
T 2p31_A          157 GKVVGAWDPT  166 (181)
T ss_dssp             SCEEEEECTT
T ss_pred             CCEEEEeCCC
Confidence            9999998753

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.91  E-value=1.6e-24  Score=166.70  Aligned_cols=121  Identities=17%  Similarity=0.224  Sum_probs=107.1

Q ss_pred             cCCCccccCCCceEEec-cccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCc-cchhhHHHhHHHHHHcCCcE
Q 028808           36 AVGSDIVSAAQDVSLQK-ARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSN-QHVPSYKNNIDKFKAKGIDS  113 (203)
Q Consensus        36 ~~G~~~~~~APdf~l~~-~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~-ehl~~l~~~~~~f~~~gv~~  113 (203)
                      ..|.+    +|+|++++ .+|         +.++|++ ++|| +||++||++|||+|.. . +|.|++++++|+++|+. 
T Consensus         4 ~~g~~----~p~~~~~~~~~g---------~~~~l~~-~~gk-~vlv~F~a~~C~~C~~e~-~~~l~~l~~~~~~~~v~-   66 (160)
T 3lor_A            4 LDNAP----LLELDVQEWVNH---------EGLSNED-LRGK-VVVVEVFQMLCPGCVNHG-VPQAQKIHRMIDESQVQ-   66 (160)
T ss_dssp             CTTCC----BCCCCEEEESSS---------CCCCHHH-HTTS-EEEEEEECTTCHHHHHTH-HHHHHHHHHHSCTTTEE-
T ss_pred             cCCCc----CCCcccccccCC---------CccCHHH-hCCC-EEEEEEEcCCCcchhhhh-hHHHHHHHHHhCcCCcE-
Confidence            35777    69999998 665         8899999 5998 6778899999999998 5 79999999999999998 


Q ss_pred             EEEEec-------CCHHHHHHHHHHhCCCCceEEEeeCCch------HHHHcCCccccccccCCCCcceEEEEEe-CCEE
Q 028808          114 VICVAV-------NDPYVMNGWAEKLQAKDVIEFYGDFDGS------FHKSLDLGKDLSAALLGPRSERWSAYVE-DGRI  179 (203)
Q Consensus       114 vi~IS~-------d~~~~~~~~~~~~~l~~~fpllsD~~~~------v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I  179 (203)
                      +++|+.       +++...++|+++++++  ||++.|.+..      ++++||+..           .|++|||| +|+|
T Consensus        67 ~v~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~~~~v~~-----------~P~~~lid~~G~i  133 (160)
T 3lor_A           67 VIGLHSVFEHHDVMTPEALKVFIDEFGIK--FPVAVDMPREGQRIPSTMKKYRLEG-----------TPSIILADRKGRI  133 (160)
T ss_dssp             EEEEECCCSCGGGSCHHHHHHHHHHTTCC--SCEEEECCCTTCSSCHHHHHTTCCS-----------SSEEEEECTTSBE
T ss_pred             EEEEeccccccccCCHHHHHHHHHHcCCC--CcEEECCccccchhhhHHHhcccCc-----------cceEEEECCCCcE
Confidence            999997       6788999999999997  9999999998      999999853           47899999 9999


Q ss_pred             EEEEeec
Q 028808          180 KALNVEE  186 (203)
Q Consensus       180 ~~~~~~~  186 (203)
                      ++++.+.
T Consensus       134 ~~~~~g~  140 (160)
T 3lor_A          134 RQVQFGQ  140 (160)
T ss_dssp             EEEEESC
T ss_pred             EEEecCc
Confidence            9998865

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=99.90  E-value=4.9e-24  Score=168.70  Aligned_cols=131  Identities=16%  Similarity=0.223  Sum_probs=110.6

Q ss_pred             cccccccccccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhH
Q 028808           24 RIPTSSRAYASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNI  103 (203)
Q Consensus        24 ~~~~~~~~~~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~  103 (203)
                      +.-..+...+.+.+|++    ||+|++++.+|  +     .+.+++++ ++|| +||++||++|||+|..+ +|.|++++
T Consensus        19 ~~~~~~~~~~~~~~G~~----~P~f~l~~~~g--~-----~~~~~l~~-~~gk-~vll~F~a~~C~~C~~~-~~~l~~l~   84 (176)
T 3kh7_A           19 SHMLDPSELPSALIGKP----FPAFDLPSVQD--P-----ARRLTEAD-LKGK-PALVNVWGTWCPSCRVE-HPELTRLA   84 (176)
T ss_dssp             CCCCCGGGSTTTTTTSB----CCCCEEEBSSC--T-----TSEEEGGG-GCSS-CEEEEEECTTCHHHHHH-HHHHHHHH
T ss_pred             cccCCcccccccccCCc----CCCcEecccCC--C-----CceecHHH-hCCC-EEEEEEECCcCHHHHHH-HHHHHHHH
Confidence            44455667788999999    69999999875  1     16899999 5998 46678899999999999 99999877


Q ss_pred             HHHHHcCCcEEEEEec-CCHHHHHHHHHHhCCCCceE-EEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEE
Q 028808          104 DKFKAKGIDSVICVAV-NDPYVMNGWAEKLQAKDVIE-FYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIK  180 (203)
Q Consensus       104 ~~f~~~gv~~vi~IS~-d~~~~~~~~~~~~~l~~~fp-llsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~  180 (203)
                      ++    |+. |++|+. |+++..++|.++++++  |+ +++|.+..++++||+..           .|++|||| +|+|+
T Consensus        85 ~~----~v~-vv~vs~~d~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~v~~-----------~P~~~lid~~G~i~  146 (176)
T 3kh7_A           85 EQ----GVV-IYGINYKDDNAAAIKWLNELHNP--YLLSISDADGTLGLDLGVYG-----------APETYLIDKQGIIR  146 (176)
T ss_dssp             HT----TCE-EEEEEESCCHHHHHHHHHHTTCC--CSEEEEETTCHHHHHHTCCS-----------SCEEEEECTTCBEE
T ss_pred             HC----CCE-EEEEeCCCCHHHHHHHHHHcCCC--CceEEECCcchHHHHcCCCC-----------CCeEEEECCCCeEE
Confidence            65    798 999995 5678899999999997  66 68999999999999853           47899999 99999


Q ss_pred             EEEeec
Q 028808          181 ALNVEE  186 (203)
Q Consensus       181 ~~~~~~  186 (203)
                      +.+.+.
T Consensus       147 ~~~~g~  152 (176)
T 3kh7_A          147 HKIVGV  152 (176)
T ss_dssp             EEEESC
T ss_pred             EEEcCC
Confidence            998765

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=99.90  E-value=2.6e-24  Score=166.27  Aligned_cols=126  Identities=16%  Similarity=0.276  Sum_probs=111.0

Q ss_pred             ccccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcC
Q 028808           31 AYASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKG  110 (203)
Q Consensus        31 ~~~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~g  110 (203)
                      ....+++|++    +|+|++.+.+|         +.+++++ ++|| ++|+.||++|||+|..+ ++.|++++++|++.+
T Consensus        11 ~~~~~~~G~~----~p~f~l~~~~g---------~~~~l~~-~~gk-~vll~F~~~~C~~C~~~-~~~l~~~~~~~~~~~   74 (158)
T 3hdc_A           11 DAPLVRTGAL----APNFKLPTLSG---------ENKSLAQ-YRGK-IVLVNFWASWCPYCRDE-MPSMDRLVKSFPKGD   74 (158)
T ss_dssp             CSCCCCTTSB----CCCCEEECTTS---------CEEESGG-GTTS-EEEEEEECTTCHHHHHH-HHHHHHHHHHSSTTS
T ss_pred             CCcccCCCCc----CCCceeEcCCC---------CEEehHH-hCCC-EEEEEEECCcCHHHHHH-HHHHHHHHHHcccCC
Confidence            3456889999    69999999886         8999999 4998 56677889999999999 999999999999888


Q ss_pred             CcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCC
Q 028808          111 IDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAP  188 (203)
Q Consensus       111 v~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~  188 (203)
                      +. +++|+.|+  ..++|.++++++  |++++|.+.++++.||+..           .|++|||| +|+|++++.+..+
T Consensus        75 ~~-~v~v~~d~--~~~~~~~~~~~~--~~~~~d~~~~~~~~~~v~~-----------~P~~~lid~~G~i~~~~~G~~~  137 (158)
T 3hdc_A           75 LV-VLAVNVEK--RFPEKYRRAPVS--FNFLSDATGQVQQRYGANR-----------LPDTFIVDRKGIIRQRVTGGIE  137 (158)
T ss_dssp             EE-EEEEECSS--SCCGGGGGCCCS--CEEEECTTSHHHHHTTCCS-----------SSEEEEECTTSBEEEEEESCCC
T ss_pred             eE-EEEEeCCH--HHHHHHHHcCCC--ceEEECchHHHHHHhCCCC-----------cceEEEEcCCCCEEEEEeCCCc
Confidence            98 99999988  467899999996  9999999999999999853           47799999 9999999988643

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=99.90  E-value=4.4e-24  Score=165.74  Aligned_cols=125  Identities=14%  Similarity=0.259  Sum_probs=99.6

Q ss_pred             cccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcE
Q 028808           34 SVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDS  113 (203)
Q Consensus        34 ~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~  113 (203)
                      .+++|++    +|+|++++.+|         ++++|++ ++|| +||++||++|||+|..+ +|.|++++++|+++|++ 
T Consensus         5 ~~~~g~~----~p~f~l~~~~g---------~~~~l~~-~~gk-~vll~f~a~~C~~C~~~-~~~l~~l~~~~~~~~~~-   67 (170)
T 2p5q_A            5 TSKNPES----VHDFTVKDAKE---------NDVDLSI-FKGK-VLLIVNVASKCGMTNSN-YAEMNQLYEKYKDQGLE-   67 (170)
T ss_dssp             -----CC----GGGCEEEBTTS---------CEEEGGG-GTTS-EEEEEEECSSSTTHHHH-HHHHHHHHHHHGGGTEE-
T ss_pred             cCCCCcc----ccceEEEcCCC---------CEecHHH-hCCC-EEEEEEEeccCCccHHH-HHHHHHHHHHhccCCEE-
Confidence            4678998    59999999986         8999999 5998 57778999999999999 99999999999999998 


Q ss_pred             EEEEecC--------CHHHHHHHHH-HhCCCCceEEE--eeCCchHHH-Hc--------CCccccccccCCCCcce---E
Q 028808          114 VICVAVN--------DPYVMNGWAE-KLQAKDVIEFY--GDFDGSFHK-SL--------DLGKDLSAALLGPRSER---W  170 (203)
Q Consensus       114 vi~IS~d--------~~~~~~~~~~-~~~l~~~fpll--sD~~~~v~~-~y--------Gv~~~~~~~g~~~~~~r---~  170 (203)
                      |++||.|        ++..+++|++ +++++  ||++  .|.++..++ .|        |+..         ...|   +
T Consensus        68 vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~---------~~~p~~~~  136 (170)
T 2p5q_A           68 ILAFPCNQFGEEEPGTNDQITDFVCTRFKSE--FPIFDKIDVNGENASPLYRFLKLGKWGIFG---------DDIQWNFA  136 (170)
T ss_dssp             EEEEECCTTTTCCCSCHHHHHHHHHHHTCCC--SCBBCCCBSSSTTBCHHHHHHHTHHHHTTC---------SCCCSTTC
T ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHhcCCC--ceeEeeeccCCCchHHHHHHHHhcCCCccC---------Cccccccc
Confidence            9999985        5678899999 78886  9999  688776542 22        3311         1234   7


Q ss_pred             EEEEe-CCEEEEEEeec
Q 028808          171 SAYVE-DGRIKALNVEE  186 (203)
Q Consensus       171 tfIId-dG~I~~~~~~~  186 (203)
                      +|||| +|+|++++.+.
T Consensus       137 ~~lid~~G~i~~~~~g~  153 (170)
T 2p5q_A          137 KFLVNKDGQVVDRYYPT  153 (170)
T ss_dssp             EEEECTTSCEEEEECTT
T ss_pred             EEEECCCCCEEEeeCCC
Confidence            99999 99999998764

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=99.90  E-value=1.5e-24  Score=173.46  Aligned_cols=139  Identities=14%  Similarity=0.143  Sum_probs=102.2

Q ss_pred             cccccccccccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhH
Q 028808           24 RIPTSSRAYASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNI  103 (203)
Q Consensus        24 ~~~~~~~~~~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~  103 (203)
                      +-++.++....++.|++    ||+|++++.+|         ++++|++ ++|| +||++||++|||+|..+ +|.|++++
T Consensus        11 ~~~~~~~~~s~~~~~~~----~p~f~l~~~~G---------~~~~l~~-~~Gk-~vll~F~atwC~~C~~~-~~~l~~l~   74 (190)
T 2vup_A           11 SSGLVPRGGSHMSAASS----IFDFEVLDADH---------KPYNLVQ-HKGS-PLLIYNVASKCGYTKGG-YETATTLY   74 (190)
T ss_dssp             -------------CCCS----GGGSCCBBTTS---------SBCCGGG-GTTS-CEEEEEECSSSTTHHHH-HHHHHHHH
T ss_pred             cccccccccccCCCCCc----ccCeEEEcCCC---------CEEEHHH-cCCC-EEEEEEecCCCCccHHH-HHHHHHHH
Confidence            34566777788999999    59999999886         8999999 5998 56778899999999999 99999999


Q ss_pred             HHHHHcCCcEEEEEecC--------CHHHHHHHH-HHhCCCCceEEEe--eCCchHHH---------HcCCccccccccC
Q 028808          104 DKFKAKGIDSVICVAVN--------DPYVMNGWA-EKLQAKDVIEFYG--DFDGSFHK---------SLDLGKDLSAALL  163 (203)
Q Consensus       104 ~~f~~~gv~~vi~IS~d--------~~~~~~~~~-~~~~l~~~fplls--D~~~~v~~---------~yGv~~~~~~~g~  163 (203)
                      ++|+++|++ ||+||.|        +++.+++|+ ++++++  ||++.  |.++.+++         .||+...+     
T Consensus        75 ~~~~~~~v~-vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~--~p~l~~~D~~~~~~~~~~~~l~~~~~~v~~~P-----  146 (190)
T 2vup_A           75 NKYKSQGFT-VLAFPCNQFGGQEPGNEEEIKEFVCTKFKAE--FPIMAKINVNGENAHPLYEYMKKTKPGILKTK-----  146 (190)
T ss_dssp             HHHGGGTCE-EEEEECCCSTTCCCSCHHHHHHHHHHHHCCC--SCBBCCCBSSSTTBCHHHHHHHHHSCCGGGCC-----
T ss_pred             HHHhcCCeE-EEEEEcCccCCCCCCCHHHHHHHHHHhcCCC--eEEEeecccCcccccHHHHHHHhhcCCcCCCc-----
Confidence            999999998 9999998        678899999 899996  99997  66666543         13443210     


Q ss_pred             CCCcceEEEEEe-CCEEEEEEeec
Q 028808          164 GPRSERWSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       164 ~~~~~r~tfIId-dG~I~~~~~~~  186 (203)
                      ..+..+++|||| +|+|++++.+.
T Consensus       147 ~i~~~~~~~lid~~G~i~~~~~g~  170 (190)
T 2vup_A          147 AIKWNFTSFLIDRDGVPVERFSPG  170 (190)
T ss_dssp             SCCSTTCEEEECTTSCEEEEECTT
T ss_pred             cccccceEEEECCCCcEEEEECCC
Confidence            011123799999 99999998753

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.90  E-value=7.6e-24  Score=160.11  Aligned_cols=122  Identities=15%  Similarity=0.179  Sum_probs=107.1

Q ss_pred             ccccCCCccccCCCceEEeccccccCCCCCCceeeecc--cccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHH-HHc
Q 028808           33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIK--DIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKF-KAK  109 (203)
Q Consensus        33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~--dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f-~~~  109 (203)
                      ..+++|++    +|+|++.+.+|         +.++|+  + ++|| ++|+.||++|||+|..+ +|.|.+++++| +++
T Consensus         3 ~~~~~g~~----~p~~~l~~~~g---------~~~~l~~~~-~~gk-~vll~F~~~~C~~C~~~-~~~l~~l~~~~~~~~   66 (148)
T 3fkf_A            3 AKVTVGKS----APYFSLPNEKG---------EKLSRSAER-FRNR-YLLLNFWASWCDPQPEA-NAELKRLNKEYKKNK   66 (148)
T ss_dssp             --CCTTSB----CCCCCEEBTTS---------CEECTTSTT-TTTS-EEEEEEECGGGCCCHHH-HHHHHHHHHHTTTCT
T ss_pred             ccccCCCc----CCCeEeeCCCC---------CEEeccccc-cCCc-EEEEEEECCCCHHHHHH-hHHHHHHHHHhcCCC
Confidence            46889999    69999999886         899999  9 4998 56778899999999999 99999999999 888


Q ss_pred             CCcEEEEEecCC-HHHHHHHHHHhCCCCceEEEeeC---CchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEe
Q 028808          110 GIDSVICVAVND-PYVMNGWAEKLQAKDVIEFYGDF---DGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNV  184 (203)
Q Consensus       110 gv~~vi~IS~d~-~~~~~~~~~~~~l~~~fpllsD~---~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~  184 (203)
                      |+. +++|+.|+ ....++|.++++++  |+++.|.   +..+++.||+..           .|++|||| +|+|++.+.
T Consensus        67 ~~~-~v~v~~d~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~v~~-----------~P~~~lid~~G~i~~~~~  132 (148)
T 3fkf_A           67 NFA-MLGISLDIDREAWETAIKKDTLS--WDQVCDFTGLSSETAKQYAILT-----------LPTNILLSPTGKILARDI  132 (148)
T ss_dssp             TEE-EEEEECCSCHHHHHHHHHHTTCC--SEEECCSCGGGCHHHHHTTCCS-----------SSEEEEECTTSBEEEESC
T ss_pred             CeE-EEEEECCCCHHHHHHHHHHcCCC--ceEEEccCCcchHHHHhcCCCC-----------cCEEEEECCCCeEEEecC
Confidence            898 99999985 46889999999996  9999999   779999999853           47899999 999999875

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.90  E-value=1.8e-23  Score=159.46  Aligned_cols=137  Identities=18%  Similarity=0.273  Sum_probs=114.8

Q ss_pred             ccccCCCccccCCC-ceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCC
Q 028808           33 ASVAVGSDIVSAAQ-DVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGI  111 (203)
Q Consensus        33 ~~~~~G~~~~~~AP-df~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv  111 (203)
                      |.+++|++    || +|++.+.+|         +.++|++ ++|| ++|+.||++|||+|..+ ++.|++++++++++++
T Consensus         1 m~l~~G~~----~p~~f~l~~~~g---------~~~~l~~-~~gk-~~lv~f~~~~C~~C~~~-~~~l~~l~~~~~~~~~   64 (152)
T 2lja_A            1 MSLRSGNP----SAASFSYPDING---------KTVSLAD-LKGK-YIYIDVWATWCGPCRGE-LPALKELEEKYAGKDI   64 (152)
T ss_dssp             CCTTTTCC----CSSSCEEEETTT---------EEEESTT-TTTS-EEEEEECCSSCCGGGGT-HHHHHHHHHHSTTSSE
T ss_pred             CccccCCC----CCcccEeecCCC---------CEeeHHH-cCCC-EEEEEEECCcCHhHHHH-hHHHHHHHHHhccCCe
Confidence            46889999    59 999999886         8999999 5998 56678899999999999 9999999999998889


Q ss_pred             cEEEEEecCCH-HHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCC
Q 028808          112 DSVICVAVNDP-YVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPS  189 (203)
Q Consensus       112 ~~vi~IS~d~~-~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~  189 (203)
                      . +++|+.|+. ...++|.++++++ .++++.|.+.++++.||+..           .|++|||| +|+|++...+.   
T Consensus        65 ~-~v~v~~d~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~v~~-----------~P~~~lid~~G~i~~~~~g~---  128 (152)
T 2lja_A           65 H-FVSLSCDKNKKAWENMVTKDQLK-GIQLHMGTDRTFMDAYLING-----------IPRFILLDRDGKIISANMTR---  128 (152)
T ss_dssp             E-EEEEECCSCHHHHHHHHHHHTCC-SEEEECSSCTHHHHHTTCCS-----------SCCEEEECTTSCEEESSCCC---
T ss_pred             E-EEEEEccCcHHHHHHHHHhcCCC-CceeecCcchhHHHHcCcCC-----------CCEEEEECCCCeEEEccCCC---
Confidence            8 999999864 6789999999997 57999999999999999853           46789999 99999986542   


Q ss_pred             CcccCCHHHHHhc
Q 028808          190 KMKVSGGDVILGQ  202 (203)
Q Consensus       190 ~~~~~~a~~vL~~  202 (203)
                       .+.++.+++|+.
T Consensus       129 -~~~~~l~~~l~~  140 (152)
T 2lja_A          129 -PSDPKTAEKFNE  140 (152)
T ss_dssp             -TTCHHHHHHHHH
T ss_pred             -CCHHHHHHHHHH
Confidence             234455555543

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.90  E-value=8.2e-24  Score=163.30  Aligned_cols=121  Identities=13%  Similarity=0.210  Sum_probs=102.3

Q ss_pred             cccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcE
Q 028808           34 SVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDS  113 (203)
Q Consensus        34 ~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~  113 (203)
                      ....|++    +|+|++++.+|         +.++|++ ++|| +||++||++|||+|..+ +|.|++++++|+++|++ 
T Consensus         8 ~~~~g~~----~p~f~l~~~~G---------~~~~l~~-~~gk-~vll~F~a~wC~~C~~~-~~~l~~l~~~~~~~~~~-   70 (152)
T 2lrt_A            8 DKIKEAS----IIDIQLKDLKG---------NTRSLTD-LKGK-VVLIDFTVYNNAMSAAH-NLALRELYNKYASQGFE-   70 (152)
T ss_dssp             SSSCTTC----SCCCCEEBTTS---------CEECTTT-GGGS-EEEEEEECTTCHHHHHH-HHHHHHHHHHHGGGTEE-
T ss_pred             hhccCCC----CCCeEEEcCCC---------CEEeHHH-hCCC-EEEEEEEcCCChhhHHH-HHHHHHHHHHhccCCeE-
Confidence            4567888    69999999886         8999999 5998 57778899999999999 99999999999999998 


Q ss_pred             EEEEecCCHH-HHHHHHHHhCCCCceEEEeeCCch---HHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808          114 VICVAVNDPY-VMNGWAEKLQAKDVIEFYGDFDGS---FHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       114 vi~IS~d~~~-~~~~~~~~~~l~~~fpllsD~~~~---v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~  186 (203)
                      |++||.|+.. ..++|.+  +++  ||++.|.++.   +++.||+..           .|++|||| +|+|++++.+.
T Consensus        71 vv~i~~d~~~~~~~~~~~--~~~--~~~~~d~~~~~~~~~~~~~v~~-----------~P~~~lid~~G~i~~~~~g~  133 (152)
T 2lrt_A           71 IYQISLDGDEHFWKTSAD--NLP--WVCVRDANGAYSSYISLYNVTN-----------LPSVFLVNRNNELSARGENI  133 (152)
T ss_dssp             EEEEECSCCHHHHHHHHT--TCS--SEEEECSSGGGCHHHHHHTCCS-----------CSEEEEEETTTEEEEETTTC
T ss_pred             EEEEEccCCHHHHHHHHh--CCC--ceEEECCCCcchHHHHHcCccc-----------CceEEEECCCCeEEEecCCH
Confidence            9999998753 3455543  365  9999999987   999999853           47899999 99999987653

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=99.90  E-value=6.4e-24  Score=174.88  Aligned_cols=126  Identities=17%  Similarity=0.145  Sum_probs=95.7

Q ss_pred             CCceEEeccc-cccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC---
Q 028808           45 AQDVSLQKAR-TWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN---  120 (203)
Q Consensus        45 APdf~l~~~~-g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d---  120 (203)
                      +|+|++++.+ |         +.++|++ ++|| +||++||++|||+|. | +|.|++++++|+++|++ ||+||+|   
T Consensus        35 ~pdF~l~d~~~G---------~~v~Lsd-~~GK-vvll~FwAt~C~~c~-e-~p~L~~l~~~~~~~g~~-Vlgvs~d~f~  100 (215)
T 2i3y_A           35 IYDYEAIALNKN---------EYVSFKQ-YVGK-HILFVNVATYCGLTA-Q-YPELNALQEELKPYGLV-VLGFPCNQFG  100 (215)
T ss_dssp             GGGCEEEBSSSS---------CEEEGGG-GTTS-EEEEEEECSSSGGGG-G-HHHHHHHHHHHGGGTEE-EEEEECCCST
T ss_pred             cCCcEeeeCCCC---------CEEcHHH-hCCC-EEEEEEeCCCCCChH-h-HHHHHHHHHHhccCCeE-EEEEEccccC
Confidence            6999999997 6         8999999 5998 678889999999998 9 99999999999999998 9999965   


Q ss_pred             -----CHHHHHHHHH------HhCCCCceEEEeeCC--chHH-HHcCCccccc-----ccc------------CCCCcce
Q 028808          121 -----DPYVMNGWAE------KLQAKDVIEFYGDFD--GSFH-KSLDLGKDLS-----AAL------------LGPRSER  169 (203)
Q Consensus       121 -----~~~~~~~~~~------~~~l~~~fpllsD~~--~~v~-~~yGv~~~~~-----~~g------------~~~~~~r  169 (203)
                           +++.+++|++      +++++  ||+++|.+  +..+ ..|+......     ..|            ......|
T Consensus       101 ~~e~~~~~~i~~f~~~~~~~~~~~~~--fpll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~np  178 (215)
T 2i3y_A          101 KQEPGDNKEILPGLKYVRPGGGFVPS--FQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNF  178 (215)
T ss_dssp             TCCCSCHHHHHHHHHHTSSCTTCCCS--SEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTT
T ss_pred             cCCCCCHHHHHHHHHhccchhccCcc--ceeEeeeccCCcccchHHHHHHhhCcccccccccccccccccccccccccCc
Confidence                 4577899999      88886  99998753  3321 1222111000     000            0111237


Q ss_pred             EEEEEe-CCEEEEEEeec
Q 028808          170 WSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       170 ~tfIId-dG~I~~~~~~~  186 (203)
                      ++|||| +|+|++++.+.
T Consensus       179 ttfLID~~G~vv~~~~g~  196 (215)
T 2i3y_A          179 EKFLVGPDGIPVMRWSHR  196 (215)
T ss_dssp             CEEEECTTSCEEEEECTT
T ss_pred             eEEEECCCCeEEEEeCCC
Confidence            899999 99999998753

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=99.90  E-value=1.8e-23  Score=161.37  Aligned_cols=127  Identities=8%  Similarity=0.088  Sum_probs=102.8

Q ss_pred             CCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCC-CCccchhhHHHhHHHHHH----cCCcEEEEEec
Q 028808           45 AQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGV-CSNQHVPSYKNNIDKFKA----KGIDSVICVAV  119 (203)
Q Consensus        45 APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~-C~~ehl~~l~~~~~~f~~----~gv~~vi~IS~  119 (203)
                      ||+|++++.+|         ++++|++ ++|| ++|++||++|||+ |..+ ++.|++++++|++    .+++ |++||.
T Consensus         3 ap~f~l~~~~G---------~~~~l~~-~~gk-~vll~f~~~~C~~~C~~~-~~~l~~l~~~~~~~~~~~~~~-vv~vs~   69 (164)
T 2ggt_A            3 GGPFSLTTHTG---------ERKTDKD-YLGQ-WLLIYFGFTHCPDVCPEE-LEKMIQVVDEIDSITTLPDLT-PLFISI   69 (164)
T ss_dssp             CCCCEEEETTS---------CEEEGGG-GTTC-EEEEEEECTTCSSHHHHH-HHHHHHHHHHHHHSSSSCCEE-EEEEES
T ss_pred             CCCeEEEeCCC---------CEEeHHH-cCCC-EEEEEEEeCCCCchhHHH-HHHHHHHHHHHhhccCCCcEE-EEEEEe
Confidence            89999999886         8999999 5998 5677899999998 9999 9999999999987    4888 999998


Q ss_pred             CC----HHHHHHHHHHhCCCCceEEEe---eCCchHHHHcCCccccccc-cCCC---CcceEEEEEe-CCEEEEEEeec
Q 028808          120 ND----PYVMNGWAEKLQAKDVIEFYG---DFDGSFHKSLDLGKDLSAA-LLGP---RSERWSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       120 d~----~~~~~~~~~~~~l~~~fplls---D~~~~v~~~yGv~~~~~~~-g~~~---~~~r~tfIId-dG~I~~~~~~~  186 (203)
                      |+    ++.+++|+++++++  |+++.   |...+++++||+....... ..+.   ...+++|||| +|+|++++.+.
T Consensus        70 d~~~d~~~~~~~~~~~~~~~--~~~l~~~~d~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~  146 (164)
T 2ggt_A           70 DPERDTKEAIANYVKEFSPK--LVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQN  146 (164)
T ss_dssp             CTTTCCHHHHHHHHHTTCSS--CEEEECCHHHHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETT
T ss_pred             CCCCCCHHHHHHHHHHcCCC--eEEEeCCHHHHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCC
Confidence            75    67899999999986  99994   6667899999997532100 0000   0123799999 99999998653

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=99.89  E-value=1.4e-23  Score=165.50  Aligned_cols=133  Identities=14%  Similarity=0.069  Sum_probs=104.8

Q ss_pred             cCCCccccCCC-ceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCC-CCCccchhhHHHhHHHHHH--cCC
Q 028808           36 AVGSDIVSAAQ-DVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTG-VCSNQHVPSYKNNIDKFKA--KGI  111 (203)
Q Consensus        36 ~~G~~~~~~AP-df~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp-~C~~ehl~~l~~~~~~f~~--~gv  111 (203)
                      .+|++    +| +|++++.+|         ++++|++ ++|| ++|++||++||| +|..| ++.|++++++|++  .++
T Consensus         2 ~~G~~----~P~~f~l~d~~G---------~~v~l~~-~~Gk-~vll~F~~t~C~~~C~~~-~~~l~~~~~~~~~~~~~~   65 (170)
T 3me7_A            2 SLGTY----VPGDITLVDSYG---------NEFQLKN-LKGK-PIILSPIYTHCRAACPLI-TKSLLKVIPKLGTPGKDF   65 (170)
T ss_dssp             CTTCB----CCTTCEEEETTC---------CEEEGGG-GTTS-CEEEEEECTTCCSHHHHH-HHHHHTTHHHHCCBTTTB
T ss_pred             CCCCc----CCCCeEEEcCCc---------CEEchHH-hCCC-EEEEEEECCCCCchhHHH-HHHHHHHHHHhhhcCCce
Confidence            57888    69 999999886         8999999 5998 567789999998 59999 9999999999975  458


Q ss_pred             cEEEEEecC---CHHHHHHHHHHhCCCC-ceEEEe--e--CCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEE
Q 028808          112 DSVICVAVN---DPYVMNGWAEKLQAKD-VIEFYG--D--FDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKAL  182 (203)
Q Consensus       112 ~~vi~IS~d---~~~~~~~~~~~~~l~~-~fplls--D--~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~  182 (203)
                      + ||+||.|   +++.+++|+++++++. +++++.  |  ...+++++||+.......+  ....|++|||| +|+|+++
T Consensus        66 ~-vv~is~d~~d~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~lID~~G~i~~~  142 (170)
T 3me7_A           66 W-VITFTFDPKDTLEDIKRFQKEYGIDGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGND--FIHPNVVVVLSPELQIKDY  142 (170)
T ss_dssp             E-EEEEECCTTCCHHHHHHHHHHTTCCSSSEEEEEESSHHHHHHHHHHTTCCCEEETTE--EECCCEEEEECTTSBEEEE
T ss_pred             E-EEEEECCCCCCHHHHHHHHHHcCCCCCCeEEEeCCCHHHHHHHHHHCCeEEecCCCc--cccCceEEEECCCCeEEEE
Confidence            7 9999986   6788999999999751 344442  3  3578999999865321111  12347799999 9999999


Q ss_pred             EeecC
Q 028808          183 NVEEA  187 (203)
Q Consensus       183 ~~~~~  187 (203)
                      +.+..
T Consensus       143 ~~g~~  147 (170)
T 3me7_A          143 IYGVN  147 (170)
T ss_dssp             EESSS
T ss_pred             EeCCC
Confidence            87654

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.89  E-value=3.3e-23  Score=158.18  Aligned_cols=122  Identities=18%  Similarity=0.213  Sum_probs=106.8

Q ss_pred             ccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEE
Q 028808           35 VAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSV  114 (203)
Q Consensus        35 ~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~v  114 (203)
                      ..+|++    +|+|++.+.+|         +.++++++ +|| ++|++||++|||+|..+ ++.|++++++++++|+. +
T Consensus         2 ~~~G~~----~p~~~l~~~~g---------~~~~l~~~-~gk-~~lv~f~~~~C~~C~~~-~~~l~~l~~~~~~~~~~-v   64 (153)
T 2l5o_A            2 SLDSKT----APAFSLPDLHG---------KTVSNADL-QGK-VTLINFWFPSCPGCVSE-MPKIIKTANDYKNKNFQ-V   64 (153)
T ss_dssp             --CCTT----CCSCEEECTTS---------CEEEHHHH-TTC-EEEEEEECTTCTTHHHH-HHHHHHHHHHGGGTTEE-E
T ss_pred             CCCCCC----CCCcEeecCCC---------CCccHHHh-CCC-EEEEEEECCCCccHHHH-HHHHHHHHHHhccCCeE-E
Confidence            357888    69999999886         89999994 998 56678899999999999 99999999999998998 9


Q ss_pred             EEEe--cCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808          115 ICVA--VNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       115 i~IS--~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~  186 (203)
                      ++|+  .|+.+..++|+++++++  |+++.|.+..+++.||+..           .|++|||| +|+|++.+.+.
T Consensus        65 v~v~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~i~~-----------~P~~~lid~~G~i~~~~~g~  126 (153)
T 2l5o_A           65 LAVAQPIDPIESVRQYVKDYGLP--FTVMYDADKAVGQAFGTQV-----------YPTSVLIGKKGEILKTYVGE  126 (153)
T ss_dssp             EEEECTTSCHHHHHHHHHHTTCC--SEEEECSSCHHHHHHTCCS-----------SSEEEEECSSSCCCEEEESS
T ss_pred             EEEecCCCCHHHHHHHHHHcCCC--ceEEcCchHHHHHHcCCCc-----------cCeEEEECCCCcEEEEEcCC
Confidence            9999  46778899999999997  9999999999999999853           47789999 99999988763

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=99.89  E-value=1.4e-24  Score=173.38  Aligned_cols=138  Identities=13%  Similarity=0.178  Sum_probs=100.9

Q ss_pred             cccccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHc
Q 028808           30 RAYASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAK  109 (203)
Q Consensus        30 ~~~~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~  109 (203)
                      +....+..+++    ||+|+++|.+|         ++++|++ ++|| +||++||++|||+|..| +|.|++++++|+++
T Consensus        15 ~~~~~~~~~~~----~p~f~l~d~~G---------~~~~l~~-~~Gk-~vlv~F~atwC~~C~~~-~p~l~~l~~~~~~~   78 (187)
T 3dwv_A           15 SSRKKMSAASS----IFDFEVLDADH---------KPYNLVQ-HKGS-PLLIYNVASKCGYTKGG-YETATTLYNKYKSQ   78 (187)
T ss_dssp             -----CTTCCS----GGGSCCBBTTS---------CBCCGGG-GTTS-CEEEEEECCBCSCCTTH-HHHHHHHHHHHGGG
T ss_pred             hhhhhhcCCCc----cCCeEEEcCCC---------CEeeHHH-hCCC-EEEEEEecCCCCCcHHH-HHHHHHHHHHhhhC
Confidence            34455777888    59999999986         8999999 5998 57788999999999999 99999999999999


Q ss_pred             CCcEEEEEecC--------CHHHHHHHHHH-hCCCCceEEEe--eCCchHHH-HcCCccccccccCCCCcce---EEEEE
Q 028808          110 GIDSVICVAVN--------DPYVMNGWAEK-LQAKDVIEFYG--DFDGSFHK-SLDLGKDLSAALLGPRSER---WSAYV  174 (203)
Q Consensus       110 gv~~vi~IS~d--------~~~~~~~~~~~-~~l~~~fplls--D~~~~v~~-~yGv~~~~~~~g~~~~~~r---~tfII  174 (203)
                      |++ ||+||.|        +++.+++|+++ ++++  ||+++  |.++..+. .|+..........+....|   ++|||
T Consensus        79 ~~~-vi~is~d~~~~~e~~~~~~~~~~~~~~~~~~--~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~li  155 (187)
T 3dwv_A           79 GFT-VLAFPSNQFGGQEPGNEEEIKEFVCTKFKAE--FPIMAKINVNGENAHPLYEYMKKTKPGILATKAIKWNFTSFLI  155 (187)
T ss_dssp             TCE-EEEEEBCCCSSCSSSBTTHHHHSCCBCCCCS--SCBBCCBCCSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEE
T ss_pred             CeE-EEEEECcccCCCCCCCHHHHHHHHHhccCCC--CceeeccccCCcchhHHHHHHHhhcCCccCCCccccceeEEEE
Confidence            998 9999986        35778888885 4886  99997  66655442 2211000000001112346   89999


Q ss_pred             e-CCEEEEEEeec
Q 028808          175 E-DGRIKALNVEE  186 (203)
Q Consensus       175 d-dG~I~~~~~~~  186 (203)
                      | +|+|++.+.+.
T Consensus       156 D~~G~i~~~~~g~  168 (187)
T 3dwv_A          156 DRDGVPVERFSPG  168 (187)
T ss_dssp             CTTSCEEEEECTT
T ss_pred             CCCCCEEEEECCC
Confidence            9 99999998754

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.89  E-value=3.1e-23  Score=155.93  Aligned_cols=124  Identities=13%  Similarity=0.208  Sum_probs=105.3

Q ss_pred             cccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCC
Q 028808           32 YASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGI  111 (203)
Q Consensus        32 ~~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv  111 (203)
                      ...+.+|++    +|+|++++.+|         +.+++++  +|| ++|+.||++|||+|..+ ++.|.++++++++.++
T Consensus         6 ~~~~~~g~~----~p~~~l~~~~g---------~~~~l~~--~gk-~~ll~f~~~~C~~C~~~-~~~l~~~~~~~~~~~~   68 (145)
T 3erw_A            6 QAEEKQPAV----PAVFLMKTIEG---------EDISIPN--KGQ-KTILHFWTSWCPPCKKE-LPQFQSFYDAHPSDSV   68 (145)
T ss_dssp             ------CCS----CCEEEEECTTS---------CEEEESC--TTS-EEEEEEECSSCHHHHHH-HHHHHHHHHHCCCSSE
T ss_pred             cccccCCCc----CCCceeecCCC---------CEEeHHH--CCC-EEEEEEECCCCHHHHHH-HHHHHHHHHHcCCCCE
Confidence            346788999    69999999886         8899998  888 56667889999999999 9999999999987789


Q ss_pred             cEEEEEecC----CHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808          112 DSVICVAVN----DPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       112 ~~vi~IS~d----~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~  186 (203)
                      . +++|+.|    ++...++|.++++++  ||++.|.+..+++.||+..           .|++|||| +|+|++.+.+.
T Consensus        69 ~-~v~v~~d~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~v~~-----------~P~~~lid~~G~i~~~~~g~  134 (145)
T 3erw_A           69 K-LVTVNLVNSEQNQQVVEDFIKANKLT--FPIVLDSKGELMKEYHIIT-----------IPTSFLLNEKGEIEKTKIGP  134 (145)
T ss_dssp             E-EEEEECGGGSSCHHHHHHHHHHTTCC--SCEEECSSSHHHHHTTCCE-----------ESEEEEECTTCCEEEEEESC
T ss_pred             E-EEEEEccCCcCCHHHHHHHHHHcCCc--eeEEEcCchhHHHhcCcCc-----------cCeEEEEcCCCcEEEEEcCC
Confidence            8 9999986    678899999999996  9999999999999999853           57899999 99999988763

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=99.89  E-value=2.5e-23  Score=168.13  Aligned_cols=138  Identities=10%  Similarity=0.066  Sum_probs=103.2

Q ss_pred             cccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCC-CCccchhhHHHhHHHHHHc-
Q 028808           32 YASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGV-CSNQHVPSYKNNIDKFKAK-  109 (203)
Q Consensus        32 ~~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~-C~~ehl~~l~~~~~~f~~~-  109 (203)
                      .....+|++.  .+|+|++++.+|         ++++|++ ++|| +||++||++|||+ |..+ +|.|++++++|+++ 
T Consensus        10 ~~~~~~g~~~--~~p~f~l~d~~G---------~~v~l~~-~~Gk-~vlv~F~at~C~~vC~~~-~~~l~~l~~~~~~~~   75 (200)
T 2b7k_A           10 EANRGYGKPS--LGGPFHLEDMYG---------NEFTEKN-LLGK-FSIIYFGFSNCPDICPDE-LDKLGLWLNTLSSKY   75 (200)
T ss_dssp             ------CCCC--CCCCCEEEETTS---------CEEEGGG-GTTS-CEEEEEECTTCCSHHHHH-HHHHHHHHHHHHHHH
T ss_pred             hhHhccCCCC--cCCCEEEEcCCC---------CEEeHHH-cCCC-EEEEEEECCCCcchhHHH-HHHHHHHHHHHHHhh
Confidence            4457788872  149999999876         8999999 5998 5677899999997 9999 99999999999864 


Q ss_pred             --CCcEEEEEecC----CHHHHHHHHHHhCCCCceEEEee---CCchHHHHcCCcccccc---cc--CCCCcceEEEEEe
Q 028808          110 --GIDSVICVAVN----DPYVMNGWAEKLQAKDVIEFYGD---FDGSFHKSLDLGKDLSA---AL--LGPRSERWSAYVE  175 (203)
Q Consensus       110 --gv~~vi~IS~d----~~~~~~~~~~~~~l~~~fpllsD---~~~~v~~~yGv~~~~~~---~g--~~~~~~r~tfIId  175 (203)
                        +++ |++||.|    +++.+++|+++++.+  |+++.+   ...+++++||+....+.   .|  ......|++||||
T Consensus        76 ~~~v~-vv~Is~D~~~d~~~~~~~~~~~~~~~--~~~l~~~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD  152 (200)
T 2b7k_A           76 GITLQ-PLFITCDPARDSPAVLKEYLSDFHPS--ILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMD  152 (200)
T ss_dssp             CCCCE-EEEEESCTTTCCHHHHHHHHTTSCTT--CEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEEC
T ss_pred             CCceE-EEEEECCCCCCCHHHHHHHHHHcCCC--ceEEeCCHHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEEC
Confidence              898 9999998    578899999999986  888874   35789999999732110   01  0011235789999


Q ss_pred             -CCEEEEEEeec
Q 028808          176 -DGRIKALNVEE  186 (203)
Q Consensus       176 -dG~I~~~~~~~  186 (203)
                       +|+|++.+.+.
T Consensus       153 ~~G~i~~~~~g~  164 (200)
T 2b7k_A          153 PEGQFVDALGRN  164 (200)
T ss_dssp             TTSCEEEEECTT
T ss_pred             CCCcEEEEeCCC
Confidence             99999998654

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=99.82  E-value=3.8e-25  Score=170.73  Aligned_cols=125  Identities=18%  Similarity=0.293  Sum_probs=108.7

Q ss_pred             cccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHH-hHHHHH-HcCC
Q 028808           34 SVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKN-NIDKFK-AKGI  111 (203)
Q Consensus        34 ~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~-~~~~f~-~~gv  111 (203)
                      .+++|++    +|+|++++.+|         +.++|++ ++|| ++|++||++|||+|..+ +|.|++ ++++++ +.++
T Consensus         6 ~l~~g~~----~p~f~l~~~~g---------~~~~l~~-~~gk-~vll~f~a~~C~~C~~~-~~~l~~~l~~~~~~~~~~   69 (159)
T 2ls5_A            6 IVRIGEM----APDFTITLTDG---------KQVTLSS-LRGK-VVMLQFTASWCGVCRKE-MPFIEKDIWLKHKDNADF   69 (159)
Confidence            4778999    69999999886         8999999 4998 56778999999999999 999998 999998 7889


Q ss_pred             cEEEEEecCCH-HHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808          112 DSVICVAVNDP-YVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       112 ~~vi~IS~d~~-~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~  186 (203)
                      . +++|+.|+. +..++|.++++++  ||+++|.+.++++.||+...         ..|++|||| +|+|++.+.+.
T Consensus        70 ~-vv~v~~d~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~~---------~~P~~~lid~~G~i~~~~~g~  134 (159)
T 2ls5_A           70 A-LIGIDRDEPLEKVLAFAKSTGVT--YPLGLDPGADIFAKYALRDA---------GITRNVLIDREGKIVKLTRLY  134 (159)
Confidence            8 999999875 5688999999996  99999999999999997431         247789999 99999998764

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=99.89  E-value=5.7e-24  Score=168.52  Aligned_cols=128  Identities=15%  Similarity=0.170  Sum_probs=99.6

Q ss_pred             ccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEE
Q 028808           35 VAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSV  114 (203)
Q Consensus        35 ~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~v  114 (203)
                      -.+|++    +|+|++++.+|         +.++|++ ++|| +||++||++|||+|..| +|.|++++++|+++|+. |
T Consensus        12 ~~~~~~----~p~f~l~d~~G---------~~v~l~~-~~Gk-~vlv~F~atwC~~C~~~-~p~l~~l~~~~~~~~~~-v   74 (180)
T 3kij_A           12 KPKINS----FYAFEVKDAKG---------RTVSLEK-YKGK-VSLVVNVASDCQLTDRN-YLGLKELHKEFGPSHFS-V   74 (180)
T ss_dssp             CCCCCC----GGGCEEEBTTS---------CEEEGGG-GTTS-EEEEEEECSSSTTHHHH-HHHHHHHHHHHTTTSEE-E
T ss_pred             cCCcCc----ccceEEecCCC---------CEecHHH-cCCC-EEEEEEEecCCCCcHHH-HHHHHHHHHHhccCCeE-E
Confidence            456778    49999999986         8999999 5998 78889999999999999 99999999999999998 9


Q ss_pred             EEEecC--------CHHHHHHHHHH-hCCCCceEEEeeC--CchHHH-HcCCccccccccCCCCcceE----EEEEe-CC
Q 028808          115 ICVAVN--------DPYVMNGWAEK-LQAKDVIEFYGDF--DGSFHK-SLDLGKDLSAALLGPRSERW----SAYVE-DG  177 (203)
Q Consensus       115 i~IS~d--------~~~~~~~~~~~-~~l~~~fpllsD~--~~~v~~-~yGv~~~~~~~g~~~~~~r~----tfIId-dG  177 (203)
                      |+||.|        +++.+++|+++ ++++  ||+++|.  .+..+. .|+.....  .+    ..|.    +|||| +|
T Consensus        75 i~is~d~~~~~~~d~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~--~~----~~p~~~~~~~lid~~G  146 (180)
T 3kij_A           75 LAFPCNQFGESEPRPSKEVESFARKNYGVT--FPIFHKIKILGSEGEPAFRFLVDS--SK----KEPRWNFWKYLVNPEG  146 (180)
T ss_dssp             EEEECCCSTTCCCSCHHHHHHHHHHHHCCC--SCBBCCCCCSSTTCCHHHHHHHHH--HT----CCCSSTTCEEEECTTS
T ss_pred             EEEECCccccCCCCCHHHHHHHHHHhcCCC--CceeeeeeccCccccHHHHHHHhc--CC----CCccccceEEEECCCC
Confidence            999965        67889999999 9996  9998743  222111 12111100  01    1234    89999 99


Q ss_pred             EEEEEEeecC
Q 028808          178 RIKALNVEEA  187 (203)
Q Consensus       178 ~I~~~~~~~~  187 (203)
                      +|++.+.+..
T Consensus       147 ~i~~~~~g~~  156 (180)
T 3kij_A          147 QVVKFWRPEE  156 (180)
T ss_dssp             CEEEEECTTC
T ss_pred             CEEEEECCCC
Confidence            9999987653

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.89  E-value=3.5e-23  Score=159.63  Aligned_cols=129  Identities=14%  Similarity=0.155  Sum_probs=109.4

Q ss_pred             ccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCc
Q 028808           33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID  112 (203)
Q Consensus        33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~  112 (203)
                      ..+++|++    +|+|++.+.+|         +.+++++ ++|| ++|++||++|||+|..+ ++.|++++++|+++|+.
T Consensus         6 ~~~~~g~~----~p~~~l~~~~g---------~~~~l~~-~~gk-~vlv~f~~~~C~~C~~~-~~~l~~l~~~~~~~~v~   69 (165)
T 3or5_A            6 QADARPTP----APSFSGVTVDG---------KPFSSAS-LKGK-AYIVNFFATWCPPCRSE-IPDMVQVQKTWASRGFT   69 (165)
T ss_dssp             -CCCCCCB----CCCCEEECTTS---------CEEEGGG-GTTC-EEEEEEECTTSHHHHHH-HHHHHHHHHHHTTTTEE
T ss_pred             hhhcCCCC----CCCceeeCCCC---------CEechhH-cCCC-EEEEEEEcCcCHHHHHH-HHHHHHHHHHhccCCeE
Confidence            45788999    69999999886         8999999 5998 56677889999999999 99999999999998998


Q ss_pred             EEEEEecCC-HHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808          113 SVICVAVND-PYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       113 ~vi~IS~d~-~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~  186 (203)
                       +++|+.|+ +...++|.++++++  ||++.|.+ ++.+.|+.....     +....|++|||| +|+|++.+.+.
T Consensus        70 -~v~v~~d~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~-----~i~~~P~~~lid~~G~i~~~~~g~  136 (165)
T 3or5_A           70 -FVGIAVNEQLPNVKNYMKTQGII--YPVMMATP-ELIRAFNGYIDG-----GITGIPTSFVIDASGNVSGVIVGP  136 (165)
T ss_dssp             -EEEEECSCCHHHHHHHHHHHTCC--SCEEECCH-HHHHHHHTTSTT-----CSCSSSEEEEECTTSBEEEEECSC
T ss_pred             -EEEEECCCCHHHHHHHHHHcCCC--CceEecCH-HHHHHHhhhhcc-----CCCCCCeEEEECCCCcEEEEEcCC
Confidence             99999886 67889999999996  99999976 899999654321     123468899999 99999988764

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=99.89  E-value=6.8e-23  Score=159.36  Aligned_cols=127  Identities=12%  Similarity=0.118  Sum_probs=103.4

Q ss_pred             C-CceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCC-CCccchhhHHHhHHHHHH----cCCcEEEEEe
Q 028808           45 A-QDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGV-CSNQHVPSYKNNIDKFKA----KGIDSVICVA  118 (203)
Q Consensus        45 A-Pdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~-C~~ehl~~l~~~~~~f~~----~gv~~vi~IS  118 (203)
                      + |+|++++.+|         ++++|++ ++|| ++|++||++|||+ |..+ +|.|++++++|++    .+++ |++||
T Consensus         5 ~~p~f~l~~~~G---------~~~~l~~-~~gk-~vll~F~~~~C~~~C~~~-~~~l~~l~~~~~~~~~~~~v~-vv~is   71 (171)
T 2rli_A            5 GQGDFHLLDHRG---------RARCKAD-FRGQ-WVLMYFGFTHCPDICPDE-LEKLVQVVRQLEAEPGLPPVQ-PVFIT   71 (171)
T ss_dssp             CCSCCEEEETTS---------CEEETTT-TTTS-EEEEEEECTTCSSSHHHH-HHHHHHHHHHHHHSTTSCCEE-EEEEE
T ss_pred             CCCCeEEEeCCC---------CEEeHHH-hCCC-EEEEEEEcCCCCchhHHH-HHHHHHHHHHHhhccCCCceE-EEEEE
Confidence            6 9999999886         8999999 5998 5778899999997 9999 9999999999986    5888 99999


Q ss_pred             cC----CHHHHHHHHHHhCCCCceEEEeeCC---chHHHHcCCccccccc----cCCCCcceEEEEEe-CCEEEEEEeec
Q 028808          119 VN----DPYVMNGWAEKLQAKDVIEFYGDFD---GSFHKSLDLGKDLSAA----LLGPRSERWSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       119 ~d----~~~~~~~~~~~~~l~~~fpllsD~~---~~v~~~yGv~~~~~~~----g~~~~~~r~tfIId-dG~I~~~~~~~  186 (203)
                      .|    +++.+++|+++++++  |++++|..   .+++++||+.......    +......|++|||| +|+|++++.+.
T Consensus        72 ~d~~~d~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~  149 (171)
T 2rli_A           72 VDPERDDVEAMARYVQDFHPR--LLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRS  149 (171)
T ss_dssp             SCSTTCCHHHHHHHHHTTCTT--CCEEECCHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESS
T ss_pred             ECCCCCCHHHHHHHHHHcCCC--eEEEeCCHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCC
Confidence            87    478899999999986  99999753   5799999997532100    00011235799999 99999998754

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=99.89  E-value=2.1e-23  Score=170.33  Aligned_cols=133  Identities=11%  Similarity=0.076  Sum_probs=99.5

Q ss_pred             ccCCCccccCCCceEEeccc-cccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcE
Q 028808           35 VAVGSDIVSAAQDVSLQKAR-TWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDS  113 (203)
Q Consensus        35 ~~~G~~~~~~APdf~l~~~~-g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~  113 (203)
                      ...+++    +|+|++++.+ |         +.++|++ ++|| +||++||++|||+|..| +|.|++++++|+++|+. 
T Consensus        20 ~~~~~~----~p~f~l~~~~~G---------~~v~l~~-~~Gk-~vlv~FwatwC~~C~~e-~p~l~~l~~~~~~~g~~-   82 (208)
T 2f8a_A           20 FQSMQS----VYAFSARPLAGG---------EPVSLGS-LRGK-VLLIENVASLGGTTVRD-YTQMNELQRRLGPRGLV-   82 (208)
T ss_dssp             --CCCC----GGGCEECBTTCS---------SCEEGGG-GTTS-EEEEEEECSSSTTHHHH-HHHHHHHHHHHGGGTEE-
T ss_pred             hhhcCc----cCceEeeeCCCC---------CCccHHH-cCCC-EEEEEEECCCCccHHHH-HHHHHHHHHHccCCCeE-
Confidence            344666    6999999987 6         8999999 5998 67889999999999999 99999999999999998 


Q ss_pred             EEEEecC--------CHHHHHHHHH------HhCCCCceEEEeeCC--chHHH--------HcCC--------ccccc--
Q 028808          114 VICVAVN--------DPYVMNGWAE------KLQAKDVIEFYGDFD--GSFHK--------SLDL--------GKDLS--  159 (203)
Q Consensus       114 vi~IS~d--------~~~~~~~~~~------~~~l~~~fpllsD~~--~~v~~--------~yGv--------~~~~~--  159 (203)
                      ||+||.|        ++..+++|++      +++++  ||+++|.+  +..+.        .++.        .....  
T Consensus        83 vv~v~~d~~~~~e~d~~~~i~~f~~~~~~~~~~~~~--fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  160 (208)
T 2f8a_A           83 VLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPN--FMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLI  160 (208)
T ss_dssp             EEEEECCCSTTTTCSCHHHHHHHHHHTSSCTTCCCS--SEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGC
T ss_pred             EEEEECCcccccCCCCHHHHHHHHHhcccccccccc--eEEEEEeecCCCCccHHHHHHHhcCCCccccchhhccccccc
Confidence            9999986        4578899998      78886  99997643  33221        2221        00000  


Q ss_pred             ---ccc-CCCCcceEEEEEe-CCEEEEEEeec
Q 028808          160 ---AAL-LGPRSERWSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       160 ---~~g-~~~~~~r~tfIId-dG~I~~~~~~~  186 (203)
                         ..+ .+....|++|||| +|+|++++.+.
T Consensus       161 ~~~~~~~~~i~~~p~tflID~~G~i~~~~~g~  192 (208)
T 2f8a_A          161 TWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRR  192 (208)
T ss_dssp             CSSSCCTTCCCSTTCEEEECTTSCEEEEECTT
T ss_pred             cccccccCccccCceEEEEcCCCcEEEEeCCC
Confidence               000 0122348899999 99999999764

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=99.89  E-value=1.7e-23  Score=171.21  Aligned_cols=126  Identities=15%  Similarity=0.109  Sum_probs=95.5

Q ss_pred             CCceEEeccc-cccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC---
Q 028808           45 AQDVSLQKAR-TWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN---  120 (203)
Q Consensus        45 APdf~l~~~~-g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d---  120 (203)
                      +|+|++++.+ |         +.++|++ ++|| +||++||++|||+| .| +|.|++++++|+++|+. ||+||+|   
T Consensus        17 ~pdF~l~d~~~G---------~~v~Ls~-~kGK-vvll~F~At~C~~c-~e-~p~L~~l~~~~~~~g~~-vlgvs~d~f~   82 (207)
T 2r37_A           17 IYEYGALTIDGE---------EYIPFKQ-YAGK-YVLFVNVASYGGLT-GQ-YIELNALQEELAPFGLV-ILGFPCNQFG   82 (207)
T ss_dssp             GGGCEEEBTTSS---------CEEEGGG-GTTS-EEEEEEECSSSTTT-TH-HHHHHHHHHHHGGGTEE-EEEEECCCBT
T ss_pred             cCCeEeeeCCCC---------CEEcHHH-hCCC-EEEEEEeCCCCCCh-HH-HHHHHHHHHHhccCCEE-EEEEECcccC
Confidence            6999999997 6         8999999 5998 77888999999999 79 99999999999999998 9999964   


Q ss_pred             -----CHHHHHHHHH------HhCCCCceEEEeeCC--chHH-HHcCCccccc-----ccc------------CCCCcce
Q 028808          121 -----DPYVMNGWAE------KLQAKDVIEFYGDFD--GSFH-KSLDLGKDLS-----AAL------------LGPRSER  169 (203)
Q Consensus       121 -----~~~~~~~~~~------~~~l~~~fpllsD~~--~~v~-~~yGv~~~~~-----~~g------------~~~~~~r  169 (203)
                           ++..+++|++      +++++  ||+++|.+  +..+ ..|+......     ..|            ......|
T Consensus        83 ~~e~~~~~~i~~f~~~~~~~~~~~~~--fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~  160 (207)
T 2r37_A           83 KQEPGENSEILPTLKYVRPGGGFVPN--FQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNF  160 (207)
T ss_dssp             TCCCSCHHHHHHHHHHTSSCTTCCCS--SEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTT
T ss_pred             cCCCCCHHHHHHHHHhcchhhccCcc--ceeeeEeccCCcccchHHHHHHhhCccccccccccccccccccccCcccccc
Confidence                 4578899999      88986  99998753  4321 1222111000     000            0011236


Q ss_pred             EEEEEe-CCEEEEEEeec
Q 028808          170 WSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       170 ~tfIId-dG~I~~~~~~~  186 (203)
                      ++|||| +|+|++++.+.
T Consensus       161 ttflID~~G~i~~~~~g~  178 (207)
T 2r37_A          161 EKFLVGPDGIPIMRWHHR  178 (207)
T ss_dssp             CEEEECTTSCEEEEECTT
T ss_pred             eEEEECCCCcEEEEECCC
Confidence            899999 99999998753

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.89  E-value=1.1e-23  Score=161.49  Aligned_cols=129  Identities=11%  Similarity=0.154  Sum_probs=102.9

Q ss_pred             CCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHH
Q 028808           45 AQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYV  124 (203)
Q Consensus        45 APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~  124 (203)
                      +|+|++. .+|         +.++|++ ++|| +||++||++|||+|..+ +|.|++++++|++.++. +++|+.|+++.
T Consensus         5 a~~~~~~-~~G---------~~~~l~~-~~gk-~vlv~F~a~wC~~C~~~-~~~l~~l~~~~~~~~v~-vv~v~~d~~~~   70 (151)
T 3raz_A            5 ADELAGW-KDN---------TPQSLQS-LKAP-VRIVNLWATWCGPCRKE-MPAMSKWYKAQKKGSVD-MVGIALDTSDN   70 (151)
T ss_dssp             --CEEET-TTC---------CEECGGG-CCSS-EEEEEEECTTCHHHHHH-HHHHHHHHHTSCTTTEE-EEEEESSCHHH
T ss_pred             cchhhcc-cCC---------CEecHHH-hCCC-EEEEEEEcCcCHHHHHH-HHHHHHHHHHhccCCeE-EEEEECCChHH
Confidence            4566553 454         8999999 5998 67778999999999999 99999999999888998 99999999999


Q ss_pred             HHHHHHHhCCCCceEEEeeCC---chHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCCcccCCHHHHH
Q 028808          125 MNGWAEKLQAKDVIEFYGDFD---GSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSKMKVSGGDVIL  200 (203)
Q Consensus       125 ~~~~~~~~~l~~~fpllsD~~---~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~~~~~~a~~vL  200 (203)
                      +++|+++++++  ||++.|.+   ..+++.||...         ...|++|||| +|+|++.+.+.    .+.++.++.|
T Consensus        71 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v---------~~~P~~~lid~~G~i~~~~~g~----~~~~~l~~~l  135 (151)
T 3raz_A           71 IGNFLKQTPVS--YPIWRYTGANSRNFMKTYGNTV---------GVLPFTVVEAPKCGYRQTITGE----VNEKSLTDAV  135 (151)
T ss_dssp             HHHHHHHSCCS--SCEEEECCSCHHHHHHTTTCCS---------CCSSEEEEEETTTTEEEECCSC----CCHHHHHHHH
T ss_pred             HHHHHHHcCCC--CceEecCccchHHHHHHhCCcc---------CCCCEEEEECCCCcEEEEECCC----CCHHHHHHHH
Confidence            99999999996  99999873   45788888321         1358899999 99999998754    2334555555


Q ss_pred             hc
Q 028808          201 GQ  202 (203)
Q Consensus       201 ~~  202 (203)
                      ++
T Consensus       136 ~~  137 (151)
T 3raz_A          136 KL  137 (151)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=99.89  E-value=1.7e-23  Score=162.40  Aligned_cols=134  Identities=15%  Similarity=0.242  Sum_probs=111.6

Q ss_pred             ccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCc
Q 028808           33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID  112 (203)
Q Consensus        33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~  112 (203)
                      ...++|++    +|+|++.+.+|         +.++|++ ++|| ++|+.||++|||+|..+ ++.|.+++++|+  ++.
T Consensus         9 ~~~~~g~~----~p~~~l~~~~g---------~~~~l~~-~~gk-~~lv~F~~~~C~~C~~~-~~~l~~l~~~~~--~v~   70 (165)
T 3ha9_A            9 HSEEVLER----EASFSLTTIDG---------EVISLNN-VGGD-VVILWFMAAWCPSCVYM-ADLLDRLTEKYR--EIS   70 (165)
T ss_dssp             HHHHHHHH----HHCCCEEBTTS---------CEECGGG-CCSS-EEEEEEECTTCTTHHHH-HHHHHHHHHHCT--TEE
T ss_pred             ccccccCc----CCCCEeecCCC---------CEeeHHH-hCCC-EEEEEEECCCCcchhhh-HHHHHHHHHHcC--CcE
Confidence            35678999    59999999886         8999999 5998 66778899999999999 999999999997  788


Q ss_pred             EEEEEecC-------------------CHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEE
Q 028808          113 SVICVAVN-------------------DPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAY  173 (203)
Q Consensus       113 ~vi~IS~d-------------------~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfI  173 (203)
                       |++|+.|                   ++...++|.++++++ +||++.| +.++++.||+..           .|++||
T Consensus        71 -vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d-~~~~~~~~~v~~-----------~P~~~l  136 (165)
T 3ha9_A           71 -VIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDP-SWIMVMD-DGSLVEKFNVRS-----------IDYIVI  136 (165)
T ss_dssp             -EEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCT-TSEEEEC-CSHHHHHTTCCS-----------SSEEEE
T ss_pred             -EEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCC-CeeEEeC-hHHHHHHhCCCC-----------ceEEEE
Confidence             9999997                   678899999999994 4999999 999999999853           478999


Q ss_pred             Ee-CCEEEEEEeecCCCCcccCCHHHHHhcC
Q 028808          174 VE-DGRIKALNVEEAPSKMKVSGGDVILGQI  203 (203)
Q Consensus       174 Id-dG~I~~~~~~~~~~~~~~~~a~~vL~~l  203 (203)
                      || +|+|++  .+..+   +.+..++.|++|
T Consensus       137 id~~G~i~~--~g~~~---~~~~l~~~l~~l  162 (165)
T 3ha9_A          137 MDKSSNVLY--AGTTP---SLGELESVIKSV  162 (165)
T ss_dssp             EETTCCEEE--EEESC---CHHHHHHHHHHC
T ss_pred             EcCCCcEEE--eCCCC---CHHHHHHHHHHH
Confidence            99 999999  44321   245555665543

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=99.88  E-value=2.6e-23  Score=161.60  Aligned_cols=134  Identities=16%  Similarity=0.186  Sum_probs=109.2

Q ss_pred             ccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCC-CCccchhhHHHhHHHHHHc--
Q 028808           33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGV-CSNQHVPSYKNNIDKFKAK--  109 (203)
Q Consensus        33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~-C~~ehl~~l~~~~~~f~~~--  109 (203)
                      ....+|++    +|+|++++.+         + .++|++ ++|| +||++||++|||+ |..+ +|.|++++++|+++  
T Consensus         8 ~~~~~G~~----~p~f~l~~~~---------g-~~~l~~-~~gk-~vll~f~~~~C~~~C~~~-~~~l~~~~~~~~~~~~   70 (172)
T 2k6v_A            8 GTRLLNPK----PVDFALEGPQ---------G-PVRLSQ-FQDK-VVLLFFGFTRCPDVCPTT-LLALKRAYEKLPPKAQ   70 (172)
T ss_dssp             SEEEEEEE----ECCCEEECSS---------S-EEEGGG-STTS-EEEEEEECTTCSSHHHHH-HHHHHHHHTTSCHHHH
T ss_pred             cccccCCC----CCCeEEEcCC---------C-CCcHHH-hCCC-EEEEEEECCCCcchhHHH-HHHHHHHHHHhhhhcc
Confidence            34557888    5999999875         3 799999 5998 6778899999997 9999 99999999999876  


Q ss_pred             -CCcEEEEEecC----CHHHHHHHHHHhCCCCceEEEeeCC---chHHHHcCCccccccc----cCCCCcceEEEEEeCC
Q 028808          110 -GIDSVICVAVN----DPYVMNGWAEKLQAKDVIEFYGDFD---GSFHKSLDLGKDLSAA----LLGPRSERWSAYVEDG  177 (203)
Q Consensus       110 -gv~~vi~IS~d----~~~~~~~~~~~~~l~~~fpllsD~~---~~v~~~yGv~~~~~~~----g~~~~~~r~tfIIddG  177 (203)
                       +++ |++||.|    +++.+++|+++++++  |++++|.+   .+++++||+.......    ..+....|++||||+|
T Consensus        71 ~~v~-vv~is~d~~~d~~~~~~~~~~~~~~~--~~~l~d~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid~G  147 (172)
T 2k6v_A           71 ERVQ-VIFVSVDPERDPPEVADRYAKAFHPS--FLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVKEG  147 (172)
T ss_dssp             TTEE-EEEEESCTTTCCHHHHHHHHHHHCTT--EEEECCCHHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEETT
T ss_pred             CCEE-EEEEEECCCCCCHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEECC
Confidence             788 9999976    568899999999986  99999998   7899999997532210    0111245889999999


Q ss_pred             EEEEEEeec
Q 028808          178 RIKALNVEE  186 (203)
Q Consensus       178 ~I~~~~~~~  186 (203)
                      +|++++.+.
T Consensus       148 ~i~~~~~g~  156 (172)
T 2k6v_A          148 RLVLLYSPD  156 (172)
T ss_dssp             EEEEEECHH
T ss_pred             EEEEEECCC
Confidence            999998765

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.1e-23  Score=165.26  Aligned_cols=121  Identities=13%  Similarity=0.140  Sum_probs=85.7

Q ss_pred             CCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC----
Q 028808           45 AQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN----  120 (203)
Q Consensus        45 APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d----  120 (203)
                      +|+|+++|.+|         ++++|++ ++|| +||++||++|||+|. + +|.|++++++|+++|+. |++||.|    
T Consensus        12 ~~~f~l~d~~G---------~~~~l~~-~~Gk-~vll~F~a~wC~~C~-~-~~~l~~l~~~~~~~~v~-vv~vs~d~~~~   77 (171)
T 3cmi_A           12 FYKLAPVDKKG---------QPFPFDQ-LKGK-VVLIVNVASKCGFTP-Q-YKELEALYKRYKDEGFT-IIGFPCNQFGH   77 (171)
T ss_dssp             GGGCCCBBTTS---------CBCCGGG-GTTC-EEEEEEEESSSCCHH-H-HHHHHHHHHHHGGGTEE-EEEEEECSCC-
T ss_pred             eeeeEEEcCCC---------CEecHHH-cCCC-EEEEEEEecCCCcch-h-HHHHHHHHHHhccCCeE-EEEEECcccCC
Confidence            69999999986         8999999 5998 567789999999999 9 99999999999999998 9999984    


Q ss_pred             ----CHHHHHHHH-HHhCCCCceEEEeeCC--ch-HHH--------HcCCccccccccCCCCcceEEEEEe-CCEEEEEE
Q 028808          121 ----DPYVMNGWA-EKLQAKDVIEFYGDFD--GS-FHK--------SLDLGKDLSAALLGPRSERWSAYVE-DGRIKALN  183 (203)
Q Consensus       121 ----~~~~~~~~~-~~~~l~~~fpllsD~~--~~-v~~--------~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~  183 (203)
                          +++.+++|+ ++++++  ||+++|.+  +. ..+        .||+...+.     ....|++|||| +|+|++++
T Consensus        78 ~~~d~~~~~~~~~~~~~~~~--~p~~~d~d~~~~~~~~~~~~~~~~~~~v~~~P~-----i~~~~~~~lid~~G~i~~~~  150 (171)
T 3cmi_A           78 QEPGSDEEIAQFCQLNYGVT--FPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRG-----IKWNFEKFLVDKKGKVYERY  150 (171)
T ss_dssp             -----------------CCC--SCBBCCCBSSSTTBCHHHHHHHHHSCCSSSCCS-----CCSTTCEEEECSSSCEEEEE
T ss_pred             CCCCCHHHHHHHHHhccCCC--ceEEeeccCCCccchHHHHHHHhccCCcCCCCc-----ccccceEEEECCCCCEEEEe
Confidence                556788999 999996  99999753  33 222        344432100     01123899999 99999998


Q ss_pred             eec
Q 028808          184 VEE  186 (203)
Q Consensus       184 ~~~  186 (203)
                      .+.
T Consensus       151 ~g~  153 (171)
T 3cmi_A          151 SSL  153 (171)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            753

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.88  E-value=6e-23  Score=154.88  Aligned_cols=121  Identities=12%  Similarity=0.170  Sum_probs=105.5

Q ss_pred             ccCCCccccCCCceEE--eccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCc
Q 028808           35 VAVGSDIVSAAQDVSL--QKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID  112 (203)
Q Consensus        35 ~~~G~~~~~~APdf~l--~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~  112 (203)
                      +++|++    +|+|++  .+.+|         +.+++++ ++||+ +|+.||++|||+|..+ ++.|++++++|+++ +.
T Consensus         1 l~~g~~----~P~f~~~~~~~~g---------~~~~~~~-~~gk~-~lv~f~~~~C~~C~~~-~~~l~~l~~~~~~~-~~   63 (148)
T 2b5x_A            1 MKLRQP----MPELTGEKAWLNG---------EVTREQL-IGEKP-TLIHFWSISCHLCKEA-MPQVNEFRDKYQDQ-LN   63 (148)
T ss_dssp             CCTTCB----CCCCCCCSEEESC---------CCCHHHH-TTTSC-EEEEEECTTCHHHHHH-HHHHHHHHHHHTTT-SE
T ss_pred             CCCCCC----CCCCccccccccC---------cccchhh-cCCCE-EEEEEEcCCCHHHHHH-hHHHHHHHHHhcCC-cE
Confidence            467888    699999  56665         7899999 48884 6667899999999999 99999999999877 88


Q ss_pred             EEEEEecC------CHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEee
Q 028808          113 SVICVAVN------DPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVE  185 (203)
Q Consensus       113 ~vi~IS~d------~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~  185 (203)
                       +++|+.|      ++...++|.++++++  ||++.|.+.++++.||+..           .|++|||| +|+|++.+.+
T Consensus        64 -~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~v~~-----------~P~~~lid~~G~i~~~~~g  129 (148)
T 2b5x_A           64 -VVAVHMPRSEDDLDPGKIKETAAEHDIT--QPIFVDSDHALTDAFENEY-----------VPAYYVFDKTGQLRHFQAG  129 (148)
T ss_dssp             -EEEEECCCSTTTSSHHHHHHHHHHTTCC--SCEEECSSCHHHHHTCCCC-----------SSEEEEECTTCBEEEEEES
T ss_pred             -EEEEEcCCCccccCHHHHHHHHHHcCCC--cceEECCchhHHHHhCCCC-----------CCEEEEECCCCcEEEEecC
Confidence             9999987      578899999999996  9999999999999999853           47899999 9999999876


Q ss_pred             c
Q 028808          186 E  186 (203)
Q Consensus       186 ~  186 (203)
                      .
T Consensus       130 ~  130 (148)
T 2b5x_A          130 G  130 (148)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=99.88  E-value=1.8e-22  Score=157.02  Aligned_cols=125  Identities=15%  Similarity=0.197  Sum_probs=103.8

Q ss_pred             ccccccccCCCccccCCCceEEecc--ccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHH
Q 028808           29 SRAYASVAVGSDIVSAAQDVSLQKA--RTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKF  106 (203)
Q Consensus        29 ~~~~~~~~~G~~~~~~APdf~l~~~--~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f  106 (203)
                      ......+.+|++    +|+|++++.  +|         +.+++.++.+|| ++|++||++|||+|..+ +|.|++++++ 
T Consensus        16 ~~~~~~~~~G~~----~P~f~l~~~~~~g---------~~~~~~~~~~gk-~vll~F~a~~C~~C~~~-~~~l~~l~~~-   79 (168)
T 2b1k_A           16 PTNLESALIGKP----VPKFRLESLDNPG---------QFYQADVLTQGK-PVLLNVWATWCPTCRAE-HQYLNQLSAQ-   79 (168)
T ss_dssp             ---CCCTTTTSB----CCCCEEEESSSTT---------CEEEGGGGCCSS-CEEEEEECTTCHHHHHH-HHHHHHHHHT-
T ss_pred             cccccccccCCc----CCCeEeecccCCC---------cEeehhHhcCCC-EEEEEEECCCCHHHHHH-HHHHHHHHHC-
Confidence            444567889999    699999998  54         789998855888 56677889999999999 8999887654 


Q ss_pred             HHcCCcEEEEEecC-CHHHHHHHHHHhCCCCceE-EEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEE
Q 028808          107 KAKGIDSVICVAVN-DPYVMNGWAEKLQAKDVIE-FYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALN  183 (203)
Q Consensus       107 ~~~gv~~vi~IS~d-~~~~~~~~~~~~~l~~~fp-llsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~  183 (203)
                         |+. +++|+.| ++...++|.++++++  |+ ++.|.+.++++.||+..           .|++|||| +|+|++.+
T Consensus        80 ---~v~-vv~v~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~v~~-----------~P~~~lid~~G~i~~~~  142 (168)
T 2b1k_A           80 ---GIR-VVGMNYKDDRQKAISWLKELGNP--YALSLFDGDGMLGLDLGVYG-----------APETFLIDGNGIIRYRH  142 (168)
T ss_dssp             ---TCC-EEEEEESCCHHHHHHHHHHHCCC--CSEEEEETTCHHHHHHTCCS-----------SSEEEEECTTSBEEEEE
T ss_pred             ---CCE-EEEEECCCChHHHHHHHHHcCCC--CceeeECcchHHHHHcCccc-----------cCEEEEECCCCeEEEEE
Confidence               898 9999975 467899999999997  77 68899999999999853           47899999 99999998


Q ss_pred             eec
Q 028808          184 VEE  186 (203)
Q Consensus       184 ~~~  186 (203)
                      .+.
T Consensus       143 ~g~  145 (168)
T 2b1k_A          143 AGD  145 (168)
T ss_dssp             ESC
T ss_pred             eCC
Confidence            864

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.88  E-value=2.4e-22  Score=149.73  Aligned_cols=112  Identities=13%  Similarity=0.165  Sum_probs=99.5

Q ss_pred             CCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC-H
Q 028808           44 AAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND-P  122 (203)
Q Consensus        44 ~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~-~  122 (203)
                      +||+|++++.+|         +.++++++ +||+ +|+.||++|||+|..+ ++.|+++++++.  ++. +++|+.|+ +
T Consensus         3 ~~p~~~l~~~~g---------~~~~l~~~-~~k~-~lv~f~~~~C~~C~~~-~~~l~~~~~~~~--~~~-~~~v~~~~~~   67 (136)
T 1lu4_A            3 ERLQFTATTLSG---------APFDGASL-QGKP-AVLWFWTPWCPFCNAE-APSLSQVAAANP--AVT-FVGIATRADV   67 (136)
T ss_dssp             GGGCCEEEBTTS---------CEEEGGGG-TTSC-EEEEEECTTCHHHHHH-HHHHHHHHHHCT--TSE-EEEEECSSCH
T ss_pred             CCCCeEeecCCC---------CeecHHHh-CCCE-EEEEEECCcChhHHHH-HHHHHHHHHHCC--CcE-EEEEEcCCCH
Confidence            479999999886         89999994 9985 5667889999999999 999999999987  788 99999987 7


Q ss_pred             HHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEe
Q 028808          123 YVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNV  184 (203)
Q Consensus       123 ~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~  184 (203)
                      ...++|.++++++  ||++.|.+.++++.||+..           .|+++||| +|+|+ .+.
T Consensus        68 ~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~i~~-----------~P~~~lid~~G~i~-~~~  116 (136)
T 1lu4_A           68 GAMQSFVSKYNLN--FTNLNDADGVIWARYNVPW-----------QPAFVFYRADGTST-FVN  116 (136)
T ss_dssp             HHHHHHHHHHTCC--SEEEECTTSHHHHHTTCCS-----------SSEEEEECTTSCEE-EEC
T ss_pred             HHHHHHHHHcCCC--ceEEECCchhHHHhcCCCC-----------CCEEEEECCCCcEE-EEE
Confidence            8899999999996  9999999999999999853           47899999 99999 666

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=99.88  E-value=1.3e-22  Score=178.48  Aligned_cols=125  Identities=18%  Similarity=0.185  Sum_probs=111.3

Q ss_pred             cccccCCCccccCCCceE-----EeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHH
Q 028808           32 YASVAVGSDIVSAAQDVS-----LQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKF  106 (203)
Q Consensus        32 ~~~~~~G~~~~~~APdf~-----l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f  106 (203)
                      ...+++|++    ||+|+     +.+.+|         +.++|++ ++|| +||++||++|||+|..+ +|.|++++++|
T Consensus        48 ~~~l~vG~~----aPdF~~~~~wL~d~dG---------~~vsLsd-l~GK-~vLl~F~atwC~~C~~~-~p~L~~l~~~~  111 (352)
T 2hyx_A           48 AAQLESCGT----APDLKGITGWLNTPGN---------KPIDLKS-LRGK-VVLIDFWAYSCINCQRA-IPHVVGWYQAY  111 (352)
T ss_dssp             CSSCCCCCB----CCCCCSCCEEESSGGG---------CCCCGGG-GTTS-EEEEEEECTTCHHHHHH-HHHHHHHHHHH
T ss_pred             ccccCCCCc----CCCccccccccCCCCC---------CEEcHHH-hCCC-EEEEEEECCCChhHHHH-HHHHHHHHHHh
Confidence            346889999    69999     888876         8999999 5998 57778999999999999 99999999999


Q ss_pred             HHcCCcEEEEEecC------CHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEE
Q 028808          107 KAKGIDSVICVAVN------DPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRI  179 (203)
Q Consensus       107 ~~~gv~~vi~IS~d------~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I  179 (203)
                      +++|+. ||+|+.|      +++.+++|+++++++  ||++.|.+.++++.|++..           .|++|||| +|+|
T Consensus       112 ~~~~v~-vi~Vs~d~~~~~d~~~~~~~~~~~~~l~--fpv~~D~~~~l~~~ygV~~-----------~Pt~~lID~~G~I  177 (352)
T 2hyx_A          112 KDSGLA-VIGVHTPEYAFEKVPGNVAKGAANLGIS--YPIALDNNYATWTNYRNRY-----------WPAEYLIDATGTV  177 (352)
T ss_dssp             GGGTEE-EEEEECCSSGGGGCHHHHHHHHHHHTCC--SCEEECTTSHHHHHTTCCE-----------ESEEEEECTTSBE
T ss_pred             hcCCeE-EEEEECCcccccCCHHHHHHHHHHcCCC--ccEEeCCcHHHHHHcCCCc-----------cCEEEEEeCCCeE
Confidence            998998 9999975      578899999999996  9999999999999999853           57899999 9999


Q ss_pred             EEEEeec
Q 028808          180 KALNVEE  186 (203)
Q Consensus       180 ~~~~~~~  186 (203)
                      ++.+.+.
T Consensus       178 v~~~~G~  184 (352)
T 2hyx_A          178 RHIKFGE  184 (352)
T ss_dssp             EEEEESB
T ss_pred             EEEEcCC
Confidence            9999864

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.88  E-value=8.7e-23  Score=156.20  Aligned_cols=130  Identities=14%  Similarity=0.195  Sum_probs=110.1

Q ss_pred             cccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcE
Q 028808           34 SVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDS  113 (203)
Q Consensus        34 ~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~  113 (203)
                      .+++|++    +|+|++++.+|         +.++++++ + | ++|++||++|||+|..+ ++.|.++++++   +++ 
T Consensus         4 ~l~~g~~----~p~f~l~~~~g---------~~~~l~~~-~-k-~vll~f~~~~C~~C~~~-~~~l~~l~~~~---~v~-   62 (154)
T 3ia1_A            4 AVKPGEP----LPDFLLLDPKG---------QPVTPATV-S-K-PAVIVFWASWCTVCKAE-FPGLHRVAEET---GVP-   62 (154)
T ss_dssp             CCCSBEE----CCCCCEECTTS---------CEECTTTS-C-S-SEEEEEECTTCHHHHHH-HHHHHHHHHHH---CCC-
T ss_pred             cCCCCCc----CCceEEECCCC---------CEechHHc-C-C-eEEEEEEcccChhHHHH-HHHHHHHHHHc---CCe-
Confidence            5889999    69999999876         89999994 7 7 56677899999999999 99999999999   798 


Q ss_pred             EEEEec---CCHHHHHHHHHHhCCCCceEEEee---CCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808          114 VICVAV---NDPYVMNGWAEKLQAKDVIEFYGD---FDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       114 vi~IS~---d~~~~~~~~~~~~~l~~~fpllsD---~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~  186 (203)
                      +++|+.   +++...++|.++++++  ||++.|   .+.++++.||+..           .|++|||| +|+|++.+.+.
T Consensus        63 ~v~v~~d~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~v~~-----------~P~~~lid~~G~i~~~~~g~  129 (154)
T 3ia1_A           63 FYVISREPRDTREVVLEYMKTYPRF--IPLLASDRDRPHEVAARFKVLG-----------QPWTFVVDREGKVVALFAGR  129 (154)
T ss_dssp             EEEEECCTTCCHHHHHHHHTTCTTE--EECBCCSSCCHHHHHTTSSBCS-----------SCEEEEECTTSEEEEEEESB
T ss_pred             EEEEeCCCcccHHHHHHHHHHcCCC--cccccccccchHHHHHHhCCCc-----------ccEEEEECCCCCEEEEEcCC
Confidence            999999   7788999999999995  999999   7889999998852           47899999 99999998764


Q ss_pred             CCCCcccCCHHHHHh
Q 028808          187 APSKMKVSGGDVILG  201 (203)
Q Consensus       187 ~~~~~~~~~a~~vL~  201 (203)
                      .    +.++.++.|+
T Consensus       130 ~----~~~~l~~~l~  140 (154)
T 3ia1_A          130 A----GREALLDALL  140 (154)
T ss_dssp             C----CHHHHHHHHH
T ss_pred             C----CHHHHHHHHH
Confidence            2    2344455544

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.88  E-value=1.7e-22  Score=149.55  Aligned_cols=129  Identities=16%  Similarity=0.240  Sum_probs=105.7

Q ss_pred             CCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEE------e
Q 028808           45 AQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICV------A  118 (203)
Q Consensus        45 APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~I------S  118 (203)
                      ||+|++++.+|         +.+++++ ++|| ++|+.||++|||+|..+ ++.|+++++++ ..++. +++|      +
T Consensus         2 ~p~f~l~~~~g---------~~~~l~~-~~gk-~~lv~f~~~~C~~C~~~-~~~l~~~~~~~-~~~~~-~v~i~~~~~~~   67 (138)
T 4evm_A            2 VADFELMGVDG---------KTYRLSD-YKGK-KVYLKFWASWCSICLAS-LPDTDEIAKEA-GDDYV-VLTVVSPGHKG   67 (138)
T ss_dssp             CCCCEEEBTTS---------CEEEGGG-GTTS-EEEEEECCTTCHHHHHH-HHHHHHHHHTC-TTTEE-EEEEECTTSTT
T ss_pred             CCcceeECCCC---------CEEEHHH-hCCC-EEEEEEEcCcCHHHHHH-HHHHHHHHHHh-CCCcE-EEEEEcCCCCc
Confidence            79999999876         8999999 5998 56778899999999999 99999999884 44677 8888      3


Q ss_pred             cCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCCcccCCHH
Q 028808          119 VNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSKMKVSGGD  197 (203)
Q Consensus       119 ~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~~~~~~a~  197 (203)
                      .++....++|.+++++. +||++.|.+.++++.||+..           .|++|||| +|+|++.+.+..    +.++..
T Consensus        68 ~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~v~~-----------~P~~~lid~~G~i~~~~~g~~----~~~~l~  131 (138)
T 4evm_A           68 EQSEADFKNWYKGLDYK-NLPVLVDPSGKLLETYGVRS-----------YPTQAFIDKEGKLVKTHPGFM----EKDAIL  131 (138)
T ss_dssp             CCCHHHHHHHHTTCCCT-TCCEEECTTCHHHHHTTCCS-----------SSEEEEECTTCCEEEEEESCC----CHHHHH
T ss_pred             hhhHHHHHHHHhhcCCC-CeeEEECcchHHHHHcCccc-----------CCeEEEECCCCcEEEeecCCC----cHHHHH
Confidence            45677899999999984 49999999999999999853           47899999 999999987542    234555


Q ss_pred             HHHhcC
Q 028808          198 VILGQI  203 (203)
Q Consensus       198 ~vL~~l  203 (203)
                      +.|++|
T Consensus       132 ~~l~~l  137 (138)
T 4evm_A          132 QTLKEL  137 (138)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            555543

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.86  E-value=1.8e-21  Score=144.44  Aligned_cols=114  Identities=16%  Similarity=0.213  Sum_probs=99.4

Q ss_pred             CCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC-HH
Q 028808           45 AQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND-PY  123 (203)
Q Consensus        45 APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~-~~  123 (203)
                      +|+|++++.+|         +.++++++ +||+ +|+.||++|||+|..+ ++.+++++++++  ++. +++|+.|+ ..
T Consensus         5 ~p~~~~~~~~g---------~~~~l~~~-~~k~-~ll~f~~~~C~~C~~~-~~~l~~~~~~~~--~~~-~~~v~~~~~~~   69 (136)
T 1zzo_A            5 QLQFSAKTLDG---------HDFHGESL-LGKP-AVLWFWAPWCPTCQGE-APVVGQVAASHP--EVT-FVGVAGLDQVP   69 (136)
T ss_dssp             GGCCEEEBTTS---------CEEEGGGG-TTSC-EEEEEECTTCHHHHHH-HHHHHHHHHHCT--TSE-EEEEECSSCHH
T ss_pred             CCCcccccCCC---------CEeeHHHh-CCCe-EEEEEEcCCChhHHHH-HHHHHHHHHHcC--CeE-EEEEeCCCCHH
Confidence            69999999886         89999994 9985 5667889999999999 999999999987  788 99999875 68


Q ss_pred             HHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808          124 VMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       124 ~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~  186 (203)
                      ..++|.++++++ +||++.|.+.++++.||+..           .|+++||| +|+|+ .+.+.
T Consensus        70 ~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~i~~-----------~P~~~~id~~g~i~-~~~g~  120 (136)
T 1zzo_A           70 AMQEFVNKYPVK-TFTQLADTDGSVWANFGVTQ-----------QPAYAFVDPHGNVD-VVRGR  120 (136)
T ss_dssp             HHHHHHHHTTCT-TSEEEECTTCHHHHHTTCCS-----------SSEEEEECTTCCEE-EEESC
T ss_pred             HHHHHHHHcCCC-ceEEEEcCCcHHHHHcCCCC-----------CceEEEECCCCCEE-EEecC
Confidence            899999999994 49999999999999999853           47899999 99999 66553

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=99.85  E-value=8.6e-21  Score=149.88  Aligned_cols=142  Identities=11%  Similarity=0.113  Sum_probs=103.7

Q ss_pred             CCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCC-CCCccchhhHHHhHHHHHHcC--CcE
Q 028808           37 VGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTG-VCSNQHVPSYKNNIDKFKAKG--IDS  113 (203)
Q Consensus        37 ~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp-~C~~ehl~~l~~~~~~f~~~g--v~~  113 (203)
                      +|.+    +|+|+|+|.+|         ++++|++ ++|| +||++||.+||| +|..+ ++.|.++++++++.|  +. 
T Consensus         8 ~~~~----~PdF~L~d~~G---------~~v~l~d-~~Gk-~vll~F~~t~Cp~~Cp~~-~~~l~~l~~~~~~~~~~v~-   70 (170)
T 4hde_A            8 LNWD----LETFQFTNQDG---------KPFGTKD-LKGK-VWVADFMFTNCQTVCPPM-TANMAKLQKMAKEEKLDVQ-   70 (170)
T ss_dssp             CCBC----CCCCEEECTTS---------CEEEHHH-HTTS-CEEEEEECTTCSSSHHHH-HHHHHHHHHHHHHTTCCCE-
T ss_pred             CCCc----CCCcEEECCCC---------CEEeHHH-hCCC-EEEEEEECCCCCCcccHH-HHHHHHHHHhhhcccccce-
Confidence            5777    69999999986         8999999 5998 577789999998 79999 999999999998765  65 


Q ss_pred             EEEEecC----CHHHHHHHHHHhCCC-CceEEEeeCCchH-----HHHcCCccccccccCCCCcceEEEEEe-CCEEEEE
Q 028808          114 VICVAVN----DPYVMNGWAEKLQAK-DVIEFYGDFDGSF-----HKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKAL  182 (203)
Q Consensus       114 vi~IS~d----~~~~~~~~~~~~~l~-~~fpllsD~~~~v-----~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~  182 (203)
                      +|+||.|    +++.+++|+++++.. .++.++.+.+.+.     ...|+........+ ...-.+++|||| +|+|+..
T Consensus        71 ~v~isvDp~~Dtp~~l~~y~~~~~~~~~~~~~ltg~~~~~~~~~~~~~~~~~~~~~~~~-~~~H~~~~~liD~~G~i~~~  149 (170)
T 4hde_A           71 FVSFSVDPDLDKPENLKAFIQKFTEDTSNWNLLTGYSLEDITKFSKDNFQSLVDKPENG-QVIHGTSFYLIDQNGKVMKK  149 (170)
T ss_dssp             EEEEESCTTTCCHHHHHHHHTTTCSCCTTEEEEBCSCHHHHHHHHHHHHCCCCBCCTTS-CCBCCCEEEEECTTSCEEEE
T ss_pred             eEeeecCcccccHHHHHHHHHHcCCCCCCceecCcccHHHHHHHHHhcccccccCCCCc-eEEeeeEEEEEcCCCeEEEE
Confidence            8889875    578899999998863 1577888765432     23355544322111 111135789999 9999998


Q ss_pred             EeecCCCCcccCCHHHHHh
Q 028808          183 NVEEAPSKMKVSGGDVILG  201 (203)
Q Consensus       183 ~~~~~~~~~~~~~a~~vL~  201 (203)
                      +.+...     .+.+++++
T Consensus       150 ~~g~~~-----~~~~~l~~  163 (170)
T 4hde_A          150 YSGISN-----TPYEDIIR  163 (170)
T ss_dssp             EESSSS-----CCHHHHHH
T ss_pred             ECCCCC-----CCHHHHHH
Confidence            876432     34555544

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=99.84  E-value=8.5e-22  Score=149.48  Aligned_cols=121  Identities=13%  Similarity=0.141  Sum_probs=102.4

Q ss_pred             CCCccccCCCc-eEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHH-cCCcEE
Q 028808           37 VGSDIVSAAQD-VSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKA-KGIDSV  114 (203)
Q Consensus        37 ~G~~~~~~APd-f~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~-~gv~~v  114 (203)
                      +|+.    +|+ |++++.+|         +.++|++ ++|| +||++||++|||+|..+ +|.|+++++++++ .++. |
T Consensus         3 ~~~~----~P~~f~l~~~~g---------~~~~l~~-~~gk-~vll~F~a~wC~~C~~~-~~~l~~l~~~~~~~~~~~-v   65 (144)
T 1i5g_A            3 LKKF----FPYSTNVLKGAA---------ADIALPS-LAGK-TVFFYFSASWCPPSRAF-TPQLIDFYKAHAEKKNFE-V   65 (144)
T ss_dssp             TTTS----CSSCSEEEETTE---------EEEEGGG-GTTS-EEEEEEECTTCHHHHHH-HHHHHHHHHHHTTTTTEE-E
T ss_pred             hhhh----CCCceEEEcCCC---------CEecHHH-cCCC-EEEEEEECCCCHHHHHH-HHHHHHHHHHhccCCCEE-E
Confidence            4566    699 99999986         8999999 4998 57788999999999999 9999999999985 6888 9


Q ss_pred             EEEecCC-HHHHHHHHHHhCCCCceEEEe-eCCchHHHHcCCccccccccCCCCcceEEEEEe--CCEEEEEEeec
Q 028808          115 ICVAVND-PYVMNGWAEKLQAKDVIEFYG-DFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE--DGRIKALNVEE  186 (203)
Q Consensus       115 i~IS~d~-~~~~~~~~~~~~l~~~fplls-D~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId--dG~I~~~~~~~  186 (203)
                      ++|+.|+ ....++|.+++++. +||++. |.+.+++++||+..           .|++||||  +|+|++.+...
T Consensus        66 v~v~~d~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~-----------~P~~~lid~~~G~i~~~~~~~  129 (144)
T 1i5g_A           66 MLISWDESAEDFKDYYAKMPWL-ALPFEDRKGMEFLTTGFDVKS-----------IPTLVGVEADSGNIITTQART  129 (144)
T ss_dssp             EEEECCSSHHHHHHHHTTCSSE-ECCTTCHHHHHHHHHHTTCCS-----------SSEEEEEETTTCCEEESCHHH
T ss_pred             EEEeCCCCHHHHHHHHHhCCcc-ccccCchHHHHHHHHHcCCCC-----------CCEEEEEECCCCcEEeccchh
Confidence            9999984 67889999998864 477776 66789999999853           47899998  89999987553

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.83  E-value=1.6e-21  Score=150.33  Aligned_cols=133  Identities=13%  Similarity=0.171  Sum_probs=105.4

Q ss_pred             ccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEE
Q 028808           35 VAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSV  114 (203)
Q Consensus        35 ~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~v  114 (203)
                      ..+|+.    +|  ++++.+|         +.+++++ ++|| ++|++||++|||+|..+ +|.|++++++|+..|++ |
T Consensus        14 ~~~~~~----~p--~l~~~~g---------~~~~~~~-~~gk-~vlv~F~a~~C~~C~~~-~~~l~~l~~~~~~~~~~-v   74 (164)
T 2h30_A           14 ATVPHT----MS--TMKTADN---------RPASVYL-KKDK-PTLIKFWASWCPLCLSE-LGQAEKWAQDAKFSSAN-L   74 (164)
T ss_dssp             CCHHHH----HT--TCEETTS---------SBGGGGC-CTTS-CEEEEECCTTCHHHHHH-HHHHHHHHTCGGGTTSE-E
T ss_pred             cccCCc----CC--ccCCCCC---------CEeeHHH-hCCC-EEEEEEECCCCHHHHHH-HHHHHHHHHHcccCCcE-E
Confidence            344555    36  6777775         7899999 5998 46677899999999999 99999999999999998 9


Q ss_pred             EEEecC------CHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecC
Q 028808          115 ICVAVN------DPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEA  187 (203)
Q Consensus       115 i~IS~d------~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~  187 (203)
                      |+|+.|      +....++|.++++++ .+++..|.+.++++.||+..           .|++|||| +|+|++.+.+..
T Consensus        75 v~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~v~~-----------~P~~~lid~~G~i~~~~~g~~  142 (164)
T 2h30_A           75 ITVASPGFLHEKKDGEFQKWYAGLNYP-KLPVVTDNGGTIAQNLNISV-----------YPSWALIGKDGDVQRIVKGSI  142 (164)
T ss_dssp             EEEECTTSTTCCCTTHHHHHHTTSCCT-TSCEEECTTCHHHHHTTCCS-----------SSEEEEECTTSCEEEEEESCC
T ss_pred             EEEEcCCCccccCHHHHHHHHHhCCCC-cceEEEcCchHHHHHcCCCc-----------cceEEEECCCCcEEEEEcCCC
Confidence            999975      345678888887875 48999999999999999853           47899999 999999987632


Q ss_pred             CCCcccCCHHHHHhc
Q 028808          188 PSKMKVSGGDVILGQ  202 (203)
Q Consensus       188 ~~~~~~~~a~~vL~~  202 (203)
                          +.++.++.|+.
T Consensus       143 ----~~~~l~~~i~~  153 (164)
T 2h30_A          143 ----NEAQALALIRN  153 (164)
T ss_dssp             ----CHHHHHHHHHC
T ss_pred             ----CHHHHHHHHHH
Confidence                23445555443

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=99.72  E-value=3.9e-22  Score=150.32  Aligned_cols=120  Identities=13%  Similarity=0.179  Sum_probs=99.7

Q ss_pred             CCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHH--cCCcEEEEEecCC-
Q 028808           45 AQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKA--KGIDSVICVAVND-  121 (203)
Q Consensus        45 APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~--~gv~~vi~IS~d~-  121 (203)
                      +|+|++++.+|         +.++|++.++||+++|++||++|||+|..+ +|.|++++++|++  .++. +++|+.|+ 
T Consensus         4 ~p~~~l~~~~g---------~~~~l~~~~~gk~~vll~F~a~wC~~C~~~-~~~l~~~~~~~~~~~~~~~-v~~v~~d~~   72 (143)
T 2lus_A            4 IQGIKLVKKNR---------CEVNANEALKDKDIIGFYFSAHWCPPCRGF-TPILADMYSELVDDSAPFE-IIFVSSDRS   72 (143)
Confidence            69999999886         899999944888467788999999999999 9999999999953  5788 99999985 


Q ss_pred             HHHHHHHHHHhCCCC-ceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808          122 PYVMNGWAEKLQAKD-VIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       122 ~~~~~~~~~~~~l~~-~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~  186 (203)
                      ++..++|+++++++. .+++..|.+.+++++||+..           .|++|||| +|+|++.+...
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-----------~P~~~lid~~G~i~~~~~~~  128 (143)
T 2lus_A           73 EDDMFQYMMESHGDWLAIPYRSGPASNVTAKYGITG-----------IPALVIVKKDGTLISMNGRG  128 (143)
Confidence            467889999998741 35666777889999999853           47789999 99999996543

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.82  E-value=6.6e-21  Score=145.50  Aligned_cols=131  Identities=13%  Similarity=0.112  Sum_probs=98.9

Q ss_pred             ccccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcC
Q 028808           31 AYASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKG  110 (203)
Q Consensus        31 ~~~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~g  110 (203)
                      +...+.+|++    +|+|++++.+|...+ ..+.+.+++++ ++||+ +|++||++|||+|..+ ++.|++++++   .+
T Consensus         4 ~~~~~~~g~~----~p~f~l~~~~g~~~~-~~~~~~~~l~~-~~gk~-~ll~f~~~~C~~C~~~-~~~l~~l~~~---~~   72 (156)
T 1kng_A            4 RIPSALIGRP----APQTALPPLEGLQAD-NVQVPGLDPAA-FKGKV-SLVNVWASWCVPCHDE-APLLTELGKD---KR   72 (156)
T ss_dssp             --------CB----CCCCCBCCCTTCEET-TEECCCBCGGG-GTTSC-EEEEEECTTCHHHHHH-HHHHHHHTTC---TT
T ss_pred             chhhHHhCCC----CCCceeeeccCcccc-cccCceechHH-hCCCE-EEEEEEcccCHhHHHH-HHHHHHHHhc---CC
Confidence            4456789999    699999998640000 00016799999 48884 5678999999999999 8999988765   34


Q ss_pred             CcEEEEEecC-CHHHHHHHHHHhCCCCceE-EEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808          111 IDSVICVAVN-DPYVMNGWAEKLQAKDVIE-FYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       111 v~~vi~IS~d-~~~~~~~~~~~~~l~~~fp-llsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~  186 (203)
                      +. +++|+.+ ++...++|.++++++  || ++.|.+.++++.||+..           .|++|||| +|+|++.+.+.
T Consensus        73 v~-~v~v~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~v~~-----------~P~~~~id~~G~i~~~~~g~  137 (156)
T 1kng_A           73 FQ-LVGINYKDAADNARRFLGRYGNP--FGRVGVDANGRASIEWGVYG-----------VPETFVVGREGTIVYKLVGP  137 (156)
T ss_dssp             SE-EEEEEESCCHHHHHHHHHHHCCC--CSEEEEETTSHHHHHTTCCS-----------SCEEEEECTTSBEEEEEESC
T ss_pred             eE-EEEEECCCCHHHHHHHHHHcCCC--CceeeeCchhHHHHhcCcCc-----------cCeEEEEcCCCCEEEEEeCC
Confidence            88 9999976 467899999999996  88 89999999999999853           47799999 99999988764

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=99.82  E-value=9.2e-22  Score=154.19  Aligned_cols=132  Identities=16%  Similarity=0.201  Sum_probs=101.9

Q ss_pred             cccccccccccccCCCccccCCCce-EEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHh
Q 028808           24 RIPTSSRAYASVAVGSDIVSAAQDV-SLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNN  102 (203)
Q Consensus        24 ~~~~~~~~~~~~~~G~~~~~~APdf-~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~  102 (203)
                      +-+++.....+..+|++    +|+| ++.+.+|          .++|++ ++|| +||++||++|||+|..+ +|.|+++
T Consensus        11 ~~~~~~~~~~~~~vG~~----~P~f~~l~~~~g----------~v~l~~-~~gk-~vll~F~a~wC~~C~~~-~p~l~~l   73 (165)
T 3s9f_A           11 SSGLVPRGSHMSGVAKH----LGEALKLRKQAD----------TADMDS-LSGK-TVFFYFSASWCPPCRGF-TPQLVEF   73 (165)
T ss_dssp             -----------CHHHHH----HHHTSCEEETTE----------EECSGG-GTTS-EEEEEEECTTCHHHHHH-HHHHHHH
T ss_pred             cCCccccchhhhhhccc----CCcceeeecCCC----------cccHHH-cCCC-EEEEEEECCcChhHHHH-HHHHHHH
Confidence            34566777788889999    5999 9998763          799999 5998 67788999999999999 9999999


Q ss_pred             HHHHHH-cCCcEEEEEecCCH-HHHHHHHHHhCCCCceEEEeeCC-chHHHHcCCccccccccCCCCcceEEEEEe-C-C
Q 028808          103 IDKFKA-KGIDSVICVAVNDP-YVMNGWAEKLQAKDVIEFYGDFD-GSFHKSLDLGKDLSAALLGPRSERWSAYVE-D-G  177 (203)
Q Consensus       103 ~~~f~~-~gv~~vi~IS~d~~-~~~~~~~~~~~l~~~fpllsD~~-~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-d-G  177 (203)
                      +++|++ +++. |++|+.|+. ...++|.+++++. .+|+..+.. .++++.||+..           .|++|||| + |
T Consensus        74 ~~~~~~~~~v~-vv~v~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~v~~-----------~Pt~~lid~~~G  140 (165)
T 3s9f_A           74 YEKHHDSKNFE-IILASWDEEEDDFNAYYAKMPWL-SIPFANRNIVEALTKKYSVES-----------IPTLIGLNADTG  140 (165)
T ss_dssp             HHHHTTTTTEE-EEEEECCCSHHHHHHHHTTCSSE-ECCTTCHHHHHHHHHHTTCCS-----------SSEEEEEETTTC
T ss_pred             HHHhccCCCeE-EEEEecCCCHHHHHHHHHhCCCc-ccccCchhHHHHHHHHcCCCC-----------CCEEEEEeCCCC
Confidence            999986 6888 999999865 6788899888754 466665544 89999999853           57899999 8 9


Q ss_pred             EEEEEEee
Q 028808          178 RIKALNVE  185 (203)
Q Consensus       178 ~I~~~~~~  185 (203)
                      +|++.+..
T Consensus       141 ~iv~~~~~  148 (165)
T 3s9f_A          141 DTVTTRAR  148 (165)
T ss_dssp             CEEESCHH
T ss_pred             EEEecccH
Confidence            99998764

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=99.81  E-value=1.3e-20  Score=143.37  Aligned_cols=121  Identities=15%  Similarity=0.233  Sum_probs=100.9

Q ss_pred             cCCCccccCCCc-eEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHH-cCCcE
Q 028808           36 AVGSDIVSAAQD-VSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKA-KGIDS  113 (203)
Q Consensus        36 ~~G~~~~~~APd-f~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~-~gv~~  113 (203)
                      .+|+.    +|+ |++.+.+|          .++|++ ++|| +||++||++|||+|..+ +|.|++++++|++ .++. 
T Consensus         3 ~~~~~----~P~~f~l~~~~g----------~~~l~~-~~gk-~vll~F~a~wC~~C~~~-~p~l~~l~~~~~~~~~~~-   64 (146)
T 1o8x_A            3 GLDKY----LPGIEKLRRGDG----------EVEVKS-LAGK-LVFFYFSASWCPPARGF-TPQLIEFYDKFHESKNFE-   64 (146)
T ss_dssp             CGGGT----STTCCEEEETTE----------EEEGGG-GTTC-EEEEEEECTTCHHHHHH-HHHHHHHHHHHTTTTTEE-
T ss_pred             chHhh----CCCceEEEcCCC----------CCcHHH-hCCC-EEEEEEEccCCHHHHHH-HHHHHHHHHHhhhcCCeE-
Confidence            45777    699 99999862          799999 4998 57778999999999999 9999999999984 6888 


Q ss_pred             EEEEecCC-HHHHHHHHHHhCCCCceEEEe-eCCchHHHHcCCccccccccCCCCcceEEEEEe--CCEEEEEEeec
Q 028808          114 VICVAVND-PYVMNGWAEKLQAKDVIEFYG-DFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE--DGRIKALNVEE  186 (203)
Q Consensus       114 vi~IS~d~-~~~~~~~~~~~~l~~~fplls-D~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId--dG~I~~~~~~~  186 (203)
                      |++|+.|+ ....++|.++++.. +||++. |.+.++++.||+..           .|++||||  +|+|++.+...
T Consensus        65 vv~v~~d~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~-----------~Pt~~lid~~~G~i~~~~~~~  129 (146)
T 1o8x_A           65 VVFCTWDEEEDGFAGYFAKMPWL-AVPFAQSEAVQKLSKHFNVES-----------IPTLIGVDADSGDVVTTRARA  129 (146)
T ss_dssp             EEEEECCCSHHHHHHHHTTCSSE-ECCGGGHHHHHHHHHHTTCCS-----------SSEEEEEETTTCCEEESCHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHCCce-eeccchhhHHHHHHHHhCCCC-----------CCEEEEEECCCCeEEEecchh
Confidence            99999985 57788999998863 477766 67789999999852           47899999  89999987654

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=99.78  E-value=3.1e-20  Score=140.40  Aligned_cols=120  Identities=13%  Similarity=0.194  Sum_probs=98.6

Q ss_pred             cCCCccccCCCce-EEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHH-HcCCcE
Q 028808           36 AVGSDIVSAAQDV-SLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFK-AKGIDS  113 (203)
Q Consensus        36 ~~G~~~~~~APdf-~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~-~~gv~~  113 (203)
                      .+|+.    +|+| ++.+.+|          .++|++ ++|| ++|++||++|||+|..+ +|.|++++++++ +.++. 
T Consensus         3 ~~g~~----~p~~~~l~~~~g----------~~~l~~-~~gk-~vll~F~a~wC~~C~~~-~~~l~~l~~~~~~~~~~~-   64 (144)
T 1o73_A            3 GLAKY----LPGATNLLSKSG----------EVSLGS-LVGK-TVFLYFSASWCPPCRGF-TPVLAEFYEKHHVAKNFE-   64 (144)
T ss_dssp             GGGGT----SCTTCCBBCTTS----------CBCSGG-GTTC-EEEEEEECTTCHHHHHH-HHHHHHHHHHHTTTTTEE-
T ss_pred             chhhh----CccceEeecCCC----------cCcHHH-hCCC-EEEEEEECcCCHHHHHH-HHHHHHHHHHhccCCCEE-
Confidence            56777    6997 9988763          689999 4998 56778999999999999 999999999998 46888 


Q ss_pred             EEEEecCC-HHHHHHHHHHhCCCCceEEEe-eCCchHHHHcCCccccccccCCCCcceEEEEEe--CCEEEEEEee
Q 028808          114 VICVAVND-PYVMNGWAEKLQAKDVIEFYG-DFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE--DGRIKALNVE  185 (203)
Q Consensus       114 vi~IS~d~-~~~~~~~~~~~~l~~~fplls-D~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId--dG~I~~~~~~  185 (203)
                      |++|+.|+ ....++|.++++.. ++|+.. |.+.++++.||+..           .|++||||  +|+|++.+..
T Consensus        65 vv~i~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~-----------~Pt~~lid~~~G~i~~~~~~  128 (144)
T 1o73_A           65 VVLISWDENESDFHDYYGKMPWL-ALPFDQRSTVSELGKTFGVES-----------IPTLITINADTGAIIGTQAR  128 (144)
T ss_dssp             EEEEECCSSHHHHHHHHTTCSSE-ECCTTCHHHHHHHHHHHTCCS-----------SSEEEEEETTTCCEEESCHH
T ss_pred             EEEEeCCCCHHHHHHHHHhCCce-EeeccchhHHHHHHHHcCCCC-----------CCEEEEEECCCCeEEecchh
Confidence            99999986 46788898888753 466665 66788999999853           47899999  8999998754

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.32  E-value=4.2e-13  Score=99.27  Aligned_cols=78  Identities=6%  Similarity=0.035  Sum_probs=62.1

Q ss_pred             cCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHc
Q 028808           73 FKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSL  152 (203)
Q Consensus        73 ~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~y  152 (203)
                      .+|| ++|+.||++|||+|... .|.|.+++++++ .++. ++.|+.+                     .|.+.++++.|
T Consensus        24 ~~~k-~~lv~f~a~wC~~C~~~-~~~l~~~~~~~~-~~v~-~~~v~~~---------------------~d~~~~~~~~~   78 (126)
T 2l57_A           24 KEGI-PTIIMFKTDTCPYCVEM-QKELSYVSKERE-GKFN-IYYARLE---------------------EEKNIDLAYKY   78 (126)
T ss_dssp             CSSS-CEEEEEECSSCHHHHHH-HHHHHHHHHHSS-SSCE-EEEEETT---------------------SSHHHHHHHHT
T ss_pred             hCCC-cEEEEEECCCCccHHHH-HHHHHHHHHHhc-CCeE-EEEEeCC---------------------CCchHHHHHHc
Confidence            3666 56778999999999999 899999998886 5687 9999855                     23445678888


Q ss_pred             CCccccccccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808          153 DLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       153 Gv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~  186 (203)
                      |+..           .|+++++| +|++++...+.
T Consensus        79 ~v~~-----------~Pt~~~~~~~G~~~~~~~G~  102 (126)
T 2l57_A           79 DANI-----------VPTTVFLDKEGNKFYVHQGL  102 (126)
T ss_dssp             TCCS-----------SSEEEEECTTCCEEEEEESC
T ss_pred             CCcc-----------eeEEEEECCCCCEEEEecCC
Confidence            8752           47789999 99999987753

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.28  E-value=1.5e-13  Score=103.37  Aligned_cols=101  Identities=13%  Similarity=0.129  Sum_probs=69.9

Q ss_pred             cCCCccccCCCceE-EeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhH---HHhHHHHHHcCC
Q 028808           36 AVGSDIVSAAQDVS-LQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSY---KNNIDKFKAKGI  111 (203)
Q Consensus        36 ~~G~~~~~~APdf~-l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l---~~~~~~f~~~gv  111 (203)
                      ..|..    +|+|+ +.+.++         ....|++. +|| ++|+.||++|||+|... .+.+   .++.++++  ++
T Consensus         5 ~~~~~----~~~f~~~~~~~~---------~~~~l~~~-~~k-~vlv~F~a~wC~~C~~~-~~~~~~~~~l~~~~~--~~   66 (134)
T 2fwh_A            5 AQTQT----HLNFTQIKTVDE---------LNQALVEA-KGK-PVMLDLYADWCVACKEF-EKYTFSDPQVQKALA--DT   66 (134)
T ss_dssp             ---------CCCCEECCSHHH---------HHHHHHHH-TTS-CEEEEEECTTCHHHHHH-HHHTTTSHHHHHHTT--TS
T ss_pred             ccccc----CCCcEEecCHHH---------HHHHHHHh-cCC-cEEEEEECCCCHHHHHH-HHHhcCCHHHHHHhc--Cc
Confidence            44555    69998 544432         45677774 787 56778999999999987 7877   77777765  58


Q ss_pred             cEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEE--EEEee
Q 028808          112 DSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIK--ALNVE  185 (203)
Q Consensus       112 ~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~--~~~~~  185 (203)
                      . ++.|+.++.                   .|.+.+++++||+..           .|+++++| +|+++  +...|
T Consensus        67 ~-~~~vd~~~~-------------------~~~~~~l~~~~~v~~-----------~Pt~~~~d~~G~~v~~~~~~G  112 (134)
T 2fwh_A           67 V-LLQANVTAN-------------------DAQDVALLKHLNVLG-----------LPTILFFDGQGQEHPQARVTG  112 (134)
T ss_dssp             E-EEEEECTTC-------------------CHHHHHHHHHTTCCS-----------SSEEEEECTTSCBCGGGCBCS
T ss_pred             E-EEEEeCCCC-------------------cchHHHHHHHcCCCC-----------CCEEEEECCCCCEeeeeeeee
Confidence            7 999988652                   134566788888742           47889998 99997  55544

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.27  E-value=4.9e-13  Score=103.21  Aligned_cols=94  Identities=6%  Similarity=-0.020  Sum_probs=69.9

Q ss_pred             eeeecccccCCCeEEEEEee-CCCCCCCCccchhhH---HHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEE
Q 028808           65 ATTPIKDIFKGKKVVIFGLP-GAYTGVCSNQHVPSY---KNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEF  140 (203)
Q Consensus        65 ~~vsL~dl~~gk~vVL~~f~-~~~cp~C~~ehl~~l---~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpl  140 (203)
                      +.+++++ .+||+ ||+.|| ++|||+|..+ +|.+   .++.+.+ ..++. ++.|+.++..         +++  ++ 
T Consensus        38 ~~~~~a~-~~gk~-vlv~F~ga~wC~~C~~~-~p~l~~~~~~~~~~-~~~~~-~v~vd~~~~~---------~~~--~~-  100 (154)
T 2ju5_A           38 EALEHSK-QDHKP-IGLFFTGSDWCMWCIKM-QDQILQSSEFKHFA-GVHLH-MVEVDFPQKN---------HQP--EE-  100 (154)
T ss_dssp             HHHHHHH-HHCCC-EEEEEECTTTCHHHHHH-HHHTTTSHHHHHHH-HHHCE-EEEEECCSSC---------CCC--HH-
T ss_pred             HHHHHHH-hCCCe-EEEEEeCCCCCHhHHHH-HHHHhcCHHHHHHh-cCcEE-EEEecCcccc---------CCC--hh-
Confidence            6788888 48884 666788 9999999999 8998   5554444 34576 8888776532         343  44 


Q ss_pred             EeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecC
Q 028808          141 YGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEA  187 (203)
Q Consensus       141 lsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~  187 (203)
                      +.|.+.++++.||+..           .|+++|+| +|+|++.. +..
T Consensus       101 ~~~~~~~l~~~~~v~~-----------~Pt~~~~d~~G~~~~~~-G~~  136 (154)
T 2ju5_A          101 QRQKNQELKAQYKVTG-----------FPELVFIDAEGKQLARM-GFE  136 (154)
T ss_dssp             HHHHHHHHHHHTTCCS-----------SSEEEEECTTCCEEEEE-CCC
T ss_pred             hHhhHHHHHHHcCCCC-----------CCEEEEEcCCCCEEEEe-cCC
Confidence            3577788999999853           47899999 99999987 643

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.20  E-value=1.9e-11  Score=91.02  Aligned_cols=97  Identities=12%  Similarity=0.114  Sum_probs=70.0

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHH--HhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHH
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYK--NNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKS  151 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~--~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~  151 (203)
                      +|| +||+.||++||++|... .|.|.  ++.+++++ ++. ++.|+.++                    .|.+.++++.
T Consensus        28 ~~k-~vlv~f~a~wC~~C~~~-~~~l~~~~~~~~~~~-~~~-~~~vd~~~--------------------~~~~~~l~~~   83 (133)
T 3fk8_A           28 THK-PTLLVFGANWCTDCRAL-DKSLRNQKNTALIAK-HFE-VVKIDVGN--------------------FDRNLELSQA   83 (133)
T ss_dssp             HTC-CEEEEEECTTCHHHHHH-HHHHTSHHHHHHHHH-HCE-EEEEECTT--------------------TTSSHHHHHH
T ss_pred             cCC-cEEEEEcCCCCHHHHHH-HHHhCCHHHHHHhcC-CEE-EEEEeCCc--------------------ccchHHHHHH
Confidence            576 57778999999999999 89999  88888865 477 99998864                    2556778888


Q ss_pred             cCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCC---cccCCHHHHHhc
Q 028808          152 LDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSK---MKVSGGDVILGQ  202 (203)
Q Consensus       152 yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~---~~~~~a~~vL~~  202 (203)
                      ||+...        ...|+++++| +|++++...+.....   .+..+.+++|++
T Consensus        84 ~~v~~~--------~~~Pt~~~~d~~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~  130 (133)
T 3fk8_A           84 YGDPIQ--------DGIPAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFAK  130 (133)
T ss_dssp             TTCGGG--------GCSSEEEEECTTSCEEEECCSCTTTTGGGSCHHHHHHHHHH
T ss_pred             hCCccC--------CccceEEEECCCCCEEEEecCCcccccccCCHHHHHHHHHH
Confidence            888321        1358889998 999999987743221   233445555543

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.19  E-value=2.9e-11  Score=89.81  Aligned_cols=82  Identities=10%  Similarity=0.117  Sum_probs=62.7

Q ss_pred             eeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeC
Q 028808           65 ATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDF  144 (203)
Q Consensus        65 ~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~  144 (203)
                      +.++... .+|| ++|+.||++||++|... .|.++++++++++ ++. ++.|+.|                       .
T Consensus        33 ~~~~~~~-~~~k-~vlv~F~a~wC~~C~~~-~p~l~~~~~~~~~-~v~-~~~vd~d-----------------------~   84 (128)
T 3ul3_B           33 NIINGVN-MKNT-VIVLYFFAKWCQACTMQ-STEMDKLQKYYGK-RIY-LLKVDLD-----------------------K   84 (128)
T ss_dssp             SSSSBTT-SCCS-EEEEEEECTTCHHHHHH-HHHHHHHHHHHGG-GEE-EEEEEGG-----------------------G
T ss_pred             cHHHHHH-ccCC-EEEEEEECCCCHHHHHH-hHHHHHHHHHhcC-CeE-EEEEECC-----------------------C
Confidence            4456665 4777 67788999999999999 9999999999974 466 7777643                       3


Q ss_pred             CchHHHHcCCccccccccCCCCcceEEEEEeCCEEEEEEee
Q 028808          145 DGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVE  185 (203)
Q Consensus       145 ~~~v~~~yGv~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~  185 (203)
                      +.+++++||+..           .|+.+++++|+++..+.+
T Consensus        85 ~~~l~~~~~v~~-----------~Pt~~~~~~G~~~~~~~G  114 (128)
T 3ul3_B           85 NESLARKFSVKS-----------LPTIILLKNKTMLARKDH  114 (128)
T ss_dssp             CHHHHHHTTCCS-----------SSEEEEEETTEEEEEESS
T ss_pred             CHHHHHHcCCCC-----------cCEEEEEECCEEEEEecC
Confidence            346788888753           477777789999988765

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.12  E-value=1.1e-10  Score=87.45  Aligned_cols=93  Identities=13%  Similarity=0.193  Sum_probs=67.0

Q ss_pred             eeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeC
Q 028808           65 ATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDF  144 (203)
Q Consensus        65 ~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~  144 (203)
                      ...+|++ ++|+ ++|+.||++|||+|... .|.|.++++++.+ .+. ++.|..|.                       
T Consensus        42 ~~~~l~~-~~~k-~vlv~f~a~wC~~C~~~-~~~~~~~~~~~~~-~~~-~~~v~~~~-----------------------   93 (141)
T 3hxs_A           42 HSKEWKY-LGDK-PAIVDFYADWCGPCKMV-APILEELSKEYAG-KIY-IYKVNVDK-----------------------   93 (141)
T ss_dssp             CCCCCCC-CCSS-CEEEEEECTTCTTHHHH-HHHHHHHHHHTTT-TCE-EEEEETTT-----------------------
T ss_pred             chhHHHH-hCCC-EEEEEEECCCCHHHHHH-HHHHHHHHHHhcC-ceE-EEEEECCC-----------------------
Confidence            5677777 4777 56778999999999999 8999999998875 366 77776543                       


Q ss_pred             CchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCCcccCCHHHHHh
Q 028808          145 DGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSKMKVSGGDVILG  201 (203)
Q Consensus       145 ~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~~~~~~a~~vL~  201 (203)
                      +.++++.||+..           .|+.++++ +|+++ ...+.    .+..+..+.|+
T Consensus        94 ~~~~~~~~~v~~-----------~Pt~~~~~~~g~~~-~~~G~----~~~~~l~~~l~  135 (141)
T 3hxs_A           94 EPELARDFGIQS-----------IPTIWFVPMKGEPQ-VNMGA----LSKEQLKGYID  135 (141)
T ss_dssp             CHHHHHHTTCCS-----------SSEEEEECSSSCCE-EEESC----CCHHHHHHHHH
T ss_pred             CHHHHHHcCCCC-----------cCEEEEEeCCCCEE-EEeCC----CCHHHHHHHHH
Confidence            446788888753           47788888 99987 44432    23344444444

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.12  E-value=3.6e-10  Score=81.78  Aligned_cols=75  Identities=11%  Similarity=0.125  Sum_probs=59.7

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      +|+ .+|+.||++|||+|... .|.|.++++++++ ++. ++.|+.|.                       +.+++++||
T Consensus        16 ~~~-~~lv~f~a~wC~~C~~~-~~~l~~~~~~~~~-~v~-~~~vd~~~-----------------------~~~l~~~~~   68 (112)
T 2voc_A           16 SEG-VVLADFWAPWCGPSKMI-APVLEELDQEMGD-KLK-IVKIDVDE-----------------------NQETAGKYG   68 (112)
T ss_dssp             SSS-EEEEEEECTTBGGGGGH-HHHHHHHHHHHTT-TCE-EEEEETTT-----------------------CCSHHHHTT
T ss_pred             CCC-EEEEEEECCCCHHHHHH-HHHHHHHHHHhCC-CcE-EEEEECCC-----------------------CHHHHHHcC
Confidence            556 67778999999999999 8999999999875 577 88887653                       346888888


Q ss_pred             CccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          154 LGKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      +..           .|+.+++.+|++++.+.+.
T Consensus        69 v~~-----------~Pt~~~~~~G~~~~~~~G~   90 (112)
T 2voc_A           69 VMS-----------IPTLLVLKDGEVVETSVGF   90 (112)
T ss_dssp             CCS-----------BSEEEEEETTEEEEEEESC
T ss_pred             CCc-----------ccEEEEEeCCEEEEEEeCC
Confidence            853           4767777899999888764

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.07  E-value=6.1e-12  Score=97.98  Aligned_cols=107  Identities=8%  Similarity=0.075  Sum_probs=61.7

Q ss_pred             eeeecccccCCCeEEEEEeeCCCCCCCCccchhhH--HHhHHHHHHcCCcEEEEEecCCHHHHHHH--HHHhCCCCceEE
Q 028808           65 ATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSY--KNNIDKFKAKGIDSVICVAVNDPYVMNGW--AEKLQAKDVIEF  140 (203)
Q Consensus        65 ~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l--~~~~~~f~~~gv~~vi~IS~d~~~~~~~~--~~~~~l~~~fpl  140 (203)
                      +.+.++. .+|| +||++||++||++|...+.+.|  .++.+.+++ ++. ++.|+.|+.......  ....+....+..
T Consensus        38 ~~~~~a~-~~gk-~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~-~~~-~v~v~~d~~~~~~~~~~~~~~~~~~~~~~  113 (172)
T 3f9u_A           38 LGMEYAR-QHNK-PVMLDFTGYGCVNCRKMELAVWTDPKVSSIINN-DYV-LITLYVDNKTPLTEPVKIMENGTERTLRT  113 (172)
T ss_dssp             HHHHHHH-HTTC-CEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHH-HCE-EEEEETTCCCEEEEEEEEEETTEEEEEEE
T ss_pred             HHHHHHH-HcCC-eEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC-CEE-EEEEecCcccccchhhhhhhcchhhhhhh
Confidence            3455555 3787 6788999999999987312222  444444444 587 999998763211000  000000001222


Q ss_pred             EeeCCchH-HHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808          141 YGDFDGSF-HKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       141 lsD~~~~v-~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~  186 (203)
                      +.|....+ ++.||+.           ..|+++|+| +|+|++.+.+.
T Consensus       114 ~~~~~~~~~~~~~~v~-----------~~Pt~~lid~~G~~~~~~~G~  150 (172)
T 3f9u_A          114 VGDKWSYLQRVKFGAN-----------AQPFYVLIDNEGNPLNKSYAY  150 (172)
T ss_dssp             HHHHHHHHHHHHHSCC-----------CSSEEEEECTTSCBSSCCBCS
T ss_pred             hhhhhhHHHHHHcCCC-----------CcceEEEECCCCCEEeeccCC
Confidence            22322333 5778775           358899999 99999987753

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.00  E-value=1e-10  Score=86.46  Aligned_cols=85  Identities=9%  Similarity=0.101  Sum_probs=59.7

Q ss_pred             eeeecccccCCCeEEEEEeeCCCCCCCCccchhhH---HHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEE
Q 028808           65 ATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSY---KNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFY  141 (203)
Q Consensus        65 ~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l---~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpll  141 (203)
                      +.+++++ .+|| ++|+.||++|||+|... .|.+   .++.+.++ .++. ++.|..+.                    
T Consensus        18 ~~~~~~~-~~~k-~vlv~f~a~wC~~C~~~-~~~~~~~~~~~~~~~-~~~~-~~~vd~~~--------------------   72 (130)
T 2kuc_A           18 EALKRAE-VEDK-LLFVDCFTTWCGPCKRL-SKVVFKDSLVADYFN-RHFV-NLKMDMEK--------------------   72 (130)
T ss_dssp             HHHHHHH-HHSS-CEEEEECCTTCTHHHHH-HHHGGGCHHHHHHHH-HHSE-EEEECSSS--------------------
T ss_pred             HHHHHHH-hcCC-eEEEEEECCCCccHHHH-HHHhcCcHHHHHHHh-cCeE-EEEEecCC--------------------
Confidence            4566665 3677 56778999999999998 8888   44444443 3455 66666553                    


Q ss_pred             eeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808          142 GDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       142 sD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~  186 (203)
                       |.+..++++||+..           .|+++++| +|++++...+.
T Consensus        73 -~~~~~~~~~~~v~~-----------~Pt~~~~d~~G~~~~~~~G~  106 (130)
T 2kuc_A           73 -GEGVELRKKYGVHA-----------YPTLLFINSSGEVVYRLVGA  106 (130)
T ss_dssp             -TTHHHHHHHTTCCS-----------SCEEEEECTTSCEEEEEESC
T ss_pred             -cchHHHHHHcCCCC-----------CCEEEEECCCCcEEEEecCC
Confidence             34567788888752           47789998 99999987653

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.00  E-value=2e-10  Score=83.06  Aligned_cols=74  Identities=15%  Similarity=0.219  Sum_probs=57.1

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      +|| ++|+.||++|||+|... .|.+++++++++  ++. ++.|..|                       .+.+++++||
T Consensus        23 ~~k-~vlv~f~a~wC~~C~~~-~p~l~~l~~~~~--~~~-~~~vd~~-----------------------~~~~l~~~~~   74 (109)
T 3f3q_A           23 QDK-LVVVDFYATWCGPCKMI-APMIEKFSEQYP--QAD-FYKLDVD-----------------------ELGDVAQKNE   74 (109)
T ss_dssp             SSS-CEEEEEECTTCHHHHHH-HHHHHHHHHHCT--TSE-EEEEETT-----------------------TCHHHHHHTT
T ss_pred             cCC-EEEEEEECCcCHhHHHH-HHHHHHHHHHCC--CCE-EEEEECC-----------------------CCHHHHHHcC
Confidence            355 67888999999999999 899999988875  466 7777664                       3456788888


Q ss_pred             CccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          154 LGKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      +..           .|+.+++++|+++....+.
T Consensus        75 v~~-----------~Pt~~~~~~G~~~~~~~G~   96 (109)
T 3f3q_A           75 VSA-----------MPTLLLFKNGKEVAKVVGA   96 (109)
T ss_dssp             CCS-----------SSEEEEEETTEEEEEEESS
T ss_pred             CCc-----------cCEEEEEECCEEEEEEeCC
Confidence            753           4666666799999988764

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.00  E-value=8.5e-10  Score=78.03  Aligned_cols=86  Identities=14%  Similarity=0.146  Sum_probs=62.5

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      +++ .+++.||++|||+|... .|.+++++++++++ +. ++.|+.|.                       +.+++++||
T Consensus        18 ~~~-~~lv~f~~~~C~~C~~~-~~~~~~~~~~~~~~-~~-~~~v~~~~-----------------------~~~~~~~~~   70 (106)
T 3die_A           18 ESG-VQLVDFWATACGPCKMI-APVLEELAADYEGK-AD-ILKLDVDE-----------------------NPSTAAKYE   70 (106)
T ss_dssp             CSS-EEEEEEECSBCHHHHHH-HHHHHHHHHHTTTT-CE-EEEEETTT-----------------------CHHHHHHTT
T ss_pred             cCC-cEEEEEECCCCHHHHHH-hHHHHHHHHHhcCC-cE-EEEEECCc-----------------------CHHHHHhCC
Confidence            555 67778999999999999 89999999998764 77 88887643                       345777787


Q ss_pred             CccccccccCCCCcceEEEEEeCCEEEEEEeecCCCCcccCCHHHHHh
Q 028808          154 LGKDLSAALLGPRSERWSAYVEDGRIKALNVEEAPSKMKVSGGDVILG  201 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~~~~~~~~~~a~~vL~  201 (203)
                      +..           .|+.+++++|+++....+..    +.++..+.|+
T Consensus        71 v~~-----------~Pt~~~~~~G~~~~~~~g~~----~~~~l~~~l~  103 (106)
T 3die_A           71 VMS-----------IPTLIVFKDGQPVDKVVGFQ----PKENLAEVLD  103 (106)
T ss_dssp             CCS-----------BSEEEEEETTEEEEEEESCC----CHHHHHHHHH
T ss_pred             Ccc-----------cCEEEEEeCCeEEEEEeCCC----CHHHHHHHHH
Confidence            753           46666667999998876532    2344444444

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=98.99  E-value=7.4e-10  Score=78.46  Aligned_cols=75  Identities=13%  Similarity=0.155  Sum_probs=57.6

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      .|+ .+++.||++|||+|... .|.++++.+++++. +. ++.|+.|.                       +.+++++||
T Consensus        16 ~~~-~~~v~f~~~~C~~C~~~-~~~l~~~~~~~~~~-v~-~~~v~~~~-----------------------~~~~~~~~~   68 (105)
T 1nsw_A           16 GDG-PVLVDFWAAWCGPCRMM-APVLEEFAEAHADK-VT-VAKLNVDE-----------------------NPETTSQFG   68 (105)
T ss_dssp             SSS-CEEEEEECTTCHHHHHH-HHHHHHHHHHSTTT-CE-EEEEETTT-----------------------CHHHHHHTT
T ss_pred             CCC-cEEEEEECCCCHHHHHH-HHHHHHHHHHhcCC-cE-EEEEECcC-----------------------CHHHHHHcC
Confidence            355 67778999999999999 89999998888653 77 88887653                       345777888


Q ss_pred             CccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          154 LGKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      +..           .|+.+++.+|++++.+.+.
T Consensus        69 v~~-----------~Pt~~~~~~G~~~~~~~G~   90 (105)
T 1nsw_A           69 IMS-----------IPTLILFKGGRPVKQLIGY   90 (105)
T ss_dssp             CCS-----------SSEEEEEETTEEEEEEESC
T ss_pred             Ccc-----------ccEEEEEeCCeEEEEEecC
Confidence            753           4667777899999887653

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=98.97  E-value=1.7e-09  Score=77.52  Aligned_cols=75  Identities=15%  Similarity=0.250  Sum_probs=56.3

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      .|+ ++++.||++|||+|... .|.|.++++++++. +. ++.|+.|.                       +.+++++||
T Consensus        22 ~~~-~~vv~f~~~~C~~C~~~-~~~l~~~~~~~~~~-~~-~~~v~~~~-----------------------~~~~~~~~~   74 (112)
T 1t00_A           22 NDK-PVLVDFWAAWCGPCRQI-APSLEAIAAEYGDK-IE-IVKLNIDE-----------------------NPGTAAKYG   74 (112)
T ss_dssp             CSS-CEEEEEECTTCHHHHHH-HHHHHHHHHHTTTT-CE-EEEEETTT-----------------------CHHHHHHTT
T ss_pred             CCC-eEEEEEECCCCHhHHhc-CHHHHHHHHHhcCC-eE-EEEEEcCC-----------------------CHHHHHhCC
Confidence            355 57778999999999999 89999999888653 77 88887654                       346778888


Q ss_pred             CccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          154 LGKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      +..           .|+.+++.+|++++...+.
T Consensus        75 v~~-----------~Pt~~~~~~G~~~~~~~G~   96 (112)
T 1t00_A           75 VMS-----------IPTLNVYQGGEVAKTIVGA   96 (112)
T ss_dssp             CCS-----------SSEEEEEETTEEEEEEESC
T ss_pred             CCc-----------ccEEEEEeCCEEEEEEeCC
Confidence            753           3544444599999887754

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=98.97  E-value=5.1e-10  Score=79.94  Aligned_cols=74  Identities=9%  Similarity=0.116  Sum_probs=49.8

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      +++ .+++.||++|||+|... .|.++++++++.  ++. ++.|+.|.                       +.+++++||
T Consensus        17 ~~~-~vlv~f~a~wC~~C~~~-~p~~~~~~~~~~--~~~-~~~vd~~~-----------------------~~~l~~~~~   68 (105)
T 4euy_A           17 EQQ-LVLLFIKTENCGVCDVM-LRKVNYVLENYN--YVE-KIEILLQD-----------------------MQEIAGRYA   68 (105)
T ss_dssp             CSS-EEEEEEEESSCHHHHHH-HHHHHHHHHTCT--TEE-EEEEEECC-----------------------C--------
T ss_pred             cCC-CEEEEEeCCCCcchHHH-HHHHHHHHHHcC--Cce-EEEEECCC-----------------------CHHHHHhcC
Confidence            344 68889999999999999 899999888873  466 77776643                       235667777


Q ss_pred             CccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          154 LGKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      +..           .|+.+++++|+++....+.
T Consensus        69 v~~-----------~Pt~~~~~~G~~~~~~~g~   90 (105)
T 4euy_A           69 VFT-----------GPTVLLFYNGKEILRESRF   90 (105)
T ss_dssp             -CC-----------CCEEEEEETTEEEEEEESS
T ss_pred             CCC-----------CCEEEEEeCCeEEEEEeCC
Confidence            742           4666777899999887653

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=98.96  E-value=1.4e-09  Score=78.16  Aligned_cols=75  Identities=5%  Similarity=0.208  Sum_probs=56.3

Q ss_pred             CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCC
Q 028808           75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDL  154 (203)
Q Consensus        75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv  154 (203)
                      |+ ++++.||++|||+|... .|.|.+++++++..++. ++.|+.+.                       +.++++.||+
T Consensus        21 ~~-~~~v~f~a~wC~~C~~~-~~~~~~~~~~~~~~~~~-~~~vd~~~-----------------------~~~~~~~~~v   74 (112)
T 3d6i_A           21 DK-LIVLYFHTSWAEPCKAL-KQVFEAISNEPSNSNVS-FLSIDADE-----------------------NSEISELFEI   74 (112)
T ss_dssp             TC-CEEEEEECCC--CHHHH-HHHHHHHHHCGGGTTSE-EEEEETTT-----------------------CHHHHHHTTC
T ss_pred             CC-EEEEEEECCCCHHHHHH-HHHHHHHHHhcCCCCEE-EEEEeccc-----------------------CHHHHHHcCC
Confidence            55 67788999999999999 89999998887656787 88888764                       2367888887


Q ss_pred             ccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          155 GKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       155 ~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      ..           .|+.+++.+|+++....+.
T Consensus        75 ~~-----------~Pt~~~~~~G~~~~~~~G~   95 (112)
T 3d6i_A           75 SA-----------VPYFIIIHKGTILKELSGA   95 (112)
T ss_dssp             CS-----------SSEEEEEETTEEEEEECSC
T ss_pred             Cc-----------ccEEEEEECCEEEEEecCC
Confidence            53           4655555699999987764

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=98.93  E-value=9.1e-10  Score=78.28  Aligned_cols=75  Identities=9%  Similarity=0.166  Sum_probs=56.1

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      .|+ .+++.||++|||+|... .|.|.++++++++. +. ++.|+.|.                       +.+++++||
T Consensus        18 ~~~-~~lv~f~~~~C~~C~~~-~~~l~~~~~~~~~~-~~-~~~v~~~~-----------------------~~~~~~~~~   70 (107)
T 1dby_A           18 SSV-PVLVDFWAPWCGPCRII-APVVDEIAGEYKDK-LK-CVKLNTDE-----------------------SPNVASEYG   70 (107)
T ss_dssp             CSS-CEEEEEECTTCHHHHHH-HHHHHHHHHHTTTT-CE-EEEEETTT-----------------------CHHHHHHHT
T ss_pred             CCC-cEEEEEECCCCHhHHHH-HHHHHHHHHHhCCc-eE-EEEEECCC-----------------------CHHHHHHCC
Confidence            355 57778999999999999 89999998888653 77 88887653                       346778888


Q ss_pred             CccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          154 LGKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      +..           .|+.+++.+|++++...+.
T Consensus        71 v~~-----------~Pt~~~~~~G~~~~~~~G~   92 (107)
T 1dby_A           71 IRS-----------IPTIMVFKGGKKCETIIGA   92 (107)
T ss_dssp             CCS-----------SCEEEEESSSSEEEEEESC
T ss_pred             CCc-----------CCEEEEEeCCEEEEEEeCC
Confidence            753           3554444599999887764

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=98.93  E-value=1e-09  Score=80.68  Aligned_cols=76  Identities=14%  Similarity=0.237  Sum_probs=58.5

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      +++ .+|+.||++|||.|... .|.|++++++++++++. ++.|+.|.                       +.++++.||
T Consensus        32 ~~k-~vvv~f~a~~C~~C~~~-~~~l~~l~~~~~~~~v~-~~~vd~d~-----------------------~~~~~~~~~   85 (121)
T 2j23_A           32 GDK-VVVIDFWATWCGPCKMI-GPVFEKISDTPAGDKVG-FYKVDVDE-----------------------QSQIAQEVG   85 (121)
T ss_dssp             SSS-CEEEEEECTTCSTHHHH-HHHHHHHHTSTHHHHSE-EEEEETTT-----------------------CHHHHHHHT
T ss_pred             CCC-EEEEEEECCCCHhHHHH-HHHHHHHHHHCcCCcEE-EEEEECcC-----------------------CHHHHHHcC
Confidence            355 57778999999999999 89999999888877787 88887754                       346777888


Q ss_pred             CccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          154 LGKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      +..           .|+.+++++|+++....+.
T Consensus        86 v~~-----------~Pt~~~~~~G~~~~~~~G~  107 (121)
T 2j23_A           86 IRA-----------MPTFVFFKNGQKIDTVVGA  107 (121)
T ss_dssp             CCS-----------SSEEEEEETTEEEEEEESS
T ss_pred             CCc-----------ccEEEEEECCeEEeeEcCC
Confidence            753           3655555699999887653

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=98.92  E-value=4.9e-10  Score=81.91  Aligned_cols=74  Identities=12%  Similarity=0.180  Sum_probs=56.5

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      +|| ++|+.||++||++|... .|.|+++++++++  +. ++.|..|.                       +.++++.||
T Consensus        30 ~~k-~vlv~F~a~wC~~C~~~-~p~l~~l~~~~~~--v~-~~~vd~d~-----------------------~~~l~~~~~   81 (116)
T 3qfa_C           30 GDK-LVVVDFSATWCGPSKMI-KPFFHSLSEKYSN--VI-FLEVDVDD-----------------------CQDVASECE   81 (116)
T ss_dssp             TTS-CEEEEEECTTCHHHHHH-HHHHHHHHTTCTT--SE-EEEEETTT-----------------------THHHHHHTT
T ss_pred             CCC-EEEEEEECCCCHHHHHH-HHHHHHHHHHCCC--CE-EEEEECCC-----------------------CHHHHHHcC
Confidence            566 67788999999999999 8999998888754  77 88887753                       346778888


Q ss_pred             CccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          154 LGKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      +..           .|+.+++.+|+++....+.
T Consensus        82 v~~-----------~Pt~~~~~~G~~~~~~~G~  103 (116)
T 3qfa_C           82 VKS-----------MPTFQFFKKGQKVGEFSGA  103 (116)
T ss_dssp             CCS-----------SSEEEEESSSSEEEEEESC
T ss_pred             Ccc-----------ccEEEEEeCCeEEEEEcCC
Confidence            753           3655555699998887653

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=98.92  E-value=1.3e-09  Score=78.29  Aligned_cols=74  Identities=11%  Similarity=0.166  Sum_probs=57.7

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      +|+ .+|+.||++|||+|... .|.|.+++++++  ++. ++.|..++                      .+.+++++||
T Consensus        23 ~~~-~vlv~f~a~wC~~C~~~-~~~l~~~~~~~~--~v~-~~~vd~~~----------------------~~~~~~~~~~   75 (111)
T 2pu9_C           23 GDK-PVVLDMFTQWCGPSKAM-APKYEKLAEEYL--DVI-FLKLDCNQ----------------------ENKTLAKELG   75 (111)
T ss_dssp             TTS-CEEEEEECTTCHHHHHH-HHHHHHHHHHCT--TSE-EEEEECSS----------------------TTHHHHHHHC
T ss_pred             CCC-EEEEEEECCcCHhHHHH-CHHHHHHHHHCC--CeE-EEEEecCc----------------------chHHHHHHcC
Confidence            466 56778999999999999 899999988875  477 88888763                      2457888888


Q ss_pred             CccccccccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808          154 LGKDLSAALLGPRSERWSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~  186 (203)
                      +..           .|+ |+++ +|+++....+.
T Consensus        76 v~~-----------~Pt-~~~~~~G~~~~~~~G~   97 (111)
T 2pu9_C           76 IRV-----------VPT-FKILKENSVVGEVTGA   97 (111)
T ss_dssp             CSB-----------SSE-EEEESSSSEEEEEESS
T ss_pred             CCe-----------eeE-EEEEeCCcEEEEEcCC
Confidence            753           364 7777 99999887653

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=98.92  E-value=3e-09  Score=76.22  Aligned_cols=75  Identities=11%  Similarity=0.147  Sum_probs=57.9

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      .++ .+|+.|+++|||.|... .|.|+++.++++++ +. ++.|+.+.                       +.+++++||
T Consensus        24 ~~~-~~lv~f~~~~C~~C~~~-~~~l~~~~~~~~~~-v~-~~~v~~~~-----------------------~~~~~~~~~   76 (115)
T 1thx_A           24 AEQ-PVLVYFWASWCGPCQLM-SPLINLAANTYSDR-LK-VVKLEIDP-----------------------NPTTVKKYK   76 (115)
T ss_dssp             CSS-CEEEEEECTTCTTHHHH-HHHHHHHHHHTTTT-CE-EEEEESTT-----------------------CHHHHHHTT
T ss_pred             CCc-eEEEEEECCCCHHHHHh-HHHHHHHHHHhCCc-EE-EEEEEcCC-----------------------CHHHHHHcC
Confidence            455 57778999999999999 89999998888754 77 88888654                       235778888


Q ss_pred             CccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          154 LGKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      +..           .|+.+++.+|++++...+.
T Consensus        77 v~~-----------~Pt~~~~~~G~~~~~~~g~   98 (115)
T 1thx_A           77 VEG-----------VPALRLVKGEQILDSTEGV   98 (115)
T ss_dssp             CCS-----------SSEEEEEETTEEEEEEESC
T ss_pred             CCc-----------eeEEEEEcCCEEEEEecCC
Confidence            753           4666666799999887653

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=98.91  E-value=1e-09  Score=84.70  Aligned_cols=75  Identities=8%  Similarity=0.143  Sum_probs=58.4

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      .++ .+|+.||++||++|... .|.|++++++++.+ +. ++.|+.|.                       +.+++++||
T Consensus        63 ~~~-~vlv~F~a~wC~~C~~~-~p~l~~la~~~~~~-v~-~~~vd~~~-----------------------~~~l~~~~~  115 (155)
T 2ppt_A           63 DDL-PLLVDFWAPWCGPCRQM-APQFQAAAATLAGQ-VR-LAKIDTQA-----------------------HPAVAGRHR  115 (155)
T ss_dssp             CSS-CEEEEEECTTCHHHHHH-HHHHHHHHHHHTTT-CE-EEEEETTT-----------------------STHHHHHTT
T ss_pred             CCC-cEEEEEECCCCHHHHHH-HHHHHHHHHHccCC-EE-EEEEeCCc-----------------------cHHHHHHcC
Confidence            355 67778999999999999 89999999999754 77 88887753                       346788888


Q ss_pred             CccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          154 LGKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      +..           .|+.+++.+|+++....+.
T Consensus       116 i~~-----------~Pt~~~~~~G~~~~~~~G~  137 (155)
T 2ppt_A          116 IQG-----------IPAFILFHKGRELARAAGA  137 (155)
T ss_dssp             CCS-----------SSEEEEEETTEEEEEEESC
T ss_pred             CCc-----------CCEEEEEeCCeEEEEecCC
Confidence            853           4666666799999887653

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.91  E-value=4.2e-09  Score=77.63  Aligned_cols=74  Identities=11%  Similarity=0.136  Sum_probs=57.2

Q ss_pred             CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHH---cCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHH
Q 028808           75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKA---KGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKS  151 (203)
Q Consensus        75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~---~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~  151 (203)
                      ++ ++|+.||++||++|... .|.|.++++++++   .++. ++.|..+.                       +.++++.
T Consensus        25 ~~-~~lv~f~a~wC~~C~~~-~~~~~~~~~~~~~~~~~~~~-~~~vd~~~-----------------------~~~l~~~   78 (133)
T 1x5d_A           25 ED-VWMVEFYAPWCGHCKNL-EPEWAAAASEVKEQTKGKVK-LAAVDATV-----------------------NQVLASR   78 (133)
T ss_dssp             SS-EEEEEEECTTCHHHHTH-HHHHHHHHHHHHHHTTTSEE-EEEEETTT-----------------------CCHHHHH
T ss_pred             CC-eEEEEEECCCCHHHHhh-cHHHHHHHHHHHhhcCCcEE-EEEEECCC-----------------------CHHHHHh
Confidence            44 67888999999999999 8999999999973   3465 77776542                       3578888


Q ss_pred             cCCccccccccCCCCcceEEEEEeCCEEEEEEee
Q 028808          152 LDLGKDLSAALLGPRSERWSAYVEDGRIKALNVE  185 (203)
Q Consensus       152 yGv~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~  185 (203)
                      |++..           .|+.+++++|+++..+.+
T Consensus        79 ~~v~~-----------~Pt~~~~~~g~~~~~~~G  101 (133)
T 1x5d_A           79 YGIRG-----------FPTIKIFQKGESPVDYDG  101 (133)
T ss_dssp             HTCCS-----------SSEEEEEETTEEEEEECS
T ss_pred             CCCCe-----------eCeEEEEeCCCceEEecC
Confidence            88853           477888888988777654

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=98.91  E-value=1.8e-09  Score=80.02  Aligned_cols=72  Identities=14%  Similarity=0.207  Sum_probs=55.4

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      +|+ ++|+.||++|||+|... .|.|+++++++.  ++. ++.|+.|.                       +.+++++||
T Consensus        37 ~~k-~vvv~f~a~wC~~C~~~-~~~l~~l~~~~~--~v~-~~~vd~d~-----------------------~~~l~~~~~   88 (124)
T 1xfl_A           37 SKT-LVVVDFTASWCGPCRFI-APFFADLAKKLP--NVL-FLKVDTDE-----------------------LKSVASDWA   88 (124)
T ss_dssp             TTC-EEEEEEECTTCHHHHHH-HHHHHHHHHHCS--SEE-EEEEETTT-----------------------SHHHHHHTT
T ss_pred             cCC-EEEEEEECCCCHHHHHH-HHHHHHHHHHCC--CcE-EEEEECcc-----------------------CHHHHHHcC
Confidence            566 67788999999999999 899999888875  576 77777642                       456788888


Q ss_pred             CccccccccCCCCcceEEEEEe-CCEEEEEEee
Q 028808          154 LGKDLSAALLGPRSERWSAYVE-DGRIKALNVE  185 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~  185 (203)
                      +..           .|+ |++. +|+++....+
T Consensus        89 v~~-----------~Pt-~~~~~~G~~~~~~~G  109 (124)
T 1xfl_A           89 IQA-----------MPT-FMFLKEGKILDKVVG  109 (124)
T ss_dssp             CCS-----------SSE-EEEEETTEEEEEEES
T ss_pred             CCc-----------cCE-EEEEECCEEEEEEeC
Confidence            853           354 5555 9999998775

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=98.91  E-value=8.7e-10  Score=82.66  Aligned_cols=67  Identities=12%  Similarity=0.261  Sum_probs=53.2

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK  156 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~  156 (203)
                      +++|+.||++|||+|... .|.|.++++++++ ++. ++.|..|.                       +.++++.||+..
T Consensus        39 k~~lv~f~a~wC~~C~~~-~~~l~~l~~~~~~-~v~-~~~vd~~~-----------------------~~~l~~~~~v~~   92 (136)
T 2l5l_A           39 KPAIVDFYADWCGPCKMV-APILDELAKEYDG-QIV-IYKVDTEK-----------------------EQELAGAFGIRS   92 (136)
T ss_dssp             SCEEEEEECTTSHHHHHH-HHHHHHHHHHTTT-TCE-EEEEETTT-----------------------CHHHHHHTTCCS
T ss_pred             CEEEEEEECCcCHHHHHH-HHHHHHHHHHhcC-CEE-EEEEeCCC-----------------------CHHHHHHcCCCC
Confidence            367788999999999999 8999999988864 377 88887653                       346778888743


Q ss_pred             ccccccCCCCcceEEEEEe-CCEEE
Q 028808          157 DLSAALLGPRSERWSAYVE-DGRIK  180 (203)
Q Consensus       157 ~~~~~g~~~~~~r~tfIId-dG~I~  180 (203)
                                 .|+.+++| +|+++
T Consensus        93 -----------~Pt~~~~~~~G~~~  106 (136)
T 2l5l_A           93 -----------IPSILFIPMEGKPE  106 (136)
T ss_dssp             -----------SCEEEEECSSSCCE
T ss_pred             -----------CCEEEEECCCCcEE
Confidence                       47788888 99987

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=98.91  E-value=9.6e-10  Score=83.36  Aligned_cols=94  Identities=10%  Similarity=0.123  Sum_probs=65.7

Q ss_pred             CCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHH
Q 028808           45 AQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYV  124 (203)
Q Consensus        45 APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~  124 (203)
                      +|++.+.+.++         +.+...- .+++ .+|+.||++||++|... .|.|++++++++.. +. ++.|+.|.   
T Consensus        35 ~~~~~v~~l~~---------~~~~~~~-~~~k-~vlv~F~a~wC~~C~~~-~p~l~~~~~~~~~~-~~-~~~vd~~~---   97 (148)
T 3p2a_A           35 LFDGEVINATA---------ETLDKLL-QDDL-PMVIDFWAPWCGPCRSF-APIFAETAAERAGK-VR-FVKVNTEA---   97 (148)
T ss_dssp             TTCCCCEECCT---------TTHHHHT-TCSS-CEEEEEECSSCHHHHHH-HHHHHHHHHHTTTT-CE-EEEEETTT---
T ss_pred             cccCCceecCH---------HHHHHHH-hcCC-cEEEEEECCCCHHHHHH-HHHHHHHHHHcCCc-eE-EEEEECcC---
Confidence            36766666653         2232221 2455 67788999999999999 89999999988653 76 88887653   


Q ss_pred             HHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          125 MNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       125 ~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                                          +.++++.||+..           .|+.+++++|+++..+.+.
T Consensus        98 --------------------~~~l~~~~~v~~-----------~Pt~~~~~~G~~~~~~~G~  128 (148)
T 3p2a_A           98 --------------------EPALSTRFRIRS-----------IPTIMLYRNGKMIDMLNGA  128 (148)
T ss_dssp             --------------------CHHHHHHTTCCS-----------SSEEEEEETTEEEEEESSC
T ss_pred             --------------------CHHHHHHCCCCc-----------cCEEEEEECCeEEEEEeCC
Confidence                                346777888753           4655566799999877653

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.91  E-value=4.7e-09  Score=87.76  Aligned_cols=75  Identities=8%  Similarity=0.042  Sum_probs=59.2

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      +|| +||+.||++||++|... .|.|.++++++++ .+. ++.|+.|.                       +.++++.||
T Consensus        25 ~~~-~v~v~f~a~wC~~C~~~-~p~~~~~~~~~~~-~~~-~~~vd~~~-----------------------~~~~~~~~~   77 (287)
T 3qou_A           25 MTT-PVLFYFWSERSQHCLQL-TPILESLAAQYNG-QFI-LAKLDCDA-----------------------EQMIAAQFG   77 (287)
T ss_dssp             TTS-CEEEEEECTTCTTTTTT-HHHHHHHHHHHTS-SSE-EEEEETTT-----------------------CHHHHHTTT
T ss_pred             CCC-eEEEEEECCCChHHHHH-HHHHHHHHHHcCC-CeE-EEEEeCcc-----------------------CHHHHHHcC
Confidence            366 67889999999999999 8999999999975 377 88887754                       236778888


Q ss_pred             CccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          154 LGKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      +..           .|+.+++.+|+++..+.+.
T Consensus        78 v~~-----------~Pt~~~~~~G~~~~~~~g~   99 (287)
T 3qou_A           78 LRA-----------IPTVYLFQNGQPVDGFQGP   99 (287)
T ss_dssp             CCS-----------SSEEEEEETTEEEEEEESC
T ss_pred             CCC-----------CCeEEEEECCEEEEEeeCC
Confidence            753           4767777899999888764

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=98.90  E-value=5.1e-10  Score=88.24  Aligned_cols=48  Identities=4%  Similarity=0.087  Sum_probs=38.3

Q ss_pred             ecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC
Q 028808           68 PIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND  121 (203)
Q Consensus        68 sL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~  121 (203)
                      .+++ ++|+ ++|+.||++|||+|..+ +|.|+++++++.  ++. ++.|+.|.
T Consensus        48 ~l~~-~~~k-~vvv~F~A~WC~pC~~~-~P~l~~l~~~~~--~v~-~~~v~~d~   95 (167)
T 1z6n_A           48 RLQR-IERR-YRLLVAGEMWCPDCQIN-LAALDFAQRLQP--NIE-LAIISKGR   95 (167)
T ss_dssp             HHHT-CCSC-EEEEEECCTTCHHHHHH-HHHHHHHHHHCT--TEE-EEEECHHH
T ss_pred             HHHH-hCCC-EEEEEEECCCChhHHHH-HHHHHHHHHHCC--CcE-EEEEECCC
Confidence            4566 4776 67778999999999999 999999988764  466 88887653

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=98.90  E-value=4e-11  Score=93.61  Aligned_cols=102  Identities=8%  Similarity=0.147  Sum_probs=66.1

Q ss_pred             eeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeC
Q 028808           65 ATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDF  144 (203)
Q Consensus        65 ~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~  144 (203)
                      +.+++.. .+|| +||+.||++|||+|..+ +|.|.++.+.++ .++. ++.|+.|....                    
T Consensus        37 ~~~~~~~-~~~k-~vlv~F~a~WC~~C~~~-~p~l~~~~~~~~-~~~~-~~~v~~d~~~~--------------------   91 (164)
T 1sen_A           37 DGKKEAA-ASGL-PLMVIIHKSWCGACKAL-KPKFAESTEISE-LSHN-FVMVNLEDEEE--------------------   91 (164)
T ss_dssp             HHHHHHH-HHTC-CEEEEEECTTCHHHHHH-HHHHHTCHHHHH-HHTT-SEEEEEEGGGS--------------------
T ss_pred             HHHHHHH-hcCC-eEEEEEECCCCHHHHHH-HHHHHHHHHHhh-cCCe-EEEEEecCCch--------------------
Confidence            4456665 3777 56778999999999999 999999766554 3577 88888764311                    


Q ss_pred             CchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCC---cccCCHHHHHhc
Q 028808          145 DGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSK---MKVSGGDVILGQ  202 (203)
Q Consensus       145 ~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~---~~~~~a~~vL~~  202 (203)
                        .+++.|++..         ...|+++++| +|+++...++..+..   +-..+++++++.
T Consensus        92 --~~~~~~~~~~---------~~~Pt~~~~d~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~  142 (164)
T 1sen_A           92 --PKDEDFSPDG---------GYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQG  142 (164)
T ss_dssp             --CSCGGGCTTC---------SCSSEEEEECTTSCBCTTCCCTTSCTTSTTCCCSHHHHHHH
T ss_pred             --HHHHHhcccC---------CcCCeEEEECCCCCEEEEEeCCCCccchhcccCCHHHHHHH
Confidence              0223344421         2468888999 999998877753210   002456666553

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=98.89  E-value=1.9e-09  Score=77.20  Aligned_cols=73  Identities=14%  Similarity=0.185  Sum_probs=56.1

Q ss_pred             CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCC
Q 028808           75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDL  154 (203)
Q Consensus        75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv  154 (203)
                      |+ ++|+.||++|||+|... .|.|+++++++.+ ++. ++.|+.|.                       +.++++.||+
T Consensus        24 ~~-~~vv~f~~~~C~~C~~~-~~~l~~~~~~~~~-~~~-~~~vd~~~-----------------------~~~~~~~~~v   76 (112)
T 1ep7_A           24 HK-PIVVDFTATWCGPCKMI-APLFETLSNDYAG-KVI-FLKVDVDA-----------------------VAAVAEAAGI   76 (112)
T ss_dssp             TC-CEEEEEECTTCHHHHHH-HHHHHHHHHHTTT-TSE-EEEEETTT-----------------------THHHHHHHTC
T ss_pred             CC-eEEEEEECCCCHHHHHH-HHHHHHHHHHcCC-CeE-EEEEECCc-----------------------hHHHHHHcCC
Confidence            66 56778999999999999 8999999888865 577 88887753                       4567778887


Q ss_pred             ccccccccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808          155 GKDLSAALLGPRSERWSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       155 ~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~  186 (203)
                      ..           .|+ +++. +|++++.+.+.
T Consensus        77 ~~-----------~Pt-~~~~~~G~~~~~~~G~   97 (112)
T 1ep7_A           77 TA-----------MPT-FHVYKDGVKADDLVGA   97 (112)
T ss_dssp             CB-----------SSE-EEEEETTEEEEEEESC
T ss_pred             Cc-----------ccE-EEEEECCeEEEEEcCC
Confidence            53           354 5555 99999887653

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.89  E-value=1.8e-09  Score=80.53  Aligned_cols=68  Identities=15%  Similarity=0.291  Sum_probs=51.6

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcC--CcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHH
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKG--IDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKS  151 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~g--v~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~  151 (203)
                      +++ .+|+.||++||++|... .|.|.++++++++.+  +. ++.|..+                       .+.++++.
T Consensus        33 ~~~-~vlv~f~a~wC~~C~~~-~p~~~~~~~~~~~~~~~v~-~~~vd~~-----------------------~~~~~~~~   86 (140)
T 2dj1_A           33 DKD-TVLLEFYAPWCGHCKQF-APEYEKIASTLKDNDPPIA-VAKIDAT-----------------------SASMLASK   86 (140)
T ss_dssp             TCS-EEEEEECCTTCHHHHTT-HHHHHHHHHHHHSSSSCCE-EEEECTT-----------------------TCHHHHHH
T ss_pred             cCC-eEEEEEECCCCHHHHHh-hHHHHHHHHHHhccCCceE-EEEEeCc-----------------------ccHHHHHH
Confidence            355 67889999999999999 899999999998775  44 4444432                       24568888


Q ss_pred             cCCccccccccCCCCcceEEEEEeCCE
Q 028808          152 LDLGKDLSAALLGPRSERWSAYVEDGR  178 (203)
Q Consensus       152 yGv~~~~~~~g~~~~~~r~tfIIddG~  178 (203)
                      ||+..           .|+.+++++|+
T Consensus        87 ~~v~~-----------~Pt~~~~~~G~  102 (140)
T 2dj1_A           87 FDVSG-----------YPTIKILKKGQ  102 (140)
T ss_dssp             TTCCS-----------SSEEEEEETTE
T ss_pred             CCCCc-----------cCeEEEEECCc
Confidence            88853           46677778898

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=98.89  E-value=2.1e-09  Score=78.05  Aligned_cols=74  Identities=12%  Similarity=0.168  Sum_probs=54.3

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      ++| +||+.||++||++|... .|.+.++.+++.  ++. ++.|..                       |.+.+++++||
T Consensus        19 ~~k-~vvv~F~a~wC~~C~~~-~p~~~~~~~~~~--~~~-~~~vd~-----------------------d~~~~l~~~~~   70 (105)
T 3zzx_A           19 GNK-LVVIDFYATWCGPCKMI-APKLEELSQSMS--DVV-FLKVDV-----------------------DECEDIAQDNQ   70 (105)
T ss_dssp             TTS-EEEEEEECTTCHHHHHH-HHHHHHHHHHCT--TEE-EEEEET-----------------------TTCHHHHHHTT
T ss_pred             CCC-EEEEEEECCCCCCccCC-CcchhhhhhccC--CeE-EEEEec-----------------------ccCHHHHHHcC
Confidence            455 78889999999999998 899998887764  344 555544                       33456888898


Q ss_pred             CccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          154 LGKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      +..           .|+.+++.+|+++....|.
T Consensus        71 V~~-----------~PT~~~~~~G~~v~~~~G~   92 (105)
T 3zzx_A           71 IAC-----------MPTFLFMKNGQKLDSLSGA   92 (105)
T ss_dssp             CCB-----------SSEEEEEETTEEEEEEESC
T ss_pred             CCe-----------ecEEEEEECCEEEEEEeCc
Confidence            853           4644444599999988763

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=98.89  E-value=5e-09  Score=74.07  Aligned_cols=75  Identities=16%  Similarity=0.238  Sum_probs=57.5

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      .++ .+|+.|+++|||.|... .|.|.++.+++.+ ++. ++.|+.+.                       +.+++++||
T Consensus        19 ~~~-~~lv~f~~~~C~~C~~~-~~~~~~~~~~~~~-~~~-~~~v~~~~-----------------------~~~~~~~~~   71 (107)
T 2i4a_A           19 ASG-LVLVDFWAEWCGPCKMI-GPALGEIGKEFAG-KVT-VAKVNIDD-----------------------NPETPNAYQ   71 (107)
T ss_dssp             CSS-EEEEEEECTTCHHHHHH-HHHHHHHHHHHTT-SEE-EEEEETTT-----------------------CCHHHHHTT
T ss_pred             CCC-EEEEEEECCCChhHHHH-hHHHHHHHHHhCC-cEE-EEEEECCC-----------------------CHHHHHhcC
Confidence            355 67778999999999999 8999999998865 466 78887653                       346788888


Q ss_pred             CccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          154 LGKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      +..           .|+.+++.+|+++..+.+.
T Consensus        72 v~~-----------~Pt~~~~~~G~~~~~~~G~   93 (107)
T 2i4a_A           72 VRS-----------IPTLMLVRDGKVIDKKVGA   93 (107)
T ss_dssp             CCS-----------SSEEEEEETTEEEEEEESC
T ss_pred             CCc-----------cCEEEEEeCCEEEEEecCC
Confidence            753           4666666899999887653

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=98.88  E-value=2.6e-09  Score=78.16  Aligned_cols=75  Identities=12%  Similarity=0.178  Sum_probs=56.9

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      .|+ .+|+.||++|||.|... .|.|++++++++. ++. ++.|+.|.                       +.+++++||
T Consensus        30 ~~k-~vlv~f~a~~C~~C~~~-~~~l~~~~~~~~~-~v~-~~~vd~d~-----------------------~~~l~~~~~   82 (119)
T 1w4v_A           30 SET-PVVVDFHAQWCGPCKIL-GPRLEKMVAKQHG-KVV-MAKVDIDD-----------------------HTDLAIEYE   82 (119)
T ss_dssp             CSS-CEEEEEECTTCHHHHHH-HHHHHHHHHHTTT-SSE-EEEEETTT-----------------------THHHHHHTT
T ss_pred             CCC-cEEEEEECCCCHHHHHH-HHHHHHHHHHhcC-CeE-EEEEeCCC-----------------------CHHHHHHcC
Confidence            355 56778999999999999 8999999888865 477 88887653                       346788888


Q ss_pred             CccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          154 LGKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      +..           .|+.+++.+|++++...+.
T Consensus        83 v~~-----------~Pt~~~~~~G~~~~~~~G~  104 (119)
T 1w4v_A           83 VSA-----------VPTVLAMKNGDVVDKFVGI  104 (119)
T ss_dssp             CCS-----------SSEEEEEETTEEEEEEESC
T ss_pred             CCc-----------ccEEEEEeCCcEEEEEcCC
Confidence            753           3656666799999877653

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=98.88  E-value=2.8e-09  Score=75.81  Aligned_cols=75  Identities=11%  Similarity=0.223  Sum_probs=56.8

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      .++ .+++.||++|||+|... .|.|+++++++++ .+. ++.|+.+.                       +.+++++||
T Consensus        19 ~~~-~~~v~f~~~~C~~C~~~-~~~l~~~~~~~~~-~~~-~~~v~~~~-----------------------~~~~~~~~~   71 (108)
T 2trx_A           19 ADG-AILVDFWAEWCGPCKMI-APILDEIADEYQG-KLT-VAKLNIDQ-----------------------NPGTAPKYG   71 (108)
T ss_dssp             CSS-EEEEEEECTTCHHHHHH-HHHHHHHHHHTTT-TEE-EEEEETTT-----------------------CTTHHHHTT
T ss_pred             cCC-eEEEEEECCCCHhHHHH-HHHHHHHHHHhCC-CcE-EEEEECCC-----------------------CHHHHHHcC
Confidence            355 67788999999999999 8999999888864 366 77776543                       335778888


Q ss_pred             CccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          154 LGKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      +..           .|+.+++.+|+++..+.+.
T Consensus        72 v~~-----------~Pt~~~~~~G~~~~~~~G~   93 (108)
T 2trx_A           72 IRG-----------IPTLLLFKNGEVAATKVGA   93 (108)
T ss_dssp             CCS-----------SSEEEEEETTEEEEEEESC
T ss_pred             Ccc-----------cCEEEEEeCCEEEEEEecC
Confidence            853           4666667899999887653

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=98.88  E-value=8.2e-10  Score=84.82  Aligned_cols=73  Identities=11%  Similarity=0.141  Sum_probs=54.7

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      .++ +||+.||++||++|..+ .|.|.+++++++++ +. ++.|+.|                       .+.++++.|+
T Consensus        22 ~~k-~vlv~F~a~WC~~C~~~-~p~l~~l~~~~~~~-~~-~~~vd~d-----------------------~~~~l~~~~~   74 (149)
T 3gix_A           22 AEK-VLVLRFGRDEDPVCLQL-DDILSKTSSDLSKM-AA-IYLVDVD-----------------------QTAVYTQYFD   74 (149)
T ss_dssp             CSS-EEEEEEECTTSHHHHHH-HHHHHHHHTTTTTT-EE-EEEEETT-----------------------TCCHHHHHTT
T ss_pred             CCC-EEEEEEECCCCHHHHHH-HHHHHHHHHHccCc-eE-EEEEECC-----------------------cCHHHHHHcC
Confidence            355 77889999999999999 89999998888653 55 7777653                       3456788888


Q ss_pred             CccccccccCCCCcceEEEEEe-CCEEEEEEee
Q 028808          154 LGKDLSAALLGPRSERWSAYVE-DGRIKALNVE  185 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~  185 (203)
                      +..           .|+++ +. +|++++...+
T Consensus        75 v~~-----------~Pt~~-~~~~G~~v~~~~g   95 (149)
T 3gix_A           75 ISY-----------IPSTV-FFFNGQHMKVDYG   95 (149)
T ss_dssp             CCS-----------SSEEE-EEETTEEEEEECS
T ss_pred             CCc-----------cCeEE-EEECCeEEEeecC
Confidence            853           46555 65 9999955544

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=98.87  E-value=4.1e-09  Score=76.90  Aligned_cols=73  Identities=11%  Similarity=0.250  Sum_probs=55.3

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      +|+ .+|+.||++|||+|... .|.|+++++++.+  +. ++.|+.|.                       +.+++++||
T Consensus        29 ~~k-~vvv~F~a~wC~~C~~~-~p~l~~~~~~~~~--v~-~~~vd~~~-----------------------~~~l~~~~~   80 (114)
T 2oe3_A           29 QND-KLVIDFYATWCGPCKMM-QPHLTKLIQAYPD--VR-FVKCDVDE-----------------------SPDIAKECE   80 (114)
T ss_dssp             HCS-EEEEEEECTTCHHHHHT-HHHHHHHHHHCTT--SE-EEEEETTT-----------------------CHHHHHHTT
T ss_pred             CCC-EEEEEEECCCCHHHHHH-HHHHHHHHHHCCC--CE-EEEEECCC-----------------------CHHHHHHCC
Confidence            355 67788999999999999 8999999888754  77 88887653                       345778888


Q ss_pred             CccccccccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808          154 LGKDLSAALLGPRSERWSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~  186 (203)
                      +..           .|+ +++. +|+++....+.
T Consensus        81 v~~-----------~Pt-~~~~~~G~~~~~~~G~  102 (114)
T 2oe3_A           81 VTA-----------MPT-FVLGKDGQLIGKIIGA  102 (114)
T ss_dssp             CCS-----------BSE-EEEEETTEEEEEEESS
T ss_pred             CCc-----------ccE-EEEEeCCeEEEEEeCC
Confidence            753           354 4555 99999887653

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=98.86  E-value=2.4e-09  Score=79.76  Aligned_cols=75  Identities=9%  Similarity=0.174  Sum_probs=57.2

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      +++ .+|++||++|||+|... .|.|+++++++++ ++. ++.|+.|+                       +.+++++||
T Consensus        39 ~~k-~vlv~F~a~wC~~C~~~-~p~l~~l~~~~~~-~v~-~~~vd~~~-----------------------~~~l~~~~~   91 (128)
T 2o8v_B           39 ADG-AILVDFWAEWCGPAKMI-APILDEIADEYQG-KLT-VAKLNIDQ-----------------------NPGTAPKYG   91 (128)
T ss_dssp             CSS-EEEEEEECSSCHHHHHT-HHHHHHHHHHTTT-TEE-EEEEETTT-----------------------CCTTSGGGT
T ss_pred             cCC-EEEEEEECCCCHHHHHH-hHHHHHHHHHhcC-CeE-EEEEECCC-----------------------CHHHHHHcC
Confidence            355 67888999999999999 8999999988865 366 88887653                       235667787


Q ss_pred             CccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          154 LGKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      +..           .|+.+++.+|++++...+.
T Consensus        92 v~~-----------~Pt~~~~~~G~~~~~~~G~  113 (128)
T 2o8v_B           92 IRG-----------IPTLLLFKNGEVAATKVGA  113 (128)
T ss_dssp             CCS-----------SSEEEEEETTEEEEEEESC
T ss_pred             CCc-----------cCEEEEEeCCEEEEEEcCC
Confidence            753           4767777899999887653

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=98.86  E-value=3.9e-09  Score=73.87  Aligned_cols=74  Identities=5%  Similarity=0.110  Sum_probs=56.6

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      +++ .+++.|+++|||.|... .+.+.++.+++++  +. ++.|+.|.                       +.++++.||
T Consensus        15 ~~~-~~~v~f~~~~C~~C~~~-~~~~~~~~~~~~~--~~-~~~v~~~~-----------------------~~~~~~~~~   66 (104)
T 2e0q_A           15 SHE-IAVVDFWAEWCAPCLIL-APIIEELAEDYPQ--VG-FGKLNSDE-----------------------NPDIAARYG   66 (104)
T ss_dssp             HSS-EEEEEEECTTCHHHHHH-HHHHHHHHHHCTT--SE-EEEEETTT-----------------------CHHHHHHTT
T ss_pred             cCC-cEEEEEECCCChhHHHH-hHHHHHHHHHcCC--ce-EEEEECCC-----------------------CHHHHHhCC
Confidence            355 67778999999999998 8999998888764  77 88888753                       345778888


Q ss_pred             CccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          154 LGKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      +..           .|+.+++.+|+++....+.
T Consensus        67 v~~-----------~Pt~~~~~~g~~~~~~~g~   88 (104)
T 2e0q_A           67 VMS-----------LPTVIFFKDGEPVDEIIGA   88 (104)
T ss_dssp             CCS-----------SCEEEEEETTEEEEEEESC
T ss_pred             ccc-----------cCEEEEEECCeEhhhccCC
Confidence            753           4666666799999877653

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=98.86  E-value=4e-09  Score=77.19  Aligned_cols=74  Identities=12%  Similarity=0.218  Sum_probs=56.6

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      +|+ ++++.||++|||+|... .|.+++++++++  ++. ++.|..++                      .+.+++++||
T Consensus        36 ~~~-~~vv~f~a~wC~~C~~~-~~~l~~~~~~~~--~~~-~~~vd~~~----------------------~~~~~~~~~~   88 (124)
T 1faa_A           36 GDK-PVVLDMFTQWCGPCKAM-APKYEKLAEEYL--DVI-FLKLDCNQ----------------------ENKTLAKELG   88 (124)
T ss_dssp             TTS-CEEEEEECTTCHHHHHH-HHHHHHHHHHCT--TSE-EEEEECSS----------------------TTHHHHHHHC
T ss_pred             CCC-EEEEEEECCcCHhHHHH-hHHHHHHHHHCC--CCE-EEEEecCc----------------------chHHHHHHcC
Confidence            566 56677899999999999 899999988875  577 88887753                      2456778888


Q ss_pred             CccccccccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808          154 LGKDLSAALLGPRSERWSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~  186 (203)
                      +..           .|+ +++. +|+++....+.
T Consensus        89 v~~-----------~Pt-~~~~~~G~~~~~~~G~  110 (124)
T 1faa_A           89 IRV-----------VPT-FKILKENSVVGEVTGA  110 (124)
T ss_dssp             CSS-----------SSE-EEEEETTEEEEEEESS
T ss_pred             CCe-----------eeE-EEEEeCCcEEEEEcCC
Confidence            753           354 6666 99999887753

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.86  E-value=6.1e-09  Score=77.94  Aligned_cols=79  Identities=11%  Similarity=0.127  Sum_probs=55.9

Q ss_pred             EEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccc
Q 028808           78 VVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKD  157 (203)
Q Consensus        78 vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~  157 (203)
                      ++|+.||++||++|... .|.|+++++++++.++. ++.|..+..   .                    ++++.|++...
T Consensus        28 ~vlv~f~a~wC~~C~~~-~p~~~~l~~~~~~~~v~-~~~vd~~~~---~--------------------~~~~~~~v~~~   82 (137)
T 2dj0_A           28 TWIVEFFANWSNDCQSF-APIYADLSLKYNCTGLN-FGKVDVGRY---T--------------------DVSTRYKVSTS   82 (137)
T ss_dssp             CEEEEECCTTCSTTTTT-HHHHHHHHHHHCSSSCE-EEECCTTTC---H--------------------HHHHHTTCCCC
T ss_pred             EEEEEEECCCCHHHHHH-HHHHHHHHHHhCCCCeE-EEEEeCccC---H--------------------HHHHHccCccc
Confidence            67788999999999999 99999999999765677 877766542   2                    24444444311


Q ss_pred             cccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          158 LSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       158 ~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      .     +.+..|+.+++.+|+++....+.
T Consensus        83 ~-----~~~~~Pt~~~~~~G~~~~~~~G~  106 (137)
T 2dj0_A           83 P-----LTKQLPTLILFQGGKEAMRRPQI  106 (137)
T ss_dssp             S-----SSSCSSEEEEESSSSEEEEESCB
T ss_pred             C-----CcCCCCEEEEEECCEEEEEecCc
Confidence            0     11245766666799999887765

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=98.85  E-value=3.8e-09  Score=78.92  Aligned_cols=81  Identities=15%  Similarity=0.262  Sum_probs=59.9

Q ss_pred             eeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCC
Q 028808           66 TTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFD  145 (203)
Q Consensus        66 ~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~  145 (203)
                      .+++++ .+|+ ++|++||++|||+|... .|.|+++++++.  ++. ++.|+.|.                       +
T Consensus        38 ~~~~~~-~~~k-~vvv~f~a~wC~~C~~~-~~~l~~l~~~~~--~v~-~~~v~~~~-----------------------~   88 (139)
T 3d22_A           38 KLSEAS-RDGK-IVLANFSARWCGPSRQI-APYYIELSENYP--SLM-FLVIDVDE-----------------------L   88 (139)
T ss_dssp             HHHHHH-HHTC-CEEEEEECTTCHHHHHH-HHHHHHHHHHCT--TSE-EEEEETTT-----------------------S
T ss_pred             HHHHHh-hcCC-EEEEEEECCCCHHHHHH-HHHHHHHHHHCC--CCE-EEEEeCcc-----------------------c
Confidence            344444 2577 56778999999999999 899999988874  577 88888753                       3


Q ss_pred             chHHHHcCCccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          146 GSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       146 ~~v~~~yGv~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      .+++++||+..           .|+.+++.+|++++.+.+.
T Consensus        89 ~~~~~~~~v~~-----------~Pt~~~~~~G~~~~~~~G~  118 (139)
T 3d22_A           89 SDFSASWEIKA-----------TPTFFFLRDGQQVDKLVGA  118 (139)
T ss_dssp             HHHHHHTTCCE-----------ESEEEEEETTEEEEEEESC
T ss_pred             HHHHHHcCCCc-----------ccEEEEEcCCeEEEEEeCC
Confidence            46778888753           3544444599999988764

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=98.85  E-value=6.4e-09  Score=74.99  Aligned_cols=84  Identities=14%  Similarity=0.203  Sum_probs=59.8

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      +|+ ++|+.||++|||.|... .|.|.+++++++  ++. ++.|+.+.                       +.+++++||
T Consensus        25 ~~k-~vlv~f~a~~C~~C~~~-~~~l~~l~~~~~--~v~-~~~vd~~~-----------------------~~~~~~~~~   76 (112)
T 1syr_A           25 QNE-LVIVDFFAEWCGPCKRI-APFYEECSKTYT--KMV-FIKVDVDE-----------------------VSEVTEKEN   76 (112)
T ss_dssp             HCS-EEEEEEECTTCHHHHHH-HHHHHHHHHHCT--TSE-EEEEETTT-----------------------THHHHHHTT
T ss_pred             cCC-eEEEEEECCCCHHHHHH-HHHHHHHHHHcC--CCE-EEEEECCC-----------------------CHHHHHHcC
Confidence            355 67788999999999999 899999888875  577 88887754                       236777887


Q ss_pred             CccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCCcccCCHHHHHhc
Q 028808          154 LGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSKMKVSGGDVILGQ  202 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~~~~~~a~~vL~~  202 (203)
                      +..           .|+ +++. +|+++....+.     +.++..+.|++
T Consensus        77 v~~-----------~Pt-~~~~~~G~~~~~~~G~-----~~~~l~~~l~~  109 (112)
T 1syr_A           77 ITS-----------MPT-FKVYKNGSSVDTLLGA-----NDSALKQLIEK  109 (112)
T ss_dssp             CCS-----------SSE-EEEEETTEEEEEEESC-----CHHHHHHHHHT
T ss_pred             CCc-----------ccE-EEEEECCcEEEEEeCC-----CHHHHHHHHHH
Confidence            753           354 5555 99998887653     23444555543

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=98.84  E-value=3.4e-09  Score=75.86  Aligned_cols=74  Identities=14%  Similarity=0.305  Sum_probs=55.1

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      +|+ .+++.||++|||+|... .+.|+++.+++.  ++. ++.|+.|.                       +.+++++||
T Consensus        25 ~~~-~~vv~f~~~~C~~C~~~-~~~l~~~~~~~~--~v~-~~~v~~~~-----------------------~~~~~~~~~   76 (113)
T 1ti3_A           25 SQK-LIVVDFTASWCPPCKMI-APIFAELAKKFP--NVT-FLKVDVDE-----------------------LKAVAEEWN   76 (113)
T ss_dssp             SSS-EEEEEEECSSCHHHHHH-HHHHHHHHHHCS--SEE-EEEEETTT-----------------------CHHHHHHHH
T ss_pred             cCC-eEEEEEECCCCHHHHHH-HHHHHHHHHhCC--CcE-EEEEEccc-----------------------cHHHHHhCC
Confidence            466 67788999999999998 899998888775  576 77787643                       345777787


Q ss_pred             CccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          154 LGKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      +..           .|+.+++.+|+++..+.+.
T Consensus        77 v~~-----------~Pt~~~~~~G~~~~~~~g~   98 (113)
T 1ti3_A           77 VEA-----------MPTFIFLKDGKLVDKTVGA   98 (113)
T ss_dssp             CSS-----------TTEEEEEETTEEEEEEECC
T ss_pred             CCc-----------ccEEEEEeCCEEEEEEecC
Confidence            743           3544455699999888763

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=98.84  E-value=5.3e-09  Score=74.06  Aligned_cols=75  Identities=15%  Similarity=0.157  Sum_probs=57.1

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      +++ .+++.||++|||.|... .|.++++++++++ .+. ++.|..|                       .+.++++.||
T Consensus        20 ~~~-~~lv~f~~~~C~~C~~~-~~~~~~~~~~~~~-~~~-~~~v~~~-----------------------~~~~~~~~~~   72 (109)
T 3tco_A           20 NNK-LVLVDCWAEWCAPCHLY-EPIYKKVAEKYKG-KAV-FGRLNVD-----------------------ENQKIADKYS   72 (109)
T ss_dssp             HSS-EEEEEEECTTCHHHHHH-HHHHHHHHHHTTT-TSE-EEEEETT-----------------------TCHHHHHHTT
T ss_pred             cCC-eEEEEEECCCCHHHHhh-hHHHHHHHHHhCC-Cce-EEEEccc-----------------------cCHHHHHhcC
Confidence            355 67788999999999999 8999999998875 366 7777653                       3446777787


Q ss_pred             CccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          154 LGKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      +..           .|+.+++.+|+++....+.
T Consensus        73 i~~-----------~Pt~~~~~~g~~~~~~~g~   94 (109)
T 3tco_A           73 VLN-----------IPTTLIFVNGQLVDSLVGA   94 (109)
T ss_dssp             CCS-----------SSEEEEEETTEEEEEEESC
T ss_pred             ccc-----------CCEEEEEcCCcEEEeeecc
Confidence            753           4666666799999987653

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=3.4e-09  Score=77.92  Aligned_cols=71  Identities=11%  Similarity=0.229  Sum_probs=54.7

Q ss_pred             cccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHH
Q 028808           71 DIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHK  150 (203)
Q Consensus        71 dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~  150 (203)
                      ++++++  +|+.||++||++|... .|.|.++++++++.++. ++.|..+.                       +.++++
T Consensus        19 ~~~~~~--vlv~f~a~wC~~C~~~-~p~~~~~~~~~~~~~v~-~~~vd~~~-----------------------~~~~~~   71 (126)
T 1x5e_A           19 ELLEGD--WMIEFYAPWCPACQNL-QPEWESFAEWGEDLEVN-IAKVDVTE-----------------------QPGLSG   71 (126)
T ss_dssp             HHTSSE--EEEEEECSSCHHHHHH-HHHHHHHHHHHGGGTCE-EEEEETTT-----------------------CHHHHH
T ss_pred             HHhCCC--EEEEEECCCCHHHHHH-hHHHHHHHHHhccCCeE-EEEEECcC-----------------------CHHHHH
Confidence            434543  6788999999999999 89999999999876787 88887653                       345778


Q ss_pred             HcCCccccccccCCCCcceEEEEEeCCEE
Q 028808          151 SLDLGKDLSAALLGPRSERWSAYVEDGRI  179 (203)
Q Consensus       151 ~yGv~~~~~~~g~~~~~~r~tfIIddG~I  179 (203)
                      .|++..           .|+.+++.+|++
T Consensus        72 ~~~v~~-----------~Pt~~~~~~G~~   89 (126)
T 1x5e_A           72 RFIINA-----------LPTIYHCKDGEF   89 (126)
T ss_dssp             HTTCCS-----------SSEEEEEETTEE
T ss_pred             HcCCcc-----------cCEEEEEeCCeE
Confidence            888743           466777789986

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=98.84  E-value=6.4e-09  Score=73.40  Aligned_cols=73  Identities=15%  Similarity=0.210  Sum_probs=55.2

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      +++ .+++.|+++|||+|... .|.|+++.++++ .++. ++.|+.+.                       +.++++.||
T Consensus        19 ~~~-~~vv~f~~~~C~~C~~~-~~~l~~~~~~~~-~~~~-~~~v~~~~-----------------------~~~~~~~~~   71 (106)
T 1xwb_A           19 SGK-LVVLDFFATWCGPCKMI-SPKLVELSTQFA-DNVV-VLKVDVDE-----------------------CEDIAMEYN   71 (106)
T ss_dssp             TTS-EEEEEEECTTCHHHHHH-HHHHHHHHHHTT-TTEE-EEEEETTT-----------------------CHHHHHHTT
T ss_pred             CCC-EEEEEEECCcCHHHHHh-hHHHHHHHHHhC-CCeE-EEEEeccc-----------------------hHHHHHHcC
Confidence            566 67778999999999998 899999888875 3566 77777652                       356778888


Q ss_pred             CccccccccCCCCcceEEEEEe-CCEEEEEEee
Q 028808          154 LGKDLSAALLGPRSERWSAYVE-DGRIKALNVE  185 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~  185 (203)
                      +..           .|+ +++. +|+++..+.+
T Consensus        72 v~~-----------~Pt-~~~~~~G~~~~~~~g   92 (106)
T 1xwb_A           72 ISS-----------MPT-FVFLKNGVKVEEFAG   92 (106)
T ss_dssp             CCS-----------SSE-EEEEETTEEEEEEES
T ss_pred             CCc-----------ccE-EEEEcCCcEEEEEcC
Confidence            753           354 5554 9999988765

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=98.83  E-value=7.6e-09  Score=73.11  Aligned_cols=75  Identities=11%  Similarity=0.142  Sum_probs=56.9

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      .++ .+++.|+++|||.|... .|.|.++.+++.+ ++. ++.|+.+.                       +.++++.||
T Consensus        17 ~~~-~~lv~f~~~~C~~C~~~-~~~l~~~~~~~~~-~~~-~~~v~~~~-----------------------~~~~~~~~~   69 (109)
T 2yzu_A           17 QHP-LVLVDFWAEWCAPCRMI-APILEEIAKEYEG-KLL-VAKLDVDE-----------------------NPKTAMRYR   69 (109)
T ss_dssp             HCS-EEEEEEECTTCHHHHHH-HHHHHHHHHHTBT-TBE-EEEEETTT-----------------------CHHHHHHTT
T ss_pred             CCC-eEEEEEECCCCHHHHHh-hHHHHHHHHHhhC-ceE-EEEEECCC-----------------------CHhHHHhCC
Confidence            355 67778999999999998 8999999888864 376 88887654                       345777888


Q ss_pred             CccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          154 LGKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      +..           .|+.+++.+|++++...+.
T Consensus        70 v~~-----------~Pt~~~~~~g~~~~~~~g~   91 (109)
T 2yzu_A           70 VMS-----------IPTVILFKDGQPVEVLVGA   91 (109)
T ss_dssp             CCS-----------SSEEEEEETTEEEEEEESC
T ss_pred             CCc-----------CCEEEEEeCCcEeeeEeCC
Confidence            753           4666666899999877653

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=98.83  E-value=2.9e-09  Score=79.86  Aligned_cols=80  Identities=10%  Similarity=0.047  Sum_probs=59.2

Q ss_pred             EEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccc
Q 028808           78 VVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKD  157 (203)
Q Consensus        78 vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~  157 (203)
                      ++|+.||++|||+|..+ +|.|++++++++   +. ++.|+.++.... ..             .|.+.+++++||+.. 
T Consensus        33 ~vlv~F~a~wC~~C~~~-~p~l~~l~~~~~---v~-~~~vd~~~~~~~-~~-------------~d~~~~l~~~~~v~~-   92 (135)
T 3emx_A           33 DAILAVYSKTCPHCHRD-WPQLIQASKEVD---VP-IVMFIWGSLIGE-RE-------------LSAARLEMNKAGVEG-   92 (135)
T ss_dssp             SEEEEEEETTCHHHHHH-HHHHHHHHTTCC---SC-EEEEEECTTCCH-HH-------------HHHHHHHHHHHTCCS-
T ss_pred             cEEEEEECCcCHhhhHh-ChhHHHHHHHCC---CE-EEEEECCCchhh-hh-------------hhhhHHHHHHcCCce-
Confidence            67888999999999999 899999887764   77 999988664221 11             133466788898853 


Q ss_pred             cccccCCCCcceEEEEE-eCCEEEEEEeecCC
Q 028808          158 LSAALLGPRSERWSAYV-EDGRIKALNVEEAP  188 (203)
Q Consensus       158 ~~~~g~~~~~~r~tfII-ddG~I~~~~~~~~~  188 (203)
                                .| ||++ ++|+++....+..+
T Consensus        93 ----------~P-t~~~~~~G~~v~~~~G~~~  113 (135)
T 3emx_A           93 ----------TP-TLVFYKEGRIVDKLVGATP  113 (135)
T ss_dssp             ----------SS-EEEEEETTEEEEEEESCCC
T ss_pred             ----------eC-eEEEEcCCEEEEEEeCCCC
Confidence                      46 4555 59999999887543

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=98.83  E-value=6e-09  Score=73.43  Aligned_cols=74  Identities=12%  Similarity=0.211  Sum_probs=55.1

Q ss_pred             CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCC
Q 028808           75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDL  154 (203)
Q Consensus        75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv  154 (203)
                      ++ .+++.|+++|||.|... .|.++++++++++. +. ++.|+.++                       +.++++.||+
T Consensus        18 ~~-~~~v~f~~~~C~~C~~~-~~~~~~~~~~~~~~-~~-~~~v~~~~-----------------------~~~~~~~~~v   70 (105)
T 1fb6_A           18 EV-PVMVDFWAPWCGPCKLI-APVIDELAKEYSGK-IA-VYKLNTDE-----------------------APGIATQYNI   70 (105)
T ss_dssp             SS-CEEEEEECTTCHHHHHH-HHHHHHHHHHTTTT-CE-EEEEETTT-----------------------CHHHHHHTTC
T ss_pred             CC-cEEEEEECCCChHHHHH-HHHHHHHHHHhcCc-eE-EEEEcCcc-----------------------hHHHHHhCCC
Confidence            45 56778999999999998 89999988888653 76 77777653                       3467778877


Q ss_pred             ccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          155 GKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       155 ~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      ..           .|+.+++.+|+++..+.+.
T Consensus        71 ~~-----------~Pt~~~~~~g~~~~~~~G~   91 (105)
T 1fb6_A           71 RS-----------IPTVLFFKNGERKESIIGA   91 (105)
T ss_dssp             CS-----------SSEEEEEETTEEEEEEEEC
T ss_pred             Cc-----------ccEEEEEeCCeEEEEEecC
Confidence            53           3554444599999888764

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=98.83  E-value=5.6e-09  Score=76.06  Aligned_cols=73  Identities=16%  Similarity=0.279  Sum_probs=55.5

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      +++ .+|+.||++|||+|... .|.|+++++++++  +. ++.|+.|.                       +.+++++||
T Consensus        33 ~~~-~~vv~f~~~~C~~C~~~-~~~l~~~~~~~~~--~~-~~~vd~~~-----------------------~~~~~~~~~   84 (122)
T 2vlu_A           33 AKK-LVVIDFTASWCGPCRIM-APVFADLAKKFPN--AV-FLKVDVDE-----------------------LKPIAEQFS   84 (122)
T ss_dssp             TTC-CEEEEEECTTCHHHHHH-HHHHHHHHHHCTT--SE-EEEEETTT-----------------------CHHHHHHTT
T ss_pred             cCC-EEEEEEECCCCHHHHHH-HHHHHHHHHHCCC--cE-EEEEECCC-----------------------CHHHHHHcC
Confidence            456 56778899999999999 8999998888764  77 88887754                       346778888


Q ss_pred             CccccccccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808          154 LGKDLSAALLGPRSERWSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~  186 (203)
                      +..           .|+ |++. +|+++..+.+.
T Consensus        85 v~~-----------~Pt-~~~~~~G~~~~~~~G~  106 (122)
T 2vlu_A           85 VEA-----------MPT-FLFMKEGDVKDRVVGA  106 (122)
T ss_dssp             CCS-----------SSE-EEEEETTEEEEEEESS
T ss_pred             CCc-----------ccE-EEEEeCCEEEEEEeCc
Confidence            753           354 5555 99999887653

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=98.82  E-value=3.9e-09  Score=79.13  Aligned_cols=77  Identities=5%  Similarity=0.166  Sum_probs=55.8

Q ss_pred             cccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchH
Q 028808           69 IKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSF  148 (203)
Q Consensus        69 L~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v  148 (203)
                      +++ .+|| ++|+.||++||++|... .|.|+++.+++   ++. ++.|..+.                       +.++
T Consensus        35 l~~-~~~k-~vvv~F~a~wC~~C~~~-~p~l~~l~~~~---~v~-~~~vd~~~-----------------------~~~l   84 (133)
T 3cxg_A           35 FSS-TQNS-SIVIKFGAVWCKPCNKI-KEYFKNQLNYY---YVT-LVDIDVDI-----------------------HPKL   84 (133)
T ss_dssp             HTC--CCS-EEEEEEECTTCHHHHHT-HHHHHGGGGTE---ECE-EEEEETTT-----------------------CHHH
T ss_pred             HHh-cCCC-EEEEEEECCCCHHHHHH-HHHHHHHHHhc---CEE-EEEEeccc-----------------------hHHH
Confidence            445 3666 67788999999999999 89998877655   466 77776442                       4568


Q ss_pred             HHHcCCccccccccCCCCcceEEEEE-e-CCE--EEEEEeec
Q 028808          149 HKSLDLGKDLSAALLGPRSERWSAYV-E-DGR--IKALNVEE  186 (203)
Q Consensus       149 ~~~yGv~~~~~~~g~~~~~~r~tfII-d-dG~--I~~~~~~~  186 (203)
                      ++.||+..           .|+++++ + ||+  ++....+.
T Consensus        85 ~~~~~v~~-----------~Pt~~~~~~~~g~g~~~~~~~G~  115 (133)
T 3cxg_A           85 NDQHNIKA-----------LPTFEFYFNLNNEWVLVHTVEGA  115 (133)
T ss_dssp             HHHTTCCS-----------SSEEEEEEEETTEEEEEEEEESC
T ss_pred             HHhcCCCC-----------CCEEEEEEecCCCeEEEEEEcCC
Confidence            88888753           4777777 5 777  88877653

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=98.82  E-value=6.7e-09  Score=79.46  Aligned_cols=74  Identities=1%  Similarity=0.035  Sum_probs=57.5

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      +|+ ++|+.||++||++|... .|.|+++++++.  ++. ++.|..+.                       +.++++.||
T Consensus        31 ~~~-~vvv~F~a~wC~~C~~~-~p~l~~l~~~~~--~v~-~~~vd~~~-----------------------~~~l~~~~~   82 (153)
T 2wz9_A           31 AKS-LLVVHFWAPWAPQCAQM-NEVMAELAKELP--QVS-FVKLEAEG-----------------------VPEVSEKYE   82 (153)
T ss_dssp             TTS-CEEEEEECTTCHHHHHH-HHHHHHHHHHCT--TSE-EEEEETTT-----------------------SHHHHHHTT
T ss_pred             CCC-eEEEEEECCCCHhHHHH-HHHHHHHHHHcC--CeE-EEEEECCC-----------------------CHHHHHHcC
Confidence            366 57778999999999999 899999888873  577 88887654                       346778888


Q ss_pred             CccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          154 LGKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      +..           .|+.+++++|+++....+.
T Consensus        83 v~~-----------~Pt~~~~~~G~~~~~~~G~  104 (153)
T 2wz9_A           83 ISS-----------VPTFLFFKNSQKIDRLDGA  104 (153)
T ss_dssp             CCS-----------SSEEEEEETTEEEEEEESS
T ss_pred             CCC-----------CCEEEEEECCEEEEEEeCC
Confidence            753           4777888899998887653

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=98.82  E-value=3e-09  Score=77.22  Aligned_cols=71  Identities=17%  Similarity=0.254  Sum_probs=53.9

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      +|+ .+++.||++|||+|... .|.++++++++   ++. ++.|+.|.                       +.+++++||
T Consensus        32 ~~~-~~vv~f~a~wC~~C~~~-~~~~~~~~~~~---~~~-~~~vd~~~-----------------------~~~~~~~~~   82 (117)
T 2xc2_A           32 KNK-LVVVDFFATWCGPCKTI-APLFKELSEKY---DAI-FVKVDVDK-----------------------LEETARKYN   82 (117)
T ss_dssp             TTS-CEEEEEECTTCHHHHHH-HHHHHHHHTTS---SSE-EEEEETTT-----------------------SHHHHHHTT
T ss_pred             CCC-EEEEEEECCCCHhHHHH-hHHHHHHHHHc---CcE-EEEEECCc-----------------------cHHHHHHcC
Confidence            566 56778999999999998 89999887766   677 88887653                       346778888


Q ss_pred             CccccccccCCCCcceEEEEE-eCCEEEEEEee
Q 028808          154 LGKDLSAALLGPRSERWSAYV-EDGRIKALNVE  185 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfII-ddG~I~~~~~~  185 (203)
                      +..           .|+ +++ .+|+++....+
T Consensus        83 v~~-----------~Pt-~~~~~~G~~~~~~~G  103 (117)
T 2xc2_A           83 ISA-----------MPT-FIAIKNGEKVGDVVG  103 (117)
T ss_dssp             CCS-----------SSE-EEEEETTEEEEEEES
T ss_pred             CCc-----------cce-EEEEeCCcEEEEEeC
Confidence            753           354 555 49999988776

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=98.81  E-value=4.2e-09  Score=80.18  Aligned_cols=74  Identities=12%  Similarity=0.143  Sum_probs=56.0

Q ss_pred             CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCC
Q 028808           75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDL  154 (203)
Q Consensus        75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv  154 (203)
                      ++ +||+.||++||++|... .|.|++++++++. .+. ++.|..|.                       +.+++++||+
T Consensus        23 ~k-~vlv~F~a~wC~~C~~~-~p~l~~l~~~~~~-~v~-~~~vd~d~-----------------------~~~~~~~~~i   75 (142)
T 1qgv_A           23 DR-VVVIRFGHDWDPTCMKM-DEVLYSIAEKVKN-FAV-IYLVDITE-----------------------VPDFNKMYEL   75 (142)
T ss_dssp             SS-EEEEEEECTTSHHHHHH-HHHHHHHHHHHTT-TEE-EEEEETTT-----------------------CCTTTTSSCS
T ss_pred             CC-EEEEEEECCCCHHHHHH-HHHHHHHHHHhCC-CeE-EEEEcccc-----------------------CHHHHHHcCC
Confidence            55 67889999999999999 8999999999864 366 88887653                       1235667777


Q ss_pred             ccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          155 GKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       155 ~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      .           ..|+++++++|+++....+.
T Consensus        76 ~-----------~~Pt~~~~~~G~~v~~~~g~   96 (142)
T 1qgv_A           76 Y-----------DPCTVMFFFRNKHIMIDLGT   96 (142)
T ss_dssp             C-----------SSCEEEEEETTEEEEEECC-
T ss_pred             C-----------CCCEEEEEECCcEEEEecCC
Confidence            4           35777777899998876653

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=98.79  E-value=9.7e-09  Score=74.10  Aligned_cols=74  Identities=11%  Similarity=0.080  Sum_probs=55.4

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      +++ .+|+.||++|||+|... .|.|.++.+++.  ++. ++.|..+.                       +.+++++||
T Consensus        18 ~~~-~~vv~f~a~wC~~C~~~-~~~l~~~~~~~~--~v~-~~~vd~~~-----------------------~~~l~~~~~   69 (110)
T 2l6c_A           18 GLS-DAIVFFHKNLCPHCKNM-EKVLDKFGARAP--QVA-ISSVDSEA-----------------------RPELMKELG   69 (110)
T ss_dssp             TCS-EEEEEEECSSCSTHHHH-HHHHHHHHTTCT--TSC-EEEEEGGG-----------------------CHHHHHHTT
T ss_pred             cCC-CEEEEEECCCCHhHHHH-HHHHHHHHHHCC--CcE-EEEEcCcC-----------------------CHHHHHHcC
Confidence            455 57778999999999998 899888777664  576 77776543                       445778888


Q ss_pred             CccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          154 LGKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      +..           .|+.+++.+|+++....+.
T Consensus        70 v~~-----------~Pt~~~~~~G~~v~~~~G~   91 (110)
T 2l6c_A           70 FER-----------VPTLVFIRDGKVAKVFSGI   91 (110)
T ss_dssp             CCS-----------SCEEEEEESSSEEEEEESC
T ss_pred             Ccc-----------cCEEEEEECCEEEEEEcCC
Confidence            753           4666677899999888763

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=98.79  E-value=7.4e-09  Score=73.07  Aligned_cols=74  Identities=14%  Similarity=0.228  Sum_probs=56.9

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      +++ .+++.||++|||+|... .|.++++.+++++  +. ++.|..|.                       +.++++.||
T Consensus        19 ~~~-~~~v~f~~~~C~~C~~~-~~~~~~~~~~~~~--~~-~~~vd~~~-----------------------~~~~~~~~~   70 (105)
T 3m9j_A           19 GDK-LVVVDFSATWCGPCKMI-KPFFHSLSEKYSN--VI-FLEVDVDD-----------------------CQDVASESE   70 (105)
T ss_dssp             TTS-CEEEEEECTTCHHHHHH-HHHHHHHHHHSTT--SE-EEEEETTT-----------------------CHHHHHHTT
T ss_pred             CCC-eEEEEEECCCChhhHHH-HHHHHHHHHHccC--eE-EEEEEhhh-----------------------hHHHHHHcC
Confidence            566 57778999999999999 8999999888754  77 88887653                       345777887


Q ss_pred             CccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          154 LGKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      +..           .|+.+++++|+++....+.
T Consensus        71 v~~-----------~Pt~~~~~~g~~~~~~~g~   92 (105)
T 3m9j_A           71 VKS-----------MPTFQFFKKGQKVGEFSGA   92 (105)
T ss_dssp             CCB-----------SSEEEEEETTEEEEEEESS
T ss_pred             CCc-----------CcEEEEEECCeEEEEEeCC
Confidence            753           4666667899998887654

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.79  E-value=7.8e-09  Score=76.12  Aligned_cols=72  Identities=11%  Similarity=0.105  Sum_probs=53.5

Q ss_pred             CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCC
Q 028808           75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDL  154 (203)
Q Consensus        75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv  154 (203)
                      ++ .+|+.||++||++|... .|.|.++++++++. +. ++.|..|                       .+.++++.|++
T Consensus        35 ~~-~~lv~f~a~wC~~C~~~-~~~~~~~~~~~~~~-~~-~~~vd~~-----------------------~~~~l~~~~~v   87 (130)
T 2dml_A           35 DG-LWLVEFYAPWCGHCQRL-TPEWKKAATALKDV-VK-VGAVNAD-----------------------KHQSLGGQYGV   87 (130)
T ss_dssp             SS-CEEEEEECTTCSTTGGG-HHHHHHHHHHTTTT-SE-EEEEETT-----------------------TCHHHHHHHTC
T ss_pred             CC-eEEEEEECCCCHHHHhh-CHHHHHHHHHhcCc-eE-EEEEeCC-----------------------CCHHHHHHcCC
Confidence            45 67788999999999999 89999999888653 66 7777653                       34567888887


Q ss_pred             ccccccccCCCCcceEEEEEe-CCEEEEEEe
Q 028808          155 GKDLSAALLGPRSERWSAYVE-DGRIKALNV  184 (203)
Q Consensus       155 ~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~  184 (203)
                      ..           .|+.++++ +|+++....
T Consensus        88 ~~-----------~Pt~~~~~~~~~~~~~~~  107 (130)
T 2dml_A           88 QG-----------FPTIKIFGANKNKPEDYQ  107 (130)
T ss_dssp             CS-----------SSEEEEESSCTTSCEECC
T ss_pred             Cc-----------cCEEEEEeCCCCeEEEee
Confidence            53           47788888 666455544

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=98.27  E-value=6.5e-10  Score=82.13  Aligned_cols=85  Identities=11%  Similarity=0.099  Sum_probs=57.8

Q ss_pred             eeeecccccCCCeEEEEEeeCCCCCCCCccchhhH---HHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEE
Q 028808           65 ATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSY---KNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFY  141 (203)
Q Consensus        65 ~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l---~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpll  141 (203)
                      +.++++. .+|| ++|+.||++|||+|... .|.+   .++.+.+++ ++. ++.|..++.                   
T Consensus        10 ~~~~~~~-~~~k-~vlv~f~a~wC~~C~~~-~~~~~~~~~~~~~~~~-~~~-~~~vd~~~~-------------------   65 (130)
T 2lst_A           10 EALALAQ-AHGR-MVMVYFHSEHCPYCQQM-NTFVLSDPGVSRLLEA-RFV-VASVSVDTP-------------------   65 (130)
Confidence            5677777 3777 67778999999999998 7888   676666654 365 666665431                   


Q ss_pred             eeCCchHHHHcCCccccccccCCCCcceEEEEEe--CCEE--EEEEeec
Q 028808          142 GDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE--DGRI--KALNVEE  186 (203)
Q Consensus       142 sD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId--dG~I--~~~~~~~  186 (203)
                        .+.++++.||+..           .|+++++|  +|++  +....+.
T Consensus        66 --~~~~~~~~~~v~~-----------~Pt~~~~d~~~G~~~~~~~~~G~  101 (130)
T 2lst_A           66 --EGQELARRYRVPG-----------TPTFVFLVPKAGAWEEVGRLFGS  101 (130)
Confidence              2345666777642           46677886  5888  6666553

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=98.78  E-value=1.1e-08  Score=74.04  Aligned_cols=75  Identities=13%  Similarity=0.161  Sum_probs=56.2

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      .++ .+|+.|+++|||+|... .|.|.++.++++. ++. ++.|+.+.                       +.+++++||
T Consensus        29 ~~~-~~lv~f~~~~C~~C~~~-~~~~~~~~~~~~~-~~~-~~~v~~~~-----------------------~~~~~~~~~   81 (121)
T 2i1u_A           29 SNK-PVLVDFWATWCGPCKMV-APVLEEIATERAT-DLT-VAKLDVDT-----------------------NPETARNFQ   81 (121)
T ss_dssp             CSS-CEEEEEECTTCHHHHHH-HHHHHHHHHHTTT-TCE-EEEEETTT-----------------------CHHHHHHTT
T ss_pred             CCC-cEEEEEECCCCHHHHHH-HHHHHHHHHHhcC-CeE-EEEEECCC-----------------------CHHHHHhcC
Confidence            355 56778999999999999 8999999888864 477 88887653                       345777888


Q ss_pred             CccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          154 LGKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      +..           .|+.+++++|+++....+.
T Consensus        82 i~~-----------~Pt~~~~~~g~~~~~~~G~  103 (121)
T 2i1u_A           82 VVS-----------IPTLILFKDGQPVKRIVGA  103 (121)
T ss_dssp             CCS-----------SSEEEEEETTEEEEEEESC
T ss_pred             CCc-----------CCEEEEEECCEEEEEecCC
Confidence            753           3655555699998887654

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=98.78  E-value=7.3e-09  Score=75.88  Aligned_cols=74  Identities=14%  Similarity=0.151  Sum_probs=58.0

Q ss_pred             CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCC
Q 028808           75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDL  154 (203)
Q Consensus        75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv  154 (203)
                      |+ ++|+.||++|||+|... .|.|.++++++  .++. ++.|+.+.                       +.++++.||+
T Consensus        23 ~~-~vlv~f~a~wC~~C~~~-~~~l~~l~~~~--~~v~-~~~vd~~~-----------------------~~~~~~~~~i   74 (118)
T 2f51_A           23 PG-LVLVDFFATWCGPCQRL-GQILPSIAEAN--KDVT-FIKVDVDK-----------------------NGNAADAYGV   74 (118)
T ss_dssp             SS-CEEEEEECTTCHHHHHH-HHHHHHHHHHC--TTSE-EEEEETTT-----------------------CHHHHHHTTC
T ss_pred             CC-EEEEEEECCCCHHHHHH-HHHHHHHHHHC--CCeE-EEEEECCC-----------------------CHHHHHhcCC
Confidence            55 67778999999999998 89999988887  4677 88887754                       2457788887


Q ss_pred             ccccccccCCCCcceEEEEEeC----CEEEEEEeecC
Q 028808          155 GKDLSAALLGPRSERWSAYVED----GRIKALNVEEA  187 (203)
Q Consensus       155 ~~~~~~~g~~~~~~r~tfIIdd----G~I~~~~~~~~  187 (203)
                      ..           .|+.+++++    |+++....+..
T Consensus        75 ~~-----------~Pt~~~~~~~~~~G~~~~~~~G~~  100 (118)
T 2f51_A           75 SS-----------IPALFFVKKEGNEIKTLDQFVGAD  100 (118)
T ss_dssp             CS-----------SSEEEEEEEETTEEEEEEEEESCC
T ss_pred             CC-----------CCEEEEEeCCCCcceEEEeecCCC
Confidence            53           476777776    99999988753

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=98.78  E-value=1.1e-08  Score=71.90  Aligned_cols=73  Identities=14%  Similarity=0.272  Sum_probs=55.3

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      +|+ .+++.||++|||.|... .+.|.++.+++.  ++. ++.|+.+.                       +.++++.||
T Consensus        18 ~~~-~~~v~f~~~~C~~C~~~-~~~l~~~~~~~~--~~~-~~~v~~~~-----------------------~~~~~~~~~   69 (104)
T 2vim_A           18 KGR-LIVVDFFAQWCGPCRNI-APKVEALAKEIP--EVE-FAKVDVDQ-----------------------NEEAAAKYS   69 (104)
T ss_dssp             TTS-CEEEEEECTTCHHHHHH-HHHHHHHHHHCT--TSE-EEEEETTT-----------------------CHHHHHHTT
T ss_pred             CCC-eEEEEEECCCCHHHHHh-hHHHHHHHHHCC--CCE-EEEEeccC-----------------------CHHHHHHcC
Confidence            566 56778899999999998 899999888875  677 88887753                       345777888


Q ss_pred             CccccccccCCCCcceEEEEEeCCEEEEEEee
Q 028808          154 LGKDLSAALLGPRSERWSAYVEDGRIKALNVE  185 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~  185 (203)
                      +..           .|+.+++++|+++....+
T Consensus        70 v~~-----------~Pt~~~~~~g~~~~~~~G   90 (104)
T 2vim_A           70 VTA-----------MPTFVFIKDGKEVDRFSG   90 (104)
T ss_dssp             CCS-----------SSEEEEEETTEEEEEEES
T ss_pred             Ccc-----------ccEEEEEeCCcEEEEEeC
Confidence            753           365444459999988775

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=98.76  E-value=1.3e-08  Score=72.58  Aligned_cols=74  Identities=8%  Similarity=0.093  Sum_probs=55.6

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      +++ .+++.||++|||+|... .|.|+++++++.  ++. ++.|..|.                       +.++++.||
T Consensus        20 ~~~-~v~v~f~a~wC~~C~~~-~~~~~~~~~~~~--~~~-~~~vd~~~-----------------------~~~~~~~~~   71 (107)
T 1gh2_A           20 GSR-LAVVKFTMRGCGPCLRI-APAFSSMSNKYP--QAV-FLEVDVHQ-----------------------CQGTAATNN   71 (107)
T ss_dssp             TTS-CEEEEEECSSCHHHHHH-HHHHHHHHHHCT--TSE-EEEEETTT-----------------------SHHHHHHTT
T ss_pred             CCC-EEEEEEECCCChhhHHH-HHHHHHHHHHCC--CcE-EEEEECcc-----------------------CHHHHHhcC
Confidence            455 57778999999999999 899999888873  577 88887653                       245777787


Q ss_pred             CccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          154 LGKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      +..           .|+.+++.+|+++....+.
T Consensus        72 v~~-----------~Pt~~~~~~G~~~~~~~G~   93 (107)
T 1gh2_A           72 ISA-----------TPTFQFFRNKVRIDQYQGA   93 (107)
T ss_dssp             CCS-----------SSEEEEEETTEEEEEEESS
T ss_pred             CCc-----------ccEEEEEECCeEEEEEeCC
Confidence            753           4655555699999887763

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=98.76  E-value=1.3e-08  Score=74.08  Aligned_cols=78  Identities=12%  Similarity=0.133  Sum_probs=54.6

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      .|+ .+++.||++|||+|... .|.|.++++++.   .. ++.+..+.....                 |...++++.||
T Consensus        28 ~~~-~~~v~f~a~wC~~C~~~-~p~l~~~~~~~~---~~-v~~~~~~~~~~~-----------------~~~~~~~~~~~   84 (118)
T 1zma_A           28 KKE-TATFFIGRKTCPYCRKF-AGTLSGVVAETK---AH-IYFINSEEPSQL-----------------NDLQAFRSRYG   84 (118)
T ss_dssp             TTC-CEEEEEECTTCHHHHHH-HHHHHHHHHHHC---CC-CEEEETTCGGGH-----------------HHHHHHHHHHT
T ss_pred             CCC-eEEEEEECCCCccHHHH-HHHHHHHHHhcC---Ce-EEEEECCCcCcH-----------------HHHHHHHHHcC
Confidence            455 57788999999999999 899999887763   45 777777653211                 11234667777


Q ss_pred             CccccccccCCCCcceEEEEEeCCEEEEEEee
Q 028808          154 LGKDLSAALLGPRSERWSAYVEDGRIKALNVE  185 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~  185 (203)
                      +..           .|+.+++++|+++....+
T Consensus        85 i~~-----------~Pt~~~~~~G~~~~~~~G  105 (118)
T 1zma_A           85 IPT-----------VPGFVHITDGQINVRCDS  105 (118)
T ss_dssp             CCS-----------SCEEEEEETTEEEEECCT
T ss_pred             CCC-----------CCeEEEEECCEEEEEecC
Confidence            743           466677789998876543

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=98.76  E-value=6.7e-09  Score=84.38  Aligned_cols=75  Identities=12%  Similarity=0.242  Sum_probs=57.5

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      ++| +||+.||++||++|... +|.|++++++++++ +. ++.|+.|.                       +..++++||
T Consensus        29 ~~k-~vvv~F~a~wC~~C~~~-~p~l~~l~~~~~~~-v~-~~~vd~d~-----------------------~~~l~~~~~   81 (222)
T 3dxb_A           29 ADG-AILVDFWAEWCGPCKMI-APILDEIADEYQGK-LT-VAKLNIDQ-----------------------NPGTAPKYG   81 (222)
T ss_dssp             CSS-CEEEEEECTTCHHHHHH-HHHHHHHHHHTTTT-CE-EEEEETTT-----------------------CTTTGGGGT
T ss_pred             cCC-EEEEEEECCcCHHHHHH-HHHHHHHHHHhcCC-cE-EEEEECCC-----------------------CHHHHHHcC
Confidence            345 67788999999999999 99999999998754 77 88887653                       334667788


Q ss_pred             CccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          154 LGKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      +..           .|+.+++++|+++....+.
T Consensus        82 v~~-----------~Pt~~~~~~G~~~~~~~G~  103 (222)
T 3dxb_A           82 IRG-----------IPTLLLFKNGEVAATKVGA  103 (222)
T ss_dssp             CCS-----------BSEEEEEETTEEEEEEESC
T ss_pred             CCc-----------CCEEEEEECCeEEEEeccc
Confidence            753           4666666799999887754

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=98.76  E-value=1.2e-08  Score=73.40  Aligned_cols=73  Identities=21%  Similarity=0.357  Sum_probs=54.9

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      +|+ .+|+.||++|||+|... .|.|+++.++++  ++. ++.|+.|.                       +.++++.||
T Consensus        27 ~~~-~~vv~f~~~~C~~C~~~-~~~l~~~~~~~~--~~~-~~~v~~~~-----------------------~~~~~~~~~   78 (118)
T 2vm1_A           27 TGK-LVIIDFTASWCGPCRVI-APVFAEYAKKFP--GAI-FLKVDVDE-----------------------LKDVAEAYN   78 (118)
T ss_dssp             HTC-CEEEEEECTTCHHHHHH-HHHHHHHHHHCT--TSE-EEEEETTT-----------------------SHHHHHHTT
T ss_pred             CCC-EEEEEEECCCCHhHHHH-hHHHHHHHHHCC--CcE-EEEEEccc-----------------------CHHHHHHcC
Confidence            366 56778999999999998 899999888875  677 88887643                       356777888


Q ss_pred             CccccccccCCCCcceEEEEEeCCEEEEEEee
Q 028808          154 LGKDLSAALLGPRSERWSAYVEDGRIKALNVE  185 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~  185 (203)
                      +..           .|+.+++.+|+++....+
T Consensus        79 v~~-----------~Pt~~~~~~g~~~~~~~g   99 (118)
T 2vm1_A           79 VEA-----------MPTFLFIKDGEKVDSVVG   99 (118)
T ss_dssp             CCS-----------BSEEEEEETTEEEEEEES
T ss_pred             CCc-----------CcEEEEEeCCeEEEEecC
Confidence            753           355444459999988765

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=98.75  E-value=1.3e-08  Score=72.57  Aligned_cols=75  Identities=16%  Similarity=0.282  Sum_probs=56.9

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      .++ .+++.||++||++|... .|.+.++.+++.+ .+. ++.|..+.                       +.+++++||
T Consensus        21 ~~~-~vlv~f~a~~C~~C~~~-~~~~~~~~~~~~~-~v~-~~~vd~~~-----------------------~~~l~~~~~   73 (111)
T 3gnj_A           21 EGK-ACLVMFSRKNCHVCQKV-TPVLEELRLNYEE-SFG-FYYVDVEE-----------------------EKTLFQRFS   73 (111)
T ss_dssp             SCC-CEEEEEECSSCHHHHHH-HHHHHHHHHHTTT-TSE-EEEEETTT-----------------------CHHHHHHTT
T ss_pred             cCC-EEEEEEeCCCChhHHHH-HHHHHHHHHHcCC-ceE-EEEEECCc-----------------------ChhHHHhcC
Confidence            344 67778999999999998 8999999888865 376 88887643                       346777888


Q ss_pred             CccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          154 LGKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      +..           .|+.+++.+|+++....+.
T Consensus        74 v~~-----------~Pt~~~~~~g~~~~~~~g~   95 (111)
T 3gnj_A           74 LKG-----------VPQILYFKDGEYKGKMAGD   95 (111)
T ss_dssp             CCS-----------SCEEEEEETTEEEEEEESS
T ss_pred             CCc-----------CCEEEEEECCEEEEEEecc
Confidence            753           4666677899998877653

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=98.74  E-value=1.4e-08  Score=76.42  Aligned_cols=74  Identities=9%  Similarity=0.069  Sum_probs=55.9

Q ss_pred             CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCC
Q 028808           75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDL  154 (203)
Q Consensus        75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv  154 (203)
                      ++ .+|+.||++||++|... .|.|.+++++++++ +. ++.|..+.                       +.++++.||+
T Consensus        24 ~~-~vlv~F~a~wC~~C~~~-~~~l~~l~~~~~~~-v~-~~~vd~~~-----------------------~~~l~~~~~v   76 (140)
T 3hz4_A           24 KK-PVVVMFYSPACPYCKAM-EPYFEEYAKEYGSS-AV-FGRINIAT-----------------------NPWTAEKYGV   76 (140)
T ss_dssp             SS-CEEEEEECTTCHHHHHH-HHHHHHHHHHHTTT-SE-EEEEETTT-----------------------CHHHHHHHTC
T ss_pred             CC-cEEEEEECCCChhHHHH-HHHHHHHHHHhCCc-eE-EEEEECCc-----------------------CHhHHHHCCC
Confidence            45 67778999999999999 89999999998763 76 88787543                       3457778887


Q ss_pred             ccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          155 GKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       155 ~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      ..           .|+.+++.+|+++....+.
T Consensus        77 ~~-----------~Pt~~~~~~G~~~~~~~G~   97 (140)
T 3hz4_A           77 QG-----------TPTFKFFCHGRPVWEQVGQ   97 (140)
T ss_dssp             CE-----------ESEEEEEETTEEEEEEESS
T ss_pred             Cc-----------CCEEEEEeCCcEEEEEcCC
Confidence            53           4644445699998887664

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=98.71  E-value=2.5e-08  Score=74.03  Aligned_cols=72  Identities=7%  Similarity=0.128  Sum_probs=55.4

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      +++ .+|+.||++||++|... .|.|.++++++.  ++. ++.|..|.                       +.++++.||
T Consensus        36 ~~k-~vvv~F~a~wC~~C~~~-~p~l~~l~~~~~--~v~-~~~vd~d~-----------------------~~~l~~~~~   87 (125)
T 1r26_A           36 EDI-LTVAWFTAVWCGPCKTI-ERPMEKIAYEFP--TVK-FAKVDADN-----------------------NSEIVSKCR   87 (125)
T ss_dssp             SSS-CEEEEEECTTCHHHHHT-HHHHHHHHHHCT--TSE-EEEEETTT-----------------------CHHHHHHTT
T ss_pred             cCC-EEEEEEECCcCHhHHHH-HHHHHHHHHHCC--CCE-EEEEECCC-----------------------CHHHHHHcC
Confidence            455 57778999999999999 899999988873  577 88887753                       345788888


Q ss_pred             CccccccccCCCCcceEEEEEe-CCEEEEEEee
Q 028808          154 LGKDLSAALLGPRSERWSAYVE-DGRIKALNVE  185 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~  185 (203)
                      +..           .|+ |++. +|+++....+
T Consensus        88 v~~-----------~Pt-~~i~~~G~~~~~~~G  108 (125)
T 1r26_A           88 VLQ-----------LPT-FIIARSGKMLGHVIG  108 (125)
T ss_dssp             CCS-----------SSE-EEEEETTEEEEEEES
T ss_pred             CCc-----------ccE-EEEEeCCeEEEEEeC
Confidence            753           354 5554 9999988765

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=98.70  E-value=1.3e-08  Score=72.40  Aligned_cols=75  Identities=9%  Similarity=0.150  Sum_probs=53.1

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHc--CCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHH
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAK--GIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKS  151 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~--gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~  151 (203)
                      +++ .+|+.||++|||+|... .|.+.++.+++.+.  ++. ++.|..+                       .+.++++.
T Consensus        20 ~~~-~~lv~f~~~~C~~C~~~-~~~~~~~~~~~~~~~~~~~-~~~vd~~-----------------------~~~~l~~~   73 (111)
T 3uvt_A           20 AEG-ITFIKFYAPWCGHCKTL-APTWEELSKKEFPGLAGVK-IAEVDCT-----------------------AERNICSK   73 (111)
T ss_dssp             HSS-EEEEEEECSSCHHHHHH-HHHHHHHHTCCCCC-CCEE-EEEEETT-----------------------TCHHHHHH
T ss_pred             cCC-cEEEEEECCCChhHHHh-hHHHHHHHHHhhccCCceE-EEEEecc-----------------------ccHhHHHh
Confidence            455 67788999999999998 89999887776533  444 5556543                       23457778


Q ss_pred             cCCccccccccCCCCcceEEEEEeCCEEEEEEee
Q 028808          152 LDLGKDLSAALLGPRSERWSAYVEDGRIKALNVE  185 (203)
Q Consensus       152 yGv~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~  185 (203)
                      ||+..           .|+.+++.+|+++..+.+
T Consensus        74 ~~v~~-----------~Pt~~~~~~g~~~~~~~g   96 (111)
T 3uvt_A           74 YSVRG-----------YPTLLLFRGGKKVSEHSG   96 (111)
T ss_dssp             TTCCS-----------SSEEEEEETTEEEEEECS
T ss_pred             cCCCc-----------ccEEEEEeCCcEEEeccC
Confidence            88753           465555569999887754

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=98.70  E-value=4.7e-08  Score=72.25  Aligned_cols=75  Identities=11%  Similarity=0.223  Sum_probs=52.7

Q ss_pred             CCCeEEEEEeeCCCCC--------------CCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceE
Q 028808           74 KGKKVVIFGLPGAYTG--------------VCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIE  139 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp--------------~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fp  139 (203)
                      .|| .+|+.||++|||              +|... .|.|+++++++++ .+. ++.|..|.                  
T Consensus        20 ~~k-~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~-~p~~~~l~~~~~~-~~~-~~~vd~d~------------------   77 (123)
T 1oaz_A           20 ADG-AILVDFWAEWCGPIEESDDRRYDLVGPCKMI-APILDEIADEYQG-KLT-VAKLNIDQ------------------   77 (123)
T ss_dssp             CSS-EEEEEEECSSCSCBSSSTTSCCSCCCCCCTT-HHHHTTC--------CE-EEEEETTS------------------
T ss_pred             CCC-eEEEEEECCCCccccccccccccCCCCcHHH-HHHHHHHHHHhcC-CeE-EEEEECCC------------------
Confidence            455 677889999999              99999 8999999888875 376 88887653                  


Q ss_pred             EEeeCCchHHHHcCCccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          140 FYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       140 llsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                           +.+++++||+..           .|+.+++.+|+++....+.
T Consensus        78 -----~~~l~~~~~v~~-----------~Pt~~~~~~G~~~~~~~G~  108 (123)
T 1oaz_A           78 -----NPGTAPKYGIRG-----------IPTLLLFKNGEVAATKVGA  108 (123)
T ss_dssp             -----CTTTGGGGTCCB-----------SSEEEEEESSSEEEEEESC
T ss_pred             -----CHHHHHHcCCCc-----------cCEEEEEECCEEEEEEeCC
Confidence                 345778888853           4667777899998877653

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=98.69  E-value=1.1e-08  Score=73.45  Aligned_cols=70  Identities=17%  Similarity=0.322  Sum_probs=50.8

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcC--CcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHH
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKG--IDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKS  151 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~g--v~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~  151 (203)
                      +++ .+++.||++|||+|... .|.|.++++++++.+  +. ++.|..+                       .+.++++.
T Consensus        23 ~~~-~~lv~f~~~~C~~C~~~-~~~~~~~~~~~~~~~~~v~-~~~vd~~-----------------------~~~~~~~~   76 (120)
T 1mek_A           23 AHK-YLLVEFYAPWCGHCKAL-APEYAKAAGKLKAEGSEIR-LAKVDAT-----------------------EESDLAQQ   76 (120)
T ss_dssp             HCS-EEEEEEECSSCSTTSTT-HHHHHHHHHTTTTTCCCCB-CEEEETT-----------------------TCCSSHHH
T ss_pred             cCC-eEEEEEECCCCHHHHHh-hHHHHHHHHHHhccCCcEE-EEEEcCC-----------------------CCHHHHHH
Confidence            455 67788999999999999 899999998887644  44 4444443                       23467788


Q ss_pred             cCCccccccccCCCCcceEEEEEeCCEEE
Q 028808          152 LDLGKDLSAALLGPRSERWSAYVEDGRIK  180 (203)
Q Consensus       152 yGv~~~~~~~g~~~~~~r~tfIIddG~I~  180 (203)
                      ||+..           .|+.+++.+|+++
T Consensus        77 ~~v~~-----------~Pt~~~~~~g~~~   94 (120)
T 1mek_A           77 YGVRG-----------YPTIKFFRNGDTA   94 (120)
T ss_dssp             HTCCS-----------SSEEEEEESSCSS
T ss_pred             CCCCc-----------ccEEEEEeCCCcC
Confidence            88753           4667777888765

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=98.68  E-value=2.8e-08  Score=74.43  Aligned_cols=75  Identities=12%  Similarity=0.132  Sum_probs=56.8

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      ++++ +|+.||++|||+|... .|.|+++++++.+ ++. ++.|+.+.                       +.++++.||
T Consensus        49 ~~~~-vvv~f~~~~C~~C~~~-~~~l~~l~~~~~~-~v~-~~~vd~~~-----------------------~~~l~~~~~  101 (140)
T 1v98_A           49 GAPL-TLVDFFAPWCGPCRLV-SPILEELARDHAG-RLK-VVKVNVDE-----------------------HPGLAARYG  101 (140)
T ss_dssp             CCCE-EEEEEECTTCHHHHHH-HHHHHHHHHHTTT-TEE-EEEEETTT-----------------------CHHHHHHTT
T ss_pred             cCCC-EEEEEECCCCHHHHHH-HHHHHHHHHHccC-ceE-EEEEECCC-----------------------CHHHHHHCC
Confidence            4455 7888999999999999 8999999988864 366 88887653                       235777888


Q ss_pred             CccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          154 LGKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      +..           .|+.+++.+|+++..+.+.
T Consensus       102 v~~-----------~Pt~~~~~~G~~~~~~~G~  123 (140)
T 1v98_A          102 VRS-----------VPTLVLFRRGAPVATWVGA  123 (140)
T ss_dssp             CCS-----------SSEEEEEETTEEEEEEESC
T ss_pred             CCc-----------cCEEEEEeCCcEEEEEeCC
Confidence            753           4656666799999887754

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=98.68  E-value=2.2e-08  Score=80.99  Aligned_cols=70  Identities=16%  Similarity=0.278  Sum_probs=54.0

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcC--CcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHH
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKG--IDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKS  151 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~g--v~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~  151 (203)
                      +|+ ++++.||++||++|... +|.|.++++++++.+  +. ++.|..+                       .+.+++++
T Consensus        31 ~~~-~v~v~F~a~wC~~C~~~-~p~~~~~~~~~~~~~~~~~-~~~vd~~-----------------------~~~~l~~~   84 (241)
T 3idv_A           31 DKD-TVLLEFYAPWCGHCKQF-APEYEKIANILKDKDPPIP-VAKIDAT-----------------------SASVLASR   84 (241)
T ss_dssp             TCS-EEEEEEECTTCHHHHHH-HHHHHHHHHHHHTSSSCCC-EEEEETT-----------------------TCHHHHHH
T ss_pred             cCC-eEEEEEECCCCHHHHHh-hHHHHHHHHHHhhcCCceE-EEEEecc-----------------------CCHHHHHh
Confidence            455 68889999999999999 899999999998776  66 6667553                       23467788


Q ss_pred             cCCccccccccCCCCcceEEEEEeCCEEE
Q 028808          152 LDLGKDLSAALLGPRSERWSAYVEDGRIK  180 (203)
Q Consensus       152 yGv~~~~~~~g~~~~~~r~tfIIddG~I~  180 (203)
                      ||+..           .|+.+++++|+++
T Consensus        85 ~~v~~-----------~Pt~~~~~~g~~~  102 (241)
T 3idv_A           85 FDVSG-----------YPTIKILKKGQAV  102 (241)
T ss_dssp             TTCCS-----------SSEEEEEETTEEE
T ss_pred             cCCCc-----------CCEEEEEcCCCcc
Confidence            88753           4666677777766

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=98.67  E-value=7.3e-09  Score=75.44  Aligned_cols=72  Identities=11%  Similarity=0.065  Sum_probs=52.9

Q ss_pred             CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCC
Q 028808           75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDL  154 (203)
Q Consensus        75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv  154 (203)
                      ++ .+|+.||++||++|... .|.|+++++++.+ ++. ++.|..+.                       +.++++.||+
T Consensus        21 ~~-~~lv~f~a~~C~~C~~~-~~~~~~~~~~~~~-~~~-~~~vd~~~-----------------------~~~~~~~~~v   73 (122)
T 3aps_A           21 KT-HWVVDFYAPWCGPCQNF-APEFELLARMIKG-KVR-AGKVDCQA-----------------------YPQTCQKAGI   73 (122)
T ss_dssp             SS-CEEEEEECTTCHHHHHH-HHHHHHHHHHHTT-TCE-EEEEETTT-----------------------CHHHHHHTTC
T ss_pred             CC-eEEEEEECCCCHHHHHH-HHHHHHHHHHhcC-CeE-EEEEeCcC-----------------------CHHHHHHcCC
Confidence            44 67788999999999999 8999999998875 577 88887764                       2356777877


Q ss_pred             ccccccccCCCCcceEEEEEe-CCEEEEEEee
Q 028808          155 GKDLSAALLGPRSERWSAYVE-DGRIKALNVE  185 (203)
Q Consensus       155 ~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~  185 (203)
                      ..           .|+.++++ +|+ +....+
T Consensus        74 ~~-----------~Pt~~~~~~~~~-~~~~~g   93 (122)
T 3aps_A           74 KA-----------YPSVKLYQYERA-KKSIWE   93 (122)
T ss_dssp             CS-----------SSEEEEEEEEGG-GTEEEE
T ss_pred             Cc-----------cceEEEEeCCCc-cceeec
Confidence            42           47777887 555 334444

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=98.11  E-value=2.5e-09  Score=75.10  Aligned_cols=75  Identities=13%  Similarity=0.228  Sum_probs=52.8

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      .++ .+++.|+++|||.|... .+.++++.+++.+ ++. ++.|+.|.                       +.++++.||
T Consensus        18 ~~~-~~~v~f~~~~C~~C~~~-~~~~~~~~~~~~~-~~~-~~~v~~~~-----------------------~~~~~~~~~   70 (106)
T 2yj7_A           18 SDK-PVLVDFWAPWCGPCRMI-APIIEELAKEYEG-KVK-VVKVNVDE-----------------------NPNTAAQYG   70 (106)
Confidence            344 57778899999999998 8999998888864 366 66665532                       234566677


Q ss_pred             CccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          154 LGKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      +..           .|+.+++.+|+++..+.+.
T Consensus        71 v~~-----------~Pt~~~~~~g~~~~~~~g~   92 (106)
T 2yj7_A           71 IRS-----------IPTLLLFKNGQVVDRLVGA   92 (106)
Confidence            643           3555666788888776653

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=98.66  E-value=8.4e-08  Score=77.12  Aligned_cols=76  Identities=9%  Similarity=-0.112  Sum_probs=56.1

Q ss_pred             CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHc---CCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHH
Q 028808           75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAK---GIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKS  151 (203)
Q Consensus        75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~---gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~  151 (203)
                      +++++++.||++|||+|... .|.+++++++++++   ++. ++.|..+                       .+.++++.
T Consensus       133 ~~~~~~v~F~a~wC~~C~~~-~p~~~~l~~~~~~~~~~~v~-~~~vd~~-----------------------~~~~l~~~  187 (226)
T 1a8l_A          133 DQDVRILVFVTPTCPYCPLA-VRMAHKFAIENTKAGKGKIL-GDMVEAI-----------------------EYPEWADQ  187 (226)
T ss_dssp             CSCEEEEEEECSSCTTHHHH-HHHHHHHHHHHHHTTCCCEE-EEEEEGG-----------------------GCHHHHHH
T ss_pred             CCCcEEEEEeCCCCCccHHH-HHHHHHHHHhcccccCCcEE-EEEEEcc-----------------------cCHHHHHh
Confidence            34566889999999999999 89999999999853   455 6666553                       23457788


Q ss_pred             cCCccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          152 LDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       152 yGv~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      ||+..           .|+.+++.+|+++..+.+.
T Consensus       188 ~~v~~-----------~Pt~~~~~~G~~~~~~~G~  211 (226)
T 1a8l_A          188 YNVMA-----------VPKIVIQVNGEDRVEFEGA  211 (226)
T ss_dssp             TTCCS-----------SCEEEEEETTEEEEEEESC
T ss_pred             CCCcc-----------cCeEEEEeCCceeEEEcCC
Confidence            88853           4654545599988877654

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.63  E-value=1.3e-08  Score=75.22  Aligned_cols=42  Identities=19%  Similarity=0.353  Sum_probs=33.0

Q ss_pred             CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHc-CCcEEEEEec
Q 028808           75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAK-GIDSVICVAV  119 (203)
Q Consensus        75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~-gv~~vi~IS~  119 (203)
                      ++ .+|+.||++|||+|... .|.|.+++++++.. ++. ++.|..
T Consensus        25 ~~-~vlv~f~a~wC~~C~~~-~p~~~~~~~~~~~~~~~~-~~~vd~   67 (133)
T 2dj3_A           25 KK-DVLIEFYAPWCGHCKQL-EPIYTSLGKKYKGQKDLV-IAKMDA   67 (133)
T ss_dssp             TS-EEEEEECCTTCSHHHHH-HHHHHHHHHHHTTSSSEE-EEEECT
T ss_pred             CC-cEEEEEECCCChhHHHH-HHHHHHHHHHhcCCCCEE-EEEecC
Confidence            55 67888999999999999 89999999999753 344 544544

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=98.61  E-value=5.7e-08  Score=65.90  Aligned_cols=39  Identities=15%  Similarity=0.154  Sum_probs=32.6

Q ss_pred             EEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC
Q 028808           79 VIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN  120 (203)
Q Consensus        79 VL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d  120 (203)
                      .|+.||++|||+|... .|.|+++++++.+ ++. ++.|..|
T Consensus         4 ~vv~f~~~~C~~C~~~-~~~l~~~~~~~~~-~~~-~~~vd~~   42 (85)
T 1nho_A            4 NIEVFTSPTCPYCPMA-IEVVDEAKKEFGD-KID-VEKIDIM   42 (85)
T ss_dssp             CEEEESCSSSCCSTTH-HHHHHHHHHHHCS-SCC-EEEECTT
T ss_pred             EEEEEECCCCcchHHH-HHHHHHHHHHhcC-CeE-EEEEECC
Confidence            4678999999999999 8999999888864 577 8888764

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=98.59  E-value=4.4e-08  Score=75.00  Aligned_cols=74  Identities=12%  Similarity=0.107  Sum_probs=56.8

Q ss_pred             EEEEEeeCCCC--CCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCc
Q 028808           78 VVIFGLPGAYT--GVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLG  155 (203)
Q Consensus        78 vVL~~f~~~~c--p~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~  155 (203)
                      .||++||++||  ++|..- .|-|.++.++|..+ +. ++-|.+                       |.+.+++.+||+.
T Consensus        35 ~vlVdF~A~wCr~gpCk~i-aPvleela~e~~~~-v~-~~KVdv-----------------------De~~~la~~ygV~   88 (137)
T 2qsi_A           35 IVVLFFRGDAVRFPEAADL-AVVLPELINAFPGR-LV-AAEVAA-----------------------EAERGLMARFGVA   88 (137)
T ss_dssp             EEEEEECCCTTTCTTHHHH-HHHHHHHHHTSTTT-EE-EEEECG-----------------------GGHHHHHHHHTCC
T ss_pred             cEEEEEeCCccCCCchhhH-HhHHHHHHHHccCC-cE-EEEEEC-----------------------CCCHHHHHHcCCc
Confidence            68889999999  999998 89999999888643 44 555544                       4455677888875


Q ss_pred             cccccccCCCCcceEEEEEeCCEEEEEEeecCC
Q 028808          156 KDLSAALLGPRSERWSAYVEDGRIKALNVEEAP  188 (203)
Q Consensus       156 ~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~~~  188 (203)
                                 ++|+.++..||+++...++..+
T Consensus        89 -----------siPTlilFkdG~~v~~~vG~~~  110 (137)
T 2qsi_A           89 -----------VCPSLAVVQPERTLGVIAKIQD  110 (137)
T ss_dssp             -----------SSSEEEEEECCEEEEEEESCCC
T ss_pred             -----------cCCEEEEEECCEEEEEEeCCCC
Confidence                       3576666689999999988643

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=98.59  E-value=2.6e-08  Score=84.94  Aligned_cols=72  Identities=8%  Similarity=0.171  Sum_probs=53.6

Q ss_pred             CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCC
Q 028808           75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDL  154 (203)
Q Consensus        75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv  154 (203)
                      ++ +||+.||++||++|... +|.|.++++++++. +. ++.|.+|.                     +.+.++++.||+
T Consensus        35 ~~-~vlV~F~A~wC~~C~~~-~p~~~~la~~~~~~-~~-~~~v~~d~---------------------~~~~~l~~~~~I   89 (298)
T 3ed3_A           35 NY-TSLVEFYAPWCGHCKKL-SSTFRKAAKRLDGV-VQ-VAAVNCDL---------------------NKNKALCAKYDV   89 (298)
T ss_dssp             SS-CEEEEEECTTCHHHHHH-HHHHHHHHHHTTTT-SE-EEEEETTS---------------------TTTHHHHHHTTC
T ss_pred             CC-eEEEEEECCCCHHHHHH-HHHHHHHHHHccCC-cE-EEEEEccC---------------------ccCHHHHHhCCC
Confidence            44 67889999999999999 99999999998754 76 88898873                     225667888887


Q ss_pred             ccccccccCCCCcceEEEEEeCCEEEEE
Q 028808          155 GKDLSAALLGPRSERWSAYVEDGRIKAL  182 (203)
Q Consensus       155 ~~~~~~~g~~~~~~r~tfIIddG~I~~~  182 (203)
                      ..           .|+.+++++|+++..
T Consensus        90 ~~-----------~Pt~~~~~~g~~v~~  106 (298)
T 3ed3_A           90 NG-----------FPTLMVFRPPKIDLS  106 (298)
T ss_dssp             CB-----------SSEEEEEECCCC---
T ss_pred             Cc-----------cceEEEEECCceeec
Confidence            53           466777777765443

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=98.56  E-value=7e-09  Score=76.11  Aligned_cols=72  Identities=22%  Similarity=0.312  Sum_probs=52.5

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      +|+ .+|+.||++|||.|... .|.|+++.++++  ++. ++.|+.|.                       +.++++.||
T Consensus        35 ~~~-~~vv~f~~~~C~~C~~~-~~~l~~~~~~~~--~v~-~~~v~~~~-----------------------~~~~~~~~~   86 (130)
T 1wmj_A           35 AGK-VVIIDFTASWCGPCRFI-APVFAEYAKKFP--GAV-FLKVDVDE-----------------------LKEVAEKYN   86 (130)
T ss_dssp             TTC-BCBEECCSSSCSCSSSS-HHHHHHHHHHCT--TBC-CEECCTTT-----------------------SGGGHHHHT
T ss_pred             cCC-EEEEEEECCCChhHHHH-HHHHHHHHHHCC--CCE-EEEEeccc-----------------------hHHHHHHcC
Confidence            466 56778999999999999 899999888875  577 77776642                       346777888


Q ss_pred             CccccccccCCCCcceEEEEEe-CCEEEEEEee
Q 028808          154 LGKDLSAALLGPRSERWSAYVE-DGRIKALNVE  185 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~  185 (203)
                      +..           .|+ +++. +|+++....+
T Consensus        87 v~~-----------~Pt-~~~~~~g~~~~~~~g  107 (130)
T 1wmj_A           87 VEA-----------MPT-FLFIKDGAEADKVVG  107 (130)
T ss_dssp             CCS-----------SCC-CCBCTTTTCCBCCCT
T ss_pred             CCc-----------cce-EEEEeCCeEEEEEeC
Confidence            753           343 4554 8888766554

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=98.55  E-value=1.3e-07  Score=64.06  Aligned_cols=40  Identities=13%  Similarity=0.138  Sum_probs=32.9

Q ss_pred             EEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC
Q 028808           78 VVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN  120 (203)
Q Consensus        78 vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d  120 (203)
                      ++|+.||++|||+|... .|.|+++++++.+ ++. ++.|..+
T Consensus         4 ~~vv~f~~~~C~~C~~~-~~~l~~~~~~~~~-~~~-~~~vd~~   43 (85)
T 1fo5_A            4 VKIELFTSPMCPHCPAA-KRVVEEVANEMPD-AVE-VEYINVM   43 (85)
T ss_dssp             EEEEEEECCCSSCCCTH-HHHHHHHHHHCSS-SEE-EEEEESS
T ss_pred             eEEEEEeCCCCCchHHH-HHHHHHHHHHcCC-ceE-EEEEECC
Confidence            56788999999999999 8999998887753 466 7778775

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=98.51  E-value=1.2e-07  Score=74.30  Aligned_cols=71  Identities=11%  Similarity=0.128  Sum_probs=52.5

Q ss_pred             CeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCc
Q 028808           76 KKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLG  155 (203)
Q Consensus        76 k~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~  155 (203)
                      .++||+.||++||++|..- -|-|.++.++++++ +. ++-|.+|.                       ..+++..||+.
T Consensus        41 ~k~VVVdF~A~WCgPCk~m-~PvleelA~e~~~~-v~-f~kVDVDe-----------------------~~e~a~~y~V~   94 (160)
T 2av4_A           41 ERLVCIRFGHDYDPDCMKM-DELLYKVADDIKNF-CV-IYLVDITE-----------------------VPDFNTMYELY   94 (160)
T ss_dssp             SSEEEEEEECTTSHHHHHH-HHHHHHHHHHHTTT-EE-EEEEETTT-----------------------CCTTTTTTTCC
T ss_pred             CCEEEEEEECCCChhHHHH-HHHHHHHHHHccCC-cE-EEEEECCC-----------------------CHHHHHHcCCC
Confidence            3478899999999999998 89999999998643 44 66665543                       34577788885


Q ss_pred             cccccccCCCCcceEEEEEeCCEEEEEE
Q 028808          156 KDLSAALLGPRSERWSAYVEDGRIKALN  183 (203)
Q Consensus       156 ~~~~~~g~~~~~~r~tfIIddG~I~~~~  183 (203)
                      .           .|+.++..+|+.+.+.
T Consensus        95 s-----------iPT~~fFk~G~~v~vd  111 (160)
T 2av4_A           95 D-----------PVSVMFFYRNKHMMID  111 (160)
T ss_dssp             S-----------SEEEEEEETTEEEEEE
T ss_pred             C-----------CCEEEEEECCEEEEEe
Confidence            3           4655456699887644

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=98.50  E-value=7.6e-08  Score=73.92  Aligned_cols=74  Identities=8%  Similarity=-0.053  Sum_probs=55.4

Q ss_pred             EEEEEeeCCC--CCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCc
Q 028808           78 VVIFGLPGAY--TGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLG  155 (203)
Q Consensus        78 vVL~~f~~~~--cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~  155 (203)
                      .||++||++|  |++|..- .|-|.++.++|.++.+. ++-|.+                       |.+.+++.+|||.
T Consensus        36 ~vlVdF~a~~crCgpCk~i-aPvleela~e~~g~~v~-~~KVdv-----------------------De~~~lA~~ygV~   90 (140)
T 2qgv_A           36 DGVVLLSSDPKRTPEVSDN-PVMIGELLHEFPDYTWQ-VAIADL-----------------------EQSEAIGDRFGAF   90 (140)
T ss_dssp             SEEEEECCCTTTCTTTTHH-HHHHHHHHTTCTTSCCE-EEECCH-----------------------HHHHHHHHHHTCC
T ss_pred             CEEEEEeCCcccCCcHHHH-HhHHHHHHHHcCCCeEE-EEEEEC-----------------------CCCHHHHHHcCCc
Confidence            3566999999  9999998 89999999888653355 665544                       3345677788774


Q ss_pred             cccccccCCCCcceEEEEEeCCEEEEEEeecC
Q 028808          156 KDLSAALLGPRSERWSAYVEDGRIKALNVEEA  187 (203)
Q Consensus       156 ~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~~  187 (203)
                                 ++|+.++..||+++...+|..
T Consensus        91 -----------sIPTlilFk~G~~v~~~~G~~  111 (140)
T 2qgv_A           91 -----------RFPATLVFTGGNYRGVLNGIH  111 (140)
T ss_dssp             -----------SSSEEEEEETTEEEEEEESCC
T ss_pred             -----------cCCEEEEEECCEEEEEEecCC
Confidence                       357666667999999998754

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=98.49  E-value=5.4e-08  Score=78.13  Aligned_cols=74  Identities=9%  Similarity=0.120  Sum_probs=54.9

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      +|+ ++|+.||++||++|... .|.+.++++++++ .+. ++.|..+.                       +.++++.||
T Consensus       113 ~~~-~vlv~F~a~wC~~C~~~-~p~~~~l~~~~~~-~v~-~~~vd~~~-----------------------~~~l~~~~~  165 (210)
T 3apq_A          113 SGE-LWFVNFYSPGCSHCHDL-APTWREFAKEVDG-LLR-IGAVNCGD-----------------------DRMLCRMKG  165 (210)
T ss_dssp             HSC-CEEEEEECTTCHHHHHH-HHHHHHHHHHTBT-TBE-EEEEETTT-----------------------CHHHHHHTT
T ss_pred             cCC-cEEEEEeCCCChhHHHH-HHHHHHHHHHhcC-ceE-EEEEECCc-----------------------cHHHHHHcC
Confidence            566 67788999999999999 8999999988864 366 77776543                       235777787


Q ss_pred             CccccccccCCCCcceEEEEEeCCEEEEEEee
Q 028808          154 LGKDLSAALLGPRSERWSAYVEDGRIKALNVE  185 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~  185 (203)
                      +..           .|+.+++.+|+++....+
T Consensus       166 v~~-----------~Pt~~~~~~G~~~~~~~G  186 (210)
T 3apq_A          166 VNS-----------YPSLFIFRSGMAAVKYNG  186 (210)
T ss_dssp             CCS-----------SSEEEEECTTSCCEECCS
T ss_pred             CCc-----------CCeEEEEECCCceeEecC
Confidence            753           465666668988776654

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=98.48  E-value=7.2e-08  Score=80.45  Aligned_cols=88  Identities=5%  Similarity=-0.021  Sum_probs=60.4

Q ss_pred             CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCC
Q 028808           75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDL  154 (203)
Q Consensus        75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv  154 (203)
                      |+ +||+.||++||++|... .|.|.+++.+|.  ++. ++.|..+.          ..              +++.|++
T Consensus       133 ~k-~VvV~Fya~wC~~Ck~l-~p~l~~La~~~~--~v~-f~kVd~d~----------~~--------------l~~~~~I  183 (245)
T 1a0r_P          133 IT-TIVVHIYEDGIKGCDAL-NSSLICLAAEYP--MVK-FCKIKASN----------TG--------------AGDRFSS  183 (245)
T ss_dssp             TC-EEEEEEECTTSTTHHHH-HHHHHHHHHHCT--TSE-EEEEEHHH----------HC--------------CTTSSCT
T ss_pred             CC-EEEEEEECCCChHHHHH-HHHHHHHHHHCC--CCE-EEEEeCCc----------HH--------------HHHHCCC
Confidence            55 67889999999999999 899999999885  477 88886632          11              2335666


Q ss_pred             ccccccccCCCCcceEEEEEeCCEEEEEEeecCC--C-CcccCCHHHHHhc
Q 028808          155 GKDLSAALLGPRSERWSAYVEDGRIKALNVEEAP--S-KMKVSGGDVILGQ  202 (203)
Q Consensus       155 ~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~~~--~-~~~~~~a~~vL~~  202 (203)
                      .           ..|+.+++.+|+++...++...  + .++..+.+.+|+.
T Consensus       184 ~-----------~~PTll~~~~G~~v~~~vG~~~~~g~~~~~e~Le~~L~~  223 (245)
T 1a0r_P          184 D-----------VLPTLLVYKGGELLSNFISVTEQLAEEFFTGDVESFLNE  223 (245)
T ss_dssp             T-----------TCSEEEEEETTEEEEEETTGGGGSCTTCCHHHHHHHHHT
T ss_pred             C-----------CCCEEEEEECCEEEEEEeCCcccccccccHHHHHHHHHH
Confidence            3           3476666669999999887632  1 1233345555543

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=98.47  E-value=8.5e-07  Score=71.52  Aligned_cols=70  Identities=14%  Similarity=0.321  Sum_probs=53.1

Q ss_pred             CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcC--CcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHc
Q 028808           75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKG--IDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSL  152 (203)
Q Consensus        75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~g--v~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~y  152 (203)
                      ++ ++++.||++||++|... .|.+.++++++++++  +. ++.|..+.                       +.+++++|
T Consensus       147 ~~-~~~v~f~a~wC~~C~~~-~p~~~~~a~~~~~~~~~v~-~~~vd~~~-----------------------~~~l~~~~  200 (241)
T 3idv_A          147 AD-IILVEFYAPWCGHCKKL-APEYEKAAKELSKRSPPIP-LAKVDATA-----------------------ETDLAKRF  200 (241)
T ss_dssp             CS-EEEEEEECTTCTGGGGT-HHHHHHHHHHHHTSSSCCC-EEEEETTT-----------------------CHHHHHHT
T ss_pred             CC-eEEEEEECCCCHHHHHh-HHHHHHHHHHHhccCCcEE-EEEEECCC-----------------------CHHHHHHc
Confidence            44 67889999999999999 899999999998754  66 66665543                       34577888


Q ss_pred             CCccccccccCCCCcceEEEEEeCCEEEE
Q 028808          153 DLGKDLSAALLGPRSERWSAYVEDGRIKA  181 (203)
Q Consensus       153 Gv~~~~~~~g~~~~~~r~tfIIddG~I~~  181 (203)
                      |+..           .|+.+++++|+++.
T Consensus       201 ~v~~-----------~Pt~~~~~~g~~~~  218 (241)
T 3idv_A          201 DVSG-----------YPTLKIFRKGRPYD  218 (241)
T ss_dssp             TCCS-----------SSEEEEEETTEEEE
T ss_pred             CCcc-----------cCEEEEEECCeEEE
Confidence            8752           46666667888765

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=98.44  E-value=3e-08  Score=76.86  Aligned_cols=92  Identities=8%  Similarity=-0.011  Sum_probs=57.3

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHH-cCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHc
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKA-KGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSL  152 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~-~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~y  152 (203)
                      .|| .||+.||++||++|... .|.+.+. +++.+ .+.. ++.|.+|+.           .           ...+..|
T Consensus        43 ~~K-pVlV~F~A~WC~~Ck~m-~p~~~~~-~~~~~~~~~~-fv~V~vD~e-----------~-----------~~~~~~~   96 (151)
T 3ph9_A           43 SKK-PLMVIHHLEDCQYSQAL-KKVFAQN-EEIQEMAQNK-FIMLNLMHE-----------T-----------TDKNLSP   96 (151)
T ss_dssp             HTC-CEEEEECCTTCHHHHHH-HHHHHHC-HHHHHHHHHT-CEEEEESSC-----------C-----------SCGGGCT
T ss_pred             cCC-cEEEEEECCCCHhHHHH-HHHHhcC-HHHHHHhhcC-eEEEEecCC-----------c-----------hhhHhhc
Confidence            566 57778999999999987 6777764 22221 1124 556666521           0           0123344


Q ss_pred             CCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCC---cccCCHHHHHhc
Q 028808          153 DLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSK---MKVSGGDVILGQ  202 (203)
Q Consensus       153 Gv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~---~~~~~a~~vL~~  202 (203)
                      ++.           ..|+++++| +|++++..+|.....   +...+.+++|+.
T Consensus        97 ~v~-----------~~PT~~f~~~~G~~v~~~~G~~~~~~~~~~~~~~~~ll~~  139 (151)
T 3ph9_A           97 DGQ-----------YVPRIMFVDPSLTVRADIAGRYSNRLYTYEPRDLPLLIEN  139 (151)
T ss_dssp             TCC-----------CSSEEEEECTTSCBCTTCCCSCTTSTTCCCGGGHHHHHHH
T ss_pred             CCC-----------CCCEEEEECCCCCEEEEEeCCcCCcccccchhhHHHHHHH
Confidence            442           358888999 999999888753221   345677777765

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.44  E-value=9.2e-08  Score=71.80  Aligned_cols=69  Identities=13%  Similarity=0.036  Sum_probs=51.4

Q ss_pred             EEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccc
Q 028808           78 VVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKD  157 (203)
Q Consensus        78 vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~  157 (203)
                      .||+.||++||++|... .|.|.++++++.  ++. ++.|..+...                          +.|++.  
T Consensus        32 ~vvv~f~a~wC~~C~~~-~p~l~~la~~~~--~v~-~~~vd~~~~~--------------------------~~~~i~--   79 (135)
T 2dbc_A           32 WVVIHLYRSSVPMCLVV-NQHLSVLARKFP--ETK-FVKAIVNSCI--------------------------EHYHDN--   79 (135)
T ss_dssp             EEEEEECCTTCHHHHHH-HHHHHHHHHHCS--SEE-EEEECCSSSC--------------------------SSCCSS--
T ss_pred             EEEEEEECCCChHHHHH-HHHHHHHHHHCC--CcE-EEEEEhhcCc--------------------------ccCCCC--
Confidence            67889999999999999 899999888773  455 7777665420                          345553  


Q ss_pred             cccccCCCCcceEEEEEeCCEEEEEEeecC
Q 028808          158 LSAALLGPRSERWSAYVEDGRIKALNVEEA  187 (203)
Q Consensus       158 ~~~~g~~~~~~r~tfIIddG~I~~~~~~~~  187 (203)
                               ..|+.+++++|+++...++..
T Consensus        80 ---------~~Pt~~~~~~G~~v~~~~G~~  100 (135)
T 2dbc_A           80 ---------CLPTIFVYKNGQIEGKFIGII  100 (135)
T ss_dssp             ---------CCSEEEEESSSSCSEEEESTT
T ss_pred             ---------CCCEEEEEECCEEEEEEEeEE
Confidence                     347666667999999888763

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=98.41  E-value=2.4e-07  Score=75.94  Aligned_cols=42  Identities=12%  Similarity=0.247  Sum_probs=35.7

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHHHH--cCCcEEEEEecC
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKA--KGIDSVICVAVN  120 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~--~gv~~vi~IS~d  120 (203)
                      +++|+.||++||++|... .|.+.++++++++  .++. ++.|+++
T Consensus        31 ~~vlv~F~a~wC~~C~~~-~p~~~~l~~~~~~~~~~v~-~~~vd~~   74 (244)
T 3q6o_A           31 SAWAVEFFASWCGHCIAF-APTWXALAEDVKAWRPALY-LAALDCA   74 (244)
T ss_dssp             SEEEEEEECTTCHHHHHH-HHHHHHHHHHTGGGTTTEE-EEEEETT
T ss_pred             CeEEEEEECCcCHHHHHH-HHHHHHHHHHHHhccCcEE-EEEEeCC
Confidence            478889999999999999 9999999999986  3566 7778764

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=98.40  E-value=6.3e-07  Score=59.76  Aligned_cols=61  Identities=11%  Similarity=0.099  Sum_probs=42.6

Q ss_pred             EEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccc
Q 028808           80 IFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLS  159 (203)
Q Consensus        80 L~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~  159 (203)
                      .+.||++|||+|... .|.++++.+++.. .+. ++.|  |                        +.+++++||+..   
T Consensus         3 ~v~f~a~wC~~C~~~-~~~l~~~~~~~~~-~~~-~~~v--~------------------------~~~~~~~~~v~~---   50 (77)
T 1ilo_A            3 KIQIYGTGCANCQML-EKNAREAVKELGI-DAE-FEKI--K------------------------EMDQILEAGLTA---   50 (77)
T ss_dssp             EEEEECSSSSTTHHH-HHHHHHHHHHTTC-CEE-EEEE--C------------------------SHHHHHHHTCSS---
T ss_pred             EEEEEcCCChhHHHH-HHHHHHHHHHcCC-ceE-EEEe--c------------------------CHHHHHHCCCCc---
Confidence            467899999999998 8999888877642 233 4443  2                        346777888853   


Q ss_pred             cccCCCCcceEEEEEeCCEEEEE
Q 028808          160 AALLGPRSERWSAYVEDGRIKAL  182 (203)
Q Consensus       160 ~~g~~~~~~r~tfIIddG~I~~~  182 (203)
                              .|+ +++ ||+++..
T Consensus        51 --------~Pt-~~~-~G~~~~~   63 (77)
T 1ilo_A           51 --------LPG-LAV-DGELKIM   63 (77)
T ss_dssp             --------SSC-EEE-TTEEEEC
T ss_pred             --------CCE-EEE-CCEEEEc
Confidence                    354 445 9998765

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=98.39  E-value=2.7e-07  Score=84.63  Aligned_cols=74  Identities=8%  Similarity=0.193  Sum_probs=55.8

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHHHH--cCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCC
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKA--KGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDL  154 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~--~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv  154 (203)
                      ++||+.||++||++|... +|.|+++++++++  .++. ++.|..++                     |.+.+++++||+
T Consensus        31 k~vlV~FyA~WC~pCk~~-~P~l~~la~~~~~~~~~v~-~~~VD~d~---------------------d~~~~l~~~~~V   87 (519)
T 3t58_A           31 SAWAVEFFASWCGHAIAF-APTWKELANDVKDWRPALN-LAVLDCAE---------------------ETNSAVCREFNI   87 (519)
T ss_dssp             SEEEEEEECTTSHHHHHH-HHHHHHHHHHHGGGTTTEE-EEEEETTS---------------------GGGHHHHHHTTC
T ss_pred             CeEEEEEECCCCHHHHHH-HHHHHHHHHHhhCcCCcEE-EEEEECCc---------------------cccHHHHHHcCC
Confidence            478889999999999999 9999999999986  3566 77887754                     335678888887


Q ss_pred             ccccccccCCCCcceEEEEEe----CCEEEEEEe
Q 028808          155 GKDLSAALLGPRSERWSAYVE----DGRIKALNV  184 (203)
Q Consensus       155 ~~~~~~~g~~~~~~r~tfIId----dG~I~~~~~  184 (203)
                      ..           .|+.++++    +|+++....
T Consensus        88 ~~-----------~PTl~~f~~g~~~G~~~~~~~  110 (519)
T 3t58_A           88 AG-----------FPTVRFFQAFTKNGSGATLPG  110 (519)
T ss_dssp             CS-----------BSEEEEECTTCCSCCCEEECC
T ss_pred             cc-----------cCEEEEEcCcccCCCceeEec
Confidence            53           46777776    455554443

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=98.36  E-value=2.5e-07  Score=68.06  Aligned_cols=72  Identities=18%  Similarity=0.306  Sum_probs=54.0

Q ss_pred             CCCeEEEEEeeCC-------CCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCc
Q 028808           74 KGKKVVIFGLPGA-------YTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDG  146 (203)
Q Consensus        74 ~gk~vVL~~f~~~-------~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~  146 (203)
                      +|+ +|++.||++       |||+|... .|.|.++++++++ ++. ++.|..++..   .|             .|.+.
T Consensus        23 ~~~-~v~v~F~a~~~~~~~~wC~~C~~~-~p~l~~~~~~~~~-~~~-~~~vd~~~~~---~~-------------~d~~~   82 (123)
T 1wou_A           23 NGK-TIFAYFTGSKDAGGKSWCPDCVQA-EPVVREGLKHISE-GCV-FIYCQVGEKP---YW-------------KDPNN   82 (123)
T ss_dssp             TTS-EEEEEEECCBCTTCCBSCHHHHHH-HHHHHHHGGGCCT-TEE-EEEEECCCHH---HH-------------HCTTC
T ss_pred             CCC-EEEEEEEccCCCCCCCcCHHHHHh-hHHHHHHHHHcCC-CcE-EEEEECCCch---hh-------------hchhH
Confidence            466 677889999       99999999 8999998887754 576 8888887632   12             25677


Q ss_pred             hHHHHcCCccccccccCCCCcceEEEEEeC
Q 028808          147 SFHKSLDLGKDLSAALLGPRSERWSAYVED  176 (203)
Q Consensus       147 ~v~~~yGv~~~~~~~g~~~~~~r~tfIIdd  176 (203)
                      .+++.|++..           .|+.+++++
T Consensus        83 ~~~~~~~i~~-----------~Pt~~~~~~  101 (123)
T 1wou_A           83 DFRKNLKVTA-----------VPTLLKYGT  101 (123)
T ss_dssp             HHHHHHCCCS-----------SSEEEETTS
T ss_pred             HHHHHCCCCe-----------eCEEEEEcC
Confidence            8888998853           466666664

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=98.36  E-value=9.5e-07  Score=76.20  Aligned_cols=66  Identities=12%  Similarity=0.116  Sum_probs=49.4

Q ss_pred             eEEEEEeeCCCCCCCCccchhh-------HHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHH
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPS-------YKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFH  149 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~-------l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~  149 (203)
                      .++|+.||++||+ |... +|.       ++++++++++.++. ++.|.++.                       +.+++
T Consensus        29 ~~~lV~F~a~wC~-c~~~-~p~~~~~~~~~~~~a~~~~~~~v~-~~~Vd~~~-----------------------~~~l~   82 (350)
T 1sji_A           29 DVLCLYYHESVSS-DKVA-QKQFQLKEIVLELVAQVLEHKDIG-FVMVDAKK-----------------------EAKLA   82 (350)
T ss_dssp             SEEEEEEECCSCS-SSTT-SHHHHHHHHHHHHHHHHGGGSSEE-EEEEETTT-----------------------THHHH
T ss_pred             CeEEEEEECCCCc-chhh-CchhhhhhHHHHHHHHHHhhcCcE-EEEEeCCC-----------------------CHHHH
Confidence            4788899999999 9877 899       78888888776776 77776653                       34577


Q ss_pred             HHcCCccccccccCCCCcceEEEEEeCCEE
Q 028808          150 KSLDLGKDLSAALLGPRSERWSAYVEDGRI  179 (203)
Q Consensus       150 ~~yGv~~~~~~~g~~~~~~r~tfIIddG~I  179 (203)
                      ++||+..           .|+.+++.+|++
T Consensus        83 ~~~~v~~-----------~Pt~~~~~~g~~  101 (350)
T 1sji_A           83 KKLGFDE-----------EGSLYVLKGDRT  101 (350)
T ss_dssp             HHHTCCS-----------TTEEEEEETTEE
T ss_pred             HhcCCCc-----------cceEEEEECCcE
Confidence            7787742           466667778874

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=98.35  E-value=1.6e-07  Score=71.76  Aligned_cols=71  Identities=11%  Similarity=0.095  Sum_probs=42.8

Q ss_pred             EEEEeeCCC--CCCCCccchhhHHHhHHHHHHcCCc-EEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCc
Q 028808           79 VIFGLPGAY--TGVCSNQHVPSYKNNIDKFKAKGID-SVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLG  155 (203)
Q Consensus        79 VL~~f~~~~--cp~C~~ehl~~l~~~~~~f~~~gv~-~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~  155 (203)
                      +|++|+++|  |++|... .|.|++++++| + ++. .++.|..|                       .+.+++++||+.
T Consensus        37 ~vv~f~~~~~~C~~C~~l-~P~l~~la~~~-~-~v~~~~~~Vd~d-----------------------~~~~la~~~~V~   90 (142)
T 2es7_A           37 GVILLSSDPRRTPEVSDN-PVMIAELLREF-P-QFDWQVAVADLE-----------------------QSEAIGDRFNVR   90 (142)
T ss_dssp             EEEEECCCSCC----CCH-HHHHHHHHHTC-T-TSCCEEEEECHH-----------------------HHHHHHHTTTCC
T ss_pred             EEEEEECCCCCCccHHHH-HHHHHHHHHHh-c-ccceeEEEEECC-----------------------CCHHHHHhcCCC
Confidence            455677877  9999999 89999999888 3 232 04555443                       234577888875


Q ss_pred             cccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          156 KDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       156 ~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                                 +.|+++++.+|+++....|.
T Consensus        91 -----------~iPT~~~fk~G~~v~~~~G~  110 (142)
T 2es7_A           91 -----------RFPATLVFTDGKLRGALSGI  110 (142)
T ss_dssp             -----------SSSEEEEESCC----CEESC
T ss_pred             -----------cCCeEEEEeCCEEEEEEeCC
Confidence                       35777778899999887764

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=98.30  E-value=2e-06  Score=70.91  Aligned_cols=68  Identities=15%  Similarity=0.007  Sum_probs=49.3

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHH---cCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHH
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKA---KGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHK  150 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~---~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~  150 (203)
                      +|+ ++++.||++|||+|... .|.+++++.++++   .++. +..|..+.                       +.++++
T Consensus       137 ~~~-~~vv~F~a~wC~~C~~~-~p~l~~la~~~~~~~~~~v~-~~~vd~~~-----------------------~~~~~~  190 (243)
T 2hls_A          137 KGR-VHIETIITPSCPYCPYA-VLLAHMFAYEAWKQGNPVIL-SEAVEAYE-----------------------NPDIAD  190 (243)
T ss_dssp             CSC-EEEEEEECSSCSSHHHH-HHHHHHHHHHHHHTTCCCEE-EEEEETTT-----------------------CHHHHH
T ss_pred             CCC-cEEEEEECCCCCCcHHH-HHHHHHHHHHcccccCCcEE-EEEEECcc-----------------------CHHHHH
Confidence            555 77888999999999999 9999999998853   3555 66664432                       345777


Q ss_pred             HcCCccccccccCCCCcceEEEEEeCCEEE
Q 028808          151 SLDLGKDLSAALLGPRSERWSAYVEDGRIK  180 (203)
Q Consensus       151 ~yGv~~~~~~~g~~~~~~r~tfIIddG~I~  180 (203)
                      +||+..           .|+++|  ||+++
T Consensus       191 ~~~V~~-----------vPt~~i--~G~~~  207 (243)
T 2hls_A          191 KYGVMS-----------VPSIAI--NGYLV  207 (243)
T ss_dssp             HTTCCS-----------SSEEEE--TTEEE
T ss_pred             HcCCee-----------eCeEEE--CCEEE
Confidence            888752           465555  88875

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=98.30  E-value=4.8e-07  Score=66.46  Aligned_cols=68  Identities=6%  Similarity=-0.114  Sum_probs=48.6

Q ss_pred             CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHc----CCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHH
Q 028808           75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAK----GIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHK  150 (203)
Q Consensus        75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~----gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~  150 (203)
                      ++ .+|+.||++||++|... .|.|+++++++...    ++. ++.|..+                       .+.++++
T Consensus        33 ~~-~vlv~F~a~wC~~C~~~-~p~~~~la~~~~~~~~~~~v~-~~~vd~~-----------------------~~~~l~~   86 (127)
T 3h79_A           33 EK-DVFVLYYVPWSRHSVAA-MRLWDDLSMSQSQKRNHLTFV-AARIDGE-----------------------KYPDVIE   86 (127)
T ss_dssp             TC-EEEEEEECTTCHHHHHH-HHHHHHHHHHHHTSTTTTTEE-EEEEETT-----------------------TCHHHHH
T ss_pred             CC-CEEEEEECCccHHHHHH-hHHHHHHHHHHHhcccCCCeE-EEEEEcc-----------------------ccHhHHH
Confidence            45 78889999999999999 89999999988632    233 4445443                       3456788


Q ss_pred             HcCCccccccccCCCCcceEEEEEe-CCEE
Q 028808          151 SLDLGKDLSAALLGPRSERWSAYVE-DGRI  179 (203)
Q Consensus       151 ~yGv~~~~~~~g~~~~~~r~tfIId-dG~I  179 (203)
                      +|++..           .|+.++++ ++++
T Consensus        87 ~~~v~~-----------~Pt~~~~~~g~~~  105 (127)
T 3h79_A           87 RMRVSG-----------FPTMRYYTRIDKQ  105 (127)
T ss_dssp             HTTCCS-----------SSEEEEECSSCSS
T ss_pred             hcCCcc-----------CCEEEEEeCCCCC
Confidence            888753           47677777 4443

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=98.28  E-value=3.4e-07  Score=67.72  Aligned_cols=76  Identities=12%  Similarity=0.139  Sum_probs=54.1

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK  156 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~  156 (203)
                      +.|+++|.++|||+|..- .|.|++++++   .++. ++-|-+|...                   |-..+++..|||..
T Consensus        25 ~~vvi~khatwCgpc~~~-~~~~e~~~~~---~~v~-~~~vdVde~r-------------------~~Sn~IA~~~~V~h   80 (112)
T 3iv4_A           25 KYVFVLKHSETCPISANA-YDQFNKFLYE---RDMD-GYYLIVQQER-------------------DLSDYIAKKTNVKH   80 (112)
T ss_dssp             SEEEEEEECTTCHHHHHH-HHHHHHHHHH---HTCC-EEEEEGGGGH-------------------HHHHHHHHHHTCCC
T ss_pred             CCEEEEEECCcCHhHHHH-HHHHHHHhcc---CCce-EEEEEeecCc-------------------hhhHHHHHHhCCcc
Confidence            368889999999999988 8999988763   3477 6666554311                   11245788888863


Q ss_pred             ccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          157 DLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       157 ~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      .          .|+.+++.||++++.....
T Consensus        81 ~----------sPq~il~k~G~~v~~~SH~  100 (112)
T 3iv4_A           81 E----------SPQAFYFVNGEMVWNRDHG  100 (112)
T ss_dssp             C----------SSEEEEEETTEEEEEEEGG
T ss_pred             C----------CCeEEEEECCEEEEEeecc
Confidence            1          3666777899999987654

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=98.23  E-value=4.4e-07  Score=74.10  Aligned_cols=87  Identities=6%  Similarity=-0.004  Sum_probs=58.2

Q ss_pred             CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCC
Q 028808           75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDL  154 (203)
Q Consensus        75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv  154 (203)
                      |+ .||+.||++||++|... .|.|.+++++|.  ++. ++.|..++                        ..+++.|++
T Consensus       120 ~k-~vvV~F~a~wC~~C~~l-~p~l~~la~~~~--~v~-f~~vd~~~------------------------~~l~~~~~i  170 (217)
T 2trc_P          120 VT-TIVVNIYEDGVRGCDAL-NSSLECLAAEYP--MVK-FCKIRASN------------------------TGAGDRFSS  170 (217)
T ss_dssp             TC-EEEEEEECTTSTTHHHH-HHHHHHHHTTCT--TSE-EEEEEHHH------------------------HTCSTTSCG
T ss_pred             Cc-EEEEEEECCCCccHHHH-HHHHHHHHHHCC--CeE-EEEEECCc------------------------HHHHHHCCC
Confidence            45 67788999999999998 899999888874  566 77776531                        113345555


Q ss_pred             ccccccccCCCCcceEEEEEeCCEEEEEEeecCC-C--CcccCCHHHHHh
Q 028808          155 GKDLSAALLGPRSERWSAYVEDGRIKALNVEEAP-S--KMKVSGGDVILG  201 (203)
Q Consensus       155 ~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~~~-~--~~~~~~a~~vL~  201 (203)
                      .           ..|+.+++.+|+++...++... +  .++.++.+++|+
T Consensus       171 ~-----------~~PTl~~~~~G~~v~~~~G~~~~~g~~~~~~~Le~~L~  209 (217)
T 2trc_P          171 D-----------VLPTLLVYKGGELISNFISVAEQFAEDFFAADVESFLN  209 (217)
T ss_dssp             G-----------GCSEEEEEETTEEEEEETTGGGGSCSSCCHHHHHHHHH
T ss_pred             C-----------CCCEEEEEECCEEEEEEeCCcccCcccCCHHHHHHHHH
Confidence            3           3476666779999988877532 1  122244555554

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=98.23  E-value=8.1e-07  Score=70.36  Aligned_cols=105  Identities=10%  Similarity=0.035  Sum_probs=57.4

Q ss_pred             eeecccccCCCeEEEEEeeCCCCCCCCccchh-hH--HHhHHHHHHcCCcEEEEEecCC-HHHHHHHHHHhCCCCceEEE
Q 028808           66 TTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVP-SY--KNNIDKFKAKGIDSVICVAVND-PYVMNGWAEKLQAKDVIEFY  141 (203)
Q Consensus        66 ~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~-~l--~~~~~~f~~~gv~~vi~IS~d~-~~~~~~~~~~~~l~~~fpll  141 (203)
                      .+..+. .+|| +||+.||++||++|..- .+ .|  .+..+.+.+ ++. ++.|..+. +...+.|.+.          
T Consensus        31 a~~~A~-~~~K-pVlvdF~A~WC~~Ck~m-~~~~f~~~~va~~l~~-~fv-~ikVD~de~~~l~~~y~~~----------   95 (173)
T 3ira_A           31 AFEKAR-KENK-PVFLSIGYSTCHWCHMM-AHESFEDEEVAGLMNE-AFV-SIKVDREERPDIDNIYMTV----------   95 (173)
T ss_dssp             HHHHHH-HHTC-CEEEEEECTTCHHHHHH-HHHTTTCHHHHHHHHH-HCE-EEEEETTTCHHHHHHHHHH----------
T ss_pred             HHHHHH-HhCC-CEEEecccchhHhhccc-cccccCCHHHHHHHHh-cCc-eeeeCCcccCcHHHHHHHH----------
Confidence            455554 3677 57788999999999874 33 12  233344433 354 66666553 2222222211          


Q ss_pred             eeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEee-cCCCCcccCCHHHHHhc
Q 028808          142 GDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVE-EAPSKMKVSGGDVILGQ  202 (203)
Q Consensus       142 sD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~-~~~~~~~~~~a~~vL~~  202 (203)
                            +...+|+.           .+|++++++ +|++++.... +..+..+.++-.++|++
T Consensus        96 ------~q~~~gv~-----------g~Pt~v~l~~dG~~v~~~ty~p~~~~~~~~~f~~~L~~  141 (173)
T 3ira_A           96 ------CQIILGRG-----------GWPLNIIMTPGKKPFFAGTYIPKNTRFNQIGMLELVPR  141 (173)
T ss_dssp             ------HHHHHSCC-----------CSSEEEEECTTSCEEEEESSCCSSCBTTBCCHHHHHHH
T ss_pred             ------HHHHcCCC-----------CCcceeeECCCCCceeeeeeCCCCcCCCCCCHHHHHHH
Confidence                  11113442           468899999 9999987321 11122344556666654

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=98.23  E-value=2.4e-06  Score=74.61  Aligned_cols=71  Identities=10%  Similarity=0.133  Sum_probs=51.8

Q ss_pred             CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHc-----CCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHH
Q 028808           75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAK-----GIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFH  149 (203)
Q Consensus        75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~-----gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~  149 (203)
                      ++ ++|+.||++||++|... .|.++++++++++.     ++. ++.|.++                       .+.+++
T Consensus        22 ~~-~vlV~F~a~wC~~C~~~-~p~~~~~a~~~~~~~~~~~~v~-~~~Vd~~-----------------------~~~~l~   75 (382)
T 2r2j_A           22 AD-VALVNFYADWCRFSQML-HPIFEEASDVIKEEFPNENQVV-FARVDCD-----------------------QHSDIA   75 (382)
T ss_dssp             CS-EEEEEEECTTCHHHHHH-HHHHHHHHHHHTTCC---CCEE-EEEEETT-----------------------TCHHHH
T ss_pred             CC-eEEEEEECCCCHHHHHH-HHHHHHHHHHHHhhcCCCCceE-EEEEECC-----------------------ccHHHH
Confidence            45 78889999999999999 89999999999642     254 6666543                       345677


Q ss_pred             HHcCCccccccccCCCCcceEEEEEeCCEEEEE
Q 028808          150 KSLDLGKDLSAALLGPRSERWSAYVEDGRIKAL  182 (203)
Q Consensus       150 ~~yGv~~~~~~~g~~~~~~r~tfIIddG~I~~~  182 (203)
                      +.||+..           .|+.+++.+|+++.+
T Consensus        76 ~~~~v~~-----------~Pt~~~f~~G~~~~~   97 (382)
T 2r2j_A           76 QRYRISK-----------YPTLKLFRNGMMMKR   97 (382)
T ss_dssp             HHTTCCE-----------ESEEEEEETTEEEEE
T ss_pred             HhcCCCc-----------CCEEEEEeCCcEeee
Confidence            7887753           365555568887764

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=98.21  E-value=6.5e-07  Score=80.72  Aligned_cols=68  Identities=12%  Similarity=0.255  Sum_probs=52.2

Q ss_pred             CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCC
Q 028808           75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDL  154 (203)
Q Consensus        75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv  154 (203)
                      ++ .+|+.||++||++|... .|.+.++++++++.++. ++.|..+.                       +..+++.||+
T Consensus        31 ~~-~~lv~F~a~wC~~C~~~-~p~~~~~a~~~~~~~v~-~~~vd~~~-----------------------~~~l~~~~~v   84 (504)
T 2b5e_A           31 HD-LVLAEFFAPWCGHCKNM-APEYVKAAETLVEKNIT-LAQIDCTE-----------------------NQDLCMEHNI   84 (504)
T ss_dssp             CS-EEEEEEECTTCHHHHHH-HHHHHHHHHHTTTTTCE-EEEEETTT-----------------------CHHHHHHTTC
T ss_pred             CC-eEEEEEECCCCHHHHHh-HHHHHHHHHHhccCCeE-EEEEECCC-----------------------CHHHHHhcCC
Confidence            44 78889999999999999 89999999999876787 88887543                       3457777777


Q ss_pred             ccccccccCCCCcceEEEEEeCCEE
Q 028808          155 GKDLSAALLGPRSERWSAYVEDGRI  179 (203)
Q Consensus       155 ~~~~~~~g~~~~~~r~tfIIddG~I  179 (203)
                      ..           .|+.+++.+|++
T Consensus        85 ~~-----------~Pt~~~~~~g~~   98 (504)
T 2b5e_A           85 PG-----------FPSLKIFKNSDV   98 (504)
T ss_dssp             CS-----------SSEEEEEETTCT
T ss_pred             Cc-----------CCEEEEEeCCcc
Confidence            42           366666677765

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=98.19  E-value=1.1e-06  Score=65.05  Aligned_cols=84  Identities=15%  Similarity=0.050  Sum_probs=60.5

Q ss_pred             EEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccc
Q 028808           78 VVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKD  157 (203)
Q Consensus        78 vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~  157 (203)
                      .||+.||++||++|..- .|.|+++.+++.  ++. ++-|..|..                          ++.|++.  
T Consensus        25 ~vvv~F~a~wc~~C~~~-~p~l~~la~~~~--~v~-f~kvd~d~~--------------------------~~~~~v~--   72 (118)
T 3evi_A           25 WVIIHLYRSSIPMCLLV-NQHLSLLARKFP--ETK-FVKAIVNSC--------------------------IQHYHDN--   72 (118)
T ss_dssp             EEEEEEECTTSHHHHHH-HHHHHHHHHHCT--TSE-EEEEEGGGT--------------------------STTCCGG--
T ss_pred             eEEEEEeCCCChHHHHH-HHHHHHHHHHCC--CCE-EEEEEhHHh--------------------------HHHCCCC--
Confidence            67889999999999988 799999988875  476 777776541                          1345553  


Q ss_pred             cccccCCCCcceEEEEEeCCEEEEEEeecCC---CCcccCCHHHHHhc
Q 028808          158 LSAALLGPRSERWSAYVEDGRIKALNVEEAP---SKMKVSGGDVILGQ  202 (203)
Q Consensus       158 ~~~~g~~~~~~r~tfIIddG~I~~~~~~~~~---~~~~~~~a~~vL~~  202 (203)
                               +.|+.++..||+++...++...   ..++.++.+..|++
T Consensus        73 ---------~~PT~~~fk~G~~v~~~~G~~~~gg~~~~~~~le~~L~~  111 (118)
T 3evi_A           73 ---------CLPTIFVYKNGQIEAKFIGIIECGGINLKLEELEWKLAE  111 (118)
T ss_dssp             ---------GCSEEEEEETTEEEEEEESTTTTTCSSCCHHHHHHHHHT
T ss_pred             ---------CCCEEEEEECCEEEEEEeChhhhCCCCCCHHHHHHHHHH
Confidence                     3465556679999999998742   13455566777654

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=98.16  E-value=1e-06  Score=63.68  Aligned_cols=44  Identities=16%  Similarity=0.292  Sum_probs=35.8

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHc----CCcEEEEEecC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAK----GIDSVICVAVN  120 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~----gv~~vi~IS~d  120 (203)
                      +++ .+|+.||++||++|... .|.|+++++++++.    ++. ++.|..+
T Consensus        24 ~~~-~vlv~f~a~wC~~C~~~-~p~~~~~~~~~~~~~~~~~v~-~~~vd~~   71 (121)
T 2djj_A           24 DTK-DVLIEFYAPWCGHCKAL-APKYEELGALYAKSEFKDRVV-IAKVDAT   71 (121)
T ss_dssp             TTS-CEEEEEECSSCTTHHHH-HHHHHHHHHHHTTSSCTTSSE-EEEEETT
T ss_pred             CCC-CEEEEEECCCCHhHHHh-hHHHHHHHHHHhhcccCCceE-EEEEECc
Confidence            455 67788999999999999 89999999999762    466 7777665

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=98.15  E-value=3.3e-06  Score=75.44  Aligned_cols=72  Identities=10%  Similarity=0.142  Sum_probs=54.1

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK  156 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~  156 (203)
                      ..+|+.||++||++|... .|.|.+++++++++ +. ++.|.++.                       +..++++||+..
T Consensus        22 ~~~lv~F~a~wC~~C~~~-~p~~~~~a~~~~~~-v~-~~~vd~~~-----------------------~~~l~~~~~v~~   75 (481)
T 3f8u_A           22 GLMLVEFFAPWCGHAKRL-APEYEAAATRLKGI-VP-LAKVDCTA-----------------------NTNTCNKYGVSG   75 (481)
T ss_dssp             SEEEEEEECTTCHHHHHH-HHHHHHHHHHTTTT-CC-EEEEETTT-----------------------CHHHHHHTTCCE
T ss_pred             CeEEEEEECCCCHHHHHh-HHHHHHHHHHhcCc-eE-EEEEECCC-----------------------CHHHHHhcCCCC
Confidence            478889999999999998 89999999998765 77 88787654                       345777787753


Q ss_pred             ccccccCCCCcceEEEEEeCCEEEEEEee
Q 028808          157 DLSAALLGPRSERWSAYVEDGRIKALNVE  185 (203)
Q Consensus       157 ~~~~~g~~~~~~r~tfIIddG~I~~~~~~  185 (203)
                                 .|+.+++.+|+++....|
T Consensus        76 -----------~Ptl~~~~~g~~~~~~~G   93 (481)
T 3f8u_A           76 -----------YPTLKIFRDGEEAGAYDG   93 (481)
T ss_dssp             -----------ESEEEEEETTEEEEECCS
T ss_pred             -----------CCEEEEEeCCceeeeecC
Confidence                       465555568877655543

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=98.06  E-value=4.9e-06  Score=78.83  Aligned_cols=75  Identities=4%  Similarity=0.010  Sum_probs=55.9

Q ss_pred             cccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchH
Q 028808           69 IKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSF  148 (203)
Q Consensus        69 L~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v  148 (203)
                      +.++ +|+ .|++.||++||++|... +|.|+++++++++ .+. ++.|..++.                       ..+
T Consensus       450 ~~~~-~~~-~vlv~F~a~wC~~c~~~-~p~~~~~a~~~~~-~v~-~~~vd~~~~-----------------------~~~  501 (780)
T 3apo_A          450 FPAS-DKE-PWLVDFFAPWSPPSRAL-LPELRKASTLLYG-QLK-VGTLDCTIH-----------------------EGL  501 (780)
T ss_dssp             SCTT-CCS-CEEEEEECTTCHHHHHH-HHHHHHHHHHTTT-TCE-EEEEETTTC-----------------------HHH
T ss_pred             HHHc-CCC-eEEEEEECCCCHHHHHH-hHHHHHHHHHhcC-CeE-EEEEeCCCC-----------------------HHH
Confidence            4453 666 57788999999999999 9999999999975 376 888876532                       236


Q ss_pred             HHHcCCccccccccCCCCcceEEEEEeCCEEEEEE
Q 028808          149 HKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALN  183 (203)
Q Consensus       149 ~~~yGv~~~~~~~g~~~~~~r~tfIIddG~I~~~~  183 (203)
                      ++.||+..           .|+++++++|++ +.+
T Consensus       502 ~~~~~v~~-----------~Pt~~~~~~g~~-~~~  524 (780)
T 3apo_A          502 CNMYNIQA-----------YPTTVVFNQSSI-HEY  524 (780)
T ss_dssp             HHHTTCCS-----------SSEEEEEETTEE-EEE
T ss_pred             HHHcCCCc-----------CCeEEEEcCCce-eee
Confidence            77787742           467777888877 444

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=98.02  E-value=1.3e-07  Score=68.60  Aligned_cols=39  Identities=8%  Similarity=0.049  Sum_probs=30.3

Q ss_pred             eeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHH
Q 028808           65 ATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKF  106 (203)
Q Consensus        65 ~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f  106 (203)
                      +.++|++. .|| .+++.||++|||+|... .|.|.++++++
T Consensus         3 ~~~~la~~-~~k-~~vV~F~A~WC~~C~~~-~p~~~~~a~~~   41 (106)
T 3kp8_A            3 LAVGLAAH-LRQ-IGGTMYGAYWCPHCQDQ-KELFGAAFDQV   41 (106)
T ss_dssp             HHHHHHHH-HHH-HTCEEEECTTCHHHHHH-HHHHGGGGGGS
T ss_pred             HhhHHHHh-cCC-CEEEEEECCCCHHHHHH-HHHHHHHHHhC
Confidence            45778884 676 45668999999999998 89888876443

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=98.02  E-value=1.4e-06  Score=78.01  Aligned_cols=42  Identities=24%  Similarity=0.394  Sum_probs=33.6

Q ss_pred             CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHc-CCcEEEEEec
Q 028808           75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAK-GIDSVICVAV  119 (203)
Q Consensus        75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~-gv~~vi~IS~  119 (203)
                      || .||+.||++||++|... +|.+.++++++++. ++. ++.|..
T Consensus       370 ~k-~vlv~f~a~wC~~C~~~-~p~~~~l~~~~~~~~~v~-~~~id~  412 (481)
T 3f8u_A          370 NK-DVLIEFYAPWCGHCKNL-EPKYKELGEKLSKDPNIV-IAKMDA  412 (481)
T ss_dssp             TC-EEEEEEECTTBHHHHHH-HHHHHHHHHHTTTCSSEE-EEEEET
T ss_pred             CC-cEEEEEecCcChhHHHh-hHHHHHHHHHhccCCCEE-EEEEEC
Confidence            55 68889999999999999 99999999999765 444 444544

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=97.97  E-value=1.8e-06  Score=81.91  Aligned_cols=72  Identities=11%  Similarity=0.023  Sum_probs=53.7

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK  156 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~  156 (203)
                      ++||+.||++||++|... +|.+++++++++. ++. ++.|..+.                       +..+++.||+..
T Consensus       676 ~~v~v~F~a~wC~~C~~~-~p~~~~la~~~~~-~~~-~~~vd~~~-----------------------~~~~~~~~~v~~  729 (780)
T 3apo_A          676 THWVVDFYAPWSGPSQNF-APEFELLARMIKG-KVR-AGKVDCQA-----------------------YPQTCQKAGIKA  729 (780)
T ss_dssp             SCEEEEEECTTCHHHHHH-HHHHHHHHHHHTT-TCE-EEEEETTT-----------------------CHHHHHHTTCCS
T ss_pred             CeEEEEEECCCCHHHHHH-HHHHHHHHHHhcC-Cce-EEEEECCC-----------------------CHHHHHhcCCCc
Confidence            467788999999999999 9999999999875 476 77776643                       235677777742


Q ss_pred             ccccccCCCCcceEEEEEeCCEEEEEEee
Q 028808          157 DLSAALLGPRSERWSAYVEDGRIKALNVE  185 (203)
Q Consensus       157 ~~~~~g~~~~~~r~tfIIddG~I~~~~~~  185 (203)
                                 .|+.+++.+|+++....+
T Consensus       730 -----------~Pt~~~~~~g~~~~~~~G  747 (780)
T 3apo_A          730 -----------YPSVKLYQYERAKKSIWE  747 (780)
T ss_dssp             -----------SSEEEEEEEETTTTEEEE
T ss_pred             -----------CCEEEEEcCCCccccccC
Confidence                       466667777777665555

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=97.79  E-value=7e-06  Score=66.36  Aligned_cols=39  Identities=23%  Similarity=0.232  Sum_probs=29.4

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEec
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAV  119 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~  119 (203)
                      +|+ ++|+.||..|||+|... .+.+.++.+    .+++ |+.+..
T Consensus        85 ~~k-~~vv~F~d~~Cp~C~~~-~~~l~~l~~----~~v~-v~~~~~  123 (216)
T 1eej_A           85 QEK-HVITVFTDITCGYCHKL-HEQMADYNA----LGIT-VRYLAF  123 (216)
T ss_dssp             TCC-EEEEEEECTTCHHHHHH-HTTHHHHHH----TTEE-EEEEEC
T ss_pred             CCC-EEEEEEECCCCHHHHHH-HHHHHHHHh----CCcE-EEEEEC
Confidence            454 67888999999999998 688877543    4677 776643

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=97.75  E-value=8.5e-06  Score=62.94  Aligned_cols=40  Identities=10%  Similarity=0.151  Sum_probs=31.3

Q ss_pred             eeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHH
Q 028808           66 TTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKA  108 (203)
Q Consensus        66 ~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~  108 (203)
                      .+.+.+ -.++ ++|+.|+..|||+|... .+.+.++.+++.+
T Consensus        14 ~~~~G~-~~a~-v~i~~f~d~~Cp~C~~~-~~~l~~l~~~~~~   53 (175)
T 3gyk_A           14 APVLGN-PEGD-VTVVEFFDYNCPYCRRA-MAEVQGLVDADPN   53 (175)
T ss_dssp             SCEEEC-TTCS-EEEEEEECTTCHHHHHH-HHHHHHHHHHCTT
T ss_pred             CCCcCC-CCCC-EEEEEEECCCCccHHHH-HHHHHHHHHhCCC
Confidence            456666 3565 78889999999999998 7999888777543

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=97.70  E-value=1.6e-05  Score=59.02  Aligned_cols=75  Identities=5%  Similarity=-0.052  Sum_probs=41.8

Q ss_pred             EEEEEeeCCCCCCCCccchhhHHHhHHHH-HHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808           78 VVIFGLPGAYTGVCSNQHVPSYKNNIDKF-KAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK  156 (203)
Q Consensus        78 vVL~~f~~~~cp~C~~ehl~~l~~~~~~f-~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~  156 (203)
                      .+|+.||++||++|..- -+.+...+++- +.+.+. ++-|.+++.                     ....++..|++. 
T Consensus        20 ~~LV~F~A~wC~~Ck~~-~~~i~~~~~~~a~~~~~~-l~~vdv~~~---------------------~~~~la~~~~V~-   75 (116)
T 3dml_A           20 LRLLMFEQPGCLYCARW-DAEIAPQYPLTDEGRAAP-VQRLQMRDP---------------------LPPGLELARPVT-   75 (116)
T ss_dssp             EEEEEEECTTCHHHHHH-HHHTTTTGGGSHHHHHSC-EEEEETTSC---------------------CCTTCBCSSCCC-
T ss_pred             CEEEEEECCCCHHHHHH-HHHHHhhHHHhhhcccce-EEEEECCCC---------------------CchhHHHHCCCC-
Confidence            57788999999999753 22222221110 011234 555544431                     112345556654 


Q ss_pred             ccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          157 DLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       157 ~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                                +.|+.++++||+.+.+.++-
T Consensus        76 ----------g~PT~i~f~~G~ev~Ri~G~   95 (116)
T 3dml_A           76 ----------FTPTFVLMAGDVESGRLEGY   95 (116)
T ss_dssp             ----------SSSEEEEEETTEEEEEEECC
T ss_pred             ----------CCCEEEEEECCEEEeeecCC
Confidence                      34666666899999987653

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=97.68  E-value=1.3e-05  Score=72.61  Aligned_cols=42  Identities=14%  Similarity=0.199  Sum_probs=34.9

Q ss_pred             EEEEEeeCCCCCCCCccchhhHHHhHHHHHHc-C------CcEEEEEecCC
Q 028808           78 VVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAK-G------IDSVICVAVND  121 (203)
Q Consensus        78 vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~-g------v~~vi~IS~d~  121 (203)
                      +||+.||++||++|... .|.|.++++++++. |      +. ++.|..|.
T Consensus        44 ~VlV~FyA~WC~pCk~~-~P~l~~la~~~~~~~g~~~~~~v~-f~~VD~d~   92 (470)
T 3qcp_A           44 PWIVLFYNDGCGACRRY-ASTFSKFAGGLKVEHGKDALQIAT-AAAVNCAS   92 (470)
T ss_dssp             CEEEEEECTTCHHHHHH-HHHHHHHHHTSCCSSCSSGGGGCE-EEEEETTT
T ss_pred             eEEEEEECCCCHHHHHH-HHHHHHHHHHHhhhcccccCceEE-EEEEECCC
Confidence            67889999999999999 99999999988743 2      66 77777654

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=97.67  E-value=2.8e-05  Score=62.42  Aligned_cols=42  Identities=10%  Similarity=0.014  Sum_probs=32.6

Q ss_pred             CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC
Q 028808           75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN  120 (203)
Q Consensus        75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d  120 (203)
                      +++++|+.||++|||+|... .|.+++++.++.  ++. ++.|..+
T Consensus       135 ~~~~~~v~F~a~wC~~C~~~-~~~~~~~~~~~~--~v~-~~~vd~~  176 (229)
T 2ywm_A          135 DIPIEIWVFVTTSCGYCPSA-AVMAWDFALAND--YIT-SKVIDAS  176 (229)
T ss_dssp             CSCEEEEEEECTTCTTHHHH-HHHHHHHHHHCT--TEE-EEEEEGG
T ss_pred             CCCeEEEEEECCCCcchHHH-HHHHHHHHHHCC--CeE-EEEEECC
Confidence            34576888999999999999 899999888772  455 6666543

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=97.51  E-value=7e-05  Score=58.68  Aligned_cols=41  Identities=15%  Similarity=0.161  Sum_probs=31.0

Q ss_pred             CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEec
Q 028808           75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAV  119 (203)
Q Consensus        75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~  119 (203)
                      ++ ++|+.|+..|||+|... .+.+.++.+++.. .+. +..+..
T Consensus        22 ~~-~~i~~f~d~~Cp~C~~~-~~~l~~l~~~~~~-~v~-~~~~p~   62 (195)
T 2znm_A           22 GK-IEVLEFFGYFCVHCHHF-DPLLLKLGKALPS-DAY-LRTEHV   62 (195)
T ss_dssp             SS-EEEEEEECTTSCCTTSS-CHHHHHHHHHSCT-TEE-EEEEEC
T ss_pred             CC-cEEEEEECCCChhHHHH-hHHHHHHHHHCCC-ceE-EEEecc
Confidence            44 77788999999999999 6999988877753 354 555543

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=97.45  E-value=4.6e-05  Score=59.91  Aligned_cols=43  Identities=12%  Similarity=0.152  Sum_probs=32.7

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN  120 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d  120 (203)
                      .++ ++|+.|+..|||+|... .+.+.++.+++.+ ++. +.-+..+
T Consensus        24 ~~~-~~vv~f~d~~Cp~C~~~-~~~l~~l~~~~~~-~v~-~~~~~~~   66 (195)
T 3hd5_A           24 PGK-IEVLEFFAYTCPHCAAI-EPMVEDWAKTAPQ-DVV-LKQVPIA   66 (195)
T ss_dssp             TTC-EEEEEEECTTCHHHHHH-HHHHHHHHHTCCT-TEE-EEEEECC
T ss_pred             CCC-eEEEEEECCCCccHHHh-hHHHHHHHHHCCC-CeE-EEEEecc
Confidence            355 77888999999999998 6888888777654 455 6666654

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=97.43  E-value=2.5e-05  Score=67.05  Aligned_cols=34  Identities=18%  Similarity=0.380  Sum_probs=29.7

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHc
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAK  109 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~  109 (203)
                      .++ .+++.||++||++|... .|.+.+++++|++.
T Consensus       266 ~~k-~~lv~f~a~wC~~C~~~-~p~~~~la~~~~~~  299 (361)
T 3uem_A          266 EKK-NVFVEFYAPWCGHCKQL-APIWDKLGETYKDH  299 (361)
T ss_dssp             TTC-EEEEEEECTTCHHHHHH-HHHHHHHHHHTTTC
T ss_pred             CCC-cEEEEEecCcCHhHHHH-HHHHHHHHHHhccC
Confidence            345 77889999999999999 89999999999865

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=97.38  E-value=2.4e-05  Score=56.18  Aligned_cols=29  Identities=14%  Similarity=0.344  Sum_probs=20.8

Q ss_pred             cccCCCeEEEEEeeCCCCCCCCccchhhHHHh
Q 028808           71 DIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNN  102 (203)
Q Consensus        71 dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~  102 (203)
                      ++.++++ |++ ||++|||+|... .+.|.++
T Consensus        15 ~~~~~~~-vv~-f~a~~C~~C~~~-~~~l~~~   43 (116)
T 2e7p_A           15 ELASSAP-VVV-FSKTYCGYCNRV-KQLLTQV   43 (116)
T ss_dssp             HHHTSSS-EEE-EECTTCHHHHHH-HHHHHHH
T ss_pred             HHHcCCC-EEE-EECCCChhHHHH-HHHHHHc
Confidence            3345664 444 999999999987 7766654

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=97.33  E-value=6.6e-05  Score=67.50  Aligned_cols=33  Identities=21%  Similarity=0.420  Sum_probs=28.7

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHH
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKA  108 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~  108 (203)
                      .+| .||+.||++||++|... .|.+.+++++++.
T Consensus       375 ~~k-~vlv~F~a~wC~~C~~~-~p~~~~l~~~~~~  407 (504)
T 2b5e_A          375 PKK-DVLVLYYAPWCGHCKRL-APTYQELADTYAN  407 (504)
T ss_dssp             TTC-CEEEEEECTTCHHHHHH-HHHHHHHHHHHHH
T ss_pred             CCC-CEEEEEECCCChhHHHH-hHHHHHHHHHhhc
Confidence            355 57788999999999999 8999999999973

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=97.19  E-value=0.0002  Score=56.77  Aligned_cols=54  Identities=15%  Similarity=0.176  Sum_probs=37.0

Q ss_pred             eEEEEEeeC-------CCCCCCCccchhhHHHhHHHHHHc----CCcEEEEEecCCHHHHHHHHHHhCCC
Q 028808           77 KVVIFGLPG-------AYTGVCSNQHVPSYKNNIDKFKAK----GIDSVICVAVNDPYVMNGWAEKLQAK  135 (203)
Q Consensus        77 ~vVL~~f~~-------~~cp~C~~ehl~~l~~~~~~f~~~----gv~~vi~IS~d~~~~~~~~~~~~~l~  135 (203)
                      ..||+.||+       .||++|..- .|.|++++++|+..    .+. +.-|.+|.   ..+.++++++.
T Consensus        38 ~~vvV~F~A~~~~~~~~wCgpCk~l-~P~~e~lA~~~~~~~~~~~v~-f~kvD~d~---~~~la~~~~I~  102 (178)
T 3ga4_A           38 YFNILYITMRGTNSNGMSCQLCHDF-EKTYHAVADVIRSQAPQSLNL-FFTVDVNE---VPQLVKDLKLQ  102 (178)
T ss_dssp             CEEEEEEECCSBCTTSCBCHHHHHH-HHHHHHHHHHHHHHCTTCCEE-EEEEETTT---CHHHHHHTTCC
T ss_pred             CcEEEEEeCCCCCCCCCCChhHHHH-HHHHHHHHHHhhhccCCCCEE-EEEEECcc---CHHHHHHcCCC
Confidence            367888999       499999988 89999999999732    233 44455544   23445555553

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=97.19  E-value=0.0003  Score=61.10  Aligned_cols=53  Identities=15%  Similarity=0.045  Sum_probs=35.6

Q ss_pred             eEEEEEeeCCCCCCCCccch------hhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCC
Q 028808           77 KVVIFGLPGAYTGVCSNQHV------PSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQA  134 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl------~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l  134 (203)
                      .+||+.|++.||++|... -      |.++++.++++..++. +..|.++..   ...++++++
T Consensus        31 ~~vlV~FyApWC~~~~~~-~~l~~~~p~~e~~a~~~~~~~v~-~~~Vd~~~~---~~l~~~~~V   89 (367)
T 3us3_A           31 EVLALLYHEPPEDDKASQ-RQFEMEELILELAAQVLEDKGVG-FGLVDSEKD---AAVAKKLGL   89 (367)
T ss_dssp             SEEEEEEECCCCSSHHHH-HHHHHHHHHHHHHHHHHTTTTEE-EEEEETTTT---HHHHHHHTC
T ss_pred             CeEEEEEECCCchhHHHh-hhhccccHHHHHHHHHhhcCCce-EEEEeCccc---HHHHHHcCC
Confidence            478889999999988432 1      3677777777766676 777776542   334455544

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=97.15  E-value=0.00019  Score=56.22  Aligned_cols=41  Identities=17%  Similarity=0.167  Sum_probs=29.6

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEe
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVA  118 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS  118 (203)
                      .++ ++|+.|+..|||+|... .+.+.++.+++.+ ++. +.-+.
T Consensus        24 ~~~-~~i~~f~d~~Cp~C~~~-~~~l~~l~~~~~~-~v~-~~~~p   64 (192)
T 3h93_A           24 PGK-IEVVELFWYGCPHCYAF-EPTIVPWSEKLPA-DVH-FVRLP   64 (192)
T ss_dssp             TTS-EEEEEEECTTCHHHHHH-HHHHHHHHHTCCT-TEE-EEEEE
T ss_pred             CCC-CEEEEEECCCChhHHHh-hHHHHHHHHhCCC-CeE-EEEEe
Confidence            344 78889999999999988 6888777766654 344 44343

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=96.99  E-value=0.00068  Score=45.31  Aligned_cols=46  Identities=11%  Similarity=-0.001  Sum_probs=28.6

Q ss_pred             EEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCC
Q 028808           80 IFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQA  134 (203)
Q Consensus        80 L~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l  134 (203)
                      ++.|+++|||+|... .+.|.       ++|++ +..+..+......++.++++.
T Consensus         3 v~~f~~~~C~~C~~~-~~~l~-------~~~i~-~~~vdi~~~~~~~~~~~~~g~   48 (81)
T 1h75_A            3 ITIYTRNDCVQCHAT-KRAME-------NRGFD-FEMINVDRVPEAAEALRAQGF   48 (81)
T ss_dssp             EEEEECTTCHHHHHH-HHHHH-------HTTCC-CEEEETTTCHHHHHHHHHTTC
T ss_pred             EEEEcCCCChhHHHH-HHHHH-------HCCCC-eEEEECCCCHHHHHHHHHhCC
Confidence            345899999999865 44443       45787 778887743223333334444

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=96.95  E-value=0.00075  Score=53.65  Aligned_cols=55  Identities=9%  Similarity=0.076  Sum_probs=38.3

Q ss_pred             CeEEEEEeeCC-CCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCC
Q 028808           76 KKVVIFGLPGA-YTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAK  135 (203)
Q Consensus        76 k~vVL~~f~~~-~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~  135 (203)
                      ++++|+.|++. ||++|..- .|.++++.+. . ..+. ++.|..++++ ..+.++++++.
T Consensus        22 ~~v~lv~f~~~~~C~~C~~~-~~~~~~la~~-~-~~v~-~~~vd~~~~~-~~~~~~~~~v~   77 (226)
T 1a8l_A           22 NPVKLIVFVRKDHCQYCDQL-KQLVQELSEL-T-DKLS-YEIVDFDTPE-GKELAKRYRID   77 (226)
T ss_dssp             SCEEEEEEECSSSCTTHHHH-HHHHHHHHTT-C-TTEE-EEEEETTSHH-HHHHHHHTTCC
T ss_pred             CCeEEEEEecCCCCchhHHH-HHHHHHHHhh-C-CceE-EEEEeCCCcc-cHHHHHHcCCC
Confidence            35888889999 99999877 6877776543 2 2465 7777777632 24566777764

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=96.90  E-value=0.0033  Score=48.31  Aligned_cols=19  Identities=11%  Similarity=0.254  Sum_probs=15.5

Q ss_pred             CCCeEEEEEeeCCCCCCCCc
Q 028808           74 KGKKVVIFGLPGAYTGVCSN   93 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~   93 (203)
                      +|| .|++.|.++||+.|..
T Consensus        41 ~~K-~vlvd~~a~wC~~C~~   59 (153)
T 2dlx_A           41 QNK-WLMINIQNVQDFACQC   59 (153)
T ss_dssp             HTC-EEEEEEECSCTTTHHH
T ss_pred             cCC-eEEEEEECCCCHhHHH
Confidence            466 5778899999999964

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=96.90  E-value=0.00024  Score=47.86  Aligned_cols=36  Identities=22%  Similarity=0.115  Sum_probs=23.2

Q ss_pred             EEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC
Q 028808           80 IFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN  120 (203)
Q Consensus        80 L~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d  120 (203)
                      +..|+++|||+|... .+.++++.+   +.|++ +..+..|
T Consensus         4 ~~~f~~~~C~~C~~~-~~~l~~~~~---~~~~~-~~~~~v~   39 (80)
T 2k8s_A            4 KAIFYHAGCPVCVSA-EQAVANAID---PSKYT-VEIVHLG   39 (80)
T ss_dssp             EEEEEECSCHHHHHH-HHHHHHHSC---TTTEE-EEEEETT
T ss_pred             eEEEeCCCCCchHHH-HHHHHHHHH---hcCCe-EEEEEec
Confidence            345789999999877 676665533   34555 5555444

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=96.87  E-value=0.00026  Score=47.73  Aligned_cols=37  Identities=5%  Similarity=-0.041  Sum_probs=27.3

Q ss_pred             EEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC
Q 028808           80 IFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN  120 (203)
Q Consensus        80 L~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d  120 (203)
                      ++.|+++|||+|... .+.|.++..++  .|+. +.-+..+
T Consensus         3 v~~f~~~~C~~C~~~-~~~l~~l~~~~--~~i~-~~~vdi~   39 (85)
T 1ego_A            3 TVIFGRSGCPYCVRA-KDLAEKLSNER--DDFQ-YQYVDIR   39 (85)
T ss_dssp             EEEECCTTSTHHHHH-HHHHHHHHHHH--SSCE-EEEECHH
T ss_pred             EEEEeCCCCCCHHHH-HHHHHHHHhcC--CCce-EEEEecc
Confidence            345899999999987 77777776654  4677 7777553

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=96.83  E-value=0.0003  Score=56.52  Aligned_cols=35  Identities=20%  Similarity=0.144  Sum_probs=26.2

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEE
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICV  117 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~I  117 (203)
                      +++|+.|+..|||+|... .+.+.++    .+.|++ |.-+
T Consensus        87 k~~vv~F~d~~Cp~C~~~-~~~l~~~----~~~~v~-v~~~  121 (211)
T 1t3b_A           87 KHVVTVFMDITCHYCHLL-HQQLKEY----NDLGIT-VRYL  121 (211)
T ss_dssp             SEEEEEEECTTCHHHHHH-HTTHHHH----HHTTEE-EEEE
T ss_pred             CEEEEEEECCCCHhHHHH-HHHHHHH----HhCCcE-EEEE
Confidence            477888999999999988 5887763    334676 6544

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=96.82  E-value=0.0019  Score=49.55  Aligned_cols=50  Identities=10%  Similarity=0.105  Sum_probs=36.2

Q ss_pred             eeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcC-CcEEEEEec
Q 028808           66 TTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKG-IDSVICVAV  119 (203)
Q Consensus        66 ~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~g-v~~vi~IS~  119 (203)
                      .+.+.+ -.++ +.|+.|+..+||+|..- .+.+.++.+++.+.| ++ ++-...
T Consensus        19 ~~~~G~-~~a~-v~i~~f~D~~Cp~C~~~-~~~~~~~~~~~~~~~~v~-~~~~~~   69 (175)
T 1z6m_A           19 GLHIGE-SNAP-VKMIEFINVRCPYCRKW-FEESEELLAQSVKSGKVE-RIIKLF   69 (175)
T ss_dssp             SEEESC-TTCS-EEEEEEECTTCHHHHHH-HHHHHHHHHHHHHTTSEE-EEEEEC
T ss_pred             CcccCC-CCCC-eEEEEEECCCCcchHHH-HHHHHHHHHHHhhCCcEE-EEEEeC
Confidence            456666 3555 77788999999999988 688888888885443 55 665443

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=96.64  E-value=0.00031  Score=49.89  Aligned_cols=36  Identities=11%  Similarity=0.062  Sum_probs=23.5

Q ss_pred             EEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC
Q 028808           78 VVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN  120 (203)
Q Consensus        78 vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d  120 (203)
                      .+|+.|++.|||+|..- .+.|.++     ..++. +.-|..|
T Consensus        17 ~~v~~f~~~~C~~C~~~-~~~L~~l-----~~~i~-~~~vdi~   52 (100)
T 1wjk_A           17 PVLTLFTKAPCPLCDEA-KEVLQPY-----KDRFI-LQEVDIT   52 (100)
T ss_dssp             CEEEEEECSSCHHHHHH-HHHTSTT-----SSSSE-EEEEETT
T ss_pred             CEEEEEeCCCCcchHHH-HHHHHHh-----hhCCe-EEEEECC
Confidence            45666999999999765 4444432     23466 7677665

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=96.62  E-value=0.0019  Score=42.18  Aligned_cols=33  Identities=12%  Similarity=0.083  Sum_probs=23.1

Q ss_pred             EEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC
Q 028808           80 IFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND  121 (203)
Q Consensus        80 L~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~  121 (203)
                      +..|++.|||+|... .+.|.       ++|+. +..+..+.
T Consensus         3 i~~y~~~~C~~C~~~-~~~l~-------~~~i~-~~~~di~~   35 (75)
T 1r7h_A            3 ITLYTKPACVQCTAT-KKALD-------RAGLA-YNTVDISL   35 (75)
T ss_dssp             EEEEECTTCHHHHHH-HHHHH-------HTTCC-CEEEETTT
T ss_pred             EEEEeCCCChHHHHH-HHHHH-------HcCCC-cEEEECCC
Confidence            345899999999865 44443       45777 77777764

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=96.60  E-value=0.00089  Score=48.68  Aligned_cols=37  Identities=8%  Similarity=0.134  Sum_probs=26.5

Q ss_pred             EEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC
Q 028808           79 VIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN  120 (203)
Q Consensus        79 VL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d  120 (203)
                      +|+.|+++|||+|..- .+.|.++.++   .|+. +.-|.+|
T Consensus        31 ~vv~y~~~~C~~C~~a-~~~L~~l~~e---~~i~-~~~vDId   67 (107)
T 2fgx_A           31 KLVVYGREGCHLCEEM-IASLRVLQKK---SWFE-LEVINID   67 (107)
T ss_dssp             CEEEEECSSCHHHHHH-HHHHHHHHHH---SCCC-CEEEETT
T ss_pred             EEEEEeCCCChhHHHH-HHHHHHHHHh---cCCe-EEEEECC
Confidence            4667999999999876 5666666544   4577 6666665

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=96.49  E-value=0.00078  Score=52.39  Aligned_cols=41  Identities=12%  Similarity=0.131  Sum_probs=29.7

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEe
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVA  118 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS  118 (203)
                      .++ +.|+.|+..+||.|... .+.+.++.+++.. .+. +.-+.
T Consensus        24 ~a~-v~i~~f~d~~Cp~C~~~-~~~l~~l~~~~~~-~v~-~~~~p   64 (193)
T 2rem_A           24 AGK-IEVVEIFGYTCPHCAHF-DSKLQAWGARQAK-DVR-FTLVP   64 (193)
T ss_dssp             TTC-EEEEEEECTTCHHHHHH-HHHHHHHHHTSCT-TEE-EEEEE
T ss_pred             CCC-eEEEEEECCCChhHhhh-hHHHHHHHHhcCC-ceE-EEEeC
Confidence            344 67788999999999998 6888887776643 354 54444

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=96.48  E-value=0.0014  Score=52.41  Aligned_cols=55  Identities=11%  Similarity=-0.052  Sum_probs=36.6

Q ss_pred             CeEEEEEe----eCCCCCCCCccchhhHHHhHHHHHHc-CCcEEEEEecCCHHHHHHHHHHhCCC
Q 028808           76 KKVVIFGL----PGAYTGVCSNQHVPSYKNNIDKFKAK-GIDSVICVAVNDPYVMNGWAEKLQAK  135 (203)
Q Consensus        76 k~vVL~~f----~~~~cp~C~~ehl~~l~~~~~~f~~~-gv~~vi~IS~d~~~~~~~~~~~~~l~  135 (203)
                      ++++|++|    |+.||+.|..- +|.+.+++.++.+. .+. +..|..+.   ..+.++++++.
T Consensus        21 ~~v~v~~~~~~~~~~~C~~c~~~-~~~~~~~a~~~~~~~~v~-~~~vd~~~---~~~l~~~~~v~   80 (229)
T 2ywm_A           21 EPVSIKLFSQAIGCESCQTAEEL-LKETVEVIGEAVGQDKIK-LDIYSPFT---HKEETEKYGVD   80 (229)
T ss_dssp             SCEEEEEECCCTTCGGGGHHHHH-HHHHHHHHHHHHCTTTEE-EEEECTTT---CHHHHHHTTCC
T ss_pred             CCeEEEEEccCCCCcccHHHHHH-HHHHHHHHhccCCCCceE-EEEecCcc---cHHHHHHcCCC
Confidence            45777778    57777777776 78888887777432 354 66665543   35667777765

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=96.33  E-value=0.0028  Score=51.84  Aligned_cols=37  Identities=8%  Similarity=0.251  Sum_probs=25.9

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEe
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVA  118 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS  118 (203)
                      +++|+.|+..|||+|... .+.+.++.++   .++. |+-+.
T Consensus        98 k~~v~~F~D~~Cp~C~~~-~~~l~~~~~~---g~v~-v~~~~  134 (241)
T 1v58_A           98 PVIVYVFADPFCPYCKQF-WQQARPWVDS---GKVQ-LRTLL  134 (241)
T ss_dssp             SEEEEEEECTTCHHHHHH-HHHHHHHHHT---TSEE-EEEEE
T ss_pred             CeEEEEEECCCChhHHHH-HHHHHHHHhC---CcEE-EEEEE
Confidence            467888999999999988 5777665432   2365 55443

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=96.09  E-value=0.004  Score=56.41  Aligned_cols=52  Identities=6%  Similarity=-0.093  Sum_probs=38.4

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCC
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAK  135 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~  135 (203)
                      ++.+..||+.|||+|..- .|.|+++..++.  ++. +.-|..+.   ..+.++++++.
T Consensus       118 ~~~i~~f~a~~C~~C~~~-~~~l~~~a~~~~--~v~-~~~vd~~~---~~~~~~~~~i~  169 (521)
T 1hyu_A          118 DFEFETYYSLSCHNCPDV-VQALNLMAVLNP--RIK-HTAIDGGT---FQNEITERNVM  169 (521)
T ss_dssp             CEEEEEEECTTCSSHHHH-HHHHHHHHHHCT--TEE-EEEEETTT---CHHHHHHTTCC
T ss_pred             CcceEEEECCCCcCcHHH-HHHHHHHHhHcC--ceE-EEEEechh---hHHHHHHhCCC
Confidence            467888999999999987 788888776654  466 77777664   34566777763

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=96.07  E-value=0.011  Score=40.23  Aligned_cols=52  Identities=6%  Similarity=-0.006  Sum_probs=33.3

Q ss_pred             EEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHh-CCCCceEEEee
Q 028808           81 FGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKL-QAKDVIEFYGD  143 (203)
Q Consensus        81 ~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~-~l~~~fpllsD  143 (203)
                      +.|..+|||+|..- .+.|       +++|+. +.-+..+ +....++.+.. +.. .+|.+..
T Consensus         9 ~~y~~~~C~~C~~~-~~~L-------~~~~i~-~~~vdv~-~~~~~~l~~~~~~~~-~vP~l~~   61 (89)
T 2klx_A            9 ILYTRPNCPYCKRA-RDLL-------DKKGVK-YTDIDAS-TSLRQEMVQRANGRN-TFPQIFI   61 (89)
T ss_dssp             EEESCSCCTTTHHH-HHHH-------HHHTCC-EEEECSC-HHHHHHHHHHHHSSC-CSCEEEE
T ss_pred             EEEECCCChhHHHH-HHHH-------HHcCCC-cEEEECC-HHHHHHHHHHhCCCC-CcCEEEE
Confidence            35889999999764 3333       345677 7778777 44455666666 654 4666543

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=95.67  E-value=0.0082  Score=41.60  Aligned_cols=20  Identities=10%  Similarity=0.134  Sum_probs=14.4

Q ss_pred             EEEeeCCCCCCCCccchhhHH
Q 028808           80 IFGLPGAYTGVCSNQHVPSYK  100 (203)
Q Consensus        80 L~~f~~~~cp~C~~ehl~~l~  100 (203)
                      |+.||++|||+|..- .+.|.
T Consensus         3 vv~f~a~~C~~C~~~-~~~L~   22 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQA-VEALA   22 (87)
T ss_dssp             EEEEECSSCHHHHHH-HHHHH
T ss_pred             EEEEECCCCchHHHH-HHHHH
Confidence            456999999999865 34443

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=95.48  E-value=0.0013  Score=48.56  Aligned_cols=40  Identities=5%  Similarity=-0.012  Sum_probs=30.2

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN  120 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d  120 (203)
                      ..|++.||+. |.+|..- .|.|.+++++|+.+ +. ++-|..|
T Consensus        24 ~pv~v~f~a~-~~~c~~~-~p~l~~~A~~~~gk-~~-f~~vd~d   63 (133)
T 2djk_A           24 IPLAYIFAET-AEERKEL-SDKLKPIAEAQRGV-IN-FGTIDAK   63 (133)
T ss_dssp             SCEEEEECSC-SSSHHHH-HHHHHHHHHSSTTT-SE-EEEECTT
T ss_pred             CCEEEEEecC-hhhHHHH-HHHHHHHHHHhCCe-EE-EEEEchH
Confidence            3577889999 8899876 79999999888654 55 5555543

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=95.22  E-value=0.026  Score=39.54  Aligned_cols=40  Identities=13%  Similarity=0.151  Sum_probs=25.1

Q ss_pred             EeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHH
Q 028808           82 GLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAE  130 (203)
Q Consensus        82 ~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~  130 (203)
                      .|..+|||+|..-  .      +-++++|+. .--+..+.....++...
T Consensus         8 vYs~~~Cp~C~~a--K------~~L~~~gi~-y~~idi~~d~~~~~~~~   47 (92)
T 2lqo_A            8 IYTTSWCGYCLRL--K------TALTANRIA-YDEVDIEHNRAAAEFVG   47 (92)
T ss_dssp             EEECTTCSSHHHH--H------HHHHHTTCC-CEEEETTTCHHHHHHHH
T ss_pred             EEcCCCCHhHHHH--H------HHHHhcCCc-eEEEEcCCCHHHHHHHH
Confidence            4889999999753  2      234567888 77777764333333333

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=95.14  E-value=0.0029  Score=44.34  Aligned_cols=20  Identities=5%  Similarity=0.008  Sum_probs=14.5

Q ss_pred             EEeeCCCCCCCCccchhhHHH
Q 028808           81 FGLPGAYTGVCSNQHVPSYKN  101 (203)
Q Consensus        81 ~~f~~~~cp~C~~ehl~~l~~  101 (203)
                      +.|+++|||+|..- .+.|.+
T Consensus        15 ~~f~~~~C~~C~~~-~~~L~~   34 (105)
T 1kte_A           15 VVFIKPTCPFCRKT-QELLSQ   34 (105)
T ss_dssp             EEEECSSCHHHHHH-HHHHHH
T ss_pred             EEEEcCCCHhHHHH-HHHHHH
Confidence            34889999999865 455544

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=95.01  E-value=0.018  Score=49.05  Aligned_cols=55  Identities=18%  Similarity=0.173  Sum_probs=41.4

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCC
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAK  135 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~  135 (203)
                      +.+++.|++.||+.|..- ++.|++++++|+.+ +. ++.|..+.. .....++.+|+.
T Consensus       136 ~~~~v~F~~~~~~~~~~~-~~~~~~~A~~~~~~-i~-f~~vd~~~~-~~~~~~~~fgi~  190 (361)
T 3uem_A          136 KTHILLFLPKSVSDYDGK-LSNFKTAAESFKGK-IL-FIFIDSDHT-DNQRILEFFGLK  190 (361)
T ss_dssp             CEEEEEECCSSSSSHHHH-HHHHHHHHGGGTTT-CE-EEEECTTSG-GGHHHHHHTTCC
T ss_pred             CcEEEEEEeCCchhHHHH-HHHHHHHHHHccCc-eE-EEEecCChH-HHHHHHHHcCCC
Confidence            456778899999999987 89999999999865 66 777766632 135566777764

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=94.91  E-value=0.021  Score=47.30  Aligned_cols=52  Identities=10%  Similarity=0.169  Sum_probs=35.0

Q ss_pred             eEEEEEee--CCCCCCCCccchhhHHHhHHHHHH--cCCcEEEEEecCC--HHHHHHHHHHhCC
Q 028808           77 KVVIFGLP--GAYTGVCSNQHVPSYKNNIDKFKA--KGIDSVICVAVND--PYVMNGWAEKLQA  134 (203)
Q Consensus        77 ~vVL~~f~--~~~cp~C~~ehl~~l~~~~~~f~~--~gv~~vi~IS~d~--~~~~~~~~~~~~l  134 (203)
                      +.||+.||  ++||+    - .|.|.+++++|+.  ..+. |.-|.+++  .......++++++
T Consensus        34 ~~vlV~Fy~~ApWCg----l-~P~~e~lA~~~~~~~~~v~-~akVD~d~~g~~~n~~la~~~~V   91 (248)
T 2c0g_A           34 PYSVVKFDIASPYGE----K-HEAFTAFSKSAHKATKDLL-IATVGVKDYGELENKALGDRYKV   91 (248)
T ss_dssp             SEEEEEEEESSCCSH----H-HHHHHHHHHHHHHHCSSEE-EEEEEECSSTTCTTHHHHHHTTC
T ss_pred             CCEEEEEECCCCCCc----c-HHHHHHHHHHHhccCCCeE-EEEEECCcccccccHHHHHHhCC
Confidence            36777888  99998    4 6999999999975  3455 66677655  1112345555555

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=94.91  E-value=0.037  Score=37.55  Aligned_cols=53  Identities=9%  Similarity=0.019  Sum_probs=32.5

Q ss_pred             EEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC-HHHHHHHHHHhCCCCceEEEee
Q 028808           81 FGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND-PYVMNGWAEKLQAKDVIEFYGD  143 (203)
Q Consensus        81 ~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~-~~~~~~~~~~~~l~~~fpllsD  143 (203)
                      +.|...|||.|..- .+.       ++++|++ +.-+..+. +....++.+..+.. .+|.+..
T Consensus         9 ~ly~~~~C~~C~~~-~~~-------L~~~~i~-~~~~di~~~~~~~~~l~~~~~~~-~vP~l~~   62 (92)
T 2khp_A            9 IIYTRPGCPYCARA-KAL-------LARKGAE-FNEIDASATPELRAEMQERSGRN-TFPQIFI   62 (92)
T ss_dssp             EEEECTTCHHHHHH-HHH-------HHHTTCC-CEEEESTTSHHHHHHHHHHHTSS-CCCEEEE
T ss_pred             EEEECCCChhHHHH-HHH-------HHHcCCC-cEEEECCCCHHHHHHHHHHhCCC-CcCEEEE
Confidence            34788999999754 333       3345777 77777764 34445566666653 4565544

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=94.67  E-value=0.035  Score=36.53  Aligned_cols=53  Identities=6%  Similarity=-0.033  Sum_probs=31.3

Q ss_pred             EEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC-HHHHHHHHHHhCCCCceEEEee
Q 028808           81 FGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND-PYVMNGWAEKLQAKDVIEFYGD  143 (203)
Q Consensus        81 ~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~-~~~~~~~~~~~~l~~~fpllsD  143 (203)
                      +.|...|||.|..- .+.|.       ++|+. +.-+..+. +....++.+.++.. .+|.+..
T Consensus         4 ~~y~~~~C~~C~~~-~~~l~-------~~~i~-~~~~~i~~~~~~~~~~~~~~~~~-~vP~l~~   57 (82)
T 1fov_A            4 EIYTKETCPYCHRA-KALLS-------SKGVS-FQELPIDGNAAKREEMIKRSGRT-TVPQIFI   57 (82)
T ss_dssp             EEEECSSCHHHHHH-HHHHH-------HHTCC-CEEEECTTCSHHHHHHHHHHSSC-CSCEEEE
T ss_pred             EEEECCCChhHHHH-HHHHH-------HCCCC-cEEEECCCCHHHHHHHHHHhCCC-CcCEEEE
Confidence            34788999999754 33333       34676 66666654 33444556666654 4555543

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=94.63  E-value=0.012  Score=48.48  Aligned_cols=38  Identities=16%  Similarity=0.243  Sum_probs=27.9

Q ss_pred             eEEEEEeeC--CCCCCCCccchhhHHHhHHHHHH-cCCcEEEEEecC
Q 028808           77 KVVIFGLPG--AYTGVCSNQHVPSYKNNIDKFKA-KGIDSVICVAVN  120 (203)
Q Consensus        77 ~vVL~~f~~--~~cp~C~~ehl~~l~~~~~~f~~-~gv~~vi~IS~d  120 (203)
                      +.||+.|++  +||+    - .|.|.++.++++. .++. +.-|.+|
T Consensus        23 ~~vlV~FyA~~pWCg----l-~P~~e~lA~~~~~~~~v~-~akVDvd   63 (240)
T 2qc7_A           23 KFVLVKFDTQYPYGE----K-QDEFKRLAENSASSDDLL-VAEVGIS   63 (240)
T ss_dssp             SEEEEEECCSSCCSH----H-HHHHHHHHHHHTTCTTEE-EEEECCC
T ss_pred             CCEEEEEeCCCCCCc----c-hHHHHHHHHHhcCCCCeE-EEEEeCC
Confidence            367888999  9999    4 6999999999875 2344 5555544

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=94.58  E-value=0.028  Score=39.96  Aligned_cols=51  Identities=12%  Similarity=0.161  Sum_probs=28.4

Q ss_pred             EeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC----HHHHHHHHHH-hCCCCceEEEe
Q 028808           82 GLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND----PYVMNGWAEK-LQAKDVIEFYG  142 (203)
Q Consensus        82 ~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~----~~~~~~~~~~-~~l~~~fplls  142 (203)
                      .|+.+|||+|..- .+-       ++++|+. .-.+..+.    ....+++..+ .+.. .+|.+.
T Consensus        23 vy~~~~Cp~C~~~-~~~-------L~~~~i~-~~~~di~~~~~~~~~~~~~l~~~~g~~-tvP~if   78 (113)
T 3rhb_A           23 IYSKTWCSYCTEV-KTL-------FKRLGVQ-PLVVELDQLGPQGPQLQKVLERLTGQH-TVPNVF   78 (113)
T ss_dssp             EEECTTCHHHHHH-HHH-------HHHTTCC-CEEEEGGGSTTHHHHHHHHHHHHHSCC-SSCEEE
T ss_pred             EEECCCChhHHHH-HHH-------HHHcCCC-CeEEEeecCCCChHHHHHHHHHHhCCC-CcCEEE
Confidence            4889999999754 333       3345666 55555543    2333444433 4654 466554

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=94.46  E-value=0.028  Score=39.54  Aligned_cols=50  Identities=10%  Similarity=0.121  Sum_probs=27.7

Q ss_pred             EeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCH-HHHHHHHHHh-CCCCceEEE
Q 028808           82 GLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDP-YVMNGWAEKL-QAKDVIEFY  141 (203)
Q Consensus        82 ~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~-~~~~~~~~~~-~l~~~fpll  141 (203)
                      .|..+|||+|..- ..-       ++++|+. +.-+..+.. .....+.+.. +.. .+|.+
T Consensus        20 vy~~~~Cp~C~~a-k~~-------L~~~~i~-y~~idI~~~~~~~~~l~~~~~g~~-~vP~i   71 (99)
T 3qmx_A           20 IYTWSTCPFCMRA-LAL-------LKRKGVE-FQEYCIDGDNEAREAMAARANGKR-SLPQI   71 (99)
T ss_dssp             EEECTTCHHHHHH-HHH-------HHHHTCC-CEEEECTTCHHHHHHHHHHTTTCC-CSCEE
T ss_pred             EEEcCCChhHHHH-HHH-------HHHCCCC-CEEEEcCCCHHHHHHHHHHhCCCC-CCCEE
Confidence            4899999999754 222       3345676 666666543 3333343433 443 34444

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=94.45  E-value=0.0022  Score=54.61  Aligned_cols=37  Identities=8%  Similarity=0.038  Sum_probs=26.0

Q ss_pred             eeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHH
Q 028808           65 ATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNID  104 (203)
Q Consensus        65 ~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~  104 (203)
                      ..+.+++.++..  .++.|+++|||+|.+. .|.|+++.+
T Consensus       188 ~~~~la~~l~~~--~vV~F~A~WC~~Ck~l-~p~le~lA~  224 (291)
T 3kp9_A          188 LAVGLAAHLRQI--GGTMYGAYWCPHCQDQ-KELFGAAFD  224 (291)
T ss_dssp             THHHHHHHHHHT--TCEEEECTTCHHHHHH-HHHHGGGGG
T ss_pred             HHHHHHHHhCCC--CEEEEECCCCHHHHHH-HHHHHHHHH
Confidence            456676654433  2457899999999988 788877653

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.43  E-value=0.043  Score=40.38  Aligned_cols=50  Identities=4%  Similarity=0.035  Sum_probs=28.8

Q ss_pred             eeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC----HHHHHHHHHHhCCCCceEEEe
Q 028808           83 LPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND----PYVMNGWAEKLQAKDVIEFYG  142 (203)
Q Consensus        83 f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~----~~~~~~~~~~~~l~~~fplls  142 (203)
                      |+..|||+|..- .+.|.       ++|+. +..+..|.    +.....+.+..+.. .+|.+.
T Consensus        32 f~~~~Cp~C~~~-~~~L~-------~~~i~-~~~vdid~~~~~~~~~~~l~~~~g~~-~vP~l~   85 (130)
T 2cq9_A           32 FSKTSCSYCTMA-KKLFH-------DMNVN-YKVVELDLLEYGNQFQDALYKMTGER-TVPRIF   85 (130)
T ss_dssp             EECSSCSHHHHH-HHHHH-------HHTCC-CEEEETTTSTTHHHHHHHHHHHHSSC-CSSEEE
T ss_pred             EEcCCChHHHHH-HHHHH-------HcCCC-cEEEECcCCcCcHHHHHHHHHHhCCC-CcCEEE
Confidence            889999999765 34333       34566 55666653    22233455556653 355443

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=94.25  E-value=0.11  Score=36.69  Aligned_cols=61  Identities=11%  Similarity=0.084  Sum_probs=36.6

Q ss_pred             cccCCCeEEEEEeeC----CCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC-HHHHHHHHHHhCCCCceEEEe
Q 028808           71 DIFKGKKVVIFGLPG----AYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND-PYVMNGWAEKLQAKDVIEFYG  142 (203)
Q Consensus        71 dl~~gk~vVL~~f~~----~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~-~~~~~~~~~~~~l~~~fplls  142 (203)
                      ++.+..+++ +|+.+    .|||+|..- ..       -++++|+. +.-+..+. +.....+.+..+.. .+|.+.
T Consensus        10 ~~i~~~~vv-vy~~g~~~~~~Cp~C~~a-k~-------~L~~~~i~-~~~vdi~~~~~~~~~l~~~~g~~-~vP~if   75 (109)
T 1wik_A           10 VLTNKASVM-LFMKGNKQEAKCGFSKQI-LE-------ILNSTGVE-YETFDILEDEEVRQGLKTFSNWP-TYPQLY   75 (109)
T ss_dssp             HHHTTSSEE-EEESSTTTCCCSSTHHHH-HH-------HHHHTCSC-EEEEESSSCHHHHHHHHHHHSCC-SSCEEE
T ss_pred             HHhccCCEE-EEEecCCCCCCCchHHHH-HH-------HHHHcCCC-eEEEECCCCHHHHHHHHHHhCCC-CCCEEE
Confidence            333444444 44554    899999753 22       23456888 88888764 44455566666654 476665

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=93.69  E-value=0.047  Score=41.26  Aligned_cols=50  Identities=4%  Similarity=0.035  Sum_probs=28.3

Q ss_pred             eeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC----HHHHHHHHHHhCCCCceEEEe
Q 028808           83 LPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND----PYVMNGWAEKLQAKDVIEFYG  142 (203)
Q Consensus        83 f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~----~~~~~~~~~~~~l~~~fplls  142 (203)
                      |+++|||+|..- .+.|.       +.|+. +..+..|.    +....++.+..+.. .+|.+.
T Consensus        54 f~~~~Cp~C~~~-k~~L~-------~~~i~-~~~vdId~~~~~~~~~~~L~~~~g~~-tvP~if  107 (146)
T 2ht9_A           54 FSKTSCSYCTMA-KKLFH-------DMNVN-YKVVELDLLEYGNQFQDALYKMTGER-TVPRIF  107 (146)
T ss_dssp             EECTTCHHHHHH-HHHHH-------HHTCC-CEEEEGGGCTTHHHHHHHHHHHHSCC-CSCEEE
T ss_pred             EECCCChhHHHH-HHHHH-------HcCCC-eEEEECccCcCCHHHHHHHHHHhCCC-CcCeEE
Confidence            899999999865 44443       33565 55555542    22233455555553 355543

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=93.67  E-value=0.036  Score=37.62  Aligned_cols=31  Identities=13%  Similarity=0.200  Sum_probs=18.8

Q ss_pred             EEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC
Q 028808           81 FGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN  120 (203)
Q Consensus        81 ~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d  120 (203)
                      ..|..+|||.|..- ...|.       ++|++ .-.+..+
T Consensus        15 ~ly~~~~Cp~C~~~-~~~L~-------~~gi~-~~~~~v~   45 (92)
T 3ic4_A           15 LMYGLSTCPHCKRT-LEFLK-------REGVD-FEVIWID   45 (92)
T ss_dssp             EEEECTTCHHHHHH-HHHHH-------HHTCC-CEEEEGG
T ss_pred             EEEECCCChHHHHH-HHHHH-------HcCCC-cEEEEee
Confidence            34889999999764 33333       34555 4455554

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=93.39  E-value=0.077  Score=37.25  Aligned_cols=47  Identities=11%  Similarity=0.051  Sum_probs=27.1

Q ss_pred             CCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC-HHHHHHHHHHhCCCCceEEEe
Q 028808           86 AYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND-PYVMNGWAEKLQAKDVIEFYG  142 (203)
Q Consensus        86 ~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~-~~~~~~~~~~~~l~~~fplls  142 (203)
                      +|||+|..- .+.|       +++|+. +.-+..+. +.....+.+..+.. .+|.+.
T Consensus        30 ~~C~~C~~~-~~~L-------~~~~i~-~~~vdi~~~~~~~~~l~~~~g~~-~vP~v~   77 (105)
T 2yan_A           30 AKCGFSKQI-LEIL-------NSTGVE-YETFDILEDEEVRQGLKAYSNWP-TYPQLY   77 (105)
T ss_dssp             BCTTHHHHH-HHHH-------HHHTCC-CEEEEGGGCHHHHHHHHHHHTCC-SSCEEE
T ss_pred             CCCccHHHH-HHHH-------HHCCCC-eEEEECCCCHHHHHHHHHHHCCC-CCCeEE
Confidence            899999754 3333       344677 66776653 44444455555654 355553

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=93.33  E-value=0.067  Score=38.68  Aligned_cols=31  Identities=16%  Similarity=0.287  Sum_probs=20.1

Q ss_pred             EeeCCCCCCCCccchhhHHHhHHHHHHcC---CcEEEEEecC
Q 028808           82 GLPGAYTGVCSNQHVPSYKNNIDKFKAKG---IDSVICVAVN  120 (203)
Q Consensus        82 ~f~~~~cp~C~~ehl~~l~~~~~~f~~~g---v~~vi~IS~d  120 (203)
                      .|+++|||+|..  +  |.   +-+++.|   +. +..+..|
T Consensus        29 vf~~~~Cp~C~~--a--lk---~~L~~~~~~~i~-~~~vdid   62 (118)
T 3c1r_A           29 VASKTYCPYCHA--A--LN---TLFEKLKVPRSK-VLVLQLN   62 (118)
T ss_dssp             EEECSSCHHHHH--H--HH---HHHTTSCCCGGG-EEEEEGG
T ss_pred             EEEcCCCcCHHH--H--HH---HHHHHcCCCCCC-eEEEECc
Confidence            488999999963  2  12   2344566   76 6667665

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=93.09  E-value=0.089  Score=36.77  Aligned_cols=31  Identities=16%  Similarity=0.078  Sum_probs=19.3

Q ss_pred             EEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC
Q 028808           81 FGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN  120 (203)
Q Consensus        81 ~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d  120 (203)
                      +.|+.+|||+|..- .+.|.       ++|+. .-.+..+
T Consensus        25 ~ly~~~~Cp~C~~a-k~~L~-------~~~i~-y~~vdI~   55 (103)
T 3nzn_A           25 IMYGLSTCVWCKKT-KKLLT-------DLGVD-FDYVYVD   55 (103)
T ss_dssp             EEEECSSCHHHHHH-HHHHH-------HHTBC-EEEEEGG
T ss_pred             EEEcCCCCchHHHH-HHHHH-------HcCCC-cEEEEee
Confidence            34899999999764 33333       34565 5455554

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=92.46  E-value=0.14  Score=36.60  Aligned_cols=55  Identities=16%  Similarity=0.218  Sum_probs=30.6

Q ss_pred             CeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC---CHHHHHH-HHHHhCCCCceEEEe
Q 028808           76 KKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN---DPYVMNG-WAEKLQAKDVIEFYG  142 (203)
Q Consensus        76 k~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d---~~~~~~~-~~~~~~l~~~fplls  142 (203)
                      ++++|  |..+|||.|..- ..-       ++++|+. .-.+..|   +....++ ..+..+.. .+|.+.
T Consensus        17 ~~v~v--y~~~~Cp~C~~a-k~~-------L~~~~i~-~~~~dvd~~~~~~~~~~~l~~~~g~~-tvP~vf   75 (114)
T 3h8q_A           17 SRVVI--FSKSYCPHSTRV-KEL-------FSSLGVE-CNVLELDQVDDGARVQEVLSEITNQK-TVPNIF   75 (114)
T ss_dssp             CSEEE--EECTTCHHHHHH-HHH-------HHHTTCC-CEEEETTTSTTHHHHHHHHHHHHSCC-SSCEEE
T ss_pred             CCEEE--EEcCCCCcHHHH-HHH-------HHHcCCC-cEEEEecCCCChHHHHHHHHHHhCCC-ccCEEE
Confidence            33444  889999999753 222       3345676 6566665   2333333 34555654 455554

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=92.15  E-value=0.047  Score=39.02  Aligned_cols=19  Identities=11%  Similarity=0.025  Sum_probs=13.4

Q ss_pred             EEeeCCCCCCCCccchhhHH
Q 028808           81 FGLPGAYTGVCSNQHVPSYK  100 (203)
Q Consensus        81 ~~f~~~~cp~C~~ehl~~l~  100 (203)
                      +.|+++|||+|..- .+.|.
T Consensus        22 v~f~~~~Cp~C~~~-~~~L~   40 (114)
T 2hze_A           22 TIFVKYTCPFCRNA-LDILN   40 (114)
T ss_dssp             EEEECTTCHHHHHH-HHHHT
T ss_pred             EEEEeCCChhHHHH-HHHHH
Confidence            34889999999765 44433

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=92.04  E-value=0.036  Score=43.42  Aligned_cols=41  Identities=22%  Similarity=0.386  Sum_probs=29.1

Q ss_pred             CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEec
Q 028808           75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAV  119 (203)
Q Consensus        75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~  119 (203)
                      ++ ++|+.|+..|||+|..- .|.+.++.+++.+ .+. +.-+..
T Consensus        24 ~~-v~vv~f~d~~Cp~C~~~-~~~l~~~~~~~~~-~v~-~~~~p~   64 (193)
T 3hz8_A           24 GK-VEVLEFFGYFCPHCAHL-EPVLSKHAKSFKD-DMY-LRTEHV   64 (193)
T ss_dssp             TS-EEEEEEECTTCHHHHHH-HHHHHHHHTTCCT-TEE-EEEEEC
T ss_pred             CC-cEEEEEECCCChhHHHH-HHHHHHHHHHCCC-CeE-EEEecC
Confidence            44 77888999999999987 5888777666654 343 444444

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=91.26  E-value=0.28  Score=32.46  Aligned_cols=33  Identities=12%  Similarity=0.041  Sum_probs=19.7

Q ss_pred             EEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC
Q 028808           80 IFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND  121 (203)
Q Consensus        80 L~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~  121 (203)
                      +..|...|||.|..- ..       -++++|+. +--+..|.
T Consensus         6 v~ly~~~~Cp~C~~~-~~-------~L~~~~i~-~~~~~vd~   38 (89)
T 3msz_A            6 VKIYTRNGCPYCVWA-KQ-------WFEENNIA-FDETIIDD   38 (89)
T ss_dssp             EEEEECTTCHHHHHH-HH-------HHHHTTCC-CEEEECCS
T ss_pred             EEEEEcCCChhHHHH-HH-------HHHHcCCC-ceEEEeec
Confidence            445889999999754 22       23455655 44444443

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.96  E-value=0.55  Score=33.37  Aligned_cols=47  Identities=9%  Similarity=0.015  Sum_probs=27.1

Q ss_pred             EeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC-HHHHHHHHHH
Q 028808           82 GLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND-PYVMNGWAEK  131 (203)
Q Consensus        82 ~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~-~~~~~~~~~~  131 (203)
                      .|..++||.|..-  ..-++...-++++|+. +.-+..+. +...+++.+.
T Consensus        12 vy~~~~C~~C~~~--~~~~~ak~~L~~~gi~-y~~vdI~~~~~~~~~l~~~   59 (111)
T 2ct6_A           12 VFIASSSGFVAIK--KKQQDVVRFLEANKIE-FEEVDITMSEEQRQWMYKN   59 (111)
T ss_dssp             EEECSSCSCHHHH--HHHHHHHHHHHHTTCC-EEEEETTTCHHHHHHHHHS
T ss_pred             EEEcCCCCCcccc--hhHHHHHHHHHHcCCC-EEEEECCCCHHHHHHHHHH
Confidence            4678999999730  1122233445677888 77777764 3333334433

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=90.96  E-value=0.02  Score=45.39  Aligned_cols=43  Identities=16%  Similarity=0.213  Sum_probs=30.1

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhH---HHhHHHHHHcCCcEEEEEecC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSY---KNNIDKFKAKGIDSVICVAVN  120 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l---~~~~~~f~~~gv~~vi~IS~d  120 (203)
                      .++ ++|+-|++.|||+|..- .|.+   .++.+++.+ ++. +.-+..+
T Consensus       112 ~~~-~~vveFf~~~C~~C~~~-~p~~~~~~~l~~~~~~-~v~-~~~~~v~  157 (197)
T 1un2_A          112 AGA-PQVLEFFSFFCPHCYQF-EEVLHISDNVKKKLPE-GVK-MTKYHVN  157 (197)
T ss_dssp             TTC-CSEEEEECTTCHHHHHH-HHTSCHHHHHTTSSCT-TCC-EEEEECS
T ss_pred             CCC-CEEEEEECCCChhHHHh-CcccccHHHHHHHCCC-CCE-EEEeccC
Confidence            355 57778999999999876 5766   666655543 466 7666654

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=90.04  E-value=0.21  Score=35.71  Aligned_cols=61  Identities=10%  Similarity=0.059  Sum_probs=33.8

Q ss_pred             ccccCCCeEEEEEeeC-----CCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC-CHHHHHHHHHHhCCCCceEEEe
Q 028808           70 KDIFKGKKVVIFGLPG-----AYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN-DPYVMNGWAEKLQAKDVIEFYG  142 (203)
Q Consensus        70 ~dl~~gk~vVL~~f~~-----~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d-~~~~~~~~~~~~~l~~~fplls  142 (203)
                      .++.+..+|||  |-.     +|||.|..-  .      .-++++|+. ..-+..+ ++.....+.+..|.. .+|.+.
T Consensus        10 ~~~i~~~~Vvl--f~kg~~~~~~Cp~C~~a--k------~~L~~~gi~-y~~~di~~d~~~~~~l~~~~g~~-tvP~if   76 (111)
T 3zyw_A           10 KKLTHAAPCML--FMKGTPQEPRCGFSKQM--V------EILHKHNIQ-FSSFDIFSDEEVRQGLKAYSSWP-TYPQLY   76 (111)
T ss_dssp             HHHHTSSSEEE--EESBCSSSBSSHHHHHH--H------HHHHHTTCC-CEEEEGGGCHHHHHHHHHHHTCC-SSCEEE
T ss_pred             HHHHhcCCEEE--EEecCCCCCcchhHHHH--H------HHHHHcCCC-eEEEECcCCHHHHHHHHHHHCCC-CCCEEE
Confidence            34445555655  345     899999753  2      224456777 6666654 344444444444544 466554

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=89.95  E-value=0.53  Score=31.53  Aligned_cols=44  Identities=16%  Similarity=0.095  Sum_probs=27.8

Q ss_pred             EeeCC----CCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC------CHHHHHHHHHHhCC
Q 028808           82 GLPGA----YTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN------DPYVMNGWAEKLQA  134 (203)
Q Consensus        82 ~f~~~----~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d------~~~~~~~~~~~~~l  134 (203)
                      .|..+    |||.|.+-  .      .-++++|+. .--+..+      ++....++.+..+.
T Consensus         4 iY~~~~~~~~Cp~C~~a--k------~~L~~~gi~-y~~idI~~~~~~~~~~~~~~l~~~~g~   57 (87)
T 1aba_A            4 VYGYDSNIHKCGPCDNA--K------RLLTVKKQP-FEFINIMPEKGVFDDEKIAELLTKLGR   57 (87)
T ss_dssp             EEECCTTTSCCHHHHHH--H------HHHHHTTCC-EEEEESCSBTTBCCHHHHHHHHHHHTC
T ss_pred             EEEeCCCCCcCccHHHH--H------HHHHHcCCC-EEEEEeeccccccCHHHHHHHHHHhCC
Confidence            47788    99999643  2      234567787 6677666      34445555555554

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=89.59  E-value=0.35  Score=35.49  Aligned_cols=53  Identities=11%  Similarity=0.181  Sum_probs=28.4

Q ss_pred             EEeeCCCCCCCCccchhhHHHhHHHHHHcC---CcEEEEEecCCH----HHHHHHHHHhCCCCceEEEe
Q 028808           81 FGLPGAYTGVCSNQHVPSYKNNIDKFKAKG---IDSVICVAVNDP----YVMNGWAEKLQAKDVIEFYG  142 (203)
Q Consensus        81 ~~f~~~~cp~C~~ehl~~l~~~~~~f~~~g---v~~vi~IS~d~~----~~~~~~~~~~~l~~~fplls  142 (203)
                      +.|+.+|||+|..  +  |.+   -++++|   +. +-.+..|..    .......+..+.. .+|.+.
T Consensus        40 vvy~~~~Cp~C~~--a--~k~---~L~~~~~~~i~-~~~vdvd~~~~~~~~~~~L~~~~g~~-tVP~vf   99 (129)
T 3ctg_A           40 FVAAKTYCPYCKA--T--LST---LFQELNVPKSK-ALVLELDEMSNGSEIQDALEEISGQK-TVPNVY   99 (129)
T ss_dssp             EEEECTTCHHHHH--H--HHH---HHTTSCCCGGG-EEEEEGGGSTTHHHHHHHHHHHHSCC-SSCEEE
T ss_pred             EEEECCCCCchHH--H--HHH---HHHhcCccCCC-cEEEEccccCCHHHHHHHHHHHhCCC-CCCEEE
Confidence            3478999999963  2  122   234556   66 556655421    2233445555553 355543

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=89.54  E-value=0.19  Score=40.71  Aligned_cols=58  Identities=7%  Similarity=0.011  Sum_probs=33.9

Q ss_pred             CeEEEEEeeCCC--CCCCCccchhhHHHhHHHHHH-cC---CcEEEEEecCCHHHHHHHHHHhCCCCceEE
Q 028808           76 KKVVIFGLPGAY--TGVCSNQHVPSYKNNIDKFKA-KG---IDSVICVAVNDPYVMNGWAEKLQAKDVIEF  140 (203)
Q Consensus        76 k~vVL~~f~~~~--cp~C~~ehl~~l~~~~~~f~~-~g---v~~vi~IS~d~~~~~~~~~~~~~l~~~fpl  140 (203)
                      ++ |++.||+.|  |+.|..- .+.+.++.+++.. +|   +. ++-+..++   ....++++++. .+|.
T Consensus        26 ~p-v~v~~~~~~~~c~~c~~~-~~~l~ela~~~~~~~~~~~v~-~~~vd~d~---~~~~~~~~gv~-~~Pt   89 (243)
T 2hls_A           26 NP-VEVHVFLSKSGCETCEDT-LRLMKLFEEESPTRNGGKLLK-LNVYYRES---DSDKFSEFKVE-RVPT   89 (243)
T ss_dssp             SC-EEEEEEECSSSCTTHHHH-HHHHHHHHHHSCEETTEESEE-EEEEETTT---THHHHHHTTCC-SSSE
T ss_pred             CC-EEEEEEeCCCCCCchHHH-HHHHHHHHHhccCCCCCceeE-EEEecCCc---CHHHHHhcCCC-cCCE
Confidence            44 455677888  9999754 4555665554211 12   54 55666554   24567778875 4543

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=89.41  E-value=0.29  Score=36.49  Aligned_cols=47  Identities=13%  Similarity=0.081  Sum_probs=28.5

Q ss_pred             CCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC-CHHHHHHHHHHhCCCCceEEEe
Q 028808           86 AYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN-DPYVMNGWAEKLQAKDVIEFYG  142 (203)
Q Consensus        86 ~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d-~~~~~~~~~~~~~l~~~fplls  142 (203)
                      .|||.|..- ..       -++++|+. +..+..+ ++....++.+..+.+ .+|.+.
T Consensus        48 ~~Cp~C~~a-k~-------~L~~~gv~-y~~vdI~~d~~~~~~L~~~~G~~-tvP~Vf   95 (135)
T 2wci_A           48 PSCGFSAQA-VQ-------ALAACGER-FAYVDILQNPDIRAELPKYANWP-TFPQLW   95 (135)
T ss_dssp             BSSHHHHHH-HH-------HHHTTCSC-CEEEEGGGCHHHHHHHHHHHTCC-SSCEEE
T ss_pred             CCCccHHHH-HH-------HHHHcCCc-eEEEECCCCHHHHHHHHHHHCCC-CcCEEE
Confidence            799999753 22       23456787 7777765 445455555555654 466654

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=86.29  E-value=2  Score=29.01  Aligned_cols=49  Identities=10%  Similarity=0.013  Sum_probs=25.9

Q ss_pred             EeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC-HHHHHHHHHHhC
Q 028808           82 GLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND-PYVMNGWAEKLQ  133 (203)
Q Consensus        82 ~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~-~~~~~~~~~~~~  133 (203)
                      .|..++||.|..-  .+=.+...-++++|+. ..-+..+. +....++.+..|
T Consensus         6 ly~~~~C~~c~~~--~~~~~ak~~L~~~~i~-~~~~di~~~~~~~~~l~~~~g   55 (93)
T 1t1v_A            6 VYSTSVTGSREIK--SQQSEVTRILDGKRIQ-YQLVDISQDNALRDEMRTLAG   55 (93)
T ss_dssp             EEECSSCSCHHHH--HHHHHHHHHHHHTTCC-CEEEETTSCHHHHHHHHHHTT
T ss_pred             EEEcCCCCCchhh--HHHHHHHHHHHHCCCc-eEEEECCCCHHHHHHHHHHhC
Confidence            3678999999310  1111122335567887 76776653 333334444444

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=83.78  E-value=0.41  Score=37.07  Aligned_cols=39  Identities=15%  Similarity=0.125  Sum_probs=28.3

Q ss_pred             CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEec
Q 028808           75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAV  119 (203)
Q Consensus        75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~  119 (203)
                      ++ ++|+-|+.-|||+|..- -|.+.++.+++   ++. +.-+..
T Consensus        22 ~~-~~vvef~d~~Cp~C~~~-~~~~~~~~~~~---~v~-~~~~p~   60 (185)
T 3feu_A           22 GM-APVTEVFALSCGHCRNM-ENFLPVISQEA---GTD-IGKMHI   60 (185)
T ss_dssp             CC-CSEEEEECTTCHHHHHH-GGGHHHHHHHH---TSC-CEEEEC
T ss_pred             CC-CEEEEEECCCChhHHHh-hHHHHHHHHHh---CCe-EEEEec
Confidence            45 56667888999999987 58888888777   455 544443

>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12

Probab=83.10  E-value=1  Score=32.57  Aligned_cols=65  Identities=6%  Similarity=-0.060  Sum_probs=46.2

Q ss_pred             EEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC----CHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCc
Q 028808           80 IFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN----DPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLG  155 (203)
Q Consensus        80 L~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d----~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~  155 (203)
                      +..|-..+||.|.+-        ...++++|+. .-.+...    +...+++|.++.+++  +.-+.+..+...+.+++.
T Consensus         2 i~iY~~~~C~~c~ka--------~~~L~~~gi~-~~~~di~~~~~~~~el~~~l~~~~~~--~~~l~n~~~~~~k~l~~~   70 (120)
T 3l78_A            2 VTLFLSPSCTSCRKA--------RAWLNRHDVV-FQEHNIMTSPLSRDELLKILSYTENG--TEDIISTRSKVFQKLDID   70 (120)
T ss_dssp             EEEEECSSCHHHHHH--------HHHHHHTTCC-EEEEETTTSCCCHHHHHHHHHHCSST--HHHHBCTTCHHHHHTTCC
T ss_pred             EEEEeCCCCHHHHHH--------HHHHHHcCCC-eEEEecccCCCcHHHHHHHHhhcCCC--HHHhhcCCcHHHHHcCCC
Confidence            346778899999764        2335567888 6666653    346788999988775  555667788888888864

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=82.36  E-value=3.5  Score=32.60  Aligned_cols=38  Identities=5%  Similarity=0.034  Sum_probs=30.6

Q ss_pred             ceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEee
Q 028808          137 VIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVE  185 (203)
Q Consensus       137 ~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~  185 (203)
                      .++...|.+..+++.||+..           .|+.++++ +|++....+.
T Consensus       186 ~v~~~~~~~~~l~~~f~v~~-----------~Pslvl~~~~g~~~~~~~~  224 (244)
T 3q6o_A          186 AVRRVLNTEANVVRKFGVTD-----------FPSCYLLFRNGSVSRVPVL  224 (244)
T ss_dssp             EEEEEETTCHHHHHHHTCCC-----------SSEEEEEETTSCEEECCCS
T ss_pred             EEEEEeCchHHHHHHcCCCC-----------CCeEEEEeCCCCeEeeccc
Confidence            37777788899999999863           47778889 9999988754

>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A

Probab=81.06  E-value=1.1  Score=32.90  Aligned_cols=65  Identities=5%  Similarity=-0.022  Sum_probs=43.8

Q ss_pred             EEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC----HHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCc
Q 028808           80 IFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND----PYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLG  155 (203)
Q Consensus        80 L~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~----~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~  155 (203)
                      +..|...+||.|.+- .       ..++++|+. +-.+..+.    ...+++|.++.+.+  +.-+.+..+...+.++..
T Consensus         3 i~lY~~~~C~~C~ka-~-------~~L~~~gi~-y~~~di~~~~~~~~el~~~l~~~~~~--~~~l~n~~~~~~k~l~~~   71 (132)
T 1z3e_A            3 VTLYTSPSCTSCRKA-R-------AWLEEHEIP-FVERNIFSEPLSIDEIKQILRMTEDG--TDEIISTRSKVFQKLNVN   71 (132)
T ss_dssp             EEEEECTTCHHHHHH-H-------HHHHHTTCC-EEEEETTTSCCCHHHHHHHHHTCSSC--GGGTBCTTSHHHHHHCCC
T ss_pred             EEEEeCCCChHHHHH-H-------HHHHHcCCc-eEEEEccCCCccHHHHHHHHHHcCCC--HHHhhcCCchHHHhcCcc
Confidence            345888999999754 2       234567888 66666542    35677888877764  444567777788887764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	203
d1xiya1	179	c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria p	1e-34
d1tp9a1	162	c.47.1.10 (A:1-162) Plant peroxiredoxin {Western b	2e-23
d1hd2a_	161	c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapien	5e-20
d1nm3a2	163	c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybr	5e-17
d1q98a_	164	c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus i	1e-06
d2zcta1	237	c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum perni	3e-05
d1prxa_	220	c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sa	4e-04
d1zyea1	158	c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22)	5e-04
d1uula_	194	c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxi	0.003

>d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 179

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score =  119 bits (298), Expect = 1e-34
 Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 8/165 (4%)

Query: 46  QDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDK 105
            DV      +  +G  ++F +    ++F  KK+++  LPGA+T  CS + +P Y+   D 
Sbjct: 13  IDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDY 72

Query: 106 F-KAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLG 164
           F K    D + C+  ND YV+  W + +  K  I++  D + SF  S+++  D S   +G
Sbjct: 73  FIKENNFDDIYCITNNDIYVLKSWFKSMDIKK-IKYISDGNSSFTDSMNMLVDKSNFFMG 131

Query: 165 PRSERWSAYVEDGRIKALNVEEAPSKM------KVSGGDVILGQI 203
            R  R+ A VE+  +  +  E+            +S  + +   +
Sbjct: 132 MRPWRFVAIVENNILVKMFQEKDKQHNIQTDPYDISTVNNVKEFL 176

>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Plant peroxiredoxin
species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]

 Score = 89.6 bits (221), Expect = 2e-23
 Identities = 55/171 (32%), Positives = 88/171 (51%), Gaps = 10/171 (5%)

Query: 33  ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCS 92
           A +AVG        D  L      D+    +        +  GKKV++FG+PGA+T  CS
Sbjct: 2   APIAVGD----VLPDGKLAYFDEQDQLQEVSVH-----SLVAGKKVILFGVPGAFTPTCS 52

Query: 93  NQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSL 152
            +HVP +     + K+KG+  ++C++VNDP+VM  WA+       ++F  D   ++  +L
Sbjct: 53  LKHVPGFIEKAGELKSKGVTEILCISVNDPFVMKAWAKSYPENKHVKFLADGSATYTHAL 112

Query: 153 DLGKDLSAALLGPRSERWSAYVEDGRIKALNVEEAPSKMKVSGGDVILGQI 203
            L  DL    LG RS R++  V+D ++KA N+E    +  VS  + IL  +
Sbjct: 113 GLELDLQEKGLGTRSRRFALLVDDLKVKAANIEG-GGEFTVSSAEDILKDL 162

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.7 bits (198), Expect = 5e-20
 Identities = 51/137 (37%), Positives = 77/137 (56%), Gaps = 2/137 (1%)

Query: 69  IKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGW 128
           + ++FKGKK V+FG+PGA+T  CS  H+P +    +  KAKG+  V C++VND +V   W
Sbjct: 25  LAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEW 84

Query: 129 AEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGP--RSERWSAYVEDGRIKALNVEE 186
               +A+  +    D  G+F K  DL  D S   +    R +R+S  V+DG +KALNVE 
Sbjct: 85  GRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEP 144

Query: 187 APSKMKVSGGDVILGQI 203
             + +  S    I+ Q+
Sbjct: 145 DGTGLTCSLAPNIISQL 161

>d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} Length = 163

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: N-terminal, Prx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

 Score = 73.0 bits (178), Expect = 5e-17
 Identities = 48/159 (30%), Positives = 82/159 (51%), Gaps = 9/159 (5%)

Query: 47  DVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKF 106
            V+  + R  D+ V    +     ++F  K V++F LPGA+T  CS+ H+P Y      F
Sbjct: 9   QVTF-RTRQGDKWVDVTTS-----ELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVF 62

Query: 107 KAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPR 166
           K  G+D ++ V+VND +VMN W E  +++++  F  D +G F + + +         G R
Sbjct: 63  KKYGVDDILVVSVNDTFVMNAWKEDEKSENIS-FIPDGNGEFTEGMGMLVGKEDLGFGKR 121

Query: 167 SERWSAYVEDGRIKALNVEEAPS--KMKVSGGDVILGQI 203
           S R+S  V++G ++ + +E        KVS  D +L  +
Sbjct: 122 SWRYSMLVKNGVVEKMFIEPNEPGDPFKVSDADTMLKYL 160

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]} Length = 164

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

 Score = 44.4 bits (104), Expect = 1e-06
 Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 7/111 (6%)

Query: 71  DIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAE 130
           + F  K+ V+   P   TGVC+   V  +     K        V+C++ + P+    +  
Sbjct: 38  NDFASKRKVLNIFPSIDTGVCA-TSVRKFNQQAAKLS---NTIVLCISADLPFAQARFCG 93

Query: 131 KLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYV-EDGRIK 180
               ++        + + H    LG D+    L   + R    + E   + 
Sbjct: 94  AEGIENAKTVSTFRNHALHS--QLGVDIQTGPLAGLTSRAVIVLDEQNNVL 142

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} Length = 237

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

 Score = 41.0 bits (95), Expect = 3e-05
 Identities = 22/122 (18%), Positives = 42/122 (34%), Gaps = 9/122 (7%)

Query: 71  DIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAE 130
            + +GK  V+F  P  +T VC+ + V   +   D  +      +I ++V+  +    W E
Sbjct: 25  YVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLG--VDLIGLSVDSVFSHIKWKE 82

Query: 131 KLQAKDVIEF----YGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEE 186
            ++    +        D  G+  + L L    SA                G I+ +    
Sbjct: 83  WIERHIGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGV---FIVDARGVIRTMLYYP 139

Query: 187 AP 188
             
Sbjct: 140 ME 141

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]} Length = 220

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 4e-04
 Identities = 14/93 (15%), Positives = 33/93 (35%), Gaps = 4/93 (4%)

Query: 70  KDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWA 129
            D       ++F  P  +T VC+ +          +F  + +  +   +++       W+
Sbjct: 22  HDFLGDSWGILFSHPRDFTPVCTTEL-GRAAKLAPEFAKRNVKLIAL-SIDSVEDHLAWS 79

Query: 130 EKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAAL 162
           + + A +  E        F    D  ++L+  L
Sbjct: 80  KDINAYNSEEPTEKLP--FPIIDDRNRELAILL 110

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]} Length = 158

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.1 bits (85), Expect = 5e-04
 Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 8/98 (8%)

Query: 60  VSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAV 119
           VS  F    + D FKGK +V+F  P  +T VC  + +       +         V+ V+V
Sbjct: 12  VSGEFKEISLDD-FKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCE--VVAVSV 68

Query: 120 NDPYVMNGWAEKLQ-----AKDVIEFYGDFDGSFHKSL 152
           +  +    W    +         I    D      +  
Sbjct: 69  DSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDY 106

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]} Length = 194

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 35.1 bits (80), Expect = 0.003
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 7/92 (7%)

Query: 73  FKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKL 132
           +KGK +V+F  P  +T VC  +          K  +     V+  +++  Y    W    
Sbjct: 31  YKGKWLVLFFYPMDFTFVCPTEICQFSDRV--KEFSDIGCEVLACSMDSEYSHLAWTSIE 88

Query: 133 QAKDVIE-----FYGDFDGSFHKSLDLGKDLS 159
           + +  +         D      KS  + K+  
Sbjct: 89  RKRGGLGQMNIPILADKTKCIMKSYGVLKEED 120

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	203
d1hd2a_	161	Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606	100.0
d1tp9a1	162	Plant peroxiredoxin {Western balsam poplar(Populus	100.0
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	100.0
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	100.0
d1xiya1	179	1-Cys peroxiredoxin {Malaria parasite (Plasmodium	100.0
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	100.0
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	100.0
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	100.0
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	100.0
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	100.0
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	100.0
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	100.0
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	99.98
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	99.98
d1nm3a2	163	N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus	99.98
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	99.98
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	99.97
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	99.97
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	99.97
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	99.97
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	99.97
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	99.96
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	99.96
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	99.94
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.94
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.93
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	99.92
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	99.91
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.91
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.88
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	99.86
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.85
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.83
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	99.82
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	99.79
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	99.78
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	99.62
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.57
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.34
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	98.96
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	98.94
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	98.86
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	98.84
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	98.77
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	98.77
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	98.75
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	98.73
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	98.72
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	98.72
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	98.7
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	98.7
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	98.67
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	98.64
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	98.63
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	98.63
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	98.61
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	98.57
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	98.47
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	98.46
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	98.42
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	98.36
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	98.35
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	98.32
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	98.1
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	97.93
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	97.92
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	97.65
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	97.47
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	97.45
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	97.32
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	96.36
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	96.21
d1wjka_	100	Thioredoxin-like structure containing protein C330	95.87
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	95.76
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	94.35
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	93.51
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	91.57
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	91.23
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	91.03
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	91.03
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	86.9
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	86.85

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-36  Score=233.93  Aligned_cols=159  Identities=35%  Similarity=0.601  Sum_probs=138.5

Q ss_pred             ccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCc
Q 028808           33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID  112 (203)
Q Consensus        33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~  112 (203)
                      +++++|++    ||+|+|.+.++   |     ++++|+++++||++||+|||++|||+|++||++.+.+.+++|+++|++
T Consensus         1 apikVGd~----aP~f~l~~~~~---~-----~~v~l~d~~~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~g~~   68 (161)
T d1hd2a_           1 APIKVGDA----IPAVEVFEGEP---G-----NKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQ   68 (161)
T ss_dssp             CCCCTTCB----CCCCEEECSST---T-----CEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCC
T ss_pred             CCCCCCCc----CCCeEEEecCC---C-----cEEEhHHHhCCCeEEEEEEeccccccchhhhhhHHHhhhHHHHHcCCe
Confidence            46899999    69999986542   3     889999988999999999999999999887789999999999999987


Q ss_pred             EEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccc--cCCCCcceEEEEEeCCEEEEEEeecCCCC
Q 028808          113 SVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAA--LLGPRSERWSAYVEDGRIKALNVEEAPSK  190 (203)
Q Consensus       113 ~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~--g~~~~~~r~tfIIddG~I~~~~~~~~~~~  190 (203)
                      +|+++|.|++..+++|.++++.+.+|++++|++++++++||+..+....  +++.++.|+++|++||+|+++++++++.+
T Consensus        69 ~i~~~s~~~~~~~~~~~~~~~~~~~~~llsD~~~~~a~~~g~~~~~~~~g~~~~~~s~r~~~I~~~G~I~~~~ve~~~~~  148 (161)
T d1hd2a_          69 VVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTG  148 (161)
T ss_dssp             EEEEEESSCHHHHHHHHHHTTCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEETTEEEEEEECTTSSC
T ss_pred             EEEEEecCchhhhhhhhhhcccccccccccCCcceeeeeeeeeeccccCccccccEEeEEEEEECCCEEEEEEEeCCCCC
Confidence            5778999999999999999987556999999999999999998765432  24567788877777999999999988777


Q ss_pred             cccCCHHHHHhcC
Q 028808          191 MKVSGGDVILGQI  203 (203)
Q Consensus       191 ~~~~~a~~vL~~l  203 (203)
                      .+.++|++||++|
T Consensus       149 ~~~s~a~~vL~~L  161 (161)
T d1hd2a_         149 LTCSLAPNIISQL  161 (161)
T ss_dssp             SSTTSHHHHHHHC
T ss_pred             CCcCcHHHHHhcC
Confidence            8889999999987

>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Plant peroxiredoxin
species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]

Probab=100.00  E-value=1e-35  Score=233.25  Aligned_cols=162  Identities=33%  Similarity=0.643  Sum_probs=140.5

Q ss_pred             cccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCC
Q 028808           32 YASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGI  111 (203)
Q Consensus        32 ~~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv  111 (203)
                      |+++++|++    ||+|+|...+.     ++..++++|+++++||++||+|||++|||+|+.||++.+.+..++++++|.
T Consensus         1 M~~l~vGd~----~Pdf~l~~~~~-----~~~~~~~~l~d~~~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~~g~   71 (162)
T d1tp9a1           1 MAPIAVGDV----LPDGKLAYFDE-----QDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGV   71 (162)
T ss_dssp             CCCCCTTCB----CCCCEEEEECT-----TSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCC----CCCeEEEeecC-----CCCceEEEHHHHhCCCeEEEEEEecccchhhhhhcchHHHHhhhHHHHcCC
Confidence            568999999    69999975432     112389999998899999999999999999998878888888999999987


Q ss_pred             cEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEeCCEEEEEEeecCCCCc
Q 028808          112 DSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEEAPSKM  191 (203)
Q Consensus       112 ~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~~~~~~  191 (203)
                      .+|++||+|+++.+++|.++.+...++++++|++++++++||+..+....|++.++.|++||||||+|+++++++ ++.+
T Consensus        72 ~~v~~isvd~~~~~~~~~~~~~~~~~~~~lsD~~~~~~~~~g~~~~~~~~g~g~~~~R~tfiIddg~I~~~~ve~-~~~~  150 (162)
T d1tp9a1          72 TEILCISVNDPFVMKAWAKSYPENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVDDLKVKAANIEG-GGEF  150 (162)
T ss_dssp             CCEEEEESSCHHHHHHHHHTCTTCSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEETTEEEEEEECS-SSCC
T ss_pred             cceeeeeccchhhhhhhhhhcccccccccccchhhHHHhhhhhccccccccCCcEEEEEEEEEECCEEEEEEEEC-CCCC
Confidence            559999999999999999999865469999999999999999987655556667789999999999999999975 4567


Q ss_pred             ccCCHHHHHhcC
Q 028808          192 KVSGGDVILGQI  203 (203)
Q Consensus       192 ~~~~a~~vL~~l  203 (203)
                      ++++|++||++|
T Consensus       151 ~~s~ae~vLk~L  162 (162)
T d1tp9a1         151 TVSSAEDILKDL  162 (162)
T ss_dssp             SSCSHHHHHTTC
T ss_pred             ccCCHHHHHhcC
Confidence            889999999987

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=100.00  E-value=1e-34  Score=228.84  Aligned_cols=145  Identities=18%  Similarity=0.367  Sum_probs=123.3

Q ss_pred             cCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEE
Q 028808           36 AVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVI  115 (203)
Q Consensus        36 ~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi  115 (203)
                      .+|++    ||+|++++..|+.     ++++++|++ ++||++||+|||++|||+|+.| +++|++.+++|+++|++ |+
T Consensus         2 lvG~~----aP~F~l~~~~~g~-----~~~~vslsd-~~GK~vvl~F~p~~~~p~C~~e-~~~~~~~~~~f~~~g~~-vv   69 (166)
T d1we0a1           2 LIGTE----VQPFRAQAFQSGK-----DFFEVTEAD-LKGKWSIVVFYPADFSFVCPTE-LEDVQKEYAELKKLGVE-VY   69 (166)
T ss_dssp             CTTCB----CCCCEEEEECSSS-----CCEEEETTT-TSSSEEEEEECSCTTCSSCTHH-HHHHHHHHHHHHHTTEE-EE
T ss_pred             CCCCc----CCCCEEeeecCCc-----ceeEeeHHH-hCCCeEEEEEecccCCcHHHHH-HHHHHHHHHhhcccceE-EE
Confidence            37899    7999999876522     348899999 5999999999999999999999 99999999999999998 99


Q ss_pred             EEecCCHHHHHHHHHHh----CCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCC
Q 028808          116 CVAVNDPYVMNGWAEKL----QAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSK  190 (203)
Q Consensus       116 ~IS~d~~~~~~~~~~~~----~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~  190 (203)
                      +||+|+++++++|++++    +++  ||+++|++++++++||+.....  |   .+.|++|||| +|+|+++++++.+.+
T Consensus        70 ~IS~D~~~~~~~~~~~~~~~~~~~--fpll~D~~~~v~~~ygv~~~~~--~---~~~r~tfvID~~G~I~~~~i~~~~~~  142 (166)
T d1we0a1          70 SVSTDTHFVHKAWHENSPAVGSIE--YIMIGDPSQTISRQFDVLNEET--G---LADRGTFIIDPDGVIQAIEINADGIG  142 (166)
T ss_dssp             EEESSCHHHHHHHHHSCHHHHTCC--SEEEECTTCHHHHHTTCEETTT--T---EECEEEEEECTTSBEEEEEEECTTSC
T ss_pred             ecccccHHHHHHHhhhhhhhcccc--cccccCcccHHHHHhCCCcccc--C---cccceEEEECCCCcEEEEEEcCCCCC
Confidence            99999999999998775    676  9999999999999999976432  2   3579999999 999999999876543


Q ss_pred             cccCCHHHHHhc
Q 028808          191 MKVSGGDVILGQ  202 (203)
Q Consensus       191 ~~~~~a~~vL~~  202 (203)
                         .+++++|+.
T Consensus       143 ---r~~~eil~~  151 (166)
T d1we0a1         143 ---RDASTLINK  151 (166)
T ss_dssp             ---CCTTHHHHH
T ss_pred             ---CCHHHHHHH
Confidence               355555543

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.3e-34  Score=227.88  Aligned_cols=152  Identities=15%  Similarity=0.270  Sum_probs=127.9

Q ss_pred             cccCCCccccCCCceEEeccccccCC------CCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHH
Q 028808           34 SVAVGSDIVSAAQDVSLQKARTWDEG------VSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFK  107 (203)
Q Consensus        34 ~~~~G~~~~~~APdf~l~~~~g~~~G------~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~  107 (203)
                      ++++|++    ||+|+|++..|+...      .+..++.++|++ ++||++||+|||++|||+|+.| ++.|++++++|+
T Consensus         2 ~l~vGd~----aPdF~l~~~~g~~~~~~~~~~~~~~~~~~~l~d-~~GK~vvl~f~p~~~~p~C~~~-~~~~~~~~~~~~   75 (169)
T d2bmxa1           2 LLTIGDQ----FPAYQLTALIGGDLSKVDAKQPGDYFTTITSDE-HPGKWRVVFFWPKDFTFVCPTE-IAAFSKLNDEFE   75 (169)
T ss_dssp             BCCTTCB----CCCCEEEEECSSCGGGSCCSSGGGGEEEEETTS-STTCEEEEEECSCTTSCCCHHH-HHHHHHTHHHHH
T ss_pred             CCCCCCC----CCCCEEeeccCCcccccccccccccccEeeHHH-HCCCeEEEEEecCCCCcccccc-cccccccccccc
Confidence            5899999    699999988762100      011237899999 5999999999999999999999 999999999999


Q ss_pred             HcCCcEEEEEecCCHHHHHHHHHHhC----CCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEE
Q 028808          108 AKGIDSVICVAVNDPYVMNGWAEKLQ----AKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKAL  182 (203)
Q Consensus       108 ~~gv~~vi~IS~d~~~~~~~~~~~~~----l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~  182 (203)
                      ++|++ +++||.|+++.+++|.++++    ++  ||+++|++++++++||+....      .++.|++|||| +|+|+|+
T Consensus        76 ~~g~~-vv~is~d~~~~~~~~~~~~~~~~~~~--f~ll~D~~~~v~~~ygv~~~~------~~~~r~~fvID~~G~I~~~  146 (169)
T d2bmxa1          76 DRDAQ-ILGVSIDSEFAHFQWRAQHNDLKTLP--FPMLSDIKRELSQAAGVLNAD------GVADRVTFIVDPNNEIQFV  146 (169)
T ss_dssp             TTTEE-EEEEESSCHHHHHHHHHHCTTGGGCC--SCEEECTTSHHHHHHTCBCTT------SSBCEEEEEECTTSBEEEE
T ss_pred             ccCcc-eeeccccchhhhhhhcccccccccce--EEEEeccHHHHHHHcCCCccC------CccceeEEEEcCCCEEEEE
Confidence            99998 99999999999999999886    65  999999999999999996431      24679999999 9999999


Q ss_pred             EeecCCCCcccCCHHHHHhcC
Q 028808          183 NVEEAPSKMKVSGGDVILGQI  203 (203)
Q Consensus       183 ~~~~~~~~~~~~~a~~vL~~l  203 (203)
                      ++++.+.   ..+++++|+.|
T Consensus       147 ~~~~~~~---~~~~~evl~~l  164 (169)
T d2bmxa1         147 SATAGSV---GRNVDEVLRVL  164 (169)
T ss_dssp             EEECTTC---CCCHHHHHHHH
T ss_pred             EEcCCCC---CCCHHHHHHHH
Confidence            9987543   24778887653

>d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=2.6e-34  Score=228.72  Aligned_cols=163  Identities=26%  Similarity=0.491  Sum_probs=140.0

Q ss_pred             cCCCccccCCCceEEeccc------cccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHH-HH
Q 028808           36 AVGSDIVSAAQDVSLQKAR------TWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKF-KA  108 (203)
Q Consensus        36 ~~G~~~~~~APdf~l~~~~------g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f-~~  108 (203)
                      ++|+.+    |+.++...-      .+.+|.+.++++++++++|+||++||+++||+|+|+|+.+|+|.|.+.|++| ++
T Consensus         1 k~~d~i----P~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~f~~KkVvl~~vPgAFTp~Cs~~hlp~y~~~~d~f~k~   76 (179)
T d1xiya1           1 KENDLI----PNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKE   76 (179)
T ss_dssp             CTTCBC----CCCEEEEEHHHHTC--------CCEEEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTT
T ss_pred             CCCCcC----CCeEEEEEecccccccccCCCCCCceEeeHHHHhCCCeEEEEEcccccCCccchhhCcchhhhHHHHHHh
Confidence            468886    998875210      0122445567899999999999999999999999999999999999999999 68


Q ss_pred             cCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEeCCEEEEEEeecCC
Q 028808          109 KGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEEAP  188 (203)
Q Consensus       109 ~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~~~  188 (203)
                      +|+++|++||+||++++++|.++++++ ++.+++|++++++++||+..+....|+|.|++|+++|||||+|.+.++++++
T Consensus        77 ~gvd~I~~iSvnD~fv~~aW~~~~~~~-~I~~lsD~~g~f~k~lg~~~d~~~~g~G~Rs~R~a~iiddg~I~~~~vE~~~  155 (179)
T d1xiya1          77 NNFDDIYCITNNDIYVLKSWFKSMDIK-KIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVENNILVKMFQEKDK  155 (179)
T ss_dssp             SCCSEEEEEESSCHHHHHHHHHHTTCC-SSEEEECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEETTEEEEEEECSSC
T ss_pred             cCCceEEEEecCCHHHHHHHHhhcCcc-eEEEeeCCchHHHHhhhcccccccCCCeeEEeeEEEEEECCEEEEEEEeCCC
Confidence            899889999999999999999999997 6899999999999999998877777899999999999999999999998754


Q ss_pred             C------CcccCCHHHHHhcC
Q 028808          189 S------KMKVSGGDVILGQI  203 (203)
Q Consensus       189 ~------~~~~~~a~~vL~~l  203 (203)
                      .      .+++++|++||++|
T Consensus       156 ~~~~~~dp~~vSsae~iL~~L  176 (179)
T d1xiya1         156 QHNIQTDPYDISTVNNVKEFL  176 (179)
T ss_dssp             CTTCSSCCCSTTSHHHHHHHH
T ss_pred             CCCCCCCCcccCCHHHHHHHH
Confidence            3      36889999999986

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6e-34  Score=222.53  Aligned_cols=141  Identities=21%  Similarity=0.348  Sum_probs=121.3

Q ss_pred             CCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHH
Q 028808           44 AAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPY  123 (203)
Q Consensus        44 ~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~  123 (203)
                      .||+|++++..+      ++++++||+| ++||++||+|||++|||+|+.| ++.|++++++|++.|++ |+|||+|+++
T Consensus         2 ~AP~F~l~~~~~------~~~~~vsL~d-~~Gk~vVL~Fyp~~~tp~C~~e-~~~~~~~~~~~~~~~~~-vigIS~d~~~   72 (158)
T d1zyea1           2 HAPYFKGTAVVS------GEFKEISLDD-FKGKYLVLFFYPLDFTFVCPTE-IIAFSDKASEFHDVNCE-VVAVSVDSHF   72 (158)
T ss_dssp             BCCCCEEEEECS------SSEEEEEGGG-GTTSEEEEEECSCTTCSSSHHH-HHHHHHHHHHHHHTTEE-EEEEESSCHH
T ss_pred             CCCCCccceeeC------CCccEEeHHH-hCCCeEEEEEeehhcCCccccc-hhhHHHhHHHhhcCCce-EEeccCcCHH
Confidence            489999987642      1238999999 5999999999999999999999 99999999999999998 9999999999


Q ss_pred             HHHHHHHHh-------CCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCCcccCC
Q 028808          124 VMNGWAEKL-------QAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSKMKVSG  195 (203)
Q Consensus       124 ~~~~~~~~~-------~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~~~~~~  195 (203)
                      .|++|+++.       +++  ||+++|++++++++||+.....  |+   +.|++|||| +|+|+|+++++.+.   ..+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~--f~llsD~~~~~~~~ygv~~~~~--g~---~~R~tfvID~~G~I~~~~i~~~~~---~~~  142 (158)
T d1zyea1          73 SHLAWINTPRKNGGLGHMN--IALLSDLTKQISRDYGVLLEGP--GL---ALRGLFIIDPNGVIKHLSVNDLPV---GRS  142 (158)
T ss_dssp             HHHHHHTSCGGGTCCCSCS--SEEEECTTSHHHHHTTCEETTT--TE---ECEEEEEECTTSBEEEEEEECTTC---CCC
T ss_pred             HHHHHHhhhHhhccccccc--cccccccccHHHHHHHhccccC--Cc---cccEEEEECCCCEEEEEEEeCCCC---CCC
Confidence            999999985       565  9999999999999999976422  22   579999999 99999999987543   257


Q ss_pred             HHHHHhcC
Q 028808          196 GDVILGQI  203 (203)
Q Consensus       196 a~~vL~~l  203 (203)
                      ++++|+.|
T Consensus       143 ~~EiL~~l  150 (158)
T d1zyea1         143 VEETLRLV  150 (158)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88888753

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=100.00  E-value=2.6e-33  Score=221.46  Aligned_cols=147  Identities=18%  Similarity=0.292  Sum_probs=124.3

Q ss_pred             ccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCC-eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcE
Q 028808           35 VAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGK-KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDS  113 (203)
Q Consensus        35 ~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk-~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~  113 (203)
                      +.+|++    ||||+|++.+|+    +...+.++|+|+ +|| ++||+|||++|||+|+.| ++.|++.+++|+++|++ 
T Consensus         1 ~lVG~~----APdF~l~~~~g~----~~~~~~~~Lsd~-~gk~~vvl~FyP~~~tp~C~~e-~~~~~~~~~~f~~~g~~-   69 (170)
T d1zofa1           1 MVVTKL----APDFKAPAVLGN----NEVDEHFELSKN-LGKNGVILFFWPKDFTFVCPTE-IIAFDKRVKDFHEKGFN-   69 (170)
T ss_dssp             CCTTSB----CCCCEEEEECTT----SCEEEEEETTTS-CCSSEEEEEECSCTTCSSCCTH-HHHHHHTHHHHHHTTEE-
T ss_pred             CCCCCc----CCCcCcccccCC----CccceEEEeHHH-cCCCEEEEEEEccccCCcCHHH-HHHHHHhHHhhccCCee-
Confidence            357998    899999998761    111267999995 775 788889999999999999 99999999999999998 


Q ss_pred             EEEEecCCHHHHHHHHHHh-------CCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEee
Q 028808          114 VICVAVNDPYVMNGWAEKL-------QAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVE  185 (203)
Q Consensus       114 vi~IS~d~~~~~~~~~~~~-------~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~  185 (203)
                      |++||+|+.+.+++|+++.       +++  ||+++|++++++++||+....   |   .+.|++|||| ||+|+|++++
T Consensus        70 Vvgis~d~~~~~~~~~~~~~~~~~~~~~~--~~~l~D~~~~v~~~ygv~~~~---~---~~~r~tfvID~~G~I~~~~~~  141 (170)
T d1zofa1          70 VIGVSIDSEQVHFAWKNTPVEKGGIGQVS--FPMVADITKSISRDYDVLFEE---A---IALRGAFLIDKNMKVRHAVIN  141 (170)
T ss_dssp             EEEEESSCHHHHHHHHTSCGGGTCCCCCS--SCEEECTTSHHHHHTTCEETT---T---EECEEEEEEETTTEEEEEEEE
T ss_pred             EecccccchhhHHHHHhhhhhcccccCcc--cccccccccHHHHHcCCCccc---c---ceeEEEEEEcCCCeEEEEEEe
Confidence            9999999999999999886       454  999999999999999997542   2   2579999999 9999999998


Q ss_pred             cCCCCcccCCHHHHHhcC
Q 028808          186 EAPSKMKVSGGDVILGQI  203 (203)
Q Consensus       186 ~~~~~~~~~~a~~vL~~l  203 (203)
                      +.+.   ..+++++|+.|
T Consensus       142 ~~~~---~~~~~eiL~~l  156 (170)
T d1zofa1         142 DLPL---GRNADEMLRMV  156 (170)
T ss_dssp             SSSC---CCHHHHHHHHH
T ss_pred             CCCC---CCCHHHHHHHH
Confidence            7543   35788888753

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=1.5e-33  Score=227.56  Aligned_cols=146  Identities=19%  Similarity=0.298  Sum_probs=123.5

Q ss_pred             ccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEE
Q 028808           35 VAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSV  114 (203)
Q Consensus        35 ~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~v  114 (203)
                      .+.|++    ||||+++...+     ++++++++|+| ++||++||+|||++|||+|+.| ++.|++++++|+++|++ |
T Consensus         3 ae~~~P----APdFtl~a~l~-----d~~g~~vsLsd-~~GK~vVL~FyP~~~t~~C~~E-~~~f~~~~~~f~~~g~~-V   70 (194)
T d1uula_           3 AEDLHP----APDFNETALMP-----NGTFKKVALTS-YKGKWLVLFFYPMDFTFVCPTE-ICQFSDRVKEFSDIGCE-V   70 (194)
T ss_dssp             CCTTSB----CCCCEEEEECT-----TSCEEEEEGGG-GTTSEEEEEECSCTTCSHHHHH-HHHHHHTHHHHHTTTEE-E
T ss_pred             cccCCC----CCCCccccccc-----CCCCcEEehHH-hCCCeEEEEEEeCCccccchhh-hhHHHhhhhhhccCceE-E
Confidence            356777    89999875432     12238999999 5999999999999999999999 99999999999999998 9


Q ss_pred             EEEecCCHHHHHHHHHHh-------CCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808          115 ICVAVNDPYVMNGWAEKL-------QAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       115 i~IS~d~~~~~~~~~~~~-------~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~  186 (203)
                      ++||.|+.+++++|.+++       +++  ||+++|++++++++||+..+..  |   .+.|+||||| +|+|+|+++++
T Consensus        71 lgIS~Ds~~s~~~~~~~~~~~~~~~~l~--fpllsD~~~~v~~~ygv~~~~~--~---~~~R~tfvID~~G~I~~~~~~~  143 (194)
T d1uula_          71 LACSMDSEYSHLAWTSIERKRGGLGQMN--IPILADKTKCIMKSYGVLKEED--G---VAYRGLFIIDPKQNLRQITVND  143 (194)
T ss_dssp             EEEESSCHHHHHHHHHSCGGGTCCCSCS--SCEEECTTCHHHHHHTCEETTT--T---EECEEEEEECTTSBEEEEEEEC
T ss_pred             EEEecCchhhhhhhhhhhhhhccccCCC--cceeeCCcchHHHHcCCeeccC--C---ceEEEEEEECCCCeEEEEEEec
Confidence            999999999999999876       354  9999999999999999976432  2   3679999999 99999999987


Q ss_pred             CCCCcccCCHHHHHhc
Q 028808          187 APSKMKVSGGDVILGQ  202 (203)
Q Consensus       187 ~~~~~~~~~a~~vL~~  202 (203)
                      ...   ..+.+++|+.
T Consensus       144 ~~~---~r~~~E~Lr~  156 (194)
T d1uula_         144 LPV---GRDVDEALRL  156 (194)
T ss_dssp             TTB---CCCHHHHHHH
T ss_pred             CCC---CcCHHHHHHH
Confidence            543   2578887764

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=100.00  E-value=4.5e-34  Score=221.56  Aligned_cols=150  Identities=16%  Similarity=0.373  Sum_probs=130.6

Q ss_pred             cccCCCccccCCCceEEeccccccCCCCCCceeeeccccc-CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCc
Q 028808           34 SVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIF-KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID  112 (203)
Q Consensus        34 ~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~-~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~  112 (203)
                      ++++|++    ||+|+|++.+|         +.++|+++. +||++||+|||++|||+|+.| ++.+++++++|++.|+.
T Consensus         1 mi~vG~~----aPdF~L~~~~G---------~~~~Lsd~~~~gk~vvl~f~~~~~cp~C~~~-~~~l~~~~~~~~~~~~~   66 (160)
T d2cx4a1           1 LVELGEK----APDFTLPNQDF---------EPVNLYEVLKRGRPAVLIFFPAAFSPVCTKE-LCTFRDKMAQLEKANAE   66 (160)
T ss_dssp             CCCTTSB----CCCCEECCTTS---------CCEEHHHHHTTSSCEEEEECSCTTCHHHHHH-HHHHHHTCTTTSTTCCE
T ss_pred             CCcCCCC----CcCeEeECCCC---------CEEehHHHhhCCCEEEEEecccccCCchhhh-hhhhhcccccccccccc
Confidence            4789999    79999999876         899999953 789999999999999999999 99999999999999998


Q ss_pred             EEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCCc
Q 028808          113 SVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSKM  191 (203)
Q Consensus       113 ~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~~  191 (203)
                       |++||+|+++.+++|.++++++  |++++|++++++++||+..... .+....+.|++|||| +|+|+++++++++  .
T Consensus        67 -vv~is~d~~~~~~~~~~~~~~~--~~~l~D~~~~~~~~~gv~~~~~-~~~~~~~~~~~flId~~G~I~~~~~~~~~--~  140 (160)
T d2cx4a1          67 -VLAISVDSPWCLKKFKDENRLA--FNLLSDYNREVIKLYNVYHEDL-KGLKMVAKRAVFIVKPDGTVAYKWVTDNP--L  140 (160)
T ss_dssp             -EEEEESSCHHHHHHHHHHHTCS--SEEEECTTSHHHHHTTCEEEEE-TTEEEEECCEEEEECTTSBEEEEEECSST--T
T ss_pred             -cccccccchhhhhhhcccceee--EEEeecCCcchHHHcCcccccc-ccccccceeeEEEEcCCCEEEEEEEeCCC--C
Confidence             9999999999999999999997  9999999999999999986432 122223568999999 9999999998765  3


Q ss_pred             ccCCHHHHHhcC
Q 028808          192 KVSGGDVILGQI  203 (203)
Q Consensus       192 ~~~~a~~vL~~l  203 (203)
                      +..+.+++|+.|
T Consensus       141 ~~~~~~eil~~l  152 (160)
T d2cx4a1         141 NEPDYDEVVREA  152 (160)
T ss_dssp             CCCCHHHHHHHH
T ss_pred             CCCCHHHHHHHH
Confidence            467888888753

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=2.2e-33  Score=225.30  Aligned_cols=144  Identities=19%  Similarity=0.332  Sum_probs=124.9

Q ss_pred             CCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEE
Q 028808           37 VGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVIC  116 (203)
Q Consensus        37 ~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~  116 (203)
                      +|++    ||+|+++...+      +++++++|+| ++||++||+|||++|||+|+.| ++.|++.+++|+++|++ |++
T Consensus         3 Ig~~----aP~F~~~a~~~------g~~~~vsLsd-~kGk~vVL~FyP~~~tp~C~~e-~~~f~~~~~~f~~~~~~-v~g   69 (186)
T d1n8ja_           3 INTK----IKPFKNQAFKN------GEFIEVTEKD-TEGRWSVFFFYPADFTFVSPTE-LGDVADHYEELQKLGVD-VYS   69 (186)
T ss_dssp             TTCB----CCCCEEEEEET------TEEEEEEHHH-HTTSEEEEEECSCTTCSHHHHH-HHHHHHHHHHHHHTTEE-EEE
T ss_pred             CCCc----CCCCEeeeeeC------CeeEEEeHHH-hCCCeEEEEEEeccCCCccHHH-HHHHHHhhhhcccccEE-EEe
Confidence            6888    69999987542      2347899999 5999999999999999999999 99999999999999998 999


Q ss_pred             EecCCHHHHHHHHHHhC----CCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCCc
Q 028808          117 VAVNDPYVMNGWAEKLQ----AKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSKM  191 (203)
Q Consensus       117 IS~d~~~~~~~~~~~~~----l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~~  191 (203)
                      ||+|++++|++|+++.+    ++  ||+++|++++++++||+..+..  |   .+.|++|||| +|+|+++++++...  
T Consensus        70 IS~Ds~~sh~~f~~~~~~~~~~~--fpllsD~~~~v~~~yGv~~~~~--g---~~~r~tfiID~~G~Ir~~~v~~~~~--  140 (186)
T d1n8ja_          70 VSTDTHFTHKAWHSSSETIAKIK--YAMIGDPTGALTRNFDNMREDE--G---LADRATFVVDPQGIIQAIEVTAEGI--  140 (186)
T ss_dssp             EESSCHHHHHHHHHHCTTGGGCC--SEEEECTTSHHHHHTTCEETTT--T---EECEEEEEECTTSBEEEEEEECTTB--
T ss_pred             ccccCHHHHHHHhcccccccccc--ccccccHHHHHHHHhCCCcccC--C---cceeeEEEECchheEEEEeecCCCc--
Confidence            99999999999999875    65  9999999999999999986432  2   2569999999 99999999987543  


Q ss_pred             ccCCHHHHHhcC
Q 028808          192 KVSGGDVILGQI  203 (203)
Q Consensus       192 ~~~~a~~vL~~l  203 (203)
                       ..+++++|+.|
T Consensus       141 -~r~~~eiL~~l  151 (186)
T d1n8ja_         141 -GRDASDLLRKI  151 (186)
T ss_dssp             -CCCHHHHHHHH
T ss_pred             -ccCHHHHHHHH
Confidence             46888888753

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-33  Score=226.27  Aligned_cols=148  Identities=21%  Similarity=0.357  Sum_probs=126.4

Q ss_pred             cccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCC
Q 028808           32 YASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGI  111 (203)
Q Consensus        32 ~~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv  111 (203)
                      ...+++|++    ||+|+|+...+      ++++.++|+| ++||++||+|||++|||+|+.| ++.|++++++|+++|+
T Consensus         2 s~~~~VG~~----AP~F~l~~~~d------~~~~~v~L~d-~~Gk~~vL~FyP~~~tp~C~~e-~~~~~~~~~~f~~~g~   69 (197)
T d1qmva_           2 SGNARIGKP----APDFKATAVVD------GAFKEVKLSD-YKGKYVVLFFYPLDFTFVCPTE-IIAFSNRAEDFRKLGC   69 (197)
T ss_dssp             BTTBCTTSB----CCCCEEEEEET------TEEEEEEGGG-GTTSEEEEEECSCTTSSHHHHH-HHHHHHTHHHHHTTTE
T ss_pred             CCCCcCCCc----CCCCCCcceeC------CCCcEEeHHH-hCCCeEEEEEecccccccchhh-hHHHHHHHHHhccCCc
Confidence            356899999    79999986531      1238899999 5999999999999999999999 9999999999999999


Q ss_pred             cEEEEEecCCHHHHHHHHHHh-------CCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEE
Q 028808          112 DSVICVAVNDPYVMNGWAEKL-------QAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALN  183 (203)
Q Consensus       112 ~~vi~IS~d~~~~~~~~~~~~-------~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~  183 (203)
                      . |++||.|+++++++|+++.       +++  ||+++|++++++++||+.....  |   .+.|++|||| +|+|++++
T Consensus        70 ~-vigIS~D~~~~~~~~~~~~~~~~~~~~~~--fpll~D~~~~va~~ygv~~~~~--g---~~~R~tfiID~~g~Ir~~~  141 (197)
T d1qmva_          70 E-VLGVSVDSQFTHLAWINTPRKEGGLGPLN--IPLLADVTRRLSEDYGVLKTDE--G---IAYRGLFIIDGKGVLRQIT  141 (197)
T ss_dssp             E-EEEEESSCHHHHHHHHTSCGGGTCCCSCS--SCEEECTTCHHHHHTTCEETTT--T---EECEEEEEECTTSBEEEEE
T ss_pred             E-EEEEecCCHHHHHhhhcchhhhcCcCCCc--cceEeccchHHHHHhCCCcccC--C---eeeEEEEEECCCCcEEEEE
Confidence            9 9999999999999999875       465  9999999999999999976422  2   3679999999 99999999


Q ss_pred             eecCCCCcccCCHHHHHhc
Q 028808          184 VEEAPSKMKVSGGDVILGQ  202 (203)
Q Consensus       184 ~~~~~~~~~~~~a~~vL~~  202 (203)
                      +++.+.   ..+++++|+.
T Consensus       142 ~~~~~~---~r~~~E~lr~  157 (197)
T d1qmva_         142 VNDLPV---GRSVDEALRL  157 (197)
T ss_dssp             EECTTB---CCCHHHHHHH
T ss_pred             ecCCCc---ccCHHHHHHH
Confidence            987653   2577777654

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=100.00  E-value=5.5e-33  Score=218.09  Aligned_cols=149  Identities=15%  Similarity=0.258  Sum_probs=122.5

Q ss_pred             cccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcE
Q 028808           34 SVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDS  113 (203)
Q Consensus        34 ~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~  113 (203)
                      .+++|++    ||+|++...-++.+|     ++++|+| ++||++||+|||++|||+|+.| ++.|++.+++|+++|++ 
T Consensus         2 ~~kvG~~----APdF~~~~~l~d~~g-----~~vsLsd-~~GK~vVl~F~p~~~c~~C~~e-~~~l~~~~~~~~~~~~~-   69 (167)
T d1e2ya_           2 AAKLNHP----APEFDDMALMPNGTF-----KKVSLSS-YKGKYVVLFFYPMDFTFVCPTE-IIQFSDDAKRFAEINTE-   69 (167)
T ss_dssp             CCCTTSB----CCCCEEEEECSSSCE-----EEEEGGG-GTTSEEEEEECSCSSCSSCCHH-HHHHHHTHHHHHTTTEE-
T ss_pred             CccCCCC----CCCCcccccccCCCC-----cEEeHHH-HCCCeEEEEEcccccccccchh-hHHHHHHHHHhhcCceE-
Confidence            3689999    799996543111122     8999999 5999999988899999999999 99999999999999998 


Q ss_pred             EEEEecCCHHHHHHHHHHhCC-----CCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecC
Q 028808          114 VICVAVNDPYVMNGWAEKLQA-----KDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEA  187 (203)
Q Consensus       114 vi~IS~d~~~~~~~~~~~~~l-----~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~  187 (203)
                      |++||+|+++.+.+|.++...     ..+|++++|+++++++.||+.....  |   .+.|++|||| +|+|+++++++.
T Consensus        70 v~~is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~y~v~~~~~--g---~~~r~tfvID~~G~Ir~~~~~~~  144 (167)
T d1e2ya_          70 VISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLDEDS--G---VAYRGVFIIDPNGKLRQIIINDM  144 (167)
T ss_dssp             EEEEESSCHHHHHHHHHSCGGGTCCCCCSSCEEECTTCHHHHHHTCEETTT--T---EECEEEEEECTTSBEEEEEEECT
T ss_pred             EEeecCCcHHhHHHHHhhHHHhcccccccccccccchhHHHHHcCCCcccC--C---CceeEEEEECCCCEEEEEEEcCC
Confidence            999999999999999987631     1259999999999999999975422  2   3579999999 999999999875


Q ss_pred             CCCcccCCHHHHHhc
Q 028808          188 PSKMKVSGGDVILGQ  202 (203)
Q Consensus       188 ~~~~~~~~a~~vL~~  202 (203)
                      +.   .++++++|+.
T Consensus       145 ~~---~~~~~evL~~  156 (167)
T d1e2ya_         145 PI---GRNVEEVIRL  156 (167)
T ss_dssp             TB---CCCHHHHHHH
T ss_pred             CC---CCCHHHHHHH
Confidence            42   2477787765

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.98  E-value=4e-33  Score=228.84  Aligned_cols=149  Identities=15%  Similarity=0.276  Sum_probs=127.0

Q ss_pred             ccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEE
Q 028808           35 VAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSV  114 (203)
Q Consensus        35 ~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~v  114 (203)
                      +++|++    ||||++++..+  +      .+++|+++++|||+||+|||++|||+|+.| +++|++.+++|+++|++ |
T Consensus         2 i~iGd~----aPdF~l~~~~~--~------g~i~l~d~~~gk~vVLfFyP~dfTpvCttE-l~~f~~~~~eF~~~~~~-v   67 (219)
T d1xcca_           2 YHLGAT----FPNFTAKASGI--D------GDFELYKYIENSWAILFSHPNDFTPVCTTE-LAELGKMHEDFLKLNCK-L   67 (219)
T ss_dssp             CCTTCB----CCCCEECBTTC--S------SCEEHHHHTTTSEEEEECCSCTTCHHHHHH-HHHHHHTHHHHHTTTEE-E
T ss_pred             CcCCCC----CCCcEeeccCC--C------CcEEeHHHcCCCeEEEEEEcCCCCcccchh-HHHHHHhhhhhcccceE-E
Confidence            689999    79999987643  1      369999977999999999999999999999 99999999999999998 9


Q ss_pred             EEEecCCHHHHHHHHHHh-------CCCCceEEEeeCCchHHHHcCCccccccccCC-CCcceEEEEEe-CCEEEEEEee
Q 028808          115 ICVAVNDPYVMNGWAEKL-------QAKDVIEFYGDFDGSFHKSLDLGKDLSAALLG-PRSERWSAYVE-DGRIKALNVE  185 (203)
Q Consensus       115 i~IS~d~~~~~~~~~~~~-------~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~-~~~~r~tfIId-dG~I~~~~~~  185 (203)
                      +|||+|+.++|++|+++.       +++  ||+++|++++++++||+..+....+.+ ..+.|++|||| +|+|+++++.
T Consensus        68 igiS~Ds~~sh~~w~~~~~~~~~~~~l~--fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~~~~~  145 (219)
T d1xcca_          68 IGFSCNSKESHDKWIEDIKYYGKLNKWE--IPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLY  145 (219)
T ss_dssp             EEEESSCHHHHHHHHHHHHHHHTCSCCC--CCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEE
T ss_pred             EeecCccHhHHhHHhhhhHhhcccCCCC--cccccccccHHHHHhCCcccccccCcccceeeeeeEEEcCcceEEEEEEe
Confidence            999999999999999886       575  999999999999999998754321111 13679999999 9999999988


Q ss_pred             cCCCCcccCCHHHHHhc
Q 028808          186 EAPSKMKVSGGDVILGQ  202 (203)
Q Consensus       186 ~~~~~~~~~~a~~vL~~  202 (203)
                      +...   ..+++++|+.
T Consensus       146 ~~~~---gr~~~EiLr~  159 (219)
T d1xcca_         146 PATT---GRNAHEILRV  159 (219)
T ss_dssp             CTTB---CCCHHHHHHH
T ss_pred             CCCc---ccCHHHHHHH
Confidence            6443   3688888765

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.98  E-value=4.5e-33  Score=214.98  Aligned_cols=147  Identities=18%  Similarity=0.346  Sum_probs=124.9

Q ss_pred             cccCCCccccCCCceEEeccccccCCCCCCceeeecccccCC-CeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCc
Q 028808           34 SVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKG-KKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID  112 (203)
Q Consensus        34 ~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~g-k~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~  112 (203)
                      ++++|++    ||+|++++.+|         ++++|+++ +| +++||+|||++|||+|+.| ++.|++++++++++|++
T Consensus         1 ml~vG~~----aPdF~l~d~~G---------~~~slsd~-~g~~~vvl~~~~~~~cp~C~~e-~~~l~~~~~~~~~~~~~   65 (153)
T d1xvwa1           1 MLNVGAT----APDFTLRDQNQ---------QLVTLRGY-RGAKNVLLVFFPLAFTGICQGE-LDQLRDHLPEFENDDSA   65 (153)
T ss_dssp             CCCTTSB----CCCCEEECTTS---------CEEEGGGG-TTTCEEEEEECSCTTSSHHHHH-HHHHHHTGGGTSSSSEE
T ss_pred             CCCCcCC----CcCeEEECCCC---------CEEeHHHH-cCCCcEEEEecccccccchhhh-hhhhhhhhhhhcccccc
Confidence            4789999    79999999876         89999995 77 5788899999999999999 99999999999999998


Q ss_pred             EEEEEecCCHHHHHHHHHHhCCCCceEEEeeC--CchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCC
Q 028808          113 SVICVAVNDPYVMNGWAEKLQAKDVIEFYGDF--DGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPS  189 (203)
Q Consensus       113 ~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~--~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~  189 (203)
                       |++||.|+++.+++|+++++++  ||+++|.  +++++++||+..+..  |   .+.|++|||| +|+|+|.++.+...
T Consensus        66 -vi~vs~d~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~ygv~~~~~--g---~~~r~tfvID~~G~I~~~~~~~~~~  137 (153)
T d1xvwa1          66 -ALAISVGPPPTHKIWATQSGFT--FPLLSDFWPHGAVSQAYGVFNEQA--G---IANRGTFVVDRSGIIRFAEMKQPGE  137 (153)
T ss_dssp             -EEEEESCCHHHHHHHHHHHTCC--SCEEECTTTTTHHHHHTTCEETTT--T---EECSEEEEECTTSBEEEEEECCTTC
T ss_pred             -cccccchhhhHHHHHhhhhccc--eeEEecccccchhHHHhhhhhhcc--C---ceeeeEEEECCCCEEEEEEEeCCCc
Confidence             9999999999999999999997  9999886  788999999975432  2   2568999999 99999999865432


Q ss_pred             CcccCCHHHHHhcC
Q 028808          190 KMKVSGGDVILGQI  203 (203)
Q Consensus       190 ~~~~~~a~~vL~~l  203 (203)
                      .-+..+.+++|++|
T Consensus       138 ~~~~~~~~~~L~aL  151 (153)
T d1xvwa1         138 VRDQRLWTDALAAL  151 (153)
T ss_dssp             CCCHHHHHHHHHHT
T ss_pred             ccCHHHHHHHHHhh
Confidence            22345666676654

>d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: N-terminal, Prx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=99.98  E-value=2.2e-32  Score=214.56  Aligned_cols=156  Identities=30%  Similarity=0.582  Sum_probs=132.5

Q ss_pred             CCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEE
Q 028808           37 VGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVIC  116 (203)
Q Consensus        37 ~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~  116 (203)
                      .|++    +|+|+++...|      +++++++|+|+++||+|||+|||++|||+|+.||++.+.+.++.++.+++..+++
T Consensus         3 ~Gd~----~Pdftl~~~~~------~~~~~~slsd~~~gk~VVL~f~P~afTp~Ct~e~~~~~~~~~~~~~~~~~~~vv~   72 (163)
T d1nm3a2           3 EGKK----VPQVTFRTRQG------DKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILV   72 (163)
T ss_dssp             TTSB----CCCCEEEEEET------TEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCC----CCCeEEEEEcC------CCceEEEHHHHhCCCeEEEEEEeccccccchhhhhhhhhhcchhhhhhcccceee
Confidence            5899    59999998764      1237899999889999999999999999999996444555666677777776899


Q ss_pred             EecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEeCCEEEEEEeecCCC--CcccC
Q 028808          117 VAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEEAPS--KMKVS  194 (203)
Q Consensus       117 IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~~~~--~~~~~  194 (203)
                      ++.++++.+++|.++.+.. +|++++|++++++++||+.......|++.++.|++||||||+|+++++++++.  .++.+
T Consensus        73 ~~s~d~~~~~a~~~~~~~~-~~~llsD~~~~~~~~~g~~~~~~~~g~g~~s~R~~~IiddG~I~~~~v~~~~~g~~~~~s  151 (163)
T d1nm3a2          73 VSVNDTFVMNAWKEDEKSE-NISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLVKNGVVEKMFIEPNEPGDPFKVS  151 (163)
T ss_dssp             EESSCHHHHHHHHHHTTCT-TSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEEETTEEEEEEECCSCSSCCCSSS
T ss_pred             eecCCHHHHHHHhhhhccC-ceeeeccCChHHHHHhhhhccccccccccccceEEEEEeCCEEEEEEEecCCCCCCcccc
Confidence            9999999999998888765 69999999999999999987666667777899999999999999999987643  36888


Q ss_pred             CHHHHHhcC
Q 028808          195 GGDVILGQI  203 (203)
Q Consensus       195 ~a~~vL~~l  203 (203)
                      +|++||++|
T Consensus       152 ~ae~vL~~L  160 (163)
T d1nm3a2         152 DADTMLKYL  160 (163)
T ss_dssp             SHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            999999986

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=8.8e-33  Score=227.04  Aligned_cols=147  Identities=15%  Similarity=0.227  Sum_probs=124.9

Q ss_pred             ccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEE
Q 028808           35 VAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSV  114 (203)
Q Consensus        35 ~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~v  114 (203)
                      |.+|++    ||+|++++.+|         + ++|+|+..+|++||+|||++|||+|+.| ++.|++.+++|+++|++ |
T Consensus         1 L~VGd~----APdF~l~~~~G---------~-v~Lsd~~g~k~vVLfFyP~dftpvC~~E-l~~~~~~~~~f~~~g~~-v   64 (220)
T d1prxa_           1 LLLGDV----APNFEANTTVG---------R-IRFHDFLGDSWGILFSHPRDFTPVCTTE-LGRAAKLAPEFAKRNVK-L   64 (220)
T ss_dssp             CCTTCB----CCCCEEEETTE---------E-EEHHHHHTTSEEEEEEESCSSCHHHHHH-HHHHHHHHHHHHTTTEE-E
T ss_pred             CCCCCC----CCCcEeecCCC---------C-EEeHHHcCCCeEEEEEECCCCCCcchhh-HHHHHHHHHHhhcccce-e
Confidence            578999    79999999875         4 9999964558999999999999999999 99999999999999998 9


Q ss_pred             EEEecCCHHHHHHHHHHh----------CCCCceEEEeeCCchHHHHcCCccccccccCC-CCcceEEEEEe-CCEEEEE
Q 028808          115 ICVAVNDPYVMNGWAEKL----------QAKDVIEFYGDFDGSFHKSLDLGKDLSAALLG-PRSERWSAYVE-DGRIKAL  182 (203)
Q Consensus       115 i~IS~d~~~~~~~~~~~~----------~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~-~~~~r~tfIId-dG~I~~~  182 (203)
                      +|||+|+.++|.+|.+..          +++  ||+++|++++++++||+..+....+.+ ..+.|++|||| +|+|+++
T Consensus        65 ~giS~Ds~~sh~~~~~~~~~~~~~~~~~~l~--fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~  142 (220)
T d1prxa_          65 IALSIDSVEDHLAWSKDINAYNSEEPTEKLP--FPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLS  142 (220)
T ss_dssp             EEEESSCHHHHHHHHHHHHHHTTSCCCSCCS--SCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEE
T ss_pred             eccccccccchhhhhhhhhhccccccccCcc--cccccCcccHHHHHhCCccccccccccceeeeEEEEEEcCccceeEE
Confidence            999999999999998874          354  999999999999999998754322211 23679999999 9999999


Q ss_pred             EeecCCCCcccCCHHHHHhc
Q 028808          183 NVEEAPSKMKVSGGDVILGQ  202 (203)
Q Consensus       183 ~~~~~~~~~~~~~a~~vL~~  202 (203)
                      ++++...+   .+++++|+.
T Consensus       143 ~~~~~~~g---R~~dEiLr~  159 (220)
T d1prxa_         143 ILYPATTG---RNFDEILRV  159 (220)
T ss_dssp             EECCTTBC---CCHHHHHHH
T ss_pred             EEecCCcc---cchHHHHHH
Confidence            99986543   477777764

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=99.97  E-value=4.4e-32  Score=214.39  Aligned_cols=140  Identities=19%  Similarity=0.315  Sum_probs=119.6

Q ss_pred             CCceEEeccccccCCCCCCceeeecccccCC-CeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHH
Q 028808           45 AQDVSLQKARTWDEGVSSNFATTPIKDIFKG-KKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPY  123 (203)
Q Consensus        45 APdf~l~~~~g~~~G~~~~~~~vsL~dl~~g-k~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~  123 (203)
                      ||||+|++..|     ++++++++|+|+ +| |++||+|||++|||+|+.| +++|++.+++|+++|++ |||||.|+++
T Consensus         2 APdF~l~~~~g-----d~~~~~vsL~d~-~g~k~vVl~FyP~~~tp~Ct~e-~~~f~~~~~~f~~~g~~-vigIS~D~~~   73 (170)
T d2h01a1           2 APSFKAEAVFG-----DNTFGEVSLSDF-IGKKYVLLYFYPLDFTFVCPSE-IIALDKALDSFKERNVE-LLGCSVDSKF   73 (170)
T ss_dssp             CCCCEEEEECT-----TSCEEEEEGGGG-TTTCEEEEEECSCSSCSSCCHH-HHHHHHTHHHHHHTTEE-EEEEESSCHH
T ss_pred             CCCeEeeeecC-----CCCccEEehHHH-CCCCeEEEEEECCCCCCccchh-hHHHhhhhhhhhcCCee-EecccCCcHH
Confidence            89999997764     223378999995 66 6899999999999999999 99999999999999999 9999999999


Q ss_pred             HHHHHHHHhC-------CCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCCcccCC
Q 028808          124 VMNGWAEKLQ-------AKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSKMKVSG  195 (203)
Q Consensus       124 ~~~~~~~~~~-------l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~~~~~~  195 (203)
                      .+++|+++.+       +  +||+++|++++++++||+..+.      ..+.|++|||| +|+|+++++++.+.   ..+
T Consensus        74 ~~~~~~~~~~~~~~~~~~--~f~llsD~~~~~~~~ygv~~~~------~~~~R~tfiId~~G~I~~~~~~~~~~---~~~  142 (170)
T d2h01a1          74 THLAWKKTPLSQGGIGNI--KHTLISDISKSIARSYDVLFNE------SVALRAFVLIDKQGVVQHLLVNNLAL---GRS  142 (170)
T ss_dssp             HHHHHHTSCGGGTCCCSC--SSEEEECTTSHHHHHTTCEETT------TEECCEEEEECTTSBEEEEEEGGGSS---GGG
T ss_pred             HHHhHhhhhhhhcccccc--CCceeEcCccHHHHHhCCcccc------ccceeeeEEEcCCCeEEEEEEecCCC---CCC
Confidence            9999998743       5  4999999999999999996532      13679999999 99999999876543   357


Q ss_pred             HHHHHhcC
Q 028808          196 GDVILGQI  203 (203)
Q Consensus       196 a~~vL~~l  203 (203)
                      ++++|+.|
T Consensus       143 ~~eil~~l  150 (170)
T d2h01a1         143 VDEILRLI  150 (170)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88888753

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=99.97  E-value=1.6e-31  Score=209.65  Aligned_cols=147  Identities=17%  Similarity=0.276  Sum_probs=125.4

Q ss_pred             cccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcE
Q 028808           34 SVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDS  113 (203)
Q Consensus        34 ~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~  113 (203)
                      .+++|++    ||+|+|++.+|         +.++|++ ++||++||+|||+.|||+|..| +++|++.+++|+  |+. 
T Consensus        15 ~p~vG~~----APdF~L~d~~g---------~~v~Lsd-~~Gk~vVL~f~p~~~tp~C~~e-~~~~~~~~~~~~--~~~-   76 (164)
T d1q98a_          15 FPQVGEI----VENFILVGNDL---------ADVALND-FASKRKVLNIFPSIDTGVCATS-VRKFNQQAAKLS--NTI-   76 (164)
T ss_dssp             CCCTTCB----CCCCEEECTTS---------CEEEGGG-GTTSEEEEEECSCSCSSCCCHH-HHHHHHHHHHST--TEE-
T ss_pred             CCCCCCC----CCCcEEECCCC---------CEEeehh-hCCcEEEEEecCccccCcccHH-HHHHHHHHHHhc--cce-
Confidence            5799999    79999999875         8999999 5999999999999999999999 999999999995  687 


Q ss_pred             EEEEecCCHHHHHHHHHHhCCCCceEEEeeC-CchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCCc
Q 028808          114 VICVAVNDPYVMNGWAEKLQAKDVIEFYGDF-DGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSKM  191 (203)
Q Consensus       114 vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~-~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~~  191 (203)
                      |++||.|+++.+++|+++++++ ++++++|. +..+++.||+.....  ++...+.|++|||| +|+|+|+++.++++  
T Consensus        77 vi~iS~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~--~~~g~~~Ra~fvID~~G~I~y~~~~~~~~--  151 (164)
T d1q98a_          77 VLCISADLPFAQARFCGAEGIE-NAKTVSTFRNHALHSQLGVDIQTG--PLAGLTSRAVIVLDEQNNVLHSQLVEEIK--  151 (164)
T ss_dssp             EEEEESSCHHHHTTCTTTTTCT-TEEEEECTTCTHHHHHTTCEECSS--TTTTSBCCEEEEECTTSBEEEEEECSBTT--
T ss_pred             EEeecCCcHHHHHHHHHHhCCc-cccccccccchhHHHhhceecccC--ccccCcccEEEEECCCCEEEEEEECCCCC--
Confidence            9999999999999999999997 57777764 788999999976432  11113569999999 99999999988765  


Q ss_pred             ccCCHHHHHhcC
Q 028808          192 KVSGGDVILGQI  203 (203)
Q Consensus       192 ~~~~a~~vL~~l  203 (203)
                      ...+.+++|+.|
T Consensus       152 ~epd~~~~l~~L  163 (164)
T d1q98a_         152 EEPNYEAALAVL  163 (164)
T ss_dssp             SCCCHHHHHHTT
T ss_pred             CCCCHHHHHHhh
Confidence            345778888876

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.8e-32  Score=211.57  Aligned_cols=148  Identities=20%  Similarity=0.227  Sum_probs=120.5

Q ss_pred             cccccCCCccccCCCceEEeccccccCCCCCCceeeeccccc-CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcC
Q 028808           32 YASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIF-KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKG  110 (203)
Q Consensus        32 ~~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~-~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~g  110 (203)
                      +..+++|++    ||+|+|++.+|         +.++|+++. +|+.+|++|||++|||+|+.| ++.|++.+++|++ +
T Consensus         2 ~~~L~vG~~----aP~f~L~~~~g---------~~~~l~~~~~k~~~vvlff~p~~~cp~C~~~-~~~~~~~~~~~~~-~   66 (156)
T d2a4va1           2 VNELEIGDP----IPDLSLLNEDN---------DSISLKKITENNRVVVFFVYPRASTPGSTRQ-ASGFRDNYQELKE-Y   66 (156)
T ss_dssp             TTCCCTTCB----CCSCEEECTTS---------CEEEHHHHHHHCSEEEEEECSSSSSHHHHHH-HHHHHHHHHHHTT-T
T ss_pred             CccCCCCCC----CCCeEEECCCC---------CEEeeHHHcCCccEEEEEecccccCcchhhh-hHHHHHHHHHHhh-c
Confidence            457899999    79999999886         899999953 456666677789999999999 9999999999975 5


Q ss_pred             CcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEeCCEEEEEEeecCCCC
Q 028808          111 IDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEEAPSK  190 (203)
Q Consensus       111 v~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~~~~~  190 (203)
                      +. +++||.|+++.+++|+++++++  ||+|+|++++++++||+..... .    ...|++||+.||+|++++++..+..
T Consensus        67 ~~-~~~is~d~~~~~~~f~~~~~l~--f~~L~D~~~~v~~~ygv~~~~~-~----~~~r~~~i~~dg~i~~~~~~~~~~~  138 (156)
T d2a4va1          67 AA-VFGLSADSVTSQKKFQSKQNLP--YHLLSDPKREFIGLLGAKKTPL-S----GSIRSHFIFVDGKLKFKRVKISPEV  138 (156)
T ss_dssp             CE-EEEEESCCHHHHHHHHHHHTCS--SEEEECTTCHHHHHHTCBSSSS-S----CBCCEEEEEETTEEEEEEESCCHHH
T ss_pred             cc-eeeeccchhhhHHhhhcccCcc--ceeccchHHHHHHHcCCCcccc-C----CeeEEEEEEECCeEEEEEEEeCCCC
Confidence            66 9999999999999999999997  9999999999999999976421 1    1357666666999999998765432


Q ss_pred             cccCCHHHHHhc
Q 028808          191 MKVSGGDVILGQ  202 (203)
Q Consensus       191 ~~~~~a~~vL~~  202 (203)
                      --..+++++|+.
T Consensus       139 ~~~~~~~evl~~  150 (156)
T d2a4va1         139 SVNDAKKEVLEV  150 (156)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             CcchHHHHHHHH
Confidence            123356677764

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.97  E-value=9.3e-32  Score=223.01  Aligned_cols=143  Identities=21%  Similarity=0.353  Sum_probs=120.3

Q ss_pred             cCCCccccCCCceEEeccccccCCCCCCceeeeccccc--CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcE
Q 028808           36 AVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIF--KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDS  113 (203)
Q Consensus        36 ~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~--~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~  113 (203)
                      .+|++    ||+|++++.+|          ++++++++  +||++||+|||++|||+|+.| +++|++++++|+++|++ 
T Consensus         2 lIGd~----aPdF~l~t~~G----------~i~~~d~~~~kGk~vVLff~P~dftpvCttE-l~~~~~~~~ef~~~g~~-   65 (237)
T d2zcta1           2 LIGER----FPEMEVTTDHG----------VIKLPDHYVSQGKWFVLFSHPADFTPVCTTE-FVSFARRYEDFQRLGVD-   65 (237)
T ss_dssp             CTTSB----CCCEEEEETTE----------EEEETHHHHTTTCEEEEEEESCSSCHHHHHH-HHHHHHTHHHHHHTTEE-
T ss_pred             CCCCC----CCCeEEEcCCC----------CEEechHhhcCCCEEEEEEECCCCCccCHHH-HHHHHhhhhhhccCCcc-
Confidence            48999    69999999874          47777642  799999999999999999999 99999999999999998 


Q ss_pred             EEEEecCCHHHHHHHHHHh------CCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808          114 VICVAVNDPYVMNGWAEKL------QAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       114 vi~IS~d~~~~~~~~~~~~------~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~  186 (203)
                      |||||+|+.+++++|++..      +++  ||+++|++++++++||+.....    +..+.|++|||| ||+|+++++++
T Consensus        66 vigiS~Ds~~sh~~w~~~~~~~~~~~l~--fpllsD~~~~vak~yGv~~~~~----~~~~~RatFIIDpdG~Ir~~~~~~  139 (237)
T d2zcta1          66 LIGLSVDSVFSHIKWKEWIERHIGVRIP--FPIIADPQGTVARRLGLLHAES----ATHTVRGVFIVDARGVIRTMLYYP  139 (237)
T ss_dssp             EEEEESSCHHHHHHHHHHHHHHHCCCCC--SCEEECGGGHHHHHTTCC--------CCTTCCEEEEECTTSBEEEEEECC
T ss_pred             eeeccCCcHHHHHHHhhhhhhhcccccc--cccccCcchHHHHHcCCccccc----cccceeeeEEECCCCEEEEEEEeC
Confidence            9999999999999998753      464  9999999999999999975321    123679999999 99999999987


Q ss_pred             CCCCcccCCHHHHHhcC
Q 028808          187 APSKMKVSGGDVILGQI  203 (203)
Q Consensus       187 ~~~~~~~~~a~~vL~~l  203 (203)
                      ...   ..+++++|+.|
T Consensus       140 ~~~---gR~~dEiLr~l  153 (237)
T d2zcta1         140 MEL---GRLVDEILRIV  153 (237)
T ss_dssp             TTB---CCCHHHHHHHH
T ss_pred             CCC---CCCHHHHHHHH
Confidence            543   24888888754

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=2.4e-31  Score=208.62  Aligned_cols=144  Identities=15%  Similarity=0.227  Sum_probs=121.9

Q ss_pred             cccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcE
Q 028808           34 SVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDS  113 (203)
Q Consensus        34 ~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~  113 (203)
                      .+++|++    ||+|+|++.+|         ++++|++ ++||++||+|||+.|||+|..| ++.|++++.+++  |++ 
T Consensus        17 ~~~vG~~----APdF~L~~~~g---------~~vsLsd-~~GK~vvl~f~~~~~~p~C~~~-~~~l~~~~~~~~--~~~-   78 (164)
T d1qxha_          17 IPQAGSK----AQTFTLVAKDL---------SDVTLGQ-FAGKRKVLNIFPSIDTGVCAAS-VRKFNQLATEID--NTV-   78 (164)
T ss_dssp             CCCTTSB----CCCCEEECTTS---------CEEEGGG-GTTSEEEEEECSCSCSSCCCHH-HHHHHHHHHTST--TEE-
T ss_pred             cCCCCCC----CCCeEEECCCC---------CEEeHHH-hCCCeEEEEEecchhcccchHH-HHHHHHHHHhhc--cce-
Confidence            4799999    79999999876         8999999 5999999999999999999999 999999988764  677 


Q ss_pred             EEEEecCCHHHHHHHHHHhCCCCceEEE--eeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCC
Q 028808          114 VICVAVNDPYVMNGWAEKLQAKDVIEFY--GDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSK  190 (203)
Q Consensus       114 vi~IS~d~~~~~~~~~~~~~l~~~fpll--sD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~  190 (203)
                      +++||.|+++.+++|.++++++  |+++  +|++++++++||+.....  ++...+.|++|||| +|+|+|+++.++++ 
T Consensus        79 vv~Is~d~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~ygv~~~~~--~~~g~~~ra~fvID~~G~I~y~~~~~~~~-  153 (164)
T d1qxha_          79 VLCISADLPFAQSRFCGAEGLN--NVITLSTFRNAEFLQAYGVAIADG--PLKGLAARAVVVIDENDNVIFSQLVDEIT-  153 (164)
T ss_dssp             EEEEESSCHHHHTTCCSSTTCT--TEEEEECTTCHHHHHHTTCBBCSS--TTTTSBCCEEEEECTTSBEEEEEECSBTT-
T ss_pred             eeeEEcCCHHHHHHHHHHhCCC--cceeeccccchhhHHhcCeEeecC--cccCcccCEEEEEcCCCEEEEEEEcCCCC-
Confidence            9999999999999999999997  6665  466899999999976431  11123569999999 99999999998764 


Q ss_pred             cccCCHHHHHh
Q 028808          191 MKVSGGDVILG  201 (203)
Q Consensus       191 ~~~~~a~~vL~  201 (203)
                       +.++-+++|+
T Consensus       154 -~~pd~d~~l~  163 (164)
T d1qxha_         154 -TEPDYEAALA  163 (164)
T ss_dssp             -SCCCHHHHTC
T ss_pred             -CCCCHHHhhc
Confidence             3667888875

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.96  E-value=3.8e-30  Score=201.35  Aligned_cols=144  Identities=22%  Similarity=0.334  Sum_probs=120.3

Q ss_pred             ccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCc
Q 028808           33 ASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID  112 (203)
Q Consensus        33 ~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~  112 (203)
                      ..+++|++    ||+|+|++.+|         ++++|++ ++||++||+|||+.|||+|..| ++.|++.+.+|+  |+.
T Consensus        14 ~~l~vG~~----aPdF~L~~~~g---------~~vsLsd-~~gk~~vl~f~~~~~~p~C~~~-~~~l~~~~~~~~--~~~   76 (163)
T d1psqa_          14 KQLQVGDK----ALDFSLTTTDL---------SKKSLAD-FDGKKKVLSVVPSIDTGICSTQ-TRRFNEELAGLD--NTV   76 (163)
T ss_dssp             CCCCTTSB----CCCCEEECTTS---------CEEEGGG-GTTSEEEEEECSCTTSHHHHHH-HHHHHHHTTTCT--TEE
T ss_pred             CCCCCCCC----CCCeEEECCCC---------CEEehHH-hCCcEEEEEeccccccccchhh-HHHHHHHHHhhc--ccc
Confidence            37899999    79999999876         8999999 5999999999999999999999 999999888884  677


Q ss_pred             EEEEEecCCHHHHHHHHHHhCCCCceEEEee-CCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCC
Q 028808          113 SVICVAVNDPYVMNGWAEKLQAKDVIEFYGD-FDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSK  190 (203)
Q Consensus       113 ~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD-~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~  190 (203)
                       +++||.|+++.+++|.++++.. ++++++| .+.+++++||+.....  +   ...|++|||| +|+|+|+++.++++.
T Consensus        77 -vv~Is~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ygv~~~~~--~---~~~Ra~fvID~~G~I~y~~~~~~~~~  149 (163)
T d1psqa_          77 -VLTVSMDLPFAQKRWCGAEGLD-NAIMLSDYFDHSFGRDYALLINEW--H---LLARAVFVLDTDNTIRYVEYVDNINS  149 (163)
T ss_dssp             -EEEEESSCHHHHHHHHHHHTCT-TSEEEECTTTCHHHHHHTCBCTTT--C---SBCCEEEEECTTCBEEEEEECSBTTS
T ss_pred             -eEEEEeccHHHHHHHHHHcCCc-ceeeeccccchhHHHhheeecccc--c---ceeEEEEEECCCCEEEEEEEcCCCCC
Confidence             9999999999999999999986 4555555 5889999999976432  1   2568999999 999999999887642


Q ss_pred             cccCCHHHHHhc
Q 028808          191 MKVSGGDVILGQ  202 (203)
Q Consensus       191 ~~~~~a~~vL~~  202 (203)
                        ..+.+++|++
T Consensus       150 --~~~~~~il~a  159 (163)
T d1psqa_         150 --EPNFEAAIAA  159 (163)
T ss_dssp             --CCCHHHHHHH
T ss_pred             --CCCHHHHHHH
Confidence              4455555554

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.96  E-value=9.8e-30  Score=199.57  Aligned_cols=146  Identities=19%  Similarity=0.293  Sum_probs=115.7

Q ss_pred             cccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcE
Q 028808           34 SVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDS  113 (203)
Q Consensus        34 ~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~  113 (203)
                      .+++|++    ||+|+|++.+|         ++++|++ ++||++||+|||+.|||+|..| ++.|++   +++++|++ 
T Consensus        16 ~p~iG~~----aP~F~L~~~~g---------~~v~L~d-~~Gk~vvl~f~~~~~~p~C~~e-~~~l~~---~~~~~g~~-   76 (166)
T d1xvqa_          16 LPAVGSP----APAFTLTGGDL---------GVISSDQ-FRGKSVLLNIFPSVDTPVCATS-VRTFDE---RAAASGAT-   76 (166)
T ss_dssp             CCCTTSB----CCCCEEECTTS---------CEEEGGG-GTTSCEEEEECSCCCSSCCCHH-HHHHHH---HHHHTTCE-
T ss_pred             CCCCcCC----CCCeEEECCCC---------CEEehHH-hCCcEEEEEeeecccccccHHH-HHHHhh---hccccccc-
Confidence            5799999    79999999876         8999999 5999999999999999999999 998864   56778998 


Q ss_pred             EEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCCcc
Q 028808          114 VICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSKMK  192 (203)
Q Consensus       114 vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~~~  192 (203)
                      |++||.|+++.+++|.+++++. ...+..|....+++.||+......  +.....|++|||| +|+|+|.++.+++.  .
T Consensus        77 vv~Is~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~--~~g~~~ra~fvID~~G~I~y~~~~~~~~--~  151 (166)
T d1xvqa_          77 VLCVSKDLPFAQKRFCGAEGTE-NVMPASAFRDSFGEDYGVTIADGP--MAGLLARAIVVIGADGNVAYTELVPEIA--Q  151 (166)
T ss_dssp             EEEEESSCHHHHTTCC-------CEEEEECTTSSHHHHTTCBBCSST--TTTSBCSEEEEECTTSBEEEEEECSBTT--C
T ss_pred             ccccccchHHHHHHHHHHhCCc-ccccccchhHHHHHHhCeeeccCc--ccCceeeEEEEEeCCCEEEEEEEcCCCC--C
Confidence            9999999999999999999987 344456778999999999864321  1123568999999 99999999987654  3


Q ss_pred             cCCHHHHHhcC
Q 028808          193 VSGGDVILGQI  203 (203)
Q Consensus       193 ~~~a~~vL~~l  203 (203)
                      ..+.+++|++|
T Consensus       152 ~~~~d~il~aL  162 (166)
T d1xvqa_         152 EPNYEAALAAL  162 (166)
T ss_dssp             CCCHHHHHHHH
T ss_pred             CCCHHHHHHHH
Confidence            56788888764

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=6.1e-27  Score=187.15  Aligned_cols=124  Identities=10%  Similarity=0.121  Sum_probs=107.7

Q ss_pred             cccccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCC
Q 028808           32 YASVAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGI  111 (203)
Q Consensus        32 ~~~~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv  111 (203)
                      ...+++|++    ||+|+|+|.+|         +.++|++ ++|| +||++||++|||+|..+ +|.|++++++|++ ++
T Consensus         3 ~p~l~vG~~----aPdF~l~d~~G---------~~~~Lsd-~kGk-~vvl~FwatwCp~C~~~-~p~l~~l~~~y~~-~v   65 (187)
T d2cvba1           3 YPELPLESP----LIDAELPDPRG---------GRYRLSQ-FHEP-LLAVVFMCNHCPYVKGS-IGELVALAERYRG-KV   65 (187)
T ss_dssp             SCCCCTTCB----CCCCEEECTTS---------CEEEGGG-CCSS-EEEEEEECSSCHHHHTT-HHHHHHHHHHTTT-TE
T ss_pred             CCCCCCCCc----cCccEeecCCC---------CEEEHHH-hCCC-eEEEEEeCCCCccchhh-hhhhhhhhhhccc-cc
Confidence            457889999    69999999986         8999999 5998 67788999999999999 9999999999986 47


Q ss_pred             cEEEEEecC--------CHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEE
Q 028808          112 DSVICVAVN--------DPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKAL  182 (203)
Q Consensus       112 ~~vi~IS~d--------~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~  182 (203)
                      . +++|+.+        +++.+++|.++++++  ||++.|.+++++++||+..           .|.+|||| +|+|+|+
T Consensus        66 ~-~v~i~snd~~~~~~~~~e~~~~~~~~~~~~--~p~l~D~~~~~~~~~~v~~-----------~P~~~liD~~G~i~y~  131 (187)
T d2cvba1          66 A-FVGINANDYEKYPEDAPEKMAAFAEEHGIF--FPYLLDETQEVAKAYRALR-----------TPEVFLFDERRLLRYH  131 (187)
T ss_dssp             E-EEEEECCCTTTCGGGSHHHHHHHHHHHTCC--SCEEECSSSHHHHHTTCCE-----------ESEEEEECTTCBEEEE
T ss_pred             e-eeeeeccccccccccchHHHHHHHHHhCCc--ceeeechhhhhcccccccc-----------eeeEEEEcCCCeEEEE
Confidence            7 8888753        346789999999996  9999999999999999964           47799999 9999997


Q ss_pred             Eeec
Q 028808          183 NVEE  186 (203)
Q Consensus       183 ~~~~  186 (203)
                      -.-+
T Consensus       132 G~id  135 (187)
T d2cvba1         132 GRVN  135 (187)
T ss_dssp             ECSS
T ss_pred             eeec
Confidence            5433

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.94  E-value=1.3e-26  Score=175.01  Aligned_cols=131  Identities=18%  Similarity=0.334  Sum_probs=113.9

Q ss_pred             CCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEE
Q 028808           38 GSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICV  117 (203)
Q Consensus        38 G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~I  117 (203)
                      |++    ||+|++++.+|         ++++|+++ +||+ +|+.||++|||+|..+ ++.+++++++|.++|+. +++|
T Consensus         2 G~~----~P~f~l~~~~G---------~~~~l~~~-~gk~-~li~f~~~~C~~C~~~-~~~l~~~~~~~~~~~~~-~v~i   64 (137)
T d1st9a_           2 GSD----APNFVLEDTNG---------KRIELSDL-KGKG-VFLNFWGTWCEPCKKE-FPYMANQYKHFKSQGVE-IVAV   64 (137)
T ss_dssp             CEE----CCCCEEECTTS---------CEEEGGGG-TTSE-EEEEEECTTCHHHHHH-HHHHHHHHHHHGGGTEE-EEEE
T ss_pred             cCc----CCCeEEECCCc---------CEEeHHHh-CCCE-EEEEEeeccccceeec-ccccccccccccccccc-cccc
Confidence            677    69999999986         89999994 9984 6778999999999999 99999999999999998 9999


Q ss_pred             ecC-CHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCCcccCC
Q 028808          118 AVN-DPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSKMKVSG  195 (203)
Q Consensus       118 S~d-~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~~~~~~  195 (203)
                      |.+ +...+++|+++++++  ||++.|.++++++.||+..           .|++|||| +|+|++++.+..    +...
T Consensus        65 ~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~v~~-----------~P~~~liD~~G~i~~~~~G~~----~~~~  127 (137)
T d1st9a_          65 NVGESKIAVHNFMKSYGVN--FPVVLDTDRQVLDAYDVSP-----------LPTTFLINPEGKVVKVVTGTM----TESM  127 (137)
T ss_dssp             EESCCHHHHHHHHHHTTCC--SCEEEETTSHHHHHTTCCS-----------SCEEEEECTTSEEEEEEESCC----CHHH
T ss_pred             cccchhhhHHHHHHHcCCC--ccccccccchhhhhhhccc-----------cceEEEECCCCEEEEEEECCC----CHHH
Confidence            986 567899999999997  9999999999999999853           47899999 999999998753    3455


Q ss_pred             HHHHHhc
Q 028808          196 GDVILGQ  202 (203)
Q Consensus       196 a~~vL~~  202 (203)
                      .+++|+.
T Consensus       128 ~~~~l~~  134 (137)
T d1st9a_         128 IHDYMNL  134 (137)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            6666654

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.93  E-value=1.5e-26  Score=174.68  Aligned_cols=129  Identities=13%  Similarity=0.158  Sum_probs=105.3

Q ss_pred             CCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC-CHH
Q 028808           45 AQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN-DPY  123 (203)
Q Consensus        45 APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d-~~~  123 (203)
                      +|+|++++.+|         ++++|+++ +|| +||++||++|||+|..| +|.|+++++++  .|+. +++|+.+ +..
T Consensus         4 ~~~f~~~~~~G---------~~~~l~~~-~Gk-~vll~F~a~wC~~C~~~-~p~l~~~~~~~--~~v~-~v~v~~~~~~~   68 (134)
T d1lu4a_           4 RLQFTATTLSG---------APFDGASL-QGK-PAVLWFWTPWCPFCNAE-APSLSQVAAAN--PAVT-FVGIATRADVG   68 (134)
T ss_dssp             GGCCEEEBTTS---------CEEEGGGG-TTS-CEEEEEECTTCHHHHHH-HHHHHHHHHHC--TTSE-EEEEECSSCHH
T ss_pred             CCcceeECCCC---------CEEcHHHh-CCC-EEEEEEeecccCCceec-chhHHHHhhhh--cccc-ccccccccchh
Confidence            69999999986         89999995 998 56677999999999999 99999998875  4787 9999986 567


Q ss_pred             HHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCCcccCCHHHHHhc
Q 028808          124 VMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSKMKVSGGDVILGQ  202 (203)
Q Consensus       124 ~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~~~~~~a~~vL~~  202 (203)
                      ..++|+++++++  ||++.|++++++++||+..           .|++|||| +|+|++++..  .+..+.++..+.|++
T Consensus        69 ~~~~~~~~~~~~--~p~~~d~~~~~~~~~~v~~-----------~P~~~lid~~G~i~~v~~~--~g~~~~~~l~~~l~~  133 (134)
T d1lu4a_          69 AMQSFVSKYNLN--FTNLNDADGVIWARYNVPW-----------QPAFVFYRADGTSTFVNNP--TAAMSQDELSGRVAA  133 (134)
T ss_dssp             HHHHHHHHHTCC--SEEEECTTSHHHHHTTCCS-----------SSEEEEECTTSCEEEECCS--SSCCCHHHHHHHHHH
T ss_pred             hhhhhhhhhccc--cceeeCchHHHHHHcCCCc-----------CCEEEEEeCCCeEEEEecc--CCCCCHHHHHHHHHc
Confidence            889999999997  9999999999999999853           47899999 9999987533  233333444444444


Q ss_pred             C
Q 028808          203 I  203 (203)
Q Consensus       203 l  203 (203)
                      |
T Consensus       134 L  134 (134)
T d1lu4a_         134 L  134 (134)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.92  E-value=3.1e-25  Score=174.35  Aligned_cols=127  Identities=15%  Similarity=0.271  Sum_probs=108.4

Q ss_pred             ccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEE
Q 028808           35 VAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSV  114 (203)
Q Consensus        35 ~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~v  114 (203)
                      ...+.+    +|+|+|++.+|         +.++|++ ++|| +||++||++|||.|..+ ++.++++++++++.++. |
T Consensus        30 ~~~~~~----~Pdf~l~d~~G---------~~v~L~~-~kGK-~vll~F~a~wC~~C~~~-~~~l~~~~~~~~~~~~~-v   92 (176)
T d1jfua_          30 ASAPLK----LPDLAFEDADG---------KPKKLSD-FRGK-TLLVNLWATWCVPCRKE-MPALDELQGKLSGPNFE-V   92 (176)
T ss_dssp             CCSCCB----CCCCEEECTTS---------CEEEGGG-GTTS-EEEEEEECTTCHHHHHH-HHHHHHHHHHHCBTTEE-E
T ss_pred             cCCCCc----CCCeEEECCCc---------CEEeHHH-hCCC-EEEEEeccCcccchHHH-HHhhhhccccccccccc-c
Confidence            344555    69999999986         8999999 5998 56778999999999999 99999999999999998 9


Q ss_pred             EEEecC--CHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808          115 ICVAVN--DPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       115 i~IS~d--~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~  186 (203)
                      ++||.|  +++..++|.++++++ .++++.|.+..+.+.|+.....       ...|++|||| +|+|++++.+.
T Consensus        93 v~vs~d~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~v-------~~~P~~~lID~~G~I~~~~~G~  159 (176)
T d1jfua_          93 VAINIDTRDPEKPKTFLKEANLT-RLGYFNDQKAKVFQDLKAIGRA-------LGMPTSVLVDPQGCEIATIAGP  159 (176)
T ss_dssp             EEEECCCSCTTHHHHHHHHTTCC-TTCCEECTTCHHHHHHHTTTCC-------SSSSEEEEECTTSBEEEEEESC
T ss_pred             ccccccccchhhhhhhHhhhCCc-ceeeeecchhHHHHHHhhhccC-------CCCCeEEEEcCCCEEEEEEECC
Confidence            999976  567899999999997 5679999999999998775421       2358899999 99999999875

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=99.91  E-value=3.8e-25  Score=168.38  Aligned_cols=136  Identities=13%  Similarity=0.177  Sum_probs=110.3

Q ss_pred             ccCCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEE
Q 028808           35 VAVGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSV  114 (203)
Q Consensus        35 ~~~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~v  114 (203)
                      +++|++    ||+|++.+..  .+|     +.+++++ ++|| ++|++||++|||+|..+ +|.++++++++++ +++ +
T Consensus         1 ~k~g~~----aP~~~~~~~~--~ng-----~~~~~~~-~~~k-~vvl~f~a~~C~~C~~~-~p~l~~l~~~~~~-~~~-~   64 (143)
T d2b5xa1           1 MKLRQP----MPELTGEKAW--LNG-----EVTREQL-IGEK-PTLIHFWSISCHLCKEA-MPQVNEFRDKYQD-QLN-V   64 (143)
T ss_dssp             CCTTCB----CCCCCCCSEE--ESC-----CCCHHHH-TTTS-CEEEEEECTTCHHHHHH-HHHHHHHHHHHTT-TSE-E
T ss_pred             CCCCCc----CCCCcCCccC--cCC-----eEecHHH-hCCC-EEEEEEEcCCCcchhhh-hhhhhhhhhhhhc-ccc-c
Confidence            478998    6999976631  112     6677777 5877 66778999999999999 9999999999986 577 9


Q ss_pred             EEEecC------CHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecC
Q 028808          115 ICVAVN------DPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEA  187 (203)
Q Consensus       115 i~IS~d------~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~  187 (203)
                      |+|+.+      +....++|.++++++  ||++.|.++++++.||+..           .|++|||| +|+|++.+.+..
T Consensus        65 i~v~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~D~~~~~~~~~~v~~-----------~P~~~~id~~G~i~~~~~G~~  131 (143)
T d2b5xa1          65 VAVHMPRSEDDLDPGKIKETAAEHDIT--QPIFVDSDHALTDAFENEY-----------VPAYYVFDKTGQLRHFQAGGS  131 (143)
T ss_dssp             EEEECCCSTTTSSHHHHHHHHHHTTCC--SCEEECSSCHHHHHTCCCC-----------SSEEEEECTTCBEEEEEESCS
T ss_pred             eeEEeeccccccchhhhhhHHHhhccC--ccccccCccchHHHcCCCc-----------CCEEEEECCCCEEEEEEECCC
Confidence            999875      245678999999997  9999999999999999853           47899999 999999998743


Q ss_pred             CCCcccCCHHHHHhcC
Q 028808          188 PSKMKVSGGDVILGQI  203 (203)
Q Consensus       188 ~~~~~~~~a~~vL~~l  203 (203)
                          +.+..++.|++|
T Consensus       132 ----~~~~l~~~l~~l  143 (143)
T d2b5xa1         132 ----GMKMLEKRVNRV  143 (143)
T ss_dssp             ----TTHHHHHHHHHH
T ss_pred             ----CHHHHHHHHHhC
Confidence                345667777654

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.91  E-value=9.1e-25  Score=164.06  Aligned_cols=126  Identities=14%  Similarity=0.193  Sum_probs=103.1

Q ss_pred             CceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC-CHHH
Q 028808           46 QDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN-DPYV  124 (203)
Q Consensus        46 Pdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d-~~~~  124 (203)
                      +||++++.+|         ++++++++ +|| ++|+.||++|||+|..| +|.++++++++++  +. +++|+.+ +...
T Consensus         6 ~df~~~~~~G---------~~~~l~~~-~Gk-~vll~fwa~wC~~C~~~-~p~l~~l~~~~~~--~~-~v~v~~~d~~~~   70 (134)
T d1zzoa1           6 LQFSAKTLDG---------HDFHGESL-LGK-PAVLWFWAPWCPTCQGE-APVVGQVAASHPE--VT-FVGVAGLDQVPA   70 (134)
T ss_dssp             GCCEEEBTTS---------CEEEGGGG-TTS-CEEEEEECTTCHHHHHH-HHHHHHHHHHCTT--SE-EEEEECSSCHHH
T ss_pred             cceeEEcCCC---------CEEeHHHh-CCC-EEEEEecccccCccccc-chhhHHHHhhhcc--cc-cccccccccchh
Confidence            6899999986         89999995 998 57778999999999999 9999999998864  55 7777764 5678


Q ss_pred             HHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCCcccCCHHHHHhcC
Q 028808          125 MNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSKMKVSGGDVILGQI  203 (203)
Q Consensus       125 ~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~~~~~~a~~vL~~l  203 (203)
                      .++|.++++.. .||++.|.++++++.||+..           .|++|||| +|+|++.. +    ..+.++.++.|++|
T Consensus        71 ~~~~~~~~~~~-~~~~l~D~~~~~~~~~~v~~-----------~P~~~iiD~~G~i~~~~-g----~~~~~~l~~~i~~L  133 (134)
T d1zzoa1          71 MQEFVNKYPVK-TFTQLADTDGSVWANFGVTQ-----------QPAYAFVDPHGNVDVVR-G----RMSQDELTRRVTAL  133 (134)
T ss_dssp             HHHHHHHTTCT-TSEEEECTTCHHHHHTTCCS-----------SSEEEEECTTCCEEEEE-S----CCCHHHHHHHHHHH
T ss_pred             HHHHHHhcCCc-ceeEEeeccchHHHhcCCCc-----------cCeEEEECCCCeEEEEE-C----CCCHHHHHHHHHhh
Confidence            88999999986 69999999999999999853           47899999 99998753 2    23344556665543

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.88  E-value=5.2e-24  Score=161.36  Aligned_cols=129  Identities=14%  Similarity=0.162  Sum_probs=103.7

Q ss_pred             CCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCH--
Q 028808           45 AQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDP--  122 (203)
Q Consensus        45 APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~--  122 (203)
                      +|..+|++.+|         ++++|++ ++|| +||+.||++|||+|..| +|.+++++++++..++. +++|+.+..  
T Consensus         3 ~~~~~l~~~~~---------~~~~l~~-~~gk-~vvl~F~a~wC~~C~~~-~~~l~~l~~~~~~~~~~-~i~v~~~~~~~   69 (143)
T d2fy6a1           3 HTLSTLKTADN---------RPASVYL-KKDK-PTLIKFWASWCPLCLSE-LGQTEKWAQDAKFSSAN-LITVASPGFLH   69 (143)
T ss_dssp             HHHHTCEETTS---------CBGGGGC-CTTS-CEEEEEECTTCHHHHTT-HHHHHHHHHCGGGTTSE-EEEEECTTSTT
T ss_pred             CCcceeECCCC---------CEeeHHH-hCCC-EEEEEEECCCCcccccc-CcchhhhhhhhccCCcE-EEEEeeeeccc
Confidence            34556777765         8999999 5998 56778999999999999 99999999999999998 999987532  


Q ss_pred             ----HHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCCcccCCHH
Q 028808          123 ----YVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSKMKVSGGD  197 (203)
Q Consensus       123 ----~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~~~~~~a~  197 (203)
                          ....+|..+.+.. .||++.|.+++++++||+..           .|++|||| +|+|++++.+.    ++.+..+
T Consensus        70 ~~~~~~~~~~~~~~~~~-~~~~~~D~~~~~~~~~~v~~-----------~P~~~liD~~G~i~~~~~G~----~~~~~~~  133 (143)
T d2fy6a1          70 EKKDGDFQKWYAGLNYP-KLPVVTDNGGTIAQSLNISV-----------YPSWALIGKDGDVQRIVKGS----INEAQAL  133 (143)
T ss_dssp             CCCTTHHHHHHTTSCCT-TSCEEECTTCHHHHHTTCCS-----------SSEEEEECTTSCEEEEEESC----CCHHHHH
T ss_pred             ccchhhhhhhhhhcCCc-ccccccccchHHHHHcCCCc-----------cCEEEEECCCCEEEEEEECC----CCHHHHH
Confidence                2345565666554 59999999999999999853           58899999 99999998864    3456677


Q ss_pred             HHHhc
Q 028808          198 VILGQ  202 (203)
Q Consensus       198 ~vL~~  202 (203)
                      ++|+.
T Consensus       134 ~~l~~  138 (143)
T d2fy6a1         134 ALIRD  138 (143)
T ss_dssp             HHHHC
T ss_pred             HHHHH
Confidence            76664

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.86  E-value=8e-23  Score=155.36  Aligned_cols=123  Identities=14%  Similarity=0.107  Sum_probs=97.6

Q ss_pred             CCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC-H
Q 028808           44 AAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND-P  122 (203)
Q Consensus        44 ~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~-~  122 (203)
                      +||+|++++..|. ...+.+.+.+++++ ++|| +||+.||++|||+|..+ +|.+.+++++   .+++ +++|+.++ .
T Consensus         2 paP~~~lp~~~g~-~~~~~~~~~~~~~~-~kgK-~vll~fwa~wC~~C~~~-~p~l~~l~~~---~~~~-~~~i~~~~~~   73 (144)
T d1knga_           2 PAPQTALPPLEGL-QADNVQVPGLDPAA-FKGK-VSLVNVWASWCVPCHDE-APLLTELGKD---KRFQ-LVGINYKDAA   73 (144)
T ss_dssp             BCCCCCBCCCTTC-EETTEECCCBCGGG-GTTS-CEEEEEECTTCHHHHHH-HHHHHHHTTC---TTSE-EEEEEESCCH
T ss_pred             CCCCCCCCCCCCc-cccCCcCCccCHHH-hCCC-EEEEEeecccccccccc-Cchhhhhhhc---cCce-eEEEEeeech
Confidence            4899999887641 00112236799999 5998 67778999999999999 8998887544   4677 99998765 4


Q ss_pred             HHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808          123 YVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       123 ~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~  186 (203)
                      ...++|.++++.. .++++.|+++++++.||+..           .|++|||| +|+|++++++.
T Consensus        74 ~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~v~~-----------~P~~~liD~~G~i~~~~~G~  126 (144)
T d1knga_          74 DNARRFLGRYGNP-FGRVGVDANGRASIEWGVYG-----------VPETFVVGREGTIVYKLVGP  126 (144)
T ss_dssp             HHHHHHHHHHCCC-CSEEEEETTSHHHHHTTCCS-----------SCEEEEECTTSBEEEEEESC
T ss_pred             HHHHHHHHHcCCc-cccccccccchhhhhcCccc-----------cceEEEEcCCCeEEEEEeCC
Confidence            6788899999987 46689999999999999852           58899999 99999998864

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.85  E-value=2e-20  Score=146.20  Aligned_cols=146  Identities=14%  Similarity=0.141  Sum_probs=104.9

Q ss_pred             CCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCC-CCCccchhhHHHhHHHHHHcC--CcEE
Q 028808           38 GSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTG-VCSNQHVPSYKNNIDKFKAKG--IDSV  114 (203)
Q Consensus        38 G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp-~C~~ehl~~l~~~~~~f~~~g--v~~v  114 (203)
                      ++++.-++|+|+|++.+|         +.++|++ ++|| +||++|+.+||| .|..+ ++.|.+++++|++.|  +. +
T Consensus         4 ~~p~~~~~p~F~l~d~~G---------~~vsl~d-~~Gk-~vvl~F~~t~Cp~~C~~~-~~~l~~~~~~~~~~~~~v~-~   70 (172)
T d1xzoa1           4 KDPLNYEVEPFTFQNQDG---------KNVSLES-LKGE-VWLADFIFTNCETICPPM-TAHMTDLQKKLKAENIDVR-I   70 (172)
T ss_dssp             CSCCCEECCCCEEECTTS---------CEEETGG-GTTC-CEEEEEECSCCSSCCCSH-HHHHHHHHHHHHHTTCCCE-E
T ss_pred             cCCCCCcCCCeEEEcCCC---------CEEcHHH-hCCC-EEEEEEeccccccccccc-chhhhhhhhhhcccccccc-c
Confidence            444433479999999986         8999999 5998 567788999997 79999 999999999998755  65 8


Q ss_pred             EEEecC----CHHHHHHHHHHhCCCC-ceEEEeeCCchHH-----HHcCCccccccccCCCCcceEEEEEe-CCEEEEEE
Q 028808          115 ICVAVN----DPYVMNGWAEKLQAKD-VIEFYGDFDGSFH-----KSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALN  183 (203)
Q Consensus       115 i~IS~d----~~~~~~~~~~~~~l~~-~fpllsD~~~~v~-----~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~  183 (203)
                      ++||.|    +++.+++|++.+++.. ++.+|++.+.+..     +.|++....+.......-.+.+|||| +|+|+..+
T Consensus        71 v~isiDp~~Dtp~~l~~y~~~~~~~~~~w~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~  150 (172)
T d1xzoa1          71 ISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDY  150 (172)
T ss_dssp             EEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEE
T ss_pred             cccccccccchHHHHHHHHHHhccccccceeeccchHHHHHHHHHhheeeEEeccCCCceEeeeeEEEEEcCCCeEEEEE
Confidence            889874    5788999999998751 4678988766643     44555432211000000125689999 99999887


Q ss_pred             eecCCCCcccCCHHHHHh
Q 028808          184 VEEAPSKMKVSGGDVILG  201 (203)
Q Consensus       184 ~~~~~~~~~~~~a~~vL~  201 (203)
                      .+.+.     ...+++++
T Consensus       151 ~g~~~-----~~~~~l~~  163 (172)
T d1xzoa1         151 NGVEN-----TPYDDIIS  163 (172)
T ss_dssp             ESSSS-----CCHHHHHH
T ss_pred             cCCCC-----CCHHHHHH
Confidence            65432     34555554

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=2.1e-21  Score=146.03  Aligned_cols=103  Identities=16%  Similarity=0.167  Sum_probs=87.1

Q ss_pred             eeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC-HHHHHHHHHHhCCCCceEEEee
Q 028808           65 ATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND-PYVMNGWAEKLQAKDVIEFYGD  143 (203)
Q Consensus        65 ~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~-~~~~~~~~~~~~l~~~fpllsD  143 (203)
                      +.++++++.+|| +||++||++|||+|..| +|.|+++    ++.++. +++++.++ ......+..+.+.. .++++.|
T Consensus        10 ~~~~~~~l~~Gk-~vvl~FwatWC~pC~~e-~p~l~~~----~~~~~~-vi~i~~~~~~~~~~~~~~~~~~~-~~~~~~d   81 (136)
T d1z5ye1          10 QFYQADVLTQGK-PVLLNVWATWCPTSRAE-HQYLNQL----SAQGIR-VVGMNYKDDRQKAISWLKELGNP-YALSLFD   81 (136)
T ss_dssp             CEECHHHHHSSS-CEEEEEECTTCHHHHHH-HHHHHHH----HHTTCC-EEEEEESCCHHHHHHHHHHHCCC-CSEEEEE
T ss_pred             cEecHHHHcCCC-EEEEEEEcCcCCCcCcc-ccchhhh----hhhhhh-hcccccccchhhhHHHHHHcCCc-cceeecc
Confidence            889988844788 67789999999999999 9998765    457898 99999875 46678888888876 4678899


Q ss_pred             CCchHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808          144 FDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       144 ~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~  186 (203)
                      +++.+++.||+.           +.|++|||| +|+|++.+.|.
T Consensus        82 ~~~~~~~~~~v~-----------~~P~~~liD~~G~i~~~~~G~  114 (136)
T d1z5ye1          82 GDGMLGLDLGVY-----------GAPETFLIDGNGIIRYRHAGD  114 (136)
T ss_dssp             SSCHHHHHHTCC-----------SBSEEEEECTTSCEEEEEESC
T ss_pred             cchhHHHhcccC-----------CcceEEEEcCCCEEEEEEEcC
Confidence            999999999985           358899999 99999999874

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=99.82  E-value=2.5e-21  Score=147.36  Aligned_cols=117  Identities=14%  Similarity=0.202  Sum_probs=91.7

Q ss_pred             CCCccccCCCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHH-HcCCcEEE
Q 028808           37 VGSDIVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFK-AKGIDSVI  115 (203)
Q Consensus        37 ~G~~~~~~APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~-~~gv~~vi  115 (203)
                      +|+.    +|+|+....+|         .+++|++ ++|| +||++||++||++|..| +|.|+++++++. +.++. |+
T Consensus         4 ~~k~----~P~~~~~~~~~---------~~v~l~~-~~GK-~vvl~FwatwC~~C~~~-~p~l~~l~~~~~~~~~~~-vi   66 (144)
T d1o73a_           4 LAKY----LPGATNLLSKS---------GEVSLGS-LVGK-TVFLYFSASWCPPCRGF-TPVLAEFYEKHHVAKNFE-VV   66 (144)
T ss_dssp             GGGT----SCTTCCBBCTT---------SCBCSGG-GTTC-EEEEEEECTTCHHHHHH-HHHHHHHHHHHTTTTTEE-EE
T ss_pred             cccC----CCCceeeccCC---------CEEeHHH-hCCC-EEEEEeChhhCccchhh-hHHHHHHHHHHhhccCeE-EE
Confidence            4666    59999887664         5799999 5998 77889999999999999 999999999995 56788 99


Q ss_pred             EEecCCH-HHHHHHHHHhCCCCceEEEeeC---CchHHHHcCCccccccccCCCCcceEEEEEe-C-CEEEEEEe
Q 028808          116 CVAVNDP-YVMNGWAEKLQAKDVIEFYGDF---DGSFHKSLDLGKDLSAALLGPRSERWSAYVE-D-GRIKALNV  184 (203)
Q Consensus       116 ~IS~d~~-~~~~~~~~~~~l~~~fpllsD~---~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-d-G~I~~~~~  184 (203)
                      +||.|+. ...++|.++.+.   +.+..|.   ...+++.||+.           ..|++|||| | |+|+..+.
T Consensus        67 ~is~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~y~v~-----------~~Pt~~lID~~~G~Ii~~~~  127 (144)
T d1o73a_          67 LISWDENESDFHDYYGKMPW---LALPFDQRSTVSELGKTFGVE-----------SIPTLITINADTGAIIGTQA  127 (144)
T ss_dssp             EEECCSSHHHHHHHHTTCSS---EECCTTCHHHHHHHHHHHTCC-----------SSSEEEEEETTTCCEEESCH
T ss_pred             EEecchhHHHHHHHHHhccc---cceeeeccchHHHHHHHcCCC-----------cCCEEEEEECCCCEEEeecc
Confidence            9999865 556677766553   4443444   33588999985           357899999 8 89987643

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.79  E-value=1.3e-20  Score=142.52  Aligned_cols=114  Identities=15%  Similarity=0.242  Sum_probs=89.1

Q ss_pred             CCceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHc-CCcEEEEEecCCH-
Q 028808           45 AQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAK-GIDSVICVAVNDP-  122 (203)
Q Consensus        45 APdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~-gv~~vi~IS~d~~-  122 (203)
                      +|+|++.+.+|         ++++|++ ++|| +||++||++|||+|..+ ++.+.+++++|... ++. +++||.|+. 
T Consensus         6 ~P~~~~~~~~g---------~~v~l~~-l~GK-~vll~Fwa~wC~~C~~~-~~~l~~l~~~~~~~~~~~-~v~is~d~~~   72 (144)
T d1o8xa_           6 LPGIEKLRRGD---------GEVEVKS-LAGK-LVFFYFSASWCPPARGF-TPQLIEFYDKFHESKNFE-VVFCTWDEEE   72 (144)
T ss_dssp             STTCCEEEETT---------EEEEGGG-GTTC-EEEEEEECTTCHHHHHH-HHHHHHHHHHHTTTTTEE-EEEEECCCSH
T ss_pred             CCCcEeEcCCC---------CEEeHHH-hCCC-EEEEEeccccccccccc-cchhHHhhhhcccccccc-cccccccccH
Confidence            69999999875         8999999 5998 67889999999999999 99999999999654 676 999999864 


Q ss_pred             HHHHHHHHHhCCCCceEEE-eeCCchHHHHcCCccccccccCCCCcceEEEEEe-C-CEEEEEE
Q 028808          123 YVMNGWAEKLQAKDVIEFY-GDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVE-D-GRIKALN  183 (203)
Q Consensus       123 ~~~~~~~~~~~l~~~fpll-sD~~~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-d-G~I~~~~  183 (203)
                      .....+..+.... .++++ .|...++++.||+..           .|++|||| | |+|+...
T Consensus        73 ~~~~~~~~~~~~~-~~~~~~~d~~~~l~~~y~v~~-----------~Pt~~liD~~~G~Vi~~~  124 (144)
T d1o8xa_          73 DGFAGYFAKMPWL-AVPFAQSEAVQKLSKHFNVES-----------IPTLIGVDADSGDVVTTR  124 (144)
T ss_dssp             HHHHHHHTTCSSE-ECCGGGHHHHHHHHHHTTCCS-----------SSEEEEEETTTCCEEESC
T ss_pred             HHHHHHHhhcccc-ceeeecccchhhHHHHcCCCc-----------CCEEEEEeCCCCEEEEEe
Confidence            4445555443321 23433 355678999999853           57899999 8 8997654

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.78  E-value=7.7e-20  Score=139.49  Aligned_cols=101  Identities=16%  Similarity=0.195  Sum_probs=82.1

Q ss_pred             eeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHc-CCcEEEEEecCC-HHHHHHHHHHhCCCCceEEEe
Q 028808           65 ATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAK-GIDSVICVAVND-PYVMNGWAEKLQAKDVIEFYG  142 (203)
Q Consensus        65 ~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~-gv~~vi~IS~d~-~~~~~~~~~~~~l~~~fplls  142 (203)
                      +.++|+++ +|| +||++|||+||++|..+ +|.|+++++++++. ++. |++||.|. ....++|.++++..  ++.+.
T Consensus        19 ~~v~ls~l-~GK-~vll~FwAtWC~pC~~~-~p~L~~l~~~~~~~~~~~-vi~vs~D~~~~~~~~~~~~~~~~--~~~~~   92 (144)
T d1i5ga_          19 ADIALPSL-AGK-TVFFYFSASWCPPSRAF-TPQLIDFYKAHAEKKNFE-VMLISWDESAEDFKDYYAKMPWL--ALPFE   92 (144)
T ss_dssp             EEEEGGGG-TTS-EEEEEEECTTCHHHHHH-HHHHHHHHHHHTTTTTEE-EEEEECCSSHHHHHHHHTTCSSE--ECCTT
T ss_pred             CEeeHHHc-CCC-EEEEEEEecCCchHhhh-hHhHHHHHHHHHhccCcE-EEEEeccccHHHHHHHHHhCCCC--ceeeE
Confidence            78999995 998 77889999999999999 99999999999864 677 99999985 46677888888764  55555


Q ss_pred             eCC--chHHHHcCCccccccccCCCCcceEEEEEe-C-CEEEEE
Q 028808          143 DFD--GSFHKSLDLGKDLSAALLGPRSERWSAYVE-D-GRIKAL  182 (203)
Q Consensus       143 D~~--~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-d-G~I~~~  182 (203)
                      |.+  ..+++.||+..           .|++|||| | |+|+..
T Consensus        93 d~~~~~~l~~~y~v~~-----------iPt~~lid~~~G~vi~~  125 (144)
T d1i5ga_          93 DRKGMEFLTTGFDVKS-----------IPTLVGVEADSGNIITT  125 (144)
T ss_dssp             CHHHHHHHHHHTTCCS-----------SSEEEEEETTTCCEEES
T ss_pred             ChHHHHHHHHHCCCCC-----------cCEEEEEeCCCCEEEee
Confidence            554  34788999853           48899999 7 899754

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.4e-15  Score=120.53  Aligned_cols=86  Identities=10%  Similarity=0.159  Sum_probs=70.2

Q ss_pred             CceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC----
Q 028808           46 QDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND----  121 (203)
Q Consensus        46 Pdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~----  121 (203)
                      -||++.+++|   |     ++++|++ ++|| |||+.+||+||++|..+ .+.|++++++|+++|+. |+++.+|+    
T Consensus         4 ydf~~~~l~~---g-----~~vsL~~-ykGK-vvLivN~AS~Cg~t~~~-y~~L~~L~~ky~~~g~~-Il~fP~nqF~~q   71 (184)
T d2f8aa1           4 YAFSARPLAG---G-----EPVSLGS-LRGK-VLLIENVASLGGTTVRD-YTQMNELQRRLGPRGLV-VLGFPCNQFGHQ   71 (184)
T ss_dssp             GGCEECBTTC---S-----SCEEGGG-GTTS-EEEEEEECSSSTTHHHH-HHHHHHHHHHHGGGTEE-EEEEECCCSTTT
T ss_pred             eeeEEEECCC---C-----CEecHHH-cCCC-EEEEEEecccCCcchhh-hHHHHHhhhhhccccee-EEEeeccccccc
Confidence            6899999874   3     7899999 5998 78888999999999998 99999999999999998 99998774    


Q ss_pred             ----HHHHHHHHHHh----CCCCceEEEee
Q 028808          122 ----PYVMNGWAEKL----QAKDVIEFYGD  143 (203)
Q Consensus       122 ----~~~~~~~~~~~----~l~~~fpllsD  143 (203)
                          .+..++|++..    +...+||+...
T Consensus        72 E~~~~~ei~~f~~~~~~~~~~~~~f~~~~k  101 (184)
T d2f8aa1          72 ENAKNEEILNSLKYVRPGGGFEPNFMLFEK  101 (184)
T ss_dssp             TCSCHHHHHHHHHHTSSCTTCCCSSEEBCC
T ss_pred             cccchhhhhhhhheecccccccccccccee
Confidence                34677888753    22124888764

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.2e-14  Score=109.51  Aligned_cols=123  Identities=9%  Similarity=0.072  Sum_probs=88.6

Q ss_pred             ceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCC-CCCccchhhHHHhHHHHHHcCCcE---EEEEec---
Q 028808           47 DVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTG-VCSNQHVPSYKNNIDKFKAKGIDS---VICVAV---  119 (203)
Q Consensus        47 df~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp-~C~~ehl~~l~~~~~~f~~~gv~~---vi~IS~---  119 (203)
                      ||+|+|.+|         ++++|++ |+|| +||++||.+||| .|..+ ++.+.++++++++.+...   +..++.   
T Consensus         2 dF~L~d~~G---------~~vsl~d-~~GK-~vll~F~~t~C~~~C~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (160)
T d1wp0a1           2 PFSLTTHTG---------ERKTDKD-YLGQ-WLLIYFGFTHCPDVCPEE-LEKMIQVVDEIDSITTLPDLTPLFISIDPE   69 (160)
T ss_dssp             CCEEEETTS---------CEEEGGG-GTTS-EEEEEEECTTCSSHHHHH-HHHHHHHHHHHHHCTTSCCEEEEEEESCTT
T ss_pred             CeEEEcCCC---------CEEcHHH-hCCC-EEEEEEECCCCccccccc-hHHHHHHHHHhhcccccccccccccccCCC
Confidence            799999986         8999999 5998 677789999997 59888 899999999987765321   334554   


Q ss_pred             -CCHHHHHHHHHHhCCCCceEEEeeCC---chHHHHcCCccccccccC---CCC-cceEEEEEe-CCEEEEEE
Q 028808          120 -NDPYVMNGWAEKLQAKDVIEFYGDFD---GSFHKSLDLGKDLSAALL---GPR-SERWSAYVE-DGRIKALN  183 (203)
Q Consensus       120 -d~~~~~~~~~~~~~l~~~fpllsD~~---~~v~~~yGv~~~~~~~g~---~~~-~~r~tfIId-dG~I~~~~  183 (203)
                       +.+....++....+.+  +..+.+..   ..+.++|++.......+.   ... -.+.+|||| +|+|+.++
T Consensus        70 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~  140 (160)
T d1wp0a1          70 RDTKEAIANYVKEFSPK--LVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYF  140 (160)
T ss_dssp             TCCHHHHHHHHHTTCTT--CEEEECCHHHHHHHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEE
T ss_pred             cccHHHHHHHHhhcCCC--cccccCchHHhhHHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEEE
Confidence             3456777888888875  77777663   356788887654321110   000 125689999 99999886

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.34  E-value=1.9e-12  Score=97.05  Aligned_cols=126  Identities=8%  Similarity=0.016  Sum_probs=73.6

Q ss_pred             CceEEeccccccCCCCCCceeeecccccCCCeEEEEEeeCCCCCCC-CccchhhHHHhHHHHHHc---CCcEEEEEecCC
Q 028808           46 QDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVC-SNQHVPSYKNNIDKFKAK---GIDSVICVAVND  121 (203)
Q Consensus        46 Pdf~l~~~~g~~~G~~~~~~~vsL~dl~~gk~vVL~~f~~~~cp~C-~~ehl~~l~~~~~~f~~~---gv~~vi~IS~d~  121 (203)
                      +||+|+|.+|         ++++|++ ++|| ++|++||.+|||.| ... ...+....+.+++.   .+. +..++.+.
T Consensus         7 ~dF~l~d~~G---------~~vsl~~-~~GK-~vli~f~~t~c~~~c~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   73 (169)
T d2b7ka1           7 GPFHLEDMYG---------NEFTEKN-LLGK-FSIIYFGFSNCPDICPDE-LDKLGLWLNTLSSKYGITLQ-PLFITCDP   73 (169)
T ss_dssp             CCCEEEETTS---------CEEEGGG-GTTS-CEEEEEECTTCCSHHHHH-HHHHHHHHHHHHHHHCCCCE-EEEEESCT
T ss_pred             CCeEEEeCCC---------CEECHHH-HCCC-EEEEEEeccccCCcccch-hhhhhhhhhhccccccccce-eeeecccc
Confidence            7899999986         8999999 5999 56677888888754 444 45555555555443   333 55555543


Q ss_pred             H----HHHHHHHHHhCCCCceEEEeeC---CchHHHHcCCccccccc-----cCCCCcceEEEEEe-CCEEEEEEeec
Q 028808          122 P----YVMNGWAEKLQAKDVIEFYGDF---DGSFHKSLDLGKDLSAA-----LLGPRSERWSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       122 ~----~~~~~~~~~~~l~~~fpllsD~---~~~v~~~yGv~~~~~~~-----g~~~~~~r~tfIId-dG~I~~~~~~~  186 (203)
                      .    .....+....+..  ...+...   .....+.|++.......     +....-.+.+|||| +|+|+.++...
T Consensus        74 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~G~vv~~~~~~  149 (169)
T d2b7ka1          74 ARDSPAVLKEYLSDFHPS--ILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRN  149 (169)
T ss_dssp             TTCCHHHHHHHHTTSCTT--CEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTT
T ss_pred             ccCchhhhhhhhcccccc--ccccccchhhhhhhhhhhheeeeecccCCcccCceeeccceEEEECCCCeEEEEECCC
Confidence            2    3333444444432  4444443   33455667765432211     11112246799999 99999987654

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=98.96  E-value=4.4e-10  Score=79.58  Aligned_cols=88  Identities=15%  Similarity=0.148  Sum_probs=62.0

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      +.++.||+.||++||++|... .|.+.++..+++++ +. ++.|..                       |.+..++++|+
T Consensus        15 ~~~k~vvv~F~a~wC~~C~~~-~~~~~~l~~~~~~~-~~-~~~vd~-----------------------~~~~~~~~~~~   68 (105)
T d1nw2a_          15 QGDKPVLVDFWAAWCGPCRMM-APVLEEFAEAHADK-VT-VAKLNV-----------------------DENPETTSQFG   68 (105)
T ss_dssp             TSSSCEEEEEECTTCHHHHHH-HHHHHHHHHHHTTT-CE-EEEEET-----------------------TTCHHHHHHTT
T ss_pred             hCCCcEEEEEECCCCCCcccc-cchhhhhhhhcCCc-eE-EEEEEC-----------------------CCCcccHHHCC
Confidence            333467778999999999999 89999999998753 66 766655                       34456677777


Q ss_pred             CccccccccCCCCcceEEEEEeCCEEEEEEeecCCCCcccCCHHHHHhc
Q 028808          154 LGKDLSAALLGPRSERWSAYVEDGRIKALNVEEAPSKMKVSGGDVILGQ  202 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~~~~~~~~~~a~~vL~~  202 (203)
                      +..           .|+.+++.+|+.+..+.|..    +.++.++.|++
T Consensus        69 V~~-----------~Pt~~~~~~G~~~~~~~G~~----~~~~l~~~i~~  102 (105)
T d1nw2a_          69 IMS-----------IPTLILFKGGEPVKQLIGYQ----PKEQLEAQLAD  102 (105)
T ss_dssp             CCB-----------SSEEEEEETTEEEEEEESCC----CHHHHHHHTTT
T ss_pred             cce-----------eeEEEEEECCEEEEEEECCC----CHHHHHHHHHH
Confidence            753           46555567999999887642    23444555543

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.94  E-value=5.8e-10  Score=79.85  Aligned_cols=80  Identities=14%  Similarity=0.214  Sum_probs=57.5

Q ss_pred             ecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCch
Q 028808           68 PIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGS  147 (203)
Q Consensus        68 sL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~  147 (203)
                      .|.+ ..|| +||+.||++||++|... .|.|+++++++++. +. ++.|..|                       .+..
T Consensus        19 ~l~~-~~~k-~vlv~f~a~wC~~C~~~-~p~~~~l~~~~~~~-~~-~~~i~~d-----------------------~~~~   70 (111)
T d1xwaa_          19 QLTK-ASGK-LVVLDFFATWCGPCKMI-SPKLVELSTQFADN-VV-VLKVDVD-----------------------ECED   70 (111)
T ss_dssp             HHHH-HTTS-EEEEEEECTTCHHHHHH-HHHHHHHHHHTTTT-EE-EEEEETT-----------------------TCHH
T ss_pred             HHHh-cCCC-EEEEEEECCcccCcccc-chhHHHHhhhcccc-eE-EEEEEee-----------------------cCcc
Confidence            3555 3677 67889999999999999 89999999888653 33 4555443                       3445


Q ss_pred             HHHHcCCccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          148 FHKSLDLGKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       148 v~~~yGv~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      ++++||+..           .|+.+++.+|+++..+.|.
T Consensus        71 l~~~~~V~~-----------~Pt~~~~~~G~~v~~~~G~   98 (111)
T d1xwaa_          71 IAMEYNISS-----------MPTFVFLKNGVKVEEFAGA   98 (111)
T ss_dssp             HHHHTTCCS-----------SSEEEEEETTEEEEEEESC
T ss_pred             hhhcCCCcc-----------ccEEEEEECCEEEEEEeCC
Confidence            677777753           4655555699999988874

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.86  E-value=5.3e-09  Score=73.85  Aligned_cols=78  Identities=9%  Similarity=-0.009  Sum_probs=53.3

Q ss_pred             CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCC
Q 028808           75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDL  154 (203)
Q Consensus        75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv  154 (203)
                      +++++|+.|+++|||+|... .|.+++++.+........|..+..|..                     ....++++||+
T Consensus        14 ~~~v~i~~F~a~wC~~C~~~-~p~~~~la~~~~~~~~~~v~~~~id~~---------------------~~~~l~~~~~V   71 (107)
T d1a8la2          14 DQDVRILVFVTPTCPYCPLA-VRMAHKFAIENTKAGKGKILGDMVEAI---------------------EYPEWADQYNV   71 (107)
T ss_dssp             CSCEEEEEEECSSCTTHHHH-HHHHHHHHHHHHHTTCCCEEEEEEEGG---------------------GCHHHHHHTTC
T ss_pred             CCCeEEEEEEcCccccchhh-ChhHHhhhhhhhhccCCcEEEEEeccc---------------------ccccccccccc
Confidence            35577888999999999998 899999877655432221444444321                     12357788888


Q ss_pred             ccccccccCCCCcceEEEEEe-CCEEEEEEeec
Q 028808          155 GKDLSAALLGPRSERWSAYVE-DGRIKALNVEE  186 (203)
Q Consensus       155 ~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~  186 (203)
                      ..           .|+ +++. +|+++..++|.
T Consensus        72 ~~-----------vPT-i~i~~~G~~~~~~~G~   92 (107)
T d1a8la2          72 MA-----------VPK-IVIQVNGEDRVEFEGA   92 (107)
T ss_dssp             CS-----------SCE-EEEEETTEEEEEEESC
T ss_pred             cc-----------ceE-EEEEeCCeEEEEEECC
Confidence            53           464 5666 99999988764

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=98.84  E-value=4.1e-09  Score=74.74  Aligned_cols=73  Identities=12%  Similarity=0.154  Sum_probs=55.6

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK  156 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~  156 (203)
                      +.||+.||++||++|... .|.+.++.+++.+. +. ++.|..                       |.+..++++|++..
T Consensus        21 ~~vlv~f~a~wC~~C~~~-~~~~~~~~~~~~~~-~~-~~~vd~-----------------------d~~~~l~~~~~I~~   74 (108)
T d1thxa_          21 QPVLVYFWASWCGPCQLM-SPLINLAANTYSDR-LK-VVKLEI-----------------------DPNPTTVKKYKVEG   74 (108)
T ss_dssp             SCEEEEEECTTCTTHHHH-HHHHHHHHHHTTTT-CE-EEEEES-----------------------TTCHHHHHHTTCCS
T ss_pred             CcEEEEEECCCCCCcccc-chHHHHHHHhcCCc-ce-eceecc-----------------------cccHHHHHHhcccC
Confidence            356778999999999998 89999988888653 55 666654                       34456888888853


Q ss_pred             ccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          157 DLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       157 ~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                                 .|+.+++++|+++....|.
T Consensus        75 -----------~Pt~~~~~~g~~v~~~~G~   93 (108)
T d1thxa_          75 -----------VPALRLVKGEQILDSTEGV   93 (108)
T ss_dssp             -----------SSEEEEEETTEEEEEEESC
T ss_pred             -----------CCEEEEEECCEEEEEEeCC
Confidence                       4766777899999888764

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=98.77  E-value=8.1e-09  Score=72.59  Aligned_cols=73  Identities=14%  Similarity=0.199  Sum_probs=53.7

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK  156 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~  156 (203)
                      +.||+.||++||++|... .|.+.++.+++..+ +. ++.|..                       |.+..++++||+..
T Consensus        18 ~~vlv~F~a~wC~~C~~~-~~~~~~l~~~~~~~-~~-~~~v~~-----------------------d~~~~l~~~~~V~~   71 (104)
T d1fb6a_          18 VPVMVDFWAPWCGPCKLI-APVIDELAKEYSGK-IA-VYKLNT-----------------------DEAPGIATQYNIRS   71 (104)
T ss_dssp             SCEEEEEECTTCHHHHHH-HHHHHHHHHHTTTT-CE-EEEEET-----------------------TTCHHHHHHTTCCS
T ss_pred             CcEEEEEEcCccCCcccc-CchhHHHHHhhcCc-cc-eeEEec-----------------------ccchhhhhhcceee
Confidence            357778999999999998 89999988887654 33 554544                       33456888888853


Q ss_pred             ccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          157 DLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       157 ~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                                 .|+.+++.+|+.+..+.|.
T Consensus        72 -----------~Pt~~~~~~G~~v~~~~G~   90 (104)
T d1fb6a_          72 -----------IPTVLFFKNGERKESIIGA   90 (104)
T ss_dssp             -----------SSEEEEEETTEEEEEEEEC
T ss_pred             -----------eeEEEEEEcCeEEEEEeCC
Confidence                       4655555699999998864

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=98.77  E-value=4.7e-09  Score=74.30  Aligned_cols=74  Identities=11%  Similarity=0.149  Sum_probs=54.9

Q ss_pred             CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCC
Q 028808           75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDL  154 (203)
Q Consensus        75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv  154 (203)
                      +| .||+.||++||++|... .|.+.++.+++... +. ++-|..                       |.+..++++|++
T Consensus        19 ~k-pvlv~F~a~wC~~C~~~-~p~~~~~~~~~~~~-~~-~~~vd~-----------------------d~~~~l~~~~~V   71 (107)
T d1dbya_          19 SV-PVLVDFWAPWCGPCRII-APVVDEIAGEYKDK-LK-CVKLNT-----------------------DESPNVASEYGI   71 (107)
T ss_dssp             SS-CEEEEEECTTCHHHHHH-HHHHHHHHHHTTTT-CE-EEEEET-----------------------TTCHHHHHHHTC
T ss_pred             CC-cEEEEEECCCCCCcccc-ChHHHHHHHhhccc-ce-EEEEec-----------------------ccchhHHHHhcc
Confidence            44 57788999999999998 79998887776543 44 666644                       334567888888


Q ss_pred             ccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          155 GKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       155 ~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      ..           .|+.+++++|+.+....|.
T Consensus        72 ~~-----------~Pt~~~~~~G~~v~~~~G~   92 (107)
T d1dbya_          72 RS-----------IPTIMVFKGGKKCETIIGA   92 (107)
T ss_dssp             CS-----------SCEEEEESSSSEEEEEESC
T ss_pred             cc-----------eEEEEEEECCeEEEEEeCC
Confidence            53           4766677799999988764

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.75  E-value=3.4e-09  Score=76.43  Aligned_cols=74  Identities=7%  Similarity=0.102  Sum_probs=56.6

Q ss_pred             CeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCc
Q 028808           76 KKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLG  155 (203)
Q Consensus        76 k~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~  155 (203)
                      ...+++.||++||++|... .|.|.++.+++.  ++. ++-|..|+                       ..++++.||+.
T Consensus        26 ~~~vvv~F~a~wC~~C~~~-~p~l~~l~~~~~--~v~-~~~vd~d~-----------------------~~~l~~~~~V~   78 (113)
T d1r26a_          26 DILTVAWFTAVWCGPCKTI-ERPMEKIAYEFP--TVK-FAKVDADN-----------------------NSEIVSKCRVL   78 (113)
T ss_dssp             SSCEEEEEECTTCHHHHHT-HHHHHHHHHHCT--TSE-EEEEETTT-----------------------CHHHHHHTTCC
T ss_pred             CCeEEEEEECCCCccchhh-ceeccccccccc--ccc-cccccccc-----------------------chhhHHHcccc
Confidence            3468889999999999998 899999988874  576 77666543                       45677888885


Q ss_pred             cccccccCCCCcceEEEEEeCCEEEEEEeecC
Q 028808          156 KDLSAALLGPRSERWSAYVEDGRIKALNVEEA  187 (203)
Q Consensus       156 ~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~~  187 (203)
                      .           .|+.+++.+|+.+..++|.+
T Consensus        79 ~-----------~Pt~~~~~~G~~v~~~~G~~   99 (113)
T d1r26a_          79 Q-----------LPTFIIARSGKMLGHVIGAN   99 (113)
T ss_dssp             S-----------SSEEEEEETTEEEEEEESSC
T ss_pred             C-----------CCEEEEEECCEEEEEEeCCC
Confidence            3           46555556999999998754

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=1.1e-08  Score=72.36  Aligned_cols=74  Identities=14%  Similarity=0.244  Sum_probs=52.1

Q ss_pred             CeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCc
Q 028808           76 KKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLG  155 (203)
Q Consensus        76 k~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~  155 (203)
                      .+.|++.||++||++|... .|.+.++..++... +. ++-+..                       |.+..+++.||+.
T Consensus        20 ~~~v~v~F~a~wC~~C~~~-~~~~~~~a~~~~~~-~~-~~~vd~-----------------------d~~~~l~~~~~v~   73 (108)
T d2trxa_          20 DGAILVDFWAEWCGPCKMI-APILDEIADEYQGK-LT-VAKLNI-----------------------DQNPGTAPKYGIR   73 (108)
T ss_dssp             SSEEEEEEECTTCHHHHHH-HHHHHHHHHHTTTT-EE-EEEEET-----------------------TTCTTHHHHTTCC
T ss_pred             CCcEEEEEECCCCCCcccc-CcHHHHHHHHhhcc-ee-eeeccc-----------------------cchhhHHHHhCCC
Confidence            3467888999999999988 78888877665432 32 333332                       4456788899885


Q ss_pred             cccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          156 KDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       156 ~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      .           .|+.+++.+|+++....|.
T Consensus        74 ~-----------~PT~~~~~~G~~v~~~~G~   93 (108)
T d2trxa_          74 G-----------IPTLLLFKNGEVAATKVGA   93 (108)
T ss_dssp             S-----------SSEEEEEETTEEEEEEESC
T ss_pred             c-----------EEEEEEEECCEEEEEEeCC
Confidence            3           4655555699999988764

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=98.72  E-value=8.5e-09  Score=73.95  Aligned_cols=75  Identities=13%  Similarity=0.201  Sum_probs=56.4

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLD  153 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yG  153 (203)
                      .+| .|++.|+++||++|... .|.++++.+++..+ +. ++.|..|.                       +.+++++||
T Consensus        23 ~~k-~vvv~f~a~wC~~C~~~-~p~~~~l~~~~~~~-v~-~~~vd~d~-----------------------~~~l~~~~~   75 (112)
T d1ep7a_          23 EHK-PIVVDFTATWCGPCKMI-APLFETLSNDYAGK-VI-FLKVDVDA-----------------------VAAVAEAAG   75 (112)
T ss_dssp             HTC-CEEEEEECTTCHHHHHH-HHHHHHHHHHTTTT-SE-EEEEETTT-----------------------THHHHHHHT
T ss_pred             cCC-eEEEEEEcCCcCCCccc-chhhhhhhhcccce-EE-EEEeeccc-----------------------ccccccccc
Confidence            355 56778999999999999 89999999888642 66 77776643                       346778888


Q ss_pred             CccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          154 LGKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       154 v~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      +..           .|+.+++.+|+.+....+.
T Consensus        76 v~~-----------~Pt~~~~~~G~~v~~~~G~   97 (112)
T d1ep7a_          76 ITA-----------MPTFHVYKDGVKADDLVGA   97 (112)
T ss_dssp             CCB-----------SSEEEEEETTEEEEEEESC
T ss_pred             ccC-----------CCEEEEEECCEEEEEEeCc
Confidence            753           4655555699999998764

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=6.8e-10  Score=81.01  Aligned_cols=76  Identities=16%  Similarity=0.306  Sum_probs=57.1

Q ss_pred             CCCeEEEEEeeCC-------CCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCc
Q 028808           74 KGKKVVIFGLPGA-------YTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDG  146 (203)
Q Consensus        74 ~gk~vVL~~f~~~-------~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~  146 (203)
                      +|| +|+++|||+       |||+|... .|.+.++++++.+ ++. ++.|.+++.                |.+.|.+.
T Consensus        20 ~gk-~v~v~F~a~~~~~g~sWC~pCk~~-~P~~~~l~~~~~~-~~~-~~~vdv~~~----------------~~~~d~~~   79 (119)
T d1woua_          20 NGK-TIFAYFTGSKDAGGKSWCPDCVQA-EPVVREGLKHISE-GCV-FIYCQVGEK----------------PYWKDPNN   79 (119)
T ss_dssp             TTS-EEEEEEECCBCTTCCBSCHHHHHH-HHHHHHHGGGCCT-TEE-EEEEECCCH----------------HHHHCTTC
T ss_pred             CCC-EEEEEEEecCCCCCCCCChhHHHH-HHHHHHHHHhcCC-ceE-EEEEECCCC----------------cccchhhh
Confidence            677 678889996       99999999 8999998887764 366 888888763                22346778


Q ss_pred             hHHHHcCCccccccccCCCCcceEEEEEeCC-EEE
Q 028808          147 SFHKSLDLGKDLSAALLGPRSERWSAYVEDG-RIK  180 (203)
Q Consensus       147 ~v~~~yGv~~~~~~~g~~~~~~r~tfIIddG-~I~  180 (203)
                      .++++|||..           .|+.+++++| ++.
T Consensus        80 ~l~~~~~V~~-----------iPT~i~~~~g~~l~  103 (119)
T d1woua_          80 DFRKNLKVTA-----------VPTLLKYGTPQKLV  103 (119)
T ss_dssp             HHHHHHCCCS-----------SSEEEETTSSCEEE
T ss_pred             hHHHhCCeEE-----------EEEEEEEECCeEEe
Confidence            8999999853           4666666754 443

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=98.70  E-value=9.8e-09  Score=73.59  Aligned_cols=75  Identities=13%  Similarity=0.283  Sum_probs=53.7

Q ss_pred             CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCC
Q 028808           75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDL  154 (203)
Q Consensus        75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv  154 (203)
                      +++.||+.|+++||++|... .|.|.++.+++.  ++. ++-|..|                       ....++++|++
T Consensus        25 ~~k~vvv~F~a~wC~~C~~~-~p~~~~~~~~~~--~~~-~~~vd~d-----------------------~~~~l~~~~~I   77 (113)
T d1ti3a_          25 SQKLIVVDFTASWCPPCKMI-APIFAELAKKFP--NVT-FLKVDVD-----------------------ELKAVAEEWNV   77 (113)
T ss_dssp             SSSEEEEEEECSSCHHHHHH-HHHHHHHHHHCS--SEE-EEEEETT-----------------------TCHHHHHHHHC
T ss_pred             CCCEEEEEEEcCccccchhh-hhhhhhhhccCC--Cce-EEeeeee-----------------------ccccccccCee
Confidence            33478889999999999988 899988877663  344 5444433                       34567788887


Q ss_pred             ccccccccCCCCcceEEEEEeCCEEEEEEeecC
Q 028808          155 GKDLSAALLGPRSERWSAYVEDGRIKALNVEEA  187 (203)
Q Consensus       155 ~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~~  187 (203)
                      ..           .|+.+++.||+.+....|.+
T Consensus        78 ~~-----------~Pt~~~~k~G~~v~~~~G~~   99 (113)
T d1ti3a_          78 EA-----------MPTFIFLKDGKLVDKTVGAD   99 (113)
T ss_dssp             SS-----------TTEEEEEETTEEEEEEECCC
T ss_pred             cc-----------cceEEEEECCEEEEEEcCCC
Confidence            53           46555556999999998743

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=98.70  E-value=1.4e-08  Score=72.95  Aligned_cols=76  Identities=13%  Similarity=0.260  Sum_probs=56.2

Q ss_pred             CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCC
Q 028808           75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDL  154 (203)
Q Consensus        75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv  154 (203)
                      |.+.|++.||+.||++|... .|.|.++.+++.  ++. ++.|..|.                      .+.+++++||+
T Consensus        24 ~~k~vvv~f~a~wC~~C~~~-~p~~~~l~~~~~--~v~-~~~vd~~~----------------------~~~~l~~~~~V   77 (112)
T d1f9ma_          24 GDKPVVLDMFTQWCGPCKAM-APKYEKLAEEYL--DVI-FLKLDCNQ----------------------ENKTLAKELGI   77 (112)
T ss_dssp             TTSCEEEEEECTTCHHHHHH-HHHHHHHHHHCT--TSE-EEEEECSS----------------------TTHHHHHHHCC
T ss_pred             CCCEEEEEEEcCCCcchHHH-HHHHhhhccccc--cce-eecccccc----------------------cchhhHhheee
Confidence            33467788999999999988 799999988875  465 66665432                      13467788888


Q ss_pred             ccccccccCCCCcceEEEEEeCCEEEEEEeecC
Q 028808          155 GKDLSAALLGPRSERWSAYVEDGRIKALNVEEA  187 (203)
Q Consensus       155 ~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~~  187 (203)
                      ..           .|+.+++.+|+++....|.+
T Consensus        78 ~~-----------~Pt~~~~k~G~~v~~~~G~~   99 (112)
T d1f9ma_          78 RV-----------VPTFKILKENSVVGEVTGAK   99 (112)
T ss_dssp             SS-----------SSEEEEEETTEEEEEEESSC
T ss_pred             cc-----------CCEEEEEECCEEEEEEeCCC
Confidence            53           46566667999999988743

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.67  E-value=1.7e-08  Score=72.54  Aligned_cols=72  Identities=14%  Similarity=0.227  Sum_probs=53.3

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK  156 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~  156 (203)
                      ++||+.||++||++|... .|.|.++.+++.  ++. ++-|..|                       .+..++++||+..
T Consensus        29 ~~vlv~F~a~wC~~C~~~-~p~~~~l~~~~~--~~~-~~~vd~~-----------------------~~~~l~~~~~V~~   81 (114)
T d1xfla_          29 TLVVVDFTASWCGPCRFI-APFFADLAKKLP--NVL-FLKVDTD-----------------------ELKSVASDWAIQA   81 (114)
T ss_dssp             CEEEEEEECTTCHHHHHH-HHHHHHHHHHCS--SEE-EEEEETT-----------------------TSHHHHHHTTCCS
T ss_pred             CeEEEEEEcCCCCCcccc-ccchhhhccccc--ccc-eeEEEee-----------------------eceeeccccceee
Confidence            478889999999999998 799988887764  344 5545443                       3456788888853


Q ss_pred             ccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          157 DLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       157 ~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                                 .|+.+++.+|+++....|.
T Consensus        82 -----------~Pt~~~~~~G~~v~~~~G~  100 (114)
T d1xfla_          82 -----------MPTFMFLKEGKILDKVVGA  100 (114)
T ss_dssp             -----------SSEEEEEETTEEEEEEESC
T ss_pred             -----------eEEEEEEECCEEEEEEeCc
Confidence                       4655556799999988764

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=98.64  E-value=2.8e-08  Score=73.60  Aligned_cols=76  Identities=9%  Similarity=0.007  Sum_probs=56.1

Q ss_pred             CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCC
Q 028808           75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDL  154 (203)
Q Consensus        75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv  154 (203)
                      ++.+||+.||+.|||+|... .|-|.++.++|.++.+. +..|..|                       .+.++++.||+
T Consensus        35 ~~~vVll~f~a~wCp~C~~~-~pvl~ela~~~~~~~~~-~a~Vd~d-----------------------~~~~la~~~~V   89 (132)
T d2hfda1          35 PDGVVLLSSDPKRTPEVSDN-PVMIGELLREFPDYTWQ-VAIADLE-----------------------QSEAIGDRFGV   89 (132)
T ss_dssp             SEEEEEECSCCSCCSSSSCC-THHHHHHHTTCTTSCEE-EEEECHH-----------------------HHHHHHHHHTC
T ss_pred             CCcEEEEEeeCCCChhHHHH-HHHHHHHHHHccCCcce-eEEEEec-----------------------CCHHHHHhhcc
Confidence            34588889999999999999 89999999888765443 4444332                       23567777777


Q ss_pred             ccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          155 GKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       155 ~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      ..           .|+.+++.+|+.+....|.
T Consensus        90 ~~-----------~PT~~~~~~G~~v~~~~G~  110 (132)
T d2hfda1          90 FR-----------FPATLVFTGGNYRGVLNGI  110 (132)
T ss_dssp             CS-----------CCEEEEEETTEEEEEECCC
T ss_pred             Cc-----------ceeEEEEEcCcEeeeecCC
Confidence            53           4666666799999988764

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=1.3e-08  Score=71.88  Aligned_cols=72  Identities=14%  Similarity=0.198  Sum_probs=52.4

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK  156 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~  156 (203)
                      ++||+.||++||++|... .|.|.++.+++.+  +. ++-|..                       |.+..+++.||+..
T Consensus        21 k~vvv~F~a~wC~~C~~~-~p~~~~l~~~~~~--~~-~~~vd~-----------------------d~~~~~~~~~~V~~   73 (105)
T d2ifqa1          21 KLVVVDFSATWCGPCKMI-KPFFHSLSEKYSN--VI-FLEVDV-----------------------DDCQDVASECEVKC   73 (105)
T ss_dssp             SCEEEEEECTTCHHHHHH-HHHHHHHHHHCTT--SE-EEEEET-----------------------TTCHHHHHHTTCCB
T ss_pred             CEEEEEEEcCCccchhhh-hhhhhhhcccccc--ce-eeeccc-----------------------ccCHhHHHHcCceE
Confidence            478889999999999998 7999988877642  33 444443                       33445677787753


Q ss_pred             ccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          157 DLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       157 ~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                                 .|+.+++.||+.+....|.
T Consensus        74 -----------~Pt~~~~~~G~~v~~~~G~   92 (105)
T d2ifqa1          74 -----------MPTFQFFKKGQKVGEFSGA   92 (105)
T ss_dssp             -----------SSEEEEEETTEEEEEEESC
T ss_pred             -----------EEEEEEEECCEEEEEEeCC
Confidence                       4655555799999998874

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.63  E-value=6.5e-09  Score=75.73  Aligned_cols=76  Identities=11%  Similarity=0.122  Sum_probs=48.2

Q ss_pred             CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCC
Q 028808           75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDL  154 (203)
Q Consensus        75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv  154 (203)
                      +..+|++.|++.|||+|... .|-|.++.++|.+..+. +..|..                       |.+.++++.||+
T Consensus        29 ~~~~vll~f~a~wCp~C~~~-~pvl~eL~~~~~~~~~~-~~~Vd~-----------------------d~~~~l~~~~~V   83 (119)
T d2es7a1          29 GDGVILLSSDPRRTPEVSDN-PVMIAELLREFPQFDWQ-VAVADL-----------------------EQSEAIGDRFNV   83 (119)
T ss_dssp             CSEEEEECCCSCC----CCH-HHHHHHHHHTCTTSCCE-EEEECH-----------------------HHHHHHHHTTTC
T ss_pred             CCcEEEEeecCCCCccHHHH-HHHHHHHHHhcCCCceE-EEEEEC-----------------------CCCHHHHHhcCc
Confidence            34588899999999999999 89999999988765454 444533                       223457777777


Q ss_pred             ccccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          155 GKDLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       155 ~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                      ..           .|+.+++.||+.+....+.
T Consensus        84 ~~-----------~Pt~~~~~~G~~v~~~~G~  104 (119)
T d2es7a1          84 RR-----------FPATLVFTDGKLRGALSGI  104 (119)
T ss_dssp             CS-----------SSEEEEESCC----CEESC
T ss_pred             Cc-----------ceEEEEEEcCeEEEEeeCC
Confidence            53           4655666699999998764

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=2.6e-08  Score=70.93  Aligned_cols=73  Identities=8%  Similarity=0.080  Sum_probs=55.3

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK  156 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~  156 (203)
                      +++++.||++||++|... .|.|+++.+++.  ++. ++-|..|                       .+.++++.||+..
T Consensus        22 klvvv~F~a~wC~~Ck~~-~p~~~~la~~~~--~~~-f~~vd~d-----------------------~~~~l~~~~~v~~   74 (107)
T d1gh2a_          22 RLAVVKFTMRGCGPCLRI-APAFSSMSNKYP--QAV-FLEVDVH-----------------------QCQGTAATNNISA   74 (107)
T ss_dssp             SCEEEEEECSSCHHHHHH-HHHHHHHHHHCT--TSE-EEEEETT-----------------------TSHHHHHHTTCCS
T ss_pred             CEEEEEEECCCCCCcccc-chhhhccccccc--ccc-ccccccc-----------------------cchhhhhhcCcee
Confidence            378889999999999998 899999988875  465 6666543                       3456777888853


Q ss_pred             ccccccCCCCcceEEEEEeCCEEEEEEeecC
Q 028808          157 DLSAALLGPRSERWSAYVEDGRIKALNVEEA  187 (203)
Q Consensus       157 ~~~~~g~~~~~~r~tfIIddG~I~~~~~~~~  187 (203)
                                 .|+.++..+|+.+..+.|.+
T Consensus        75 -----------~Pt~~~~~~G~~v~~~~G~~   94 (107)
T d1gh2a_          75 -----------TPTFQFFRNKVRIDQYQGAD   94 (107)
T ss_dssp             -----------SSEEEEEETTEEEEEEESSC
T ss_pred             -----------ceEEEEEECCEEEEEEeCCC
Confidence                       46555556999999998753

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.57  E-value=4e-10  Score=86.34  Aligned_cols=62  Identities=3%  Similarity=0.008  Sum_probs=43.5

Q ss_pred             eecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCH-HHHHHHHHHhCC
Q 028808           67 TPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDP-YVMNGWAEKLQA  134 (203)
Q Consensus        67 vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~-~~~~~~~~~~~l  134 (203)
                      -.|++ ++++ ++++.||++|||+|..+ +|.|+++++++++  .. +..|+.|.. ...++|..+.+.
T Consensus        47 ~~l~~-~~~~-~~~l~~~~tWC~~C~~~-~P~l~~l~~~~~~--~~-~~~i~~d~~~~~~~~~~~~~~~  109 (166)
T d1z6na1          47 ERLQR-IERR-YRLLVAGEMWCPDCQIN-LAALDFAQRLQPN--IE-LAIISKGRAEDDLRQRLALERI  109 (166)
T ss_dssp             HHHHT-CCSC-EEEEEECCTTCHHHHHH-HHHHHHHHHHCTT--EE-EEEECHHHHHHHTTTTTTCSSC
T ss_pred             HHHHH-hcCC-eEEEEEEeCcCccHHHH-HHHHHHHHHHCCC--Cc-EEEEECccCHHHHHHHHHhccc
Confidence            35667 4776 66778999999999999 9999999988764  44 667776542 333344443443

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.47  E-value=5.5e-08  Score=68.26  Aligned_cols=72  Identities=14%  Similarity=0.219  Sum_probs=52.5

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK  156 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~  156 (203)
                      +.+++.|+++||++|... .|.+.++.+++.  ++. ++-+..|.                       ..+++++|++..
T Consensus        19 ~~vvv~F~a~wC~~C~~~-~~~~~~l~~~~~--~~~-~~~vd~d~-----------------------~~~~~~~~~V~~   71 (103)
T d1syra_          19 ELVIVDFFAEWCGPCKRI-APFYEECSKTYT--KMV-FIKVDVDE-----------------------VSEVTEKENITS   71 (103)
T ss_dssp             SEEEEEEECTTCHHHHHH-HHHHHHHHHHCT--TSE-EEEEETTT-----------------------THHHHHHTTCCS
T ss_pred             CcEEEEEeCCcccCcccc-cccchhhhhccc--ceE-EEeecccc-----------------------Ccceeeeeeeec
Confidence            367788999999999998 799999888875  344 65565433                       345777888753


Q ss_pred             ccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          157 DLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       157 ~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                                 .|+.++..+|+.+....|.
T Consensus        72 -----------~Pt~i~~k~G~~v~~~~G~   90 (103)
T d1syra_          72 -----------MPTFKVYKNGSSVDTLLGA   90 (103)
T ss_dssp             -----------SSEEEEEETTEEEEEEESC
T ss_pred             -----------ceEEEEEECCEEEEEEeCc
Confidence                       4644444699999998764

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=1.7e-08  Score=72.58  Aligned_cols=35  Identities=26%  Similarity=0.555  Sum_probs=29.1

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCc
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGID  112 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~  112 (203)
                      +.+|+.||++||++|... .|.+.++.++++..+..
T Consensus        25 k~vlV~Fya~wC~~C~~~-~p~~~~~~~~~~~~~~~   59 (120)
T d1meka_          25 KYLLVEFYAPWCGHCKAL-APEYAKAAGKLKAEGSE   59 (120)
T ss_dssp             SEEEEEEECSSCSTTSTT-HHHHHHHHHTTTTTCCC
T ss_pred             CcEEEEEECCCcCCcccc-chhhhhhcccccccccc
Confidence            367888999999999998 89999998888765443

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.42  E-value=9.6e-08  Score=68.34  Aligned_cols=74  Identities=11%  Similarity=0.165  Sum_probs=50.2

Q ss_pred             CeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCH---HHHHHHHHHhCCCCceEEEeeCCchHHHHc
Q 028808           76 KKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDP---YVMNGWAEKLQAKDVIEFYGDFDGSFHKSL  152 (203)
Q Consensus        76 k~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~---~~~~~~~~~~~l~~~fpllsD~~~~v~~~y  152 (203)
                      +..+++.|+++|||+|... .|.|.+...+++   .. +..+..+..   ...+.+                    +++|
T Consensus        26 ~~~~~v~f~~~~C~~C~~~-~p~l~~~~~~~~---~~-v~~v~~~~~~~~~~~~~~--------------------~~~~   80 (115)
T d1zmaa1          26 KETATFFIGRKTCPYCRKF-AGTLSGVVAETK---AH-IYFINSEEPSQLNDLQAF--------------------RSRY   80 (115)
T ss_dssp             TCCEEEEEECTTCHHHHHH-HHHHHHHHHHHC---CC-CEEEETTCGGGHHHHHHH--------------------HHHH
T ss_pred             CCCEEEEEcCCCCccHHHH-HHHHHHHHHHhh---hh-hhhheeeccccccccccc--------------------cccc
Confidence            3356778999999999999 899998877663   44 666666543   222334                    4455


Q ss_pred             CCccccccccCCCCcceEEEEEeCCEEEEEEee
Q 028808          153 DLGKDLSAALLGPRSERWSAYVEDGRIKALNVE  185 (203)
Q Consensus       153 Gv~~~~~~~g~~~~~~r~tfIIddG~I~~~~~~  185 (203)
                      |+.           ..|+.+++++|+++.+..+
T Consensus        81 ~V~-----------~~PTli~~~~gk~~~~~~G  102 (115)
T d1zmaa1          81 GIP-----------TVPGFVHITDGQINVRCDS  102 (115)
T ss_dssp             TCC-----------SSCEEEEEETTEEEEECCT
T ss_pred             ccc-----------cccEEEEEECCEEEEEEcC
Confidence            553           2466666779999877754

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.36  E-value=7.6e-08  Score=65.02  Aligned_cols=29  Identities=10%  Similarity=0.072  Sum_probs=23.7

Q ss_pred             EEEEEeeCCCCCCCCccchhhHHHhHHHHH
Q 028808           78 VVIFGLPGAYTGVCSNQHVPSYKNNIDKFK  107 (203)
Q Consensus        78 vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~  107 (203)
                      +.|+.|+++||++|... .|.+.++.+++.
T Consensus         4 v~v~~F~a~wC~~C~~~-~p~~~~~~~~~~   32 (85)
T d1fo5a_           4 VKIELFTSPMCPHCPAA-KRVVEEVANEMP   32 (85)
T ss_dssp             EEEEEEECCCSSCCCTH-HHHHHHHHHHCS
T ss_pred             eEEEEEECCCCcChHhh-hhhccccccccc
Confidence            56667999999999998 898888766553

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=1.7e-07  Score=69.73  Aligned_cols=73  Identities=12%  Similarity=0.153  Sum_probs=54.9

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK  156 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~  156 (203)
                      ++||+.||+.||++|... .|.|.++.++++++ +. ++.|..|+                       +.++++.|++..
T Consensus        23 k~vvv~F~a~wC~~C~~~-~p~l~~la~~~~~~-v~-~~~VDvd~-----------------------~~~la~~~~I~~   76 (137)
T d1qgva_          23 RVVVIRFGHDWDPTCMKM-DEVLYSIAEKVKNF-AV-IYLVDITE-----------------------VPDFNKMYELYD   76 (137)
T ss_dssp             SEEEEEEECTTSHHHHHH-HHHHHHHHHHHTTT-EE-EEEEETTT-----------------------CCTTTTSSCSCS
T ss_pred             CEEEEEEECCCCccchhc-ChHHHHHHHHhhcc-ce-EEEeeccc-----------------------cchhhhhcCeee
Confidence            488899999999999998 79999999998753 55 66676544                       235777888853


Q ss_pred             ccccccCCCCcceEEEEEeCCEEEEEEeec
Q 028808          157 DLSAALLGPRSERWSAYVEDGRIKALNVEE  186 (203)
Q Consensus       157 ~~~~~g~~~~~~r~tfIIddG~I~~~~~~~  186 (203)
                                 .|+.++..+|+.+....+.
T Consensus        77 -----------~PT~~~f~~g~~i~~~~g~   95 (137)
T d1qgva_          77 -----------PCTVMFFFRNKHIMIDLGT   95 (137)
T ss_dssp             -----------SCEEEEEETTEEEEEECC-
T ss_pred             -----------EEEEEEEeCCcEEEEEecC
Confidence                       4666666799888777654

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=2e-07  Score=66.40  Aligned_cols=97  Identities=13%  Similarity=0.103  Sum_probs=55.4

Q ss_pred             eecccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHc-CCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCC
Q 028808           67 TPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAK-GIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFD  145 (203)
Q Consensus        67 vsL~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~-gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~  145 (203)
                      ..|++ .+|| +||+.||++||++|... .|.+.+..+..+.. ++. .+.+..+...                   |.+
T Consensus        15 ~~l~~-~~gK-~vlv~F~a~wC~~C~~~-~~~~~~~~~v~~~~~~~~-~~~~~~~~~~-------------------~~~   71 (117)
T d2fwha1          15 QALVE-AKGK-PVMLDLYADWCVACKEF-EKYTFSDPQVQKALADTV-LLQANVTAND-------------------AQD   71 (117)
T ss_dssp             HHHHH-HTTS-CEEEEEECTTCHHHHHH-HHHTTTSHHHHHHTTTSE-EEEEECTTCC-------------------HHH
T ss_pred             HHHHH-cCCC-eEEEEEecccCCccccc-chhHHhHHHHHHhccceE-EEecccccch-------------------hHH
Confidence            34566 3788 56778999999999987 57664443333322 333 4444332110                   223


Q ss_pred             chHHHHcCCccccccccCCCCcceEEEEEe-CCEEEEEEeecCCCCcccCCHHHHHhc
Q 028808          146 GSFHKSLDLGKDLSAALLGPRSERWSAYVE-DGRIKALNVEEAPSKMKVSGGDVILGQ  202 (203)
Q Consensus       146 ~~v~~~yGv~~~~~~~g~~~~~~r~tfIId-dG~I~~~~~~~~~~~~~~~~a~~vL~~  202 (203)
                      .++++.||+..           .|+.+++| +|+++....-  .|   ..+++++++.
T Consensus        72 ~~l~~~~~v~~-----------~Pt~~~~~~~G~~~~~~~~--~G---~~~~~~~~~~  113 (117)
T d2fwha1          72 VALLKHLNVLG-----------LPTILFFDGQGQEHPQARV--TG---FMDAETFSAH  113 (117)
T ss_dssp             HHHHHHTTCCS-----------SSEEEEECTTSCBCGGGCB--CS---CCCHHHHHHH
T ss_pred             HHHHhhhehhh-----------ceEEEEEeCCCcEEecccc--cc---cCCHHHHHHH
Confidence            45666777642           47778888 8986643211  12   2456666654

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.10  E-value=5.2e-07  Score=64.74  Aligned_cols=46  Identities=17%  Similarity=0.413  Sum_probs=36.7

Q ss_pred             cCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC
Q 028808           73 FKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN  120 (203)
Q Consensus        73 ~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d  120 (203)
                      ++++..+|+.|+++||++|..- .|.+.++..++++.++. +..|..+
T Consensus        24 i~~~~~~lV~fya~wC~~C~~~-~~~~~~la~~~~~~~v~-~~~vd~~   69 (119)
T d2b5ea4          24 IQSHDLVLAEFFAPWCGHCKNM-APEYVKAAETLVEKNIT-LAQIDCT   69 (119)
T ss_dssp             HTTCSEEEEEEECTTCHHHHHH-HHHHHHHHHHTTTTTCE-EEEEETT
T ss_pred             HhcCCeEEEEEECCccCccccc-chhhhhhhhhhccccee-eeeeecc
Confidence            3444477889999999999998 89999999888766676 7777653

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=2.9e-07  Score=67.29  Aligned_cols=44  Identities=14%  Similarity=0.389  Sum_probs=32.3

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCC
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVND  121 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~  121 (203)
                      .|| .||++|+++||++|... .+.+.+..+ +.+.+.+ +|.|..|.
T Consensus        24 ~~K-pvlv~F~a~wC~~C~~~-~~~~~~~~~-~~~~~~~-fv~v~vd~   67 (135)
T d1sena_          24 SGL-PLMVIIHKSWCGACKAL-KPKFAESTE-ISELSHN-FVMVNLED   67 (135)
T ss_dssp             HTC-CEEEEEECTTCHHHHHH-HHHHHTCHH-HHHHHTT-SEEEEEEG
T ss_pred             cCC-cEEEEEEecCCCCceec-chhhhhhHH-HHHhcCC-cEEEeCCC
Confidence            577 56778899999999998 788877644 3334455 77777764

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.92  E-value=1.6e-06  Score=58.57  Aligned_cols=52  Identities=15%  Similarity=0.100  Sum_probs=39.4

Q ss_pred             EEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCcc
Q 028808           79 VIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGK  156 (203)
Q Consensus        79 VL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~  156 (203)
                      .+..|+++|||+|... .|.++++.+++.+ .+. ++-|..                       |.+.+++++||+..
T Consensus         4 ~v~~F~a~wC~~C~~~-~p~~~~l~~~~~~-~v~-~~~vd~-----------------------d~~~~l~~~~~V~~   55 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMA-IEVVDEAKKEFGD-KID-VEKIDI-----------------------MVDREKAIEYGLMA   55 (85)
T ss_dssp             CEEEESCSSSCCSTTH-HHHHHHHHHHHCS-SCC-EEEECT-----------------------TTCGGGGGGTCSSC
T ss_pred             EEEEEECCCCcchHHH-HHHHhhhcccccc-ccc-cccccc-----------------------ccchhhHHhcCceE
Confidence            3455999999999999 8999999998864 366 665543                       34556888898863

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.65  E-value=1.6e-05  Score=56.99  Aligned_cols=74  Identities=8%  Similarity=-0.028  Sum_probs=48.0

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEE--EEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHH
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVI--CVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKS  151 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi--~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~  151 (203)
                      ...+.+|+.|++.||++|.  | |++.++++++++.+-+ ++  -|..++.          +-        +.+.++++.
T Consensus        17 ~~~~~~lV~Fya~wC~~ck--~-p~f~kla~~~~~~~~~-v~ia~Vd~~~~----------~~--------~~n~~l~~~   74 (122)
T d2c0ga2          17 ERFPYSVVKFDIASPYGEK--H-EAFTAFSKSAHKATKD-LLIATVGVKDY----------GE--------LENKALGDR   74 (122)
T ss_dssp             TTSSEEEEEEEESSCCSHH--H-HHHHHHHHHHHHHCSS-EEEEEEEECSS----------TT--------CTTHHHHHH
T ss_pred             hcCCcEEEEEECCCCCccc--C-HHHHHHHHHHHHhCCC-eEEEecccccc----------cc--------ccCHHHHHH
Confidence            3334788899999999997  4 8999999998765544 33  2433331          00        235677888


Q ss_pred             cCCccccccccCCCCcceEEEEEeCCE
Q 028808          152 LDLGKDLSAALLGPRSERWSAYVEDGR  178 (203)
Q Consensus       152 yGv~~~~~~~g~~~~~~r~tfIIddG~  178 (203)
                      |++..         ++.|+.+++.+|.
T Consensus        75 ~~i~~---------~~~PTi~~f~~g~   92 (122)
T d2c0ga2          75 YKVDD---------KNFPSIFLFKGNA   92 (122)
T ss_dssp             TTCCT---------TSCCEEEEESSSS
T ss_pred             hhccc---------CCCCcEEEEeCCc
Confidence            87753         1346666776443

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.47  E-value=4.6e-05  Score=52.36  Aligned_cols=30  Identities=10%  Similarity=-0.013  Sum_probs=22.4

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHH
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDK  105 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~  105 (203)
                      +|. +.+..|.+.|||+|..- .|.++++..+
T Consensus        14 ~~~-~~i~~F~s~~C~~C~~~-~p~~~~~a~~   43 (96)
T d1hyua4          14 DGD-FEFETYYSLSCHNCPDV-VQALNLMAVL   43 (96)
T ss_dssp             CSC-EEEEEEECTTCSSHHHH-HHHHHHHHHH
T ss_pred             CCC-eEEEEEECCCCcchHHH-HHHHHHHHHh
Confidence            555 55566889999999877 7877776554

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.45  E-value=1.9e-05  Score=57.70  Aligned_cols=43  Identities=21%  Similarity=0.407  Sum_probs=33.8

Q ss_pred             CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecC
Q 028808           75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVN  120 (203)
Q Consensus        75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d  120 (203)
                      ++ .||+.|++.||++|..- .|.|.+++++|++.+.. +..+..|
T Consensus        30 ~k-~vlV~F~a~wC~~C~~~-~p~~~~la~~~~~~~~~-v~~~~~d   72 (140)
T d2b5ea1          30 KK-DVLVLYYAPWCGHCKRL-APTYQELADTYANATSD-VLIAKLD   72 (140)
T ss_dssp             TC-CEEEEEECTTCHHHHHH-HHHHHHHHHHHHHHCSS-CEEEEEE
T ss_pred             CC-CEEEEEEeccCcccchh-HHHHHHHHHHHhccccc-eEEEeee
Confidence            44 46678999999999988 89999999999877655 5555544

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=97.32  E-value=4.6e-05  Score=53.35  Aligned_cols=34  Identities=18%  Similarity=0.341  Sum_probs=28.6

Q ss_pred             CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcC
Q 028808           75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKG  110 (203)
Q Consensus        75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~g  110 (203)
                      ++ .+|+.|++.||++|..- .|.+.++.+++....
T Consensus        20 ~k-~vlV~fya~wC~~Ck~~-~p~~~~la~~~~~~~   53 (116)
T d2djja1          20 TK-DVLIEFYAPWCGHCKAL-APKYEELGALYAKSE   53 (116)
T ss_dssp             TS-CEEEEEECSSCTTHHHH-HHHHHHHHHHHTTSS
T ss_pred             CC-CEEEEEEeccccccccc-chHHHHHHHHHhccc
Confidence            44 56778999999999998 899999999997653

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.003  Score=46.33  Aligned_cols=19  Identities=11%  Similarity=0.254  Sum_probs=15.3

Q ss_pred             CCCeEEEEEeeCCCCCCCCc
Q 028808           74 KGKKVVIFGLPGAYTGVCSN   93 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~   93 (203)
                      ++| .||+.|.++||+.|..
T Consensus        41 ~~K-~llV~~~~~~C~~C~~   59 (147)
T d2dlxa1          41 QNK-WLMINIQNVQDFACQC   59 (147)
T ss_dssp             HTC-EEEEEEECSCTTTHHH
T ss_pred             cCC-cEEEEEecCCCCchHH
Confidence            566 5777888999999964

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.21  E-value=0.00069  Score=53.10  Aligned_cols=86  Identities=7%  Similarity=0.039  Sum_probs=54.5

Q ss_pred             EEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeCCchHHHHcCCccc
Q 028808           78 VVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKD  157 (203)
Q Consensus        78 vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~~~~v~~~yGv~~~  157 (203)
                      +||+.|+++||+.|..= -+.|.+++.+|..  +. ++-|..+.          ..+              ...|++.  
T Consensus       122 ~Vvvhfy~~~~~~C~~~-~~~l~~lA~~~~~--vk-F~ki~~~~----------~~~--------------~~~~~i~--  171 (217)
T d2trcp_         122 TIVVNIYEDGVRGCDAL-NSSLECLAAEYPM--VK-FCKIRASN----------TGA--------------GDRFSSD--  171 (217)
T ss_dssp             EEEEEEECTTSTTHHHH-HHHHHHHHTTCTT--SE-EEEEEHHH----------HTC--------------STTSCGG--
T ss_pred             eEEEEEEcCCCCChhhh-hhhHHHHhhhccc--ce-EEEEcccc----------chh--------------HHhCCCC--
Confidence            67889999999999876 5788888777753  55 66664321          111              1123342  


Q ss_pred             cccccCCCCcceEEEEEeCCEEEEEEeecC-CC--CcccCCHHHHHhc
Q 028808          158 LSAALLGPRSERWSAYVEDGRIKALNVEEA-PS--KMKVSGGDVILGQ  202 (203)
Q Consensus       158 ~~~~g~~~~~~r~tfIIddG~I~~~~~~~~-~~--~~~~~~a~~vL~~  202 (203)
                               ..|+.+++.+|+++...++.. .+  .++..+.+.+|..
T Consensus       172 ---------~lPtl~~yk~G~~v~~~vg~~~~~g~~~~~~~lE~~L~~  210 (217)
T d2trcp_         172 ---------VLPTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNE  210 (217)
T ss_dssp             ---------GCSEEEEEETTEEEEEETTGGGGSCSSCCHHHHHHHHHT
T ss_pred             ---------CCCeEEEEECCEEEEEEECccccccccCCHHHHHHHHHH
Confidence                     346666667999999998853 11  2344456666643

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.87  E-value=0.00026  Score=48.94  Aligned_cols=23  Identities=13%  Similarity=0.122  Sum_probs=16.7

Q ss_pred             EEEEeeCCCCCCCCccchhhHHHh
Q 028808           79 VIFGLPGAYTGVCSNQHVPSYKNN  102 (203)
Q Consensus        79 VL~~f~~~~cp~C~~ehl~~l~~~  102 (203)
                      +|+.|++.|||+|..- .+.|.++
T Consensus        18 ~i~lft~~~C~~C~~a-~~~L~~~   40 (100)
T d1wjka_          18 VLTLFTKAPCPLCDEA-KEVLQPY   40 (100)
T ss_dssp             EEEEEECSSCHHHHHH-HHHTSTT
T ss_pred             EEEEEECCCCCChHHH-HHHHHHh
Confidence            5667999999999765 4444444

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.76  E-value=0.0012  Score=46.74  Aligned_cols=28  Identities=4%  Similarity=-0.132  Sum_probs=18.4

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHHHH
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNIDKF  106 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f  106 (203)
                      ..+++.|++.||+.| .- +|.+..+...+
T Consensus        29 ~~~~V~FyapwC~~~-~~-~~~~~~~~~~~   56 (124)
T d1a8ya1          29 EVLALLYHEPPEDDK-AS-QRQFEMEELIL   56 (124)
T ss_dssp             SEEEEEEECCCCSSH-HH-HHHHHHHHHHH
T ss_pred             CeEEEEEECCCccch-hh-hhHHHHHHHHH
Confidence            367889999999855 33 45555544444

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=94.35  E-value=0.017  Score=36.71  Aligned_cols=51  Identities=8%  Similarity=-0.010  Sum_probs=33.0

Q ss_pred             EEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEE
Q 028808           81 FGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFY  141 (203)
Q Consensus        81 ~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpll  141 (203)
                      ..|..++||.|..-  .      +-|+++|+. ..-+..+......++.++.+.. .+|.+
T Consensus         4 ~iYt~~~C~~C~~a--k------~~L~~~~i~-~~~~~i~~~~~~~~~~~~~g~~-tvP~i   54 (74)
T d1r7ha_           4 TLYTKPACVQCTAT--K------KALDRAGLA-YNTVDISLDDEARDYVMALGYV-QAPVV   54 (74)
T ss_dssp             EEEECTTCHHHHHH--H------HHHHHTTCC-CEEEETTTCHHHHHHHHHTTCB-CCCEE
T ss_pred             EEEeCCCChhHHHH--H------HHHHHcCCc-eEEEEccCCHHHHHHHHHhCCC-CcCEE
Confidence            34788999999643  2      334567888 7777777655555666666553 35544

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=93.51  E-value=0.042  Score=35.07  Aligned_cols=54  Identities=7%  Similarity=-0.068  Sum_probs=34.4

Q ss_pred             EEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEeeC
Q 028808           81 FGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDF  144 (203)
Q Consensus        81 ~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fpllsD~  144 (203)
                      ..|-.+|||.|..-        -+.|.++|+. ..-+..+......++.+..|.. .+|++...
T Consensus         4 ~iYs~~~C~~C~~a--------k~~L~~~~i~-y~~~~i~~~~~~~~~~~~~g~~-tvP~i~i~   57 (76)
T d1h75a_           4 TIYTRNDCVQCHAT--------KRAMENRGFD-FEMINVDRVPEAAEALRAQGFR-QLPVVIAG   57 (76)
T ss_dssp             EEEECTTCHHHHHH--------HHHHHHTTCC-CEEEETTTCHHHHHHHHHTTCC-SSCEEEET
T ss_pred             EEEeCCCCccHHHH--------HHHHHhcCce-eEEEeecCCHHHHHHHHhcCCC-CCCEEEEC
Confidence            34788999999643        2334567888 7777776544445555666664 46666543

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.57  E-value=0.096  Score=36.19  Aligned_cols=38  Identities=11%  Similarity=0.103  Sum_probs=27.6

Q ss_pred             ccccCCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcC
Q 028808           70 KDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKG  110 (203)
Q Consensus        70 ~dl~~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~g  110 (203)
                      .++....+.+||.|.+.||..|.   .|++.++++++++..
T Consensus        15 d~~i~~~~~~lV~F~~~wc~~~~---~~~~~~la~~~~~~~   52 (122)
T d1g7ea_          15 YKVIPKSKFVLVKFDTQYPYGEK---QDEFKRLAENSASSD   52 (122)
T ss_dssp             HHHGGGSSEEEEEEECSSCCTTT---THHHHHHHHHGGGCS
T ss_pred             HHHHhhCCeEEEEEecCCcCccc---CHHHHHHHHHHHHHH
Confidence            34333334788889999998885   378999999998764

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=91.23  E-value=0.017  Score=41.85  Aligned_cols=37  Identities=22%  Similarity=0.176  Sum_probs=24.4

Q ss_pred             CCCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEE
Q 028808           74 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICV  117 (203)
Q Consensus        74 ~gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~I  117 (203)
                      .+| .+|+.|---.||+|.+-| +.+.++.    +.+.+ |+-+
T Consensus        25 ~ak-~~I~~FsD~~CPyC~~~~-~~l~~l~----~~~~~-v~~~   61 (150)
T d1t3ba1          25 NEK-HVVTVFMDITCHYCHLLH-QQLKEYN----DLGIT-VRYL   61 (150)
T ss_dssp             TCS-EEEEEEECTTCHHHHHHH-TTHHHHH----HTTEE-EEEE
T ss_pred             CCC-EEEEEEECCCCHHHHHHh-HHHHHHh----ccCce-EEEE
Confidence            345 566668888999999873 7666553    44555 5444

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=91.03  E-value=0.05  Score=34.45  Aligned_cols=51  Identities=6%  Similarity=-0.003  Sum_probs=30.1

Q ss_pred             EeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCHHHHHHHHHHhCCCCceEEEe
Q 028808           82 GLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYG  142 (203)
Q Consensus        82 ~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~~~~~~~~~~~~l~~~fplls  142 (203)
                      .|..++||.|.+-  ..      -++++|+. ...+..+.....+.+.+..+.. .+|.+.
T Consensus         9 iYs~~~C~~C~~a--k~------lL~~~~i~-~~~~~v~~~~~~~~~~~~~~~~-tvP~i~   59 (74)
T d1nm3a1           9 IFTKPGCPFCAKA--KQ------LLHDKGLS-FEEIILGHDATIVSVRAVSGRT-TVPQVF   59 (74)
T ss_dssp             EEECSSCHHHHHH--HH------HHHHHTCC-CEEEETTTTCCHHHHHHHTCCS-SSCEEE
T ss_pred             EEECCCCHHHHHH--HH------HHHHcCCC-eEEEEccCcHHHHHHHHHhCCc-cCCEEE
Confidence            3788999999753  22      23456777 6666666543344455555553 455543

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.03  E-value=0.036  Score=40.27  Aligned_cols=36  Identities=25%  Similarity=0.272  Sum_probs=23.8

Q ss_pred             CCeEEEEEeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEE
Q 028808           75 GKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICV  117 (203)
Q Consensus        75 gk~vVL~~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~I  117 (203)
                      +| ++|+-|---.||+|..- .+.+.++    .+.++. ++-+
T Consensus        26 ak-~tIv~FsD~~CpyC~~~-~~~l~~~----~~~~~~-~~~~   61 (156)
T d1eeja1          26 EK-HVITVFTDITCGYCHKL-HEQMADY----NALGIT-VRYL   61 (156)
T ss_dssp             CC-EEEEEEECTTCHHHHHH-HTTHHHH----HHTTEE-EEEE
T ss_pred             CC-EEEEEEeCCCCHHHHHH-HHHHHHh----hccCce-EEEE
Confidence            45 55666888899999876 4776654    345565 5443

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.90  E-value=1  Score=32.48  Aligned_cols=27  Identities=11%  Similarity=0.326  Sum_probs=20.6

Q ss_pred             eEEEEEeeCCCCCCCCccchhhHHHhHH
Q 028808           77 KVVIFGLPGAYTGVCSNQHVPSYKNNID  104 (203)
Q Consensus        77 ~vVL~~f~~~~cp~C~~ehl~~l~~~~~  104 (203)
                      ++.|+.|---.||+|... .+.+.++.+
T Consensus        37 ~~tv~vF~D~~CP~C~~~-~~~l~~l~~   63 (169)
T d1v58a1          37 PVIVYVFADPFCPYCKQF-WQQARPWVD   63 (169)
T ss_dssp             SEEEEEEECTTCHHHHHH-HHHHHHHHH
T ss_pred             CEEEEEEECCCCcchHHH-HHHHHHHHh
Confidence            466777888999999987 577766544

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=86.85  E-value=0.26  Score=31.47  Aligned_cols=51  Identities=6%  Similarity=0.024  Sum_probs=29.4

Q ss_pred             EeeCCCCCCCCccchhhHHHhHHHHHHcCCcEEEEEecCCH-HHHHHHHHHhCCCCceEEEe
Q 028808           82 GLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDP-YVMNGWAEKLQAKDVIEFYG  142 (203)
Q Consensus        82 ~f~~~~cp~C~~ehl~~l~~~~~~f~~~gv~~vi~IS~d~~-~~~~~~~~~~~l~~~fplls  142 (203)
                      .|-.+|||+|.+-  .      .-++++|+. ..-+..+.. .....+.+..|.. .+|.+.
T Consensus         5 iys~~~Cp~C~~a--k------~~L~~~~i~-y~~~di~~~~~~~~~~~~~~g~~-tvP~i~   56 (82)
T d1fova_           5 IYTKETCPYCHRA--K------ALLSSKGVS-FQELPIDGNAAKREEMIKRSGRT-TVPQIF   56 (82)
T ss_dssp             EEECSSCHHHHHH--H------HHHHHHTCC-CEEEECTTCSHHHHHHHHHHSSC-CSCEEE
T ss_pred             EEeCCCCHhHHHH--H------HHHHHcCCC-eEEEeccchHHHHHHHHHHhCCC-CCCeEE
Confidence            3778999999743  2      234556777 666666543 3334455555554 355544